1. d.32.1 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase beta-alpha-beta(3); 2 layers: alpha/beta
1twu d1twua_ A:80-86,87-102,110-117,116-123,125-133
2q48 d2q48a1 A:103-109,111-123,130-137,138-145,147-154
1xy7 d1xy7a_ A:103-109,111-123,130-137,138-145,147-154
1xy7 d1xy7b_ B:103-109,111-123,130-137,139-145,147-154
2q48 d2q48b1 B:103-109,111-123,130-137,138-145,147-154
1lgt d1lgta1 A:58-67,69-84,91-99,101-109,111-119
1knf d1knfa1 A:58-67,69-84,91-99,101-109,111-119
1lkd d1lkda1 A:58-67,69-84,91-99,101-109,111-119
1eiq d1eiqa1 A:57-66,68-83,90-98,100-108,110-118
1eir d1eira1 A:57-66,68-83,90-98,100-108,110-118
1dhy d1dhya1 A:56-66,68-83,90-98,100-108,110-118
1kw3 d1kw3b1 B:56-66,68-83,90-98,100-108,110-118
1kw6 d1kw6b1 B:57-66,68-83,90-98,100-108,110-118
1kw8 d1kw8b1 B:56-66,68-83,90-98,100-108,110-118
1kwb d1kwbb1 B:56-66,68-83,90-98,100-108,110-118
1kwc d1kwcb1 B:56-66,68-83,90-98,100-108,110-118
1kw9 d1kw9b1 B:56-66,68-83,90-98,100-108,110-118
1eil d1eila1 A:56-66,68-83,90-98,100-108,110-118
2. c.57.1 Molybdenum cofactor biosynthesis proteins
Molybdenum cofactor biosynthesis proteins 3 layers: a/b/a; mixed beta-sheet of 5 strands; order: 21354, strand 5 is antiparallel to the rest; permutation of the Phosphorylase/hydrolase-like fold
2g2c d2g2ca1 A:68-74,82-92,96-107,120-125,130-137
2f7y d2f7yb1 B:68-74,83-93,96-112,120-125,126-134
2f7y d2f7ya1 A:68-74,82-92,96-112,120-125,126-134
2f7w d2f7wa1 A:68-74,82-92,96-112,120-125,126-134
1di6 d1di6a_ A:68-74,82-92,96-112,120-125,126-133
2f7w d2f7wb1 B:68-74,82-93,96-112,120-125,126-133
1jlj d1jljb_ B:80-86,94-104,108-124,132-137,138-145
1jlj d1jlja_ A:80-86,94-104,108-124,132-137,138-145
2f7w d2f7wc1 C:68-74,82-93,96-112,120-125,126-133
1jlj d1jljc_ C:80-86,94-104,108-124,132-137,138-145
1o8n d1o8na_ A:73-79,87-97,101-117,124-130,131-138
1di7 d1di7a_ A:68-74,82-92,96-112,120-125,126-133
2f7y d2f7yc1 C:68-74,82-93,96-112,120-125,126-133
1uux d1uuxa_ A:73-79,87-97,101-117,125-130,131-138
1uuy d1uuya_ A:73-79,87-97,101-117,125-130,131-138
1o8o d1o8ob_ B:73-79,87-97,101-117,125-130,131-138
1o8q d1o8qf_ F:73-79,87-97,101-117,125-130,131-138
1ihc d1ihca_ A:80-86,94-104,108-124,132-137,138-145
1o8q d1o8qc_ C:73-79,87-97,101-117,125-130,131-138
1o8q d1o8qg_ G:73-79,87-97,101-117,125-130,131-138
1o8q d1o8qa_ A:73-79,87-97,101-117,125-130,131-138
1o8q d1o8qh_ H:73-79,87-97,101-117,125-130,131-138
1o8q d1o8qb_ B:73-79,87-97,101-117,125-130,131-138
1o8q d1o8qe_ E:73-79,87-97,101-117,125-130,131-138
1o8q d1o8qd_ D:73-79,87-97,101-117,125-130,131-138
1o8n d1o8nb_ B:73-79,87-97,101-117,125-130,131-138
1eav d1eava_ A:73-79,87-97,101-117,125-130,131-138
1eav d1eave_ E:73-79,87-97,101-117,125-130,131-138
1o8o d1o8oa_ A:73-79,88-97,101-117,124-130,131-138
1eav d1eavg_ G:73-79,87-97,101-117,125-130,131-138
1eav d1eavc_ C:73-79,87-97,101-117,125-130,131-138
1eav d1eavd_ D:73-79,87-97,101-117,125-130,131-138
1o8o d1o8oc_ C:73-79,87-97,101-117,125-130,131-138
1eav d1eavf_ F:73-79,87-97,101-117,125-130,131-138
1o8n d1o8nc_ C:73-79,87-97,101-117,125-130,131-138
1eav d1eavb_ B:73-79,88-97,101-117,125-130,131-138
1eav d1eavh_ H:73-79,88-97,101-117,125-130,131-138
1r2k d1r2ka_ A:70-76,84-94,98-114,122-128,129-136
1r2k d1r2kb_ B:70-76,84-94,98-114,122-128,129-136
1mkz d1mkza_ A:71-77,86-95,99-115,123-129,130-137
1y5e d1y5eb1 B:74-80,88-98,102-119,127-133,134-141
1mkz d1mkzb_ B:71-77,86-95,99-115,123-129,130-137
1y5e d1y5ea1 A:74-80,89-98,102-119,127-133,134-141
1y5e d1y5ec1 C:74-80,89-98,102-119,127-133,134-141
3. c.23.16 Class I glutamine amidotransferase-like conserved positions of the oxyanion hole and catalytic nucleophile; different constituent families contain different additional structures !
Flavodoxin-like 3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
1vcm d1vcma1 A:386-391,392-407,454-461,506-510,515-520
1vco d1vcoa1 A:386-391,392-407,454-461,506-510,515-520
1vcn d1vcna1 A:386-391,392-407,454-461,506-510,515-520
1s1m d1s1ma1 A:374-379,380-395,452-459,499-503,508-513
1s1m d1s1mb1 B:374-379,380-395,452-459,499-503,508-513
4. d.287.1 DNA methylase specificity domain
DNA methylase specificity domain comprises the N-terminal, double beta-helix like structure and C-terminal alpha-hairpin
1yf2 d1yf2b1 B:50-55,55-63,74-82,85-89,106-112
5. c.77.1 Isocitrate/Isopropylmalate dehydrogenase-like the constituent families form similar dimers !
Isocitrate/Isopropylmalate dehydrogenase-like consists of two intertwined (sub)domains related by pseudo dyad; duplication ! 3 layers: a/b/a; single mixed beta-sheet of 10 strands, order 213A945867 (A=10); strands from 5 to 9 are antiparallel to the rest
1cm7 d1cm7b_ B:69-76,89-103,168-187,267-274,276-283
6. c.49.1 PK C-terminal domain-like
Pyruvate kinase C-terminal domain-like 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145, strand 5 is antiparallel to the rest
1vp8 d1vp8a_ A:5-10,15-31,111-125,160-168,175-187
1t57 d1t57c_ C:5-9,12-31,110-124,159-167,174-185
7. d.17.4 NTF2-like has a beta-alpha(2)-beta insertion after the main helix !
Cystatin-like Core: alpha-beta(4); helix packs against coiled antiparallel beta-sheet
1q40 d1q40d_ D:335-342,377-386,388-400,471-484,488-501
1q40 d1q40b_ B:335-342,377-386,388-400,471-484,488-501
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 826 (enumeration index: query685.858) of S5
3oi9 A:64-70,78-88,92-104,116-121,122-129
3k6a C:68-74,82-93,96-112,120-125,126-134
3k6a A:68-74,82-93,96-112,120-125,126-134
3k6a F:68-74,82-93,96-112,120-125,126-134
3k6a E:68-74,82-93,96-112,120-125,126-134
3k6a D:68-74,82-93,96-112,120-125,126-134
3k6a B:68-74,82-93,96-112,120-125,126-134
3mcj C:70-76,84-94,98-114,122-127,128-136
3mcj A:70-76,84-94,98-114,122-127,128-136
3mcj E:70-76,84-95,98-114,122-127,128-136
3mcj F:70-76,84-94,98-114,122-127,128-134
3mcj B:70-76,84-95,98-114,122-127,128-136
3mcj D:70-76,84-95,98-114,122-127,128-136
3pcs D:153-157,165-179,303-317,357-369,386-395
3pcs B:153-157,165-180,303-318,357-369,386-395
3pcs A:153-157,165-179,303-318,357-369,386-395
3pcs C:153-157,165-180,303-316,357-369,386-395
3tcr A:83-89,97-107,111-126,135-141,142-149
3tcr B:83-89,97-107,111-126,135-141,142-149
3bqw A:205-210,211-221,235-245,247-255,256-263
2ad5 B:374-379,380-395,452-459,499-503,508-513
2ad5 A:374-379,380-395,452-459,499-503,508-513
3mas B:68-74,94-104,185-204,290-297,302-308
3mch A:64-70,78-88,92-101,116-121,122-129
3mch C:64-70,79-88,92-101,116-121,122-129
3mch B:64-70,78-88,92-101,116-121,122-129
2v4u A:394-399,401-415,462-469,510-515,519-524
3o3c B:42-49,50-58,70-87,89-97,99-107
3o3c A:42-49,50-58,70-87,89-97,99-107
3o3c D:42-49,50-58,70-87,89-97,99-107
3o3c C:42-49,50-58,70-87,89-97,99-107
3rfq A:86-92,100-110,114-129,139-144,145-152
3rfq C:86-92,100-110,114-129,139-144,145-152
3rfq B:86-92,100-110,114-129,139-144,145-152
2zi8 B:56-68,70-85,92-100,102-110,112-120
2zi8 A:58-68,70-85,92-100,102-110,112-120
2vkt A:394-399,400-415,462-469,510-515,519-524
3kol A:21-28,29-42,52-62,63-70,72-80
2pbq A:70-76,84-95,98-114,122-127,128-136
2pbq B:70-76,84-95,98-114,122-127,128-136
2pbq C:70-76,84-94,98-114,122-127,128-136
3iwt B:83-89,98-107,111-126,137-143,144-151
3iwt C:83-89,97-107,111-126,137-143,144-151
3iwt A:83-89,97-107,111-126,137-143,144-151
2w7t A:414-419,421-435,481-488,533-537,542-547
3eb8 A:135-140,151-161,286-309,356-371,389-399
3eb8 B:135-140,151-161,286-309,356-371,389-399
3mci C:70-76,84-94,98-114,122-127,128-136
3mci A:70-76,84-95,98-114,122-127,128-136
3mci B:70-76,84-95,98-114,122-127,128-136
3nb0 D:42-49,50-58,70-87,89-96,101-107
3nb0 C:42-49,50-58,70-87,89-96,100-107
3nb0 B:42-49,50-58,70-87,89-97,99-107
3mar B:68-74,94-104,185-204,290-297,302-308
2g4r B:64-70,78-88,92-104,116-121,122-129
2g4r A:64-70,78-88,92-108,116-121,122-129
2g4r C:64-70,78-88,92-104,116-121,122-129
3rsz C:42-49,50-58,70-87,89-97,99-107
3rsz D:42-49,50-58,70-87,89-97,99-107
3rsz B:42-49,50-58,70-87,89-97,99-107
3rsz A:42-49,50-58,70-87,89-97,99-107
3q1c A:153-157,165-179,303-316,357-369,386-395
3nch C:42-49,50-58,70-87,89-97,99-107
3nch D:42-49,50-58,70-87,89-97,99-107
3nch B:42-49,50-58,70-87,89-97,99-107
3nch A:42-49,50-58,70-87,89-97,99-107
3map B:68-74,94-104,185-204,290-297,302-308
3naz C:42-49,50-58,70-87,89-97,99-107
3naz A:42-49,50-58,70-87,89-97,99-107
3naz D:42-49,50-58,70-87,89-97,99-107
3naz B:42-49,50-58,70-87,89-97,99-107
3m3p A:84-89,90-100,121-129,162-167,169-174
2qfv C:69-75,95-105,187-206,292-299,304-310
2zyq A:58-68,70-85,92-100,102-110,112-120
2zyq B:58-68,70-85,92-100,102-110,112-120
2is8 A:64-70,78-88,92-101,116-121,122-129
2is8 C:64-70,79-88,92-101,116-121,122-129
2is8 B:64-70,78-88,92-101,116-121,122-129
3pcr A:153-157,165-180,303-318,357-369,386-395
3fij D:108-115,116-126,162-169,201-206,209-216
3fij A:108-115,116-126,162-169,201-206,209-216
3fij H:108-115,116-126,162-169,201-206,209-216
3fij G:108-115,116-126,162-169,201-206,209-216
3fij B:108-115,116-126,162-169,201-206,209-216
3fij C:108-115,116-126,162-169,201-206,209-216
3fij E:108-115,116-126,162-169,201-206,209-216
3fij F:108-115,116-126,162-169,201-206,209-216
3ee1 A:134-139,151-161,286-309,356-371,389-398
3ee1 B:135-139,151-161,286-309,356-371,389-398
3nva A:380-386,387-402,449-456,495-499,504-509
3nva B:381-386,387-402,449-456,495-499,504-509
3rt1 B:42-49,50-58,70-87,89-96,100-107
3rt1 C:42-49,50-58,70-87,89-96,100-107
3rt1 D:42-49,50-58,70-87,89-96,100-107
3pzy A:64-70,78-88,92-104,116-121,122-129
2qq1 C:70-76,84-95,98-114,122-127,128-136
2qq1 A:70-76,84-95,98-114,122-127,128-136
2qq1 E:70-76,85-95,98-114,122-127,128-136
2qq1 F:70-76,84-95,98-114,122-127,128-136
2qq1 D:70-76,84-94,98-114,122-127,128-134
2qq1 B:70-76,84-94,98-114,122-127,128-136