1. c.23.16 Class I glutamine amidotransferase-like conserved positions of the oxyanion hole and catalytic nucleophile; different constituent families contain different additional structures !
Flavodoxin-like 3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
1i7q d1i7qd_ D:80-85,86-96,149-153,157-163,164-170
1i1q d1i1qb_ B:78-83,84-94,146-150,154-160,161-167
1i7q d1i7qb_ B:80-85,86-96,149-153,157-163,164-170
1i7s d1i7sb_ B:80-85,86-96,149-153,157-163,164-170
1i7s d1i7sd_ D:80-85,86-96,149-153,157-163,164-170
1ce8 d1ce8h2 H:264-269,270-280,328-333,338-343,346-351
1m6v d1m6vf2 F:264-269,270-280,328-333,338-343,346-351
1cs0 d1cs0f2 F:264-269,270-280,328-333,338-343,346-351
1bxr d1bxrh2 H:264-269,270-280,328-333,338-343,346-351
1jdb d1jdbi2 I:264-269,270-280,328-333,338-343,346-351
1c3o d1c3of2 F:264-269,270-280,328-333,338-343,346-351
1ce8 d1ce8f2 F:264-269,270-280,328-333,338-343,346-351
1jdb d1jdbf2 F:264-269,270-280,328-333,338-343,346-351
1ce8 d1ce8d2 D:264-269,270-280,328-333,338-343,346-351
1vcn d1vcna1 A:386-391,392-407,491-495,506-510,515-520
1m6v d1m6vd2 D:264-269,270-280,328-333,338-343,346-351
1a9x d1a9xf2 F:5764-5769,5770-5780,5828-5833,5838-5843,5846-5851
1c30 d1c30f2 F:264-269,270-280,328-333,338-343,346-351
1a9x d1a9xd2 D:3764-3769,3770-3780,3828-3833,3838-3843,3846-3851
1bxr d1bxrf2 F:264-269,270-280,328-333,338-343,346-351
1cs0 d1cs0d2 D:264-269,270-280,328-333,338-343,346-351
1ce8 d1ce8b2 B:264-269,270-280,328-333,338-343,346-351
1a9x d1a9xb2 B:1764-1769,1770-1780,1828-1833,1838-1843,1846-1851
1bxr d1bxrd2 D:264-269,270-280,328-333,338-343,346-351
1c30 d1c30d2 D:264-269,270-280,328-333,338-343,346-351
1m6v d1m6vb2 B:264-269,270-280,328-333,338-343,346-351
1bxr d1bxrb2 B:264-269,270-280,328-333,338-343,346-351
2a9v d2a9vb1 B:74-80,81-91,143-147,152-157,160-165
1t3t d1t3ta2 A:1129-1135,1136-1145,1219-1223,1245-1249,1253-1258
2nv0 d2nv0a1 A:73-79,79-87,149-153,157-162,163-168
1vco d1vcoa1 A:386-391,392-407,463-471,506-510,515-520
1vcm d1vcma1 A:386-391,392-407,463-471,506-510,515-520
1r9g d1r9ga_ A:74-79,80-87,149-153,157-162,163-168
1r9g d1r9gb_ B:73-79,80-87,149-153,157-162,163-168
1q7r d1q7ra_ A:72-78,78-85,148-152,156-161,162-167
2nv0 d2nv0b1 B:73-79,80-87,149-153,157-162,163-168
1qdl d1qdlb_ B:79-84,85-95,150-155,160-165,168-173
1s1m d1s1ma1 A:374-379,380-395,461-470,499-503,508-513
1vcn d1vcna1 A:386-391,392-407,463-472,506-510,515-520
1s1m d1s1ma1 A:374-379,380-395,489-494,499-503,508-513
1s1m d1s1mb1 B:374-379,380-395,461-470,499-503,508-513
1kwk d1kwka3 A:477-483,500-508,548-552,557-562,563-568
1kwg d1kwga3 A:477-483,500-508,548-552,557-562,563-568
1s1m d1s1mb1 B:374-379,380-395,489-494,499-503,508-513
1l9x d1l9xd_ D:105-110,111-122,193-199,205-209,213-218
1l9x d1l9xc_ C:105-110,111-122,193-199,205-209,213-218
1vco d1vcoa1 A:386-391,392-407,491-497,506-510,515-520
1r9g d1r9gb_ B:73-79,80-87,128-135,157-162,163-168
1o1y d1o1ya_ A:83-88,89-99,130-135,160-165,166-171
1k9v d1k9vf_ F:378-384,385-392,453-459,465-470,471-476
1kxj d1kxjb_ B:78-84,85-92,153-159,165-170,171-176
2abw d2abwa1 A:82-87,87-94,169-174,183-188,189-194
1i7q d1i7qb_ B:80-85,86-96,126-133,157-163,164-170
2abw d2abwb1 B:82-87,87-94,169-175,183-188,189-194
2. d.126.1 Pentein
Pentein, beta/alpha-propeller duplication: composed of 5 alpha-beta(2)-alpha-beta units arranged around pseudo fivefold axis
1g62 d1g62a_ A:1-5,31-43,157-163,197-201,202-207
1g61 d1g61b_ B:4003-4008,4033-4045,4159-4164,4200-4204,4205-4211
3. c.37.1 P-loop containing nucleoside triphosphate hydrolases division into families based on beta-sheet topologies !
P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
1f9u d1f9ua_ A:465-474,490-510,555-562,599-612,616-628
1f9t d1f9ta_ A:465-474,490-510,555-562,599-612,615-628
1f9v d1f9va_ A:465-474,490-510,555-562,599-612,615-628
3kar d3kara_ A:465-474,490-510,555-562,599-613,614-628
1f9w d1f9wb_ B:465-474,490-510,555-562,598-613,614-629
1f9w d1f9wa_ A:465-474,490-510,555-562,598-613,614-629
3cob d3cobc1 C:961-970,988-1005,1046-1052,1089-1103,1104-1118
2kin d2kin.1 A:77-86,107-123,162-167,205-219,220-234
1sdm d1sdma_ A:961-970,988-1008,1046-1052,1089-1103,1104-1118
3kin d3kin.1 A:77-86,107-123,162-167,205-219,220-234
1mkj d1mkja_ A:76-85,106-123,161-166,204-218,219-233
3cob d3coba1 A:961-970,988-1008,1046-1052,1089-1103,1104-1118
3cnz d3cnza1 A:961-970,988-1008,1046-1052,1089-1103,1104-1118
3cnz d3cnzb1 B:961-970,988-1008,1046-1052,1089-1103,1104-1118
1cz7 d1cz7a_ A:425-434,452-472,511-516,553-567,568-582
1cz7 d1cz7d_ D:425-434,452-472,511-516,552-567,568-583
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 708 (enumeration index: query687.860) of S5
2wjz B:78-84,85-92,153-159,165-170,171-176
2wjz F:78-84,85-92,153-159,165-170,171-176
2wjz D:78-84,85-92,153-159,165-170,171-176
2ywc D:73-78,79-89,140-144,149-154,157-162
2ywc C:73-78,79-89,140-144,149-154,157-162
2x7n B:1-5,31-43,157-163,197-201,202-207
2ad5 A:374-379,380-395,489-494,499-503,508-513
2ad5 B:374-379,380-395,461-470,499-503,508-513
2ad5 B:374-379,380-395,489-494,499-503,508-513
2xyz B:128-133,143-159,218-223,372-376,419-424
2xyz A:128-133,143-159,219-223,371-376,419-424
2xyz C:128-134,143-159,218-223,372-376,419-424
2xyz F:128-133,143-159,218-223,371-376,419-424
2xyz E:128-132,143-159,218-223,372-376,419-423
3h4s A:961-970,988-1005,1046-1052,1089-1103,1104-1118
2y1v C:35-45,48-61,137-144,155-163,176-188
2y1v A:35-45,48-60,137-144,155-163,176-188
2y1v B:35-45,48-61,136-144,155-163,176-188
2o0a A:442-450,453-466,512-518,545-557,569-579
2v4u A:394-399,401-415,500-504,510-515,519-524
2vkt A:394-399,400-415,500-504,510-515,519-524
2vkt A:394-399,400-415,472-477,510-515,519-524
2y65 B:83-92,113-129,168-173,211-225,226-240
2y65 C:83-92,113-129,168-173,211-225,226-240
2y65 D:83-92,113-129,168-173,211-225,226-240
2wbe C:83-91,120-137,177-181,219-231,238-251
2w7t A:414-419,421-435,519-523,533-537,542-547
2w7t A:414-419,421-435,491-500,533-537,542-547
3nwn A:84-93,114-131,173-179,214-227,236-248
2ywb D:73-78,79-89,140-144,149-154,157-162
3aq3 B:8-12,16-39,79-83,129-135,198-204
3aq3 A:8-12,16-38,79-83,129-135,199-204
3aq3 C:8-12,16-33,79-83,129-135,199-204
2iss E:73-77,78-85,149-153,157-162,163-168
2iss D:73-77,78-85,149-153,157-162,163-168
2iss F:73-77,78-85,149-153,157-162,163-168
3aq2 A:8-12,16-36,79-83,129-135,195-200
3aq2 B:8-12,16-35,79-83,129-135,195-200
3bfn A:118-127,145-163,203-207,245-259,263-277
2vpi B:99-104,104-115,145-153,175-181,182-188
2vpi A:99-104,104-115,167-171,175-181,182-188
2vpi A:99-104,104-115,145-153,175-181,182-188
2vpi B:99-104,104-115,167-171,175-181,182-188
2vxo A:99-104,104-115,167-171,175-181,182-188
2vxo A:99-104,104-115,145-150,175-181,182-188
2vxo B:99-104,104-115,145-152,175-181,182-188
2vxo B:99-104,104-115,167-171,175-181,182-188
3fij C:108-115,116-126,192-196,201-206,209-216
3fij F:108-115,116-126,192-196,201-206,209-216
3fij B:108-115,116-126,192-196,201-206,209-216
3fij H:108-115,116-126,192-196,201-206,209-216
3fij E:108-115,116-126,192-196,201-206,209-216
3tqi C:80-86,86-97,157-161,166-172,173-179
3tqi A:80-86,86-97,157-161,166-172,173-179
3tqi B:80-86,86-97,157-161,166-172,173-179
3lre A:106-113,131-148,185-190,226-241,251-261
2y5w A:83-92,113-129,168-173,211-225,226-240
2y5w B:83-92,113-130,168-173,211-225,226-240
3nva A:380-386,387-402,458-463,495-499,504-509
3nva B:381-386,387-402,486-490,495-499,504-509
3nva B:381-386,387-402,458-463,495-499,504-509
3nva A:380-386,387-402,486-490,495-499,504-509
2ywj A:70-75,75-83,144-148,152-157,158-163
2vqz F:379-389,390-406,450-454,459-465,477-482
2rep A:401-410,432-452,495-501,537-551,555-568
3d54 H:80-86,87-96,156-160,171-175,179-184
3d54 L:80-86,87-96,156-160,171-175,179-184
3d54 D:80-86,87-96,156-160,171-175,179-184