1. b.121.4 Positive stranded ssRNA viruses
Nucleoplasmin-like/VP (viral coat and capsid proteins) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands ! characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
1na1 d1na1.1 B:20-27,27-34,100-112,195-203,217-225
1ncq d1ncq.1 B:20-27,27-34,100-112,195-203,217-225
1qju d1qju.1 2:20-27,27-34,100-112,196-204,218-226
1pvc d1pvc.1 2:20-27,27-34,100-112,203-211,225-233
1piv d1piv.1 2:20-27,27-34,100-112,203-211,225-233
1vba d1vba.1 2:20-27,27-34,100-112,203-211,225-233
1vbe d1vbe.1 2:20-27,27-34,100-112,203-211,225-233
1vbb d1vbb.1 2:20-27,27-34,100-112,203-211,225-233
1vbc d1vbc.1 2:20-27,27-34,100-112,203-211,225-233
1po1 d1po1.1 2:20-27,27-34,100-112,204-212,226-234
1po2 d1po2.1 2:20-27,27-34,100-112,204-212,226-234
2hwb d2hwb.1 2:20-27,30-34,100-112,195-203,217-225
2hwc d2hwc.1 2:20-27,30-34,100-112,195-203,217-225
1hri d1hri.1 2:20-27,30-34,100-112,195-203,217-225
1ruj d1ruj.1 2:20-27,30-34,100-112,195-203,217-225
1ruf d1ruf.1 2:20-27,30-34,100-112,195-203,217-225
4rhv d4rhv.1 2:20-27,30-34,100-112,195-203,217-225
1vrh d1vrh.1 2:20-27,30-34,100-112,195-203,217-225
1rud d1rud.1 2:20-27,30-34,100-112,195-203,217-225
1hrv d1hrv.1 2:20-27,30-34,100-112,195-203,217-225
2rs1 d2rs1.1 2:20-27,30-34,100-112,195-203,217-225
1rmu d1rmu.1 2:20-27,30-34,100-112,195-203,217-225
2r06 d2r06.1 2:20-27,30-34,100-112,195-203,217-225
1rui d1rui.1 2:20-27,30-34,100-112,195-203,217-225
1rug d1rug.1 2:20-27,30-34,100-112,195-203,217-225
2r07 d2r07.1 2:20-27,30-34,100-112,195-203,217-225
2r04 d2r04.1 2:20-27,30-34,100-112,195-203,217-225
2rs3 d2rs3.1 2:20-27,30-34,100-112,195-203,217-225
1ruh d1ruh.1 2:20-27,30-34,100-112,195-203,217-225
2rm2 d2rm2.1 2:20-27,30-34,100-112,195-203,217-225
2rmu d2rmu.1 2:20-27,30-34,100-112,195-203,217-225
1r09 d1r09.1 2:20-27,30-34,100-112,195-203,217-225
1rue d1rue.1 2:20-27,30-34,100-112,195-203,217-225
2rr1 d2rr1.1 2:20-27,30-34,100-112,195-203,217-225
2rs5 d2rs5.1 2:20-27,30-34,100-112,195-203,217-225
1ruc d1ruc.1 2:20-27,30-34,100-112,195-203,217-225
1r08 d1r08.1 2:20-27,30-34,100-112,195-203,217-225
1k5m d1k5m.1 B:1320-1327,1330-1334,1400-1412,1510-1518,1532-1540
1rhi d1rhi.1 2:20-27,30-34,100-112,195-203,217-225
1mqt d1mqt.1 B:20-27,30-34,100-112,196-204,218-226
1ev1 d1ev1.1 2:20-27,30-34,100-112,196-204,218-226
1oop d1oop.1 B:20-27,30-34,100-112,196-204,218-226
1cov d1cov.1 2:20-27,30-34,100-112,198-206,220-228
1pov d1pov0_ 0:89-94,99-103,169-181,273-281,295-303
1rvf d1rvf.1 2:20-27,30-34,100-112,195-203,217-231
2. i.6.1 Viruses and virus-receptor complexes
Viruses and virus-receptor complexes
1m11 d1m112_ 2:20-27,27-34,100-112,196-204,218-226
1d3i d1d3i2_ 2:20-27,30-34,100-112,195-203,217-225
1jew d1jew2_ 2:20-27,30-34,100-112,198-206,220-228
3. f.4.3 Porins
Transmembrane beta-barrels not a true fold, gathers together transmembrane barrels of different (n,S)
1po3 d1po3b_ B:146-150,159-165,188-197,209-217,504-518
1kmp d1kmpa_ A:146-150,159-165,188-197,209-217,504-518
1po3 d1po3a_ A:146-150,159-165,188-197,209-217,504-518
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 99 (enumeration index: query744.755.1830) of S5
3iyp C:19-26,29-33,99-111,195-203,217-226
3epd 2:20-27,27-34,100-112,203-211,225-233
3efm A:80-84,100-105,126-136,146-155,433-446
2x5i B:19-26,29-33,99-111,195-203,217-226
3cji C:21-28,32-36,109-121,213-221,235-243
3qwn E:70-77,99-103,131-142,178-189,201-213
3qwn L:70-77,99-103,131-142,178-189,201-213
3qwn K:70-77,99-103,131-142,178-189,201-213
1z7s 2:20-27,27-34,100-112,204-212,226-234
1z7z 2:20-27,27-34,100-112,204-212,226-234