1. c.26.2 Adenine nucleotide alpha hydrolases-like share similar mode of ligand (Adenosine group) binding ! can be subdivided into two group with closer relationships within each group than between the groups; the first three families form one group whereas the last two families form the other group !
Adenine nucleotide alpha hydrolase-like core: 3 layers, a/b/a ; parallel beta-sheet of 5 strands, order 32145
1o95 d1o95c_ C:1-7,96-112,114-120,145-151,177-183
3clu d3cluc1 C:1-7,96-112,114-120,145-151,177-183
3clt d3cltc1 C:1-7,96-112,114-120,145-151,177-183
1o96 d1o96e_ E:1-7,96-112,114-120,145-151,177-183
3clr d3clrc1 C:1-7,96-112,114-120,145-151,177-183
1o97 d1o97c_ C:1-7,96-112,114-120,145-151,177-183
3cls d3clsc1 C:1-7,96-112,114-120,145-151,177-183
1o96 d1o96q_ Q:1-7,96-112,114-120,145-151,177-183
1o94 d1o94c_ C:1-7,96-112,114-120,145-151,177-183
1o94 d1o94e_ E:1-7,96-112,114-120,145-151,177-183
1o96 d1o96a_ A:1-7,96-112,114-120,145-151,177-183
1o95 d1o95e_ E:1-7,96-112,114-120,145-151,177-183
1o96 d1o96c_ C:1-7,96-112,114-120,145-151,177-183
1efv d1efvb_ B:4-10,100-116,118-124,152-157,178-184
1t9g d1t9gs_ S:4-10,100-116,118-124,152-157,178-184
1efp d1efpb_ B:1-7,97-113,115-121,149-154,175-181
1o95 d1o95f_ F:1-7,71-87,89-95,117-125,150-156
1efp d1efpd_ D:1-7,97-113,115-121,149-154,175-181
1o95 d1o95d_ D:1-7,71-87,89-95,117-125,150-156
2a1u d2a1ub1 B:4-10,100-116,118-124,168-177,178-184
2a1u d2a1ub1 B:4-10,100-116,118-124,152-157,178-184
1efp d1efpa1 A:2-7,69-84,85-91,114-119,142-148
1efv d1efvb_ B:4-10,100-116,118-124,168-177,178-184
1o96 d1o96b1 B:1-7,71-87,89-95,118-125,150-156
1o96 d1o96d1 D:1-7,71-87,89-95,118-125,150-156
1t9g d1t9gs_ S:4-10,100-116,118-124,168-177,178-184
3clu d3clud1 D:1-7,71-87,89-95,118-125,150-156
3cls d3clsd1 D:1-7,71-87,89-95,118-125,150-156
3clr d3clrd1 D:1-7,71-87,89-95,118-125,150-156
1o97 d1o97d1 D:1-7,71-87,89-95,118-125,150-156
3clt d3cltd1 D:1-7,71-87,89-95,118-125,150-156
1efp d1efpb_ B:1-7,97-113,115-121,165-174,175-181
2a1t d2a1ts1 S:4-10,100-116,118-124,168-177,178-184
1o94 d1o94f_ F:1-7,71-87,89-95,118-125,150-156
1o94 d1o94d_ D:1-7,71-87,89-95,118-125,150-156
1o96 d1o96f1 F:1-7,71-87,89-95,118-125,150-156
1efp d1efpd_ D:1-7,97-113,115-121,165-174,175-181
1o96 d1o96z1 Z:1-7,71-87,89-95,118-125,150-156
3clu d3cluc1 C:1-7,96-112,114-120,168-176,177-183
3cls d3clsc1 C:1-7,96-112,114-120,168-176,177-183
1o97 d1o97c_ C:1-7,96-112,114-120,168-176,177-183
3clt d3cltc1 C:1-7,96-112,114-120,168-176,177-183
1o96 d1o96c_ C:1-7,96-112,114-120,168-176,177-183
1o96 d1o96a_ A:1-7,96-112,114-120,168-176,177-183
1o96 d1o96q_ Q:1-7,96-112,114-120,167-176,177-183
1o96 d1o96e_ E:1-7,96-112,114-120,167-176,177-183
3clr d3clrc1 C:1-7,96-112,114-120,167-176,177-183
1o94 d1o94e_ E:1-7,96-112,114-120,167-176,177-183
1o95 d1o95c_ C:1-7,96-112,114-120,167-176,177-183
1o94 d1o94c_ C:1-7,96-112,114-120,167-176,177-183
1o95 d1o95e_ E:1-7,96-112,114-120,167-176,177-183
2. d.157.1 Metallo-hydrolase/oxidoreductase
Metallo-hydrolase/oxidoreductase duplication of beta(4)-alpha-beta-alpha motif; 4 layers a/b/b/a; mixed beta-sheets
1vjn d1vjnb_ B:128-134,141-153,155-161,189-194,200-206
1vjn d1vjna_ A:128-134,141-153,155-161,190-194,200-207
3. c.40.1 Methylesterase CheB, C-terminal domain
Methylesterase CheB, C-terminal domain 3 layers: a/b/a, parallel beta-sheet of 7 strands, order 3421567
1a2o d1a2oa2 A:157-164,166-178,183-190,216-220,223-228
1chd d1chda_ A:157-164,166-178,184-190,216-220,223-228
4. c.77.1 Isocitrate/Isopropylmalate dehydrogenase-like the constituent families form similar dimers !
Isocitrate/Isopropylmalate dehydrogenase-like consists of two intertwined (sub)domains related by pseudo dyad; duplication ! 3 layers: a/b/a; single mixed beta-sheet of 10 strands, order 213A945867 (A=10); strands from 5 to 9 are antiparallel to the rest
1r5j d1r5jb_ B:19-24,106-118,121-126,289-298,302-306
1r5j d1r5ja_ A:19-24,106-118,121-126,289-298,302-306
1td9 d1td9f_ F:17-22,104-116,119-124,285-294,298-302
1xco d1xcod_ D:17-22,104-116,119-126,285-294,298-304
1xco d1xcob_ B:17-22,104-116,119-126,285-294,298-304
1td9 d1td9c_ C:17-22,104-116,119-126,285-294,298-304
1xco d1xcof_ F:17-22,104-116,119-126,285-294,298-304
1td9 d1td9b_ B:17-22,104-116,119-125,285-294,298-303
1td9 d1td9d_ D:17-22,104-116,119-125,285-294,298-303
2af3 d2af3c1 C:17-22,103-115,118-123,291-300,304-308
2af4 d2af4d1 D:17-22,103-115,118-125,291-300,304-310
1vmi d1vmia_ A:15-20,102-114,117-123,285-295,299-304
1td9 d1td9e_ E:17-22,104-116,119-125,285-294,298-302
1td9 d1td9a_ A:17-22,104-116,119-125,285-294,298-302
1qzt d1qztd_ D:17-22,103-115,118-123,291-300,304-308
1xco d1xcoc_ C:17-22,104-116,119-125,285-294,298-304
1xco d1xcoa_ A:17-22,104-116,119-125,285-294,298-304
2af4 d2af4c1 C:17-22,103-115,118-125,291-300,304-310
1qzt d1qztc_ C:17-22,103-115,118-123,290-300,304-308
5. c.55.1 Actin-like ATPase domain duplication contains two domains of this fold !
Ribonuclease H-like motif 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
1e4f d1e4ft1 T:8-16,52-72,78-84,127-131,184-189
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 684 (enumeration index: query80.503.2274) of S5
3l0o A:206-212,239-261,261-269,309-313,314-325
2qo3 B:558-565,618-641,645-651,708-717,779-785
3rqz C:109-115,127-139,141-147,170-176,180-187
3rqz A:109-115,127-139,141-147,170-176,180-187
3rqz B:109-115,127-139,141-147,170-176,180-187
2xnj A:116-124,193-201,215-222,246-250,250-255
3ih5 C:2-7,72-88,90-96,120-131,162-168
3ih5 A:2-7,72-88,90-96,120-131,162-168
3ih5 B:1-7,72-88,90-96,120-131,162-168
3ih5 D:1-7,72-88,90-96,120-130,162-168
3a9w A:105-113,135-156,158-165,204-209,231-237
3rj0 A:539-545,553-560,563-569,612-618,657-663
3riz A:539-545,553-560,563-569,612-618,657-663
3rgz A:539-545,553-560,563-569,612-618,657-663
2gvg F:272-278,282-296,306-312,341-345,347-353
3ajr A:105-113,135-156,158-165,204-209,231-237
3fet C:1-8,52-64,68-74,99-104,127-132
3fet B:1-8,52-64,68-74,99-104,127-132
3fet D:1-8,52-64,68-74,99-104,127-132
3fet A:1-8,52-64,68-74,97-104,127-132
3kl9 J:59-68,217-228,230-240,253-257,305-316
3kl9 E:59-68,217-228,230-240,253-257,305-316
3kl9 D:58-68,217-228,230-240,253-257,305-316
3kl9 B:59-68,217-228,230-240,253-257,305-316
3kl9 G:59-68,217-228,230-240,253-257,305-316
3kl9 I:58-68,217-228,230-240,253-257,305-316
3kl9 L:58-68,217-228,230-240,253-257,305-316
3rgx A:539-545,553-560,563-569,612-618,657-663