1. c.37.1 P-loop containing nucleoside triphosphate hydrolases division into families based on beta-sheet topologies !
P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
2p6r d2p6ra4 A:251-271,272-284,284-298,298-303,307-321
2p6u d2p6ua4 A:251-271,272-283,284-298,298-302,307-321
2. c.69.1 alpha/beta-Hydrolases many members have left-handed crossover connection between strand 8 and additional strand 9 !
alpha/beta-Hydrolases core: 3 layers, a/b/a; mixed beta-sheet of 8 strands, order 12435678, strand 2 is antiparallel to the rest
1sck d1scka_ A:81-94,113-126,179-186,198-204,211-223
1sc9 d1sc9a_ A:81-94,113-126,179-186,198-204,211-223
1scq d1scqa_ A:81-94,113-126,179-186,198-204,211-223
1yb7 d1yb7a1 A:81-94,113-126,179-186,198-204,211-223
1dwq d1dwqb_ B:81-94,113-126,180-187,199-205,212-224
3c6y d3c6ya1 A:81-94,113-126,179-186,198-204,211-223
1sci d1scia_ A:81-94,113-126,179-186,198-204,211-223
3c6z d3c6za1 A:81-94,113-126,179-186,198-204,211-223
1yb6 d1yb6a1 A:81-94,113-126,179-186,198-204,211-223
1qj4 d1qj4a_ A:81-94,113-126,179-186,198-204,211-223
3c70 d3c70a1 A:81-94,113-126,179-186,198-204,211-223
3c6x d3c6xa1 A:81-94,113-126,179-186,198-204,211-223
1eb8 d1eb8a_ A:81-94,113-126,180-187,199-205,212-224
1dwq d1dwqa_ A:81-94,113-126,180-187,199-205,212-224
1eb9 d1eb9a_ A:81-94,113-126,180-187,199-205,212-224
1e8d d1e8da_ A:81-94,113-126,180-187,199-205,212-224
1dwo d1dwoa_ A:81-94,113-126,180-187,199-205,212-224
1dwp d1dwpa_ A:81-94,113-126,180-187,199-205,212-224
2hu5 d2hu5b2 B:444-459,473-481,496-505,514-521,528-543
2hu7 d2hu7b2 B:444-459,473-481,496-505,514-521,528-543
2hu5 d2hu5a2 A:444-459,473-481,496-505,514-521,528-543
1ve6 d1ve6b2 B:444-459,473-481,496-505,514-521,528-543
1ve6 d1ve6a2 A:444-459,473-481,496-505,514-521,528-543
2hu7 d2hu7a2 A:444-459,473-481,496-505,514-521,528-543
1y7h d1y7hb_ B:82-95,114-127,182-189,201-209,214-226
1ve7 d1ve7b2 B:444-459,473-481,496-505,515-521,528-543
2pbl d2pblc1 C:137-148,170-178,186-194,204-213,215-230
2pbl d2pblb1 B:137-148,170-178,186-194,204-213,215-230
2pbl d2pbld1 D:137-148,170-178,186-194,204-213,215-230
2pbl d2pbla1 A:137-148,170-178,186-194,204-213,215-230
1ve7 d1ve7a2 A:444-459,473-481,496-504,515-521,528-543
2qr5 d2qr5a2 A:446-459,473-481,496-505,515-522,528-543
2qr5 d2qr5b2 B:446-459,473-481,496-505,515-522,528-543
2hu8 d2hu8a2 A:444-459,473-481,496-504,515-521,528-543
2hu8 d2hu8b2 B:444-459,473-481,496-504,515-522,528-543
2pky d2pkyx1 X:123-133,158-167,230-248,250-259,264-276
1hde d1hdea_ A:123-133,158-167,230-248,250-258,264-276
1hde d1hdeb_ B:123-133,158-167,230-248,250-258,264-276
1azw d1azwb_ B:109-124,139-150,219-237,257-264,270-282
1azw d1azwa_ A:109-124,139-150,219-237,257-264,270-282
1x2b d1x2ba1 A:112-127,142-153,221-239,259-266,272-284
1x2e d1x2ea1 A:112-127,142-153,221-239,259-266,272-284
1wm1 d1wm1a_ A:112-127,142-153,221-239,259-266,272-284
1qtr d1qtra_ A:112-127,142-153,221-239,259-266,272-284
1bez d1beza_ A:123-133,158-169,230-248,250-259,264-276
1bez d1beza_ A:123-133,158-169,212-229,250-259,264-276
3. a.174.1 Double Clp-N motif duplication: contains two structural repeats of 4-helical motif !
Double Clp-N motif multihelical; array
1qvr d1qvra1 A:7-25,30-40,107-120,227-232,246-262
1qvr d1qvrb1 B:7-25,30-40,107-120,227-233,246-262
4. d.32.1 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase beta-alpha-beta(3); 2 layers: alpha/beta
1tfz d1tfza2 A:294-309,318-330,334-345,346-352,399-408
1sqd d1sqda2 A:294-309,318-330,334-345,346-352,399-410
1tg5 d1tg5a2 A:294-309,318-330,334-345,346-352,399-410
1t47 d1t47a2 A:277-289,296-303,313-321,322-328,360-377
1t47 d1t47b2 B:277-289,296-303,313-321,322-328,360-377
5. a.160.1 PAP/OAS1 substrate-binding domain this domain follows the catalytic nucleotidyltransferase domain !
PAP/OAS1 substrate-binding domain core: 5-helical bundle; up-and-down; right-handed twist
1px5 d1px5b1 B:189-200,201-223,228-245,296-300,312-330
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 1185 (enumeration index: query809.1057) of S5
3llc A:114-130,147-157,185-196,206-215,220-231
3pf8 B:107-120,132-142,166-176,188-196,201-212
3r40 B:110-124,137-145,224-237,243-250,260-269
3qyj A:105-118,131-139,216-226,232-240,249-258
3qyj B:104-118,131-139,216-226,232-240,249-259
3qmv C:108-124,138-146,179-193,204-212,217-228
3qmv A:108-124,138-146,176-193,204-212,217-228
3qmv B:108-124,138-146,179-193,204-212,217-228
3qf7 A:144-151,710-739,768-788,792-798,804-822
3qf7 B:144-151,712-739,768-788,792-798,804-821
2rjb B:6-27,26-48,58-66,222-229,231-243
2rjb D:6-27,26-48,58-66,222-229,231-243
3r41 B:111-124,137-145,224-237,243-251,259-269
2va8 A:254-272,275-290,293-307,307-312,316-330
2va8 B:254-272,275-290,293-307,307-312,316-330
1y37 B:104-118,131-139,217-227,233-242,250-259
2zj5 A:246-262,266-280,283-296,296-301,305-319
2d2f A:73-81,114-130,145-161,163-170,175-190
2z41 A:246-262,266-280,283-295,295-300,305-319
3azp A:510-525,538-545,565-573,583-591,597-609
3azp B:510-525,538-545,565-573,583-591,597-609
4a2w A:528-560,560-579,594-605,630-636,637-651
2zj2 A:246-262,266-280,283-296,296-301,305-319
3r3z A:111-124,137-145,224-237,243-250,259-269
3r3z C:110-124,137-145,224-237,243-250,259-269
2wfl B:88-101,120-132,188-195,207-215,220-232
2wfm E:88-101,120-132,188-195,207-215,220-232
2wfm B:88-101,120-133,188-195,207-215,220-232
2wfm D:88-101,120-133,188-195,207-215,220-232
2wfm C:88-101,120-133,188-195,207-215,220-232
3tho A:144-151,710-739,768-788,792-798,804-822
2zj8 A:246-259,266-280,283-296,296-301,305-319
4a2q B:528-560,560-579,594-604,630-636,637-651
3r3v B:110-124,137-145,224-237,243-251,259-269
2d2e A:73-81,114-130,147-161,163-170,175-190
2r5v B:248-260,267-279,284-292,293-298,331-348
2r5v A:248-260,267-279,284-292,293-298,331-348
2xgj A:415-430,433-452,458-471,471-476,480-494
2xgj B:415-430,433-452,458-471,471-476,480-494
3o4i A:444-459,473-481,496-505,514-522,528-543
3o4i B:444-459,473-481,496-505,514-522,528-543
3o4g A:444-459,473-481,496-504,515-522,528-543
3o4g D:444-459,473-481,496-505,514-522,528-543
3o4g C:444-459,473-481,496-504,515-522,528-543
3o4g B:444-459,473-481,496-505,514-522,528-543
3l9o A:415-427,439-447,458-471,471-476,480-494
3l9o A:415-427,447-456,458-471,471-476,480-494
3azo A:510-525,538-545,565-573,583-591,597-609
3azo B:510-525,538-545,565-573,583-591,597-609
3azq A:510-525,538-545,551-560,583-591,597-609
3azq A:510-525,538-545,565-573,583-591,597-609
2wtn B:106-119,131-141,166-176,188-196,201-213
2wtn A:106-119,131-141,166-177,188-196,201-213
3r3u D:110-124,137-145,224-237,243-250,259-269
3r3u A:110-124,137-145,224-237,243-250,259-269
3r3u B:110-124,137-145,223-237,243-250,260-269
3r3u C:110-124,137-145,223-237,243-250,259-269
3o4j C:444-459,473-481,496-504,515-522,528-543
3o4j D:444-459,473-481,496-505,514-522,528-543
3o4j B:444-459,473-481,496-505,515-522,528-543
3o4j A:444-459,473-481,496-504,515-522,528-543
3r3w B:110-124,137-145,224-237,243-250,259-269
3r3y B:111-124,137-145,224-237,243-251,259-269
2wtm A:106-119,131-141,166-176,186-196,201-213
2wtm B:106-119,131-141,166-177,188-196,201-213
2wtm D:106-119,131-141,166-177,188-196,201-213
2wtm C:106-119,131-141,166-176,186-195,201-213
2veo B:183-202,217-226,230-246,324-332,338-353
2veo A:183-202,217-226,230-246,324-332,338-353
3o4h A:444-459,473-481,496-504,514-522,528-543
3o4h B:444-459,473-481,496-505,514-522,528-543
3o4h D:444-459,473-481,496-505,514-522,528-543
3o4h C:444-459,473-481,496-505,514-522,528-543
3r3x A:110-124,137-145,223-237,243-251,259-268
3r3x B:110-124,137-145,224-237,243-251,260-269
2zja A:246-260,266-280,283-296,296-301,305-319
3gzj E:88-101,120-132,188-195,207-215,220-232
3gzj C:88-101,120-133,188-195,207-215,220-232
3gzj B:88-101,120-132,188-195,207-215,220-232
3guu B:183-202,217-226,230-246,324-332,338-353
3guu A:183-202,217-226,230-246,324-332,338-353
1sp9 B:315-330,339-351,355-366,367-373,420-437