1. c.73.1 Carbamate kinase-like the sheet topology is similar to those of undecaprenyl diphosphate synthase and the N-terminal domain of phosphoglycerate kinase !
Carbamate kinase-like 3 layers: a/b/a; mixed (mainly parallel) beta-sheet of 8 strands, order 34215786; strand 8 is antiparallel to the rest
2brx d2brxb1 B:119-132,163-173,185-196,198-203,220-224
2brx d2brxa1 A:119-132,163-173,185-196,198-203,220-224
2bri d2brib1 B:119-132,163-172,185-196,198-203,220-224
2buf d2buff1 F:197-210,235-246,249-266,268-274,292-296
2bty d2btya1 A:180-193,217-228,231-248,250-257,274-278
2bmu d2bmua1 A:119-132,163-172,185-196,198-203,220-224
2bri d2bria1 A:119-132,163-172,185-196,198-203,220-224
2bmu d2bmub1 B:119-132,163-172,185-196,198-203,220-224
2ij9 d2ij9a1 A:115-128,159-169,181-192,194-199,215-219
2bty d2btyc1 C:180-193,217-228,231-248,250-256,274-278
2hmf d2hmfa1 A:208-222,253-264,269-280,282-287,295-299
2hmf d2hmfb1 B:208-222,253-264,269-280,282-287,295-299
2hmf d2hmfd1 D:208-222,253-264,269-280,282-287,295-299
2hmf d2hmfc1 C:208-222,253-264,269-280,282-287,295-299
1e19 d1e19b_ B:214-227,256-267,270-288,290-296,309-313
1e19 d1e19a_ A:214-227,256-267,270-288,290-296,309-313
2bty d2btyb1 B:180-193,217-228,231-248,250-256,274-278
2buf d2bufa1 A:197-210,235-246,249-266,268-274,292-297
2ij9 d2ij9b1 B:115-128,159-170,181-192,194-199,215-219
2buf d2bufd1 D:197-210,235-246,249-266,268-274,292-296
2ap9 d2ap9c1 C:194-207,235-246,247-264,266-273,290-294
2ap9 d2ap9d1 D:194-207,235-243,247-264,266-272,290-294
1b7b d1b7bc_ C:208-221,250-261,264-283,285-290,302-306
2ap9 d2ap9a1 A:194-207,235-246,247-264,266-273,290-294
2v4y d2v4yb1 B:144-157,188-196,201-212,214-219,236-240
2v4y d2v4yc1 C:144-157,188-196,201-212,214-219,236-240
2v4y d2v4ye1 E:144-157,188-196,201-212,214-219,236-240
2v4y d2v4yf1 F:144-157,188-196,201-212,214-219,236-240
2v4y d2v4yd1 D:144-157,188-196,201-212,214-219,236-240
2v4y d2v4ya1 A:144-157,188-196,201-212,214-219,236-240
2buf d2bufg1 G:197-210,235-246,249-266,268-274,292-296
2ap9 d2ap9e1 E:194-207,235-246,247-264,266-273,290-294
2ap9 d2ap9f1 F:194-207,235-243,247-264,266-273,290-295
2ap9 d2ap9b1 B:194-207,235-246,247-264,266-273,290-295
2bnf d2bnfa1 A:144-157,188-196,201-212,214-219,236-240
2bnd d2bndb1 B:144-157,188-196,201-212,214-219,236-240
2bne d2bneb1 B:144-157,188-196,201-212,214-219,236-240
2bne d2bnea1 A:144-157,188-196,201-212,214-219,236-240
2buf d2bufc1 C:197-210,235-246,249-266,268-274,292-296
2buf d2bufj1 J:197-210,235-246,249-266,268-274,292-296
2bnf d2bnfb1 B:144-157,188-196,201-212,214-219,236-240
2j0x d2j0xa1 A:199-213,244-252,260-271,272-278,286-290
1ybd d1ybdc1 C:144-157,188-196,201-212,214-219,236-240
1b7b d1b7bb_ B:208-221,250-261,264-283,285-291,302-306
2a1f d2a1fd1 D:141-154,185-193,198-209,211-216,233-237
1b7b d1b7ba_ A:208-221,250-261,264-283,285-291,302-306
2bnd d2bnda1 A:144-157,188-196,201-212,214-219,236-240
2j0x d2j0xb1 B:199-213,244-252,260-271,272-278,286-290
1ybd d1ybdb1 B:144-157,188-196,201-212,214-219,236-240
2a1f d2a1fe1 E:141-154,185-193,198-209,211-216,233-237
2a1f d2a1ff1 F:141-154,185-193,198-209,211-216,233-237
2buf d2bufi1 I:197-210,235-246,249-267,268-274,292-296
2a1f d2a1fc1 C:141-154,185-193,198-209,211-216,233-237
2j0w d2j0wa1 A:199-213,244-255,260-271,273-278,286-291
1b7b d1b7bd_ D:208-221,250-261,264-283,285-291,302-306
2a1f d2a1fa1 A:141-154,185-193,198-209,211-216,233-237
2a1f d2a1fb1 B:141-154,185-193,198-209,211-216,233-237
2buf d2bufk1 K:197-210,235-246,249-266,268-274,292-296
1gsj d1gsja_ A:160-173,197-208,211-229,231-236,253-257
1gs5 d1gs5a_ A:160-173,197-208,211-229,231-236,253-257
1ybd d1ybda1 A:144-157,188-196,201-212,214-219,236-240
2buf d2bufh1 H:197-210,235-246,249-266,268-275,292-296
2buf d2bufl1 L:197-210,235-246,249-266,268-274,292-296
1z9d d1z9da1 A:142-155,187-195,200-211,212-219,235-239
1z9d d1z9dc1 C:142-155,187-195,200-211,212-219,235-239
1z9d d1z9db1 B:142-155,187-195,200-211,212-219,235-239
1ohb d1ohba_ A:160-173,197-208,211-229,230-236,253-258
2buf d2bufe1 E:197-210,235-246,249-266,268-274,292-296
1oh9 d1oh9a_ A:160-173,197-208,211-229,230-236,253-258
1oha d1ohaa_ A:160-173,197-208,211-229,230-236,253-258
2cdq d2cdqb1 B:231-245,276-284,292-303,305-311,318-322
2cdq d2cdqa1 A:231-245,276-284,292-303,305-311,318-322
2buf d2bufb1 B:197-210,235-246,249-266,268-274,292-297
2. e.8.1 DNA/RNA polymerases "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain !
DNA/RNA polymerases divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
1cez d1ceza_ A:437-445,453-469,507-525,807-811,812-818
1s76 d1s76d_ D:437-445,453-469,507-525,807-811,812-817
1s77 d1s77d_ D:437-445,453-469,507-525,807-811,812-817
1s0v d1s0va_ A:437-445,453-469,507-525,807-811,812-817
1h38 d1h38c_ C:437-445,453-469,507-525,807-811,812-817
1msw d1mswd_ D:437-445,453-469,507-525,807-811,812-817
1qln d1qlna_ A:437-445,453-469,507-525,807-811,812-817
1s0v d1s0vb_ B:437-445,453-469,507-525,807-811,812-817
2pi5 d2pi5a1 A:437-445,453-469,507-525,807-811,812-817
1s0v d1s0vc_ C:437-445,453-469,507-525,807-811,812-817
3. e.11.1 Type II DNA topoisomerase
Type II DNA topoisomerase 4 domains: (1) toprim alpha/beta; (2) "winged helix"-like; (3) alpha+beta; (4) all-alpha
2rgr d2rgra1 A:700-714,720-733,737-750,804-809,810-816
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 1160 (enumeration index: query810) of S5
2e9y B:215-228,257-268,271-290,292-297,310-314
2e9y A:215-228,257-268,271-290,292-297,310-314
2j5t A:148-161,193-201,212-228,228-235,252-258
2j5t G:148-161,193-201,212-228,228-235,252-258
3l86 A:158-171,195-206,209-226,228-234,239-244
3aaw A:153-166,197-209,213-224,226-231,238-242
3aaw C:153-166,197-208,213-224,226-231,238-242
3c3l A:436-444,457-472,528-544,946-950,951-956
3c3l B:436-443,457-472,528-544,946-950,951-956
3f2b A:868-887,893-900,899-906,1052-1057,1095-1102
3k4y B:158-171,195-206,218-229,230-236,253-258
3d40 A:148-161,194-205,211-227,228-234,257-262
3c1m B:208-222,253-264,269-280,282-287,295-299
3c1m A:208-222,253-264,269-280,282-287,295-299
3c1m D:208-222,253-264,269-280,282-287,295-299
3c1m C:208-222,253-264,269-280,282-287,295-299
2r98 A:185-198,223-234,235-252,254-260,278-282
2r7v A:236-255,281-299,300-314,513-521,666-672
3d2m A:185-198,223-234,235-252,254-260,278-282
3c2p B:436-443,457-472,528-544,946-950,951-956
3c2p A:436-444,457-472,528-544,946-950,951-956
3qun A:148-161,194-201,211-227,228-234,257-262
3tvi D:186-199,230-241,246-257,258-264,272-277
3tvi E:185-199,230-241,246-257,259-265,272-276
3tvi H:185-199,230-241,250-257,258-265,272-276
3tvi G:185-199,230-239,246-254,259-265,272-276
3tvi J:185-199,230-241,246-257,259-264,272-276
3spa A:818-826,834-850,890-907,1146-1150,1151-1156
3d41 A:148-161,194-201,211-227,228-234,257-262
3nwy D:164-177,208-216,221-232,234-239,256-260
3nwy C:164-177,208-216,221-232,234-239,256-260
3nwy A:164-177,208-216,221-232,233-239,256-261
3nwy F:164-177,208-216,221-232,234-239,256-260
3nwy E:164-177,208-216,221-232,234-239,256-260
3nwy B:164-177,208-216,221-232,234-239,256-260
3kzf C:215-228,257-268,273-290,291-297,310-314
3kzf B:215-228,257-268,273-290,291-297,310-315
3kzf D:215-228,257-268,270-290,291-297,310-315
3kzf A:215-228,257-268,274-290,291-297,310-315
2j4k B:118-131,162-169,185-196,197-203,220-225
2j4k A:118-131,162-170,185-196,197-203,220-225
3k4o B:158-171,195-206,217-229,230-236,253-258
3k4o A:158-171,195-209,216-229,230-236,253-258
2j4l B:118-131,162-169,185-196,197-203,220-225
2j4l G:118-131,162-170,185-196,197-203,220-225
2j4l L:118-131,162-170,185-196,197-203,220-225
2j4l K:118-131,162-169,185-196,197-203,220-225
2j4l I:118-131,162-169,185-196,197-203,220-225
2j4l E:118-131,162-170,185-196,197-203,220-225
2j4l C:118-131,162-171,185-196,197-203,220-225
2j4l F:118-131,162-171,185-196,197-203,220-225
2j4l D:118-131,162-169,185-196,197-203,220-225
2j4l J:118-131,162-169,185-196,197-203,220-225
2j4l A:118-131,162-169,185-196,197-204,220-225
3n9m A:259-266,374-383,402-413,419-423,480-489
3n9m C:259-266,374-383,402-413,419-423,480-489
3q23 B:436-444,457-472,528-544,946-950,951-956
3q23 A:436-444,457-472,528-544,946-950,951-956
2ogx A:169-182,215-223,229-239,243-249,266-271
2ogx B:168-181,212-220,227-237,241-247,264-269
3ek6 A:141-154,185-193,198-209,211-216,233-237
3ek6 E:141-154,185-193,198-209,211-216,233-237
3ek6 F:141-154,185-193,198-209,211-216,233-237
3ek6 D:141-154,185-193,198-209,211-216,233-237
3ek6 B:141-154,185-193,198-209,211-216,233-237
3ek6 C:141-154,185-193,198-209,211-216,233-237
3q0a A:436-443,457-472,528-544,946-950,951-957
3q0a B:436-444,457-472,528-544,946-950,951-956
3pur A:259-266,374-383,402-413,419-423,480-489
3pur C:259-266,374-383,402-413,419-423,480-489
2wxb B:160-173,197-208,212-229,230-236,253-258
2wxb A:160-173,197-208,211-229,231-236,253-257
3ab2 E:151-166,197-209,213-224,226-231,238-242
3ab2 O:152-166,197-209,213-224,226-231,238-242
3ab2 G:152-166,197-209,213-224,226-231,238-242
3ab2 K:152-166,197-209,213-224,226-231,238-242
3ab2 M:152-166,197-209,213-224,226-231,238-242
3ab2 C:153-166,197-209,213-224,226-231,238-242
3ab2 A:152-166,197-209,213-224,226-231,238-242
3ab2 I:154-166,197-209,213-224,226-231,238-242
2r7q A:236-255,281-299,300-314,513-521,666-672
3ek5 E:141-154,185-193,198-209,211-216,233-237
3ek5 A:141-154,185-193,198-209,211-216,233-237
3ek5 B:141-154,185-193,198-209,211-216,233-237
3ek5 C:141-154,185-193,198-209,211-216,233-237
3ek5 F:141-154,185-193,198-209,211-216,233-237
3ek5 D:141-154,185-193,198-209,211-216,233-237
3l76 A:150-167,198-206,214-225,227-232,239-243
3l76 B:150-167,198-206,214-225,227-232,239-243
3ab4 O:153-166,197-208,213-224,226-231,238-242
3ab4 C:153-166,197-208,213-224,226-231,238-242
3ab4 A:153-166,197-208,213-224,226-231,238-242
3ab4 M:153-166,197-209,213-224,226-231,238-242
3ab4 E:153-166,197-208,213-224,226-231,238-242
3ab4 G:153-166,197-209,213-224,226-231,238-242
3ab4 I:154-166,197-209,213-224,226-231,238-242
3ab4 K:153-166,197-208,213-224,226-231,238-242
3k52 B:158-171,195-207,217-229,230-237,253-258
3qur A:148-161,194-205,211-227,228-234,257-262
2r7o A:236-256,281-299,300-314,513-521,666-672
3qvh A:148-161,194-204,211-227,228-234,257-262
3c46 B:436-444,457-472,528-544,946-950,951-956
3c46 A:436-443,457-472,528-544,946-950,951-956
3d2p A:185-198,223-234,235-252,254-260,278-282
3d2p B:185-198,223-234,235-252,254-260,278-282
2po4 A:436-443,457-472,528-544,946-950,951-956
2x2w A:160-173,197-208,211-229,231-236,253-257
2x2w B:160-173,197-208,211-229,230-236,253-258
2w21 A:147-161,193-202,213-228,229-235,252-257
2r7x B:236-255,281-299,300-314,513-521,666-672
2r7x A:236-255,281-299,300-314,513-521,666-672
3q22 A:436-444,457-472,528-544,946-950,951-956
3q22 B:436-444,457-472,528-544,946-950,951-956
2ji5 B:119-132,163-172,185-196,198-203,220-224
2ji5 A:119-132,163-173,185-196,198-203,220-224
2l8k A:10-24,37-56,57-71,98-110,111-122
2r8v A:185-198,223-234,235-252,254-260,278-282
3quo A:148-161,194-205,212-227,228-234,257-262
3f2d A:868-887,893-900,899-906,1052-1057,1095-1102
3c20 B:208-222,253-262,269-280,282-288,295-299
3c20 A:208-222,253-262,269-280,282-288,295-299
2rd5 B:194-207,235-246,249-266,268-274,292-296
2rd5 A:194-207,235-246,249-266,268-274,291-297
2we5 C:208-221,250-261,264-283,285-291,305-309
2we5 B:208-221,250-261,264-283,285-291,305-309
2we5 A:208-221,250-261,264-283,285-291,305-309
2r7w A:236-255,281-299,300-314,513-521,666-672
3qvf A:148-161,194-201,211-227,228-234,257-262
2r7s A:236-255,281-299,300-314,513-521,666-672
3puq A:259-266,374-383,402-413,419-427,480-489
3b8g A:185-198,223-234,235-252,254-260,278-282
2v5h B:187-200,228-239,242-259,261-267,284-289
2v5h E:187-200,228-239,242-259,261-267,284-290
2v5h D:187-200,228-239,242-259,261-267,284-289
2v5h A:187-200,228-239,242-259,261-267,284-290
2v5h C:187-200,228-239,242-259,261-267,284-289
2v5h F:187-200,228-239,242-259,261-267,284-290
2j4j F:118-131,162-171,185-196,197-203,220-225
2j4j E:118-131,162-171,185-196,197-203,220-225
2j4j B:118-131,162-171,185-196,197-203,220-225
2j4j D:118-131,162-171,185-196,197-203,220-225
2j4j C:118-131,162-171,185-196,197-203,220-225
2j4j A:118-131,162-171,185-196,197-203,220-225
2r7t A:236-255,281-299,300-314,513-521,666-672
2r7u A:236-255,281-299,300-314,513-521,666-672
2we4 B:208-221,250-261,264-283,285-291,305-309
2we4 D:208-221,250-261,264-283,285-291,305-309
2we4 A:208-221,250-261,264-283,285-291,305-309
2we4 C:208-221,250-261,264-283,285-291,305-309
3c1n C:208-222,253-262,269-280,282-287,295-299
3c1n D:208-222,253-262,269-280,282-287,295-299
3c1n A:208-222,253-262,269-280,282-287,295-299
3c1n B:208-222,253-262,269-280,282-288,295-299
2va1 A:137-150,182-190,195-206,207-214,230-234
2va1 C:137-150,182-190,195-206,207-214,230-234
2va1 B:137-150,182-190,195-206,207-214,230-234
2va1 F:137-150,182-190,195-206,207-214,230-234
2va1 E:137-150,182-190,195-206,207-214,230-234
2va1 D:137-150,182-190,195-206,207-214,230-234
3t7b B:159-172,196-207,210-228,230-235,252-256
3t7b A:159-172,196-207,210-228,229-235,252-257
2jjx C:140-153,185-193,198-209,211-217,233-237
2jjx A:140-153,185-193,198-209,211-217,233-237
2jjx B:140-153,185-193,198-209,211-217,233-237
3lpx B:42-56,65-79,82-94,144-148,153-157
2jj4 C:187-200,228-239,242-259,261-267,284-290
2jj4 B:187-200,228-239,242-259,261-267,284-290
2jj4 A:187-200,228-239,242-259,261-267,284-290
2r7r A:236-255,281-299,300-314,513-521,666-672
3q24 A:436-443,457-472,528-544,946-950,951-956
3q24 B:436-444,457-472,528-544,946-950,951-956
2aga A:19-29,59-70,81-93,115-122,166-172
3k56 A:158-171,195-209,216-229,230-236,253-258
3k56 B:158-171,195-207,218-229,230-236,253-258