1. b.97.1 Cytolysin/lectin some topological similarity to osmotin !
Cytolysin/lectin sandwich, 10 strands in 2 sheets;
1x99 d1x99a_ A:3-14,20-29,32-41,42-50,136-145
1x99 d1x99b_ B:3-14,19-29,32-41,42-50,136-145
1y2v d1y2vb_ B:2-12,18-26,29-38,39-47,134-143
1y2u d1y2ub_ B:2-12,18-26,29-38,39-47,134-143
1y2w d1y2wa_ A:2-12,18-26,29-38,39-47,134-143
1y2v d1y2va_ A:2-12,18-26,29-38,39-47,134-143
1y2w d1y2wb_ B:2-12,18-26,29-38,39-47,134-143
1y2t d1y2tb_ B:2-12,18-26,29-38,39-47,134-143
1y2u d1y2ua_ A:2-12,18-26,29-38,39-47,134-143
1y2x d1y2xd_ D:2-12,18-26,29-38,40-47,134-143
1y2x d1y2xa_ A:2-12,18-26,29-38,40-47,134-143
1y2x d1y2xc_ C:2-12,18-26,31-38,40-46,134-143
1y2x d1y2xb_ B:2-12,18-26,31-38,40-46,134-143
1y2t d1y2ta_ A:2-12,18-26,32-38,39-46,134-143
2. b.121.1 PHM/PNGase F members of this superfamily bind peptide substrates ! duplication: consists of two domains of this fold packed together like the adjacent nucleoplasmin subunits !
Nucleoplasmin-like/VP (viral coat and capsid proteins) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands ! characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
1yjl d1yjla2 A:199-209,220-230,233-244,314-325,330-335
1yjk d1yjka2 A:199-209,219-230,233-244,313-325,330-335
1phm d1phma2 A:199-209,217-230,233-244,313-325,330-335
3phm d3phma2 A:199-209,217-230,233-244,313-325,330-335
1sdw d1sdwa2 A:199-209,217-230,233-244,313-325,330-335
1opm d1opma2 A:199-209,217-230,233-244,313-325,330-335
1yi9 d1yi9a2 A:199-209,219-230,233-244,314-325,330-335
1yip d1yipa2 A:199-209,217-230,233-244,312-325,330-335
3. b.3.1 Starch-binding domain-like
Prealbumin-like sandwich; 7 strands in 2 sheets, greek-key ! variations: some members have additional 1-2 strands to common fold
2j73 d2j73a1 A:6-16,23-32,44-48,49-59,89-97
2fhc d2fhca3 A:52-60,74-81,103-107,108-117,149-154
2j73 d2j73b1 B:6-16,23-32,44-48,49-59,89-97
2j72 d2j72a1 A:6-16,23-32,44-48,49-59,89-97
2j71 d2j71a1 A:5-15,22-31,43-47,48-58,88-96
2j72 d2j72b1 B:6-16,23-32,44-48,49-59,89-97
2fhb d2fhba3 A:52-60,74-80,103-107,108-117,149-154
1vem d1vema1 A:418-428,434-444,459-463,464-475,510-516
1itc d1itca1 A:418-428,434-442,459-463,464-475,509-516
1ven d1vena1 A:418-428,434-444,459-463,464-475,510-516
1b9z d1b9za1 A:418-428,434-444,459-463,464-475,510-516
1b90 d1b90a1 A:418-428,434-444,459-463,464-475,510-516
2j44 d2j44a2 A:8-16,24-32,50-54,55-64,97-103
2j43 d2j43b1 B:8-16,25-33,51-55,56-65,98-104
2fhf d2fhfa3 A:52-62,74-80,103-107,108-117,149-154
2j43 d2j43a1 A:7-15,24-32,50-54,55-64,97-103
5bca d5bcac1 C:418-428,434-442,459-463,464-475,509-516
1j11 d1j11a1 A:418-428,434-442,459-463,464-475,509-516
5bca d5bcad1 D:418-428,434-444,459-463,464-475,509-516
1j11 d1j11c1 C:418-428,434-444,459-463,464-475,510-516
1j0z d1j0za1 A:418-428,434-444,459-463,464-475,509-516
1j12 d1j12a1 A:418-428,434-442,459-463,464-475,509-516
1j0z d1j0zd1 D:418-428,434-442,459-463,464-475,510-516
1j0z d1j0zc1 C:418-428,434-444,459-463,464-475,510-516
1j0y d1j0yc1 C:418-428,434-444,459-463,464-475,510-516
1j0y d1j0yd1 D:418-428,434-442,459-463,464-475,510-516
1j12 d1j12b1 B:418-428,434-444,459-463,464-475,510-516
1j10 d1j10d1 D:418-428,434-444,459-463,464-475,510-516
1j0y d1j0yb1 B:418-428,434-444,459-463,464-475,510-516
1j11 d1j11b1 B:418-428,434-444,459-463,464-475,509-516
1j11 d1j11d1 D:418-428,434-442,459-463,464-475,510-516
1j12 d1j12d1 D:418-428,434-444,459-463,464-475,510-516
5bca d5bcaa1 A:418-428,434-444,459-463,464-475,510-516
1j0z d1j0zb1 B:418-428,434-442,459-463,464-475,510-516
1j0y d1j0ya1 A:418-428,434-444,459-463,464-475,510-516
1j10 d1j10a1 A:418-428,434-444,459-463,464-475,510-516
4. d.41.1 CO dehydrogenase molybdoprotein N-domain-like
alpha/beta-Hammerhead core: beta-BETA-alpha-beta-BETA-beta-alpha; contains a beta-hammerhead motif similar to that in barrel-sandwich hybrids
1n5x d1n5xa3 A:601-612,614-622,630-636,661-673,821-827
1n5x d1n5xb3 B:601-612,614-622,630-636,661-673,821-827
1n62 d1n62b1 B:48-59,61-69,77-83,112-124,293-299
1n60 d1n60b1 B:48-59,61-69,77-83,112-124,293-299
1n5w d1n5wb1 B:48-59,61-69,77-83,112-124,293-299
1zxi d1zxib1 B:48-59,61-69,77-83,112-124,293-299
1n63 d1n63b1 B:48-59,61-69,77-83,112-124,293-299
1n61 d1n61b1 B:48-59,61-69,77-83,112-124,293-299
1n63 d1n63e1 E:48-59,61-69,77-83,112-124,293-299
1n61 d1n61e1 E:48-59,61-69,77-83,112-124,293-299
1n5w d1n5we1 E:48-59,61-69,77-83,112-124,293-299
1n60 d1n60e1 E:48-59,61-69,77-83,112-124,293-299
1n62 d1n62e1 E:48-59,61-69,77-83,112-124,293-299
3b9j d3b9jc1 C:602-612,614-622,630-636,661-673,822-827
1ffv d1ffvb1 B:46-56,58-66,74-80,109-121,290-296
1ffu d1ffub1 B:46-56,58-66,74-80,109-121,290-296
1v97 d1v97a3 A:602-612,614-622,630-636,661-673,821-827
1ffu d1ffue1 E:46-56,58-66,74-80,109-121,290-296
1ffv d1ffve1 E:46-56,58-66,74-80,109-121,290-296
1fo4 d1fo4a3 A:602-612,614-622,630-636,661-673,821-827
1jrp d1jrpf1 F:32-42,44-52,60-66,92-104,252-257
1vdv d1vdva3 A:602-612,614-622,630-636,661-673,821-827
5. b.121.6 Group I dsDNA viruses
Nucleoplasmin-like/VP (viral coat and capsid proteins) sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands ! characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
1dzl d1dzla_ A:68-78,95-111,153-161,327-336,446-452
6. b.82.1 RmlC-like cupins
Double-stranded beta-helix one turn of helix is made by two pairs of antiparallel strands linked with short turns ! has appearance of a sandwich of distinct architecture and jelly-roll topology
1ey2 d1ey2a_ A:144-150,152-160,162-168,187-193,242-250
1eyb d1eyba_ A:144-150,152-160,162-168,187-193,242-250
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 110 (enumeration index: query842.843) of S5
3i8e A:3-14,358-366,1024-1033,1034-1043,1087-1091
3i8e B:3-14,358-366,1024-1033,1034-1043,1087-1091
3gld A:172-184,191-199,206-216,241-249,296-306
3gld B:172-184,191-199,206-216,239-249,296-306
3gld C:172-184,191-199,206-216,241-249,296-306
3qdt A:1-11,17-26,29-38,39-47,133-142
3qdt B:1-11,17-26,29-38,39-47,133-142
3eub 4:602-612,614-622,630-636,661-673,821-827
3eub L:602-610,613-622,630-636,665-673,821-827
3eub U:602-612,614-622,630-636,661-673,821-827
3eub C:602-612,614-622,630-636,661-673,821-827
3mll A:199-209,217-230,233-244,313-325,330-335
2e1q C:603-613,615-623,631-637,662-674,822-828
2e1q D:603-613,615-623,631-637,662-674,822-828
2e1q B:603-613,615-623,631-637,662-674,822-828
2e1q A:603-613,615-623,631-637,662-674,822-828
3qdx A:1-11,17-26,29-38,39-47,133-142
3qdx B:1-11,17-26,29-38,39-47,133-142
3oep A:76-87,141-148,147-154,168-175,193-200
2c3h B:4-12,19-28,41-45,47-55,84-88
2c3h D:5-12,19-27,41-45,47-54,84-88
2c3h E:5-12,19-28,41-45,47-54,84-88
2ya1 A:136-144,152-160,178-182,183-192,225-231
2xvo C:13-19,42-46,71-76,98-106,142-148
2xvo C:13-19,24-31,71-76,98-106,142-148
2xvo D:14-18,24-31,71-76,98-105,142-148
2xvo D:14-18,42-47,71-76,98-105,142-148
2xvo A:13-19,56-62,71-76,98-107,142-148
2xvo B:13-19,24-31,71-76,98-106,142-148
2xvo B:13-19,42-46,71-76,98-106,142-148
2xvo C:13-19,56-62,71-76,98-106,142-148
2vn7 A:495-505,510-520,533-540,541-553,589-597
2w3r F:32-42,44-52,60-66,92-104,252-257
3nvy L:602-610,613-622,630-636,665-673,821-827
3nvy C:602-612,614-622,630-636,661-673,821-827
2x5q A:9-15,32-38,54-60,78-86,115-124
2x5q B:9-15,33-38,54-60,78-86,115-123
2x5q B:9-15,19-23,54-60,78-86,115-123
2x5q A:9-15,19-23,54-60,78-86,115-124
3nvz L:602-610,613-622,630-636,665-673,821-827
3nvz C:602-612,614-622,630-636,661-673,821-827
3an1 B:601-612,614-622,630-636,661-673,821-827
3an1 A:602-612,614-622,630-636,661-673,821-827
3nrz C:602-612,614-622,630-636,661-673,821-827
3nrz L:602-612,614-622,630-636,661-673,821-827
3gle C:172-184,191-199,206-216,239-249,295-306
3gle B:172-183,191-199,208-217,240-249,296-305
3gle A:172-184,191-199,206-216,239-249,296-306
3qdy A:1-11,17-26,29-38,39-47,133-142
3qdy B:1-11,17-26,29-38,39-47,133-142
3bws A:50-60,63-69,75-82,83-93,123-128
3bws B:50-60,63-69,75-82,83-93,123-128
3mif A:199-209,217-230,233-244,313-325,330-335
3opf B:77-87,141-148,147-154,168-175,192-200
3mih A:199-209,217-230,233-244,313-325,330-335
2ofe B:1-11,17-25,28-37,38-46,132-141
2ofe A:1-11,16-25,28-37,38-46,132-141
3hrd E:36-46,48-56,64-70,96-108,261-266
3hrd A:36-46,48-56,64-70,96-108,261-266
2b5m A:3-9,358-366,1024-1033,1034-1043,1087-1091
3mj9 A:17-27,59-64,70-74,80-88,140-144
3mj9 A:17-27,34-44,70-74,80-88,140-144
3mib A:199-209,217-230,233-244,313-325,330-335
3sr6 C:601-612,614-622,630-636,661-673,821-827
3sr6 L:601-612,614-622,630-636,661-673,821-827
2r5j A:68-78,95-110,153-161,325-334,446-452
2r5j I:68-78,95-110,153-161,325-334,446-452
2r5j M:68-78,95-110,153-161,325-334,446-452
2r5j H:68-78,95-110,153-161,325-334,446-452
2r5j C:68-78,95-110,153-161,325-334,446-452
2r5j F:68-78,95-110,153-161,325-334,446-452
2r5j B:68-78,95-110,153-161,325-334,446-452
2r5j D:68-78,95-110,153-161,325-334,446-452
2r5j E:68-78,95-110,152-161,325-334,446-452
2r5j L:68-78,95-110,153-161,325-334,446-452
2r5j N:68-78,95-110,153-161,325-334,446-452
2r5j O:68-78,95-110,152-161,325-334,446-452
2r5j G:68-78,95-110,153-161,325-334,446-452
2r5j K:68-78,95-110,153-161,325-334,446-452
2r5j J:68-78,95-110,153-161,325-334,446-452
3ns1 L:602-610,613-622,630-636,665-673,821-827
3ns1 C:602-610,613-622,630-636,665-673,821-827
3mig A:199-209,217-230,233-244,313-325,330-335
3mic A:199-209,217-230,233-244,313-325,330-335
1xi0 B:4-14,20-29,32-41,42-50,136-145
1xi0 A:3-14,19-29,32-41,42-50,136-145
3mie A:199-209,217-230,233-244,313-325,330-335
3etr N:602-612,614-622,630-636,661-673,821-827
3b2m B:172-184,191-199,206-216,241-249,296-306
3b2m C:172-184,191-199,206-216,241-249,296-306
3b2m A:172-184,191-199,206-216,239-249,296-306
3oae C:68-78,95-110,153-161,327-336,446-452
3oae E:68-78,95-110,153-161,327-336,446-452
3oae B:68-78,95-110,153-161,327-336,446-452
3oae D:68-78,95-110,153-161,327-336,446-452
3oae A:68-78,95-110,153-161,327-336,446-452
2r5i O:68-78,95-110,153-161,327-336,447-453
2r5i K:68-78,95-110,153-161,327-336,447-453
2r5i A:68-78,95-110,153-161,327-336,447-453
2r5i G:68-78,95-110,153-161,327-336,447-453
2r5i H:68-78,95-110,153-161,327-336,447-453
2r5i D:68-78,95-110,153-161,327-336,447-453
2r5i B:68-78,95-110,153-161,327-336,447-453
2r5i F:68-78,95-110,153-161,327-336,447-453
2r5i I:68-78,95-110,153-161,327-336,447-453
2r5i C:68-78,95-110,153-161,327-336,447-453
2r5i L:68-78,95-110,153-161,327-336,447-453
2r5i J:68-78,95-110,153-161,327-336,447-453
2r5i E:68-78,95-110,153-161,327-336,447-453
2r5i N:68-78,95-110,153-161,327-336,447-453
2r5i M:68-78,95-110,153-161,327-336,447-453
2r5k C:65-75,92-107,150-158,324-333,442-448
2r5k B:65-75,92-107,149-158,324-333,442-448
2r5k E:65-75,92-107,150-158,324-333,442-448
2r5k D:65-75,92-107,150-158,324-333,442-448
2r5k A:65-75,92-107,150-158,324-333,442-448
3a57 A:12-23,32-41,45-49,54-64,144-154
3nvw L:602-612,614-622,630-636,661-673,821-827
3nvv L:602-612,614-622,630-636,661-673,821-827
3nvv C:602-610,613-622,630-636,665-673,821-827
3qdu C:1-11,17-26,29-38,39-47,133-142
3qdu D:1-11,17-26,29-38,39-47,133-142
3qdu A:1-11,17-26,29-38,39-47,133-142
3qdu B:1-11,17-26,29-38,39-47,133-142
3qds A:1-11,17-26,29-38,39-47,133-142
3qds B:1-11,17-26,29-38,39-47,133-142
2r5h C:68-78,95-111,153-161,327-336,446-452
2r5h G:68-78,95-111,152-161,327-336,446-452
2r5h L:68-78,97-111,152-161,327-336,446-452
2r5h A:68-78,97-111,153-161,327-336,446-452
2r5h D:70-78,95-111,152-161,327-336,446-452
2r5h J:68-78,97-111,153-161,327-336,446-452
2r5h I:68-78,97-110,152-161,327-336,446-452
2r5h N:68-78,95-110,152-161,327-336,446-452
2r5h E:70-78,97-110,152-161,327-336,446-452
2r5h H:68-78,97-111,152-161,327-336,446-452
2r5h M:68-78,95-110,153-161,327-336,446-452
2r5h O:68-78,97-111,153-161,327-336,446-452
2r5h F:68-78,95-111,153-161,327-336,446-452
2r5h B:68-78,97-110,153-161,327-336,446-452
2r5h K:68-78,97-110,152-161,327-336,446-452
2b5l A:3-9,358-366,1024-1033,1034-1043,1087-1091
3mlk A:199-209,217-230,233-244,313-325,330-335
3mlj A:199-209,217-230,233-244,313-325,330-335
3qdv A:1-11,17-26,29-38,39-47,133-142
3qdv B:1-11,17-26,29-38,39-47,133-142
3qdw A:1-11,17-26,29-38,40-47,133-142
3qdw B:1-11,17-26,29-38,39-47,133-142
2ofd A:1-11,17-25,28-37,38-46,132-141
2ofd B:1-11,17-25,28-37,38-46,132-141
3iyj D:66-74,91-106,150-157,324-333,443-449
3iyj B:66-74,91-106,150-157,324-333,443-449
3iyj E:66-74,91-106,150-157,324-333,443-449
3iyj C:66-74,91-106,150-157,324-333,443-449
3iyj A:66-74,91-106,148-157,324-333,443-449
3iyj F:66-74,91-106,150-157,324-333,443-449
3ofl H:68-78,95-110,153-161,327-336,447-453
3ofl I:68-78,95-110,153-161,327-336,447-453
3ofl E:68-78,95-110,153-161,327-336,447-453
3ofl A:68-78,95-110,153-161,327-336,447-453
3ofl L:68-78,95-110,153-161,327-336,447-453
3ofl G:68-78,95-110,153-161,327-336,447-453
3ofl N:68-78,95-110,153-161,327-336,447-453
3ofl O:68-78,95-110,153-161,327-336,447-453
3ofl B:68-78,95-110,153-161,327-336,447-453
3ofl K:68-78,95-110,153-161,327-336,447-453
3ofl M:68-78,95-110,153-161,327-336,447-453
3ofl F:68-78,95-110,153-161,327-336,447-453
3ofl D:68-78,95-110,153-161,327-336,447-453
3ofl J:68-78,95-110,153-161,327-336,447-453
3ofl C:68-78,95-110,153-161,327-336,447-453
2z0b D:6-17,23-32,46-50,54-66,109-118
2ckj D:603-611,614-623,631-637,666-674,822-828
2ckj B:603-611,614-623,631-637,666-674,822-828
2ckj A:603-611,614-623,631-637,666-674,822-828
2ckj C:603-611,614-623,631-637,666-674,822-828
3i89 A:3-9,358-366,1024-1033,1034-1043,1087-1091
2e3t A:602-612,614-622,630-636,661-673,821-827
2e3t B:602-612,614-622,630-636,661-673,821-827
3mid A:199-209,217-230,233-244,313-325,330-335
2ofc B:1-11,17-25,28-37,38-46,132-141
2ofc A:1-11,17-25,28-37,38-46,132-141
1zxi E:48-59,61-69,77-83,112-124,293-299
3b9j K:602-612,614-622,630-636,661-673,821-827