1. c.36.1 Thiamin diphosphate-binding fold (THDP-binding) there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules ! two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules !
Thiamin diphosphate-binding fold (THDP-binding) 3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465
1pyd d1pyda2 A:5-18,93-101,141-160,160-168,177-184
1pvd d1pvda2 A:5-18,94-103,141-160,161-169,177-184
1pvd d1pvdb2 B:5-18,94-102,141-160,161-169,177-184
1qpb d1qpba2 A:5-18,93-103,141-160,160-170,177-184
1pyd d1pydb2 B:5-18,94-103,141-160,161-170,177-184
2fn3 d2fn3a2 A:3-16,89-99,131-148,151-160,168-177
2v3w d2v3wb2 B:3-16,89-100,131-148,151-160,168-177
1q6z d1q6za2 A:3-16,89-100,131-148,151-160,168-177
1po7 d1po7a2 A:3-16,89-100,131-148,151-160,168-177
1bfd d1bfda2 A:3-16,89-100,131-148,151-160,168-177
2v3w d2v3wd2 D:3-16,89-100,131-148,151-160,168-177
1mcz d1mczj2 J:3-16,89-100,131-148,151-160,168-177
1mcz d1mcza2 A:3-16,89-100,131-148,151-160,168-177
1mcz d1mczk2 K:3-16,89-98,131-148,151-159,168-177
1mcz d1mczh2 H:3-16,89-100,131-148,151-160,168-177
1mcz d1mczl2 L:3-16,89-100,131-148,151-160,168-177
1mcz d1mczo2 O:3-16,89-98,131-148,151-159,168-177
1mcz d1mczb2 B:3-16,89-98,131-148,151-159,168-177
1mcz d1mczm2 M:3-16,89-100,131-148,151-160,168-177
1mcz d1mczn2 N:3-16,89-100,131-148,151-160,168-177
1mcz d1mcze2 E:3-16,89-100,131-148,151-160,168-177
1mcz d1mczg2 G:3-16,89-98,131-148,151-159,168-177
1mcz d1mczf2 F:3-16,89-100,131-148,151-160,168-177
1mcz d1mczi2 I:3-16,89-98,131-148,151-159,168-177
1mcz d1mczc2 C:3-16,89-98,131-148,151-159,168-177
1mcz d1mczd2 D:3-16,89-100,131-148,151-160,168-177
1mcz d1mczp2 P:3-16,89-100,131-148,151-160,168-177
2v3w d2v3wc2 C:3-16,89-100,131-149,151-160,168-177
2v3w d2v3wa2 A:3-16,89-100,131-149,151-160,168-177
2uza d2uzab1 B:9-22,106-114,145-164,165-173,187-195
2c42 d2c42b1 B:9-22,106-114,145-164,165-173,187-195
2c3p d2c3pb1 B:9-22,106-114,145-164,165-173,187-195
1kek d1kekb1 B:9-22,106-114,145-164,165-173,187-195
2c3u d2c3ua1 A:9-22,106-114,145-164,165-173,187-195
2c3y d2c3yb1 B:9-22,106-114,145-164,165-173,187-195
2c3m d2c3mb1 B:9-22,106-114,145-164,165-173,187-195
2c3u d2c3ub1 B:9-22,106-114,145-164,165-173,187-195
1b0p d1b0pb1 B:9-22,106-114,145-164,165-173,187-195
1kek d1keka1 A:9-22,106-114,145-164,165-173,187-195
2c42 d2c42a1 A:9-22,106-114,145-164,165-173,187-195
2c3o d2c3ob1 B:9-22,106-114,145-164,165-173,187-195
2c3m d2c3ma1 A:9-22,106-114,145-164,165-173,187-195
1yno d1ynoa2 A:3-16,91-100,131-148,151-160,168-177
2fwn d2fwna2 A:3-16,91-100,131-148,151-160,168-177
1pi3 d1pi3a2 A:3-16,91-100,131-148,151-160,168-177
1qpb d1qpbb2 B:5-18,93-102,144-160,160-169,177-184
2ji9 d2ji9a2 A:11-24,98-108,141-158,161-170,178-187
2jib d2jibb2 B:11-24,98-108,141-158,161-170,178-187
2ji6 d2ji6a2 A:11-24,98-108,141-158,161-170,178-187
2ji9 d2ji9b2 B:11-24,98-108,141-158,161-170,178-187
2ji8 d2ji8a2 A:11-24,98-108,141-158,161-170,178-187
2ji6 d2ji6b2 B:11-24,98-108,141-158,161-170,178-187
2jib d2jiba2 A:11-24,98-108,141-158,161-170,178-187
2ji8 d2ji8b2 B:11-24,98-108,141-158,161-170,178-187
2ji7 d2ji7a2 A:11-24,98-108,141-158,161-170,178-187
2c31 d2c31a2 A:11-24,98-108,141-158,161-170,178-187
2ji7 d2ji7b2 B:11-24,98-108,141-158,161-170,178-187
2c31 d2c31b2 B:11-24,98-108,141-158,161-170,178-187
2. c.124.1 NagB/RpiA/CoA transferase-like
NagB/RpiA/CoA transferase-like core: 3 layers: a/b/a; parallel or mixed beta-sheet of 6 strands, order 321456
3efb d3efbb1 B:11-24,26-31,234-248,251-256,256-265
3efb d3efbd1 D:10-24,26-31,234-248,251-256,256-265
3efb d3efbc1 C:12-24,26-31,234-248,251-256,256-264
2r5f d2r5fa1 A:62-74,76-81,286-300,303-308,309-316
2gnp d2gnpa1 A:56-73,75-80,282-296,299-304,304-317
2okg d2okgb1 B:93-106,108-116,307-321,324-331,330-338
3bxh d3bxhb1 B:93-106,108-116,307-321,324-331,330-338
3bxe d3bxeb1 B:93-106,108-116,307-321,324-331,330-338
3bxg d3bxgb1 B:93-106,108-116,307-321,324-331,330-338
3bxf d3bxfb1 B:94-106,108-116,307-321,324-331,330-338
3bxh d3bxha1 A:95-106,108-116,307-321,324-331,330-338
3bxg d3bxga1 A:95-106,108-116,307-321,324-331,330-338
3bxf d3bxfa1 A:93-106,108-116,307-321,324-331,330-338
2o0m d2o0ma1 A:95-106,108-113,312-323,325-332,333-341
3efb d3efba1 A:12-24,26-31,239-248,251-256,256-265
3. c.121.1 Ribose/Galactose isomerase RpiB/AlsB
Ribose/Galactose isomerase RpiB/AlsB 3 layers: a/b/a, core: parallel beta-sheet of 5 strands, order 21354; topological similarity to a part of the arginase/deacetylase fold
2vvo d2vvod1 D:11-29,63-70,92-104,106-112,116-130
2bet d2bete_ E:11-29,63-70,92-104,106-112,116-130
1o1x d1o1xa_ A:8-26,59-66,88-100,102-108,112-126
2vvq d2vvqe1 E:11-29,63-70,92-104,106-112,116-130
2vvo d2vvob1 B:11-29,63-70,92-104,106-112,116-130
1usl d1usle_ E:11-29,63-70,92-104,106-112,116-130
2vvo d2vvoc1 C:11-29,63-70,92-104,106-112,116-130
2vvp d2vvpc1 C:11-29,63-70,92-104,106-112,116-130
2bes d2besb_ B:11-29,63-70,92-104,106-112,116-130
2vvp d2vvpe1 E:11-29,63-70,92-104,106-112,116-130
2bes d2besd_ D:11-29,63-70,92-104,106-112,116-130
1usl d1uslc_ C:11-29,63-70,92-104,106-112,116-130
2bet d2beta_ A:11-29,63-70,92-104,106-112,116-130
2vvq d2vvqa1 A:11-29,63-70,92-104,106-112,116-130
2vvo d2vvoa1 A:11-29,63-70,92-104,106-112,116-130
2bet d2betb_ B:11-29,63-70,92-104,106-112,116-130
2vvp d2vvpd1 D:11-29,63-70,92-104,106-112,116-130
1usl d1uslb_ B:11-29,63-70,92-104,106-112,116-130
2vvp d2vvpb1 B:11-29,63-70,92-104,106-112,116-130
2vvq d2vvqb1 B:11-29,63-70,92-104,106-112,116-130
2bet d2betd_ D:11-29,63-70,92-104,106-112,116-130
1usl d1usld_ D:11-29,63-70,92-104,106-112,116-130
2vvq d2vvqd1 D:11-29,63-70,92-104,106-112,116-130
1usl d1usla_ A:11-29,63-70,92-104,106-112,116-130
2vvo d2vvoe1 E:11-29,63-70,92-104,106-112,116-130
2vvp d2vvpa1 A:11-29,63-70,92-104,106-112,116-130
1nn4 d1nn4b_ B:15-27,60-67,89-101,103-109,113-127
1nn4 d1nn4c_ C:15-27,60-67,89-101,103-109,113-127
1nn4 d1nn4d_ D:15-27,60-67,89-101,103-109,113-127
1nn4 d1nn4a_ A:15-27,60-67,89-101,103-109,113-127
2bet d2betc_ C:11-29,63-70,92-104,106-112,116-131
2bes d2bese_ E:11-29,63-70,92-104,106-112,116-131
2bes d2besc_ C:11-29,63-70,92-104,106-112,116-131
2bes d2besa_ A:11-29,63-70,92-104,106-112,116-131
2vvq d2vvqc1 C:11-29,63-70,92-104,106-112,116-131
4. c.2.1 NAD(P)-binding Rossmann-fold domains
NAD(P)-binding Rossmann-fold domains core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456 ! The nucleotide-binding modes of this and the next two folds/superfamilies are similar
2b4r d2b4rq1 Q:12-25,117-123,133-142,146-151,318-336
1ywg d1ywgq1 Q:12-25,117-123,133-141,146-152,318-337
1ywg d1ywgr1 R:12-25,117-123,133-141,146-152,318-337
1ywg d1ywgo1 O:12-25,117-123,133-141,146-152,318-337
1ywg d1ywgp1 P:12-25,117-123,133-141,146-152,318-337
5. c.146.1 YgbK-like
YgbK-like consists of two domains with partial topological similarity to the P-loop kinases but without the P-loop motif; the domain association results in the formation of a single mixed beta-sheet of 15 strands
1yzy d1yzya1 A:7-22,75-80,199-211,214-219,219-232
1yzy d1yzyb1 B:7-22,75-80,199-211,214-219,219-232
6. c.1.12 Phosphoenolpyruvate/pyruvate domain
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
1vbg d1vbga1 A:521-536,537-544,842-853,855-860,860-876
1vbh d1vbha1 A:522-536,537-544,842-853,855-860,860-876
1kbl d1kbla1 A:518-532,534-540,837-848,850-855,855-873
2dik d2dika1 A:518-532,534-539,837-848,850-855,855-874
1kc7 d1kc7a1 A:518-532,534-541,837-848,850-855,855-873
1dik d1dika1 A:518-532,534-541,837-848,850-855,855-874
2r82 d2r82a1 A:518-532,534-541,837-848,850-855,855-873
1ggo d1ggoa1 A:518-532,534-541,837-848,850-855,855-874
1jde d1jdea1 A:518-532,534-541,837-848,850-855,855-874
7. c.1.8 (Trans)glycosidases
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
1it0 d1it0a2 A:4-13,14-21,243-258,259-266,290-303
1ta3 d1ta3b_ B:2-11,13-19,243-258,259-266,290-301
1it0 d1it0b2 B:504-513,514-521,743-758,759-766,790-802
1isx d1isxb2 B:504-513,514-521,743-758,759-766,790-802
1v6x d1v6xb2 B:504-513,514-521,743-758,759-766,790-802
1isz d1isza2 A:4-13,14-21,243-258,259-266,290-302
1v6v d1v6vb2 B:504-513,514-521,743-758,759-766,790-802
1isz d1iszb2 B:504-513,514-521,743-758,759-766,790-802
1v6u d1v6ua2 A:4-13,14-21,243-258,259-266,290-302
1isx d1isxa2 A:4-13,14-21,243-258,259-266,290-302
1v6w d1v6wb2 B:504-513,514-521,743-758,759-766,790-802
1xyf d1xyfb2 B:504-513,514-521,743-758,759-766,790-802
1isv d1isvb2 B:504-513,514-521,743-758,759-766,790-802
1isw d1iswb2 B:504-513,514-521,743-758,759-766,790-802
1isy d1isyb2 B:504-513,514-521,743-758,759-766,790-802
1xyf d1xyfa2 A:4-13,14-21,243-258,259-266,290-303
1isw d1iswa2 A:4-13,14-21,243-258,259-266,290-302
1v6u d1v6ub2 B:504-513,514-521,743-758,759-766,790-802
1isv d1isva2 A:4-13,14-21,243-258,259-266,290-302
1isy d1isya2 A:4-13,14-21,243-258,259-266,290-302
1e0x d1e0xb_ B:4-13,14-21,243-258,259-266,290-302
1v6w d1v6wa2 A:4-13,14-21,243-258,259-266,290-302
1v6x d1v6xa2 A:4-13,14-21,243-258,259-266,290-302
1v6v d1v6va2 A:4-13,14-21,243-258,259-266,290-302
1xyz d1xyzb_ B:517-526,527-533,764-787,790-795,824-835
1xyz d1xyza_ A:517-526,527-533,764-787,790-795,824-835
1e0x d1e0xa_ A:4-13,14-21,243-258,259-266,290-302
1vbu d1vbua1 A:518-527,528-535,763-786,787-794,823-840
1vbr d1vbrb1 B:518-527,528-535,763-786,787-794,823-840
1vbu d1vbub1 B:518-527,528-535,763-786,787-794,823-840
1vbr d1vbra1 A:518-527,528-535,763-786,787-794,823-840
1nq6 d1nq6a_ A:2-12,13-20,241-260,261-268,292-302
8. c.42.1 Arginase/deacetylase
Arginase/deacetylase 3 layers: a/b/a, parallel beta-sheet of 8 strands, order 21387456
1cev d1ceva_ A:31-40,90-98,247-262,265-271,280-295
1cev d1cevb_ B:31-40,90-97,247-262,265-271,280-295
1cev d1ceve_ E:31-40,90-98,247-262,265-271,280-295
1cev d1cevf_ F:31-40,90-98,247-262,265-271,280-295
1cev d1cevc_ C:31-40,90-98,247-262,265-271,280-295
1cev d1cevd_ D:31-40,90-98,247-262,265-271,280-295
2cev d2ceva_ A:31-40,90-98,247-262,265-271,280-295
2cev d2cevb_ B:31-40,90-97,247-262,265-271,280-295
5cev d5ceva_ A:31-40,90-98,247-262,265-271,280-295
5cev d5cevc_ C:31-40,90-98,247-262,265-271,280-295
2cev d2ceve_ E:31-40,90-97,247-262,265-271,280-295
2cev d2cevc_ C:31-40,90-97,247-262,265-271,280-295
5cev d5ceve_ E:31-40,90-98,247-262,265-271,280-295
5cev d5cevf_ F:31-40,90-98,247-262,265-271,280-295
2cev d2cevf_ F:31-40,90-97,247-262,265-271,280-295
2cev d2cevd_ D:31-40,90-97,247-262,265-271,280-295
5cev d5cevb_ B:31-40,90-98,247-262,265-271,280-295
5cev d5cevd_ D:31-40,90-98,247-262,265-271,280-295
3cev d3cevf_ F:31-40,90-97,247-262,265-271,280-295
3cev d3cevc_ C:31-40,90-97,247-262,265-271,280-295
3cev d3ceva_ A:31-40,90-97,247-262,265-271,280-295
4cev d4ceva_ A:31-40,90-97,247-262,265-271,280-295
3cev d3cevb_ B:31-40,90-97,247-262,265-271,280-295
3cev d3cevd_ D:31-40,90-98,247-262,265-271,280-295
3cev d3ceve_ E:31-40,90-97,247-262,265-271,280-295
4cev d4ceve_ E:31-40,90-97,247-262,265-271,280-295
4cev d4cevd_ D:31-40,90-97,247-262,265-271,280-295
4cev d4cevf_ F:31-40,90-97,247-262,265-271,280-295
4cev d4cevc_ C:31-40,90-97,247-262,265-271,280-295
4cev d4cevb_ B:31-40,90-97,247-262,265-271,280-295
1hqf d1hqfb_ B:35-44,92-100,253-268,271-277,285-305
1hqf d1hqfa_ A:35-44,92-100,253-268,271-277,285-305
1hqf d1hqfc_ C:35-44,92-100,253-268,271-277,285-305
4rla d4rlaa_ A:35-44,92-100,253-268,271-277,285-305
1c3r d1c3ra_ A:26-39,121-126,271-287,289-293,298-315
1hqx d1hqxc_ C:35-44,92-99,253-268,271-277,285-305
1hqx d1hqxb_ B:35-44,92-99,253-268,271-277,285-305
1hqh d1hqhb_ B:35-44,92-100,253-268,271-277,285-305
1hqx d1hqxa_ A:35-44,92-99,253-268,271-277,285-305
1c3r d1c3rb_ B:26-39,121-126,271-287,289-293,298-315
1hqh d1hqha_ A:35-44,92-100,253-268,269-277,285-305
1hqh d1hqhc_ C:35-44,92-100,253-268,269-277,285-305
1t4s d1t4sa_ A:35-44,92-100,253-268,271-277,285-305
1t4s d1t4sb_ B:35-44,92-100,253-268,271-277,285-305
4rla d4rlab_ B:35-44,92-100,253-268,271-277,285-305
1t4s d1t4sc_ C:35-44,92-100,253-268,271-277,285-305
1p8r d1p8ra_ A:35-44,92-99,253-268,271-277,285-305
1p8r d1p8rb_ B:35-44,92-99,253-268,271-277,285-305
1zpe d1zpea1 A:35-44,92-100,253-268,271-277,285-305
2pha d2phab1 B:35-44,92-100,253-268,271-277,285-305
4rla d4rlac_ C:35-44,92-100,253-268,271-277,285-305
1t5g d1t5gc_ C:35-44,92-100,253-268,271-277,285-305
2rla d2rlac_ C:35-44,92-99,253-268,271-277,285-305
2rla d2rlaa_ A:35-44,92-99,253-268,271-277,285-305
1p8s d1p8sb_ B:35-44,92-100,253-268,271-277,285-305
1t5g d1t5ga_ A:35-44,92-100,253-268,271-277,285-305
2rla d2rlab_ B:35-44,92-99,253-268,271-277,285-305
1t5g d1t5gb_ B:35-44,92-100,253-268,271-277,285-305
1zpg d1zpga1 A:35-44,92-100,253-268,271-277,285-305
1p8n d1p8nc_ C:35-44,92-100,253-268,271-277,285-305
1tbl d1tbla1 A:35-44,92-100,253-268,271-277,285-305
1p8q d1p8qa_ A:35-44,92-100,253-268,269-277,285-305
1tbl d1tblb1 B:35-44,92-100,253-268,271-277,285-305
1tbl d1tblc1 C:35-44,92-100,253-268,271-277,285-305
1p8o d1p8oc_ C:35-44,92-100,253-268,271-277,285-305
1p8q d1p8qc_ C:35-44,92-100,253-268,271-277,285-305
1p8n d1p8nb_ B:35-44,92-100,253-268,271-277,285-305
1p8q d1p8qb_ B:35-44,92-100,253-268,271-277,285-305
1tbj d1tbja1 A:35-44,92-100,253-268,271-277,285-305
1p8n d1p8na_ A:35-44,92-100,253-268,271-277,285-305
1p8s d1p8sc_ C:35-44,92-100,253-268,271-277,285-305
1tbj d1tbjc1 C:35-44,92-100,253-268,271-277,285-305
1tbj d1tbjb1 B:35-44,92-100,253-268,271-277,285-305
1p8o d1p8oa_ A:35-44,92-100,253-268,271-277,285-305
1r1o d1r1oa_ A:35-44,92-100,253-268,271-277,285-305
3rla d3rlaa_ A:35-44,92-100,253-268,271-277,285-305
1p8o d1p8ob_ B:35-44,92-100,253-268,271-277,285-305
1r1o d1r1ob_ B:35-44,92-100,253-268,269-277,285-305
5rla d5rlab_ B:35-44,92-100,253-268,271-277,285-305
5rla d5rlac_ C:35-44,92-99,253-268,271-277,285-305
1r1o d1r1oc_ C:35-44,92-100,253-268,271-277,285-305
1zpe d1zpeb1 B:35-44,92-100,253-268,271-277,285-305
1ta1 d1ta1c1 C:35-44,92-100,253-268,271-277,285-305
1ta1 d1ta1a1 A:35-44,92-100,253-268,271-277,285-305
1ta1 d1ta1b1 B:35-44,92-100,253-268,271-277,285-305
2zav d2zava1 A:35-44,92-100,253-268,271-277,285-305
1hqg d1hqgc_ C:35-44,92-100,253-268,271-277,285-305
1hqg d1hqgb_ B:35-44,92-100,253-268,271-277,285-305
1hqg d1hqga_ A:35-44,92-100,253-268,271-277,285-305
3rla d3rlab_ B:35-44,92-100,253-268,271-277,285-305
1zpe d1zpec1 C:35-44,92-100,253-268,271-277,285-305
5rla d5rlaa_ A:35-44,92-99,253-268,271-277,285-305
2zav d2zavb1 B:35-44,92-100,253-268,271-277,285-305
1zpg d1zpgb1 B:35-44,92-100,253-268,271-277,285-305
1wva d1wvab1 B:35-44,92-100,253-268,271-277,285-305
1t5f d1t5fc1 C:35-44,92-100,253-268,271-277,285-305
1hq5 d1hq5b_ B:35-44,92-100,253-268,271-277,285-305
1hq5 d1hq5a_ A:35-44,92-100,253-268,271-277,285-305
1t4p d1t4pa1 A:35-44,92-99,253-268,271-277,285-305
1rla d1rlac_ C:35-44,92-100,253-268,271-277,285-305
1zpg d1zpgc1 C:35-44,92-100,253-268,271-277,285-305
1p8s d1p8sa_ A:35-44,92-100,253-268,271-277,285-305
1t5f d1t5fa1 A:35-44,92-100,253-268,271-277,285-305
1t4r d1t4ra1 A:35-44,92-100,253-268,271-277,285-305
1t5f d1t5fb1 B:35-44,92-100,253-268,271-277,285-305
3rla d3rlac_ C:35-44,92-100,253-268,271-277,285-305
1rla d1rlaa_ A:35-44,92-99,253-268,271-277,285-305
1t4r d1t4rb1 B:35-44,92-100,253-268,271-277,285-305
2pha d2phaa1 A:35-44,92-100,253-268,271-277,285-305
3dj8 d3dj8a1 A:35-44,92-100,253-268,271-277,285-305
2pll d2plla1 A:35-44,92-100,253-268,271-277,285-305
3dj8 d3dj8b1 B:35-44,92-100,253-268,271-277,285-305
1t4r d1t4rc1 C:35-44,92-100,253-268,271-277,285-305
1p8m d1p8mc_ C:35-44,92-100,253-268,271-277,285-305
1p8m d1p8mb_ B:35-44,92-100,253-268,271-277,285-305
1t4t d1t4tc1 C:35-44,92-100,253-268,271-277,285-305
1p8p d1p8pa_ A:35-44,92-100,253-268,271-277,285-305
1t4t d1t4ta1 A:35-44,92-100,253-268,271-277,285-305
1p8p d1p8pb_ B:35-44,92-100,253-268,271-277,285-305
2pho d2phob1 B:35-44,92-100,253-268,271-277,285-305
1tbh d1tbha1 A:35-44,92-100,253-268,271-277,285-305
1t4p d1t4pb1 B:35-44,92-100,253-268,271-277,285-305
1t4p d1t4pc1 C:35-44,92-100,253-268,271-277,285-305
2pho d2phoa1 A:35-44,92-100,253-268,271-277,285-305
1tbh d1tbhc1 C:35-44,92-100,253-268,271-277,285-305
1p8m d1p8ma_ A:35-44,92-100,253-268,271-277,285-305
1tbh d1tbhb1 B:35-44,92-100,253-268,271-277,285-305
2pll d2pllb1 B:35-44,92-100,253-268,271-277,285-305
1p8p d1p8pc_ C:35-44,92-100,253-268,271-277,285-305
1t4t d1t4tb1 B:35-44,92-100,253-268,271-277,285-305
1wva d1wvaa1 A:35-44,92-100,253-268,271-277,285-305
2aeb d2aeba1 A:35-44,92-100,253-268,271-277,285-305
1rla d1rlab_ B:35-44,92-100,253-268,271-277,285-305
1wvb d1wvbb1 B:35-44,92-100,253-268,271-277,285-305
1pq3 d1pq3e_ E:53-62,111-119,272-287,290-296,304-324
1pq3 d1pq3b_ B:53-62,111-119,272-287,290-296,304-324
1pq3 d1pq3d_ D:53-62,111-119,272-287,290-296,304-324
1pq3 d1pq3a_ A:53-62,111-119,272-287,290-296,304-324
1pq3 d1pq3c_ C:53-62,111-119,272-287,290-296,304-324
1pq3 d1pq3f_ F:53-62,111-119,272-287,290-296,304-324
1d3v d1d3va_ A:35-44,92-100,253-268,271-277,285-305
1wvb d1wvba1 A:35-44,92-100,253-268,271-277,285-305
1d3v d1d3vb_ B:35-44,92-100,253-268,271-277,285-305
2aeb d2aebb1 B:35-44,92-100,253-268,271-276,285-305
3c0y d3c0yc1 C:544-559,658-663,816-832,834-840,844-861
9. c.1.2 Ribulose-phoshate binding barrel
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
1pii d1piia1 A:244-255,256-261,409-420,422-427,438-452
10. c.3.1 FAD/NAD(P)-binding domain
FAD/NAD(P)-binding domain core: 3 layers, b/b/a; central parallel beta-sheet of 5 strands, order 32145; top antiparallel beta-sheet of 3 strands, meander
1rp0 d1rp0a1 A:48-62,181-186,217-230,235-239,255-275
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 1047 (enumeration index: query936) of S5
3e6k A:35-44,92-100,253-268,271-277,285-305
3e6k B:35-44,92-99,253-268,271-277,285-305
3nze A:60-73,74-79,287-298,301-306,307-315
3nze B:60-73,74-79,284-298,301-306,307-316
3nyd B:5-14,16-22,244-259,260-267,291-302
3nyd A:5-14,16-22,244-259,260-267,291-303
3f80 B:35-44,92-100,253-268,271-277,285-305
3f80 A:35-44,92-100,253-268,271-277,285-305
2wys A:194-203,203-210,471-494,495-503,529-540
3o2l A:5-14,16-22,244-259,260-267,291-305
2z0j G:25-38,40-46,78-85,90-96,205-214
2z0j H:25-38,40-46,78-85,89-96,205-214
2z0j A:25-38,40-45,78-85,89-96,205-214
2z0j B:25-38,40-45,78-85,89-96,205-214
2z0j E:25-38,40-46,78-85,90-96,205-214
2z0j C:25-38,40-45,78-85,89-96,205-214
2z0j D:25-38,40-45,78-85,88-96,205-214
2z0j F:25-38,40-46,78-85,89-96,205-214
3m1p A:16-28,63-70,92-104,106-112,116-131
3m1p B:16-28,63-70,92-104,106-112,116-131
3sjt B:35-44,92-100,253-268,271-277,285-305
3sjt A:35-44,92-100,253-268,271-277,285-305
3e8q A:35-44,92-99,253-268,269-277,285-305
3e8q B:35-44,92-99,253-268,271-277,285-305
3e8q C:35-44,92-99,253-268,271-277,285-305
3skk B:35-44,92-100,253-268,271-277,285-305
3skk A:35-44,92-100,253-268,271-277,285-305
3e9b C:35-44,92-100,253-268,271-277,285-305
3e9b B:35-44,92-100,253-268,271-277,285-305
3e9b A:35-44,92-100,253-268,271-277,285-305
3sl1 A:51-60,184-192,344-359,360-368,392-407
3e6a O:12-25,119-125,134-142,147-153,317-336
3nj3 A:21-30,31-38,266-289,290-297,326-341
3nj3 B:21-30,31-38,266-289,290-297,326-341
3kv1 A:6-18,20-25,230-241,244-249,250-262
2i3g A:19-32,104-109,140-150,151-155,319-338
2i3g B:19-32,104-109,140-150,151-155,319-338
3the A:35-44,92-100,253-268,271-277,285-305
3the B:35-44,92-100,253-268,271-277,285-305
3max C:36-51,135-140,282-297,299-306,309-326
3max B:36-51,135-140,282-297,299-305,309-326
3max A:36-51,135-140,282-297,299-306,309-326
3niy A:21-30,31-38,266-289,290-297,326-341
3niy B:21-30,31-38,266-289,290-297,326-341
3hee A:11-26,59-66,88-100,102-108,112-126
3hee B:11-26,59-66,88-100,102-108,112-126
2ef5 F:31-40,88-96,239-254,255-263,272-287
2ef5 G:31-40,88-96,239-254,255-263,272-287
2ef5 D:31-40,88-96,239-254,255-263,272-287
2ef5 E:31-40,88-96,239-254,255-263,272-287
2ef5 A:31-40,88-96,239-254,255-263,272-287
2ef5 B:31-40,88-96,239-254,255-263,272-287
3lp4 A:35-44,92-100,253-268,271-277,285-305
3lp4 B:35-44,92-100,253-268,271-277,285-305
2x0s A:543-557,559-565,861-872,874-879,879-903
2d22 B:504-513,514-521,743-758,759-766,790-802
2d22 A:4-13,14-21,243-258,259-266,290-302
3sdw A:19-33,70-77,99-111,113-119,123-138
2ef4 A:31-40,88-95,239-254,255-263,272-287
2yr6 B:65-82,404-410,621-641,646-651,660-681
2yr6 A:65-82,404-410,621-641,646-651,660-681
3hsk A:13-26,101-108,125-143,147-153,347-363
2g4f B:4-13,14-21,243-258,259-266,290-302
2g4f A:4-13,14-21,243-258,259-266,290-302
2vk4 B:5-18,94-101,141-160,161-168,177-184
2vk4 A:5-18,94-101,141-160,161-168,177-184
2vk4 D:5-18,94-102,141-160,161-169,177-184
2vk4 C:5-18,94-101,141-160,161-168,177-184
3c5y C:11-25,66-73,95-107,109-115,122-137
3c5y P:11-25,66-73,95-107,109-115,122-137
3c5y J:11-25,66-73,95-107,109-115,122-137
3c5y M:11-25,66-73,95-107,109-115,122-137
3c5y D:11-25,66-73,95-107,109-115,122-137
3c5y O:11-26,66-73,95-107,109-115,122-137
3c5y E:11-25,66-73,95-107,109-115,122-137
3c5y L:11-25,66-73,95-107,109-115,122-137
3c5y K:11-25,66-73,95-107,109-115,122-137
3c5y I:11-25,66-73,95-107,109-115,122-137
3c5y H:11-25,66-73,95-107,109-115,122-137
3c5y N:11-25,66-73,95-107,109-115,122-137
3c5y F:11-25,66-73,95-107,109-115,122-137
3c5y G:11-25,66-73,95-107,109-115,122-137
3c5y B:11-25,66-73,95-107,109-115,122-137
3c5y A:11-25,66-73,95-107,109-115,122-137
3e8z A:35-44,92-100,253-268,271-277,285-305
3e8z C:35-44,92-100,253-268,271-277,285-305
3e8z B:35-44,92-100,253-268,271-277,285-305
3ayl B:65-82,404-410,621-641,646-651,660-681
3ayl A:65-82,404-410,621-641,646-651,660-681
3ph4 A:11-26,59-66,88-100,102-108,112-126
3ph4 B:11-26,59-66,88-100,102-108,112-126
3ph3 A:11-26,59-66,88-100,102-108,112-126
3ph3 B:11-26,59-66,88-100,102-108,112-126
3qmz A:2278-2302,2410-2416,2502-2511,2526-2534,2544-2553
3qmz B:2278-2302,2410-2416,2502-2511,2526-2534,2544-2553
3mfv A:35-44,92-100,253-268,271-277,285-305
3mfv B:35-44,92-100,253-268,271-277,285-305
3th7 B:35-44,92-99,253-268,271-277,285-305
3th7 A:35-44,92-100,253-268,271-277,285-305
2ppw B:11-30,66-73,95-107,109-115,122-138
2ppw A:11-30,66-73,95-107,109-115,122-138
3k8c A:16-28,63-70,92-104,106-112,116-131
3k8c B:16-28,63-70,92-104,106-112,116-131
3s5p A:11-26,59-66,88-100,102-108,112-127
3s5p B:9-26,59-66,88-100,102-108,112-126
3q9f A:29-44,147-152,297-312,314-323,325-341
3q9f L:29-44,147-152,297-312,314-323,325-341
3q9f C:29-44,147-152,297-312,313-323,325-341
3q9f D:29-44,147-152,297-312,314-323,325-341
3sgw A:19-33,70-77,99-111,113-119,123-138
2nqt A:19-32,104-110,140-150,151-155,319-338
2nqt B:19-32,104-110,140-150,151-155,319-338
2d1z A:4-13,14-21,243-258,259-266,290-302
2d1z B:504-513,514-521,743-758,759-766,790-802
2eiv K:31-40,88-95,239-254,255-263,272-287
2eiv E:31-40,88-95,239-254,255-263,272-287
2eiv C:31-40,88-95,239-254,255-263,272-287
2eiv L:31-40,88-96,239-254,255-263,272-287
2eiv H:31-40,88-95,239-254,255-263,272-287
2eiv G:31-40,88-95,239-254,255-263,272-287
2eiv A:31-40,88-95,239-254,255-263,272-287
2eiv M:31-40,88-96,239-254,255-263,272-287
2eiv I:31-40,88-96,239-254,257-263,272-287
2eiv D:31-40,88-96,239-254,255-263,272-287
2eiv F:31-40,88-96,239-254,255-263,272-287
2eiv J:31-40,88-95,239-254,255-263,272-287
3fzn B:3-16,89-100,131-148,151-160,168-177
3fzn C:3-16,89-100,131-148,151-160,168-177
3fzn A:3-16,89-100,131-148,151-160,168-177
2yr4 B:65-82,404-410,621-641,646-651,660-681
2yr4 A:65-82,404-410,621-641,646-651,660-681
3dqq B:10-25,77-83,202-214,217-222,222-235
3dqq A:10-25,77-83,202-214,217-222,222-237
2q29 A:9-22,96-105,139-156,159-167,176-184
2q29 B:9-22,96-105,139-156,159-167,176-184
3kv2 A:35-44,92-100,253-268,271-277,285-305
3kv2 B:35-44,92-100,253-268,271-277,285-305
3mjl A:35-44,92-100,253-268,271-277,285-305
3mjl B:35-44,92-100,253-268,269-277,285-305
3thh A:35-44,92-100,253-268,271-277,285-305
3thh B:35-44,92-100,253-268,271-277,285-305
2d24 A:4-13,14-21,243-258,259-266,290-302
2d24 B:504-513,514-521,743-758,759-766,790-802
2w48 D:58-74,76-81,284-298,301-306,306-315
2w48 C:60-74,76-80,284-298,301-305,306-315
2w48 A:60-74,76-81,284-298,301-306,306-315
2w48 B:58-74,76-81,284-298,301-306,307-315
3tf3 A:35-44,92-100,253-268,271-277,285-305
3tf3 B:35-44,92-100,253-268,271-277,285-305
3k7p A:16-28,63-70,92-104,106-112,116-131
3k7p B:16-28,63-70,92-104,106-112,116-131
3men A:29-44,145-150,294-309,311-319,321-338
1ys4 B:18-31,107-113,131-146,148-154,332-353
3q9b B:29-44,147-152,297-312,314-323,325-341
3q9b C:29-44,147-152,297-312,314-323,325-341
3mmr A:51-60,184-192,344-359,360-368,392-407
3sl0 A:51-60,184-192,344-359,360-368,392-407
3k2b C:9-20,114-120,129-137,142-148,312-332
3k2b Q:9-20,114-120,129-137,142-148,312-332
3k2b B:9-20,114-120,129-137,142-148,312-332
3k2b G:9-20,114-120,129-137,142-147,312-332
2vvr A:15-27,60-67,89-101,103-109,113-127
2vvr C:15-27,60-67,89-101,103-109,113-127
2vvr F:15-27,60-67,89-101,103-109,113-127
2vvr B:15-27,60-67,89-101,103-109,113-127
2vvr E:15-27,60-67,89-101,103-109,113-127
2vvr D:15-27,60-67,89-101,103-109,113-127
2i3a C:19-32,104-110,140-148,151-155,319-338
2i3a A:19-32,104-110,140-148,151-155,319-338
2i3a B:19-32,104-109,140-150,151-155,319-338
2i3a D:19-32,104-110,140-150,151-155,319-338
2vk8 B:5-18,94-102,141-160,161-169,177-184
2vk8 A:5-18,94-102,141-160,161-169,177-184
2vk8 D:5-18,94-103,141-160,161-169,177-184
2vk8 C:5-18,94-102,141-160,161-169,177-184
2q27 A:9-22,96-105,139-156,159-167,176-184
2q27 B:9-22,96-105,139-156,159-167,176-184
3jsk M:88-103,241-246,277-289,295-299,315-334
3jsk I:88-103,241-246,278-289,295-299,315-334
3jsk D:88-103,241-246,277-289,295-299,315-334
3jsk C:88-103,241-246,278-289,295-299,315-334
3jsk G:88-103,242-246,278-289,295-299,315-334
3jsk N:88-103,241-246,277-289,295-299,315-334
3jsk P:88-103,241-246,277-289,295-299,315-334
3jsk H:88-103,242-246,278-289,295-299,315-334
3jsk L:88-103,241-246,278-289,295-299,315-334
3jsk F:88-103,241-246,278-289,295-299,315-334
3jsk A:88-103,241-246,277-289,295-299,315-334
3jsk K:88-103,241-246,277-289,295-299,315-334
3jsk O:88-103,241-246,278-289,295-299,315-334
3gwq A:52-70,72-77,253-262,269-277,284-295
3f6e X:3-16,89-99,131-148,151-160,168-177
3k7o B:16-28,63-70,92-104,106-113,116-131
3k7o A:16-28,63-70,92-104,106-112,116-131
3e6v B:35-44,92-100,253-268,271-277,285-305
3e6v A:35-44,92-100,253-268,271-277,285-305
3mfw A:35-44,92-100,253-268,271-277,285-305
3mfw B:35-44,92-100,253-268,271-277,285-305
2d20 A:4-13,14-21,243-258,259-266,290-302
2d20 B:504-513,514-521,743-758,759-766,790-802
2d23 A:4-13,14-21,243-258,259-266,290-302
2d23 B:504-513,514-521,743-758,759-766,790-802
3ayj B:65-82,404-410,621-641,646-651,660-681
3ayj A:65-82,404-410,621-641,646-651,660-681
2vjy A:5-18,94-102,141-160,161-169,177-184
2vjy C:5-18,94-102,141-160,161-169,177-184
2vjy D:5-18,94-103,141-160,161-169,177-184
2vjy B:5-18,94-102,141-160,161-169,177-184
3thj B:35-44,92-100,253-268,271-277,285-305
3thj A:35-44,92-100,253-268,271-277,285-305
3ayi B:65-82,404-410,621-641,646-651,660-681
3ayi A:65-82,404-410,621-641,646-651,660-681
2vk1 A:5-18,94-102,141-160,161-169,177-184
2vk1 D:5-18,93-102,141-160,160-169,177-184
2vk1 B:5-18,94-102,141-160,161-169,177-184
2vk1 C:5-18,94-103,141-160,161-169,177-184
3gn0 B:35-44,92-100,253-268,271-277,285-305
3gn0 A:35-44,92-100,253-268,271-277,285-305
3fsj X:3-16,89-99,131-148,151-160,168-177
3k7s A:16-28,63-70,92-104,106-112,116-131
3k7s D:16-28,63-70,92-104,106-112,116-131
3k7s B:16-28,63-70,92-104,106-112,116-131
3k7s C:16-28,63-70,92-104,106-112,116-131
3qd5 B:19-34,70-77,99-111,113-119,123-138
3qd5 A:19-34,70-77,99-111,113-119,123-138
3gmz A:35-44,92-100,253-268,271-277,285-305
3gmz B:35-44,92-100,253-268,271-277,285-305
2yr5 A:65-82,404-410,621-641,646-651,660-681
2yr5 B:65-82,404-410,621-641,646-651,660-681
3he8 A:11-26,59-66,88-100,102-108,112-126
3he8 B:11-26,59-66,88-100,102-108,112-126
2wze A:194-203,203-210,471-493,495-503,529-540
2wze B:194-203,203-210,471-494,495-503,529-540
2d2i P:11-24,117-123,134-142,148-154,317-337
2d2i Q:11-24,117-123,134-142,148-154,317-337
3erp A:6-14,27-32,276-289,292-297,300-314
2q28 B:9-22,96-105,139-156,159-167,176-184
2q28 A:9-22,96-105,139-156,159-167,176-184
3f6b X:3-16,89-100,131-148,151-160,168-177
3ono A:11-30,65-72,94-106,108-114,121-135
2w93 A:5-18,94-103,141-160,161-169,177-184
2w93 B:5-18,94-102,141-160,161-169,177-184
2w93 D:5-18,94-102,141-160,161-169,177-184
2w93 C:5-18,94-102,141-160,161-169,177-184
3lp7 B:35-44,92-100,253-268,271-277,285-305
3lp7 A:35-44,92-100,253-268,271-277,285-305
1rp0 B:48-62,181-186,217-230,235-239,255-275