1. c.87.1 UDP-Glycosyltransferase/glycogen phosphorylase UDP-Glycosyltransferase/glycogen phosphorylase consists of two non-similar domains with 3 layers (a/b/a) each ! domain 1: parallel beta-sheet of 7 strands, order 3214567 ! domain 2: parallel beta-sheet of 6 strands, order 321456 1e4o d1e4oa_ A:452-462,526-535,614-625,626-631,640-650 1e4o d1e4ob_ B:452-462,526-535,614-625,626-631,640-650 3cej d3cejb1 B:487-497,561-570,649-660,661-666,675-685 1l6i d1l6ia_ A:452-462,526-535,614-625,626-631,640-650 1gpa d1gpab_ B:487-497,561-570,649-660,661-666,675-685 2azd d2azdb1 B:452-462,526-535,614-625,626-631,640-650 2av6 d2av6b1 B:452-462,526-535,614-625,626-631,640-650 1l5v d1l5vb_ B:452-462,526-535,614-625,626-631,640-650 2azd d2azda1 A:452-462,526-535,614-625,626-631,640-650 2gpb d2gpba_ A:487-497,561-570,649-660,661-666,675-685 1l5v d1l5va_ A:452-462,526-535,614-625,626-631,640-650 2av6 d2av6a1 A:452-462,526-535,614-625,626-631,640-650 3cej d3ceja1 A:487-497,561-570,649-660,661-666,675-685 1l6i d1l6ib_ B:452-462,526-535,614-625,626-631,640-650 2aw3 d2aw3b1 B:452-462,526-535,614-625,626-631,640-650 1wuy d1wuya1 A:487-497,561-570,649-660,661-666,675-685 3gpb d3gpba_ A:487-497,561-570,649-660,661-666,675-685 6gpb d6gpba_ A:487-497,561-570,649-660,661-666,675-685 2amv d2amva_ A:487-497,561-570,649-660,661-666,675-685 1noj d1noja_ A:487-497,561-570,649-660,661-666,675-685 1gpy d1gpya_ A:487-497,561-570,649-660,661-666,675-685 2aw3 d2aw3a1 A:452-462,526-535,614-625,626-631,640-650 2qll d2qlla1 A:487-497,561-570,649-660,661-666,675-685 1gg8 d1gg8a_ A:487-497,561-570,649-660,661-666,675-685 1pyg d1pygb_ B:487-497,561-570,649-660,661-666,675-685 1fu4 d1fu4a_ A:487-497,561-570,649-660,661-666,675-685 1l5w d1l5wa_ A:452-462,526-535,614-625,626-631,640-650 2ecp d2ecpb_ B:487-497,561-568,649-660,661-666,675-685 1gfz d1gfza_ A:487-497,561-570,649-660,661-666,675-685 1uzu d1uzua_ A:487-497,561-570,649-660,661-666,675-685 1wv1 d1wv1a1 A:487-497,561-570,649-660,661-666,675-685 2prj d2prja_ A:487-497,561-570,649-660,661-666,675-685 1noi d1noid_ D:487-497,561-570,649-660,661-666,675-685 1ftw d1ftwa_ A:487-497,561-570,649-660,661-666,675-685 1gpb d1gpba_ A:487-497,561-570,649-660,661-666,675-685 1ftq d1ftqa_ A:487-497,561-570,649-660,661-666,675-685 1l5w d1l5wb_ B:452-462,526-535,614-625,626-631,640-650 2asv d2asva1 A:452-462,526-535,614-625,626-631,640-650 1wv0 d1wv0a1 A:487-497,561-570,649-660,661-666,675-685 2qn2 d2qn2a1 A:487-497,561-570,649-660,661-666,675-685 2ecp d2ecpa_ A:487-497,561-568,649-660,661-666,675-685 1a8i d1a8ia_ A:487-497,561-570,649-660,661-666,675-685 1nok d1noka_ A:487-497,561-570,649-660,661-666,675-685 4gpb d4gpba_ A:487-497,561-570,649-660,661-666,675-685 1l5q d1l5qa_ A:487-497,561-570,649-660,661-666,675-685 5gpb d5gpba_ A:487-497,561-570,649-660,661-666,675-685 1fa9 d1fa9a_ A:487-497,561-570,649-660,661-666,675-685 1c8k d1c8ka_ A:487-497,561-570,649-660,661-666,675-685 1l5q d1l5qb_ B:487-497,561-570,649-660,661-666,675-685 2pyd d2pyda1 A:487-497,561-570,649-660,661-666,675-685 2gj4 d2gj4a1 A:487-497,561-570,649-660,661-666,675-685 2gm9 d2gm9a1 A:487-497,561-570,649-660,661-666,675-685 3cem d3cema1 A:487-497,561-570,649-660,661-666,675-685 1fs4 d1fs4a_ A:487-497,561-570,649-660,661-666,675-685 1wut d1wuta1 A:487-497,561-570,649-660,661-666,675-685 7gpb d7gpbc_ C:487-497,561-570,649-660,661-666,675-685 1noi d1noib_ B:487-497,561-570,649-660,661-666,675-685 2g9q d2g9qa1 A:487-497,561-570,649-660,661-666,675-685 2pri d2pria_ A:487-497,561-570,649-660,661-666,675-685 1ggn d1ggna_ A:487-497,561-570,649-660,661-666,675-685 2qrp d2qrpa1 A:487-497,561-570,649-660,661-666,675-685 1fu7 d1fu7a_ A:487-497,561-570,649-660,661-666,675-685 1bx3 d1bx3a_ A:487-497,561-570,649-660,661-666,675-685 1noi d1noia_ A:487-497,561-570,649-660,661-666,675-685 8gpb d8gpba_ A:487-497,561-570,649-660,661-666,675-685 2asv d2asvb1 B:452-462,526-535,614-625,626-631,640-650 1hlf d1hlfa_ A:487-497,561-570,649-660,661-666,675-685 2pyi d2pyia1 A:487-497,561-570,649-660,661-666,675-685 2qrq d2qrqa1 A:487-497,561-570,649-660,661-666,675-685 1k06 d1k06a_ A:487-497,561-570,649-660,661-666,675-685 1axr d1axra_ A:487-497,561-570,649-660,661-666,675-685 2zb2 d2zb2a1 A:487-497,561-570,649-660,661-666,675-685 2ati d2atia1 A:487-497,561-570,649-660,661-666,675-685 1l5s d1l5sa_ A:487-497,561-570,649-660,661-666,675-685 1h5u d1h5ua_ A:487-497,561-570,649-660,661-666,675-685 1k08 d1k08a_ A:487-497,561-570,649-660,661-666,675-685 3ceh d3cehb1 B:487-497,561-570,649-660,661-666,675-685 1gpa d1gpaa_ A:487-497,561-570,649-660,661-666,675-685 2skd d2skda_ A:487-497,561-570,649-660,661-666,675-685 3cem d3cemb1 B:487-497,561-570,649-660,661-666,675-685 2qrg d2qrga1 A:487-497,561-570,649-660,661-666,675-685 1fu8 d1fu8a_ A:487-497,561-570,649-660,661-666,675-685 1p4g d1p4ga_ A:487-497,561-570,649-660,661-666,675-685 1fty d1ftya_ A:487-497,561-570,649-660,661-666,675-685 1z62 d1z62a1 A:487-497,561-570,649-660,661-666,675-685 2qn7 d2qn7a1 A:487-497,561-570,649-660,661-666,675-685 1ww2 d1ww2a1 A:487-497,561-570,649-660,661-666,675-685 2qn9 d2qn9a1 A:487-497,561-570,649-660,661-666,675-685 2gpn d2gpna_ A:487-497,561-570,649-660,661-666,675-685 2g9v d2g9va1 A:487-497,561-570,649-660,661-666,675-685 2ati d2atib1 B:487-497,561-570,649-660,661-666,675-685 2fet d2feta1 A:487-497,561-570,649-660,661-666,675-685 1pyg d1pygc_ C:487-497,561-570,649-660,661-666,675-685 1p4j d1p4ja_ A:487-497,561-570,649-660,661-666,675-685 2qrh d2qrha1 A:487-497,561-570,649-660,661-666,675-685 1p2g d1p2ga_ A:487-497,561-570,649-660,661-666,675-685 1lwn d1lwna_ A:487-497,561-570,649-660,661-666,675-685 2qn1 d2qn1a1 A:487-497,561-570,649-660,661-666,675-685 2g9u d2g9ua1 A:487-497,561-570,649-660,661-666,675-685 2f3u d2f3ua1 A:487-497,561-570,649-660,661-666,675-685 1l7x d1l7xa_ A:487-497,561-570,649-660,661-666,675-685 2f3s d2f3sa1 A:487-497,561-570,649-660,661-666,675-685 1z6p d1z6pa1 A:487-497,561-570,649-660,661-666,675-685 2ske d2skea_ A:487-497,561-570,649-660,661-666,675-685 1qm5 d1qm5b_ B:452-462,526-535,614-625,626-631,640-650 1c50 d1c50a_ A:487-497,561-570,649-660,661-666,675-685 1qm5 d1qm5a_ A:452-462,526-535,614-625,626-631,640-650 2f3q d2f3qa1 A:487-497,561-570,649-660,661-666,675-685 9gpb d9gpbb_ B:487-497,561-570,649-660,661-666,675-685 1ww3 d1ww3a1 A:487-497,561-570,649-660,661-666,675-685 1f0k d1f0ka_ A:69-78,98-105,105-119,121-127,132-142 1fc0 d1fc0b_ B:1487-1497,1561-1570,1649-1660,1661-1666,1675-1685 2off d2offa1 A:487-497,561-570,649-660,661-666,675-685 1xl0 d1xl0a1 A:487-497,561-570,649-660,661-666,675-685 1kti d1ktia_ A:487-497,561-570,649-660,661-666,675-685 1xl1 d1xl1a1 A:487-497,561-570,649-660,661-666,675-685 1fc0 d1fc0a_ A:487-497,561-570,649-660,661-666,675-685 1p4h d1p4ha_ A:487-497,561-570,649-660,661-666,675-685 2ff5 d2ff5a1 A:487-497,561-570,649-660,661-666,675-685 1xc7 d1xc7a1 A:487-497,561-570,649-660,661-666,675-685 1p2d d1p2da_ A:487-497,561-570,649-660,661-666,675-685 1em6 d1em6a_ A:487-497,561-570,649-660,661-666,675-685 3ceh d3ceha1 A:487-497,561-570,649-660,661-666,675-685 1xkx d1xkxa1 A:487-497,561-570,649-660,661-666,675-685 2f3p d2f3pa1 A:487-497,561-570,649-660,661-666,675-685 2qnb d2qnba1 A:487-497,561-570,649-660,661-666,675-685 2skc d2skca_ A:487-497,561-570,649-660,661-666,675-685 1em6 d1em6b_ B:487-497,561-570,649-660,661-666,675-685 1abb d1abba_ A:487-497,561-568,649-660,661-666,675-685 2qln d2qlna1 A:487-497,561-570,649-660,661-666,675-685 2qn3 d2qn3a1 A:487-497,561-570,649-660,661-666,675-685 1p29 d1p29a_ A:487-497,561-570,649-660,661-666,675-685 2ieg d2iegb1 B:487-497,561-570,649-660,661-666,675-685 1gpa d1gpac_ C:487-497,561-568,649-660,661-666,675-685 2qrm d2qrma1 A:487-497,561-570,649-660,661-666,675-685 2qn8 d2qn8a1 A:487-497,561-570,649-660,661-666,675-685 1exv d1exva_ A:487-497,561-570,649-660,661-666,675-685 1l7x d1l7xb_ B:487-497,561-570,649-660,661-666,675-685 1c8l d1c8la_ A:487-497,561-570,649-660,661-666,675-685 1e1y d1e1ya_ A:487-497,561-570,649-660,661-666,675-685 1lwo d1lwoa_ A:487-497,561-570,649-660,661-666,675-685 2ieg d2iega1 A:487-497,561-570,649-660,661-666,675-685 3amv d3amva_ A:487-497,561-570,649-660,661-666,675-685 1p2b d1p2ba_ A:487-497,561-570,649-660,661-666,675-685 1l5s d1l5sb_ B:487-497,561-570,649-660,661-666,675-685 2zb2 d2zb2b1 B:487-497,561-570,649-660,661-666,675-685 2qlm d2qlma1 A:487-497,561-570,649-660,661-666,675-685 1exv d1exvb_ B:487-497,561-570,649-660,661-666,675-685 2g9r d2g9ra1 A:487-497,561-570,649-660,661-666,675-685 1l5r d1l5ra_ A:487-497,561-570,649-660,661-666,675-685 1z6q d1z6qa1 A:487-497,561-570,649-660,661-666,675-685 2iei d2ieia1 A:487-497,561-570,649-660,661-666,675-685 2iei d2ieib1 B:487-497,561-570,649-660,661-666,675-685 1pyg d1pygd_ D:487-497,561-570,649-660,661-666,675-685 1abb d1abbb_ B:487-497,561-568,649-660,661-666,675-685 1noi d1noic_ C:487-497,561-570,649-660,661-666,675-685 1ahp d1ahpb_ B:452-462,526-535,614-625,626-631,640-650 1ahp d1ahpa_ A:452-462,526-535,614-625,626-631,640-650 2gpa d2gpaa_ A:487-497,561-570,649-660,661-666,675-685 1ygp d1ygpa_ A:487-497,561-570,649-660,661-666,675-685 1l5r d1l5rb_ B:487-497,561-570,649-660,661-666,675-685 7gpb d7gpba_ A:487-497,561-568,649-660,661-666,675-685 9gpb d9gpbd_ D:487-497,561-570,649-660,661-666,675-685 1b4d d1b4da_ A:487-497,561-570,649-660,661-666,675-685 1ygp d1ygpb_ B:487-497,561-570,649-660,661-666,675-685 1pyg d1pyga_ A:487-497,561-570,649-660,661-666,675-685 1abb d1abbc_ C:487-497,561-568,649-660,661-666,675-685 7gpb d7gpbb_ B:487-497,561-568,649-660,661-666,675-685 7gpb d7gpbd_ D:487-497,561-568,649-660,661-666,675-685 9gpb d9gpbc_ C:487-497,561-570,649-660,661-665,675-685 1abb d1abbd_ D:487-497,561-568,649-660,661-666,675-685 1gpa d1gpad_ D:487-497,561-568,649-660,661-666,675-685 9gpb d9gpba_ A:487-497,561-568,649-660,661-666,675-685 1vgv d1vgvc_ C:171-188,205-212,272-283,284-289,290-301 1o6c d1o6cb_ B:174-185,199-205,266-277,278-283,284-295 1vgv d1vgva_ A:171-188,205-212,272-283,284-289,290-301 1o6c d1o6ca_ A:174-185,199-205,266-277,278-283,286-295 1f6d d1f6da_ A:171-188,205-212,272-283,284-289,290-301 1f6d d1f6dd_ D:171-188,205-212,272-283,284-289,290-301 1vgv d1vgvd_ D:171-188,205-213,272-283,284-290,290-301 1uqt d1uqta_ A:228-238,254-263,340-351,352-357,364-374 1uqu d1uqua_ A:228-238,254-263,340-351,352-357,364-374 1gz5 d1gz5b_ B:228-238,254-263,340-351,352-357,364-374 1gz5 d1gz5c_ C:228-238,254-263,340-351,352-357,364-374 1gz5 d1gz5a_ A:228-238,254-263,340-351,352-357,364-374 1gz5 d1gz5d_ D:228-238,254-263,340-351,352-357,364-374 1uqt d1uqtb_ B:228-238,254-263,340-351,352-357,364-374 1uqu d1uqub_ B:228-238,254-263,340-351,352-357,364-374 1psw d1pswa_ A:38-49,181-186,251-263,262-268,270-280 1v4v d1v4vb_ B:176-190,199-205,264-275,275-281,282-293 1l5v d1l5va_ A:112-130,526-535,614-625,626-631,640-650 2asv d2asva1 A:112-130,526-535,614-625,626-631,640-650 2asv d2asvb1 B:112-130,526-535,614-625,626-631,640-650 1l5v d1l5vb_ B:112-130,526-535,614-625,626-631,640-650 1l5w d1l5wa_ A:112-130,526-535,614-625,626-631,640-650 1e4o d1e4oa_ A:113-130,526-535,614-625,626-631,640-650 1e4o d1e4ob_ B:113-130,526-535,614-625,626-631,640-650 1ahp d1ahpb_ B:113-130,526-535,614-625,626-631,640-650 1ahp d1ahpa_ A:113-130,526-535,614-625,626-631,640-650 1l5w d1l5wb_ B:112-130,526-535,614-625,626-631,640-650 2av6 d2av6a1 A:112-130,526-535,614-625,626-631,640-650 2av6 d2av6b1 B:112-130,526-535,614-625,626-631,640-650 2aw3 d2aw3b1 B:112-130,526-535,614-625,626-631,640-650 1l6i d1l6ib_ B:112-130,526-535,614-625,626-631,640-650 1l6i d1l6ia_ A:112-130,526-535,614-625,626-631,640-650 2aw3 d2aw3a1 A:112-130,526-535,614-625,626-631,640-650 1qm5 d1qm5a_ A:112-130,526-535,614-625,626-631,640-650 1qm5 d1qm5b_ B:112-130,526-535,614-625,626-631,640-650 6. c.1.13 Malate synthase G TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites 1n8w d1n8wb_ B:14-26,266-273,280-297,334-341,359-378 2gq3 d2gq3b1 B:14-26,266-273,280-297,334-341,359-378 1n8w d1n8wa_ A:13-26,266-273,280-297,334-341,359-378 1d8c d1d8ca_ A:14-29,265-272,279-296,333-340,358-378 1n8i d1n8ia_ A:14-26,266-273,280-297,334-341,359-378 2gq3 d2gq3a1 A:14-26,266-273,280-297,334-341,359-378 1p7t d1p7ta_ A:13-29,265-272,279-296,333-340,358-378 1p7t d1p7tb_ B:13-26,265-272,279-296,333-340,358-378 2jqx d2jqxa1 A:13-24,265-270,279-296,333-338,359-378 1y8b d1y8ba_ A:13-24,265-270,279-296,333-338,359-378 9. c.39.1 Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT) 3 layers: a/b/a, parallel beta-sheet of 7 strands, order 3214567 1j33 d1j33a_ A:166-180,246-250,251-266,271-276,280-291 1jh8 d1jh8a_ A:3-11,60-69,144-166,168-176,240-257 1l4n d1l4na_ A:3-11,60-69,144-166,168-176,240-257 1l5l d1l5la_ A:3-11,60-69,144-166,168-176,240-257 1l4e d1l4ea_ A:3-11,60-69,144-166,168-176,240-257 1l4g d1l4ga_ A:178-192,259-263,264-279,284-290,293-304 1l5m d1l5ma_ A:178-192,259-263,264-279,284-290,293-304 1l4n d1l4na_ A:178-192,259-263,264-279,284-289,293-304 1jhm d1jhma_ A:178-192,259-263,264-279,284-288,293-304 1jhp d1jhpa_ A:178-192,259-263,264-279,284-288,293-304 1l5n d1l5na_ A:178-192,259-263,264-279,284-288,293-304 1l4e d1l4ea_ A:178-192,259-263,264-279,284-288,293-304 1jha d1jhaa_ A:178-192,259-263,264-279,284-288,293-304 1l5f d1l5fa_ A:178-192,259-263,264-279,284-288,293-304 1jhu d1jhua_ A:178-192,259-263,264-279,284-288,293-304 1jh8 d1jh8a_ A:178-192,259-263,264-279,284-288,293-304 1l4b d1l4ba_ A:178-192,259-263,264-279,284-288,293-304 1l4l d1l4la_ A:178-192,259-263,264-279,284-288,293-304 1jhq d1jhqa_ A:178-192,259-263,264-279,284-288,293-304 1jhy d1jhya_ A:178-192,259-263,264-279,284-288,293-304 1l4k d1l4ka_ A:178-192,259-263,264-279,284-288,293-304 1jhx d1jhxa_ A:178-192,259-263,264-279,284-288,293-304 1l4h d1l4ha_ A:178-192,259-263,264-279,284-288,293-304 1l4f d1l4fa_ A:178-192,259-263,264-279,284-288,293-304 1d0s d1d0sa_ A:178-192,259-263,264-279,284-288,293-304 1l4m d1l4ma_ A:178-192,259-263,264-279,284-288,293-304 1jho d1jhoa_ A:178-192,259-263,264-279,284-288,293-304 1jhv d1jhva_ A:178-192,259-263,264-279,284-288,293-304 1l5o d1l5oa_ A:178-192,259-263,264-279,284-288,293-304 1l5l d1l5la_ A:178-192,259-263,264-279,284-288,293-304 1jhr d1jhra_ A:178-192,259-263,264-279,284-288,293-304 1d0v d1d0va_ A:178-192,259-263,264-279,284-288,293-304 1l5k d1l5ka_ A:178-192,259-263,264-279,284-288,293-304 11. e.26.1 Prismane protein-like Prismane protein-like 3 domains: (1) spectrin repeat-like 3-helical bundle; (2 and 3) alpha/beta: Rossmann-fold topology 1su7 d1su7a_ A:161-169,437-445,525-544,551-557,561-575 2z8y d2z8yn1 N:62-70,155-162,211-231,249-256,259-273 1oao d1oaoc_ C:62-70,155-162,211-231,249-256,259-273 3b52 d3b52x1 X:161-169,437-445,525-544,551-557,561-575 3b53 d3b53x1 X:161-169,437-445,525-544,551-557,561-575 3b51 d3b51x1 X:161-169,437-445,525-544,551-557,561-575 1su8 d1su8a_ A:161-169,437-445,525-544,551-557,561-575 1suf d1sufa_ A:161-169,437-445,525-544,551-557,561-575 1oao d1oaod_ D:62-70,155-162,211-231,249-256,259-273 1su6 d1su6a_ A:161-169,437-445,525-544,551-557,561-575 2z8y d2z8yp1 P:62-70,155-162,210-231,249-256,259-273 2z8y d2z8yc1 C:183-191,461-469,549-568,575-581,585-599 1ru3 d1ru3a_ A:65-73,158-165,214-234,252-259,262-276 2z8y d2z8yo1 O:62-70,153-162,211-231,249-256,259-273 2z8y d2z8yb1 B:183-191,461-469,549-568,575-581,585-599 2z8y d2z8ym1 M:62-70,153-162,211-231,249-256,259-273 1mjg d1mjgm_ M:62-70,153-162,211-231,249-256,259-273 1mjg d1mjgo_ O:62-70,153-162,211-231,249-256,259-273 1mjg d1mjgp_ P:62-70,153-162,211-231,249-256,259-273 1mjg d1mjgn_ N:62-70,153-162,211-231,249-256,259-273 1oao d1oaob_ B:183-190,461-469,549-568,575-581,585-599 1oao d1oaoa_ A:183-190,461-469,549-568,575-581,585-599 2z8y d2z8ya1 A:183-190,461-469,549-568,575-581,585-599 2z8y d2z8yd1 D:183-190,461-469,549-568,575-581,585-599 1mjg d1mjgd_ D:183-190,461-468,549-568,575-581,585-599 1mjg d1mjga_ A:183-190,461-468,549-568,575-581,585-599 1mjg d1mjgc_ C:183-190,461-468,549-568,575-581,585-599 1mjg d1mjgb_ B:183-190,461-468,549-568,575-581,585-599 1jqk d1jqkd_ D:165-172,443-449,530-549,556-562,566-580 1jqk d1jqkf_ F:165-172,443-449,530-549,556-562,566-580 1jqk d1jqkb_ B:165-172,443-449,530-549,556-562,566-580 1jqk d1jqka_ A:165-172,443-449,530-549,556-562,566-580 1jqk d1jqkc_ C:165-172,443-449,530-549,556-562,566-580 1jqk d1jqke_ E:165-172,443-449,530-549,556-562,566-580 2z8y d2z8yd1 D:226-257,275-283,284-299,309-316,317-327 1upx d1upxa_ A:187-218,233-239,241-253,257-262,263-272 2z8y d2z8yc1 C:226-257,274-283,284-299,307-316,317-327 1mjg d1mjgb_ B:226-257,275-283,284-299,309-316,317-327 1oao d1oaoa_ A:226-257,274-283,284-299,307-316,317-327 1mjg d1mjga_ A:226-257,275-283,284-299,309-316,317-327 1oao d1oaob_ B:226-257,274-283,284-299,307-316,317-327 1mjg d1mjgd_ D:226-257,275-283,284-299,309-316,317-327 1oa1 d1oa1a_ A:191-222,237-243,245-257,261-266,267-275 2z8y d2z8yb1 B:226-257,274-283,284-299,307-316,317-327 1w9m d1w9ma1 A:191-222,237-243,245-257,261-266,267-275 1mjg d1mjgc_ C:226-257,275-283,284-299,309-316,317-327 1gnl d1gnla_ A:187-218,233-239,241-253,257-262,263-272 3b52 d3b52x1 X:204-235,252-260,262-277,285-294,295-305 2z8y d2z8ya1 A:226-257,274-283,284-299,308-316,317-327 1su7 d1su7a_ A:204-235,252-260,262-277,285-294,295-305 3b53 d3b53x1 X:204-235,252-260,262-277,285-294,295-305 1e2u d1e2ua_ A:191-222,237-243,245-257,261-266,267-275 1e9v d1e9va_ A:191-222,237-243,245-257,261-266,267-275 1gn9 d1gn9b_ B:187-218,233-239,241-253,257-262,263-272 1gnt d1gnta_ A:191-222,237-243,245-257,261-266,267-275 1oa0 d1oa0a_ A:187-218,233-239,241-253,257-262,263-272 1gn9 d1gn9a_ A:187-218,233-239,241-253,257-262,263-272 3b51 d3b51x1 X:204-235,252-260,262-277,285-294,295-305 1suf d1sufa_ A:204-235,252-260,262-277,285-294,295-305 1su6 d1su6a_ A:204-235,252-260,262-277,285-294,295-305 1upx d1upxb_ B:187-218,233-239,241-253,257-262,263-271 1gnl d1gnlb_ B:187-218,233-239,241-253,257-262,263-271 1su8 d1su8a_ A:204-235,252-260,262-277,285-294,295-305 1oa0 d1oa0b_ B:187-218,233-239,241-253,257-262,263-271 1e1d d1e1da_ A:191-222,237-243,245-257,261-266,267-275 1jqk d1jqke_ E:208-239,256-264,266-281,290-298,298-310 1jqk d1jqka_ A:208-239,256-264,266-281,290-298,298-310 1jqk d1jqkd_ D:208-239,256-264,266-281,290-298,298-310 1jqk d1jqkb_ B:208-239,256-264,266-281,290-298,298-310 1jqk d1jqkc_ C:208-239,256-264,266-281,290-299,299-310 1jqk d1jqkf_ F:208-239,256-264,266-281,290-299,299-310 13. c.92.2 "Helical backbone" metal receptor contains a long alpha helical insertion in the interdomain linker ! Chelatase-like duplication: tandem repeat of two domains; 3 layers (a/b/a); parallel beta-sheet of 4 strands, order 2134 1l5h d1l5ha_ A:190-209,221-227,258-268,269-274,279-291 1h1l d1h1ld_ D:190-210,219-224,273-283,284-289,294-306 1m1y d1m1yk_ K:190-211,221-227,258-268,269-274,279-291 1m1y d1m1yc_ C:190-211,221-227,258-268,269-274,279-291 1m1y d1m1ya_ A:190-211,221-227,258-268,269-274,279-291 1m1y d1m1yi_ I:190-211,221-227,258-268,269-274,279-291 1qh1 d1qh1d_ D:190-210,219-224,273-283,284-289,294-306 1qgu d1qgud_ D:190-210,219-224,273-283,284-289,294-306 1qh8 d1qh8d_ D:190-210,219-224,273-283,284-289,294-306 3min d3minb_ B:192-213,223-229,277-287,288-294,298-310 1h1l d1h1la_ A:189-210,219-225,256-266,267-272,277-289 1l5h d1l5hb_ B:192-213,223-229,277-287,288-294,298-310 1qh8 d1qh8c_ C:189-210,219-225,256-266,267-272,277-289 1m1y d1m1yd_ D:192-213,223-229,277-287,288-294,298-310 1m1y d1m1yl_ L:192-213,223-229,277-287,288-294,298-310 2afk d2afkc1 C:190-211,221-227,258-268,269-274,279-291 1qh8 d1qh8a_ A:189-210,219-225,256-266,267-272,277-289 1qgu d1qguc_ C:189-210,219-225,256-266,267-272,277-289 1qh1 d1qh1c_ C:189-210,219-225,256-266,267-272,277-289 1m1y d1m1yj_ J:192-213,223-229,277-287,288-294,298-310 2afk d2afka1 A:190-211,221-227,258-268,269-274,279-291 1m34 d1m34l_ L:192-213,223-229,277-287,288-294,298-310 1qgu d1qgua_ A:189-210,219-225,256-266,267-272,277-289 1m1y d1m1yb_ B:192-213,223-229,277-287,288-294,298-310 1qh1 d1qh1a_ A:189-210,219-225,256-266,267-272,277-289 3min d3mind_ D:192-213,223-229,277-287,288-294,298-310 1m34 d1m34b_ B:192-213,223-229,277-287,288-294,298-310 2afh d2afhd1 D:192-213,223-229,277-287,288-294,298-310 2afh d2afhb1 B:192-213,223-229,277-287,288-294,298-310 1fp4 d1fp4d_ D:192-213,223-229,277-287,288-294,298-310 2afk d2afkd1 D:192-213,223-229,277-287,288-294,298-310 1fp4 d1fp4b_ B:192-213,223-229,277-287,288-294,298-310 1m1n d1m1ng_ G:190-211,221-227,258-268,269-274,279-291 1m34 d1m34d_ D:192-213,223-229,277-287,288-294,298-310 1m1n d1m1ne_ E:190-211,221-227,258-268,269-274,279-291 1h1l d1h1lc_ C:189-210,219-225,256-266,267-272,277-289 2min d2mind_ D:192-213,223-229,277-287,288-294,298-310 2min d2minb_ B:192-213,223-229,277-287,288-294,298-310 1m34 d1m34a_ A:190-211,221-227,258-268,269-274,279-291 1m1n d1m1nc_ C:190-211,221-227,258-268,269-274,279-291 1m1n d1m1nh_ H:192-213,223-229,277-287,288-294,298-310 1m1n d1m1nb_ B:192-213,223-229,277-287,288-294,298-310 1g20 d1g20d_ D:192-213,223-229,277-287,288-294,298-310 2afk d2afkb1 B:192-213,223-229,277-287,288-294,298-310 1m1n d1m1na_ A:190-211,221-227,258-268,269-274,279-291 1m34 d1m34j_ J:192-213,223-229,277-287,288-294,298-310 1m34 d1m34i_ I:190-211,221-227,258-268,269-274,279-291 1g20 d1g20b_ B:192-213,223-229,277-287,288-294,298-310 1m1n d1m1nf_ F:192-213,223-229,277-287,288-294,298-310 1g20 d1g20c_ C:190-211,221-227,258-268,269-274,279-291 1m34 d1m34k_ K:190-211,221-227,258-268,269-274,279-291 1m1n d1m1nd_ D:192-213,223-229,277-287,288-294,298-310 2min d2mina_ A:190-211,221-227,258-268,269-274,279-291 1g20 d1g20a_ A:190-211,221-227,258-268,269-274,279-291 2min d2minc_ C:190-211,221-227,258-268,269-274,279-291 2afh d2afha1 A:190-211,221-227,258-268,269-274,279-291 2afh d2afhc1 C:190-211,221-227,258-268,269-274,279-291 1g21 d1g21b_ B:192-213,223-228,277-287,288-293,298-310 1fp4 d1fp4a_ A:190-211,221-227,258-268,269-274,279-291 1fp4 d1fp4c_ C:190-211,221-227,258-268,269-274,279-291 1m34 d1m34c_ C:190-211,221-227,258-268,269-274,279-291 1n2c d1n2cc_ C:190-211,221-227,258-268,269-274,279-291 1n2c d1n2ca_ A:190-211,221-227,258-268,269-274,279-291 3min d3mina_ A:190-211,221-227,258-268,269-274,279-291 2afi d2afib1 B:192-213,223-229,277-287,289-294,298-310 2afi d2afid1 D:192-213,223-229,277-287,289-294,298-310 2afi d2afij1 J:192-213,223-229,277-287,289-294,298-310 2afi d2afil1 L:192-213,223-229,277-287,289-294,298-310 1g21 d1g21c_ C:190-211,221-227,258-268,269-274,279-291 1g21 d1g21a_ A:190-211,221-227,258-268,269-274,279-291 3min d3minc_ C:190-213,221-227,258-268,269-274,279-291 2afi d2afik1 K:190-211,221-227,258-269,269-274,279-291 2afi d2afii1 I:190-211,221-227,258-269,269-274,279-291 2afi d2afia1 A:190-211,221-227,258-269,269-274,279-291 2afi d2afic1 C:190-211,221-227,258-269,269-274,279-291 1g21 d1g21d_ D:192-213,223-228,277-288,288-293,298-310 15. e.50.1 AF1104-like AF1104-like 2 domains; d1: [all-alpha; 3-helical bundle, similar to the immunoglobulin/albumin-binding domain-like fold (scop_cf 46996)]; d2: [alpha/beta; 3 layers, a/b/a; 6-stranded mixed beta-sheet, order: 321456, strand 6 is antiparallel to the rest] 2g8l d2g8lb1 B:69-94,149-155,157-175,177-186,193-201 2q40 d2q40a1 A:120-135,213-220,221-241,242-250,258-270 2g8l d2g8la1 A:69-93,149-155,157-176,177-186,193-201 1xfi d1xfia_ A:118-135,213-219,221-241,242-250,258-270 16. c.40.1 Methylesterase CheB, C-terminal domain Methylesterase CheB, C-terminal domain 3 layers: a/b/a, parallel beta-sheet of 7 strands, order 3421567 1a2o d1a2oa2 A:86-100,157-164,166-178,183-190,192-208 1a2o d1a2ob2 B:86-100,157-164,165-178,183-190,192-207 17. c.27.1 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32145; Rossmann-like 2elc d2elcc2 C:48-63,73-79,171-181,186-192,194-209 1zxy d1zxyc2 C:51-66,74-80,171-181,186-192,194-209 1khd d1khdd2 D:61-76,86-92,185-195,200-206,208-223 1zyk d1zykc2 C:51-66,74-80,171-181,186-192,194-209 1gxb d1gxbd2 D:51-66,74-80,171-181,186-192,194-209 1zxy d1zxyd2 D:51-66,74-80,171-181,186-192,194-209 1zxy d1zxya2 A:51-66,74-80,171-181,186-192,194-209 1zyk d1zykd2 D:51-66,74-80,171-181,186-192,194-209 1zxy d1zxyb2 B:51-66,74-80,171-181,186-192,194-209 2gvq d2gvqd2 D:51-66,74-80,171-181,186-192,194-209 2gvq d2gvqc2 C:51-66,74-79,171-181,186-192,194-209 1khd d1khda2 A:61-76,86-92,185-195,200-206,208-223 1gxb d1gxbc2 C:51-66,74-79,171-181,186-192,194-209 1khd d1khdb2 B:61-76,86-92,185-195,200-206,208-223 1o17 d1o17c2 C:51-66,74-78,171-181,186-192,194-209 1o17 d1o17d2 D:51-66,74-80,171-181,186-192,194-209 1kgz d1kgza2 A:61-76,86-92,185-195,200-206,208-223 1khd d1khdc2 C:61-76,86-92,185-195,200-206,208-223 2gvq d2gvqa2 A:51-66,74-80,171-181,186-192,194-209 1kgz d1kgzb2 B:61-76,86-92,185-195,200-206,208-223 1zyk d1zyka2 A:51-66,74-80,171-181,186-192,194-209 2elc d2elcd2 D:48-63,73-79,171-181,186-192,194-209 2gvq d2gvqb2 B:51-66,74-80,171-181,186-192,194-209 2elc d2elca2 A:48-63,73-79,171-181,186-192,194-209 1o17 d1o17a2 A:51-66,74-78,171-181,186-192,194-209 1o17 d1o17b2 B:51-66,74-78,171-181,186-192,194-209 1gxb d1gxbb2 B:51-66,74-79,171-181,186-192,194-209 1gxb d1gxba2 A:51-66,74-79,171-181,186-192,194-209 1v8g d1v8ga2 A:48-63,73-79,171-181,186-192,194-209 1zyk d1zykb2 B:51-67,74-80,171-181,186-192,194-209 1brw d1brwb2 B:1051-1067,1078-1084,1176-1192,1194-1203,1210-1229 1v8g d1v8gb2 B:48-64,73-79,171-181,186-192,194-209 2elc d2elcb2 B:48-64,73-79,171-181,186-192,194-209 1brw d1brwa2 A:51-67,78-84,176-192,194-203,210-229 1uou d1uoua2 A:84-99,111-118,210-226,228-237,244-263 1tpt d1tpta2 A:52-67,80-87,179-195,197-206,213-232 2tpt d2tpta2 A:52-68,79-87,179-194,197-206,213-232 1azy d1azya2 A:52-68,79-87,179-194,197-206,213-232 1azy d1azyb2 B:52-68,79-87,179-194,197-206,213-232 1otp d1otpa2 A:52-68,79-87,179-194,197-207,213-232 21. c.142.1 Nqo1 FMN-binding domain-like Nqo1 FMN-binding domain-like 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 3214 2fug d2fug12 1:28-36,87-93,110-126,128-136,138-156 2fug d2fugs2 S:28-36,87-93,110-126,128-136,138-156 2fug d2fuga2 A:28-36,87-93,110-126,128-136,138-156 2fug d2fugj2 J:28-36,87-93,110-126,128-136,138-156 23. c.1.23 FAD-linked oxidoreductase distinct cofactor-binding mode from both FMN- and NAD(P)-linked TIM-barrel oxidoreductases; families are related by a circular permutation ! TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites 1tj1 d1tj1a2 A:102-115,398-405,407-425,427-434,458-477 2fzn d2fzna2 A:102-115,398-405,407-425,427-434,458-477 1tj2 d1tj2a2 A:102-115,398-405,407-425,427-434,458-477 1tiw d1tiwa2 A:102-115,398-405,407-425,427-434,458-477 1tj0 d1tj0a2 A:102-115,398-405,407-425,427-434,458-477 2fzm d2fzma2 A:102-115,398-405,407-425,427-434,458-477