1. e.53.1 QueA-like
QueA-like 2 domains; d1 (1-64,174-335) [alpha/beta; 3 layers, a/b/a; mixed beta sheet of 9 strands, order: 219863457; strands 1, 5 and 8 are antiparallel to the rest]; d2 (65-142) [all-beta; barrel, closed (n=6, S=10); greek-key; topologically similar to the split barrel fold (scop_cf 50474)
1vky d1vkyb_ B:26-34,35-43,42-51,307-322,330-335
1vky d1vkya_ A:26-34,35-43,42-51,307-322,330-335
1wdi d1wdia_ A:27-33,39-45,44-53,317-332,340-345
2. c.43.1 CoA-dependent acyltransferases
CoA-dependent acyltransferases core: 2 layers, a/b; mixed beta-sheet of 6 strands, order 324561; strands 3 & 6 are antiparallel to the rest
1s5o d1s5oa1 A:180-187,188-195,204-220,248-261,261-269
1t7q d1t7qa1 A:201-208,209-216,225-241,269-282,282-290
2h3p d2h3pa1 A:201-208,209-216,225-241,269-282,282-290
2h3w d2h3wa1 A:201-208,209-216,225-241,269-282,282-290
1t7o d1t7oa1 A:201-208,209-216,225-241,269-282,282-290
1t7n d1t7na1 A:201-208,209-216,225-241,269-282,282-290
2h3u d2h3ua1 A:201-208,209-216,225-241,269-282,282-290
1t7q d1t7qb1 B:201-208,209-216,225-241,269-282,282-290
1ndf d1ndfb1 B:201-208,209-216,225-241,269-282,282-290
1ndi d1ndib1 B:201-208,209-216,225-241,269-282,282-290
2h3u d2h3ub1 B:201-208,209-216,225-241,269-282,282-290
1nm8 d1nm8a1 A:180-187,188-195,204-220,248-261,261-269
1ndb d1ndba1 A:201-208,209-216,225-241,269-282,282-290
2h3w d2h3wb1 B:201-208,209-216,225-241,269-282,282-290
2h3p d2h3pb1 B:201-208,209-216,225-241,269-282,282-290
1ndi d1ndia1 A:201-208,209-216,225-241,269-282,282-289
1ndb d1ndbb1 B:201-208,209-216,225-241,269-282,282-290
1ndf d1ndfa1 A:201-208,209-216,225-241,269-282,282-290
1t1u d1t1ua1 A:194-201,202-209,217-235,263-276,276-285
1q9j d1q9jb2 B:259-268,284-293,299-318,326-333,341-346
1xmc d1xmcb1 B:190-197,198-205,213-232,259-272,272-280
1q9j d1q9ja2 A:259-268,284-293,299-318,326-333,341-346
1xmd d1xmda1 A:190-197,198-205,213-232,259-272,272-280
1xl8 d1xl8a1 A:190-197,198-205,213-232,259-272,272-282
1xl7 d1xl7b1 B:190-197,198-205,213-232,259-272,272-282
1xmc d1xmca1 A:190-197,198-205,213-232,259-272,272-282
1q6x d1q6xb1 B:193-201,202-210,217-235,263-276,276-285
1q6x d1q6xa1 A:193-201,202-210,217-235,263-276,276-285
1xl8 d1xl8b1 B:190-197,198-205,213-232,259-272,272-282
1xmd d1xmdb1 B:190-197,198-205,213-232,259-272,272-282
1t7n d1t7na1 A:201-208,209-216,225-241,247-254,282-290
1ndi d1ndib1 B:201-208,209-216,225-241,247-254,282-290
1xl7 d1xl7a1 A:190-197,198-205,213-232,259-272,272-282
1nm8 d1nm8a1 A:180-187,188-195,204-220,226-233,261-269
1ndf d1ndfb1 B:201-208,209-216,225-241,247-254,282-290
1t7q d1t7qa1 A:201-208,209-216,225-241,247-254,282-290
2h3p d2h3pb1 B:201-208,209-216,225-241,247-254,282-290
1t7q d1t7qb1 B:201-208,209-216,225-241,247-254,282-290
2h3w d2h3wb1 B:201-208,209-216,225-241,247-254,282-290
1ndb d1ndba1 A:201-208,209-216,225-241,247-254,282-290
2h3u d2h3ub1 B:201-208,209-216,225-241,247-254,282-290
1s5o d1s5oa1 A:180-187,188-195,204-220,226-233,261-269
2h3p d2h3pa1 A:201-208,209-216,225-241,247-254,282-290
2h3u d2h3ua1 A:201-208,209-216,225-241,247-254,282-290
1ndb d1ndbb1 B:201-208,209-216,225-241,247-254,282-290
2h3w d2h3wa1 A:201-208,209-216,225-241,247-254,282-290
1t7o d1t7oa1 A:201-208,209-216,225-241,247-254,282-290
1ndf d1ndfa1 A:201-208,209-216,225-241,247-254,282-290
3. d.41.1 CO dehydrogenase molybdoprotein N-domain-like
alpha/beta-Hammerhead core: beta-BETA-alpha-beta-BETA-beta-alpha; contains a beta-hammerhead motif similar to that in barrel-sandwich hybrids
1rm6 d1rm6a1 A:39-47,103-111,112-124,252-266,267-273
1rm6 d1rm6d1 D:39-47,103-111,112-124,252-266,267-273
1sb3 d1sb3a1 A:39-47,103-111,112-124,252-266,267-273
1sb3 d1sb3d1 D:39-47,103-111,112-124,252-266,267-273
1t3q d1t3qe1 E:42-50,114-122,123-135,262-276,278-283
1n62 d1n62b1 B:48-59,112-124,125-137,278-292,293-299
1n60 d1n60b1 B:48-59,112-124,125-137,278-292,293-299
1n5w d1n5wb1 B:48-59,112-124,125-137,278-292,293-299
1vdv d1vdvb3 B:602-610,665-673,674-685,803-820,821-827
1n61 d1n61e1 E:48-59,112-124,125-137,278-292,293-299
1n62 d1n62e1 E:48-59,112-124,125-137,278-292,293-299
1n5w d1n5we1 E:48-59,112-124,125-137,278-292,293-299
1n63 d1n63e1 E:48-59,112-124,125-137,278-292,293-299
1n63 d1n63b1 B:48-59,112-124,125-137,278-292,293-299
1zxi d1zxib1 B:48-59,112-124,125-137,278-292,293-299
1n61 d1n61b1 B:48-59,112-124,125-137,278-292,293-299
1n60 d1n60e1 E:48-59,112-124,125-137,278-292,293-299
1t3q d1t3qb1 B:42-50,114-122,123-135,262-276,277-283
1ffv d1ffvb1 B:46-56,109-121,122-134,275-289,290-296
1vlb d1vlba3 A:207-217,276-288,289-301,427-441,443-449
1ffu d1ffub1 B:46-56,109-121,122-134,275-289,290-296
1ffv d1ffve1 E:46-56,109-121,122-134,275-289,290-296
1ffu d1ffue1 E:46-56,109-121,122-134,275-289,290-296
1sij d1sija3 A:207-217,276-288,289-300,427-441,443-449
1fiq d1fiqc1 C:602-610,665-673,674-685,799-820,822-827
1dgj d1dgja3 A:207-217,276-288,289-301,429-443,444-450
1n5x d1n5xa3 A:601-612,661-673,674-685,801-820,821-827
1n5x d1n5xb3 B:601-612,661-673,674-685,801-820,821-827
1vdv d1vdva3 A:602-612,661-673,674-685,801-820,821-827
1v97 d1v97b3 B:602-610,665-673,674-685,799-820,821-827
3b9j d3b9jc1 C:602-612,661-673,674-685,799-820,822-827
1fo4 d1fo4b3 B:602-610,665-673,674-685,799-820,821-827
1v97 d1v97a3 A:602-612,661-673,674-685,799-820,821-827
1fo4 d1fo4a3 A:602-612,661-673,674-685,799-820,821-827
1jro d1jroh1 H:32-42,92-104,105-116,229-250,252-257
1jro d1jrob1 B:32-42,92-104,105-116,229-250,252-257
1jrp d1jrpd1 D:32-40,96-104,105-116,228-250,252-257
1jrp d1jrpb1 B:32-40,96-104,105-116,228-250,252-257
1jrp d1jrpf1 F:32-42,92-104,105-116,228-250,252-257
1jrp d1jrph1 H:32-40,96-104,105-116,229-250,251-257
1jro d1jrof1 F:32-42,92-104,105-116,229-250,251-257
1jro d1jrod1 D:32-42,92-104,105-116,228-250,251-257
4. c.55.3 Ribonuclease H-like consists of one domain of this fold !
Ribonuclease H-like motif 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
1io2 d1io2a_ A:1-10,17-27,26-37,79-95,100-106
2dfh d2dfha1 A:1-10,17-27,26-37,79-95,100-106
1eke d1ekea_ A:1-10,17-27,26-37,80-101,103-113
1uax d1uaxa_ A:1-10,17-27,26-37,79-95,100-106
1uax d1uaxb_ B:1-10,17-27,26-37,79-95,100-105
1eke d1ekeb_ B:1-10,17-27,26-37,80-101,104-113
1x1p d1x1pa1 A:1-9,16-27,26-37,79-95,100-106
1i3a d1i3aa_ A:1-9,16-24,26-34,77-94,96-102
5. c.81.1 Formate dehydrogenase/DMSO reductase, domains 1-3 molybdopterine enzyme !
Formate dehydrogenase/DMSO reductase, domains 1-3 contains of two similar intertwined domains related by pseudo dyad; duplication ! core: 3 layers: a/b/a; parallel beta-sheet of 5 strands, order 32451
1ogy d1ogyo2 O:262-269,294-298,299-311,353-369,667-673
1ogy d1ogyc2 C:262-269,294-298,299-311,353-369,667-673
1ogy d1ogya2 A:262-269,294-298,299-311,353-369,667-673
1ogy d1ogye2 E:262-269,294-298,299-311,353-369,667-673
1ogy d1ogym2 M:262-269,294-298,299-311,353-369,667-673
1ogy d1ogyi2 I:262-269,294-298,299-311,353-369,667-673
1ogy d1ogyk2 K:262-269,294-298,299-311,353-369,667-673
1ogy d1ogyg2 G:262-269,294-298,299-311,353-369,667-673
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 657 (enumeration index: query945.1005) of S5
2d0c A:91-100,107-117,116-127,171-192,197-203
2fy3 A:183-191,192-202,207-225,253-266,266-275
3eub L:602-610,665-673,674-685,803-820,821-827
3eub U:602-612,661-673,674-685,799-820,821-827
3eub C:602-612,661-673,674-685,799-820,821-827
3eub 4:602-612,661-673,674-685,799-820,821-827
2e1q C:603-613,662-674,675-687,800-821,822-828
2e1q D:603-613,662-674,675-687,800-821,822-828
2e1q A:603-613,662-674,675-687,800-821,822-828
2e1q B:603-613,662-674,675-687,800-821,822-828
2dff A:1-10,17-27,26-37,79-96,100-106
3amz B:602-610,665-673,674-685,799-820,821-827
3amz A:602-610,665-673,674-685,799-820,821-827
2d0b A:91-100,107-117,116-127,171-192,197-203
2fy2 A:183-191,192-202,207-225,253-266,266-275
2d0a A:91-100,107-117,116-127,171-192,197-203
2nya F:253-260,284-288,289-301,343-359,657-663
2nya A:253-260,284-288,289-301,343-359,657-663
1wyg A:601-610,665-673,674-686,801-820,821-827
3ml1 A:262-269,294-298,299-311,353-369,667-673
2w3r H:32-42,92-104,105-116,229-250,252-257
2w3r D:32-40,96-104,105-116,231-250,252-257
2w3r B:32-42,92-104,105-116,228-250,252-257
2w3r F:32-42,92-104,105-116,231-250,252-257
3nvy L:602-610,665-673,674-685,799-820,821-827
3nvy C:602-612,661-673,674-686,799-820,821-827
2bgh B:268-278,294-304,309-322,327-342,346-353
2bgh A:268-278,294-304,309-322,327-343,346-353
3nvz C:602-612,661-673,674-685,799-820,821-827
3nvz L:602-610,665-673,674-685,799-820,821-827
3an1 B:601-612,661-673,674-686,799-820,821-827
3an1 A:602-612,661-673,674-686,799-820,821-827
3p56 D:28-37,44-54,56-64,112-132,134-141
3p56 A:28-37,44-54,56-64,112-132,134-142
3nrz C:602-612,661-673,674-685,799-820,821-827
3nrz L:602-612,661-673,674-685,799-820,821-827
2rcu B:241-248,249-256,265-279,310-321,321-331
2rcu A:241-248,249-256,265-279,287-294,323-331
2rcu A:241-248,249-256,265-279,310-321,323-331
2rcu B:241-248,249-256,265-279,287-294,321-331
2i9d A:83-92,95-103,107-122,127-139,142-150
2uvc G:578-584,586-592,592-599,1082-1104,1110-1114
2uvc J:578-584,586-592,592-599,1082-1104,1110-1114
2uvc K:578-584,586-592,592-599,1082-1104,1110-1114
2uvc L:578-584,586-592,592-599,1082-1104,1110-1114
2uvc H:578-584,586-592,592-599,1082-1104,1110-1114
2uvc I:578-584,586-592,592-599,1082-1104,1110-1114
3bdj B:602-610,665-673,674-685,799-820,821-827
3bdj A:602-610,665-673,674-685,799-820,821-827
3hrd E:36-46,96-108,109-121,245-259,261-266
3hrd A:36-46,96-108,109-121,245-259,261-266
3p5j A:28-37,44-54,56-64,113-133,135-143
3p83 D:-2-9,16-24,26-34,77-94,96-102
3p83 E:1-9,16-24,26-34,77-94,96-102
3p83 F:1-9,16-24,26-34,77-94,96-102
2w55 F:32-42,94-104,105-116,231-250,252-257
2w55 B:32-42,92-104,105-116,228-250,252-257
2w55 D:31-40,96-104,105-116,231-250,251-257
2w55 H:32-42,92-104,105-116,228-250,252-257
3sr6 C:601-612,661-673,674-686,801-820,821-827
3sr6 L:601-612,661-673,674-686,801-820,821-827
3fah A:207-217,276-288,289-301,427-441,442-449
2xt6 B:194-199,213-218,223-241,244-251,252-256
3ns1 L:602-610,665-673,674-685,799-820,821-827
3ns1 C:602-610,665-673,674-685,799-820,821-827
2w54 H:32-42,92-104,105-116,229-250,252-257
2w54 B:32-42,92-104,105-116,228-250,252-257
2w54 F:32-42,92-104,105-116,231-250,252-257
2w54 D:32-42,92-104,105-116,229-250,252-257
3etr N:602-612,661-673,674-685,799-820,821-827
3etr C:602-610,665-673,674-685,799-820,821-827
3kio A:28-37,44-54,53-64,113-133,135-143
2w3s D:32-40,96-104,105-116,228-250,252-257
2w3s B:32-42,92-104,105-116,228-250,252-257
2w3s H:32-42,92-104,105-116,229-250,252-257
2w3s F:32-42,92-104,105-116,228-250,252-257
3puf G:28-37,44-54,53-64,112-132,134-142
3puf D:28-37,44-54,53-64,112-132,134-142
3puf M:28-37,44-54,53-64,112-132,134-142
3puf J:28-37,44-54,53-64,112-132,136-142
3puf P:28-37,44-54,53-64,112-132,134-142
3puf A:28-37,44-54,53-64,112-132,134-142
3nvw C:602-610,665-673,674-686,799-820,821-827
3nvw L:602-612,661-673,674-685,799-820,821-827
2deb A:241-248,249-256,265-279,287-294,321-331
2deb B:241-248,249-256,265-279,310-321,321-331
2deb A:241-248,249-256,265-279,310-321,321-331
2deb B:241-248,249-256,265-279,287-294,321-331
3nvv C:602-610,665-673,674-686,799-820,821-827
3nvv L:602-612,661-673,674-685,801-820,821-827
3asm A:91-100,107-117,116-127,171-192,197-203
2fyo A:241-248,249-256,265-279,287-294,323-331
2fyo A:241-248,249-256,265-279,310-321,323-331
2vsq A:273-283,298-308,313-332,335-344,351-356
2fy5 A:183-191,192-202,207-224,253-266,266-275
2dfe A:1-10,16-27,26-37,79-95,100-106
2h4t B:241-248,249-256,265-279,310-321,321-331
2h4t A:241-248,249-256,265-279,287-294,324-331
2h4t B:241-248,249-256,265-279,287-294,321-331
2h4t A:241-248,249-256,265-279,310-321,324-331
3am9 A:602-610,665-673,674-685,799-820,821-827
3am9 B:602-610,665-673,674-685,799-820,821-827
3o5a A:262-269,294-298,299-311,353-369,667-673
2ckj A:603-611,666-674,675-687,800-821,822-828
2ckj C:603-611,666-674,675-687,802-821,822-828
2ckj B:603-611,666-674,675-687,800-821,822-828
2ckj D:603-611,666-674,675-687,802-821,822-828
1yy3 A:26-34,35-43,42-51,314-329,337-341
1yy3 B:26-34,35-43,42-51,314-329,337-341
3l4p A:207-217,276-288,289-301,427-441,443-449
2fy4 A:183-191,192-202,207-224,253-266,266-275
2e3t B:602-612,661-673,674-686,799-820,821-827
2e3t A:602-612,661-673,674-686,801-820,821-827
3fc4 A:207-217,276-288,289-301,427-441,443-449
2fw3 A:241-248,249-256,265-279,287-294,324-331
2fw3 A:241-248,249-256,265-279,310-321,324-331
1zxi E:48-59,112-124,125-137,278-292,293-299
3b9j K:602-612,661-673,674-685,799-820,821-827