1. c.55.3 Ribonuclease H-like consists of one domain of this fold !
Ribonuclease H-like motif 3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
1yvu d1yvua2 A:512-524,526-538,539-559,681-693,696-701
2nub d2nuba2 A:512-524,526-538,542-559,681-691,696-701
2f8t d2f8tb2 B:510-524,526-538,539-559,681-692,696-701
3enb d3enbb1 B:1804-1813,1814-1823,1837-1853,1899-1910,1912-1919
2f8s d2f8sb2 B:510-524,526-538,539-559,681-692,696-701
2f8t d2f8ta2 A:510-524,526-538,539-559,681-693,696-701
2f8s d2f8sa2 A:510-524,526-538,539-559,681-692,696-701
3e9o d3e9oa1 A:1875-1885,1886-1896,1904-1925,1971-1981,1983-1991
3e66 d3e66a1 A:1875-1885,1886-1896,1904-1925,1971-1981,1983-1991
3e9p d3e9pa1 A:1875-1885,1886-1896,1904-1925,1971-1981,1983-1991
3enb d3enba1 A:1803-1813,1814-1824,1832-1853,1899-1909,1911-1919
3e9l d3e9la1 A:1803-1813,1814-1824,1832-1853,1899-1909,1911-1919
3e9p d3e9pb1 B:1875-1885,1886-1896,1904-1924,1971-1981,1983-1991
3e66 d3e66b1 B:1875-1885,1886-1896,1904-1924,1971-1981,1983-1991
2. c.62.1 vWA-like
vWA-like core: 3 layers, a/b/a; mixed beta-sheet of 6 strands, order 321456; strand 3 is antiparallel to the rest
1tye d1tyef2 F:148-157,189-198,199-210,221-233,278-282
3. c.111.1 Activating enzymes of the ubiquitin-like proteins transfer adenylyl group to the C-terminal carboxyl group of the ubiquitin and MoaD/ThiS-related proteins ! the ATP nucleotide-binding site is similar to that of the NAD-binding Rossmann-folds !
Activating enzymes of the ubiquitin-like proteins 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 32145678; strands 6 and 8 are antiparallel to the rest
1yov d1yovd1 D:176-184,185-193,203-210,292-313,320-326
1jwb d1jwbb_ B:148-156,157-165,172-181,193-214,221-229
1jw9 d1jw9b_ B:148-156,157-165,172-181,193-214,221-229
4. d.350.1 YcgL-like
YcgL-like beta(2)-alpha-beta-alpha-beta; 3 layers: a/b/a; antiparallel beta-sheet, order:3124
2h7a d2h7aa1 A:14-22,26-32,41-49,69-81,81-87
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 658 (enumeration index: query977.1195.2176) of S5
3fcu F:148-157,189-198,199-210,221-233,278-282
3fcu D:148-157,189-198,199-210,221-233,278-282
3fcu B:148-157,189-198,199-210,221-233,278-282
3kyc A:151-160,161-169,215-222,299-320,327-334
2ehg A:16-28,29-38,47-67,121-138,143-148
1y8q A:151-160,161-169,215-222,299-320,327-334
1y8q C:151-160,161-169,215-222,299-320,327-334
3nif D:148-157,189-194,199-210,221-233,278-282
3sbt A:1875-1885,1886-1896,1904-1925,1971-1981,1983-1991
3kyd A:151-160,161-169,215-222,299-320,327-334
3ije B:148-157,189-194,199-211,221-233,278-282
3fcs D:148-157,189-198,199-211,221-233,278-282
3fcs B:148-157,189-194,199-211,221-233,278-282
1zfn A:144-153,154-163,180-187,190-211,217-225
3t6p A:302-308,309-315,321-331,592-600,610-615
3dbr B:175-184,185-194,199-208,292-313,320-326
3dbh F:176-184,185-193,199-207,292-313,320-326
2vdm B:148-157,189-198,199-210,221-233,278-282
2vdn B:148-157,189-198,199-210,221-233,278-282
2vdo B:148-157,189-198,199-210,221-233,278-282
1y8r D:151-160,161-169,215-222,299-320,327-334
1y8r A:151-160,161-169,215-222,299-320,327-334
2vdr B:148-157,189-198,199-210,221-233,278-282
2vdq B:148-157,189-194,199-210,221-233,278-282
3cmm C:149-158,159-167,268-276,359-380,387-393
3cmm A:149-158,159-167,268-276,359-380,387-393