1. c.70.1 Nucleoside hydrolase
Nucleoside hydrolase core: 3 layers, a/b/a ; mixed beta-sheet of 8 strands, order 32145687; strand 7 is antiparallel to the rest
1kie d1kieb_ B:12-26,29-37,42-62,232-245,312-327
1kic d1kicb_ B:12-26,29-37,42-62,232-244,312-327
2ff1 d2ff1b1 B:12-26,28-37,42-62,232-244,312-327
1kie d1kiea_ A:12-26,28-37,42-62,232-245,312-327
2ff1 d2ff1a1 A:12-26,28-37,42-62,232-244,312-327
1r4f d1r4fa_ A:12-26,28-37,42-61,232-244,312-327
1r4f d1r4fb_ B:12-26,28-37,42-62,232-244,312-327
1hoz d1hoza_ A:12-26,28-37,42-61,232-244,312-327
1hoz d1hozb_ B:12-26,28-37,42-62,232-244,312-327
1kic d1kica_ A:12-26,28-37,42-62,232-246,312-327
1hp0 d1hp0a_ A:12-26,28-37,42-61,232-247,312-327
1q8f d1q8fa_ A:13-26,29-38,42-58,210-224,294-310
1q8f d1q8fc_ C:13-26,29-38,42-58,210-224,294-310
1hp0 d1hp0b_ B:12-26,28-37,42-62,232-247,312-327
3b9x d3b9xa1 A:13-26,29-38,42-58,210-224,294-310
3b9x d3b9xb1 B:13-26,29-38,42-58,210-224,294-310
1q8f d1q8fb_ B:13-26,29-38,42-58,210-232,294-310
1q8f d1q8fd_ D:13-26,29-38,42-58,210-232,294-310
3b9x d3b9xd1 D:13-26,29-38,42-58,210-224,294-311
2mas d2masb_ B:12-26,28-37,41-57,212-234,296-312
2mas d2masa_ A:12-26,28-37,41-57,212-234,296-312
2mas d2masc_ C:12-26,28-37,41-57,212-234,296-312
2mas d2masd_ D:12-26,28-37,41-57,212-234,296-312
1ezr d1ezrc_ C:12-26,28-37,41-57,212-229,295-311
1ezr d1ezra_ A:12-26,28-37,41-57,212-229,295-311
1ezr d1ezrd_ D:12-26,28-37,41-57,212-229,295-311
1mas d1masb_ B:12-26,28-37,41-57,212-234,296-312
1ezr d1ezrb_ B:12-26,28-37,41-57,212-229,295-311
1mas d1masa_ A:12-26,28-37,41-57,212-234,296-312
3b9x d3b9xc1 C:13-26,29-38,42-58,210-218,294-309
2ff2 d2ff2b1 B:12-26,28-37,42-62,232-253,312-327
2ff2 d2ff2a1 A:12-26,28-37,42-62,232-253,312-327
2. c.120.1 PIN domain-like
PIN domain-like 3 layers, a/b/a; core: parallel beta-sheet of 5 strands, order 32145
1rxw d1rxwa2 A:54-72,73-82,127-142,296-309,311-323
1rxv d1rxva2 A:54-72,73-82,127-142,296-309,311-323
1rxv d1rxvb2 B:54-72,72-82,127-142,296-309,311-323
1ul1 d1ul1z2 Z:60-78,78-88,136-149,302-315,317-333
1a77 d1a77a2 A:54-72,72-81,128-143,282-295,297-316
1tau d1taua2 A:40-58,60-67,89-107,265-277,278-290
1ul1 d1ul1x2 X:60-78,78-88,136-149,302-315,317-334
1a76 d1a76a2 A:54-72,72-80,128-143,282-295,297-316
1ul1 d1ul1y2 Y:60-78,78-88,134-149,302-315,317-335
1mc8 d1mc8a2 A:54-72,72-82,128-143,296-309,311-329
1mc8 d1mc8b2 B:54-72,72-82,128-143,296-309,311-331
1taq d1taqa2 A:40-58,60-66,89-107,265-277,281-290
1b43 d1b43a2 A:53-71,71-81,123-142,295-308,310-333
1b43 d1b43b2 B:53-71,71-81,123-142,295-308,310-333
2ihn d2ihna2 A:39-62,64-70,100-119,282-294,295-302
1tfr d1tfra2 A:39-62,64-70,100-119,282-294,295-302
3. d.188.1 Prokaryotic ribosomal protein L17 some topological similarity to ribosomal protein L22 !
Prokaryotic ribosomal protein L17 alpha-beta-alpha(3)-beta(2); 2 layers: alpha/beta;
3df2 d3df2n1 N:13-32,32-37,37-58,59-71,72-82
3df4 d3df4n1 N:13-32,32-37,37-58,59-71,72-82
2qam d2qamn1 N:13-32,32-37,37-58,59-71,72-82
2qao d2qaon1 N:13-32,32-37,37-58,59-71,72-82
2z4n d2z4nn1 N:13-32,32-37,37-58,59-71,72-82
2z4l d2z4ln1 N:13-32,32-37,37-58,59-71,72-82
2qba d2qban1 N:13-32,32-37,37-58,59-71,72-84
2qbc d2qbcn1 N:13-32,32-37,37-58,59-71,72-84
2qbk d2qbkn1 N:13-32,32-37,37-58,59-71,72-84
2qbi d2qbin1 N:13-32,32-37,37-58,59-71,72-84
2qov d2qovn1 N:13-32,32-37,37-58,59-71,72-88
2qox d2qoxn1 N:13-32,32-37,37-58,59-71,72-88
1yl3 d1yl301 0:14-32,32-38,37-58,59-71,72-88
4. e.72.1 SSO1389-like
SSO1389-like 2 domains; d1: [alpha/beta, central parallel beta-sheet of 6 strands, order 321456, Rossmann-like]; d2: [alpha+beta, cluster of helices and a small 4-stranded beta-sheet]
2i71 d2i71a1 A:98-118,120-127,129-153,185-200,266-283
2i71 d2i71b1 B:98-118,120-127,129-153,185-200,266-283
5. d.334.1 IlvD/EDD N-terminal domain-like
IlvD/EDD N-terminal domain-like contains a large cluster of helices and a mixed beta-sheet of 4 strands; order 2134, strands 3 and 4 are parallel
2gp4 d2gp4a2 A:154-169,172-176,231-238,283-298,300-315
2gp4 d2gp4b2 B:156-169,172-176,231-238,283-298,300-315
6. c.1.20 tRNA-guanine transglycosylase
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
1j2b d1j2bb2 B:205-220,225-229,233-244,327-340,339-353
1j2b d1j2ba2 A:205-220,225-229,233-244,327-340,339-353
1it8 d1it8a1 A:205-220,225-229,233-244,327-340,339-353
1iq8 d1iq8a1 A:205-220,225-229,233-244,327-340,339-353
1it8 d1it8b1 B:205-220,225-229,233-244,327-340,339-353
1iq8 d1iq8b1 B:205-220,225-229,233-244,327-340,339-353
1it7 d1it7a1 A:205-221,225-229,233-244,327-340,339-353
1it7 d1it7b1 B:205-220,224-229,233-244,327-340,339-353
1it8 d1it8a1 A:233-244,246-251,296-326,327-340,339-353
1it8 d1it8b1 B:233-244,246-251,296-326,327-340,339-353
1it7 d1it7a1 A:233-244,246-251,296-326,327-340,339-353
1it7 d1it7b1 B:233-244,246-251,296-326,327-340,339-353
1iq8 d1iq8a1 A:233-244,246-251,296-326,327-340,339-353
1iq8 d1iq8b1 B:233-244,246-251,296-326,327-340,339-353
7. c.1.19 Cobalamin (vitamin B12)-dependent enzymes
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
1egm d1egml_ L:150-165,167-172,178-195,404-427,432-442
1mmf d1mmfa_ A:151-166,168-173,179-196,405-428,433-443
1uc5 d1uc5l_ L:150-165,167-172,178-195,404-427,432-442
1dio d1diol_ L:150-165,167-172,178-195,404-427,432-442
1uc5 d1uc5a_ A:150-165,167-172,178-195,404-427,432-442
1mmf d1mmfl_ L:151-166,168-173,179-196,405-428,433-443
1eex d1eexl_ L:150-165,167-172,178-195,404-427,432-442
1uc4 d1uc4l_ L:150-165,167-172,178-195,404-427,432-442
1uc4 d1uc4a_ A:150-165,167-172,178-195,404-427,432-442
1egv d1egvl_ L:150-165,167-172,178-195,404-427,432-442
1egm d1egma_ A:150-165,167-172,178-195,404-427,432-442
1iwb d1iwbl_ L:150-165,167-172,178-195,404-427,432-442
1iwp d1iwpl_ L:151-166,168-173,179-196,405-428,433-443
1egv d1egva_ A:150-165,167-172,178-195,404-427,432-442
1eex d1eexa_ A:150-165,167-172,178-195,404-427,432-442
1iwp d1iwpa_ A:151-166,168-173,179-196,405-428,433-443
1dio d1dioa_ A:150-165,167-172,178-195,404-427,432-442
1iwb d1iwba_ A:150-165,167-172,178-195,404-427,432-442
8. c.45.1 (Phosphotyrosine protein) phosphatases II share with the family I the common active site structure with a circularly permuted topology !
(Phosphotyrosine protein) phosphatases II core: 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 1423
1zsq d1zsqa2 A:387-410,411-418,422-437,441-456,478-495
1lw3 d1lw3a2 A:387-410,411-418,422-437,441-456,478-495
1zvr d1zvra2 A:387-410,411-418,422-437,441-456,478-495
1m7r d1m7ra2 A:387-410,411-418,422-437,441-456,478-495
1r6h d1r6ha_ A:80-99,100-107,112-126,127-140,144-157
1m7r d1m7rb2 B:387-410,411-418,422-437,441-456,478-495
1xri d1xria_ A:127-141,145-151,152-169,171-184,188-198
2q47 d2q47a1 A:127-141,145-151,152-169,171-184,188-198
1j4x d1j4xa_ A:97-116,119-124,126-144,146-159,163-181
1mkp d1mkpa_ A:267-286,288-294,296-313,315-328,333-347
1ohd d1ohda1 A:93-110,116-124,125-145,147-159,178-193
9. c.66.1 S-adenosyl-L-methionine-dependent methyltransferases
S-adenosyl-L-methionine-dependent methyltransferases core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest
1o9g d1o9ga_ A:63-74,78-85,86-102,101-120,121-142
1o9h d1o9ha_ A:63-74,76-85,86-102,101-120,121-142
2dpm d2dpma_ A:47-54,56-63,64-78,77-92,155-170
10. c.87.1 UDP-Glycosyltransferase/glycogen phosphorylase
UDP-Glycosyltransferase/glycogen phosphorylase consists of two non-similar domains with 3 layers (a/b/a) each ! domain 1: parallel beta-sheet of 7 strands, order 3214567 ! domain 2: parallel beta-sheet of 6 strands, order 321456
2ex1 d2ex1a1 A:35-50,56-62,67-75,234-246,336-344
2iiq d2iiqa1 A:35-50,56-62,67-75,234-246,336-344
1pyg d1pyga_ A:575-594,600-609,613-633,758-769,772-794
2ecp d2ecpb_ B:575-594,600-607,613-633,735-748,772-794
2ecp d2ecpa_ A:575-594,600-607,613-633,735-748,772-794
1e4o d1e4ob_ B:540-559,565-574,578-598,700-713,739-761
1e4o d1e4oa_ A:540-559,565-574,578-598,700-713,739-761
1exv d1exvb_ B:575-594,600-609,613-633,735-748,772-794
1exv d1exva_ A:575-594,600-609,613-633,735-748,772-794
1fc0 d1fc0a_ A:575-594,600-609,613-633,735-748,772-794
1fc0 d1fc0b_ B:1575-1594,1600-1609,1613-1633,1735-1748,1772-1794
2asv d2asva1 A:540-559,565-574,578-598,700-713,739-761
2asv d2asvb1 B:540-559,565-574,578-598,700-713,739-761
1l5r d1l5rb_ B:575-594,600-609,613-633,735-748,772-794
1l5s d1l5sa_ A:575-594,600-609,613-633,735-748,772-794
1l5r d1l5ra_ A:575-594,600-609,613-633,735-748,772-794
1em6 d1em6b_ B:575-594,600-609,613-634,735-748,772-794
1em6 d1em6a_ A:575-594,600-609,613-634,735-748,772-794
2qll d2qlla1 A:575-594,600-609,613-634,735-748,772-794
1l5w d1l5wa_ A:540-559,565-574,578-598,700-713,739-761
1l5w d1l5wb_ B:540-559,565-574,578-598,700-713,739-761
1l5v d1l5va_ A:540-559,565-574,578-598,700-713,739-761
2av6 d2av6a1 A:540-559,565-574,578-598,700-713,739-761
1qm5 d1qm5a_ A:540-559,565-574,578-598,700-713,739-761
1qm5 d1qm5b_ B:540-559,565-574,578-598,700-713,739-761
1l5v d1l5vb_ B:540-559,565-574,578-598,700-713,739-761
2av6 d2av6b1 B:540-559,565-574,578-598,700-713,739-761
2aw3 d2aw3a1 A:540-559,565-574,578-598,700-713,739-761
1l6i d1l6ib_ B:540-559,565-574,578-598,700-713,739-761
1l6i d1l6ia_ A:540-559,565-574,578-598,700-713,739-761
1fa9 d1fa9a_ A:575-593,600-609,613-634,735-748,772-794
2aw3 d2aw3b1 B:540-559,565-574,578-598,700-713,739-761
2azd d2azdb1 B:540-559,565-574,578-598,700-713,739-761
2azd d2azda1 A:540-559,565-574,578-598,700-713,739-761
2iei d2ieib1 B:575-594,600-609,613-633,735-748,772-794
1pyg d1pygc_ C:575-594,600-609,613-633,735-748,772-794
1pyg d1pyga_ A:575-594,600-609,613-633,735-748,772-794
11. c.19.1 FabD/lysophospholipase-like
FabD/lysophospholipase-like core: 3 layers, a/b/a; mixed beta-sheet of 6 strands, order 432156; strand 4 is antiparallel to the rest
1cjy d1cjya2 A:197-216,222-227,228-240,247-262,686-705
1cjy d1cjyb2 B:1197-1216,1222-1228,1228-1240,1247-1262,1686-1705
12. c.134.1 LmbE-like
LmbE-like 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest; topological similarity to SAM-dependent methyltransferases
1uan d1uanb_ B:10-19,31-38,47-63,159-174,186-206
1uan d1uana_ A:10-19,31-38,47-63,159-174,187-206
1uan d1uanb_ B:18-29,31-38,47-63,159-174,186-206
1uan d1uana_ A:18-29,31-38,47-63,159-174,187-206
13. c.37.1 P-loop containing nucleoside triphosphate hydrolases division into families based on beta-sheet topologies !
P-loop containing nucleoside triphosphate hydrolases 3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
1yr6 d1yr6a1 A:138-157,159-166,171-185,184-196,197-208
2oxr d2oxra1 A:138-157,158-166,171-185,184-196,197-208
1yr8 d1yr8a1 A:138-157,158-166,171-185,184-196,197-215
14. a.110.1 Aldehyde ferredoxin oxidoreductase, C-terminal domains
Aldehyde ferredoxin oxidoreductase, C-terminal domains multihelical; consists of two all-alpha domains
1b4n d1b4nd1 D:33-47,86-95,518-542,596-604,605-617
1b25 d1b25d1 D:33-47,86-95,518-542,596-604,605-617
1b25 d1b25b1 B:33-47,86-95,518-542,596-604,605-617
1b25 d1b25c1 C:33-47,86-95,518-542,596-604,605-616
1b4n d1b4nb1 B:33-47,86-95,518-542,596-604,605-617
1b4n d1b4na1 A:33-47,87-95,518-542,596-604,605-617
1b25 d1b25a1 A:33-47,87-95,518-542,596-604,605-616
1b4n d1b4nc1 C:33-47,87-95,518-542,596-604,605-617
15. i.7.1 Reovirus components
Reovirus components
1ej6 d1ej6b_ B:588-601,603-609,622-640,759-778,805-815
16. c.1.14 RuBisCo, C-terminal domain
TIM beta/alpha-barrel contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678 ! the first seven superfamilies have similar phosphate-binding sites
9rub d9ruba1 A:372-384,387-392,402-420,422-431,440-449
9rub d9rubb1 B:372-384,387-392,401-420,422-431,440-449
1rus d1rusb1 B:372-384,387-392,402-420,422-431,440-449
2rus d2rusb1 B:372-384,387-395,402-420,422-431,440-449
5rub d5rubb1 B:372-384,387-395,402-420,422-431,440-449
2rus d2rusb1 B:372-384,387-395,402-420,430-441,440-449
1rus d1rusb1 B:372-384,387-392,402-420,430-441,440-449
9rub d9ruba1 A:372-384,387-392,402-420,430-441,440-449
5rub d5rubb1 B:372-384,387-395,402-420,430-441,440-449
9rub d9rubb1 B:372-384,387-392,401-420,430-441,440-449
17. e.28.1 Reovirus inner layer core protein p3
Reovirus inner layer core protein p3 large protein without apparent domain division; has a number of all-alpha regions and one all beta domain near the C-end
1uf2 d1uf2a_ A:349-367,369-375,384-399,552-569,594-609
1uf2 d1uf2b_ B:349-367,369-375,384-399,552-569,594-614
18. c.2.1 NAD(P)-binding Rossmann-fold domains
NAD(P)-binding Rossmann-fold domains core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456 ! The nucleotide-binding modes of this and the next two folds/superfamilies are similar
1obb d1obbb1 B:13-28,32-39,41-60,321-330,332-348
19. a.123.1 Nuclear receptor ligand-binding domain
Nuclear receptor ligand-binding domain multihelical; 3 layers or orthogonally packed helices
1ovl d1ovla_ A:399-425,467-471,479-497,550-580,585-597
2qmv d2qmva1 A:276-304,344-348,362-378,430-460,466-475
1nax d1naxa_ A:265-291,333-337,346-364,416-447,452-460
1nav d1nava_ A:211-237,279-283,292-310,362-393,398-406
1ovl d1ovle_ E:398-425,467-471,479-497,548-580,585-596
1q4x d1q4xa_ A:265-291,333-337,346-364,416-447,452-461
1n46 d1n46b_ B:265-291,333-337,346-364,416-447,452-460
1ovl d1ovlc_ C:398-425,467-471,479-497,549-580,585-597
2r40 d2r40d1 D:333-358,400-404,413-431,480-515,519-527
2lbd d2lbda_ A:223-249,291-295,304-322,372-404,409-418
1r1k d1r1kd_ D:331-358,400-404,413-431,480-515,519-527
2qw4 d2qw4c1 C:68-94,136-140,148-166,220-249,254-263
1exx d1exxa_ A:223-249,291-295,304-322,372-404,409-417
1fd0 d1fd0a_ A:223-249,291-295,304-322,372-404,409-417
3lbd d3lbda_ A:223-249,291-295,304-322,372-405,409-418
4lbd d4lbda_ A:223-249,291-295,304-322,372-405,409-418
2qw4 d2qw4b1 B:68-93,136-140,148-166,218-249,254-264
1exa d1exaa_ A:223-249,291-295,304-322,372-405,409-417
2qw4 d2qw4d1 D:68-94,136-140,148-166,219-249,254-264
1fcz d1fcza_ A:223-249,291-295,304-322,372-405,409-417
1xv9 d1xv9d_ D:153-180,221-225,235-253,307-334,340-348
1xv9 d1xv9b_ B:153-180,221-225,235-253,307-334,340-348
2qw4 d2qw4a1 A:68-94,136-140,148-166,218-249,254-264
1pq9 d1pq9b_ B:261-290,332-336,346-364,414-446,450-458
1pq6 d1pq6d_ D:263-290,332-336,346-364,414-444,450-459
1pqc d1pqcb_ B:261-290,332-336,346-364,414-446,450-458
20. c.150.1 EreA/ChaN-like there are four conserved residues in the putative active site: two His and two Glu
EreA/ChaN-like Core: 3 layers: a/b/a; parallel beta-sheet of 5 strands, order:51423;
2ebf d2ebfx2 X:917-928,937-943,945-959,963-975,980-993
2ebh d2ebhx2 X:917-928,937-943,945-959,963-975,980-993
2ec5 d2ec5a2 A:917-928,937-943,945-959,963-975,980-993
2ec5 d2ec5b2 B:917-928,937-943,945-959,963-975,980-993
21. a.104.1 Cytochrome P450
Cytochrome P450 multihelical
1ue8 d1ue8a_ A:93-108,110-115,196-230,230-239,317-339
1phd d1phda_ A:127-146,146-151,234-268,267-278,357-379
4cp4 d4cp4a_ A:127-146,146-151,234-268,267-278,357-379
5cpp d5cppa_ A:127-146,146-151,234-268,267-278,357-379
2h7q d2h7qa1 A:127-146,146-151,234-268,267-278,357-379
1phg d1phga_ A:127-146,146-151,234-268,267-278,357-379
1phc d1phca_ A:127-146,146-151,234-268,267-278,357-379
1j51 d1j51d_ D:127-146,146-151,234-268,267-278,357-379
1phf d1phfa_ A:127-146,146-151,234-268,267-278,357-379
6cp4 d6cp4a_ A:127-146,146-151,234-268,267-278,357-379
8cpp d8cppa_ A:127-146,146-151,234-268,267-278,357-379
1gek d1geka_ A:127-146,146-151,234-268,267-278,357-379
5cp4 d5cp4a_ A:127-146,146-151,234-268,267-278,357-379
7cpp d7cppa_ A:127-146,146-151,234-268,267-278,357-379
2cpp d2cppa_ A:127-146,146-151,234-268,267-278,357-379
1pha d1phaa_ A:127-146,146-151,234-268,267-278,357-379
6cpp d6cppa_ A:127-146,146-151,234-268,267-278,357-379
1phb d1phba_ A:127-146,146-151,234-268,267-278,357-379
2cp4 d2cp4a_ A:127-146,146-151,234-268,267-278,357-379
3cpp d3cppa_ A:127-146,146-151,234-268,267-278,357-379
1noo d1nooa_ A:127-146,146-151,234-268,267-278,357-379
1cp4 d1cp4a_ A:127-146,146-151,234-268,267-278,357-379
1phe d1phea_ A:127-146,146-151,234-268,267-278,357-379
1re9 d1re9a_ A:117-136,136-141,224-258,257-268,347-369
1j51 d1j51b_ B:127-146,146-151,234-268,267-278,357-379
1mpw d1mpwb_ B:127-146,146-151,234-268,267-278,357-379
4cpp d4cppa_ A:127-146,146-151,234-268,267-278,357-379
3cp4 d3cp4a_ A:127-146,146-151,234-268,267-278,357-379
2zaw d2zawa1 A:127-146,146-151,234-268,267-278,357-379
1gem d1gema_ A:127-146,146-151,234-268,267-278,357-379
2zax d2zaxa1 A:127-146,146-151,234-268,267-278,357-379
1iwk d1iwka_ A:127-146,146-151,234-268,267-278,357-379
1iwj d1iwja_ A:127-146,146-151,234-268,267-278,357-379
2fe6 d2fe6a1 A:127-146,146-151,234-268,267-278,357-379
1rf9 d1rf9a_ A:127-146,146-151,234-268,267-278,357-379
1geb d1geba_ A:127-146,146-151,234-268,267-278,357-379
1gjm d1gjma_ A:127-146,146-151,234-268,267-278,357-379
1iwi d1iwia_ A:127-146,146-151,234-268,267-278,357-379
1k2o d1k2oa_ A:127-146,146-151,234-268,267-278,357-379
1t85 d1t85a_ A:127-146,146-151,234-268,267-278,357-379
1qmq d1qmqa_ A:127-146,146-151,234-268,267-278,357-379
22. d.144.1 Protein kinase-like (PK-like) shares functional and structural similarities with the ATP-grasp fold and PIPK !
Protein kinase-like (PK-like) consists of two alpha+beta domains, C-terminal domain is mostly alpha helical
1j7l d1j7la_ A:135-150,211-216,216-233,234-246,250-264
1j7l d1j7lb_ B:135-150,211-216,216-233,234-246,250-264
1j7u d1j7ua_ A:135-150,211-216,216-233,234-246,250-264
23. c.14.1 ClpP/crotonase
ClpP/crotonase core: 4 turns of (beta-beta-alpha)n superhelix
1rjm d1rjma_ A:135-146,148-155,161-170,254-271,270-285
1q52 d1q52i_ I:135-146,148-155,161-170,254-271,270-289
1q52 d1q52k_ K:135-146,148-155,161-170,254-271,270-289
1q52 d1q52d_ D:135-146,148-155,161-170,254-271,270-289
1rjn d1rjnc_ C:135-146,148-155,161-170,254-271,270-285
1rjm d1rjmb_ B:135-146,148-155,161-170,254-271,270-285
1q52 d1q52e_ E:135-146,148-155,161-170,254-271,270-289
1q52 d1q52h_ H:135-146,148-155,161-170,254-271,270-289
1rjn d1rjnb_ B:135-146,148-155,161-170,254-271,270-289
1q52 d1q52f_ F:135-146,148-155,161-170,254-271,270-289
1q52 d1q52g_ G:135-146,148-155,161-170,254-271,270-289
1q52 d1q52j_ J:135-146,148-155,161-170,254-271,270-289
1q52 d1q52a_ A:135-146,148-155,161-170,254-271,270-289
1rjm d1rjmc_ C:135-146,148-155,161-170,254-271,270-284
1q52 d1q52l_ L:135-146,148-155,161-170,254-271,270-289
1q52 d1q52c_ C:135-146,148-155,161-170,254-271,270-289
1rjn d1rjna_ A:134-146,148-155,161-170,254-271,270-289
1q51 d1q51l_ L:134-146,148-155,161-170,254-271,270-289
1q51 d1q51e_ E:134-146,148-155,161-170,254-271,270-289
1q51 d1q51g_ G:134-146,148-155,161-170,254-271,270-289
1q51 d1q51j_ J:134-146,148-155,161-170,254-271,270-289
1q51 d1q51b_ B:134-146,148-155,161-170,254-271,270-289
1q51 d1q51k_ K:134-146,148-155,161-170,254-271,270-289
1q51 d1q51a_ A:134-146,148-155,161-170,254-271,270-289
1q52 d1q52b_ B:134-146,148-155,161-170,254-271,270-289
1q51 d1q51f_ F:134-146,148-155,161-170,254-271,270-289
1q51 d1q51h_ H:134-146,148-155,161-170,254-271,270-289
1q51 d1q51c_ C:134-146,148-155,161-170,254-271,270-289
1q51 d1q51d_ D:134-146,148-155,161-170,254-271,270-289
1q51 d1q51i_ I:134-146,148-155,161-170,254-271,270-289
24. c.94.1 Periplasmic binding protein-like II Similar in architecture to the superfamily I but partly differs in topology !
Periplasmic binding protein-like II consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication ! mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
1mh4 d1mh4a2 A:42-54,58-64,63-74,333-353,478-493
25. d.128.1 Glutamine synthetase/guanido kinase
Glutamine synthetase/guanido kinase duplication: common core consists of two beta-alpha-beta2-alpha repeats
1r8g d1r8ga_ A:68-91,133-141,143-158,246-268,326-341
1tt4 d1tt4a_ A:68-91,133-141,143-158,246-268,325-341
1tt4 d1tt4b_ B:68-91,133-141,143-158,246-268,325-341
26. h.4.2 Clostridium neurotoxins, "coiled-coil" domain
Antiparallel coiled-coil this is not a true fold; contains at least two very long antiparallel helices
2np0 d2np0a4 A:535-545,566-570,573-582,585-606,673-741
1g9c d1g9ca4 A:535-545,566-570,573-582,585-609,673-741
1s0f d1s0fa4 A:535-545,566-570,573-582,585-609,673-741
1s0e d1s0ea4 A:535-545,566-570,573-582,585-609,673-741
1s0c d1s0ca4 A:535-545,566-570,573-582,585-609,673-741
1s0d d1s0da4 A:535-545,566-570,573-582,585-609,673-741
1epw d1epwa4 A:535-545,566-570,573-582,585-609,673-741
1s0b d1s0ba4 A:535-545,566-570,573-582,585-609,673-741
1g9b d1g9ba4 A:535-545,566-570,573-582,585-609,673-741
1g9a d1g9aa4 A:535-545,566-570,573-582,585-609,673-741
1i1e d1i1ea4 A:535-545,566-570,573-582,585-609,673-741
1f31 d1f31a4 A:535-545,566-570,573-582,585-609,674-741
1s0g d1s0ga4 A:535-545,566-570,573-582,585-609,673-741
1g9d d1g9da4 A:535-545,566-570,573-582,585-609,673-741
List of motif hits that are not present in SCOP but are found in PDB for pattern ID: 1067 (enumeration index: query98.2390) of S5
3l0e A:260-290,332-336,346-364,414-446,450-458
3dfk A:16-25,36-44,70-87,215-230,229-238
3dfk A:16-25,36-44,70-87,215-230,242-256
2wgp A:85-104,106-112,116-131,133-146,151-167
2wgp B:85-104,106-112,116-131,133-146,151-167
2izo A:51-69,69-77,125-140,300-313,315-339
3nc6 B:104-123,123-128,219-253,252-263,355-375
3nc6 A:104-123,123-128,219-253,252-263,355-375
3lx8 A:64-77,80-88,90-105,192-206,207-215
3nc5 B:104-123,123-128,219-253,252-263,355-375
3nc5 A:104-123,123-128,219-253,252-263,355-375
2zo4 A:75-86,87-92,95-106,105-121,132-142
2x9p A:110-136,137-142,220-254,253-264,346-368
3sqx A:351-371,374-380,382-402,522-545,547-564
2zwi B:48-63,66-73,79-87,243-255,340-348
2zwi A:48-63,66-73,79-87,243-255,340-348
2zbx A:115-141,142-147,230-264,273-289,357-377
3rmt D:236-250,252-262,267-277,309-317,319-330
3rmt C:236-251,252-263,267-277,309-317,319-330
3c5i A:159-176,238-244,243-257,276-292,300-334
3c5i C:159-175,238-243,243-257,276-293,300-334
3c5i B:159-176,238-244,243-257,276-293,300-334
2wib A:71-84,87-95,97-112,197-211,212-220
2wib B:72-84,87-95,97-112,197-211,212-220
3i61 A:351-371,374-380,382-402,522-545,547-564
3epx B:12-26,29-37,42-62,232-246,312-327
3epx A:12-26,29-37,42-62,232-248,312-327
2i6i A:74-89,91-97,98-116,118-131,136-150
3t8a C:134-146,148-155,161-170,254-271,270-290
3t8a A:135-146,148-155,161-170,254-271,270-289
3kz4 B:370-389,391-396,400-415,503-517,539-561
2z4t A:124-143,145-152,157-165,327-339,430-438
2pq5 C:111-130,133-138,143-158,160-173,177-192
2pq5 B:111-130,133-138,143-158,160-173,177-192
2pq5 D:111-130,133-138,143-158,160-173,177-193
2pq5 A:111-130,133-138,143-158,160-173,177-193
2dxp A:74-89,91-97,98-116,118-131,136-150
2esb A:78-97,99-105,109-124,126-139,144-160
3juv A:164-187,188-193,297-331,330-346,451-471
3cy1 A:106-128,130-134,219-253,252-263,347-367
2qcj A:202-215,222-227,229-251,257-270,275-290
2j16 A:118-133,135-141,143-160,162-175,180-196
2j16 B:114-133,135-141,142-160,162-175,180-196
1y4c A:42-54,58-64,63-74,333-353,630-652
3a1s B:80-93,96-103,106-121,212-223,224-235
3a1s A:80-93,96-103,106-121,212-223,224-235
2x5w A:143-162,162-167,254-288,287-298,377-399
3e3n D:575-594,600-609,613-633,758-769,772-794
3e3n A:575-594,600-609,613-633,735-748,772-794
3e3n G:575-594,600-609,613-633,758-769,772-794
3e3n D:575-594,600-609,613-633,735-748,772-794
3e3n G:575-594,600-609,613-633,735-748,772-794
3k1q G:5-20,23-27,73-90,206-225,229-239
3k1q L:5-20,23-27,73-90,206-225,229-239
3k1q C:524-538,540-545,559-577,695-715,741-750
3k1q M:5-20,23-27,73-90,206-225,229-239
3k1q H:5-20,23-27,73-90,206-225,229-239
3k1q R:5-20,23-27,73-90,206-225,229-239
3k1q S:5-20,23-27,73-90,206-225,229-239
3k1q N:5-20,23-27,73-90,206-225,229-239
3k1q F:5-20,23-27,73-90,206-225,229-239
3k1q T:5-20,23-27,73-90,206-225,229-239
2wia A:71-84,87-95,97-112,197-211,212-220
3abb A:114-140,141-146,229-263,262-272,355-375
2img A:70-88,90-96,97-115,117-130,135-150
3cxz A:106-128,130-134,219-253,252-263,347-367
2c4m D:529-548,554-563,567-588,688-701,731-754
2c4m C:529-548,554-563,567-588,688-701,731-754
2c4m A:529-548,554-563,567-588,688-701,731-754
2c4m B:529-548,554-563,567-588,688-701,731-754
3t88 D:106-118,120-127,133-142,225-242,241-261
3t88 A:106-118,120-127,133-142,225-242,241-261
3t88 E:106-118,120-127,133-142,225-242,241-261
3t88 B:106-118,120-127,133-142,225-242,241-261
3t88 C:106-118,120-127,133-142,225-242,241-261
3t88 F:106-118,120-127,133-142,225-242,241-261
3awf B:336-355,357-364,367-382,386-399,412-430
3awf C:336-355,357-363,368-382,386-399,412-430
3awf A:336-355,357-363,368-382,386-399,412-430
3fwf B:127-146,146-151,234-268,267-278,359-379
3fwf A:127-146,146-151,234-268,267-278,359-379
3i92 C:71-84,87-95,97-112,197-211,212-220
3mdj C:395-414,530-539,632-650,653-667,669-691
3mdj A:395-414,530-539,632-650,653-667,669-691
2bkk A:135-148,211-217,216-233,234-246,250-264
3cy0 A:106-128,130-134,219-253,252-263,347-367
2wiv A:257-279,284-288,377-411,410-421,503-524
2wiv B:257-279,284-288,377-411,410-421,503-524
3cli B:178-205,206-210,306-341,341-360,473-493
2w2d B:549-558,580-584,587-596,599-620,687-755
2w2d D:549-559,567-571,587-594,609-620,687-752
2w2d D:549-559,580-584,587-594,609-620,687-752
3i20 N:13-32,32-37,37-58,59-71,72-83
2rcm B:178-205,206-210,306-341,341-360,473-493
3gzu B:370-389,391-395,400-415,503-517,539-561
2j4a A:265-291,333-337,346-364,416-447,452-460
3g5f A:106-128,130-134,219-253,252-263,347-367
3ory A:58-76,76-85,132-147,304-317,319-339
2x9l A:16-25,36-44,70-87,215-230,229-238
2x9l A:16-25,36-44,70-87,215-230,242-256
3cxb A:61-77,157-169,178-193,257-270,282-304
2gwc B:173-196,244-250,253-268,393-411,471-486
2gwc H:173-196,244-250,253-268,393-411,471-486
2gwc D:173-196,244-250,253-268,393-411,471-486
2gwc A:173-196,244-250,253-268,393-411,471-486
2gwc E:173-196,244-250,253-268,393-411,471-486
2gwc C:173-196,244-250,253-268,393-411,471-486
2gwc G:173-196,244-250,253-268,393-411,471-486
2gwc F:173-196,244-250,253-268,393-411,471-486
3k6p A:319-343,385-389,398-416,468-497,505-518
3hw2 A:61-76,157-168,178-193,257-269,282-304
2gg4 A:244-259,260-270,275-285,317-325,327-338
2oud A:382-401,403-408,410-428,430-443,448-465
3b9g A:12-26,28-37,42-62,232-245,302-317
3b9g B:12-26,29-37,42-62,232-246,302-317
1yoe A:12-26,27-36,41-57,210-225,295-311
3a1u A:80-93,96-103,106-121,212-223,224-235
3fwi A:127-146,146-151,234-268,267-278,359-379
2gwo D:111-130,133-138,143-158,160-173,177-196
2gwo B:111-130,133-138,143-158,160-173,177-193
2gwo A:111-130,133-138,143-158,160-173,177-193
3nc7 B:104-123,123-128,219-253,252-263,355-375
3nc7 A:104-123,123-128,219-253,252-263,355-375
3g5i B:12-26,27-36,41-57,210-224,295-311
3g5i A:12-26,27-36,41-57,210-224,295-311
3g5i C:12-26,27-36,41-57,210-222,295-311
3g5i D:12-26,27-36,41-57,210-228,295-311
3b1y A:64-77,80-88,90-105,195-206,207-215
3bdz A:117-135,136-141,224-258,257-268,349-369
3bdz B:117-135,136-141,224-258,257-268,349-369
3b1z A:64-77,80-88,90-105,192-206,207-215
3m4u B:205-219,224-230,231-252,255-271,276-292
3m4u A:205-219,224-230,231-252,255-271,276-292
2xn8 A:143-162,162-167,254-288,287-298,377-399
3cxx A:106-128,130-134,219-253,252-263,347-367
3fal B:244-273,316-320,330-348,398-430,434-443
3p6v A:127-146,146-151,234-268,267-278,357-379
2xbk A:117-136,137-142,220-254,253-264,346-368
3b1x A:64-77,80-87,90-105,192-206,207-215
3b1x B:64-77,80-88,90-105,195-206,207-215
2zui A:127-146,146-151,234-268,267-278,357-379
3oat N:13-32,32-37,37-58,59-71,72-83
2ii6 A:35-50,56-62,67-75,234-246,336-344
3n09 B:370-389,391-395,400-415,503-517,539-561
3sqw A:351-371,374-380,382-402,522-545,547-564
3oi3 R:13-32,32-37,37-58,59-71,72-88
3nc3 B:104-123,123-128,219-253,252-263,355-375
3nc3 A:104-123,123-128,219-253,252-263,355-375
3b4x A:93-108,110-115,196-230,230-239,317-338
2i6j A:74-89,91-97,101-116,118-131,136-150
3dfm A:16-25,36-44,70-87,215-230,229-238
3dfm A:16-25,36-44,70-87,215-230,242-256
3dff A:16-25,36-44,70-87,215-230,229-238
3dff A:16-25,36-44,70-87,215-230,242-256
2ixd A:12-21,33-40,49-65,161-176,193-210
2ixd B:12-21,33-40,49-65,161-176,193-210
2ixd B:20-31,33-40,49-65,161-176,193-210
2ixd A:20-31,33-40,49-65,161-176,193-210
3i8x C:71-84,87-95,97-112,197-211,212-220
3awg B:336-355,357-363,365-382,386-399,412-430
3awg C:336-355,357-363,366-382,386-399,412-430
3awg A:336-355,357-363,365-382,386-399,412-430
3dsk B:178-205,206-210,306-341,341-360,473-493
2yf0 A:306-329,330-335,341-356,360-375,395-412
3ofd N:13-32,32-37,37-58,59-71,72-88
2h7s C:127-146,146-151,234-268,267-278,357-379
2h7s A:127-146,146-151,234-268,267-278,357-379
3i62 A:351-371,374-380,382-402,522-545,547-564
2g6z B:237-256,258-264,265-283,285-298,303-319
2g6z C:237-256,258-264,265-283,285-298,303-319
2g6z A:237-256,258-264,265-283,285-298,303-318
2i6o A:74-89,91-97,98-116,118-131,136-150
3ffz A:518-528,549-553,556-565,568-589,659-727
3awe B:336-355,357-363,365-382,386-399,412-430
3awe A:336-355,357-363,365-382,386-399,412-430
3awe C:336-355,357-363,365-382,386-399,412-430
2i6p A:74-89,91-97,98-116,118-131,136-150
3dsi B:178-205,206-210,306-341,341-360,473-493
3e3l A:575-594,600-609,613-633,735-748,772-794
3f99 A:361-387,398-404,405-422,428-441,447-462
3dsj B:178-205,206-210,306-341,341-360,473-493
2gwd A:173-196,244-250,267-276,393-411,471-480
2gwd A:173-196,244-250,253-268,393-411,471-480
1vt2 N:13-32,32-37,37-58,59-71,72-88
3fz0 C:13-26,28-38,42-58,237-248,341-355
3fz0 A:13-26,28-38,42-58,237-248,341-355
3fz0 D:13-26,28-38,42-58,237-248,341-355
3fz0 B:13-26,28-38,42-58,237-248,341-355
3h02 D:106-118,120-127,133-142,225-242,241-261
3h02 E:105-118,120-127,133-142,225-242,241-261
3h02 F:106-118,120-127,133-142,225-242,241-260
3h02 C:106-118,120-127,133-142,225-242,241-261
3h02 B:106-118,120-127,133-142,225-242,241-261
3h02 A:106-118,120-127,133-142,225-242,241-261
2iib A:35-50,56-62,67-75,234-246,336-344
1t2b A:110-135,136-141,224-258,257-268,349-369
1t2b B:117-135,136-141,224-258,257-268,349-369
2iex C:93-106,107-114,120-129,212-229,228-247
2iex A:93-106,107-114,120-129,212-229,228-248
2iex B:93-106,107-114,120-129,212-229,228-248
3dfi A:16-25,36-44,70-87,212-227,226-235
3iw2 A:143-162,162-167,254-288,287-298,377-399
3q8k A:60-78,78-88,134-149,302-315,317-336
3ho8 A:609-620,638-645,655-670,1003-1014,1013-1028
3q8l A:60-78,78-88,134-149,302-315,317-336
3h8s A:39-62,64-70,100-119,282-294,295-302
3lx5 A:64-77,80-88,90-105,195-206,207-215
3ss8 A:64-77,80-88,90-105,192-206,207-215
3ss8 B:64-77,80-88,90-105,195-206,207-215
3h7i A:39-62,64-70,100-119,282-294,295-302
2xhl B:551-561,582-586,589-598,601-622,689-757
3kfc A:262-290,332-336,346-364,414-446,450-458
1r6g A:265-291,333-337,346-364,416-447,452-460
2rch B:178-205,206-210,306-341,341-360,473-493
3mkn C:13-26,29-38,42-58,210-223,294-310
3mkn B:13-26,29-38,42-58,210-232,294-310
3mkn A:13-26,29-38,42-58,210-229,294-310
3mkn D:13-26,29-38,42-58,210-229,294-310
3cxv A:106-128,130-134,219-253,252-263,347-367
3h8w A:39-62,64-70,100-119,282-294,295-302
3epw B:12-26,29-37,42-61,232-253,312-327
3epw A:12-26,29-37,42-62,232-253,312-327
2ckq A:246-263,333-339,338-352,371-388,394-431
2ckq B:246-263,333-338,338-352,371-388,394-431
3be0 A:117-135,136-141,224-258,257-268,349-369
2yd0 A:395-414,530-539,632-650,653-667,669-691
1xoi B:1575-1594,1600-1609,1613-1633,1735-1748,1772-1794
1xoi A:575-594,600-609,613-633,735-748,772-794
3a1v A:80-93,96-103,106-121,212-223,224-235
3a1v B:80-93,96-103,106-121,212-223,224-235
3emu A:370-390,392-398,399-417,419-432,437-456
3qnf B:395-414,530-539,632-650,653-667,669-691
3oi5 R:13-32,32-37,37-58,59-71,72-88
2hcm A:69-88,90-96,98-115,117-130,135-153
3n0a A:134-153,155-162,164-180,184-197,202-217
2iy8 A:35-50,56-62,67-75,234-246,336-344
2g1p A:39-46,48-55,56-70,69-82,144-158
2nt2 B:366-385,387-392,394-412,414-427,432-448
2nt2 A:366-385,387-392,394-412,414-427,432-448
3hri D:179-198,203-211,256-270,271-278,283-300
3rgq A:175-193,195-201,205-220,222-235,240-259
3s4o A:79-101,105-112,114-132,134-147,151-161
2wiy A:257-279,284-288,377-411,420-436,503-524
2j17 B:114-133,135-141,142-160,162-175,180-196
2uzf A:94-107,109-115,121-130,213-230,229-248
2uzf B:94-107,108-115,121-130,213-230,229-249
2wic A:74-84,87-95,97-112,197-211,212-220
3t89 D:106-118,120-127,133-142,225-242,241-261
3t89 C:106-118,120-127,133-142,225-242,241-261
3t89 F:106-118,120-127,133-142,225-242,241-261
3t89 A:106-118,120-127,133-142,225-242,241-261
3t89 B:106-118,120-127,133-142,225-242,241-261
3t89 E:106-118,120-127,133-142,225-242,241-261
2nxx H:349-376,419-423,432-450,499-532,536-544
2nxx F:349-376,419-423,432-450,499-532,536-544
2nxx E:349-376,419-423,432-450,499-532,536-544
2nxx G:349-376,419-423,432-450,499-532,536-544
2c40 A:11-25,27-35,40-56,218-232,295-310
2c40 B:11-25,27-35,40-56,218-232,295-310
3mkm C:13-26,29-38,42-58,210-225,294-310
3mkm B:13-26,28-38,42-58,210-225,294-310
3mkm A:13-26,28-38,42-58,210-224,294-310
3mkm D:13-26,29-38,42-58,210-224,294-310
3e3o A:575-594,600-609,613-633,735-748,772-794
3iby D:69-82,85-93,95-110,196-210,211-219
3b1w C:64-77,80-88,90-105,195-206,207-215
3b1w B:64-77,80-88,90-105,195-206,207-215
3b1w D:64-77,80-88,90-105,192-206,207-215
3b1w A:64-77,80-88,90-105,195-206,207-215
3fwj A:127-146,146-151,234-268,267-278,359-379
3kni R:13-32,32-37,37-58,59-71,72-88
3oas N:13-32,32-37,37-58,59-71,72-88
3og0 N:13-32,32-37,37-58,59-71,72-88
3i22 N:13-32,32-37,37-58,59-71,72-88
2zwu A:127-146,146-151,234-268,267-278,357-379
2q05 B:84-103,105-111,112-130,134-150,155-170
2q05 C:84-103,105-111,112-130,134-150,155-170
2q05 A:84-103,105-110,112-129,133-150,155-169
3d64 B:113-127,134-140,141-154,156-163,165-183
3mes B:196-216,288-293,293-307,326-343,350-377
3mes A:196-216,288-293,293-307,326-343,350-377
3fi8 A:229-245,308-313,313-327,346-363,372-403
3csv A:135-156,214-218,218-229,235-251,253-284
3r8t N:13-32,32-37,37-58,59-71,72-88
2x5l A:143-162,162-167,254-288,287-298,377-399
2c84 A:35-50,56-62,67-75,234-246,336-344
3ro1 A:74-89,91-97,101-116,118-131,136-150
2i6m A:74-89,91-97,98-116,118-131,136-150
3h8j A:39-62,65-70,100-119,282-294,295-302
3cxy A:106-128,130-134,219-253,252-263,347-367
3k53 A:67-80,83-91,93-108,202-213,214-226
3k53 D:67-80,83-90,93-108,202-213,214-226
3k53 B:67-80,83-91,93-108,202-213,214-226
3k53 C:67-80,83-91,93-108,202-213,214-226
3q8m B:60-78,78-88,134-149,302-315,317-334
3q8m A:60-78,78-88,134-149,302-315,317-334
2z3u A:125-144,145-149,240-274,273-284,366-386
3i5x A:351-371,374-380,382-402,522-545,547-564
2zuh A:127-146,146-151,234-268,267-278,357-379
3i5y A:351-371,374-380,382-402,522-545,547-564
3b1v A:64-77,80-88,90-105,195-206,207-215
2xad A:16-25,36-44,70-87,215-230,243-256
2xad C:16-25,36-44,70-87,215-230,243-256
1yz4 B:62-81,83-88,93-108,110-123,128-141
3i1p N:13-32,32-37,37-58,59-71,72-88
1zzw B:382-401,403-408,412-428,430-443,448-465
3nv5 A:128-147,147-151,241-275,274-285,364-386