Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 2aao-A 7.4 2.2 70 147 27 PDB MOLECULE: CALCIUM-DEPENDENT PROTEIN KINASE, ISOFORM AK1;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1B Sbjct=2aaoA Z-score=7.4
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DSSP llhhhhhhhhhhllllhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHLLLLLLLEEHHHH Query ispnvlnnmksymkhsnirniiinimaheLSVINNHIKYINELFYKLDTNHNGSLSHREI 60 ident | | | | | | | Sbjct ----------------xnkfkkxalrviaESLSEEEIAGLKEXFNXIDADKSGQITFEEL 44 DSSP ----------------lhhhhhhhhhhhhHHLLHHHHHHHHHHHHHHLLLLLLLLLHHHH DSSP HHHHH--HLLLLHHHHHHHHHHHLLLLLLEELHHHHHHHHLllllllhhhhhhhhhllll Query YTVLA--SVGIKKWDINRILQALDINDRGNITYTEFMAGCYrwknitflkaafnkidkde 118 ident | | | || | | | | || | Sbjct KAGLKrvGANLKESEILDLXQAADVDNSGTIDYKEFIAATL-------hlnkieredhlf 97 DSSP HHHHHhhLLLLLHHHHHHHHHHHLLLLLLLLLHHHHHHHHL-------llhhhhllhhhh DSSP lllllhhhhhhhlllllllhhhhhhhhhhhhlllllllhhhhhhhhhlll Query dgyisksdivslvhdkvldnndidnfflsvhsiinkisfqefkdymlstf 168 ident Sbjct aaftyfdkdgsgyitpdelqqaceeeelxrdvdqdndgridynefvaxxq 147 DSSP hhhhhhlllllllllhhhhhhhlllllhhhhhlllllllllhhhhhhhhl