Results

Matches to full PDB Dali: mol1B,

Query: mol1B

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

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Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
   1:  2aao-A  7.4  2.2   70   147   27 PDB  MOLECULE: CALCIUM-DEPENDENT PROTEIN KINASE, ISOFORM AK1;             


Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=mol1B Sbjct=2aaoA Z-score=7.4

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DSSP  llhhhhhhhhhhllllhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHLLLLLLLEEHHHH
Query ispnvlnnmksymkhsnirniiinimaheLSVINNHIKYINELFYKLDTNHNGSLSHREI   60
ident                               |     |    | |   |    |     | 
Sbjct ----------------xnkfkkxalrviaESLSEEEIAGLKEXFNXIDADKSGQITFEEL   44
DSSP  ----------------lhhhhhhhhhhhhHHLLHHHHHHHHHHHHHHLLLLLLLLLHHHH


DSSP  HHHHH--HLLLLHHHHHHHHHHHLLLLLLEELHHHHHHHHLllllllhhhhhhhhhllll
Query YTVLA--SVGIKKWDINRILQALDINDRGNITYTEFMAGCYrwknitflkaafnkidkde  118
ident    |       |   |    || |    | | | || |                      
Sbjct KAGLKrvGANLKESEILDLXQAADVDNSGTIDYKEFIAATL-------hlnkieredhlf   97
DSSP  HHHHHhhLLLLLHHHHHHHHHHHLLLLLLLLLHHHHHHHHL-------llhhhhllhhhh


DSSP  lllllhhhhhhhlllllllhhhhhhhhhhhhlllllllhhhhhhhhhlll
Query dgyisksdivslvhdkvldnndidnfflsvhsiinkisfqefkdymlstf  168
ident                                                   
Sbjct aaftyfdkdgsgyitpdelqqaceeeelxrdvdqdndgridynefvaxxq  147
DSSP  hhhhhhlllllllllhhhhhhhlllllhhhhhlllllllllhhhhhhhhl