Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 3i4s-A 24.5 0.8 132 134 42 PDB MOLECULE: HISTIDINE TRIAD PROTEIN;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=3i4sA Z-score=24.5
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DSSP lhhHLLLLHHHHHHEEEEEELLLEEEEEELLLLLLEEEEEELLLLLLLHHHLLHHHHHHH Query gxtTFTLDERLERDGIPIGTLGLCQXRLXNDRRWPWLILVPQRADIKEVFELTPLDQAXL 60 ident | || | | || | | | ||| ||| | | | | || | Sbjct ---AWSLHSRLKEDTIDIGDLPLSKVLVIKDANYPWLLLVPRRPDAVEIIDLDEVQQAQL 57 DSSP ---LLLLLHHHHHHEEEEEELLLEEEEEELLLLLLEEEEEELLLLLLLHHHLLHHHHHHH DSSP HHHHHHHHHHHHHHHLLLEEEEELLLLLLLLLLEEEEEELLLLLLLLLLLLLLLLLLLLL Query TFETNLVAAGLKKATGAEKINIGALGNIVRQLHVHVIARREGDPNWPGPVWGFGKAEPWP 120 ident | | || | | || |||| | ||||| |||| || || |||| Sbjct MTEISRVSRALKEITKCDKLNIAALGNLVPQLHVHIIARRTGDAAWPRPVWGVMQPLAHD 117 DSSP HHHHHHHHHHHHHHHLLLEEEEEELLLLLLLLLEEEEEELLLLLLLLLLLLLLLLLLLLL DSSP HHHHHHHHHHHHHHL-- Query EEEHRTFAARIXENL-- 135 ident | | Sbjct ATEVQNFISALRRKIwl 134 DSSP HHHHHHHHHHHHHHHll