Results

Matches to full PDB Dali: mol1A,

Query: mol1A

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

Expand gaps

Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
   1:  3i4s-A 24.5  0.8  132   134   42 PDB  MOLECULE: HISTIDINE TRIAD PROTEIN;                                   


Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=mol1A Sbjct=3i4sA Z-score=24.5

back to top
DSSP  lhhHLLLLHHHHHHEEEEEELLLEEEEEELLLLLLEEEEEELLLLLLLHHHLLHHHHHHH
Query gxtTFTLDERLERDGIPIGTLGLCQXRLXNDRRWPWLILVPQRADIKEVFELTPLDQAXL   60
ident       |  ||  | | || | |       |   ||| ||| | |  |   |    || |
Sbjct ---AWSLHSRLKEDTIDIGDLPLSKVLVIKDANYPWLLLVPRRPDAVEIIDLDEVQQAQL   57
DSSP  ---LLLLLHHHHHHEEEEEELLLEEEEEELLLLLLEEEEEELLLLLLLHHHLLHHHHHHH


DSSP  HHHHHHHHHHHHHHHLLLEEEEELLLLLLLLLLEEEEEELLLLLLLLLLLLLLLLLLLLL
Query TFETNLVAAGLKKATGAEKINIGALGNIVRQLHVHVIARREGDPNWPGPVWGFGKAEPWP  120
ident   |   |   ||  |   | || |||| | ||||| |||| ||  || ||||        
Sbjct MTEISRVSRALKEITKCDKLNIAALGNLVPQLHVHIIARRTGDAAWPRPVWGVMQPLAHD  117
DSSP  HHHHHHHHHHHHHHHLLLEEEEEELLLLLLLLLEEEEEELLLLLLLLLLLLLLLLLLLLL


DSSP  HHHHHHHHHHHHHHL--
Query EEEHRTFAARIXENL--  135
ident   |   |          
Sbjct ATEVQNFISALRRKIwl  134
DSSP  HHHHHHHHHHHHHHHll