Results

Parseable data
Matches to PDB90
Dali: mol1A,

Query: mol1A

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

Expand gaps

Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
   1:  2k5q-A  9.0  3.4   85   105   39 PDB  MOLECULE: HYPOTHETICAL MEMBRANE ASSOCIATED PROTEIN BCR97A;           


Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=mol1A Sbjct=2k5qA Z-score=9.0

back to top
DSSP  llLLLLLLEEEEEEELLLLLEEEL--------LLEEEEEEEEELLLLLEEEEEEEELLLL
Query grFNPFIHQQDVYVQIDRDGRHLS--------PGGTEYTLDGYNASGKKEEVTFFAGKEL   52
ident             ||||  ||                || | |    ||  |  | | | |
Sbjct -mDLNRMGKDEYYVQITVDGKEVHskadngqkYKDYEYKLTGFDKDGKEKELEFTAQKNL   59
DSSP  -lLLLLLLLEEEEEELLLLLLEEHhhhlllllLLEEEEEEEEELLLLLEEEEEEEELLLL


DSSP  LLLLEEEEEEEL-LEEEEEEEELHHHLLHHHHHHHL----------
Query RKNAYLKVKAKG-KYVETWEEVKFEDXPDSVQSKLK----------   87
ident || | | |     | |  |||||    |  |  ||           
Sbjct RKEAFLRVYHSDkKGVSAWEEVKKDELPAKVKEKLGvklehhhhhh  105
DSSP  LLLLEEEEEELLlLLLLLEEEELLLLLLLHHHHHLLllllllllll