Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
Expand gaps
Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 2k5q-A 9.0 3.4 85 105 39 PDB MOLECULE: HYPOTHETICAL MEMBRANE ASSOCIATED PROTEIN BCR97A;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=2k5qA Z-score=9.0
back to top
DSSP llLLLLLLEEEEEEELLLLLEEEL--------LLEEEEEEEEELLLLLEEEEEEEELLLL Query grFNPFIHQQDVYVQIDRDGRHLS--------PGGTEYTLDGYNASGKKEEVTFFAGKEL 52 ident |||| || || | | || | | | | | Sbjct -mDLNRMGKDEYYVQITVDGKEVHskadngqkYKDYEYKLTGFDKDGKEKELEFTAQKNL 59 DSSP -lLLLLLLLEEEEEELLLLLLEEHhhhlllllLLEEEEEEEEELLLLLEEEEEEEELLLL DSSP LLLLEEEEEEEL-LEEEEEEEELHHHLLHHHHHHHL---------- Query RKNAYLKVKAKG-KYVETWEEVKFEDXPDSVQSKLK---------- 87 ident || | | | | | ||||| | | || Sbjct RKEAFLRVYHSDkKGVSAWEEVKKDELPAKVKEKLGvklehhhhhh 105 DSSP LLLLEEEEEELLlLLLLLEEEELLLLLLLHHHHHLLllllllllll