Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 3ejn-A 47.6 1.9 439 450 33 PDB MOLECULE: SUSD HOMOLOG;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=3ejnA Z-score=47.6
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DSSP LLLHHHHHHHHHHHHHLLlllhhHHHHHHHLLLEEELLLLLHHHHLLLLLLLLHHHHHHH Query KVTSSLLATGLLLDITSSsasksFIYDELLAKQXAWGESXEDYQYNVFGRSGFGGYTTLI 60 ident || | | || | || | | Sbjct QTHPKLLLTQICXNAFKR-----GTDGXYATKKVIQADGESADQYYKWTRGSFGYYDNLR 55 DSSP LLLLHHHHHHHHHHHHLL-----LLHHHLLLLLEEELLLLLLLLLLLLLLLLLLHHHHHH DSSP HHHHHHHLL-LLLLhHHHHHHHHHHHHHHHHHHHHHHLLLLLLLHHHhhlllLLLLLLLH Query NAQKXVESV-SDDNvNAYDGLAHFIKAYKIFYXSXEXGDLPYEEALQgelglVRPKYNTQ 119 ident | ||| | | | | || || || || | | | Sbjct NVQKXGEEAeRVNA-PVYTALTKFFRAYYFYELTLRFGDIPYSQALK-----YTPEYDAQ 109 DSSP HHHHHHHHHhHHLL-HHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLL-----LLLLLLLH DSSP HHHHHHHHHHHHHHHHHHHLL-LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLHHHLLLL Query KEVXNFILSDLETAYELFSTA-KDFDGDPILGGSISKWKKATTAFQLKVLXHLSKKESDA 178 ident | || | | | ||| | | | | | ||||| || Sbjct EDVFAGILQELREADEILANDaSVIDGDIIYNGNSTQWRKLINSFRLKVLXTLSNHTTVG 169 DSSP HHHHHHHHHHHHHHHHHHHLLlLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLEEL DSSP LLLHHHHHHHHHHHLLLLLLHHHLEEELLLLL--LLLLLLLllLLLHhHEEELHHHHHHH Query DLKVKERFARIVASGSLXESNEDNLQXKYAAN--TVYPFHNtnTKHAgYAXLSTXLIDKF 236 ident | | || | || | | || | | Sbjct NINIASEFKNIATNSPLXNSLADNGQLVYLDQqgNRYPQFN--AQWS-GYYXDDTFIQRX 226 DSSP LEEHHHHHHHHHHHLLLLLLHHHLEEELLLLLllLLLLLLL--LLLL-LEEELHHHHHHH DSSP HHHLLLLHHHHLLLLHHHHHLLLLLLLHHHLLLLLLLLLHhHHHHHHHLllLLLLLHHHL Query KATGDIRXFYYAKPAKAKLNEGVTADSWDAYIGTDPSLPFeQIEKAYATeqYSGFNARYT 296 ident | | | || | | | || | | | | Sbjct RERRDPRLFIFSAQTNKGKTEGKPIDDFSSYEGGDPAAPY-SDAIIKVS--ISPINDRFR 283 DSSP HHLLLLLHHHHLLLLHHHHHLLLLLLLHHHLLLLLLLLLL-LLHHHHHL--LLLLLHHHL DSSP LLLLLLLEEEELHHHHHHHHHHHHHLLLLLLLHHHHHHHHHHHHHHHHHHLLLLlhhhhl Query DYPSGEPVVRLGYAEQNFILAEAAVRGWISGDASAYYKKAIRAHXEFIASNTPDeevyhh 356 ident | || |||| ||||| ||||||| | || | ||| | | Sbjct TDPIVEPTXLXGYAELQQILAEAVVRGWISGNAQTYYEKGIRASFSFYETHAKD-----y 338 DSSP LLLLLLLEEEELHHHHHHHHHHHHHLLLLLLLHHHHHHHHHHHHHHHHHHHLHH-----h DSSP lLLLLHHHHHHHHLLHHHLL--LLLHHHHHHHHHHHHHHHLLLLLLLHHHHHHHHHLLLL Query gHPITEEAIAAFLETPAIQL--SGEKEEDIEKILTQRYLASFXQHPYDVYYDYRRTGYPV 414 ident | | | | | || || | | || | | | | ||||| Sbjct aGYLNENAVAQYLKEPLVDFtqASGTEEQIERIIXQKYLVTFYQGNWDSFYEQLRTGYPD 398 DSSP hHHLLHHHHHHHLLLLLLLHhhLLLHHHHHHHHHHHHHLLLLLLLLLHHHHHHHHHLLLL DSSP LLLLLlllllllLLLLLLLLLLLHHHHHHLHHHHHHHHHHHHLL-LLLLLLLLHHHL-- Query LPINPatnrntxNDRLPXRWXYPKSESDYNLEHQNEALERQFGG-VDDVNKLXWILQ-- 470 ident | ||||| | | | | |||| | | | Sbjct FRRPA-------GTEIPKRWXYPQGEYDNNGTNVETAITRQFGAgNDKINQATWWQKks 450 DSSP LLLLL-------LLLLLLLLLLLHHHHHHLHHHHHHHHHHHHLLlLLLLLLLLHHHLll