Results

Matches to full PDB Dali: mol1A,

Query: mol1A

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

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Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
   1:  3ejn-A 47.6  1.9  439   450   33 PDB  MOLECULE: SUSD HOMOLOG;                                              


Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=mol1A Sbjct=3ejnA Z-score=47.6

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DSSP  LLLHHHHHHHHHHHHHLLlllhhHHHHHHHLLLEEELLLLLHHHHLLLLLLLLHHHHHHH
Query KVTSSLLATGLLLDITSSsasksFIYDELLAKQXAWGESXEDYQYNVFGRSGFGGYTTLI   60
ident      || |                      |           ||    |  || |  | 
Sbjct QTHPKLLLTQICXNAFKR-----GTDGXYATKKVIQADGESADQYYKWTRGSFGYYDNLR   55
DSSP  LLLLHHHHHHHHHHHHLL-----LLHHHLLLLLEEELLLLLLLLLLLLLLLLLLHHHHHH


DSSP  HHHHHHHLL-LLLLhHHHHHHHHHHHHHHHHHHHHHHLLLLLLLHHHhhlllLLLLLLLH
Query NAQKXVESV-SDDNvNAYDGLAHFIKAYKIFYXSXEXGDLPYEEALQgelglVRPKYNTQ  119
ident | ||| |          |  |  |  ||         || ||  ||        | |  |
Sbjct NVQKXGEEAeRVNA-PVYTALTKFFRAYYFYELTLRFGDIPYSQALK-----YTPEYDAQ  109
DSSP  HHHHHHHHHhHHLL-HHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLL-----LLLLLLLH


DSSP  HHHHHHHHHHHHHHHHHHHLL-LLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLHHHLLLL
Query KEVXNFILSDLETAYELFSTA-KDFDGDPILGGSISKWKKATTAFQLKVLXHLSKKESDA  178
ident   |   ||  |  | |         ||| |  |    | |    | ||||| ||      
Sbjct EDVFAGILQELREADEILANDaSVIDGDIIYNGNSTQWRKLINSFRLKVLXTLSNHTTVG  169
DSSP  HHHHHHHHHHHHHHHHHHHLLlLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLEEL


DSSP  LLLHHHHHHHHHHHLLLLLLHHHLEEELLLLL--LLLLLLLllLLLHhHEEELHHHHHHH
Query DLKVKERFARIVASGSLXESNEDNLQXKYAAN--TVYPFHNtnTKHAgYAXLSTXLIDKF  236
ident        |  |     || |  || |  |       ||  |               |   
Sbjct NINIASEFKNIATNSPLXNSLADNGQLVYLDQqgNRYPQFN--AQWS-GYYXDDTFIQRX  226
DSSP  LEEHHHHHHHHHHHLLLLLLHHHLEEELLLLLllLLLLLLL--LLLL-LEEELHHHHHHH


DSSP  HHHLLLLHHHHLLLLHHHHHLLLLLLLHHHLLLLLLLLLHhHHHHHHHLllLLLLLHHHL
Query KATGDIRXFYYAKPAKAKLNEGVTADSWDAYIGTDPSLPFeQIEKAYATeqYSGFNARYT  296
ident     | | |           ||   |    | | ||  |             |  | |  
Sbjct RERRDPRLFIFSAQTNKGKTEGKPIDDFSSYEGGDPAAPY-SDAIIKVS--ISPINDRFR  283
DSSP  HHLLLLLHHHHLLLLHHHHHLLLLLLLHHHLLLLLLLLLL-LLHHHHHL--LLLLLHHHL


DSSP  LLLLLLLEEEELHHHHHHHHHHHHHLLLLLLLHHHHHHHHHHHHHHHHHHLLLLlhhhhl
Query DYPSGEPVVRLGYAEQNFILAEAAVRGWISGDASAYYKKAIRAHXEFIASNTPDeevyhh  356
ident   |  ||    ||||   ||||| ||||||| |  || | |||   |      |      
Sbjct TDPIVEPTXLXGYAELQQILAEAVVRGWISGNAQTYYEKGIRASFSFYETHAKD-----y  338
DSSP  LLLLLLLEEEELHHHHHHHHHHHHHLLLLLLLHHHHHHHHHHHHHHHHHHHLHH-----h


DSSP  lLLLLHHHHHHHHLLHHHLL--LLLHHHHHHHHHHHHHHHLLLLLLLHHHHHHHHHLLLL
Query gHPITEEAIAAFLETPAIQL--SGEKEEDIEKILTQRYLASFXQHPYDVYYDYRRTGYPV  414
ident      | | |  |  |          || || |  | ||  | |   |  |   ||||| 
Sbjct aGYLNENAVAQYLKEPLVDFtqASGTEEQIERIIXQKYLVTFYQGNWDSFYEQLRTGYPD  398
DSSP  hHHLLHHHHHHHLLLLLLLHhhLLLHHHHHHHHHHHHHLLLLLLLLLHHHHHHHHHLLLL


DSSP  LLLLLlllllllLLLLLLLLLLLHHHHHHLHHHHHHHHHHHHLL-LLLLLLLLHHHL--
Query LPINPatnrntxNDRLPXRWXYPKSESDYNLEHQNEALERQFGG-VDDVNKLXWILQ--  470
ident                 | |||||  | | |      |  ||||   |  |   |     
Sbjct FRRPA-------GTEIPKRWXYPQGEYDNNGTNVETAITRQFGAgNDKINQATWWQKks  450
DSSP  LLLLL-------LLLLLLLLLLLHHHHHHLHHHHHHHHHHHHLLlLLLLLLLLHHHLll