Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
Expand gaps
Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 2qmw-A 24.9 3.0 263 264 29 PDB MOLECULE: PREPHENATE DEHYDRATASE;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=2qmwA Z-score=24.9
back to top
DSSP LEEEEELLLLLHHHHHHLLLLLHHHLEEEEELLHHHHHHHHHLLLLLEEEEEEELLLLLL Query VTYTFLGPQGTFTEAALXQVPGAADATRIPCTNVNTALERVRAGEADAAXVPIENSVEGG 60 ident ||| ||| | | || | | | |||||| || Sbjct XQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGT 60 DSSP LEEEEELLLLLHHHHHHHHHLLLLLLEEEEELLHHHHHHHHHHLLLEEEEEEEELLLLLL DSSP HHHHHHHLLLLLlLEEEEEEEEELLLEEEELLLLLHHHLLEEEELHHHHLLLHHHHHHHL Query VTATLDAIATGQeLRIIREALVPITFVLVARPGVELSDIKRISTHGHAWAQCRLWVDEHL 120 ident || | | | | | |||| | | | Sbjct INIVADALAQQD-VFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQ 119 DSSP LHHHHHHHHLLL-LEEEEEEEEELLEEEELLLLLLLLLLLEEEELHHHHHHLHHHHHHLL DSSP llLEEEELLLHHHHHHHLllllLLLLEEEELHHHHHHLLlLEEEELLLLLLLLLEEEEEE Query pnADYVPGSSTAASAXGLleddAPYEAAICAPLIAAEQPgLNVLAEDIGDNPDAVTRFIL 180 ident || || | ||| | | | |||| Sbjct --FDYDYVDSTIQSLTKI----ENGVAAIAPLGSGEAYG-FTPIDTHIEDYPHNVTRFLV 172 DSSP --LEEEELLLHHHHHHLL----LLLEEEEEELLLLHHHL-LLEEEELLLLLLLLEEEEEE DSSP EELLLLLLLLllLEEEEEEEELLLLLLLHHHHHHHHHHLLLLLEEEEEEEELLLlLLLEE Query VSRPGALPERtgADKTTVVVPLPEDHPGALXEILDQFASRGVNLSRIESRPTGQyLGHYF 240 ident | | || | | || ||| ||||| || | Sbjct IKNQQQFDQN--ATSLXFLITPXHDKPGLLASVLNTFALFNINLSWIESRPLKTqLGXYR 230 DSSP EELLLLLLLL--LLEEEEEEEELLLLLLHHHHHHHHHHLLLLLEEEEEEEELLLlLLLEE DSSP EEEEEELLlLLHHHHHHHHHHHHHLLLLEEEEEEEllllllllllllllhhhhhhhhhhh Query FSIDADGHaTDSRVADALAGLHRISPATRFLGSYAradkqpavvaphtsdaafasahawv 300 ident | || | | | Sbjct FFVQADSA-ITTDIKKVIAILETLDFKVEXIGAFN------------------------- 264 DSSP EEEEELLL-LLHHHHHHHHHHHHLLEEEEEEEEEL------------------------- DSSP hhhhhl Query dsilkg 306 ident Sbjct ------ 264 DSSP ------