Results

Matches to full PDB Dali: mol1A,

Query: mol1A

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

Expand gaps

Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
   1:  2qmw-A 24.9  3.0  263   264   29 PDB  MOLECULE: PREPHENATE DEHYDRATASE;                                    


Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=mol1A Sbjct=2qmwA Z-score=24.9

back to top
DSSP  LEEEEELLLLLHHHHHHLLLLLHHHLEEEEELLHHHHHHHHHLLLLLEEEEEEELLLLLL
Query VTYTFLGPQGTFTEAALXQVPGAADATRIPCTNVNTALERVRAGEADAAXVPIENSVEGG   60
ident      ||| |||   |  |      ||  |  |       |         |||||| || 
Sbjct XQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGT   60
DSSP  LEEEEELLLLLHHHHHHHHHLLLLLLEEEEELLHHHHHHHHHHLLLEEEEEEEELLLLLL


DSSP  HHHHHHHLLLLLlLEEEEEEEEELLLEEEELLLLLHHHLLEEEELHHHHLLLHHHHHHHL
Query VTATLDAIATGQeLRIIREALVPITFVLVARPGVELSDIKRISTHGHAWAQCRLWVDEHL  120
ident      || |         |    | | |        ||||       |  |       | 
Sbjct INIVADALAQQD-VFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQ  119
DSSP  LHHHHHHHHLLL-LEEEEEEEEELLEEEELLLLLLLLLLLEEEELHHHHHHLHHHHHHLL


DSSP  llLEEEELLLHHHHHHHLllllLLLLEEEELHHHHHHLLlLEEEELLLLLLLLLEEEEEE
Query pnADYVPGSSTAASAXGLleddAPYEAAICAPLIAAEQPgLNVLAEDIGDNPDAVTRFIL  180
ident    ||    ||  |            |||                  | | |  ||||  
Sbjct --FDYDYVDSTIQSLTKI----ENGVAAIAPLGSGEAYG-FTPIDTHIEDYPHNVTRFLV  172
DSSP  --LEEEELLLHHHHHHLL----LLLEEEEEELLLLHHHL-LLEEEELLLLLLLLEEEEEE


DSSP  EELLLLLLLLllLEEEEEEEELLLLLLLHHHHHHHHHHLLLLLEEEEEEEELLLlLLLEE
Query VSRPGALPERtgADKTTVVVPLPEDHPGALXEILDQFASRGVNLSRIESRPTGQyLGHYF  240
ident             |           | || |   |  ||    ||| |||||    || | 
Sbjct IKNQQQFDQN--ATSLXFLITPXHDKPGLLASVLNTFALFNINLSWIESRPLKTqLGXYR  230
DSSP  EELLLLLLLL--LLEEEEEEEELLLLLLHHHHHHHHHHLLLLLEEEEEEEELLLlLLLEE


DSSP  EEEEEELLlLLHHHHHHHHHHHHHLLLLEEEEEEEllllllllllllllhhhhhhhhhhh
Query FSIDADGHaTDSRVADALAGLHRISPATRFLGSYAradkqpavvaphtsdaafasahawv  300
ident |   ||            | |          |                            
Sbjct FFVQADSA-ITTDIKKVIAILETLDFKVEXIGAFN-------------------------  264
DSSP  EEEEELLL-LLHHHHHHHHHHHHLLEEEEEEEEEL-------------------------


DSSP  hhhhhl
Query dsilkg  306
ident       
Sbjct ------  264
DSSP  ------