Results

Matches to full PDB Dali: mol1A,

Query: mol1A

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

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Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
   1:  2rgn-B 16.5  3.4  177   327   20 PDB  MOLECULE: GUANINE NUCLEOTIDE-BINDING PROTEIN G(Q) SUBUNIT            


Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=mol1A Sbjct=2rgnB Z-score=16.5

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DSSP  ---------LHHHHHHHHHHHHHHHHHHHHHHHHHHHLHHHHHHHHHhhllllHHHHHHH
Query ---------QSRALVIAQELLSSEKAYVEXLQHLNLDFHGAVXRALDdxdhedTLAREEL   51
ident            |      ||   || ||  |                         |   
Sbjct seeeqkkkaLERSMYVLSELVETEKMYVDDLGQIVEGYMATMAAQGV-----pESLRGRD   55
DSSP  llhhhhlhhHHHHHHHHHHHHHHHHHHHHHHHHHHLLHHHHHHHHLL-----lLLLHHHH


DSSP  HHHHHHHHHHHHHHH-HHHHHHHHHHHLLlllLLLLHHHHLLLLLHHHHHHHHHHHHHHH
Query RQGLSELPAIHDLHQ-GILEELEERLSNWesqQKVADVFLAREQGFDHHATHILQFDRYL  110
ident |        |   |    | ||   |         |  |   |                 
Sbjct RIVFGNIQQIYEWHRdYFLQELQRCLKDP---DWLAQLFIKHERRLHMYVVYCQNKPKSE  112
DSSP  HHHHLLHHHHHHHHHhLHHHHHHHHHLLH---HHHHHHHHHLLLLLHHHHHHHHLLHHHH


DSSP  HHHHHHHllLHHHHHHHHHHHLL-LHHHHHHHHHHHHHHHHHHHHHHHLLL-LLLLHhHH
Query GLLSENClhSPRLAAAVREFEQS-TAKHRLLRVVQRLFQYQVLLTDYLNNL-CPDSAeYD  168
ident    ||                        |   |||   || || | |            
Sbjct HVVSEFG--DSYFEELRQQLGHRlQLNDLLIKPVQRIMKYQLLLKDFLKYYnRAGMD-TA  169
DSSP  HHHLLLL--HHHHHHHHHHHLLLlLHHHHLLHHHHHHLLHHHHHHHHHHHLlLLLLL-HH


DSSP  HHHHHHHHHHHHHHHHHHHLL-----------------------lhhhhhhhhhhhhhee
Query NTQGALSLISKVTDRANDSXE-----------------------qgenlqklvhiehsvr  205
ident     |      |  | ||                                          
Sbjct DLEQAVEVMCFVPKRCNDMMTlgrlrgfegkltaqgkllgqdtfwvtepsrgrerrvflf  229
DSSP  HHHHHHHHHHHHHHHHHHHHHhhhllllllllllllleeeeeeeeeelllllleeeeeee


DSSP  llllllllllleeelleeeeeelleeeeeeeeeelleeeeeeellllleeeeeeeellll
Query gqgdllqpgreflkegtlxkvtgknrrprhlflxndvllytypqkdgkyrlkntlavsrp  265
ident                                                             
Sbjct eqiiifsealgpgyvyknsikvsclglegnlqgdpcrfaltsrgpeggiqryvlqaadpa  289
DSSP  lleeeeeeelllleeeeeeeehhheeeeelhhhllleeeeeeellllleeeeeeeellhh


DSSP  llllllleeeeelllleeeeelllhhhhhhhhhhhhhl
Query vxekvpyalkietsesclxlsasscaerdewygclsra  303
ident                                       
Sbjct isqawikhvaqilesqrdflnalqspieyqrresqtns  327
DSSP  hhhhhhhhhhhhhhhhhhhhhhhllhhhhhhhhhhhhl