Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 1wy0-A 38.0 2.1 316 327 31 PDB MOLECULE: GERANYLGERANYL PYROPHOSPHATE SYNTHETASE;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=1wy0A Z-score=38.0
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DSSP ----LHHHHHHHHHHHHHHHHHHHHHLL-LLLHHHHHHHHLLlllllllllllLLLLLHH Query ----DVTALLERGRTLATPVLRAAVDRL-APPMDTVAAYHFGwidaqgnpadgDGGKAVR 55 ident | | | ||| || Sbjct ekyeELFARIKEKAKLIDEKIFELIPEKdPRVLYEAARHYPL-----------AGGKRVR 49 DSSP lhhhHHHHHHHHHHHHHHHHHHHHLLLLlLHHHHHHHHHLHH-----------HLLLLHH DSSP HHHHHHHHHLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHLLLEELLEELHHHHHLHHHH Query PALAVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQA 115 ident | | | | | ||| || || || ||| || || || || | | Sbjct PFVVLTSTEAVGGDPLRAIYPAVAIELIHNYSLVHDDIMDMDETRRGKPTVHRIWGVNMA 109 DSSP HHHHHHHLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLHHHHHLHHHH DSSP HHHHHHHHHHHHHHHHLL--LLHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLHHHH Query ILVGDALFALANEVLLEL--GTVEAGRATRRLTKASRSLIDGQAQDISYEHRDRVSVEEC 173 ident || || || | | | ||| | ||| | | | || Sbjct ILAGDLLFSKAFEAVARAeiPPEKKARVLEVIVKASNELCEGQARDLEFEKKSTVTIEEY 169 DSSP HHHHHHHHHHHHHHHHLLllLHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLHHHH DSSP HHHHHHHLHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLHHHH Query LEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDAT 233 ident || ||||| | | | | | | ||| || | | Sbjct MEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKL 229 DSSP HHHHHHHLHHHHHHHHHHHHHHHLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLHHHH DSSP LLLLLHHHHLLLLLHHHHHHHHHLLhhhHHHHHHHHHHHllllhhhLLHHHHHHHHHHHH Query GKQTWSDLRQRKKSLPVVAALAAGGaasERLGEILTADAkasdfanFSEEEFAARAALIE 293 ident || || | || | | | | Sbjct GKPVGSDIRKGKKTLIVAHFFENAD---EKDKQRFLKIF-----gkDIKSDVMEAIDLLK 281 DSSP LLLLLHHHHHLLLLHHHHHHHHHLL---HHHHHHHHHLL-----llLHHHHHHHHHHHHH DSSP HLLHHHHHHHHHHHHHHHHHHHHLLLLlLHHHHHHHHHHHHHHLL-- Query EAGGREWTADEARRQHTIAIEALDAVDmPDRVRDRFTALADFVVV-- 338 ident | | | | ||| | || | | Sbjct KYGSIDYAAEIAKDMIKKANEALRILP-KSKARMDLELLAKFIVEre 327 DSSP HLLHHHHHHHHHHHHHHHHHLLHHHLL-LLHHHHHHHHHHHHLLLll