Results

Matches to full PDB Dali: mol1A,

Query: mol1A

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

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Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
   1:  1wy0-A 38.0  2.1  316   327   31 PDB  MOLECULE: GERANYLGERANYL PYROPHOSPHATE SYNTHETASE;                   


Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=mol1A Sbjct=1wy0A Z-score=38.0

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DSSP  ----LHHHHHHHHHHHHHHHHHHHHHLL-LLLHHHHHHHHLLlllllllllllLLLLLHH
Query ----DVTALLERGRTLATPVLRAAVDRL-APPMDTVAAYHFGwidaqgnpadgDGGKAVR   55
ident        |       |                    |                 ||| ||
Sbjct ekyeELFARIKEKAKLIDEKIFELIPEKdPRVLYEAARHYPL-----------AGGKRVR   49
DSSP  lhhhHHHHHHHHHHHHHHHHHHHHLLLLlLHHHHHHHHHLHH-----------HLLLLHH


DSSP  HHHHHHHHHLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHLLLEELLEELHHHHHLHHHH
Query PALAVLSAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQA  115
ident |     | |  |  |      ||| || || || ||| || || ||   ||    |   |
Sbjct PFVVLTSTEAVGGDPLRAIYPAVAIELIHNYSLVHDDIMDMDETRRGKPTVHRIWGVNMA  109
DSSP  HHHHHHHLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLHHHHHLHHHH


DSSP  HHHHHHHHHHHHHHHHLL--LLHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLHHHH
Query ILVGDALFALANEVLLEL--GTVEAGRATRRLTKASRSLIDGQAQDISYEHRDRVSVEEC  173
ident || || ||  | |             |      |||  |  ||| |   |    |  || 
Sbjct ILAGDLLFSKAFEAVARAeiPPEKKARVLEVIVKASNELCEGQARDLEFEKKSTVTIEEY  169
DSSP  HHHHHHHHHHHHHHHHLLllLHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLHHHH


DSSP  HHHHHHHLHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLHHHH
Query LEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDAT  233
ident  ||   |||||       |   |   |     |   |   | |||  || |    |    
Sbjct MEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKL  229
DSSP  HHHHHHHLHHHHHHHHHHHHHHHLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLHHHH


DSSP  LLLLLHHHHLLLLLHHHHHHHHHLLhhhHHHHHHHHHHHllllhhhLLHHHHHHHHHHHH
Query GKQTWSDLRQRKKSLPVVAALAAGGaasERLGEILTADAkasdfanFSEEEFAARAALIE  293
ident ||   || |  || | |           |                            |  
Sbjct GKPVGSDIRKGKKTLIVAHFFENAD---EKDKQRFLKIF-----gkDIKSDVMEAIDLLK  281
DSSP  LLLLLHHHHHLLLLHHHHHHHHHLL---HHHHHHHHHLL-----llLHHHHHHHHHHHHH


DSSP  HLLHHHHHHHHHHHHHHHHHHHHLLLLlLHHHHHHHHHHHHHHLL--
Query EAGGREWTADEARRQHTIAIEALDAVDmPDRVRDRFTALADFVVV--  338
ident   |     |  |      | |||         |     || | |   
Sbjct KYGSIDYAAEIAKDMIKKANEALRILP-KSKARMDLELLAKFIVEre  327
DSSP  HLLHHHHHHHHHHHHHHHHHLLHHHLL-LLHHHHHHHHHHHHLLLll