Results

Parseable data
Matches to PDB90
Dali: mol1A,

Query: mol1A

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

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Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
   1:  1jwq-A 24.7  1.7  176   179   34 PDB  MOLECULE: N-ACETYLMURAMOYL-L-ALANINE AMIDASE CWLV;                   


Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=mol1A Sbjct=1jwqA Z-score=24.7

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DSSP  lLEEEEEEELLLLLLLLLLL-LLLLLHHHHHHHHHHHHHHHHHHLLLEEEEELLLLLLLL
Query aSFRVVLDPGHGGIDGGARG-VTGILEKDVTLAFARALRDELQKGSHTIVALTRDSDIFL   59
ident     || | |||  | || |      ||   || |      |       | |||  | ||
Sbjct -MKVVVIDAGHGAKDSGAVGiSRKNYEKTFNLAMALKVESILKQNPKLEVVLTRSDDTFL   59
DSSP  -LEEEEEEELLLLLLLLLLLlLLLLLHHHHHHHHHHHHHHHHHLLLLEEEEELLLLLLLL


DSSP  LHHHHHHHHHHLLLLEEEEEELLLLLLLLLLLEEEEEEllllllhhhhhhhhhhhhhhhh
Query RLSERVKKAQEFDADLFISIHADTIDVHSLRGATVYTIsdeasdaiakslaesenkvdll  119
ident  |  ||| |    |  | ||||         |   |                        
Sbjct ELKQRVKVAENLKANVFVSIHANSSGSSASNGTETYYQ----------------------   97
DSSP  LHHHHHHHHHHLLLLEEEEEEEELLLLLLLLLEEEEEL----------------------


DSSP  hllllllhhhhhhhhh