Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition.
The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious.
Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database,
and to the PDB format coordinate file where the neighbour
is superimposed onto the query structure.
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Summary
No: Chain Z rmsd lali nres %id PDB Description
1: 2zoq-A 38.2 2.1 329 352 40 PDB MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 3;
Pairwise Structural Alignments
Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.
No 1: Query=mol1A Sbjct=2zoqA Z-score=38.2
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DSSP --lllhhhLLLLLLLLLLEEEEEEEEELLLEEEEEEEELLLLEEEEEEEELlLLLLHHHH Query --lyfqgaIIKNVKVPDNYEIKHLIGRGSYGYVYLAYDKNANKNVAIKKVNrMFEDLIDC 58 ident | | || | || | ||| ||||| || | Sbjct vpgevemvKGQPFDVGPRYTQLQYIGEGAYGMVSSAYDHVRKTRVAIKKIS-PFEHQTYC 59 DSSP llllllllLLLLLLLLLLEEEEEEEELLLLLEEEEEEELLLLEEEEEEEEL-LLLLHHHH DSSP HHHHHHHHHHHLLLLLLLLLEEEELLLLLLLLLLLEEEEEELLLEEHHHHHHLlLLLLHH Query KRILREITILNRLKSDYIIRLHDLIIPEDLLKFDELYIVLEIADSDLKKLFKTpIFLTEQ 118 ident | |||| || | | | | ||| || || | | Sbjct QRTLREIQILLRFRHENVIGIRDILRASTLEAMRDVYIVQDLMETDLYKLLKS-QQLSND 118 DSSP HHHHHHHHHHHHLLLLLLLLLLEEELLLLLLLLLLEEEEEELLLEEHHHHHHH-LLLLHH DSSP HHHHHHHHHHHHHHHHHHLLEELLLLLHHHEEELLLLLEEELLHHHLEELL--------- Query HVKTILYNLLLGEKFIHESGIIHRDLKPANCLLNQDCSVKICDFGLARTIN--------- 169 ident | || | | | || |||||| | | | | ||||||||| Sbjct HICYFLYQILRGLKYIHSANVLHRDLKPSNLLINTTCDLKICDFGLARIADpehdhtgfl 178 DSSP HHHHHHHHHHHHHHHHHHLLEELLLLLHHHEEELLLLLEEELLLLLLEELLhhhllllll DSSP lllLLLLLLLLHHHHLlLLLL-LLHHHHHHHHHHHHHHHLLlllllllhhhlLLLLLLLl Query tshVVTRWYRAPELILlQENY-TNSIDIWSTGCIFAELLNMmkshinnptnrFPLFPGSs 228 ident | |||||||| | | |||||| ||| || | | ||| Sbjct texVATRWYRAPEIML-NSKGyTKSIDIWSVGCILAEMLSN-----------RPIFPGK- 225 DSSP lllLLLHHHLLLHHHH-LLLLlLLHHHHHHHHHHHHHHHHL-----------LLLLLLL- DSSP llllhhHHHHHHHHHHHHHLLLLHHHHLLLLLHHHHHHHHLLLLLLLLLHHHHLLLLLHH Query cfphekSNRDQLNIIFNVIGTPPEEDLKCITKQEVIKYIKLFPTRDGIDLSKKYSSISKE 288 ident |||| | | | ||| || | | | Sbjct ------HYLDQLNHILGILGSPSQEDLNCIINMKARNYLQSLPSKTKVAWAKLFPKSDSK 279 DSSP ------LLLHHHHHHHHHHLLLLLLLLLLLLLHHHHHHHHHLLLLLLLLHHHHLLLLLHH DSSP HHHHHHHHLLLLLLLLLLHHHHHLLHHHLLLLLHHHHLLLLLLLLlllLLLL--LLLHHH Query GIDLLESMLRFNAQKRITIDKALSHPYLKDVRKENLENFSTEKIIlpfDDWM--VLSETQ 346 ident ||| || || |||| || |||| | | | Sbjct ALDLLDRMLTFNPNKRITVEEALAHPYLEQYYDPTDEPVAEEPFT---FAMEldDLPKER 336 DSSP HHHHHHHHLLLLLLLLLLHHHHHLLHHHLLLLLHHHLLLLLLLLL---LLLLhhHLLHHH DSSP HHHHHHHHHHHHLLLLlllhhhl Query LRYIFLKEIQSFHADLiipakln 369 ident | | | Sbjct LKELIFQETARFQPGV------- 352 DSSP HHHHHHHHLHHHLLLL-------