Results

Matches to full PDB Dali: mol1A,

Query: mol1A

Select neighbours (check boxes) for viewing as multiple structural alignment or 3D superimposition. The list of neighbours is sorted by Z-score. Similarities with a Z-score lower than 2 are spurious. Each neighbour has links to pairwise structural alignment with the query structure, to pre-computed structural neighbours in the Dali Database, and to the PDB format coordinate file where the neighbour is superimposed onto the query structure.

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Summary

    No:  Chain   Z    rmsd lali nres  %id PDB  Description
   1:  2zoq-A 38.2  2.1  329   352   40 PDB  MOLECULE: MITOGEN-ACTIVATED PROTEIN KINASE 3;                        


Pairwise Structural Alignments

Notation: three-state secondary structure definitions by DSSP (reduced to H=helix, E=sheet, L=coil) are shown above the amino acid sequence. Structurally equivalent residues are in uppercase, structurally non-equivalent residues (e.g. in loops) are in lowercase. Amino acid identities are marked by vertical bars.

No 1: Query=mol1A Sbjct=2zoqA Z-score=38.2

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DSSP  --lllhhhLLLLLLLLLLEEEEEEEEELLLEEEEEEEELLLLEEEEEEEELlLLLLHHHH
Query --lyfqgaIIKNVKVPDNYEIKHLIGRGSYGYVYLAYDKNANKNVAIKKVNrMFEDLIDC   58
ident               |   |     || | || |  |||      |||||    ||    |
Sbjct vpgevemvKGQPFDVGPRYTQLQYIGEGAYGMVSSAYDHVRKTRVAIKKIS-PFEHQTYC   59
DSSP  llllllllLLLLLLLLLLEEEEEEEELLLLLEEEEEEELLLLEEEEEEEEL-LLLLHHHH


DSSP  HHHHHHHHHHHLLLLLLLLLEEEELLLLLLLLLLLEEEEEELLLEEHHHHHHLlLLLLHH
Query KRILREITILNRLKSDYIIRLHDLIIPEDLLKFDELYIVLEIADSDLKKLFKTpIFLTEQ  118
ident  | |||| || |      |   |      |      |||      || || |    |   
Sbjct QRTLREIQILLRFRHENVIGIRDILRASTLEAMRDVYIVQDLMETDLYKLLKS-QQLSND  118
DSSP  HHHHHHHHHHHHLLLLLLLLLLEEELLLLLLLLLLEEEEEELLLEEHHHHHHH-LLLLHH


DSSP  HHHHHHHHHHHHHHHHHHLLEELLLLLHHHEEELLLLLEEELLHHHLEELL---------
Query HVKTILYNLLLGEKFIHESGIIHRDLKPANCLLNQDCSVKICDFGLARTIN---------  169
ident |    ||  | | | ||     |||||| | | |  |  |||||||||            
Sbjct HICYFLYQILRGLKYIHSANVLHRDLKPSNLLINTTCDLKICDFGLARIADpehdhtgfl  178
DSSP  HHHHHHHHHHHHHHHHHHLLEELLLLLHHHEEELLLLLEEELLLLLLEELLhhhllllll


DSSP  lllLLLLLLLLHHHHLlLLLL-LLHHHHHHHHHHHHHHHLLlllllllhhhlLLLLLLLl
Query tshVVTRWYRAPELILlQENY-TNSIDIWSTGCIFAELLNMmkshinnptnrFPLFPGSs  228
ident    | ||||||||  |      | |||||| ||| || |              | |||  
Sbjct texVATRWYRAPEIML-NSKGyTKSIDIWSVGCILAEMLSN-----------RPIFPGK-  225
DSSP  lllLLLHHHLLLHHHH-LLLLlLLHHHHHHHHHHHHHHHHL-----------LLLLLLL-


DSSP  llllhhHHHHHHHHHHHHHLLLLHHHHLLLLLHHHHHHHHLLLLLLLLLHHHHLLLLLHH
Query cfphekSNRDQLNIIFNVIGTPPEEDLKCITKQEVIKYIKLFPTRDGIDLSKKYSSISKE  288
ident          |||| |    | |  ||| ||       |    |        |        
Sbjct ------HYLDQLNHILGILGSPSQEDLNCIINMKARNYLQSLPSKTKVAWAKLFPKSDSK  279
DSSP  ------LLLHHHHHHHHHHLLLLLLLLLLLLLHHHHHHHHHLLLLLLLLHHHHLLLLLHH


DSSP  HHHHHHHHLLLLLLLLLLHHHHHLLHHHLLLLLHHHHLLLLLLLLlllLLLL--LLLHHH
Query GIDLLESMLRFNAQKRITIDKALSHPYLKDVRKENLENFSTEKIIlpfDDWM--VLSETQ  346
ident   |||  || ||  ||||   || ||||        |    |             |    
Sbjct ALDLLDRMLTFNPNKRITVEEALAHPYLEQYYDPTDEPVAEEPFT---FAMEldDLPKER  336
DSSP  HHHHHHHHLLLLLLLLLLHHHHHLLHHHLLLLLHHHLLLLLLLLL---LLLLhhHLLHHH


DSSP  HHHHHHHHHHHHLLLLlllhhhl
Query LRYIFLKEIQSFHADLiipakln  369
ident |      |   |           
Sbjct LKELIFQETARFQPGV-------  352
DSSP  HHHHHHHHLHHHLLLL-------