Two-dimensional projections of protein A folding network:
(a) Calculated φ-values for the wild-type (blue line) and perturbed (black line) contact matrices are
shown together with the wild-type melting values (green line). Measured φ-values
for surface (open symbols) and core (filled symbols) residues are from (Sato S,
Religa TL, Daggett V, Fersht AR 2004 Proc Natl Acad Sci USA 101:6952-6956).
(b and c) Free energy landscapes for two contact
models. The landscapes are a projection of the folding
network onto the coordinates qN = ∑ i ≤ N/2 qi and
qC = ∑ i > N/2 qi,
where n=60. (b) The wild-type NMR structure. (c) The same structure weighted by the function
(1 + 5/rij)/2 for ξ
corresponding roughly to 2M GdmCl at 25°C (levels on the
landscapes are separated by ~0.1kT).