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Results Summary:
The query matrix is available at here. The target database is scop40.
This query finds 158 pdb hits containing 167 motifs (shown as below) spanning over 21 SCOP folds and 32 SCOP superfamilies
The ranking list of motif hits is shown as below. The information of each motif is formatted as:


    1.  1wj4     KIAA0794 protein                                                                  0.1065190
        d1wj4a_  Hypothetical protein KIAA0794
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:43-51,53-61,65-77,82-88,110-119

    2.  1wmh     Protein kinase C, iota type                                                       0.0951022
        d1wmha_  Protein kinase C, iota type
                 CAD & PB1 domains
                 beta-Grasp (ubiquitin-like)
                 A:16-24,25-33,37-50,57-64,91-98

    3.  2npt     Dual specificity mitogen-activated protein ki                                     0.0950661
        d2npta1  Mitogen activated protein kinase kinase 5, Map2k5
                 CAD & PB1 domains
                 beta-Grasp (ubiquitin-like)
                 A:17-24,26-33,40-53,58-65,101-108

    4.  1gg3     ERYTHROID MEMBRANE PROTEIN 4.1R                                                   0.0826241
        d1gg3a3  Erythroid membrane protein 4.1R
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:1-8,10-17,24-36,44-50,71-77

    5.  1ip9     BEM1 PROTEIN                                                                      0.0821625
        d1ip9a_  Bud emergence mediator Bemp1
                 CAD & PB1 domains
                 beta-Grasp (ubiquitin-like)
                 A:12-20,21-29,33-46,49-56,78-85

    6.  1h8c     FAS-ASSOCIATED FACTOR 1                                                           0.0817261
        d1h8ca_  Fas-associated factor 1, Faf1
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:4-13,15-24,27-39,45-51,72-80

    7.  2c60     HUMAN MITOGEN-ACTIVATED PROTEIN KINASE KINASE                                     0.0811359
        d2c60a1  Mitogen-activated protein kinase kinase kinase 3, MEKK 3
                 CAD & PB1 domains
                 beta-Grasp (ubiquitin-like)
                 A:44-52,53-61,65-78,81-88,115-122

    8.  1v6e     cytoskeleton-associated protein 1                                                 0.0785238
        d1v6ea_  Ubiquitin-like domain of tubulin folding cofactor B
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:7-14,20-26,30-43,48-56,78-87

    9.  1t0y     tubulin folding cofactor B                                                        0.0778028
        d1t0ya_  Ubiquitin-like domain of tubulin folding cofactor B
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:3-12,17-24,27-40,45-53,74-84

   10.  1wmh     Partitioning defective-6 homolog alpha                                            0.0773515
        d1wmhb_  Partitioning defective-6 homolog alpha, PAR-6 alpha
                 CAD & PB1 domains
                 beta-Grasp (ubiquitin-like)
                 B:14-23,24-33,38-51,57-64,87-94

   11.  1h4r     MERLIN                                                                            0.0769704
        d1h4ra3  Merlin
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:20-29,30-39,42-55,61-69,91-99

   12.  1lfd     RALGDS                                                                            0.0751597
        d1lfda_  Ral guanosine-nucleotide exchange factor, RalGDS
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:15-24,31-38,41-54,63-69,93-99

   13.  1zkh     Splicing factor 3 subunit 1                                                       0.0745212
        d1zkha1  Splicing factor 3 subunit 1, C-terminal domain
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:1-10,20-29,33-46,51-57,74-83

   14.  1c1y     PROTO-ONKOGENE SERINE/THREONINE PROTEIN KINAS                                     0.0738934
        d1c1yb_  c-Raf1 RBD
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 B:56-63,65-72,77-90,96-103,124-130

   15.  1ttn     dendritic cell-derived ubiquitin-like protein                                     0.0730087
        d1ttna1  Dendritic cell-derived ubiquitin-like protein
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:23-31,33-41,45-58,64-69,89-94

   16.  1q27     Putative Nudix hydrolase DR0079                                                   0.0726903
        d1q27a_  Hypothetical protein DR0079
                 Nudix
                 Nudix
                 A:34-44,67-71,77-91,98-106,114-123

   17.  1xdy     Bacterial Sulfite Oxidase                                                         0.0725847
        d1xdya_  Bacterial sulfite oxidase YedY
                 Oxidoreductase molybdopterin-binding domain
                 Oxidoreductase molybdopterin-binding domain
                 A:68-74,79-84,116-125,131-138,208-216

   18.  1l7y     HYPOTHETICAL PROTEIN ZK652.3                                                      0.0723275
        d1l7ya_  Hypothetical protein zk652.3
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:13-20,26-34,38-51,56-62,82-89

   19.  1mg8     Parkin                                                                            0.0717566
        d1mg8a_  Ubiquitin-like domain of parkin
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:2-10,13-20,24-37,42-48,66-74

   20.  1wgr     Growth factor receptor-bound protein 7                                            0.0715717
        d1wgra_  Growth factor receptor-bound protein 7, GRB-7
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:9-17,19-27,31-41,51-59,84-91

   21.  2cr5     Reproduction 8                                                                    0.0710076
        d2cr5a1  UBX domain-containing protein 6 (Reproduction 8)
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:22-31,33-42,45-57,62-68,89-98

   22.  1acc     ANTHRAX PROTECTIVE ANTIGEN                                                        0.0701557
        d1acca_  Anthrax protective antigen
                 Anthrax protective antigen
                 Anthrax protective antigen
                 A:488-495,498-506,522-532,549-555,587-594

   23.  1c9f     CASPASE-ACTIVATED DNASE                                                           0.0698178
        d1c9fa_  Caspase-activated DNase (CAD), DFF40, N-terminal domain
                 CAD & PB1 domains
                 beta-Grasp (ubiquitin-like)
                 A:8-15,20-27,28-41,46-53,68-77

   24.  1vjk     molybdopterin converting factor, subunit 1                                        0.0697010
        d1vjka_  Molybdopterin synthase subunit MoaD
                 MoaD/ThiS
                 beta-Grasp (ubiquitin-like)
                 A:1-9,19-26,30-43,59-65,78-85

   25.  1wgy     Rap guanine nucleotide exchange factor 5                                          0.0694203
        d1wgya_  Rap guanine nucleotide exchange factor 5, RapGEF5
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:10-17,19-26,31-44,49-57,79-86

   26.  2faz     Ubiquitin-like containing PHD and RING finger                                     0.0692953
        d2faza1  Ubiquitin-like PHD and RING finger domain-containing protein 1
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:1-8,12-18,24-37,42-48,65-74

   27.  2igd     PROTEIN G                                                                         0.0680180
        d2igda_  Immunoglobulin-binding protein G, different constituent domains
                 Immunoglobulin-binding domains
                 beta-Grasp (ubiquitin-like)
                 A:5-15,16-26,27-43,47-53,54-61

   28.  1v8c     MoaD related protein                                                              0.0679348
        d1v8ca1  MoaD-related protein, N-terminal domain
                 MoaD/ThiS
                 beta-Grasp (ubiquitin-like)
                 A:1-6,16-20,24-37,52-58,76-83

   29.  1mg4     DOUBLECORTIN-LIKE KINASE (N-TERMINAL DOMAIN)                                      0.0676361
        d1mg4a_  Doublecortin-like kinase Dclk
                 Doublecortin (DC)
                 beta-Grasp (ubiquitin-like)
                 A:56-64,71-77,83-96,106-111,125-133

   30.  1v5o     1700011N24Rik protein                                                             0.0673310
        d1v5oa_  1700011n24rik protein
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:7-18,19-29,33-46,51-57,75-84

   31.  2bkf     ZINC-FINGER PROTEIN NBR1 (NEXT TO BREAST CANC                                     0.0667780
        d2bkfa1  Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
                 CAD & PB1 domains
                 beta-Grasp (ubiquitin-like)
                 A:3-12,13-22,27-40,43-51,76-85

   32.  1vkb     hypothetical protein                                                              0.0663350
        d1vkba_  Hypothetical protein LOC223267
                 BtrG-like
                 BtrG-like
                 A:1-7,59-71,72-83,88-96,108-118

   33.  1wm3     Ubiquitin-like protein SMT3B                                                      0.0663262
        d1wm3a_  SUMO-2
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:17-25,27-35,39-52,58-63,80-88

   34.  2a9d     Sulfite Oxidase                                                                   0.0662427
        d2a9da2  Sulfite oxidase, middle catalytic domain
                 Oxidoreductase molybdopterin-binding domain
                 Oxidoreductase molybdopterin-binding domain
                 A:152-156,162-166,218-227,236-243,302-310

   35.  1z2m     interferon, alpha-inducible protein (clone IF                                     0.0656383
        d1z2ma2  Interferon-induced 15 kDa protein
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:81-89,91-99,103-116,121-127,144-153

   36.  1wju     NEDD8 ultimate buster-1                                                           0.0655437
        d1wjua_  NEDD8 ultimate buster-1, NUB1
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:15-22,31-37,41-54,59-65,82-91

   37.  1z2m     interferon, alpha-inducible protein (clone IF                                     0.0655437
        d1z2ma1  Interferon-induced 15 kDa protein
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:3-9,13-19,24-37,42-49,67-76

   38.  1twf     DNA-directed RNA polymerase II 140 kDa polype                                     0.0655308
        d1twfb_  RBP2
                 beta and beta-prime subunits of DNA dependent RNA-polymerase
                 beta and beta-prime subunits of DNA dependent RNA-polymerase
                 B:577-583,584-591,592-607,613-620,621-628

   39.  1et9     SUPERANTIGEN SPE-H                                                                0.0649308
        d1et9a2  Streptococcal superantigen Spe-H
                 Superantigen toxins, C-terminal domain
                 beta-Grasp (ubiquitin-like)
                 A:97-109,110-122,126-143,154-162,196-204

   40.  1x1m     Ubiquitin-like protein SB132                                                      0.0647878
        d1x1ma1  Ubiquitin-like protein 7
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:13-20,27-32,46-59,67-73,90-99

   41.  1wxv     BAG-family molecular chaperone regulator-1                                        0.0638529
        d1wxva1  Bag-family molecular chaperone regulator-1
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:7-15,16-24,33-46,52-57,76-83

   42.  1jal     YchF protein                                                                      0.0627274
        d1jala2  YchF GTP-binding protein, C-terminal domain
                 TGS-like
                 beta-Grasp (ubiquitin-like)
                 A:279-287,288-296,300-310,316-323,353-361

   43.  2fug     NADH-quinone oxidoreductase chain 3                                               0.0626370
        d2fug33  Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain
                 2Fe-2S ferredoxin-like
                 beta-Grasp (ubiquitin-like)
                 3:1-7,8-14,18-27,48-54,89-95

   44.  2ghf     Zinc fingers and homeoboxes protein 1                                             0.0626017
        d2ghfa1  Zinc fingers and homeoboxes protein 1, ZHX1
                 C2H2 and C2HC zinc fingers
                 C2H2 and C2HC zinc fingers
                 A:50-55,56-60,62-75,79-88,89-98

   45.  1wxq     GTP-binding protein                                                               0.0623403
        d1wxqa2  GTP-binding protein PH0525
                 TGS-like
                 beta-Grasp (ubiquitin-like)
                 A:320-325,341-345,350-360,366-372,386-394

   46.  1wgd     Homocysteine-responsive endoplasmic reticulum                                     0.0618774
        d1wgda_  Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:7-13,21-27,31-44,51-57,77-85

   47.  1wx8     RIKEN cDNA 4931431F19                                                             0.0615953
        d1wx8a1  4931431F19Rik
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:16-25,26-35,38-51,56-62,79-88

   48.  1wxa     Afadin                                                                            0.0614628
        d1wxaa1  Afadin
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:9-16,25-31,35-48,57-65,98-107

   49.  1lm8     ELONGIN B                                                                         0.0614515
        d1lm8b_  Elongin B
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 B:1-10,11-20,23-36,41-47,72-80

   50.  2z0d     Microtubule-associated proteins 1A/1B light c                                     0.0613234
        d2z0db1  Microtubule-associated proteins 1A/1B light chain 3B
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 B:29-38,50-56,59-72,79-84,107-115

   51.  1f2r     INHIBITOR OF CASPASE-ACTIVATED DNASE                                              0.0609088
        d1f2ri_  Inhibitor of caspase-activated DNase (ICAD), DFF45, N-terminal domain
                 CAD & PB1 domains
                 beta-Grasp (ubiquitin-like)
                 I:18-25,31-37,38-51,59-65,81-89

   52.  1se9     ubiquitin family                                                                  0.0606244
        d1se9a_  Hypothetical protein At3g01050
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:7-15,17-26,30-43,56-61,84-92

   53.  1enf     ENTEROTOXIN H                                                                     0.0601974
        d1enfa2  Staphylococcal enterotoxin H, SEH
                 Superantigen toxins, C-terminal domain
                 beta-Grasp (ubiquitin-like)
                 A:107-117,118-129,134-151,160-169,203-213

   54.  1xlq     Putidaredoxin                                                                     0.0600060
        d1xlqa1  2Fe-2S ferredoxin
                 2Fe-2S ferredoxin-like
                 beta-Grasp (ubiquitin-like)
                 A:1-8,10-17,22-31,48-53,95-102

   55.  1wx9     HLA-B associated transcript-3 isoform b                                           0.0598982
        d1wx9a1  Large proline-rich protein BAT3
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:8-15,17-24,29-42,47-53,70-78

   56.  1v30     Hypothetical UPF0131 protein PH0828                                               0.0597657
        d1v30a_  Hypothetical protein PH0828
                 BtrG-like
                 BtrG-like
                 A:8-13,55-64,65-75,80-89,90-99

   57.  2bwf     UBIQUITIN-LIKE PROTEIN DSK2                                                       0.0597514
        d2bwfa1  DSK2
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:2-10,11-19,23-36,41-47,64-73

   58.  2fb1     conserved hypothetical protein                                                    0.0595628
        d2fb1a2  Hypothetical protein BT0354, N-terminal domain
                 Nudix
                 Nudix
                 A:12-24,46-50,55-69,74-82,92-101

   59.  2c5l     PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C PLC                                     0.0593542
        d2c5lc1  Phospholipase C-epsilon-1
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 C:2135-2143,2149-2157,2160-2173,2186-2195,2227-2236

   60.  2cs4     Protein C12orf2                                                                   0.0593225
        d2cs4a1  Ras association domain-containing protein 8
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:8-15,16-23,29-42,46-54,80-87

   61.  1gnu     GABARAP                                                                           0.0592839
        d1gnua_  GABA(A) receptor associated protein GABARAP
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:27-36,47-53,56-69,76-81,103-111

   62.  1tke     Threonyl-tRNA synthetase                                                          0.0592347
        d1tkea1  Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain
                 TGS-like
                 beta-Grasp (ubiquitin-like)
                 A:1-7,9-15,19-28,36-41,53-61

   63.  2inc     TouB protein                                                                      0.0591331
        d2incc1  Toluene, o-xylene monooxygenase oxygenase subunit TouB
                 TmoB-like
                 beta-Grasp (ubiquitin-like)
                 C:3-11,16-22,26-39,49-57,76-85

   64.  1oey     NEUTROPHIL CYTOSOL FACTOR 2                                                       0.0585172
        d1oeya_  Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)
                 CAD & PB1 domains
                 beta-Grasp (ubiquitin-like)
                 A:352-358,360-366,371-384,391-395,420-427

   65.  1wgh     ubiquitin-like 3                                                                  0.0579509
        d1wgha_  Ubiquitin-like protein 3, Ubl3
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:16-24,26-34,38-51,66-70,89-96

   66.  2guf     Vitamin B12 transporter btuB                                                      0.0579072
        d2gufa1  Outer membrane cobalamin transporter BtuB
                 Porins
                 Transmembrane beta-barrels
                 A:75-81,82-85,91-100,105-114,122-131

   67.  1yqb     Ubiquilin 3                                                                       0.0573954
        d1yqba1  Ubiquilin-3
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:20-29,30-39,42-55,60-66,83-92

   68.  1l5p     ferredoxin                                                                        0.0565899
        d1l5pa_  2Fe-2S ferredoxin
                 2Fe-2S ferredoxin-like
                 beta-Grasp (ubiquitin-like)
                 A:1-8,9-16,21-30,47-54,87-93

   69.  2fug     NADH-quinone oxidoreductase chain 1                                               0.0564653
        d2fug13  NADH-quinone oxidoreductase chain 1, Nqo1
                 Nqo1 middle domain-like
                 beta-Grasp (ubiquitin-like)
                 1:250-256,261-266,271-281,286-293,325-333

   70.  1m94     Protein YNR032c-a                                                                 0.0564111
        d1m94a_  Ubiquitin-like modifier protein hub1
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:1-9,11-19,23-36,41-47,64-73

   71.  1wjn     Tubulin-folding protein TBCE                                                      0.0562019
        d1wjna_  Tubulin-folding protein TbcE
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:8-17,24-31,34-47,52-58,83-92

   72.  2al6     Focal adhesion kinase 1                                                           0.0561041
        d2al6a3  Focal adhesion kinase 1
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:35-41,52-58,63-76,82-90,119-127

   73.  1k8r     Protein kinase byr2                                                               0.0559097
        d1k8rb_  Protein kinase byr2
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 B:71-77,81-87,90-103,109-117,142-148

   74.  3seb     STAPHYLOCOCCAL ENTEROTOXIN B                                                      0.0558659
        d3seba2  Staphylococcal enterotoxin B, SEB
                 Superantigen toxins, C-terminal domain
                 beta-Grasp (ubiquitin-like)
                 A:129-139,140-151,156-173,181-192,227-237

   75.  1vhz     ADP compounds hydrolase nudE                                                      0.0557476
        d1vhza_  ADP compounds hydrolase NudE
                 Nudix
                 Nudix
                 A:48-57,78-82,87-101,105-115,122-131

   76.  1q40     MRNA TRANSPORT REGULATOR Mtr2                                                     0.0550570
        d1q40a_  mRNA transport regulator MTR2
                 NTF2-like
                 Cystatin-like
                 A:50-55,56-59,66-79,139-154,162-173

   77.  1b25     PROTEIN (FORMALDEHYDE FERREDOXIN OXIDOREDUCTA                                     0.0550025
        d1b25a2  Formaldehyde ferredoxin oxidoreductase
                 Aldehyde ferredoxin oxidoreductase, N-terminal domain
                 Aldehyde ferredoxin oxidoreductase, N-terminal domain
                 A:6-14,15-23,33-47,57-62,107-114

   78.  1oey     NEUTROPHIL CYTOSOL FACTOR 4                                                       0.0549451
        d1oeyj_  Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase)
                 CAD & PB1 domains
                 beta-Grasp (ubiquitin-like)
                 J:238-247,248-257,266-279,282-290,323-329

   79.  1vk6     NADH pyrophosphatase                                                              0.0544870
        d1vk6a2  NADH pyrophosphatase
                 Nudix
                 Nudix
                 A:127-138,156-161,166-180,185-195,198-207

   80.  1xd3     UBC protein                                                                       0.0534674
        d1xd3b_  Ubiquitin
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 B:1-8,10-16,22-35,40-46,63-72

   81.  1doi     2FE-2S FERREDOXIN                                                                 0.0529942
        d1doia_  2Fe-2S ferredoxin
                 2Fe-2S ferredoxin-like
                 beta-Grasp (ubiquitin-like)
                 A:1-8,36-42,47-56,71-77,109-116

   82.  1v5t     8430435I17Rik Protein                                                             0.0528178
        d1v5ta_  8430435i17rik protein
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:9-15,16-22,29-42,48-52,74-81

   83.  1uel     UV excision repair protein RAD23 homolog B                                        0.0524411
        d1uela_  Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:1-8,10-17,22-35,43-49,69-75

   84.  1i7h     FERREDOXIN                                                                        0.0518081
        d1i7ha_  Adrenodoxin-like ferredoxin
                 2Fe-2S ferredoxin-like
                 beta-Grasp (ubiquitin-like)
                 A:2-8,14-21,26-35,51-58,94-100

   85.  1e7u     PHOSPHATIDYLINOSITOL 3-KINASE CATALYTIC SUBUN                                     0.0517947
        d1e7ua3  Phoshoinositide 3-kinase (PI3K)
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:218-227,228-237,240-253,270-275,303-309

   86.  1b25     PROTEIN (FORMALDEHYDE FERREDOXIN OXIDOREDUCTA                                     0.0517438
        d1b25a2  Formaldehyde ferredoxin oxidoreductase
                 Aldehyde ferredoxin oxidoreductase, N-terminal domain
                 Aldehyde ferredoxin oxidoreductase, N-terminal domain
                 A:118-125,126-133,140-153,156-161,195-203

   87.  1we6     splicing factor, putative                                                         0.0517143
        d1we6a_  Splicing factor 3 subunit 1, C-terminal domain
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:27-34,42-48,53-66,71-76,97-103

   88.  1fm0     MOLYBDOPTERIN CONVERTIN FACTOR, SUBUNIT 1                                         0.0515677
        d1fm0d_  Molybdopterin synthase subunit MoaD
                 MoaD/ThiS
                 beta-Grasp (ubiquitin-like)
                 D:1-7,17-22,27-40,51-56,69-76

   89.  2a6t     SPAC19A8.12                                                                       0.0515464
        d2a6ta2  mRNA decapping enzyme Dcp2p catalytic domain
                 Nudix
                 Nudix
                 A:97-105,126-130,135-149,160-167,168-178

   90.  1wh3     59 kDa 2'-5'-oligoadenylate synthetase like p                                     0.0512374
        d1wh3a_  2'-5'-oligoadenylate synthetase-like protein, OASL
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:7-15,17-25,29-42,47-51,70-79

   91.  1hzt     ISOPENTENYL DIPHOSPHATE DELTA-ISOMERASE                                           0.0511065
        d1hzta_  Isopentenyl diphosphate isomerase
                 Nudix
                 Nudix
                 A:31-41,65-69,75-88,91-109,111-126

   92.  1v97     Xanthine dehydrogenase                                                            0.0511012
        d1v97a2  Xanthine oxidase, N-terminal domain
                 2Fe-2S ferredoxin-like
                 beta-Grasp (ubiquitin-like)
                 A:5-11,12-18,25-35,51-60,81-87

   93.  1wia     hypothetical ubiquitin-like protein (RIKEN cD                                     0.0508285
        d1wiaa_  Ubiquitin-like protein bab25500 (2010008E23Rik)
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:162-170,172-180,184-194,199-205,224-232

   94.  1m4v     SET3, superantigen-like protein                                                   0.0506868
        d1m4va2  Superantigen-like protein SET3
                 Superantigen toxins, C-terminal domain
                 beta-Grasp (ubiquitin-like)
                 A:106-118,119-131,136-153,162-169,195-203

   95.  1iry     hMTH1                                                                             0.0506663
        d1irya_  7,8-dihydro-8-oxoguanine triphosphatase Hmth1
                 Nudix
                 Nudix
                 A:3-12,34-39,44-58,64-75,79-88

   96.  1v1o     EXOTOXIN 1                                                                        0.0506406
        d1v1oa2  Exotoxin 1 (SET1, Superantigen-like protein 7)
                 Superantigen toxins, C-terminal domain
                 beta-Grasp (ubiquitin-like)
                 A:112-125,126-140,143-160,168-176,202-212

   97.  1v86     DNA segment, Chr 7, Wayne State University 12                                     0.0503449
        d1v86a_  hypothetical D7wsu128e protein
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:17-25,26-34,38-51,59-61,78-84

   98.  2bye     PHOSPHOLIPASE C, EPSILON 1                                                        0.0494878
        d2byea1  Phospholipase C-epsilon-1
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:8-16,23-30,33-43,54-61,101-108

   99.  1ryj     unknown                                                                           0.0494756
        d1ryja_  Hypothetical protein MTH1743
                 MoaD/ThiS
                 beta-Grasp (ubiquitin-like)
                 A:6-14,17-25,28-37,43-48,61-68

  100.  1yel     At1g16640                                                                         0.0493535
        d1yela1  At1g16640
                 DNA-binding pseudobarrel domain
                 DNA-binding pseudobarrel domain
                 A:38-45,47-58,66-75,80-88,90-98

  101.  2pia     PHTHALATE DIOXYGENASE REDUCTASE                                                   0.0492053
        d2piaa3  Phthalate dioxygenase reductase, C-terminal domain
                 2Fe-2S ferredoxin-like
                 beta-Grasp (ubiquitin-like)
                 A:236-244,245-253,256-265,280-286,315-320

  102.  1n6z     Hypothetical 12.3 kDa protein in ZDS2-URA5 in                                     0.0488926
        d1n6za_  Hypothetical protein Yml108w
                 Hypothetical protein Yml108w
                 Hypothetical protein Yml108w
                 A:6-14,34-44,49-69,72-78,80-86

  103.  1czp     FERREDOXIN I                                                                      0.0484051
        d1czpa_  2Fe-2S ferredoxin
                 2Fe-2S ferredoxin-like
                 beta-Grasp (ubiquitin-like)
                 A:1-11,12-22,25-34,49-55,86-92

  104.  2b0v     NUDIX hydrolase                                                                   0.0481325
        d2b0va1  Hypothetical protein NE0184
                 Nudix
                 Nudix
                 A:5-13,36-40,45-59,65-77,78-90

  105.  1wf9     NPL4 family protein                                                               0.0477076
        d1wf9a1  NPL4-like protein 1
                 Ubiquitin-like
                 beta-Grasp (ubiquitin-like)
                 A:8-15,16-23,29-42,47-52,85-94

  106.  1ur4     GALACTANASE                                                                       0.0476508
        d1ur4a_  Beta-1,4-galactanase
                 (Trans)glycosidases
                 TIM beta/alpha-barrel
                 A:43-46,48-51,52-61,374-377,379-382

  107.  1nyr     threonyl-tRNA synthetase 1                                                        0.0466461
        d1nyra2  Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain
                 TGS-like
                 beta-Grasp (ubiquitin-like)
                 A:4-9,11-16,21-31,39-43,56-62

  108.  1vky     S-adenosylmethionine:tRNA ribosyltransferase-                                     0.0465723
        d1vkya_  Queuosine biosynthesis protein queA
                 QueA-like
                 QueA-like
                 A:26-34,35-43,42-51,285-291,330-335

  109.  2fkb     Putative Nudix hydrolase yfcD                                                     0.0463736
        d2fkba1  Hypothetical protein YfcD
                 Nudix
                 Nudix
                 A:36-47,70-75,80-94,100-111,112-124

  110.  2fug     NADH-quinone oxidoreductase chain 1                                               0.0461106
        d2fug13  NADH-quinone oxidoreductase chain 1, Nqo1
                 Nqo1 middle domain-like
                 beta-Grasp (ubiquitin-like)
                 1:250-256,261-266,271-281,292-294,325-333

  111.  2fvv     Diphosphoinositol polyphosphate phosphohydrol                                     0.0460702
        d2fvva1  Diphosphoinositol polyphosphate phosphohydrolase
                 Nudix
                 Nudix
                 A:16-27,49-53,58-72,76-88,89-99

  112.  1f3y     DIADENOSINE 5',5'''-P1,P4-TETRAPHOSPHATE HYDR                                     0.0459664
        d1f3ya_  Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
                 Nudix
                 Nudix
                 A:13-24,43-47,52-66,69-76,102-113

  113.  1feh     PROTEIN (PERIPLASMIC HYDROGENASE 1)                                               0.0458905
        d1feha2  Fe-only hydrogenase, N-terminal domain
                 2Fe-2S ferredoxin-like
                 beta-Grasp (ubiquitin-like)
                 A:1-7,8-14,18-27,49-54,68-74

  114.  1viu     ADP-ribose pyrophosphatase                                                        0.0457917
        d1viua_  ADP-ribose pyrophosphatase homologue YffH
                 Nudix
                 Nudix
                 A:45-56,84-88,92-106,112-120,124-136

  115.  1urj     MAJOR DNA-BINDING PROTEIN                                                         0.0457687
        d1urja_  Infected cell protein 8, ICP8
                 Viral ssDNA binding protein
                 Viral ssDNA binding protein
                 A:912-923,959-967,968-975,975-988,1021-1031

  116.  1fob     BETA-1,4-GALACTANASE                                                              0.0456267
        d1foba_  Beta-1,4-galactanase
                 (Trans)glycosidases
                 TIM beta/alpha-barrel
                 A:22-25,27-30,31-40,316-320,321-325

  117.  1feu     50S RIBOSOMAL PROTEIN L25                                                         0.0455332
        d1feua_  Ribosomal protein TL5 (general stress protein CTC)
                 Ribosomal protein L25-like
                 Ribosomal protein L25-like
                 A:23-31,32-40,40-52,68-77,82-91

  118.  1f3y     DIADENOSINE 5',5'''-P1,P4-TETRAPHOSPHATE HYDR                                     0.0449297
        d1f3ya_  Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
                 Nudix
                 Nudix
                 A:13-24,43-47,52-66,79-83,102-113

  119.  1wgk     RIKEN cDNA 2900073H19 protein                                                     0.0448974
        d1wgka_  C9orf74 homolog
                 MoaD/ThiS
                 beta-Grasp (ubiquitin-like)
                 A:8-19,30-40,44-58,73-79,96-104

  120.  1tif     TRANSLATION INITIATION FACTOR 3                                                   0.0448793
        d1tifa_  Translation initiation factor IF3, N-terminal domain
                 Translation initiation factor IF3, N-terminal domain
                 beta-Grasp (ubiquitin-like)
                 A:15-21,23-30,30-42,43-50,55-61

  121.  1n62     Carbon monoxide dehydrogenase small chain                                         0.0448672
        d1n62a2  Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain
                 2Fe-2S ferredoxin-like
                 beta-Grasp (ubiquitin-like)
                 A:3-11,12-20,24-34,50-55,71-76

  122.  1rrq     MutY                                                                              0.0448229
        d1rrqa2  Adenine glycosylase MutY, C-terminal domain
                 Nudix
                 Nudix
                 A:234-247,269-273,277-287,298-308,309-323

  123.  2bs2     QUINOL-FUMARATE REDUCTASE IRON-SULFUR SUBUNIT                                     0.0443459
        d2bs2b2  Fumarate reductase iron-sulfur protein, N-terminal domain
                 2Fe-2S ferredoxin-like
                 beta-Grasp (ubiquitin-like)
                 B:3-13,19-30,35-49,65-70,87-93

  124.  1zps     Phosphoribosyl-AMP cyclohydrolase                                                 0.0443262
        d1zpsa1  Phosphoribosyl-AMP cyclohydrolase HisI
                 HisI-like
                 HisI-like
                 A:23-32,33-43,43-54,75-85,89-99

  125.  1g0s     HYPOTHETICAL 23.7 KDA PROTEIN IN ICC-TOLC INT                                     0.0442733
        d1g0sa_  ADP-ribose pyrophosphatase
                 Nudix
                 Nudix
                 A:57-68,94-99,104-118,121-132,136-148

  126.  2azw     MutT/nudix family protein                                                         0.0442028
        d2azwa1  Hypothetical protein EF1141
                 Nudix
                 Nudix
                 A:15-25,46-50,55-69,73-89,90-105

  127.  2fml     MutT/nudix family protein                                                         0.0440937
        d2fmla2  Hypothetical protein EF2700, N-terminal domain
                 Nudix
                 Nudix
                 A:38-52,75-79,84-98,106-113,122-132

  128.  1xhs     Hypothetical UPF0131 protein ytfP                                                 0.0439174
        d1xhsa_  Hypothetical protein YtfP
                 BtrG-like
                 BtrG-like
                 A:1-6,48-59,59-72,76-84,85-93

  129.  1wid     DNA-binding protein RAV1                                                          0.0435996
        d1wida_  DNA-binding protein RAV1
                 DNA-binding pseudobarrel domain
                 DNA-binding pseudobarrel domain
                 A:225-233,235-245,255-265,270-277,283-290

  130.  1nek     Succinate dehydrogenase iron-sulfur protein                                       0.0434499
        d1nekb2  Succinate dehydogenase iron-sulfur protein, N-terminal domain
                 2Fe-2S ferredoxin-like
                 beta-Grasp (ubiquitin-like)
                 B:1-10,18-27,34-47,63-68,88-93

  131.  1krh     Benzoate 1,2-Dioxygenase Reductase                                                0.0433576
        d1krha3  Benzoate dioxygenase reductase, N-terminal domain
                 2Fe-2S ferredoxin-like
                 beta-Grasp (ubiquitin-like)
                 A:2-11,13-22,25-34,49-55,89-95

  132.  1pun     Mutator mutT protein                                                              0.0431425
        d1puna_  Nucleoside triphosphate pyrophosphorylase (MutT)
                 Nudix
                 Nudix
                 A:1-14,35-38,45-59,65-76,77-89

  133.  1rm6     4-hydroxybenzoyl-CoA reductase gamma subunit                                      0.0431351
        d1rm6c2  4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain
                 2Fe-2S ferredoxin-like
                 beta-Grasp (ubiquitin-like)
                 C:1-10,11-20,23-33,49-54,69-75

  134.  1qqr     STREPTOKINASE DOMAIN B                                                            0.0424863
        d1qqra_  Streptokinase
                 Staphylokinase/streptokinase
                 beta-Grasp (ubiquitin-like)
                 A:157-169,182-189,195-212,213-227,266-279

  135.  1wpg     Sarcoplasmic/endoplasmic reticulum calcium AT                                     0.0422226
        d1wpga3  Calcium ATPase
                 Metal cation-transporting ATPase, ATP-binding domain N
                 Metal cation-transporting ATPase, ATP-binding domain N
                 A:526-531,532-537,538-555,560-568,591-599

  136.  1nqz     CoA pyrophosphatase (MutT/nudix family protei                                     0.0419445
        d1nqza_  Coenzyme A pyrophosphatase
                 Nudix
                 Nudix
                 A:33-45,69-73,78-92,98-110,112-123

  137.  2b06     MutT/nudix family protein                                                         0.0419287
        d2b06a1  Hypothetical protein SP1235 (spr1115)
                 Nudix
                 Nudix
                 A:4-19,41-45,50-64,68-80,81-94

  138.  1l4d     STREPTOKINASE                                                                     0.0417519
        d1l4db_  Streptokinase
                 Staphylokinase/streptokinase
                 beta-Grasp (ubiquitin-like)
                 B:15-27,37-42,75-91,97-104,132-146

  139.  2sak     STAPHYLOKINASE                                                                    0.0415282
        d2saka_  Staphylokinase
                 Staphylokinase/streptokinase
                 beta-Grasp (ubiquitin-like)
                 A:22-34,36-49,56-72,76-82,122-135

  140.  1rrq     MutY                                                                              0.0413189
        d1rrqa2  Adenine glycosylase MutY, C-terminal domain
                 Nudix
                 Nudix
                 A:234-247,269-273,277-287,292-298,309-323

  141.  1vle     Pyrogallol hydroxytransferase small subunit                                       0.0411879
        d1vlen2  Transhydroxylase beta subunit, BthL, N-terminal domain
                 4Fe-4S ferredoxins
                 Ferredoxin-like
                 N:2-10,153-160,160-172,173-175,185-190

  142.  1vcd     Ndx1                                                                              0.0406372
        d1vcda1  AP6A hydrolase Ndx1
                 Nudix
                 Nudix
                 A:1-12,29-32,38-52,58-69,71-84

  143.  1rya     GDP-mannose mannosyl hydrolase                                                    0.0406108
        d1ryaa_  GDP-mannose mannosyl hydrolase NudD
                 Nudix
                 Nudix
                 A:17-28,49-53,58-72,80-92,99-112

  144.  1ty0     putative exotoxin (superantigen)                                                  0.0404727
        d1ty0a2  Streptococcal pyrogenic exotoxin Spe-J
                 Superantigen toxins, C-terminal domain
                 beta-Grasp (ubiquitin-like)
                 A:104-111,112-120,130-147,156-165,200-210

  145.  1kqf     FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, IRO                                     0.0397852
        d1kqfb1  Formate dehydrogenase N, iron-sulfur (beta) subunit
                 4Fe-4S ferredoxins
                 Ferredoxin-like
                 B:30-36,183-188,188-207,210-215,223-230

  146.  1hz6     PROTEIN L                                                                         0.0395679
        d1hz6a_  Immunoglobulin light chain-binding domain of protein L
                 Immunoglobulin-binding domains
                 beta-Grasp (ubiquitin-like)
                 A:3-13,15-25,25-45,45-53,56-64

  147.  1q40     mRNA export factor MEX67                                                          0.0393856
        d1q40b_  NTF2-like domain of mRNA export factor MEX67
                 NTF2-like
                 Cystatin-like
                 B:335-342,385-388,388-400,471-484,488-501

  148.  1u20     U8 snoRNA-binding protein X29                                                     0.0390701
        d1u20a1  U8 snorna-binding protein x29
                 Nudix
                 Nudix
                 A:32-49,71-75,81-95,107-116,118-129

  149.  1h0h     FORMATE DEHYDROGENASE (SMALL SUBUNIT)                                             0.0388259
        d1h0hb_  Tungsten containing formate dehydrogenase, small subunit
                 4Fe-4S ferredoxins
                 Ferredoxin-like
                 B:2-8,160-165,165-185,186-190,196-203

  150.  1jkg     TAP                                                                               0.0385639
        d1jkgb_  NTF2-like domain of Tip associating protein, TAP
                 NTF2-like
                 Cystatin-like
                 B:414-420,455-458,458-470,507-523,525-539

  151.  1sjy     MutT/nudix family protein                                                         0.0385356
        d1sjya_  Hypothetical protein DR1025
                 Nudix
                 Nudix
                 A:12-23,48-52,57-71,75-88,90-103

  152.  1x51     A/G-specific adenine DNA glycosylase                                              0.0381083
        d1x51a1  A/G-specific adenine DNA glycosylase
                 Nudix
                 Nudix
                 A:18-31,54-58,61-78,85-96,97-109

  153.  1nww     Limonene-1,2-epoxide hydrolase                                                    0.0376067
        d1nwwa_  Limonene-1,2-epoxide hydrolase
                 NTF2-like
                 Cystatin-like
                 A:51-56,60-63,63-78,108-124,125-134

  154.  1mp2     ADPR pyrophosphatase                                                              0.0370261
        d1mp2a_  ADP-ribose pyrophosphatase
                 Nudix
                 Nudix
                 A:34-53,75-79,85-99,103-113,117-129

  155.  1vcd     Ndx1                                                                              0.0369918
        d1vcda1  AP6A hydrolase Ndx1
                 Nudix
                 Nudix
                 A:1-12,29-32,38-52,54-58,71-84

  156.  2sak     STAPHYLOKINASE                                                                    0.0364458
        d2saka_  Staphylokinase
                 Staphylokinase/streptokinase
                 beta-Grasp (ubiquitin-like)
                 A:22-34,36-49,56-72,86-95,122-135

  157.  1ktg     Diadenosine Tetraphosphate Hydrolase                                              0.0363201
        d1ktga_  Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
                 Nudix
                 Nudix
                 A:2-15,34-39,44-58,70-79,80-93

  158.  1v8y     ADP-ribose pyrophosphatase                                                        0.0362555
        d1v8ya_  ADP-ribose pyrophosphatase
                 Nudix
                 Nudix
                 A:27-41,65-69,74-88,92-101,105-117

  159.  1tuh     hypothetical protein EGC068                                                       0.0361193
        d1tuha_  Hypothetical protein egc068 from a soil-derived mobile gene cassette
                 NTF2-like
                 Cystatin-like
                 A:51-56,62-67,67-83,113-128,129-139

  160.  1sjy     MutT/nudix family protein                                                         0.0355227
        d1sjya_  Hypothetical protein DR1025
                 Nudix
                 Nudix
                 A:12-23,48-52,57-71,73-75,90-103

  161.  1s5a     Hypothetical protein yesE                                                         0.0354862
        d1s5aa_  Hypothetical protein YesE
                 NTF2-like
                 Cystatin-like
                 A:36-41,49-53,53-68,100-116,117-126

  162.  2a15     HYPOTHETICAL PROTEIN Rv0760c                                                      0.0351927
        d2a15a1  Hypothetical protein Rv0760c
                 NTF2-like
                 Cystatin-like
                 A:36-40,53-56,56-72,102-117,119-128

  163.  1igr     PROTEIN (INSULIN-LIKE GROWTH FACTOR RECEPTOR                                      0.0347923
        d1igra3  Type 1 insulin-like growth factor receptor Cys-rich domain
                 Growth factor receptor domain
                 Knottins (small inhibitors, toxins, lectins)
                 A:238-242,244-248,248-255,266-270,271-275

  164.  1ktg     Diadenosine Tetraphosphate Hydrolase                                              0.0335604
        d1ktga_  Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
                 Nudix
                 Nudix
                 A:2-15,34-39,44-58,63-66,80-93

  165.  1ut9     CELLULOSE 1,4-BETA-CELLOBIOSIDASE                                                 0.0331818
        d1ut9a1  Cellulose 1,4-beta-cellobiosidase CbhA
                 Six-hairpin glycosidases
                 alpha/alpha toroid
                 A:353-359,373-377,434-452,466-472,486-493

  166.  1q3i     Na,K-ATPase                                                                       0.0331422
        d1q3ia_  Sodium/potassium-transporting ATPase alpha chain
                 Metal cation-transporting ATPase, ATP-binding domain N
                 Metal cation-transporting ATPase, ATP-binding domain N
                 A:512-517,518-523,524-542,543-553,576-587

  167.  1ut9     CELLULOSE 1,4-BETA-CELLOBIOSIDASE                                                 0.0314525
        d1ut9a1  Cellulose 1,4-beta-cellobiosidase CbhA
                 Six-hairpin glycosidases
                 alpha/alpha toroid
                 A:353-359,373-377,434-452,464-467,486-493