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Results Summary:
The query matrix is available at here. The target database is scop40.
This query finds 158 pdb hits containing 167 motifs (shown as below) spanning over 21 SCOP folds and 32 SCOP superfamilies
The ranking list of motif hits is shown as below. The information of each motif is formatted as:
1. 1wj4 KIAA0794 protein 0.1065190
d1wj4a_ Hypothetical protein KIAA0794
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:43-51,53-61,65-77,82-88,110-119
2. 1wmh Protein kinase C, iota type 0.0951022
d1wmha_ Protein kinase C, iota type
CAD & PB1 domains
beta-Grasp (ubiquitin-like)
A:16-24,25-33,37-50,57-64,91-98
3. 2npt Dual specificity mitogen-activated protein ki 0.0950661
d2npta1 Mitogen activated protein kinase kinase 5, Map2k5
CAD & PB1 domains
beta-Grasp (ubiquitin-like)
A:17-24,26-33,40-53,58-65,101-108
4. 1gg3 ERYTHROID MEMBRANE PROTEIN 4.1R 0.0826241
d1gg3a3 Erythroid membrane protein 4.1R
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:1-8,10-17,24-36,44-50,71-77
5. 1ip9 BEM1 PROTEIN 0.0821625
d1ip9a_ Bud emergence mediator Bemp1
CAD & PB1 domains
beta-Grasp (ubiquitin-like)
A:12-20,21-29,33-46,49-56,78-85
6. 1h8c FAS-ASSOCIATED FACTOR 1 0.0817261
d1h8ca_ Fas-associated factor 1, Faf1
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:4-13,15-24,27-39,45-51,72-80
7. 2c60 HUMAN MITOGEN-ACTIVATED PROTEIN KINASE KINASE 0.0811359
d2c60a1 Mitogen-activated protein kinase kinase kinase 3, MEKK 3
CAD & PB1 domains
beta-Grasp (ubiquitin-like)
A:44-52,53-61,65-78,81-88,115-122
8. 1v6e cytoskeleton-associated protein 1 0.0785238
d1v6ea_ Ubiquitin-like domain of tubulin folding cofactor B
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:7-14,20-26,30-43,48-56,78-87
9. 1t0y tubulin folding cofactor B 0.0778028
d1t0ya_ Ubiquitin-like domain of tubulin folding cofactor B
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:3-12,17-24,27-40,45-53,74-84
10. 1wmh Partitioning defective-6 homolog alpha 0.0773515
d1wmhb_ Partitioning defective-6 homolog alpha, PAR-6 alpha
CAD & PB1 domains
beta-Grasp (ubiquitin-like)
B:14-23,24-33,38-51,57-64,87-94
11. 1h4r MERLIN 0.0769704
d1h4ra3 Merlin
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:20-29,30-39,42-55,61-69,91-99
12. 1lfd RALGDS 0.0751597
d1lfda_ Ral guanosine-nucleotide exchange factor, RalGDS
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:15-24,31-38,41-54,63-69,93-99
13. 1zkh Splicing factor 3 subunit 1 0.0745212
d1zkha1 Splicing factor 3 subunit 1, C-terminal domain
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:1-10,20-29,33-46,51-57,74-83
14. 1c1y PROTO-ONKOGENE SERINE/THREONINE PROTEIN KINAS 0.0738934
d1c1yb_ c-Raf1 RBD
Ubiquitin-like
beta-Grasp (ubiquitin-like)
B:56-63,65-72,77-90,96-103,124-130
15. 1ttn dendritic cell-derived ubiquitin-like protein 0.0730087
d1ttna1 Dendritic cell-derived ubiquitin-like protein
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:23-31,33-41,45-58,64-69,89-94
16. 1q27 Putative Nudix hydrolase DR0079 0.0726903
d1q27a_ Hypothetical protein DR0079
Nudix
Nudix
A:34-44,67-71,77-91,98-106,114-123
17. 1xdy Bacterial Sulfite Oxidase 0.0725847
d1xdya_ Bacterial sulfite oxidase YedY
Oxidoreductase molybdopterin-binding domain
Oxidoreductase molybdopterin-binding domain
A:68-74,79-84,116-125,131-138,208-216
18. 1l7y HYPOTHETICAL PROTEIN ZK652.3 0.0723275
d1l7ya_ Hypothetical protein zk652.3
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:13-20,26-34,38-51,56-62,82-89
19. 1mg8 Parkin 0.0717566
d1mg8a_ Ubiquitin-like domain of parkin
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:2-10,13-20,24-37,42-48,66-74
20. 1wgr Growth factor receptor-bound protein 7 0.0715717
d1wgra_ Growth factor receptor-bound protein 7, GRB-7
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:9-17,19-27,31-41,51-59,84-91
21. 2cr5 Reproduction 8 0.0710076
d2cr5a1 UBX domain-containing protein 6 (Reproduction 8)
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:22-31,33-42,45-57,62-68,89-98
22. 1acc ANTHRAX PROTECTIVE ANTIGEN 0.0701557
d1acca_ Anthrax protective antigen
Anthrax protective antigen
Anthrax protective antigen
A:488-495,498-506,522-532,549-555,587-594
23. 1c9f CASPASE-ACTIVATED DNASE 0.0698178
d1c9fa_ Caspase-activated DNase (CAD), DFF40, N-terminal domain
CAD & PB1 domains
beta-Grasp (ubiquitin-like)
A:8-15,20-27,28-41,46-53,68-77
24. 1vjk molybdopterin converting factor, subunit 1 0.0697010
d1vjka_ Molybdopterin synthase subunit MoaD
MoaD/ThiS
beta-Grasp (ubiquitin-like)
A:1-9,19-26,30-43,59-65,78-85
25. 1wgy Rap guanine nucleotide exchange factor 5 0.0694203
d1wgya_ Rap guanine nucleotide exchange factor 5, RapGEF5
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:10-17,19-26,31-44,49-57,79-86
26. 2faz Ubiquitin-like containing PHD and RING finger 0.0692953
d2faza1 Ubiquitin-like PHD and RING finger domain-containing protein 1
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:1-8,12-18,24-37,42-48,65-74
27. 2igd PROTEIN G 0.0680180
d2igda_ Immunoglobulin-binding protein G, different constituent domains
Immunoglobulin-binding domains
beta-Grasp (ubiquitin-like)
A:5-15,16-26,27-43,47-53,54-61
28. 1v8c MoaD related protein 0.0679348
d1v8ca1 MoaD-related protein, N-terminal domain
MoaD/ThiS
beta-Grasp (ubiquitin-like)
A:1-6,16-20,24-37,52-58,76-83
29. 1mg4 DOUBLECORTIN-LIKE KINASE (N-TERMINAL DOMAIN) 0.0676361
d1mg4a_ Doublecortin-like kinase Dclk
Doublecortin (DC)
beta-Grasp (ubiquitin-like)
A:56-64,71-77,83-96,106-111,125-133
30. 1v5o 1700011N24Rik protein 0.0673310
d1v5oa_ 1700011n24rik protein
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:7-18,19-29,33-46,51-57,75-84
31. 2bkf ZINC-FINGER PROTEIN NBR1 (NEXT TO BREAST CANC 0.0667780
d2bkfa1 Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
CAD & PB1 domains
beta-Grasp (ubiquitin-like)
A:3-12,13-22,27-40,43-51,76-85
32. 1vkb hypothetical protein 0.0663350
d1vkba_ Hypothetical protein LOC223267
BtrG-like
BtrG-like
A:1-7,59-71,72-83,88-96,108-118
33. 1wm3 Ubiquitin-like protein SMT3B 0.0663262
d1wm3a_ SUMO-2
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:17-25,27-35,39-52,58-63,80-88
34. 2a9d Sulfite Oxidase 0.0662427
d2a9da2 Sulfite oxidase, middle catalytic domain
Oxidoreductase molybdopterin-binding domain
Oxidoreductase molybdopterin-binding domain
A:152-156,162-166,218-227,236-243,302-310
35. 1z2m interferon, alpha-inducible protein (clone IF 0.0656383
d1z2ma2 Interferon-induced 15 kDa protein
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:81-89,91-99,103-116,121-127,144-153
36. 1wju NEDD8 ultimate buster-1 0.0655437
d1wjua_ NEDD8 ultimate buster-1, NUB1
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:15-22,31-37,41-54,59-65,82-91
37. 1z2m interferon, alpha-inducible protein (clone IF 0.0655437
d1z2ma1 Interferon-induced 15 kDa protein
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:3-9,13-19,24-37,42-49,67-76
38. 1twf DNA-directed RNA polymerase II 140 kDa polype 0.0655308
d1twfb_ RBP2
beta and beta-prime subunits of DNA dependent RNA-polymerase
beta and beta-prime subunits of DNA dependent RNA-polymerase
B:577-583,584-591,592-607,613-620,621-628
39. 1et9 SUPERANTIGEN SPE-H 0.0649308
d1et9a2 Streptococcal superantigen Spe-H
Superantigen toxins, C-terminal domain
beta-Grasp (ubiquitin-like)
A:97-109,110-122,126-143,154-162,196-204
40. 1x1m Ubiquitin-like protein SB132 0.0647878
d1x1ma1 Ubiquitin-like protein 7
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:13-20,27-32,46-59,67-73,90-99
41. 1wxv BAG-family molecular chaperone regulator-1 0.0638529
d1wxva1 Bag-family molecular chaperone regulator-1
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:7-15,16-24,33-46,52-57,76-83
42. 1jal YchF protein 0.0627274
d1jala2 YchF GTP-binding protein, C-terminal domain
TGS-like
beta-Grasp (ubiquitin-like)
A:279-287,288-296,300-310,316-323,353-361
43. 2fug NADH-quinone oxidoreductase chain 3 0.0626370
d2fug33 Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain
2Fe-2S ferredoxin-like
beta-Grasp (ubiquitin-like)
3:1-7,8-14,18-27,48-54,89-95
44. 2ghf Zinc fingers and homeoboxes protein 1 0.0626017
d2ghfa1 Zinc fingers and homeoboxes protein 1, ZHX1
C2H2 and C2HC zinc fingers
C2H2 and C2HC zinc fingers
A:50-55,56-60,62-75,79-88,89-98
45. 1wxq GTP-binding protein 0.0623403
d1wxqa2 GTP-binding protein PH0525
TGS-like
beta-Grasp (ubiquitin-like)
A:320-325,341-345,350-360,366-372,386-394
46. 1wgd Homocysteine-responsive endoplasmic reticulum 0.0618774
d1wgda_ Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:7-13,21-27,31-44,51-57,77-85
47. 1wx8 RIKEN cDNA 4931431F19 0.0615953
d1wx8a1 4931431F19Rik
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:16-25,26-35,38-51,56-62,79-88
48. 1wxa Afadin 0.0614628
d1wxaa1 Afadin
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:9-16,25-31,35-48,57-65,98-107
49. 1lm8 ELONGIN B 0.0614515
d1lm8b_ Elongin B
Ubiquitin-like
beta-Grasp (ubiquitin-like)
B:1-10,11-20,23-36,41-47,72-80
50. 2z0d Microtubule-associated proteins 1A/1B light c 0.0613234
d2z0db1 Microtubule-associated proteins 1A/1B light chain 3B
Ubiquitin-like
beta-Grasp (ubiquitin-like)
B:29-38,50-56,59-72,79-84,107-115
51. 1f2r INHIBITOR OF CASPASE-ACTIVATED DNASE 0.0609088
d1f2ri_ Inhibitor of caspase-activated DNase (ICAD), DFF45, N-terminal domain
CAD & PB1 domains
beta-Grasp (ubiquitin-like)
I:18-25,31-37,38-51,59-65,81-89
52. 1se9 ubiquitin family 0.0606244
d1se9a_ Hypothetical protein At3g01050
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:7-15,17-26,30-43,56-61,84-92
53. 1enf ENTEROTOXIN H 0.0601974
d1enfa2 Staphylococcal enterotoxin H, SEH
Superantigen toxins, C-terminal domain
beta-Grasp (ubiquitin-like)
A:107-117,118-129,134-151,160-169,203-213
54. 1xlq Putidaredoxin 0.0600060
d1xlqa1 2Fe-2S ferredoxin
2Fe-2S ferredoxin-like
beta-Grasp (ubiquitin-like)
A:1-8,10-17,22-31,48-53,95-102
55. 1wx9 HLA-B associated transcript-3 isoform b 0.0598982
d1wx9a1 Large proline-rich protein BAT3
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:8-15,17-24,29-42,47-53,70-78
56. 1v30 Hypothetical UPF0131 protein PH0828 0.0597657
d1v30a_ Hypothetical protein PH0828
BtrG-like
BtrG-like
A:8-13,55-64,65-75,80-89,90-99
57. 2bwf UBIQUITIN-LIKE PROTEIN DSK2 0.0597514
d2bwfa1 DSK2
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:2-10,11-19,23-36,41-47,64-73
58. 2fb1 conserved hypothetical protein 0.0595628
d2fb1a2 Hypothetical protein BT0354, N-terminal domain
Nudix
Nudix
A:12-24,46-50,55-69,74-82,92-101
59. 2c5l PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C PLC 0.0593542
d2c5lc1 Phospholipase C-epsilon-1
Ubiquitin-like
beta-Grasp (ubiquitin-like)
C:2135-2143,2149-2157,2160-2173,2186-2195,2227-2236
60. 2cs4 Protein C12orf2 0.0593225
d2cs4a1 Ras association domain-containing protein 8
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:8-15,16-23,29-42,46-54,80-87
61. 1gnu GABARAP 0.0592839
d1gnua_ GABA(A) receptor associated protein GABARAP
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:27-36,47-53,56-69,76-81,103-111
62. 1tke Threonyl-tRNA synthetase 0.0592347
d1tkea1 Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain
TGS-like
beta-Grasp (ubiquitin-like)
A:1-7,9-15,19-28,36-41,53-61
63. 2inc TouB protein 0.0591331
d2incc1 Toluene, o-xylene monooxygenase oxygenase subunit TouB
TmoB-like
beta-Grasp (ubiquitin-like)
C:3-11,16-22,26-39,49-57,76-85
64. 1oey NEUTROPHIL CYTOSOL FACTOR 2 0.0585172
d1oeya_ Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)
CAD & PB1 domains
beta-Grasp (ubiquitin-like)
A:352-358,360-366,371-384,391-395,420-427
65. 1wgh ubiquitin-like 3 0.0579509
d1wgha_ Ubiquitin-like protein 3, Ubl3
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:16-24,26-34,38-51,66-70,89-96
66. 2guf Vitamin B12 transporter btuB 0.0579072
d2gufa1 Outer membrane cobalamin transporter BtuB
Porins
Transmembrane beta-barrels
A:75-81,82-85,91-100,105-114,122-131
67. 1yqb Ubiquilin 3 0.0573954
d1yqba1 Ubiquilin-3
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:20-29,30-39,42-55,60-66,83-92
68. 1l5p ferredoxin 0.0565899
d1l5pa_ 2Fe-2S ferredoxin
2Fe-2S ferredoxin-like
beta-Grasp (ubiquitin-like)
A:1-8,9-16,21-30,47-54,87-93
69. 2fug NADH-quinone oxidoreductase chain 1 0.0564653
d2fug13 NADH-quinone oxidoreductase chain 1, Nqo1
Nqo1 middle domain-like
beta-Grasp (ubiquitin-like)
1:250-256,261-266,271-281,286-293,325-333
70. 1m94 Protein YNR032c-a 0.0564111
d1m94a_ Ubiquitin-like modifier protein hub1
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:1-9,11-19,23-36,41-47,64-73
71. 1wjn Tubulin-folding protein TBCE 0.0562019
d1wjna_ Tubulin-folding protein TbcE
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:8-17,24-31,34-47,52-58,83-92
72. 2al6 Focal adhesion kinase 1 0.0561041
d2al6a3 Focal adhesion kinase 1
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:35-41,52-58,63-76,82-90,119-127
73. 1k8r Protein kinase byr2 0.0559097
d1k8rb_ Protein kinase byr2
Ubiquitin-like
beta-Grasp (ubiquitin-like)
B:71-77,81-87,90-103,109-117,142-148
74. 3seb STAPHYLOCOCCAL ENTEROTOXIN B 0.0558659
d3seba2 Staphylococcal enterotoxin B, SEB
Superantigen toxins, C-terminal domain
beta-Grasp (ubiquitin-like)
A:129-139,140-151,156-173,181-192,227-237
75. 1vhz ADP compounds hydrolase nudE 0.0557476
d1vhza_ ADP compounds hydrolase NudE
Nudix
Nudix
A:48-57,78-82,87-101,105-115,122-131
76. 1q40 MRNA TRANSPORT REGULATOR Mtr2 0.0550570
d1q40a_ mRNA transport regulator MTR2
NTF2-like
Cystatin-like
A:50-55,56-59,66-79,139-154,162-173
77. 1b25 PROTEIN (FORMALDEHYDE FERREDOXIN OXIDOREDUCTA 0.0550025
d1b25a2 Formaldehyde ferredoxin oxidoreductase
Aldehyde ferredoxin oxidoreductase, N-terminal domain
Aldehyde ferredoxin oxidoreductase, N-terminal domain
A:6-14,15-23,33-47,57-62,107-114
78. 1oey NEUTROPHIL CYTOSOL FACTOR 4 0.0549451
d1oeyj_ Neutrophil cytosol factor 4 (p40phox component of NADPH oxidase)
CAD & PB1 domains
beta-Grasp (ubiquitin-like)
J:238-247,248-257,266-279,282-290,323-329
79. 1vk6 NADH pyrophosphatase 0.0544870
d1vk6a2 NADH pyrophosphatase
Nudix
Nudix
A:127-138,156-161,166-180,185-195,198-207
80. 1xd3 UBC protein 0.0534674
d1xd3b_ Ubiquitin
Ubiquitin-like
beta-Grasp (ubiquitin-like)
B:1-8,10-16,22-35,40-46,63-72
81. 1doi 2FE-2S FERREDOXIN 0.0529942
d1doia_ 2Fe-2S ferredoxin
2Fe-2S ferredoxin-like
beta-Grasp (ubiquitin-like)
A:1-8,36-42,47-56,71-77,109-116
82. 1v5t 8430435I17Rik Protein 0.0528178
d1v5ta_ 8430435i17rik protein
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:9-15,16-22,29-42,48-52,74-81
83. 1uel UV excision repair protein RAD23 homolog B 0.0524411
d1uela_ Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:1-8,10-17,22-35,43-49,69-75
84. 1i7h FERREDOXIN 0.0518081
d1i7ha_ Adrenodoxin-like ferredoxin
2Fe-2S ferredoxin-like
beta-Grasp (ubiquitin-like)
A:2-8,14-21,26-35,51-58,94-100
85. 1e7u PHOSPHATIDYLINOSITOL 3-KINASE CATALYTIC SUBUN 0.0517947
d1e7ua3 Phoshoinositide 3-kinase (PI3K)
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:218-227,228-237,240-253,270-275,303-309
86. 1b25 PROTEIN (FORMALDEHYDE FERREDOXIN OXIDOREDUCTA 0.0517438
d1b25a2 Formaldehyde ferredoxin oxidoreductase
Aldehyde ferredoxin oxidoreductase, N-terminal domain
Aldehyde ferredoxin oxidoreductase, N-terminal domain
A:118-125,126-133,140-153,156-161,195-203
87. 1we6 splicing factor, putative 0.0517143
d1we6a_ Splicing factor 3 subunit 1, C-terminal domain
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:27-34,42-48,53-66,71-76,97-103
88. 1fm0 MOLYBDOPTERIN CONVERTIN FACTOR, SUBUNIT 1 0.0515677
d1fm0d_ Molybdopterin synthase subunit MoaD
MoaD/ThiS
beta-Grasp (ubiquitin-like)
D:1-7,17-22,27-40,51-56,69-76
89. 2a6t SPAC19A8.12 0.0515464
d2a6ta2 mRNA decapping enzyme Dcp2p catalytic domain
Nudix
Nudix
A:97-105,126-130,135-149,160-167,168-178
90. 1wh3 59 kDa 2'-5'-oligoadenylate synthetase like p 0.0512374
d1wh3a_ 2'-5'-oligoadenylate synthetase-like protein, OASL
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:7-15,17-25,29-42,47-51,70-79
91. 1hzt ISOPENTENYL DIPHOSPHATE DELTA-ISOMERASE 0.0511065
d1hzta_ Isopentenyl diphosphate isomerase
Nudix
Nudix
A:31-41,65-69,75-88,91-109,111-126
92. 1v97 Xanthine dehydrogenase 0.0511012
d1v97a2 Xanthine oxidase, N-terminal domain
2Fe-2S ferredoxin-like
beta-Grasp (ubiquitin-like)
A:5-11,12-18,25-35,51-60,81-87
93. 1wia hypothetical ubiquitin-like protein (RIKEN cD 0.0508285
d1wiaa_ Ubiquitin-like protein bab25500 (2010008E23Rik)
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:162-170,172-180,184-194,199-205,224-232
94. 1m4v SET3, superantigen-like protein 0.0506868
d1m4va2 Superantigen-like protein SET3
Superantigen toxins, C-terminal domain
beta-Grasp (ubiquitin-like)
A:106-118,119-131,136-153,162-169,195-203
95. 1iry hMTH1 0.0506663
d1irya_ 7,8-dihydro-8-oxoguanine triphosphatase Hmth1
Nudix
Nudix
A:3-12,34-39,44-58,64-75,79-88
96. 1v1o EXOTOXIN 1 0.0506406
d1v1oa2 Exotoxin 1 (SET1, Superantigen-like protein 7)
Superantigen toxins, C-terminal domain
beta-Grasp (ubiquitin-like)
A:112-125,126-140,143-160,168-176,202-212
97. 1v86 DNA segment, Chr 7, Wayne State University 12 0.0503449
d1v86a_ hypothetical D7wsu128e protein
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:17-25,26-34,38-51,59-61,78-84
98. 2bye PHOSPHOLIPASE C, EPSILON 1 0.0494878
d2byea1 Phospholipase C-epsilon-1
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:8-16,23-30,33-43,54-61,101-108
99. 1ryj unknown 0.0494756
d1ryja_ Hypothetical protein MTH1743
MoaD/ThiS
beta-Grasp (ubiquitin-like)
A:6-14,17-25,28-37,43-48,61-68
100. 1yel At1g16640 0.0493535
d1yela1 At1g16640
DNA-binding pseudobarrel domain
DNA-binding pseudobarrel domain
A:38-45,47-58,66-75,80-88,90-98
101. 2pia PHTHALATE DIOXYGENASE REDUCTASE 0.0492053
d2piaa3 Phthalate dioxygenase reductase, C-terminal domain
2Fe-2S ferredoxin-like
beta-Grasp (ubiquitin-like)
A:236-244,245-253,256-265,280-286,315-320
102. 1n6z Hypothetical 12.3 kDa protein in ZDS2-URA5 in 0.0488926
d1n6za_ Hypothetical protein Yml108w
Hypothetical protein Yml108w
Hypothetical protein Yml108w
A:6-14,34-44,49-69,72-78,80-86
103. 1czp FERREDOXIN I 0.0484051
d1czpa_ 2Fe-2S ferredoxin
2Fe-2S ferredoxin-like
beta-Grasp (ubiquitin-like)
A:1-11,12-22,25-34,49-55,86-92
104. 2b0v NUDIX hydrolase 0.0481325
d2b0va1 Hypothetical protein NE0184
Nudix
Nudix
A:5-13,36-40,45-59,65-77,78-90
105. 1wf9 NPL4 family protein 0.0477076
d1wf9a1 NPL4-like protein 1
Ubiquitin-like
beta-Grasp (ubiquitin-like)
A:8-15,16-23,29-42,47-52,85-94
106. 1ur4 GALACTANASE 0.0476508
d1ur4a_ Beta-1,4-galactanase
(Trans)glycosidases
TIM beta/alpha-barrel
A:43-46,48-51,52-61,374-377,379-382
107. 1nyr threonyl-tRNA synthetase 1 0.0466461
d1nyra2 Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain
TGS-like
beta-Grasp (ubiquitin-like)
A:4-9,11-16,21-31,39-43,56-62
108. 1vky S-adenosylmethionine:tRNA ribosyltransferase- 0.0465723
d1vkya_ Queuosine biosynthesis protein queA
QueA-like
QueA-like
A:26-34,35-43,42-51,285-291,330-335
109. 2fkb Putative Nudix hydrolase yfcD 0.0463736
d2fkba1 Hypothetical protein YfcD
Nudix
Nudix
A:36-47,70-75,80-94,100-111,112-124
110. 2fug NADH-quinone oxidoreductase chain 1 0.0461106
d2fug13 NADH-quinone oxidoreductase chain 1, Nqo1
Nqo1 middle domain-like
beta-Grasp (ubiquitin-like)
1:250-256,261-266,271-281,292-294,325-333
111. 2fvv Diphosphoinositol polyphosphate phosphohydrol 0.0460702
d2fvva1 Diphosphoinositol polyphosphate phosphohydrolase
Nudix
Nudix
A:16-27,49-53,58-72,76-88,89-99
112. 1f3y DIADENOSINE 5',5'''-P1,P4-TETRAPHOSPHATE HYDR 0.0459664
d1f3ya_ Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
Nudix
Nudix
A:13-24,43-47,52-66,69-76,102-113
113. 1feh PROTEIN (PERIPLASMIC HYDROGENASE 1) 0.0458905
d1feha2 Fe-only hydrogenase, N-terminal domain
2Fe-2S ferredoxin-like
beta-Grasp (ubiquitin-like)
A:1-7,8-14,18-27,49-54,68-74
114. 1viu ADP-ribose pyrophosphatase 0.0457917
d1viua_ ADP-ribose pyrophosphatase homologue YffH
Nudix
Nudix
A:45-56,84-88,92-106,112-120,124-136
115. 1urj MAJOR DNA-BINDING PROTEIN 0.0457687
d1urja_ Infected cell protein 8, ICP8
Viral ssDNA binding protein
Viral ssDNA binding protein
A:912-923,959-967,968-975,975-988,1021-1031
116. 1fob BETA-1,4-GALACTANASE 0.0456267
d1foba_ Beta-1,4-galactanase
(Trans)glycosidases
TIM beta/alpha-barrel
A:22-25,27-30,31-40,316-320,321-325
117. 1feu 50S RIBOSOMAL PROTEIN L25 0.0455332
d1feua_ Ribosomal protein TL5 (general stress protein CTC)
Ribosomal protein L25-like
Ribosomal protein L25-like
A:23-31,32-40,40-52,68-77,82-91
118. 1f3y DIADENOSINE 5',5'''-P1,P4-TETRAPHOSPHATE HYDR 0.0449297
d1f3ya_ Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
Nudix
Nudix
A:13-24,43-47,52-66,79-83,102-113
119. 1wgk RIKEN cDNA 2900073H19 protein 0.0448974
d1wgka_ C9orf74 homolog
MoaD/ThiS
beta-Grasp (ubiquitin-like)
A:8-19,30-40,44-58,73-79,96-104
120. 1tif TRANSLATION INITIATION FACTOR 3 0.0448793
d1tifa_ Translation initiation factor IF3, N-terminal domain
Translation initiation factor IF3, N-terminal domain
beta-Grasp (ubiquitin-like)
A:15-21,23-30,30-42,43-50,55-61
121. 1n62 Carbon monoxide dehydrogenase small chain 0.0448672
d1n62a2 Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain
2Fe-2S ferredoxin-like
beta-Grasp (ubiquitin-like)
A:3-11,12-20,24-34,50-55,71-76
122. 1rrq MutY 0.0448229
d1rrqa2 Adenine glycosylase MutY, C-terminal domain
Nudix
Nudix
A:234-247,269-273,277-287,298-308,309-323
123. 2bs2 QUINOL-FUMARATE REDUCTASE IRON-SULFUR SUBUNIT 0.0443459
d2bs2b2 Fumarate reductase iron-sulfur protein, N-terminal domain
2Fe-2S ferredoxin-like
beta-Grasp (ubiquitin-like)
B:3-13,19-30,35-49,65-70,87-93
124. 1zps Phosphoribosyl-AMP cyclohydrolase 0.0443262
d1zpsa1 Phosphoribosyl-AMP cyclohydrolase HisI
HisI-like
HisI-like
A:23-32,33-43,43-54,75-85,89-99
125. 1g0s HYPOTHETICAL 23.7 KDA PROTEIN IN ICC-TOLC INT 0.0442733
d1g0sa_ ADP-ribose pyrophosphatase
Nudix
Nudix
A:57-68,94-99,104-118,121-132,136-148
126. 2azw MutT/nudix family protein 0.0442028
d2azwa1 Hypothetical protein EF1141
Nudix
Nudix
A:15-25,46-50,55-69,73-89,90-105
127. 2fml MutT/nudix family protein 0.0440937
d2fmla2 Hypothetical protein EF2700, N-terminal domain
Nudix
Nudix
A:38-52,75-79,84-98,106-113,122-132
128. 1xhs Hypothetical UPF0131 protein ytfP 0.0439174
d1xhsa_ Hypothetical protein YtfP
BtrG-like
BtrG-like
A:1-6,48-59,59-72,76-84,85-93
129. 1wid DNA-binding protein RAV1 0.0435996
d1wida_ DNA-binding protein RAV1
DNA-binding pseudobarrel domain
DNA-binding pseudobarrel domain
A:225-233,235-245,255-265,270-277,283-290
130. 1nek Succinate dehydrogenase iron-sulfur protein 0.0434499
d1nekb2 Succinate dehydogenase iron-sulfur protein, N-terminal domain
2Fe-2S ferredoxin-like
beta-Grasp (ubiquitin-like)
B:1-10,18-27,34-47,63-68,88-93
131. 1krh Benzoate 1,2-Dioxygenase Reductase 0.0433576
d1krha3 Benzoate dioxygenase reductase, N-terminal domain
2Fe-2S ferredoxin-like
beta-Grasp (ubiquitin-like)
A:2-11,13-22,25-34,49-55,89-95
132. 1pun Mutator mutT protein 0.0431425
d1puna_ Nucleoside triphosphate pyrophosphorylase (MutT)
Nudix
Nudix
A:1-14,35-38,45-59,65-76,77-89
133. 1rm6 4-hydroxybenzoyl-CoA reductase gamma subunit 0.0431351
d1rm6c2 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain
2Fe-2S ferredoxin-like
beta-Grasp (ubiquitin-like)
C:1-10,11-20,23-33,49-54,69-75
134. 1qqr STREPTOKINASE DOMAIN B 0.0424863
d1qqra_ Streptokinase
Staphylokinase/streptokinase
beta-Grasp (ubiquitin-like)
A:157-169,182-189,195-212,213-227,266-279
135. 1wpg Sarcoplasmic/endoplasmic reticulum calcium AT 0.0422226
d1wpga3 Calcium ATPase
Metal cation-transporting ATPase, ATP-binding domain N
Metal cation-transporting ATPase, ATP-binding domain N
A:526-531,532-537,538-555,560-568,591-599
136. 1nqz CoA pyrophosphatase (MutT/nudix family protei 0.0419445
d1nqza_ Coenzyme A pyrophosphatase
Nudix
Nudix
A:33-45,69-73,78-92,98-110,112-123
137. 2b06 MutT/nudix family protein 0.0419287
d2b06a1 Hypothetical protein SP1235 (spr1115)
Nudix
Nudix
A:4-19,41-45,50-64,68-80,81-94
138. 1l4d STREPTOKINASE 0.0417519
d1l4db_ Streptokinase
Staphylokinase/streptokinase
beta-Grasp (ubiquitin-like)
B:15-27,37-42,75-91,97-104,132-146
139. 2sak STAPHYLOKINASE 0.0415282
d2saka_ Staphylokinase
Staphylokinase/streptokinase
beta-Grasp (ubiquitin-like)
A:22-34,36-49,56-72,76-82,122-135
140. 1rrq MutY 0.0413189
d1rrqa2 Adenine glycosylase MutY, C-terminal domain
Nudix
Nudix
A:234-247,269-273,277-287,292-298,309-323
141. 1vle Pyrogallol hydroxytransferase small subunit 0.0411879
d1vlen2 Transhydroxylase beta subunit, BthL, N-terminal domain
4Fe-4S ferredoxins
Ferredoxin-like
N:2-10,153-160,160-172,173-175,185-190
142. 1vcd Ndx1 0.0406372
d1vcda1 AP6A hydrolase Ndx1
Nudix
Nudix
A:1-12,29-32,38-52,58-69,71-84
143. 1rya GDP-mannose mannosyl hydrolase 0.0406108
d1ryaa_ GDP-mannose mannosyl hydrolase NudD
Nudix
Nudix
A:17-28,49-53,58-72,80-92,99-112
144. 1ty0 putative exotoxin (superantigen) 0.0404727
d1ty0a2 Streptococcal pyrogenic exotoxin Spe-J
Superantigen toxins, C-terminal domain
beta-Grasp (ubiquitin-like)
A:104-111,112-120,130-147,156-165,200-210
145. 1kqf FORMATE DEHYDROGENASE, NITRATE-INDUCIBLE, IRO 0.0397852
d1kqfb1 Formate dehydrogenase N, iron-sulfur (beta) subunit
4Fe-4S ferredoxins
Ferredoxin-like
B:30-36,183-188,188-207,210-215,223-230
146. 1hz6 PROTEIN L 0.0395679
d1hz6a_ Immunoglobulin light chain-binding domain of protein L
Immunoglobulin-binding domains
beta-Grasp (ubiquitin-like)
A:3-13,15-25,25-45,45-53,56-64
147. 1q40 mRNA export factor MEX67 0.0393856
d1q40b_ NTF2-like domain of mRNA export factor MEX67
NTF2-like
Cystatin-like
B:335-342,385-388,388-400,471-484,488-501
148. 1u20 U8 snoRNA-binding protein X29 0.0390701
d1u20a1 U8 snorna-binding protein x29
Nudix
Nudix
A:32-49,71-75,81-95,107-116,118-129
149. 1h0h FORMATE DEHYDROGENASE (SMALL SUBUNIT) 0.0388259
d1h0hb_ Tungsten containing formate dehydrogenase, small subunit
4Fe-4S ferredoxins
Ferredoxin-like
B:2-8,160-165,165-185,186-190,196-203
150. 1jkg TAP 0.0385639
d1jkgb_ NTF2-like domain of Tip associating protein, TAP
NTF2-like
Cystatin-like
B:414-420,455-458,458-470,507-523,525-539
151. 1sjy MutT/nudix family protein 0.0385356
d1sjya_ Hypothetical protein DR1025
Nudix
Nudix
A:12-23,48-52,57-71,75-88,90-103
152. 1x51 A/G-specific adenine DNA glycosylase 0.0381083
d1x51a1 A/G-specific adenine DNA glycosylase
Nudix
Nudix
A:18-31,54-58,61-78,85-96,97-109
153. 1nww Limonene-1,2-epoxide hydrolase 0.0376067
d1nwwa_ Limonene-1,2-epoxide hydrolase
NTF2-like
Cystatin-like
A:51-56,60-63,63-78,108-124,125-134
154. 1mp2 ADPR pyrophosphatase 0.0370261
d1mp2a_ ADP-ribose pyrophosphatase
Nudix
Nudix
A:34-53,75-79,85-99,103-113,117-129
155. 1vcd Ndx1 0.0369918
d1vcda1 AP6A hydrolase Ndx1
Nudix
Nudix
A:1-12,29-32,38-52,54-58,71-84
156. 2sak STAPHYLOKINASE 0.0364458
d2saka_ Staphylokinase
Staphylokinase/streptokinase
beta-Grasp (ubiquitin-like)
A:22-34,36-49,56-72,86-95,122-135
157. 1ktg Diadenosine Tetraphosphate Hydrolase 0.0363201
d1ktga_ Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
Nudix
Nudix
A:2-15,34-39,44-58,70-79,80-93
158. 1v8y ADP-ribose pyrophosphatase 0.0362555
d1v8ya_ ADP-ribose pyrophosphatase
Nudix
Nudix
A:27-41,65-69,74-88,92-101,105-117
159. 1tuh hypothetical protein EGC068 0.0361193
d1tuha_ Hypothetical protein egc068 from a soil-derived mobile gene cassette
NTF2-like
Cystatin-like
A:51-56,62-67,67-83,113-128,129-139
160. 1sjy MutT/nudix family protein 0.0355227
d1sjya_ Hypothetical protein DR1025
Nudix
Nudix
A:12-23,48-52,57-71,73-75,90-103
161. 1s5a Hypothetical protein yesE 0.0354862
d1s5aa_ Hypothetical protein YesE
NTF2-like
Cystatin-like
A:36-41,49-53,53-68,100-116,117-126
162. 2a15 HYPOTHETICAL PROTEIN Rv0760c 0.0351927
d2a15a1 Hypothetical protein Rv0760c
NTF2-like
Cystatin-like
A:36-40,53-56,56-72,102-117,119-128
163. 1igr PROTEIN (INSULIN-LIKE GROWTH FACTOR RECEPTOR 0.0347923
d1igra3 Type 1 insulin-like growth factor receptor Cys-rich domain
Growth factor receptor domain
Knottins (small inhibitors, toxins, lectins)
A:238-242,244-248,248-255,266-270,271-275
164. 1ktg Diadenosine Tetraphosphate Hydrolase 0.0335604
d1ktga_ Diadenosine tetraphosphate hydrolase (Ap4A hydrolase)
Nudix
Nudix
A:2-15,34-39,44-58,63-66,80-93
165. 1ut9 CELLULOSE 1,4-BETA-CELLOBIOSIDASE 0.0331818
d1ut9a1 Cellulose 1,4-beta-cellobiosidase CbhA
Six-hairpin glycosidases
alpha/alpha toroid
A:353-359,373-377,434-452,466-472,486-493
166. 1q3i Na,K-ATPase 0.0331422
d1q3ia_ Sodium/potassium-transporting ATPase alpha chain
Metal cation-transporting ATPase, ATP-binding domain N
Metal cation-transporting ATPase, ATP-binding domain N
A:512-517,518-523,524-542,543-553,576-587
167. 1ut9 CELLULOSE 1,4-BETA-CELLOBIOSIDASE 0.0314525
d1ut9a1 Cellulose 1,4-beta-cellobiosidase CbhA
Six-hairpin glycosidases
alpha/alpha toroid
A:353-359,373-377,434-452,464-467,486-493