Results Summary:
The query matrix is available at here. The target database is scop40_genmatrix
This query finds 19 pdb hits containing 26 motifs (shown as below) spanning over 1 SCOP fold and 2 SCOP superfamilies
The ranking list of motif hits is shown as below. The description of each motif is formatted as:

• In the first line, the 1st column is ranking index, the 2nd column is pdbid links to PDB (e.g. 1sc6), the 3rd column is the description of this pdb (e.g. putative acylphosphatase) and the 4th column is the ranking score;
• The second line provides the SCOP domain id (1st column, e.g., d1sc6d3) and corresponding domain description (2nd column, e.g. Acylphosphatase) if the motif can be mapped to a SCOP domain;
• The third and the fourth line provide the SCOP superfamily and fold descriptions of the mapped scop domain, respectively (e.g. Acylphosphatase/BLUF domain-like and Ferredoxin-like);
• The last line is SSE array of the motif. It shows the pdb chain followed by the pdb residue numbering range of each secondary structure element(SSE).
  
Mouse-click on a structure motif downloads a PyMOL script to display the structure motif in protein structure (e.g. D:337-346,347-362,364-373,375-384,386-400,402-410).
The N-terminus of motif is colored in green, each SSE is colored in red and the start residiue of each SSE is colored in purple. Click here to downlaod the free version of PyMOL.

    1.  1yfu     3-hydroxyanthranilate-3,4-dioxygenase                                             0.1024066
        d1yfua1  3-hydroxyanthranilate-3,4-dioxygenase
                 RmlC-like cupins
                 Double-stranded beta-helix
                 A:26-30,35-43,49-53,54-63,63-73,74-83,82-91,91-100,104-112,118-127

    2.  1dgw     CANAVALIN                                                                         0.1022286
        d1dgwa_  Seed storage 7S protein
                 RmlC-like cupins
                 Double-stranded beta-helix
                 A:64-71,85-95,96-105,105-114,114-124,125-134,136-143,143-151,155-165,218-222

    3.  1od5     GLYCININ                                                                          0.1017812
        d1od5a2  Seed storage 7S protein
                 RmlC-like cupins
                 Double-stranded beta-helix
                 A:348-355,366-376,378-386,388-396,396-406,408-418,420-426,427-434,437-447,451-454

    4.  1od5     GLYCININ                                                                          0.0980681
        d1od5a1  Seed storage 7S protein
                 RmlC-like cupins
                 Double-stranded beta-helix
                 A:27-33,44-54,55-63,64-73,73-82,114-120,119-128,129-136,139-149,236-240

    5.  1pmi     PHOSPHOMANNOSE ISOMERASE                                                          0.0966464
        d1pmia_  Phosphomannose isomerase
                 RmlC-like cupins
                 Double-stranded beta-helix
                 A:44-52,97-105,105-113,137-143,144-153,265-273,273-280,284-289,289-297,302-307

    6.  2et1     Oxalate oxidase 1                                                                 0.0959509
        d2et1a1  Germin
                 RmlC-like cupins
                 Double-stranded beta-helix
                 A:53-60,71-81,82-92,93-101,101-112,115-126,125-133,134-142,145-155,158-162

    7.  1y3t     Hypothetical protein yxaG                                                         0.0900414
        d1y3ta1  Hypothetical protein YxaG
                 RmlC-like cupins
                 Double-stranded beta-helix
                 A:30-38,44-56,55-65,67-75,75-83,84-92,91-99,102-109,110-120,158-162

    8.  1xe7     Hypothetical 22.5 kDa protein in TUB1-CPR3 in                                     0.0898230
        d1xe7a_  Hypothetical protein YML079W
                 RmlC-like cupins
                 Double-stranded beta-helix
                 A:45-56,77-87,91-99,99-108,110-118,120-128,137-144,145-152,160-169,175-179

    9.  1zx5     mannosephosphate isomerase, putative                                              0.0882613
        d1zx5a1  Putative mannosephosphate isomerase AF0035
                 RmlC-like cupins
                 Double-stranded beta-helix
                 A:34-40,83-93,93-100,116-124,124-132,156-164,163-171,174-179,178-188,192-195

   10.  1qwr     Mannose-6-phosphate isomerase                                                     0.0877578
        d1qwra_  Mannose-6-phosphate isomerase ManA
                 RmlC-like cupins
                 Double-stranded beta-helix
                 A:34-41,81-91,94-98,114-124,127-133,154-159,161-169,171-178,177-187,191-196

   11.  1dgw     CANAVALIN                                                                         0.0860807
        d1dgwa_  Seed storage 7S protein
                 RmlC-like cupins
                 Double-stranded beta-helix
                 A:64-71,85-95,96-105,105-114,114-124,125-134,136-143,143-151,155-165,173-177

   12.  1j58     YVRK PROTEIN                                                                      0.0860511
        d1j58a_  Oxalate decarboxylase OxdC (YvrK)
                 RmlC-like cupins
                 Double-stranded beta-helix
                 A:240-247,256-266,268-276,278-286,286-296,298-308,307-315,316-324,327-338,341-344

   13.  1j58     YVRK PROTEIN                                                                      0.0858369
        d1j58a_  Oxalate decarboxylase OxdC (YvrK)
                 RmlC-like cupins
                 Double-stranded beta-helix
                 A:62-69,78-88,87-98,98-107,108-117,119-128,129-137,138-146,146-157,200-204

   14.  2f4p     hypothetical protein TM1010                                                       0.0833125
        d2f4pa1  Hypothetical protein TM1010
                 RmlC-like cupins
                 Double-stranded beta-helix
                 A:20-28,35-45,50-54,55-64,64-72,76-82,81-90,90-100,100-111,117-122

   15.  1od5     GLYCININ                                                                          0.0814797
        d1od5a1  Seed storage 7S protein
                 RmlC-like cupins
                 Double-stranded beta-helix
                 A:27-33,44-54,55-63,64-73,73-82,114-120,119-128,129-136,139-149,162-166

   16.  1x82     Glucose-6-phosphate isomerase                                                     0.0797257
        d1x82a_  Glucose-6-phosphate isomerase, GPI
                 RmlC-like cupins
                 Double-stranded beta-helix
                 A:50-58,65-75,83-92,94-103,105-113,115-123,124-133,134-141,144-154,156-160

   17.  1yud     hypothetical protein SO0799                                                       0.0786906
        d1yuda1  Hypothetical protein SO0799
                 RmlC-like cupins
                 Double-stranded beta-helix
                 A:19-25,38-48,51-58,58-67,70-78,80-88,97-104,105-112,115-125,131-135

   18.  1dcs     DEACETOXYCEPHALOSPORIN C SYNTHASE                                                 0.0762660
        d1dcsa_  Deacetoxycephalosporin C synthase
                 Clavaminate synthase-like
                 Double-stranded beta-helix
                 A:98-104,155-166,179-186,187-197,203-209,210-215,221-227,242-246,256-267,304-307

   19.  1lrh     auxin-binding protein 1                                                           0.0753977
        d1lrha_  Auxin binding protein
                 RmlC-like cupins
                 Double-stranded beta-helix
                 A:24-32,40-50,51-59,61-69,69-78,87-94,96-102,104-111,115-125,129-133

   20.  1qwr     Mannose-6-phosphate isomerase                                                     0.0704424
        d1qwra_  Mannose-6-phosphate isomerase ManA
                 RmlC-like cupins
                 Double-stranded beta-helix
                 A:34-41,81-91,94-98,114-124,127-133,154-159,160-162,171-178,177-187,191-196

   21.  1y3t     Hypothetical protein yxaG                                                         0.0703185
        d1y3ta1  Hypothetical protein YxaG
                 RmlC-like cupins
                 Double-stranded beta-helix
                 A:202-210,217-227,233-237,239-247,249-255,256-262,263-271,273-280,282-292,329-333

   22.  2b5h     Cysteine dioxygenase type I                                                       0.0702099
        d2b5ha1  Cysteine dioxygenase type I
                 RmlC-like cupins
                 Double-stranded beta-helix
                 A:58-67,69-79,80-87,91-99,99-108,119-128,127-134,138-145,149-159,162-170

   23.  1yud     hypothetical protein SO0799                                                       0.0693674
        d1yuda1  Hypothetical protein SO0799
                 RmlC-like cupins
                 Double-stranded beta-helix
                 A:25-32,38-48,51-58,58-67,70-78,80-88,97-104,105-112,115-125,131-135

   24.  1znp     hypothetical protein Atu3615                                                      0.0648298
        d1znpa1  Hypothetical protein Atu3615
                 RmlC-like cupins
                 Double-stranded beta-helix
                 A:22-32,38-49,52-60,60-69,71-79,84-90,99-106,107-115,116-126,132-136

   25.  1juh     quercetin 2,3-dioxygenase                                                         0.0593366
        d1juha_  Quercetin 2,3-dioxygenase
                 RmlC-like cupins
                 Double-stranded beta-helix
                 A:32-40,47-57,65-70,70-79,79-88,93-100,99-109,110-118,119-129,176-180

   26.  1znp     hypothetical protein Atu3615                                                      0.0542123
        d1znpa1  Hypothetical protein Atu3615
                 RmlC-like cupins
                 Double-stranded beta-helix
                 A:22-32,38-49,52-60,60-69,71-79,84-90,99-106,107-115,125-127,132-136