Homeodomain-like (102 domains)

Class (a): All alpha proteins [46456]

Fold (a.4): DNA/RNA-binding 3-helical bundle [46688]

Superfamily (a.4.1): Homeodomain-like [46689]

Family (a.4.1.1): Homeodomain [46690]

1.d1p7ia_
|
DALI Alignment & SCR definition (40 / 53 SCRs)
|
PDB
|
Features & SCI
|
PSSM

2.d1le8a_
|
DALI Alignment & SCR definition (40 / 53 SCRs)
|
PDB
|
Features & SCI
|
PSSM

3.d1k61a_
|
DALI Alignment & SCR definition (40 / 60 SCRs)
|
PDB
|
Features & SCI
|
PSSM

4.d1lfba_
|
DALI Alignment & SCR definition (40 / 77 SCRs)
|
PDB
|
Features & SCI
|
PSSM

5.d1e3oc1
|
DALI Alignment & SCR definition (39 / 57 SCRs)
|
PDB
|
Features & SCI
|
PSSM

6.d1pufa_
|
DALI Alignment & SCR definition (41 / 77 SCRs)
|
PDB
|
Features & SCI
|
PSSM

7.d1pufb_
|
DALI Alignment & SCR definition (39 / 73 SCRs)
|
PDB
|
Features & SCI
|
PSSM

8.d1bw5a_
|
DALI Alignment & SCR definition (39 / 66 SCRs)
|
PDB
|
Features & SCI
|
PSSM

9.d1vnda_
|
DALI Alignment & SCR definition (37 / 77 SCRs)
|
PDB
|
Features & SCI
|
PSSM

10.d1fjla_
|
DALI Alignment & SCR definition (41 / 65 SCRs)
|
PDB
|
Features & SCI
|
PSSM

11.d1mija_
|
DALI Alignment & SCR definition (11 / 139 SCRs)
|
PDB
|
Features & SCI
|
PSSM

12.d1uhsa_
|
DALI Alignment & SCR definition (41 / 72 SCRs)
|
PDB
|
Features & SCI
|
PSSM

13.d1wh7a_
|
DALI Alignment & SCR definition (37 / 80 SCRs)
|
PDB
|
Features & SCI
|
PSSM

14.d2ecca1
|
DALI Alignment & SCR definition (40 / 76 SCRs)
|
PDB
|
Features & SCI
|
PSSM

15.d1s7ea1
|
DALI Alignment & SCR definition (28 / 50 SCRs)
|
PDB
|
Features & SCI
|
PSSM

16.d1x41a1
|
DALI Alignment & SCR definition (41 / 47 SCRs)
|
PDB
|
Features & SCI
|
PSSM

17.d1x2ma1
|
DALI Alignment & SCR definition (37 / 52 SCRs)
|
PDB
|
Features & SCI
|
PSSM

18.d1x2na1
|
DALI Alignment & SCR definition (41 / 62 SCRs)
|
PDB
|
Features & SCI
|
PSSM

19.d1x58a1
|
DALI Alignment & SCR definition (38 / 49 SCRs)
|
PDB
|
Features & SCI
|
PSSM

20.d2cufa1
|
DALI Alignment & SCR definition (42 / 82 SCRs)
|
PDB
|
Features & SCI
|
PSSM

21.d2ecba1
|
DALI Alignment & SCR definition (40 / 76 SCRs)
|
PDB
|
Features & SCI
|
PSSM

Family (a.4.1.2): Recombinase DNA-binding domain [46728]

1.d1ijwc_
|
DALI Alignment & SCR definition (39 / 47 SCRs)
|
PDB
|
Features & SCI
|
PSSM

2.d1gdta1
|
DALI Alignment & SCR definition (36 / 43 SCRs)
|
PDB
|
Features & SCI
|
PSSM

3.d1tc3c_
|
DALI Alignment & SCR definition (37 / 51 SCRs)
|
PDB
|
Features & SCI
|
PSSM

4.d1u78a2
|
DALI Alignment & SCR definition (39 / 50 SCRs)
|
PDB
|
Features & SCI
|
PSSM

5.d2ezla_
|
DALI Alignment & SCR definition (38 / 99 SCRs)
|
PDB
|
Features & SCI
|
PSSM

6.d2ezia_
|
DALI Alignment & SCR definition (35 / 75 SCRs)
|
PDB
|
Features & SCI
|
PSSM

Family (a.4.1.3): Myb/SANT domain [46739]

1.d1gvda_
|
DALI Alignment & SCR definition (34 / 52 SCRs)
|
PDB
|
Features & SCI
|
PSSM

2.d1gv2a2
|
DALI Alignment & SCR definition (36 / 47 SCRs)
|
PDB
|
Features & SCI
|
PSSM

3.d1fexa_
|
DALI Alignment & SCR definition (35 / 59 SCRs)
|
PDB
|
Features & SCI
|
PSSM

4.d1ofcx1
|
DALI Alignment & SCR definition (33 / 52 SCRs)
|
PDB
|
Features & SCI
|
PSSM

5.d1ug2a_
|
DALI Alignment & SCR definition (41 / 95 SCRs)
|
PDB
|
Features & SCI
|
PSSM

6.d1wgxa_
|
DALI Alignment & SCR definition (37 / 73 SCRs)
|
PDB
|
Features & SCI
|
PSSM

7.d2crga1
|
DALI Alignment & SCR definition (32 / 57 SCRs)
|
PDB
|
Features & SCI
|
PSSM

8.d2iw5b1
|
DALI Alignment & SCR definition (37 / 65 SCRs)
|
PDB
|
Features & SCI
|
PSSM

9.d2cjja1
|
DALI Alignment & SCR definition (40 / 63 SCRs)
|
PDB
|
Features & SCI
|
PSSM

10.d2cqqa1
|
DALI Alignment & SCR definition (38 / 59 SCRs)
|
PDB
|
Features & SCI
|
PSSM

11.d2cqra1
|
DALI Alignment & SCR definition (38 / 60 SCRs)
|
PDB
|
Features & SCI
|
PSSM

12.d1xc5a1
|
DALI Alignment & SCR definition (1 / 68 SCRs)
|
PDB
|
Features & SCI
|
PSSM

13.d2cu7a1
|
DALI Alignment & SCR definition (37 / 65 SCRs)
|
PDB
|
Features & SCI
|
PSSM

14.d2ckxa1
|
DALI Alignment & SCR definition (40 / 83 SCRs)
|
PDB
|
Features & SCI
|
PSSM

Family (a.4.1.4): DNA-binding domain of telomeric protein [46745]

1.d1w0ua_
|
DALI Alignment & SCR definition (39 / 55 SCRs)
|
PDB
|
Features & SCI
|
PSSM

Family (a.4.1.5): Paired domain [46748]

1.d1k78a1
|
DALI Alignment & SCR definition (41 / 63 SCRs)
|
PDB
|
Features & SCI
|
PSSM

2.d1k78a2
|
DALI Alignment & SCR definition (37 / 61 SCRs)
|
PDB
|
Features & SCI
|
PSSM

Family (a.4.1.6): DNA-binding domain of rap1 [46753]

1.d1igna1
|
DALI Alignment & SCR definition (40 / 86 SCRs)
|
PDB
|
Features & SCI
|
PSSM

2.d1igna2
|
DALI Alignment & SCR definition (31 / 103 SCRs)
|
PDB
|
Features & SCI
|
PSSM

Family (a.4.1.7): Centromere-binding [46756]

1.d1hlva1
|
DALI Alignment & SCR definition (36 / 66 SCRs)
|
PDB
|
Features & SCI
|
PSSM

2.d1hlva2
|
DALI Alignment & SCR definition (34 / 65 SCRs)
|
PDB
|
Features & SCI
|
PSSM

3.d1iufa1
|
DALI Alignment & SCR definition (33 / 78 SCRs)
|
PDB
|
Features & SCI
|
PSSM

4.d1iufa2
|
DALI Alignment & SCR definition (30 / 66 SCRs)
|
PDB
|
Features & SCI
|
PSSM

Family (a.4.1.8): AraC type transcriptional activator [46759]

1.d1bl0a1
|
DALI Alignment & SCR definition (13 / 54 SCRs)
|
PDB
|
Features & SCI
|
PSSM

2.d1bl0a2
|
DALI Alignment & SCR definition (33 / 62 SCRs)
|
PDB
|
Features & SCI
|
PSSM

3.d1d5ya2
|
DALI Alignment & SCR definition (34 / 65 SCRs)
|
PDB
|
Features & SCI
|
PSSM

Family (a.4.1.9): Tetracyclin repressor-like, N-terminal domain [46764]

1.d2vkva1
|
DALI Alignment & SCR definition (34 / 62 SCRs)
|
PDB
|
Features & SCI
|
PSSM

2.d1jt6a1
|
DALI Alignment & SCR definition (35 / 71 SCRs)
|
PDB
|
Features & SCI
|
PSSM

3.d1pb6a1
|
DALI Alignment & SCR definition (29 / 72 SCRs)
|
PDB
|
Features & SCI
|
PSSM

4.d1vi0a1
|
DALI Alignment & SCR definition (32 / 72 SCRs)
|
PDB
|
Features & SCI
|
PSSM

5.d1rkta1
|
DALI Alignment & SCR definition (35 / 81 SCRs)
|
PDB
|
Features & SCI
|
PSSM

6.d1t56a1
|
DALI Alignment & SCR definition (35 / 73 SCRs)
|
PDB
|
Features & SCI
|
PSSM

7.d1ui5a1
|
DALI Alignment & SCR definition (35 / 71 SCRs)
|
PDB
|
Features & SCI
|
PSSM

8.d1t33a1
|
DALI Alignment & SCR definition (32 / 88 SCRs)
|
PDB
|
Features & SCI
|
PSSM

9.d1sgma1
|
DALI Alignment & SCR definition (33 / 73 SCRs)
|
PDB
|
Features & SCI
|
PSSM

10.d2fq4a1
|
DALI Alignment & SCR definition (34 / 69 SCRs)
|
PDB
|
Features & SCI
|
PSSM

11.d2g3ba1
|
DALI Alignment & SCR definition (31 / 71 SCRs)
|
PDB
|
Features & SCI
|
PSSM

12.d2id3a1
|
DALI Alignment & SCR definition (28 / 68 SCRs)
|
PDB
|
Features & SCI
|
PSSM

13.d1v7ba1
|
DALI Alignment & SCR definition (32 / 74 SCRs)
|
PDB
|
Features & SCI
|
PSSM

14.d1z0xa1
|
DALI Alignment & SCR definition (32 / 68 SCRs)
|
PDB
|
Features & SCI
|
PSSM

15.d2i10a1
|
DALI Alignment & SCR definition (38 / 69 SCRs)
|
PDB
|
Features & SCI
|
PSSM

16.d2fd5a1
|
DALI Alignment & SCR definition (32 / 76 SCRs)
|
PDB
|
Features & SCI
|
PSSM

17.d2np5a1
|
DALI Alignment & SCR definition (32 / 69 SCRs)
|
PDB
|
Features & SCI
|
PSSM

18.d1zk8a1
|
DALI Alignment & SCR definition (35 / 72 SCRs)
|
PDB
|
Features & SCI
|
PSSM

19.d2gfna1
|
DALI Alignment & SCR definition (21 / 77 SCRs)
|
PDB
|
Features & SCI
|
PSSM

20.d2g7ga1
|
DALI Alignment & SCR definition (37 / 65 SCRs)
|
PDB
|
Features & SCI
|
PSSM

21.d2fx0a1
|
DALI Alignment & SCR definition (29 / 73 SCRs)
|
PDB
|
Features & SCI
|
PSSM

22.d2g7la1
|
DALI Alignment & SCR definition (37 / 68 SCRs)
|
PDB
|
Features & SCI
|
PSSM

23.d2gena1
|
DALI Alignment & SCR definition (37 / 70 SCRs)
|
PDB
|
Features & SCI
|
PSSM

24.d2d6ya1
|
DALI Alignment & SCR definition (34 / 68 SCRs)
|
PDB
|
Features & SCI
|
PSSM

25.d2fbqa1
|
DALI Alignment & SCR definition (33 / 79 SCRs)
|
PDB
|
Features & SCI
|
PSSM

26.d2np3a1
|
DALI Alignment & SCR definition (14 / 37 SCRs)
|
PDB
|
Features & SCI
|
PSSM

27.d2id6a1
|
DALI Alignment & SCR definition (33 / 75 SCRs)
|
PDB
|
Features & SCI
|
PSSM

28.d2g7sa1
|
DALI Alignment & SCR definition (32 / 74 SCRs)
|
PDB
|
Features & SCI
|
PSSM

29.d2iu5a1
|
DALI Alignment & SCR definition (33 / 71 SCRs)
|
PDB
|
Features & SCI
|
PSSM

30.d2hyja1
|
DALI Alignment & SCR definition (32 / 75 SCRs)
|
PDB
|
Features & SCI
|
PSSM

31.d2hkua1
|
DALI Alignment & SCR definition (35 / 70 SCRs)
|
PDB
|
Features & SCI
|
PSSM

32.d2oi8a1
|
DALI Alignment & SCR definition (29 / 79 SCRs)
|
PDB
|
Features & SCI
|
PSSM

33.d2o7ta1
|
DALI Alignment & SCR definition (32 / 78 SCRs)
|
PDB
|
Features & SCI
|
PSSM

34.d3c07a1
|
DALI Alignment & SCR definition (35 / 75 SCRs)
|
PDB
|
Features & SCI
|
PSSM

Family (a.4.1.11): GARP response regulators [81683]

1.d1irza_
|
DALI Alignment & SCR definition (37 / 64 SCRs)
|
PDB
|
Features & SCI
|
PSSM

Family (a.4.1.12): FIS-like [100918]

1.d1etxa_
|
DALI Alignment & SCR definition (32 / 74 SCRs)
|
PDB
|
Features & SCI
|
PSSM

2.d1ntca_
|
DALI Alignment & SCR definition (12 / 91 SCRs)
|
PDB
|
Features & SCI
|
PSSM

3.d1umqa_
|
DALI Alignment & SCR definition (38 / 60 SCRs)
|
PDB
|
Features & SCI
|
PSSM

4.d1g2ha_
|
DALI Alignment & SCR definition (31 / 61 SCRs)
|
PDB
|
Features & SCI
|
PSSM

Family (a.4.1.13): SLIDE domain [100998]

1.d1ofcx2
|
DALI Alignment & SCR definition (40 / 126 SCRs)
|
PDB
|
Features & SCI
|
PSSM

Family (a.4.1.14): Middle operon regulator, Mor [109659]

1.d1rr7a_
|
DALI Alignment & SCR definition (39 / 94 SCRs)
|
PDB
|
Features & SCI
|
PSSM

Family (a.4.1.15): Psq domain [140213]

1.d2coba1
|
DALI Alignment & SCR definition (39 / 63 SCRs)
|
PDB
|
Features & SCI
|
PSSM

Family (a.4.1.16): Alr1493-like [140216]

1.d2ga1a1
|
DALI Alignment & SCR definition (38 / 101 SCRs)
|
PDB
|
Features & SCI
|
PSSM

Family (a.4.1.17): Nanomeric phage protein-like [140219]

1.d2ao9a1
|
DALI Alignment & SCR definition (35 / 117 SCRs)
|
PDB
|
Features & SCI
|
PSSM

Family (a.4.1.18): SWIRM domain [140222]

1.d2fq3a1
|
DALI Alignment & SCR definition (37 / 85 SCRs)
|
PDB
|
Features & SCI
|
PSSM
|
Prediction Results

2.d2cuja1
|
DALI Alignment & SCR definition (39 / 101 SCRs)
|
PDB
|
Features & SCI
|
PSSM

3.d2dw4a1
|
DALI Alignment & SCR definition (33 / 102 SCRs)
|
PDB
|
Features & SCI
|
PSSM

Family (a.4.1.19): Cgl2762-like [158260]

1.d2jn6a1
|
DALI Alignment & SCR definition (37 / 89 SCRs)
|
PDB
|
Features & SCI
|
PSSM

Family (a.4.1.20): RpiR-like [158263]

1.d2o3fa1
|
DALI Alignment & SCR definition (28 / 83 SCRs)
|
PDB
|
Features & SCI
|
PSSM