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Prediction of Structurally Conserved Regions without Homologous Structures

Upload a protein structure (PDB format) or a protein sequence (FASTA format) to predict the location of structurally conserved regions. The program uses features generated from the uploaded file and then a neural network to predict structural conservation. Using a PDB format allows the options of using structural, sequence, or both sets of features while using the FASTA format only allows the option of using sequence information. See the documentation for a more detailed explanation.


INPUT DATA
Choose to input a protein sequence OR upload a protein structure.

  Enter / Upload a sequence in the FASTA format


Upload a structure or input a PDB ID: and chain ID:


PROGRAM OPTIONS
Structural Features (Secondary structure, Cβ contacts)
Sequence Features (PSI-BLAST PSSM, PSI-BLAST residue conservation, PSI-BLAST amino acid fraction, Predicted secondary structure)
All Features


SUBMIT DATA
Results can be emailed to: (recommended)

When you have checked that all settings are correct, click