Citrus Sinensis ID: 000054
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2548 | 2.2.26 [Sep-21-2011] | |||||||
| Q6PNC0 | 3013 | DmX-like protein 1 OS=Mus | yes | no | 0.105 | 0.089 | 0.325 | 2e-36 | |
| Q8TDJ6 | 3036 | DmX-like protein 2 OS=Hom | yes | no | 0.134 | 0.112 | 0.305 | 2e-36 | |
| Q8BPN8 | 3032 | DmX-like protein 2 OS=Mus | no | no | 0.105 | 0.088 | 0.332 | 2e-35 | |
| Q9Y485 | 3027 | DmX-like protein 1 OS=Hom | no | no | 0.136 | 0.115 | 0.282 | 3e-35 | |
| P47104 | 1357 | Regulator of V-ATPase in | yes | no | 0.104 | 0.196 | 0.294 | 9e-29 | |
| Q9Y817 | 1297 | Regulator of V-ATPase in | yes | no | 0.098 | 0.194 | 0.280 | 5e-24 |
| >sp|Q6PNC0|DMXL1_MOUSE DmX-like protein 1 OS=Mus musculus GN=Dmxl1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 153/301 (50%), Gaps = 32/301 (10%)
Query: 1134 LAGVTDAEKMEILAVVDLLNEF-----DNKHSASVYENLDEPGQRFWVELRFQLLCFFRR 1188
L G+T E+M ++A+ D + +++ E LDE G +F + +R
Sbjct: 1496 LPGLTRMEQMSLMALADTIATTSTDIGESRDRNQGGETLDECGLKFLLAVRLHTFLTTSL 1555
Query: 1189 FGKLVSAEELAVDSRLIAWAFHSECQETLFGSILP----NEPTWPEMRALGVGFWYTDVT 1244
+ + AWAFHS +E L ++LP ++PTW E+RA+GVG+W +
Sbjct: 1556 PAYRAQLLHQGLSTGHFAWAFHSVAEEELL-NMLPAMQKDDPTWSELRAMGVGWWVRNAR 1614
Query: 1245 QLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQ 1304
LR +EK+A+ + + DP D A+ Y+A+ + V+ GL++ KD K + F NF+
Sbjct: 1615 ILRRCIEKVAKAAFHRNNDPLDAAIFYLAMKKKAVIWGLYRSQKDTK---MTQFFGHNFE 1671
Query: 1305 EEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEK 1364
EE+ + AALKNA+ LLG+ + E + AFFLLGG A+ VC L D+QLALVI RL E
Sbjct: 1672 EERWRKAALKNAFSLLGKQRFEHSAAFFLLGGCLKDAIEVCLEKLNDIQLALVIARLFES 1731
Query: 1365 HGGPLERNLVTKFILPSSI----------------ERGDYWLTSLLEWELGNYSQSFLTM 1408
+++ K IL + D +L S+ W L +YS + T+
Sbjct: 1732 E---FDKSATYKSILRKKVLGIGSPASELSSSSINAHHDPFLRSMAHWILEDYSAALETL 1788
Query: 1409 L 1409
+
Sbjct: 1789 I 1789
|
Mus musculus (taxid: 10090) |
| >sp|Q8TDJ6|DMXL2_HUMAN DmX-like protein 2 OS=Homo sapiens GN=DMXL2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 122/400 (30%), Positives = 185/400 (46%), Gaps = 58/400 (14%)
Query: 1134 LAGVTDAEKMEILAVVDLL----NEFDNKH--SASVYENLDEPGQRFWVELRFQLLCFFR 1187
L G+T E+M ++A+ D + E D S S + LDE G R+ + +R C
Sbjct: 1523 LPGLTRLEQMFLVALADTVATTSTELDESRDKSCSGRDTLDECGLRYLLAMRLHT-CLLT 1581
Query: 1188 RFGKLVSAEEL--AVDSRLIAWAFHSECQETLFG---SILPNEPTWPEMRALGVGFWYTD 1242
L + L V + AWAFHSE +E L +I +P W E+RA+G+G+W +
Sbjct: 1582 SLPPLYRVQLLHQGVSTCHFAWAFHSEAEEELINMIPAIQRGDPQWSELRAMGIGWWVRN 1641
Query: 1243 VTQLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRN 1302
+ LR +EK+A+ + + D D AL Y+++ + V+ GLF+ DEK + F S N
Sbjct: 1642 INTLRRCIEKVAKASFQRNNDALDAALFYLSMKKKAVVWGLFRSQHDEK---MTTFFSHN 1698
Query: 1303 FQEEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLV 1362
F E++ + AALKNA+ LLG+ + E + AFFLL G A+ VC + D+QLA+VI RL
Sbjct: 1699 FNEDRWRKAALKNAFSLLGKQRFEQSAAFFLLAGSLKDAIEVCLEKMEDIQLAMVIARLY 1758
Query: 1363 EKHGGPLERNLVTKFILPSSI--------------ERGDYWLTSLLEWELGNYSQSFLTM 1408
E E + IL I D +L SL W + +Y+++ T+
Sbjct: 1759 ESE---FETSSTYISILNQKILGCQKDGSGFSCKRLHPDPFLRSLAYWVMKDYTRALDTL 1815
Query: 1409 LGFQSTAVINNFAL---SSNSVAF-----------------MDPSIGLYCLMLANKNSMR 1448
L Q+ + + S N VAF P L L L + +
Sbjct: 1816 LE-QTPKEDDEHQVIIKSCNPVAFSFYNYLRTHPLLIRRNLASPEGTLATLGLKTEKNFV 1874
Query: 1449 NAIGEKNAAILGRWAALMRATALNRCGLPLEALDCLSSSP 1488
+ I ++ R A A + G P+ AL+ LS P
Sbjct: 1875 DKIN-----LIERKLFFTTANAHFKVGCPVLALEVLSKIP 1909
|
May serve as a scaffold protein for MADD and RAB3GA on synaptic vesicles. Homo sapiens (taxid: 9606) |
| >sp|Q8BPN8|DMXL2_MOUSE DmX-like protein 2 OS=Mus musculus GN=Dmxl2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 152/301 (50%), Gaps = 32/301 (10%)
Query: 1134 LAGVTDAEKMEILAVVDLL----NEFDNKHSA--SVYENLDEPGQRFWVELRFQLLCFFR 1187
L G+T E+M ++A+ D + E D S + LDE G R+ + +R C
Sbjct: 1522 LPGLTRLEQMFLVALADTVATTSTELDENRDKNYSGRDTLDECGLRYLLAMRLHT-CLLT 1580
Query: 1188 RFGKLVSAEEL--AVDSRLIAWAFHSECQETLFG---SILPNEPTWPEMRALGVGFWYTD 1242
L + L V + AWAFHSE +E L +I +P W E+RA+G+G+W +
Sbjct: 1581 SLPPLYRVQLLHQGVSTCHFAWAFHSEAEEELINMIPAIQRGDPQWSELRAMGIGWWVRN 1640
Query: 1243 VTQLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRN 1302
V LR +EK+A+ + + + D AL Y+++ + V+ GLF+ DEK + F S N
Sbjct: 1641 VNTLRRCIEKVAKAAFQRNNEALDAALFYLSMKKKAVVWGLFRSQHDEK---MTTFFSHN 1697
Query: 1303 FQEEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLV 1362
F E++ + AALKNA+ LLG+ + E + AFFLL G A+ VC + D+QLA+VI RL
Sbjct: 1698 FNEDRWRKAALKNAFSLLGKQRFEQSAAFFLLAGSLKDAIEVCLEKMEDIQLAMVIARLF 1757
Query: 1363 EKHGGPLERNLVTKFILPSSI--------------ERGDYWLTSLLEWELGNYSQSFLTM 1408
E E + IL I D +L SL W + +Y+++ T+
Sbjct: 1758 ESE---FETSSTYISILNQKILGCQKDGTGFDCKRLHPDPFLRSLAYWVVKDYTRALDTL 1814
Query: 1409 L 1409
L
Sbjct: 1815 L 1815
|
May serve as a scaffold protein for MADD and RAB3GA on synaptic vesicles. Mus musculus (taxid: 10090) |
| >sp|Q9Y485|DMXL1_HUMAN DmX-like protein 1 OS=Homo sapiens GN=DMXL1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 114/403 (28%), Positives = 184/403 (45%), Gaps = 54/403 (13%)
Query: 1134 LAGVTDAEKMEILAVVDLLNEF-----DNKHSASVYENLDEPGQRFWVELRFQLLCFFRR 1188
L G++ E+M ++A+ D + +++ + E LDE G +F + +R
Sbjct: 1498 LPGLSRMEQMSLMALADTIATTSTDIGESRDRSQGGETLDECGLKFLLAVRLHTFLTTSL 1557
Query: 1189 FGKLVSAEELAVDSRLIAWAFHSECQETLFGSILP----NEPTWPEMRALGVGFWYTDVT 1244
+ + AWAFHS +E L ++LP ++PTW E+RA+GVG+W +
Sbjct: 1558 PAYRAQLLHQGLSTSHFAWAFHSVAEEELL-NMLPAMQKDDPTWSELRAMGVGWWVRNTR 1616
Query: 1245 QLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQ 1304
LR +EK+A+ + +K DP D A+ Y+A+ + V+ GL++ EK+ + F NF+
Sbjct: 1617 ILRKCIEKVAKAAFYRKNDPLDAAIFYLAMKKKAVIWGLYRA---EKNTRMTQFFGHNFE 1673
Query: 1305 EEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEK 1364
+E+ + AALKNA+ LLG+ + E + AFFLL G A+ VC L D+QLALVI RL E
Sbjct: 1674 DERWRKAALKNAFSLLGKQRFEHSAAFFLLAGCLRDAIEVCLEKLNDIQLALVIARLYES 1733
Query: 1365 HGGPLERNLVTKFILPSSI----------------ERGDYWLTSLLEWELGNYSQSFLTM 1408
+ + K IL + D +L S+ W L +YS + T+
Sbjct: 1734 E---FDTSAAYKSILRKKVLGIDSPVSELCSLNINMHHDPFLRSMAYWILEDYSGALETL 1790
Query: 1409 LGFQSTAVINNFALSSNSVAFMDPSIGLYCLMLANKNSMRNAIGEKNA-----AILG--- 1460
+ + +SN F Y + + +R G + ++ G
Sbjct: 1791 IKQPIRENDDQVLSASNPTVF-----NFYNYLRTHPLLLRRHFGSSDTFSTHMSLTGKSG 1845
Query: 1461 ---------RWAALMRATALNRCGLPLEALDCLSSSPSTIGGT 1494
R A+A + G P+ AL+ LS P I T
Sbjct: 1846 LAGTINLSERRLFFTTASAHLKAGCPMLALEVLSKMPKVIKKT 1888
|
Homo sapiens (taxid: 9606) |
| >sp|P47104|RAV1_YEAST Regulator of V-ATPase in vacuolar membrane protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RAV1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 131 bits (329), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 141/278 (50%), Gaps = 12/278 (4%)
Query: 1203 RLIAWAFHSECQETLFGSILPNEPTWPEMRALGVGFWYTDVTQLRTRMEKLARLQYLK-- 1260
R ++WA HS+ +E L SI + +W R + +W + L + E +A+ ++ K
Sbjct: 904 RDVSWALHSDNKEILLSSIDRHITSWNRAREYRIAYWIKE-QDLVKKFEDIAKYEFSKDD 962
Query: 1261 KKDPKDCALLYIALNRIQVLAGLFK--ISKDEKDKPLVGFLSRNFQEEKNKAAALKNAYV 1318
K+DP CA+ Y+AL + Q+L L+K I E+ K +V F+S +F + + AALKNA+V
Sbjct: 963 KRDPSRCAIFYLALKKKQILLSLWKMAIGHPEQQK-MVRFISNDFTVPRWRTAALKNAFV 1021
Query: 1319 LLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHGGPLERNLVTKFI 1378
LL +H+ A FFLL V V + + D+ LA+ +CR+ E GP+ L+T +
Sbjct: 1022 LLSKHRYMDAAVFFLLTDSLKDCVNVLCKQVHDMDLAIGVCRVYEGDNGPVLGELLTAQM 1081
Query: 1379 LPSSIERGDYWLTSLLEWELGNYSQSFLTMLGF-----QSTAVINNFALSSNSVAFMDPS 1433
LP +I+ D W S + W+L + +L ++++++ + S DP+
Sbjct: 1082 LPETIKENDRWKASFIYWKLRKQEVAIKALLTAPIDLENNSSIVDKEVCVNRSFLVEDPA 1141
Query: 1434 IGLYCLMLANKNSMRNAIGEKNAAILGRWAALMRATAL 1471
+ L N+N ++ IG N ++R T +
Sbjct: 1142 LLYLYNHLRNRN-LKYFIGSLNVEAKIECTLILRVTDI 1178
|
Component of the RAVE complex, which is required for stable assembly of the vacuolar APTase complex V-ATPase under many conditions. Required for transport between the early endosome and the late endosome/prevacuolar compartment (PVC), suggesting that assembly of vacuolar ATPase at the early endosome is required for transport from the early endosome to the PVC. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q9Y817|RAV1_SCHPO Regulator of V-ATPase in vacuolar membrane protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rav1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 115 bits (288), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 142/271 (52%), Gaps = 19/271 (7%)
Query: 1128 LQNVYELAGVTDAEKMEILAVVDLLNEFDNKHSASVYENLDEPGQRFWVELRFQLLCFFR 1187
L V ++ +T + + +L +++ N+ + ++ ++LD G+R+ + L +L +
Sbjct: 865 LLKVKKVKTLTRSSQFLLLNLIEAFNK-----ARALRDSLDLNGKRYCIMLNQYVLSKHQ 919
Query: 1188 RFGKLVSAEELAVDSRLIAWAFHSECQETLFGSI--LPNEPT-WPEMRALGVGFWYTDVT 1244
R + ++ +R +AWAFHS + L L +P W + + FW +
Sbjct: 920 R-------QLTSLPTREMAWAFHSSNKAVLLDHTKKLHGKPLLWNAVEEYAIPFWLNE-Q 971
Query: 1245 QLRTRMEKLARLQY--LKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKP-LVGFLSR 1301
L+ +L+R Y + ++P++ +L +IAL++I V L++++ K+ V LS
Sbjct: 972 LLKDVFLELSRNHYAEIDDRNPENVSLYHIALHKINVFRDLWRLASWHKESARTVKLLSN 1031
Query: 1302 NFQEEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRL 1361
+F ++K K A KNA+ LL +H+ A AFFLL A VC RNL + LA+ + R+
Sbjct: 1032 DFSKKKWKVVASKNAFALLSKHRYFYASAFFLLADSCYDAAKVCIRNLKSISLAIAMTRV 1091
Query: 1362 VEKHGGPLERNLVTKFILPSSIERGDYWLTS 1392
E GP + L+ +++LP ++ + D WLT+
Sbjct: 1092 YEGDDGPTLKRLINEYVLPLAVSQNDRWLTN 1122
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2548 | ||||||
| 359489586 | 2572 | PREDICTED: uncharacterized protein LOC10 | 0.986 | 0.977 | 0.613 | 0.0 | |
| 224068002 | 2434 | predicted protein [Populus trichocarpa] | 0.941 | 0.986 | 0.570 | 0.0 | |
| 449433024 | 2491 | PREDICTED: uncharacterized protein LOC10 | 0.964 | 0.986 | 0.539 | 0.0 | |
| 255564651 | 2299 | nucleotide binding protein, putative [Ri | 0.883 | 0.979 | 0.584 | 0.0 | |
| 449478209 | 2419 | PREDICTED: uncharacterized LOC101204824 | 0.934 | 0.984 | 0.523 | 0.0 | |
| 334184951 | 2513 | transducin family protein / WD-40 repeat | 0.957 | 0.970 | 0.499 | 0.0 | |
| 297828387 | 2458 | transducin family protein [Arabidopsis l | 0.943 | 0.978 | 0.496 | 0.0 | |
| 4415937 | 2480 | hypothetical protein [Arabidopsis thalia | 0.936 | 0.962 | 0.494 | 0.0 | |
| 222618659 | 2435 | hypothetical protein OsJ_02193 [Oryza sa | 0.924 | 0.967 | 0.407 | 0.0 | |
| 356522498 | 2468 | PREDICTED: uncharacterized protein LOC10 | 0.644 | 0.665 | 0.534 | 0.0 |
| >gi|359489586|ref|XP_002264136.2| PREDICTED: uncharacterized protein LOC100255258 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3095 bits (8023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1575/2566 (61%), Positives = 1919/2566 (74%), Gaps = 53/2566 (2%)
Query: 10 LQNANPCVDPTEHLPLAFLRSEFIPTAPTRSTSTIDWLPDFAGYSWVAYGASSLLVISHF 69
+Q++ VD LPL F++S+ IP APT S +DWLPDFAG SWVAYGAS+LLVISHF
Sbjct: 23 MQDSITAVDLPGQLPLQFVKSDPIPPAPTPSQFAVDWLPDFAGLSWVAYGASTLLVISHF 82
Query: 70 PSPLSQEEALIGPIFRQVFALS-DNSLPVTSISWSPETPSIGQLAAASENCIFVFAHDSA 128
PSPLS EEALIGPIFRQV ++ D S V+ + WSP TPS+G+LA AS NC+ VF+HDS
Sbjct: 83 PSPLSSEEALIGPIFRQVVEIAADESAAVSVVGWSPATPSVGELAVASGNCVCVFSHDSE 142
Query: 129 SSKGSFCWSQNAILVQGTKVEAIEWTGSGDGIVAGGMETVLWKKKNTLWEIAWKFKENYP 188
++GSFCW Q A+LV TKVEAI+WTGSGDGI+AGG E VLWK K+ WEIAWKFK +P
Sbjct: 143 RAEGSFCWGQTAVLVHSTKVEAIKWTGSGDGIIAGGTEVVLWKNKSRSWEIAWKFKSEHP 202
Query: 189 QNLVSATWSIEGPSATAASMSQLDLLG---P-KEAGKCVFICCSDGKSEYIKLELCHPQP 244
Q VSATWSIEGP A+AA S+L + G P +A KCV +C +DG SEY+K EL HPQP
Sbjct: 203 QTFVSATWSIEGPLASAAYHSKLHIGGWFSPFNDASKCVLVCYNDGNSEYVKTELRHPQP 262
Query: 245 VSMVQWRPSTRRH-SPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGKTRKVAKDTNDHKTI 303
VSM+QWRPSTR+ S GD K RHVLLTCCLDGTVRLW E+D+G+ RK+ +TND KT+
Sbjct: 263 VSMIQWRPSTRQQQSKGDAKYPMRHVLLTCCLDGTVRLWSEIDNGRVRKIGTETNDQKTV 322
Query: 304 RRSFCVGAIIEINQALNGALGMDIVITWAKEIRCMFETGEGANHFISTGVYEHGGTGKCE 363
RRSF V A+IEINQ LNG LG ++ +TWA EI + +TGEGAN ST +EH GKCE
Sbjct: 323 RRSFRVAAVIEINQTLNGTLGTNVFVTWATEIAGIIKTGEGANQIFSTKHHEHEKAGKCE 382
Query: 364 WLVGYGPGSLVTLWAIHCLDDISPLRFPRVTLWKKQNL---ELEHPHNSGFSGFQGQSLL 420
WL+G+GPG +T WAIHCLDD SP+RFPRVTLWK+Q + E+ + HN+G S + QS+L
Sbjct: 383 WLIGFGPGMFLTFWAIHCLDDFSPVRFPRVTLWKRQEVQGAEIGNFHNTGNSNSEDQSVL 442
Query: 421 NKVVISRDCVSGLPTICSLVHLSHCNSLVWSLLHAQRSGDVEDVSSDKSSTGQILSCSAS 480
NKVVI R+ + G P CSL+ L CNSL WS L+ Q +D S +K + ILSC +
Sbjct: 443 NKVVIMRNLLFGPPIACSLIQLLPCNSLCWSFLYTQAFNGTQDGSINKFTRENILSCCSG 502
Query: 481 RILSIEGHTGKILQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDLPTLMPSWKL 540
L+I+GH+GKILQVAVHP + ELA SLDSNGLLL WSLSTISNCI L TL P+WKL
Sbjct: 503 ATLNIDGHSGKILQVAVHPYSCKVELAASLDSNGLLLLWSLSTISNCILGLSTLNPTWKL 562
Query: 541 CGKLRTRKSCSNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVCHYVCTI 600
CGK T+ S S YTSL WAPS+LDED +LLMGH GGID FIVK+SQ+E + ++C+ +CTI
Sbjct: 563 CGKFATQDSGSKYTSLHWAPSVLDEDCILLMGHAGGIDLFIVKVSQSEEEKVICYKLCTI 622
Query: 601 PFTGHGHYEDGPANIFSVPLPSCNDKTVMYNKFMLLGVWLKGLESLSWEITFHSFDLSES 660
PFT HG +DGPAN+FS+PL S +KT NKFM L VW+K ++LSW IT HS DLS S
Sbjct: 623 PFTKHGPCQDGPANVFSIPLLSACNKTFSSNKFMFLAVWMKPFQALSWAITLHSCDLSGS 682
Query: 661 CCGCIDD-NNTVKCSMCKFETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVVCPNNLV 719
C GC D NT + +FE F G+KY + VNPCSSQFP+PH + VTS+AVVCP N +
Sbjct: 683 CFGCSSDIGNTAENEEMRFENIFSGRKYSVLVNPCSSQFPDPHIHDQVTSYAVVCPANSI 742
Query: 720 P-MQQKLVYDNDPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGP 778
P +QQ V ND IP Y MATG SDG+L+LWRS S WELVGM VAHQGP
Sbjct: 743 PSLQQGQVSSNDLHIDIPAYHMATGCSDGTLKLWRSNSSRLSNPHFLWELVGMFVAHQGP 802
Query: 779 VSAISLTDGGRKIATVSAASHSNAVSNVRIWESVCVTELGSFVLEDTLSFDTNIVAVNWL 838
+SAISLTD G+KIAT+ A H + S +RIWESV +T GSFVLEDT+S D ++VA++WL
Sbjct: 803 ISAISLTDCGQKIATICMAGHLSTASTLRIWESVHLTGAGSFVLEDTVSVDGDVVALSWL 862
Query: 839 TLENGQSLLGVCLQNELKVYAQRHYGGQILLDTKNSLKMQNWFCLAFSPTFAA-HDFTWG 897
L NGQ LLGVC+QNEL+VYAQR GGQ LL + SL++ WFC+A + TF + HDF WG
Sbjct: 863 ALGNGQLLLGVCMQNELQVYAQRRCGGQTLLSSGKSLELHIWFCMASARTFPSIHDFLWG 922
Query: 898 RRAIAIVVHQSYLSIYSQFLFLIDKKHQAKCNSNVFID--NFCCHKSGINENIVSTIFTV 955
+A A+V+H +Y ++ Q+L +D+K Q+ C+ +F +I+ST +
Sbjct: 923 PKATAVVIHSNYFCLFGQWLLSVDRKDQSNCHPECTKGSPDFKFEADKDVLSIISTDSGI 982
Query: 956 CDSES-SAGDQRGDYESAPSVNIDMKNDHL-----VASDQLKCG-GAILGSWSMLEIAEK 1008
D ++ S D G+ +S +NI+M HL A ++K G GA LG WS+LE+AEK
Sbjct: 983 LDFKALSMEDSTGECKSKLPININMTG-HLSSSLFAARTRMKYGSGAKLGFWSILEVAEK 1041
Query: 1009 LRGSLPVYHPKALFLNIYSGNWKRAYVSVRHLVENLPSNYPSEKRYCYTKSSHIVPQILL 1068
L GSLPVYHP+AL +NIYSGNWKRAY++++HLVE L S + E+R+ KSSHI+PQI L
Sbjct: 1042 LCGSLPVYHPEALLMNIYSGNWKRAYIALQHLVECLTSTHAPERRHSTAKSSHIIPQIHL 1101
Query: 1069 STYFEGLLSKGSTDNGFQWSGLNTFSTS-LQFR----QFAYNMDLDASNS---SSSTKSE 1120
S YFEG LSK STD GFQWS +T TS QF+ QF+YN + DA + SSSTKSE
Sbjct: 1102 SNYFEGHLSKASTDKGFQWSREDTLVTSSAQFQRGPIQFSYNSESDAPRNMFSSSSTKSE 1161
Query: 1121 LSGFVELLQNVYELAGVTDAEKMEILAVVDLLNEFDNKHSASVYENLDEPGQRFWVELRF 1180
LS FVE L+ YELA +T +EKM+ILA++DLLNE +N HSAS Y +LDEPGQRFWV +RF
Sbjct: 1162 LSSFVEPLEKFYELAAITSSEKMQILAIIDLLNEVNNPHSASAYGSLDEPGQRFWVAVRF 1221
Query: 1181 QLLCFFRRFGKLVSAEELAVDSRLIAWAFHSECQETLFGSILPNEPTWPEMRALGVGFWY 1240
Q LCF RRFG+L S +EL VDS LIAWAFHS+CQE LFGSILPN+P+W EMR LGVGFW+
Sbjct: 1222 QQLCFARRFGRLASTDELVVDSGLIAWAFHSDCQENLFGSILPNDPSWQEMRTLGVGFWF 1281
Query: 1241 TDVTQLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLS 1300
T+ LRTRMEKLARLQYLK KDPKDC+LLYIALNR++VL GLFKISKDEKDKPLVGFLS
Sbjct: 1282 TNAQSLRTRMEKLARLQYLKNKDPKDCSLLYIALNRLKVLTGLFKISKDEKDKPLVGFLS 1341
Query: 1301 RNFQEEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICR 1360
RNFQEEKNKAAALKNAYVL+GRHQLELAIAFFLLGGD +SA+TVC +NLGD QLALVICR
Sbjct: 1342 RNFQEEKNKAAALKNAYVLMGRHQLELAIAFFLLGGDTSSAITVCTKNLGDEQLALVICR 1401
Query: 1361 LVEKHGGPLERNLVTKFILPSSIERGDYWLTSLLEWELGNYSQSFLTMLGFQSTAVINNF 1420
LVE HGGPLER+L++KFILPS+IE+GDYWL S++EWELGNY QSFL MLG+Q +VIN
Sbjct: 1402 LVEGHGGPLERHLISKFILPSAIEKGDYWLASIMEWELGNYFQSFLIMLGYQMDSVINKP 1461
Query: 1421 ALSSNSVAFMDPSIGLYCLMLANKNSMRNAIGEKNAAILGRWAALMRATALNRCGLPLEA 1480
ALSSN AF+DPSIG YCL LA KNSMRNA+GE+NAAILGRW LM ATAL R GLPLEA
Sbjct: 1462 ALSSNHAAFLDPSIGRYCLTLATKNSMRNAVGEQNAAILGRWGTLMMATALRRSGLPLEA 1521
Query: 1481 LDCLSSSPSTIGGTDQESVLNIGHSHILPEILKPSAATGSSNWLLRDVALHLESCAKLDL 1540
L+ LSSS S +G DQ S+ N+G S IL IL PS + SSNWL D A +LES A+LDL
Sbjct: 1522 LELLSSSLSNLGAADQRSISNVGKSEILHGILYPSPSD-SSNWLSGDAAFYLESLARLDL 1580
Query: 1541 SLQYFSKLIRDHPSWPDLGFGRASKCFMDFEIHQYEKLVQNFQQKLYTALAFFEQRFSMD 1600
++QY SKL+R+HPS P+ AS ++E HQYE ++ FQ KLY L FEQ+FS+
Sbjct: 1581 AMQYLSKLMREHPSCPE---KVASGGCREYESHQYEISLEKFQHKLYGGLETFEQKFSLS 1637
Query: 1601 SSSLIAKILSLLCNNGLLFIGYDLLHGYICQGKSQEKSSDTVDGLSLYFCQHKPLLKAAE 1660
SLI K+L L NN LLFIGYD+LH Y Q SQ++ DTV LY K LLKA E
Sbjct: 1638 GDSLINKVLVALSNNSLLFIGYDVLHRYKSQDHSQDRI-DTVHSSLLYSILPKQLLKATE 1696
Query: 1661 DISIFLSRFIAATSITCSHLKSTNSENVRHHEVRSRWSNAQGYYFQSIIFSLWSLRAAMR 1720
+ S SRFI A SITCS KS ++EN +A Y+ Q ++ SLWSLRA ++
Sbjct: 1697 EFSHLFSRFIVACSITCSQQKSCSTENDMSGATMCGCIDAGCYHLQDLMLSLWSLRAILK 1756
Query: 1721 TFSGSFPEELIT-PLFLLDLYEYYVHFASAWLQRDSKGLLQVLQPVLITYTNGHTPYEVD 1779
FS S +++I P+ LLDL EY ++F AW QR+ GL+ + +P+LITYT+GH +D
Sbjct: 1757 IFSVSCTDDVIKKPIILLDLIEYCLYFVCAWFQRNLNGLILMARPLLITYTDGHASCNID 1816
Query: 1780 MNNLKTFFHQSAELLTRNTSIDNMVGDLQVSKFVDDERSTDLMNSIPEDERWQIMGACLW 1839
M NLK HQ +E + N+ ID++ QV+K++ D +S D++ S+PEDER +I+G C+W
Sbjct: 1817 MENLKKALHQISESVDLNSLIDDVGVCQQVAKWMQDAQSGDILPSMPEDERQKILGVCIW 1876
Query: 1840 QHMSRFMKHKLNSMSVKLDENHSSRLLGGHISSWTSSLTNPESASIGLKEQMRLLTLFLA 1899
H+S M + LNS+ G SSW SS T E L E+++L+ L
Sbjct: 1877 HHISSSMINLLNSL--------------GDTSSWASSSTCCEPDGNSLMEKIKLVPLIFM 1922
Query: 1900 QLLKSALLHISSHHVKQLAFFLRYKVENGFDIPTRRWLQEATPSQSGTLYQHLNQIVVSM 1959
+ LK+ + +ISS+H KQLA FL K+E+G +PT WL++++ SQ ++ ++LNQ +++
Sbjct: 1923 KFLKTTVTYISSYHAKQLASFLLQKIEDGLHVPTLEWLEKSSQSQPRSIQKNLNQ-GINL 1981
Query: 1960 NIINNKDEAAISELLWDVCSDPSIIHEGFTQEKLNWRSYINCKLSKGWSHINEGVKLKHE 2019
NI+N +D+++ SE++ D+ +DP II E F QEK+NW Y+N K KGW I +G+ +HE
Sbjct: 1982 NIMNIEDKSSASEVIRDIFADPKIISESFVQEKINWSQYVNGKPFKGWGDIYKGIMREHE 2041
Query: 2020 IKKTCKNEDKLGSTLASGEVGSASKDLFRNSRTSPRSWHKDANMANEVIPFQAPKEICKR 2079
+T + + S AS GS + LFR++ T S KD A + IPFQ PKEI KR
Sbjct: 2042 SAETSDQDGRHMSNSASSGTGSPVRSLFRSTHTFLGSGQKDTIFAKDDIPFQNPKEIFKR 2101
Query: 2080 NGELFEALCVNSIDQRQGAIASNRKGIVFFNLEDEIPLHDQLKYIWADADWPQNGWAGSE 2139
NGEL EAL +NS+ Q Q +A ++KGI+FFN EDE+P DQ +YIW++ADWPQNGWAGSE
Sbjct: 2102 NGELLEALRINSVHQGQAVLAGHKKGIIFFNWEDELPFRDQSEYIWSEADWPQNGWAGSE 2161
Query: 2140 STPVPTFVSPGVGLGSNKGAHLGLGGATIGVGSLARPGRDLTGGLAFGIPGYAGIGASAL 2199
STPVPT VSPGVGLGS KGAHLGLGGATIGVGSLARPGRDLTGG AFGIPGYAG+GAS L
Sbjct: 2162 STPVPTPVSPGVGLGSKKGAHLGLGGATIGVGSLARPGRDLTGGGAFGIPGYAGMGASGL 2221
Query: 2200 GWETQDDFEDYVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGV 2259
GWETQDDFE++VDPPATVENISTRA SSHP RPFFL GSSNTHIYLWEFGKDKATATYGV
Sbjct: 2222 GWETQDDFEEFVDPPATVENISTRALSSHPSRPFFLAGSSNTHIYLWEFGKDKATATYGV 2281
Query: 2260 LPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSS 2319
LPAANVPPPYALASISA+QFDH GHRFA+AALDGTVCTWQLEVGGRSN+RP ES LCF+
Sbjct: 2282 LPAANVPPPYALASISAVQFDHCGHRFATAALDGTVCTWQLEVGGRSNIRPTESSLCFNG 2341
Query: 2320 HAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379
HA DV+Y+TSSGS+IAA+GHSSNG+NV++WDTLAPP++SRASI CHEGGARS+ VF+N +
Sbjct: 2342 HASDVTYVTSSGSIIAASGHSSNGVNVIIWDTLAPPSTSRASIMCHEGGARSLCVFNNVI 2401
Query: 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKP 2439
GSGS+SPLIVTGGKGGDVG+HDFRYIATG+TK+H+H+D+G SIN+ A++Q G SK
Sbjct: 2402 GSGSISPLIVTGGKGGDVGLHDFRYIATGRTKRHRHADKGEQSINSSLMANSQAGLPSKI 2461
Query: 2440 GDQ--NGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHE 2497
GDQ NGMLWYIPKAHLGSVT+IST+PNTSLFLTGSKDGDVKLWDA A+LV+HW KLHE
Sbjct: 2462 GDQNLNGMLWYIPKAHLGSVTKISTIPNTSLFLTGSKDGDVKLWDANRAKLVFHWPKLHE 2521
Query: 2498 RHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGGDGSVKLIQLED 2543
RHTFLQP++RGFGGVVRA VTDIQVVS GFL+CGGDGSVKLI+L D
Sbjct: 2522 RHTFLQPNTRGFGGVVRAAVTDIQVVSHGFLTCGGDGSVKLIELRD 2567
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068002|ref|XP_002302640.1| predicted protein [Populus trichocarpa] gi|222844366|gb|EEE81913.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2821 bits (7314), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1472/2579 (57%), Positives = 1804/2579 (69%), Gaps = 179/2579 (6%)
Query: 1 MPEAESGCSLQNANPCVDPTEHLPLAFLRSEFIPTAPTRSTSTIDWLPDFAGYSWVAYGA 60
MPE + + + ++PT+HLPL+ RS+ IP APTRS STIDWLPDF+GYSWVAYGA
Sbjct: 1 MPETSTASPTRAS---INPTDHLPLSLFRSDIIPPAPTRSASTIDWLPDFSGYSWVAYGA 57
Query: 61 SSLLVISHFPSPLSQEEALIGPIFRQVFALS-DNSLPVTSISWSPETPSIGQLAAASENC 119
SSLLVISH PSPLS EEA IGPI +QVF LS D+S PV S+SWSP TPSIG+LAAAS+NC
Sbjct: 58 SSLLVISHLPSPLSPEEAAIGPILQQVFELSSDDSSPVKSVSWSPVTPSIGELAAASDNC 117
Query: 120 IFVFAHDSASSKGSFCWSQNAILVQGTKVEAIEWTGSGDGIVAGGMETVLWKKKNTLWEI 179
I VF+HDSASSKGSFCWSQNA+LVQ TKV AI WTGSGDGIV+GG++ VLW+++N WEI
Sbjct: 118 ISVFSHDSASSKGSFCWSQNAMLVQSTKVGAITWTGSGDGIVSGGIDVVLWRRRNMSWEI 177
Query: 180 AWKFKENYPQNLVSATWSIEGPSATAASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLEL 239
AWKFK + PQNLVSATWSIEGPSATAA +S++D+ G + CV +C +G SEY+K EL
Sbjct: 178 AWKFKRDQPQNLVSATWSIEGPSATAAYLSKVDVKGSDQTSNCVLVCYGNGTSEYVKTEL 237
Query: 240 CHPQPVSMVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGKTRKVAKDTND 299
HPQPVS +QWRPST + + D K +RHVLLTCCLDGT+RLW E+DSGK RK+ KD +D
Sbjct: 238 HHPQPVSKIQWRPSTGQQAQRDKKHLRRHVLLTCCLDGTLRLWTEVDSGKVRKLGKDNHD 297
Query: 300 HKTIRRSFCVGAIIEINQALNGALGMDIVITWAKEIRCMFETGEGANHFISTGVYEHGGT 359
HKT+R+SFC+ A+IEINQ L G LGMD+ +WA EI ++ GEG + S H
Sbjct: 298 HKTVRKSFCIAAVIEINQVLKGTLGMDVFFSWAAEIGGIYRIGEGISQTFSVEGNGHDRV 357
Query: 360 GKCEWLVGYGPGSLVTLWAIHCLDDISPLRFPRVTLWKKQNLE-LE--HPHNSGFSGFQG 416
G+CEWL+G+GPG +T WAIHCLDDISP+RFPRVTLWK Q LE LE H H +GF+ F
Sbjct: 358 GRCEWLIGFGPGRGITFWAIHCLDDISPIRFPRVTLWKTQELEDLEAGHLHGAGFANFNA 417
Query: 417 QSLLNKVVISRDCVSGLPTICSLVHLSHCNSLVWSLLHAQRSGDVEDVSSDKSSTGQILS 476
LL+KVV+ R+C+SG P ICSL+HLS CN LV SLL++Q D+ED S +KS + S
Sbjct: 418 WLLLDKVVVLRNCLSGPPNICSLMHLSPCNFLVRSLLYSQIPSDIEDASFNKSKIDKYSS 477
Query: 477 CSASRILSIEGHTGKILQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDLPTLMP 536
CS+ +L+ GHTGKILQVA+HP + E ELAVSLDS+GLLLFW +STISNC L+P
Sbjct: 478 CSSGGVLN-GGHTGKILQVAMHPHIYEVELAVSLDSDGLLLFWIVSTISNCSLGPAKLIP 536
Query: 537 SWKLCGKLRTRKSCSNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVCHY 596
WKL GKL T SCS YTSLRWAPS L ED VLL+GH GGIDCFIVKISQ + I+CHY
Sbjct: 537 GWKLSGKLATYDSCSKYTSLRWAPSTLGEDHVLLVGHAGGIDCFIVKISQICKEGIICHY 596
Query: 597 VCTIPFTGHGHYEDGPANIFSVPLPSCNDKTVMYNKFMLLGVWLKGLESLSWEITFHSFD 656
+ TIP TGHG +EDGP NIF+VPLPS +KT YN+F+LL +WLKG + +SWE+T HSFD
Sbjct: 597 IGTIPLTGHGPFEDGPTNIFAVPLPSSCNKTFRYNRFLLLAIWLKGFQPISWEVTLHSFD 656
Query: 657 LSESCCGC-IDDNNTVKCSMCKFETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVVCP 715
LS CC C DD NT + FE TF ++Y +GV+PCSS PEP+ + +TSF+VVCP
Sbjct: 657 LSGRCCDCKFDDKNT---PVLNFENTFADRRYCVGVDPCSSHLPEPYCHDQITSFSVVCP 713
Query: 716 NNLVPMQQKLVYDNDPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAH 775
+ + M + L + D CS +P Y MATG SDGSL+LWRS ST +PWELVG VAH
Sbjct: 714 GDFISMPESLGSNKDLCSGVPAYVMATGCSDGSLKLWRSNSSKQSTPQIPWELVGKFVAH 773
Query: 776 QGPVSAISLTDGGRKIATVSAASHSNAVSNVRIWESVCVTELGSFVLEDTLSFDTNIVAV 835
QGPVSAI LT GRKIAT+SA SH + S + +WE+V V GSF+LED ++ +++++
Sbjct: 774 QGPVSAICLTACGRKIATISAGSHLDDTSILHVWEAVHVIGAGSFILEDRIAVGRDVISL 833
Query: 836 NWLTLENGQSLLGVCLQNELKVYAQRHYGGQILLDTKNSLKMQNWFCLAFSPTFAA-HDF 894
NWLTL NGQ LG+C+ NEL+VYAQ+H+GGQ LL + SL + +W C+A S TF A DF
Sbjct: 834 NWLTLGNGQLFLGICMHNELQVYAQKHHGGQTLL-SPQSLNVNSWSCIAVSHTFPAIRDF 892
Query: 895 TWGRRAIAIVVHQSYLSIYSQFLFLIDKKHQAKCNSNVFIDNFCCHKSGI-----NENIV 949
WG A AI+VH SY+S+ SQ+LFL K K NV + +G E ++
Sbjct: 893 LWGPNATAIIVHDSYISLLSQWLFLEGDKQWGKYPPNVIREELAEKLTGTLAVYHPEALI 952
Query: 950 STIFTVCDSESSAGDQRGDYESAPSVNIDMKNDHLVASDQLKCGGAILGSWSMLEIAEKL 1009
I++ G+ + Y S HLV + L G A AEK+
Sbjct: 953 MNIYS--------GNWKRAYVSV---------RHLV--EYLSSGCA----------AEKI 983
Query: 1010 RGSLPVYHPKALFLNIYSGNWKRAYVSVRHLVENLPSNYPSEKRYCYTKSSHIVPQILLS 1069
S H K + I N+ ++ N + ++ R T SS S
Sbjct: 984 YNS--ADHSK-IVPQILLSNYFEGFLLKDSGSTNKGFQWSADARL-PTSSSQFFAYNFTS 1039
Query: 1070 TYFEGLLSKGSTDNGFQWSGLNTFSTSLQFRQFAYNMDLDASNSSSSTKSELSGFVELLQ 1129
+ + ST S L+ F+ +L+ F +L+ KSE+ ++LL
Sbjct: 1040 DASNNMFAASSTK-----SELSAFAETLEKYDFESLTNLE--------KSEMLAIIDLLS 1086
Query: 1130 NVYELAGVTDAEKMEILAVVDLLNEFDNKHSASVYENLDEPGQRFWVELRFQLLCFFRRF 1189
+V +HSA Y NLDEPGQRFWV L+FQ L FFR F
Sbjct: 1087 DV--------------------------QHSACAYANLDEPGQRFWVSLKFQQLHFFRSF 1120
Query: 1190 GKLVSAEELAVDSRLIAWAFHSECQETLFGSILPNEPTWPEMRALGVGFWYTDVTQLRTR 1249
G+ S EEL DSRL++WAFHS+CQE L S LPNEP+W EM+ LGVGFW+T+V QLR R
Sbjct: 1121 GRSPSVEELVGDSRLMSWAFHSDCQENLLSSFLPNEPSWKEMQTLGVGFWFTNVAQLRAR 1180
Query: 1250 MEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQEEKNK 1309
MEKLAR QYL+KKDPKD ALLYI LNR+ VL+GLFKISKDEKDKPLV FLSRNFQEEKNK
Sbjct: 1181 MEKLARSQYLRKKDPKDSALLYIVLNRLPVLSGLFKISKDEKDKPLVAFLSRNFQEEKNK 1240
Query: 1310 AAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHGGPL 1369
AAALKNAYVL+GRHQLELAIAFFLLGGD SA+T+CA+N GD QLALVICRL+E GGPL
Sbjct: 1241 AAALKNAYVLMGRHQLELAIAFFLLGGDTYSAITICAKNFGDEQLALVICRLIEGRGGPL 1300
Query: 1370 ERNLVTKFILPSSIERGDYWLTSLLEWELGNYSQSFLTMLGFQSTAVINNFALSSNSVAF 1429
E +L+TKFILPS+ ERGDYWLTSLLEWELGNYSQSFL+MLG Q++++ + ALSSN+ AF
Sbjct: 1301 EHHLITKFILPSASERGDYWLTSLLEWELGNYSQSFLSMLGLQASSLTDKSALSSNNAAF 1360
Query: 1430 MDPSIGLYCLMLANKNSMRNAIGEKNAAILGRWAALMRATALNRCGLP------------ 1477
MDP IGL+CL LA+KNSMRNA+GE+NAAIL RWA +M ATA NRCGLP
Sbjct: 1361 MDPHIGLHCLSLASKNSMRNAVGEQNAAILRRWATIMAATAFNRCGLPVSSLLCHILKTA 1420
Query: 1478 -----LEALDCLSSSPSTIGGTDQESVLNIGHSHILPEILKPSAATGSSNWLLRDVALHL 1532
LEAL+CL SS + +GG D SV ++ S IL IL P A+ S NWL DVAL L
Sbjct: 1421 ESFMQLEALECLQSSLNILGGIDPGSVSDVDQSQILHGILNPFASE-SCNWLSGDVALCL 1479
Query: 1533 ESCAKLDLSLQYFSKLIRDHPSWPD--LGFGRASKCFMDFEIHQYEKLVQNFQQKLYTAL 1590
+S KLDL+LQYFSKL+ +HPSW + +G + D EIHQ+EKL++ F++KLYT L
Sbjct: 1480 QSHGKLDLALQYFSKLMSEHPSWLNTIVGSIQPGTSSKDCEIHQHEKLLEEFREKLYTGL 1539
Query: 1591 AFFEQRFSMDSSSLIAKILSLLCNNGLLFIGYDLLHGYICQGKSQEKSSDTVDGLSLYFC 1650
FEQ+F + S +I IL C+NGL FIG+DL+ Y + +Q+K SD V+ LY
Sbjct: 1540 LMFEQKFLVVPSCVIKMILVWSCSNGLPFIGHDLIVNYASRNHTQDK-SDGVESFILYPL 1598
Query: 1651 QHKPLLKAAEDISIFLSRFIAATSITCSHLKSTNSENVRHHEVRSRWSNAQGYYFQSIIF 1710
HKP LK ED S+ LSRFI + S+TC K E EV+S WS+ G+YFQ I+
Sbjct: 1599 LHKPCLKFMEDASLLLSRFITSCSVTCFQPKPFYIEGTMSVEVKSIWSDMHGFYFQGIMQ 1658
Query: 1711 SLWSLRAAMRTFSGSFPEELITPLFLLDLYEYYVHFASAWLQRDSKGLLQVLQPVLITYT 1770
+L SLRAAMR FS S E++ L +LDL+EYY++FASAWLQR SKGLL ++QP+LIT T
Sbjct: 1659 TLRSLRAAMRIFSSS--EDVSRSLVILDLFEYYIYFASAWLQRKSKGLLLMVQPLLITLT 1716
Query: 1771 NGHTPYEVDMNNLKTFFHQSAELLTRNTSIDNMVGDLQVSKFVDDERSTDLMNSIPEDER 1830
+GHTPYEVD+ NLK+ H AE L + SID+ +V K E+ M S +DE+
Sbjct: 1717 SGHTPYEVDIGNLKSILHHIAE-LPFSLSIDDAGSGHEVVKCSSHEQDGQTMLSFSKDEK 1775
Query: 1831 WQIMGACLWQHMSRFMKHKLNSMSVKLDENHSSRLLGGHISSWTSSLTNPESASIGLKEQ 1890
W ++GACLW HMSRFMKH+L+ +S+KL++ S + G++SS SSLT S SI KE+
Sbjct: 1776 WHVVGACLWMHMSRFMKHQLHLLSIKLEDGCFSGVSHGNVSSLASSLTIFGSDSISRKEE 1835
Query: 1891 MRLLTLFLAQLLKSALLHISSHHVKQLAFFLRYKVENGFDIPTRRWLQEATPSQSGTLYQ 1950
+ +L LA+LL++ L+H+SS+HVK L FL+ +VEN IPT W++E++ SQ+ LYQ
Sbjct: 1836 IGFCSLILAKLLRTMLVHVSSYHVKLLGLFLQQEVENRLQIPTLVWMKESSLSQAKALYQ 1895
Query: 1951 HLNQIVVSMNIINNKDEAAISELLWDVCSDPSIIHEGFTQEKLNWRSYINCKLSKGWSHI 2010
VS +++N+KDE + ++LWD C+DP ++ EGF QE++N + N K +GWS
Sbjct: 1896 D-----VSADMMNSKDELSSFDVLWDACADPRMVSEGFVQEEINLSLFFNHKSYEGWSDE 1950
Query: 2011 NEGVKLKHEIKKTCKNEDKLGSTLASGEVGSASKDLFRNSRTSPRSWHKDANMANEVIPF 2070
+ + E + TC++E KLG+ + E+GS S M EV F
Sbjct: 1951 YMSITGELETEDTCEHELKLGNHPSGDEIGSPS-----------------IVMTKEVSHF 1993
Query: 2071 QAPKEICKRNGELFEALCVNSIDQRQGAIASNRKGIVFFNLEDEIPLHDQLKYIWADADW 2130
Q K + KR+GEL EALC+NS+D+RQ A+ASNRKGIVFF+ E IP DQ +YIW+DADW
Sbjct: 1994 QNAKVVHKRDGELVEALCINSVDERQAALASNRKGIVFFSWEVGIPFGDQSEYIWSDADW 2053
Query: 2131 PQNGWAGSESTPVPTFVSPGVGLGSNKGAHLGLGGATIGVGSLARPGRDLTGGLAFGIPG 2190
P NGWAG+ESTP+PT VSPGVGLGS KGAHLGLG
Sbjct: 2054 PPNGWAGAESTPIPTCVSPGVGLGSTKGAHLGLG-------------------------- 2087
Query: 2191 YAGIGASALGWETQDDFEDYVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGK 2250
LGWE Q+DFE++VDP ATVEN STRAFSSHP RPFFL GSSNTHIYLWEFGK
Sbjct: 2088 --------LGWEVQEDFEEFVDPLATVENTSTRAFSSHPSRPFFLAGSSNTHIYLWEFGK 2139
Query: 2251 DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRP 2310
+KATATYGVLPAANVPPPYALASISA+QFDHYGHRFA+AALDGTVCTWQLEVGGRSN+ P
Sbjct: 2140 EKATATYGVLPAANVPPPYALASISAVQFDHYGHRFATAALDGTVCTWQLEVGGRSNIHP 2199
Query: 2311 MESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGAR 2370
ESCLC + HA DV+YITSSGSVIAA G+SSNG NVV+WDTLAPPT+SRASI CHEGGAR
Sbjct: 2200 TESCLCLNGHASDVTYITSSGSVIAATGYSSNGANVVIWDTLAPPTTSRASIVCHEGGAR 2259
Query: 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHAD 2430
SISVFDND+GSGS+SPLIVTGGK GDVG+HDFRYIATG+TK+H + S+I D
Sbjct: 2260 SISVFDNDIGSGSISPLIVTGGKNGDVGLHDFRYIATGRTKRHNMNSNLPSNI------D 2313
Query: 2431 AQTGSGSKPGDQ--NGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQL 2488
QTG G + G Q NGMLWY+PKAHLGSVT+IST+P+TSLFLTGSKDGD+KLWDAKAA+L
Sbjct: 2314 MQTGVGRQLGGQNPNGMLWYMPKAHLGSVTKISTIPHTSLFLTGSKDGDIKLWDAKAAKL 2373
Query: 2489 VYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGGDGSVKLIQLEDYQHR 2547
V HW KLHER TFLQPSSRGFGGVVRA VTDIQVVS GFLSCGGDG VK +QL+D Q R
Sbjct: 2374 VCHWPKLHERRTFLQPSSRGFGGVVRAAVTDIQVVSHGFLSCGGDGIVKFVQLKDKQCR 2432
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433024|ref|XP_004134298.1| PREDICTED: uncharacterized protein LOC101204824 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2620 bits (6792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1378/2552 (53%), Positives = 1779/2552 (69%), Gaps = 94/2552 (3%)
Query: 17 VDPTEHLPLAFLRSEFIPTAPTRST---STIDWLPDFAGYSWVAYGASSLLVISHFPSPL 73
+DP LPL L SE IP AP R S+IDW+PDFAGY+WVAYGASSLLVISHFPSPL
Sbjct: 8 MDPISRLPLPLLGSEPIPPAPNRLDPLGSSIDWIPDFAGYAWVAYGASSLLVISHFPSPL 67
Query: 74 SQEEALIGPIFRQVFALSDNSL-PVTSISWSPETPSIGQLAAASENCIFVFAHDSASSKG 132
S E GPIFRQV LS + L V ++SWSP PS G+LAAA+ N I+VF+HD +S+G
Sbjct: 68 SPHETKFGPIFRQVLELSGDHLSAVNAVSWSPVLPSEGELAAAAGNRIWVFSHDLGASRG 127
Query: 133 SFCWSQNAILVQGTKVEAIEWTGSGDGIVAGGMETVLWKKKNTLWEIAWKFKENYPQNLV 192
SFCW QN++LVQ KVEAI+WTGSGDGI+A G+E VLWK N WEIAWKFK + PQ LV
Sbjct: 128 SFCWRQNSVLVQSLKVEAIQWTGSGDGIIACGVEVVLWKNTNKSWEIAWKFKPDVPQTLV 187
Query: 193 SATWSIEGPSATA--ASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQW 250
SA+WS EGP ATA A +S+ + + + A + V + S+G+ ++K+ELCHP P++++QW
Sbjct: 188 SASWSTEGPFATAPHARISKTENMLTERACRSVLVSQSEGEYGHVKIELCHPLPITVIQW 247
Query: 251 RPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGKTRKVAKDTNDHKTIRRSFCVG 310
RPS + P K S R+VLLTCCLDGTVRLW E ++GK RK +KD N+ K++RR F V
Sbjct: 248 RPSV--NGPEIGKHSPRNVLLTCCLDGTVRLWSETENGKVRKFSKDVNNKKSMRRHFSVA 305
Query: 311 AIIEINQALNGALGMDIVITWAKEIRCMFETGEGANHFISTGVYEHGGTGKCEWLVGYGP 370
A++EINQAL G LGMD+ +TWA EIR M + E S+ +E G CEWL+ GP
Sbjct: 306 AVVEINQALKGTLGMDLFVTWATEIRGMCQPFEVTKKVQSSVGFEQNKAGNCEWLISLGP 365
Query: 371 GSLVTLWAIHCLDDISPLRFPRVTLWKKQNL---ELEHPHNSGFSGFQGQSLLNKVVISR 427
GSLVT WA+HCLDD+SPLRFP+VTLWKKQ L E+ + G + + LL KVVISR
Sbjct: 366 GSLVTFWAVHCLDDVSPLRFPQVTLWKKQELKGFEVGRHYTDGCTNLSNKFLLKKVVISR 425
Query: 428 DCVSGLPTICSLVHLSHCNSLVWSLLHAQRSGDVEDVSSDKSSTGQILSCSASRILSIEG 487
SG P+ICSL+ L CNSLVWSLL A DV D S D+ + SCS S L++ G
Sbjct: 426 IHQSGSPSICSLIQLLPCNSLVWSLLSAHTLTDVGDASFDQKRLESLSSCSFSSQLNLSG 485
Query: 488 HTGKILQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDLPTLMPSWKLCGKLRTR 547
H GKIL VAVHP E ++A SLDSNGLLLFWSLS+ISNC PTL P+W+LCGKL T+
Sbjct: 486 HAGKILHVAVHPYNCEVKIAASLDSNGLLLFWSLSSISNCALGSPTLTPTWELCGKLVTQ 545
Query: 548 KSCSNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVCHYVCTIPFTGHGH 607
SCS YTS++WAPS+LDE+++LLMGH GID F V+ISQ++ ++ CHY+CTIPFTGHG
Sbjct: 546 DSCSKYTSVQWAPSILDEELILLMGHARGIDFFAVRISQSDEENTECHYLCTIPFTGHGP 605
Query: 608 YEDGPANIFSVPLPSCNDKTVMYNKFMLLGVWLKGLESLSWEITFHSFDLSESCCGC--- 664
+E+GP NIFS+ LPS + T +NKFMLLG+W+KG ++LSWEIT H++D+S + C
Sbjct: 606 FENGPTNIFSILLPSDCNITYKFNKFMLLGIWMKGFQALSWEITLHAYDISGTGLHCKCD 665
Query: 665 IDDNNTVKCSMCKFETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVVCPNNLVPMQQK 724
ID+ N + S+ FE+ F KKY + + PCSSQ P + +TSFAVV VP+QQK
Sbjct: 666 IDNENRAELSILTFESAFGSKKYCVSIIPCSSQLPNSQIHDQITSFAVVHQGTFVPVQQK 725
Query: 725 LVYDNDPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAISL 784
L +P + P Y MATG +DG L+LW+S +G S +PWELV ++VAHQGP++A+SL
Sbjct: 726 LASSGEPST--PAYIMATGSADGCLKLWKSNVGKPSIFHVPWELVCVVVAHQGPITALSL 783
Query: 785 TDGGRKIATVSAASHSNAVSNVRIWESVCVTELGSFVLEDTLSFDTNIVAVNWLTLENGQ 844
TD GRKIAT+S + S+V +WE + G + ED LSF++NI+AV+WLTL NGQ
Sbjct: 784 TDCGRKIATISKDNLECKTSSVHLWE-LAYLGAGILLFEDELSFESNIIAVDWLTLGNGQ 842
Query: 845 SLLGVCLQNELKVYAQRHYGGQILLDTKNSLKMQNWFCLAFSPTFAAH-DFTWGRRAIAI 903
LLG+CLQNEL VY+ + +G LL+T SL + W C+ S T ++ F WG R AI
Sbjct: 843 FLLGICLQNELCVYSLKRFGCHTLLETTKSLDTKTWICIGISRTLPSNCGFLWGPRTTAI 902
Query: 904 VVHQSYLSIYSQFLFLIDKKHQAKCNSNVFIDNFCCHKSGINENIVSTIFTVCDSESSAG 963
V+H Y I S +LFL H A CN++ + H +G N NI +F
Sbjct: 903 VLHDRYFCIVSPWLFLGVTNHDAMCNTHYIGETKTHHVNGTNTNISVAVF---------A 953
Query: 964 DQRGDYESAPSVNIDMKNDHLVASDQLKCGGAILGSWSMLEIAEKLRGSLPVYHPKALFL 1023
D+ ++ P D + + K LG SM ++ +KL GSL +HP+AL
Sbjct: 954 DKCCGIKTLP--------DDIY---ERKYRPGSLGLISMPDVVDKLCGSLSSFHPQALLF 1002
Query: 1024 NIYSGNWKRAYVSVRHLVENLPSNYPSEKRYCYTKSSHIVPQILLSTYFEGLLSKGSTDN 1083
NIYSG WKRAY ++ HL+E+L S+ S YT +P+I LS YFEG++ K STD
Sbjct: 1003 NIYSGKWKRAYSALSHLIEHLSSDKKSSANSTYT-----IPEIPLSDYFEGVI-KTSTDK 1056
Query: 1084 GFQWSGLNTFSTSLQFR----QFAYNMDLDASNSS---SSTKSELSGFVELLQNVYELAG 1136
G QWS T S S QF+ Q+A+N D ++++S SSTKSE S F+E L+ +YELAG
Sbjct: 1057 GVQWS---TNSLSSQFKEGVSQWAFNWDSISNDNSFVPSSTKSEFSSFIEPLEKLYELAG 1113
Query: 1137 VTDAEKMEILAVVDLLNEFDNKHSASVYENLDEPGQRFWVELRFQLLCFFRRFGKLVSAE 1196
+T EK + LA+VDLL E NK S+S YE+LDEPG+R+W+ RFQ L F RR + S E
Sbjct: 1114 LTSMEKTQTLAIVDLLGEISNKSSSSAYESLDEPGRRYWIAWRFQQLQFLRRESRSASME 1173
Query: 1197 ELAVDSRLIAWAFHSECQETLFGSILPNEPTWPEMRALGVGFWYTDVTQLRTRMEKLARL 1256
ELA+DS+LI WA+HS+CQE L S+ NEPTW EMR+LGVG W+T+ TQLRTRMEKLAR
Sbjct: 1174 ELAIDSKLIGWAYHSDCQEILLNSVSSNEPTWQEMRSLGVGIWFTNTTQLRTRMEKLARS 1233
Query: 1257 QYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQEEKNKAAALKNA 1316
QYLKKKDPKDC LLY+ LNRIQVLAGLFKIS+DEKDKPLVGFLSRNFQEEKNKAAALKNA
Sbjct: 1234 QYLKKKDPKDCMLLYVTLNRIQVLAGLFKISRDEKDKPLVGFLSRNFQEEKNKAAALKNA 1293
Query: 1317 YVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHGGPLERNLVTK 1376
YVLLGRHQLELA+AFFLLGGD+ SAV+VCA+NLGD QLALVIC LVE GGPL+++L+TK
Sbjct: 1294 YVLLGRHQLELAVAFFLLGGDSYSAVSVCAKNLGDEQLALVICHLVEGRGGPLQQHLITK 1353
Query: 1377 FILPSSIERGDYWLTSLLEWELGNYSQSFLTMLGFQSTAVINNFALSSNSVAFMDPSIGL 1436
F+LPS+IE+GD WL S+LEWELGNY++SFL ML S +V LSS +A +DPS+G+
Sbjct: 1354 FMLPSAIEKGDTWLASILEWELGNYTRSFLNMLRLDSNSVTGPPFLSSKHIALLDPSVGM 1413
Query: 1437 YCLMLANKNSMRNAIGEKNAAILGRWAALMRATALNRCGLPLEALDCLSSSPSTIGGTDQ 1496
YCL+LA KNSM+ A+G ++A IL + A LM AT+LNR GLPLEAL+ +S+ S +D
Sbjct: 1414 YCLLLATKNSMKKAVGVQSAEILCQLATLMMATSLNRRGLPLEALEHVSTCGSITDVSDG 1473
Query: 1497 ESVLNIGHSHILPEILKPSAATGSSNWLLRDVALHLESCAKLDLSLQYFSKLIRDHPSWP 1556
+ ++I + I + S SS+WL + A+HLE KLDL+ QYFSKLIR HPSWP
Sbjct: 1474 TNKVDIQCFDTISNICQKSPGD-SSSWLSVEFAVHLEHQVKLDLAAQYFSKLIRKHPSWP 1532
Query: 1557 DLGFGRAS--KCFMDFEIHQYEKLVQNFQQKLYTALAFFEQRFSMDSSSLIAKILSLLCN 1614
+ F C ++E+ YEK ++++Q KL A FE +FS+ +SL++ +L LCN
Sbjct: 1533 TINFESVGCMSCSKEYEM-DYEKSLESYQHKLSVGFAQFEMKFSLLPASLVSMMLLFLCN 1591
Query: 1615 NGLLFIGYDLLHGYICQGKSQEKSSDTVDGLSLYFCQHKPLLKAAEDISIFLSRFIAATS 1674
GL FIG D++ G+ Q +K+ T L ++ HK LLK A +IS SR+ A S
Sbjct: 1592 LGLQFIGNDIVRGFTSQECPDDKNLTTYSFL-VHRLLHKALLKTAREISFSASRYTIACS 1650
Query: 1675 ITCSHLKSTNSENVRHHEVRSRWSNAQGYYFQSIIFSLWSLRAAMRTFSGSFPEELITPL 1734
++ E+RS+ + YY Q ++ SL +RAA+RT S ++ ++ L
Sbjct: 1651 LS-----------FHGGEIRSKCLDTWWYYLQGLLLSLQGVRAALRTTHDSLNDDRVSKL 1699
Query: 1735 F-LLDLYEYYVHFASAWLQRDSKGLLQVLQPVLITYTNGHTPYEVDMNNLKTFFHQSAEL 1793
+LDL EY ++F SAWL RDS+ LL+++Q +L N +P++V++ LK Q EL
Sbjct: 1700 LTILDLVEYNLYFTSAWLLRDSRCLLKMVQLLL---ANEQSPHDVEIERLKQLLSQFGEL 1756
Query: 1794 LTRNTSIDNMVGDLQVSKFVDDERSTDLMNSIPEDERWQIMGACLWQHMSRFMKHKLNSM 1853
+ +N S D + + ++ + + +E D+++SIP DERW I+GACLW HMS+F+KHKL ++
Sbjct: 1757 IAQNLSSD-VDHNHEILEGMANEEYDDIVHSIPGDERWHIIGACLWHHMSKFIKHKLTTL 1815
Query: 1854 SVKLDENHSSRLLGGHISSWTSSLTNPESASIG-LKEQMRLLTLFLAQLLKSALLHISSH 1912
+ K E S + G+++SW L+ +S LK + L++ LL L SS+
Sbjct: 1816 TNKSKEGSFSGITLGNLNSWVPCLSTVKSDQNDILKNMIELISKNFTSLLTIVLAQASSY 1875
Query: 1913 HVKQLAFFLRYKVENGFDIPTRRWLQEATPSQSGTLYQHLNQIVVSMNIINNKDEAAISE 1972
+KQL FL+YK++ + T W ++ S+S +H + ++++ N + E
Sbjct: 1876 QLKQLVSFLQYKLDQRLCVATVVWFEQF--SKSSEHKKHHADEMYNIDMCNKGE----FE 1929
Query: 1973 LLWDVCSDPSIIHEGFTQEKLNWRSYINCKLSKGWSHINEGVKLKHEIKKTCKNEDKLGS 2032
LW++ S+P+++ E F EK++ + KLSK W+ I G E TC E L +
Sbjct: 1930 TLWNITSNPNLVSECFAHEKVHLLHCFDRKLSKRWTDIYNGTTRPEE---TCSREGALIN 1986
Query: 2033 TLASGEVGSASKDLFRNSRTSPRSWHKDANMANEVIPFQAPKEICKRNGELFEALCVNSI 2092
+ AS +GS K L R+ RT S K+ ++V+PFQ PKEI +RNGEL EALC+NS+
Sbjct: 1987 SSASDTIGSPGK-LLRSGRTLVSS-EKELATLDDVMPFQKPKEIYRRNGELLEALCINSV 2044
Query: 2093 DQRQGAIASNRKGIVFFNLEDEIPLHDQLKYIWADADWP--QNGWAGSESTPVPTFVSPG 2150
D RQ A+ASN+KGI+FF+ ED + D+ YIW++++WP NGWAGSESTP PT V PG
Sbjct: 2045 DGRQAALASNKKGIIFFSWEDGMASRDEEDYIWSNSEWPLNLNGWAGSESTPAPTCVFPG 2104
Query: 2151 VGLGSNKGAHLGLGGATIGVGSLARPGRDLTGGLAFGIPGYAGIGASALGWETQDDFEDY 2210
VGLG+NKGAHLGLGGAT+GVGS ARPGRDLTGG AFGI GYAG+GAS LGWETQ+DFE++
Sbjct: 2105 VGLGTNKGAHLGLGGATVGVGSPARPGRDLTGGGAFGISGYAGMGASGLGWETQEDFEEF 2164
Query: 2211 VDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYA 2270
VDPPAT E+ STRAFSSHP RP FLVGS+NTH+YLWEFGKD+ATATYGVLPAANVPPPYA
Sbjct: 2165 VDPPATAEHTSTRAFSSHPSRPLFLVGSTNTHVYLWEFGKDRATATYGVLPAANVPPPYA 2224
Query: 2271 LASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSS 2330
LASIS++QFD GHRFA+AALDGTVC+WQLEVGGRSNV P ES LCF+ HA DV+Y+TSS
Sbjct: 2225 LASISSVQFDQCGHRFATAALDGTVCSWQLEVGGRSNVCPTESSLCFNGHASDVTYVTSS 2284
Query: 2331 GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVT 2390
GS+IA AG+SS+ +NVV+WDTLAPP +S+A+I CHEGGARSISVFDN++GSGSVSPLIVT
Sbjct: 2285 GSIIAVAGYSSSAVNVVIWDTLAPPKTSQAAIMCHEGGARSISVFDNEIGSGSVSPLIVT 2344
Query: 2391 GGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP 2450
GGKGGDVG+HDFRY+ TG+ KKH G I+ ++ + G + + NGMLWYIP
Sbjct: 2345 GGKGGDVGLHDFRYVVTGRNKKHSPK---GERISDASNTNMLGTVGEQ--NLNGMLWYIP 2399
Query: 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFG 2510
KAH GSVT+I+++PNTSLFLTGSKDGDVKLWDAK A+LV+HW KLH+RHTFLQPSSRGFG
Sbjct: 2400 KAHSGSVTKITSIPNTSLFLTGSKDGDVKLWDAKRAKLVHHWPKLHDRHTFLQPSSRGFG 2459
Query: 2511 GVVRAGVTDIQVVSRGFLSCGGDGSVKLIQLE 2542
VVRA VTDIQV++ GFL+CGGDG VKL+QL+
Sbjct: 2460 EVVRAAVTDIQVIASGFLTCGGDGLVKLVQLQ 2491
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255564651|ref|XP_002523320.1| nucleotide binding protein, putative [Ricinus communis] gi|223537408|gb|EEF39036.1| nucleotide binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2609 bits (6762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1367/2339 (58%), Positives = 1696/2339 (72%), Gaps = 88/2339 (3%)
Query: 1 MPEAESGCSLQNANPCVDPTEHLPLAFLRSEFIPTAPTRSTSTIDWLPDFAGYSWVAYGA 60
MPEA S S ++P +HLPL+ + SE IP APTRS STIDWLPDF+GY+W+AYGA
Sbjct: 1 MPEASSSIS------TINPIDHLPLSIIGSEIIPPAPTRSESTIDWLPDFSGYAWIAYGA 54
Query: 61 SSLLVISHFPSPLSQEEALIGPIFRQVFALS-DNSLPVTSISWSPETPSIGQLAAASENC 119
SSLLVISH PSP+S +E LIGPI RQVF LS D+S VTS+SWS TPSIG+LAAAS NC
Sbjct: 55 SSLLVISHLPSPMSSDEFLIGPILRQVFELSGDHSSAVTSVSWSSVTPSIGELAAASNNC 114
Query: 120 IFVFAHDSASSKGSFCWSQNAILVQGTKVEAIEWTGSGDGIVAGGMETVLWKKKN-TLWE 178
I+VF+HDS SSKGSFCWSQNA+LVQ TKVEAI+WTGSGDGI++GG++ VLW+++N + WE
Sbjct: 115 IYVFSHDSGSSKGSFCWSQNAVLVQSTKVEAIKWTGSGDGIISGGIDVVLWRRRNRSSWE 174
Query: 179 IAWKFKENYPQNLVSATWSIEGPSATA-ASMSQLDLLGPKEAGKCVFICCSDGKSEYIKL 237
IAWKFK + PQNLVSATWSIEGPSA A A S+L + K V +C + SEY K
Sbjct: 175 IAWKFKRDEPQNLVSATWSIEGPSAAANAYPSKLHAKRSSDESKSVLVCYGNSISEYEKC 234
Query: 238 ELCHPQPVSMVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGKTRKVAKDT 297
ELCHPQPVSMVQWRP T S D K S RH+LLTCCLDGT RLW E+D+GK +K+ KD
Sbjct: 235 ELCHPQPVSMVQWRPLTINQSRRDVKHSPRHMLLTCCLDGTARLWTEIDNGKVKKLGKDN 294
Query: 298 NDHKTIRRSFCVGAIIEINQALNGALGMDIVITWAKEIRCMFETGEGANHFISTGVYEHG 357
+DHKT R+SFCV A+IEINQ L+G+LG+D+V+ WA E ++ TGEG+N IST Y H
Sbjct: 295 SDHKT-RKSFCVAAVIEINQVLSGSLGIDMVLNWATEHAGVYRTGEGSN--ISTERYGHD 351
Query: 358 GTGKCEWLVGYGPGSLVTLWAIHCLDDISPLRFPRVTLWKKQNLE-LEHPH--NSGFSGF 414
GKC+WL+G+GPG+++T W IHCLDDISP+RFPRVTLWK+Q L+ LE H +GFS F
Sbjct: 352 WVGKCDWLIGFGPGTVITFWVIHCLDDISPVRFPRVTLWKRQELQDLEGGHLGGAGFSKF 411
Query: 415 QGQSLLNKVVISRDCVSGLPTICSLVHLSHCNSLVWSLLHAQRSGDVEDVSSDKSSTGQI 474
+ LLNKV+ISR+C+S P CSLVHL HCNSLVWSLLH Q+SGD+ED SSDK T
Sbjct: 412 KDSILLNKVLISRNCLSSPPDECSLVHLLHCNSLVWSLLHIQKSGDMEDRSSDKYLT--- 468
Query: 475 LSCSASRILSIEGHTGKILQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDLPTL 534
S++ +S GHT KILQVA+HP + E LA SLDS+GLL+FWS+S ++ L TL
Sbjct: 469 ---SSANGVSCGGHTRKILQVALHPYIYELALAASLDSDGLLIFWSVSILNKL--GLSTL 523
Query: 535 MPSWKLCGKLRTRKSCSNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVC 594
+ +WK CGK T S YTSL+WAPS+LDED VL MGHVGGIDCFIVKISQ + D++C
Sbjct: 524 ISTWKFCGKFVTCDSFCKYTSLKWAPSMLDEDHVLFMGHVGGIDCFIVKISQ-KGGDVIC 582
Query: 595 HYVCTIPFTGHGHYEDGPANIFSVPLPSCNDKTVMYNKFMLLGVWLKGLESLSWEITFHS 654
H+ CTIP TGH YEDGP +IF +PLPS +KT YNKFMLLG+W+ ++LSWE+T H
Sbjct: 583 HHACTIPLTGHNAYEDGPRDIFVIPLPSTCNKTFKYNKFMLLGIWMNAFQALSWEVTLHC 642
Query: 655 FDLSESCCGC-IDDNNTVKCSMCKFETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVV 713
FDL S C C D N+ + KFE TF K+Y + VNPCSSQ PEP++ + +TSF+V+
Sbjct: 643 FDLQRSSCKCNFDYQNSSESCAWKFENTFANKRYCLSVNPCSSQLPEPYSYDQITSFSVI 702
Query: 714 CPNNLVPMQQKLVYDNDPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLV 773
P L PMQ+ L D D P Y MATG DG+LR+WRS T + WELVG V
Sbjct: 703 GPGYLSPMQEGLGLDKDTSCNFPAYIMATGCFDGTLRMWRSNSSKLPTPAILWELVGNFV 762
Query: 774 AHQGPVSAISLTDGGRKIATVSAASHSNAVSNVRIWESVCVTELGSFVLEDTLSFDTNIV 833
AH+GPV+AI LTD GRKIAT+SA S+ + S + IW+SV + GSFVLE LS D ++V
Sbjct: 763 AHEGPVTAIRLTDCGRKIATLSAGSNMDGSSILHIWDSVHLIGAGSFVLEAILSIDGDVV 822
Query: 834 AVNWLTLENGQSLLGVCLQNELKVYAQRHYGGQILLDTKNSLKMQNWFCLAFSPTFAA-H 892
A+NWLTL NGQ LGVC+QNEL+VYAQ+ GQ L++ SL +NWFC+A + T A
Sbjct: 823 ALNWLTLGNGQFCLGVCMQNELRVYAQQRSVGQTLVNLGKSLNGENWFCIAVAHTLPAIR 882
Query: 893 DFTWGRRAIAIVVHQSYLSIYSQFLFLIDKKHQAKCNSN-VFIDNFCCHKSGINENIVST 951
D WG +A A+++H SY S+ SQ+LF +D KH KC++N V +D C + G +I+S+
Sbjct: 883 DLLWGSQAAAVIIHDSYYSVLSQWLFFVDNKHPVKCHANSVVVD---C-EGGKGTDILSS 938
Query: 952 IFTVCDSESSAGDQRGDYESAPSVNIDMKNDHLVASDQLKCGG-AILGSWSMLEIAEKLR 1010
IFT CD +S ++ A N + + V QL+ G G WS++EIAEKLR
Sbjct: 939 IFTDCDIANSQLREKSFLMKANKNNEYLSSSLSVVMAQLRQGSDKRFGFWSLVEIAEKLR 998
Query: 1011 GSLPVYHPKALFLNIYSGNWKRAYVSVRHLVENLPSNYPSEKRYCYTKSSHIVPQILLST 1070
G LPVYHP+AL +NIYSGNWK AY +VRHL E L S Y SE+R K+S I PQI LS+
Sbjct: 999 GMLPVYHPEALLMNIYSGNWKCAYAAVRHLAEYLTSGYASERRCSSGKNSFIAPQIHLSS 1058
Query: 1071 YFEGLLSKGSTDNGFQW-SGLNTFSTSLQFRQFAYNMDLDASNS---SSSTKSELSGFVE 1126
YFEGLLS+ ST F+W + +N ++S QF F + + DASN+ SS+T SEL GFVE
Sbjct: 1059 YFEGLLSRDSTVKEFKWRADVNLPASSSQF--FVHGTNFDASNNIFPSSTTASELHGFVE 1116
Query: 1127 LLQNVYELAGVTDAEKMEILAVVDLLNEFDNKHSASVYENLDEPGQRFWVELRFQLLCFF 1186
++ +Y+LA +T+ EK++ILA++DLL E + SAS YENLDEPG+RFWV LRFQ L F
Sbjct: 1117 PVEKMYDLAALTNVEKLQILAIIDLLTEI--QQSASAYENLDEPGRRFWVALRFQQLYFC 1174
Query: 1187 RRFGKLVSAEELAVDSRLIAWAFHSECQETLFGSILPNEPTWPEMRALGVGFWYTDVTQL 1246
RR G+ S EEL VD+RL++WAFHS+CQETL GS LPNEP+W EM+ALGVGFW+T+ QL
Sbjct: 1175 RRSGRSSSVEELVVDTRLMSWAFHSDCQETLLGSFLPNEPSWKEMQALGVGFWFTNNAQL 1234
Query: 1247 RTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQEE 1306
RTRMEKLAR+QYL+ +DPKDCALLY+ALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQEE
Sbjct: 1235 RTRMEKLARMQYLRNRDPKDCALLYVALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQEE 1294
Query: 1307 KNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHG 1366
KNKAAALKNAYVL+GRHQL LAIAFFLLGGD SA+TVCA+NLGD QLALVICRL+E G
Sbjct: 1295 KNKAAALKNAYVLMGRHQLGLAIAFFLLGGDNYSAITVCAKNLGDEQLALVICRLIEGRG 1354
Query: 1367 GPLERNLVTKFILPSSIERGDYWLTSLLEWELGNYSQSFLTMLGFQSTAVINNFALSSNS 1426
GPLE +L+TKF LPS+ ERGDYWL SLL+WELGNY +SFLTML F V+ ALSSN+
Sbjct: 1355 GPLEHHLITKFALPSATERGDYWLASLLKWELGNYFESFLTMLDFPKNCVLGKSALSSNN 1414
Query: 1427 VAFMDPSIGLYCLMLANKNSMRNAIGEKNAAILGRWAALMRATALNRCGLPLEALDCLSS 1486
AFMDP IGL+CL+LANK MRNAIGE+NAAILGRWA M ATA NR GLPLEAL+CLSS
Sbjct: 1415 AAFMDPHIGLHCLILANKYCMRNAIGERNAAILGRWATYMAATAFNRSGLPLEALECLSS 1474
Query: 1487 SPSTIGGTDQESVLNIGHSHILPEILKPSAATGSSNWLLRDVALHLESCAKLDLSLQYFS 1546
S S G DQ S+ ++ S IL ILKPS A+ S NWL R+VALHLESCAKLDL+LQYFS
Sbjct: 1475 SSSNSGNIDQGSISDVDGSQILHVILKPS-ASDSVNWLSRNVALHLESCAKLDLALQYFS 1533
Query: 1547 KLIRDHPSWPD--LGFGRASKCFMDFEIHQYEKLVQNFQQKLYTALAFFEQRFSMDSSSL 1604
KL+ +HPSWPD +G + S D E+HQ++KL++NFQ+KLYT ++ FEQ+F + SS L
Sbjct: 1534 KLMGEHPSWPDTIIGSVQLSSHVKDCEVHQFKKLLENFQEKLYTGISKFEQKFLVVSSCL 1593
Query: 1605 IAKILSLLCNNGLLFIGYDLLHGYICQGKSQEKSSDTVDGLSLYFCQHKPLLKAAEDISI 1664
I IL L NNG LF GYD+L GY Q Q++S +V LY HK LL++ +DIS+
Sbjct: 1594 IKMILVWLHNNGSLFTGYDILFGYTSQYHLQDESR-SVGNSVLYPLLHKTLLESVQDISL 1652
Query: 1665 FLSRFIAATSITCSHLKSTNSENVRHHEVRSRWSNAQGYYFQSIIFSLWSLRAAMRTFSG 1724
LSRFI + SI S N+E V E RS WS+ QG+YFQ I+ LWSLR A+R+ SG
Sbjct: 1653 LLSRFIVSCSIN-SLQPFENNETV---ETRS-WSDTQGHYFQGIMSMLWSLRTAVRSVSG 1707
Query: 1725 SFPEELIT-PLFLLDLYEYYVHFASAWLQRDSKGLLQVLQPVLITYTNGHTPYEVDMNNL 1783
E++ L LLDL+E+YVHFASAWLQR+SKGLL ++QP+LIT TNGHTPYEVD+ NL
Sbjct: 1708 LSSEDVTARSLVLLDLFEFYVHFASAWLQRNSKGLLLMVQPLLITCTNGHTPYEVDITNL 1767
Query: 1784 KTFFHQSAELLTRNTSI-DNMVGDLQVSKFVDDERSTDLMNSIPEDERWQIMGACLWQHM 1842
K + AELL N S+ D VG + V+ + + + M+S EDE+W ++G CLWQH+
Sbjct: 1768 KNILYHIAELLGSNLSVNDTGVGHI-VANCMPSTQDRETMHSFSEDEKWHVIGTCLWQHL 1826
Query: 1843 SRFMKHKLNSMSVKLDENHSSRLLGGHISSWTSSLTNPESASIGLKEQMRLLTLFLAQLL 1902
SR +KHKL+ +S+ ++++ S + G ISSW S + +K+++ +L LA+LL
Sbjct: 1827 SRLLKHKLHLLSINIEDDCFSGVSHGLISSWPSGSIGSDDT---MKKEIMSFSLILAKLL 1883
Query: 1903 KSALLHISSHHVKQLAFFLRYKVENGFDIPTRRWLQEATPSQSGTLYQHLNQIVVSMNII 1962
K +LH+SS+HVK L+ KVEN + T WL+++ SQ+ LYQ S +I+
Sbjct: 1884 KITILHVSSYHVKIFGSLLQLKVENELHMTTLTWLKDSIASQAKVLYQD-----ASADIM 1938
Query: 1963 NNKDEAAISELLWDVCSDPSIIHEGFTQEKLNWRSYINCKLSKGWSHINEGVKLKHEIKK 2022
N+KDE + ++LWD C+DP+I+ EGF EK+NW + N + S+ WS + ++ ++E ++
Sbjct: 1939 NSKDELSTFDILWDTCADPNIVSEGFALEKINWSEFFNRRSSQSWSKFYKIIRGEYETRE 1998
Query: 2023 TCKNEDKLGSTLASGEVGSASKDLFRNSRTSPRSWHKDANMANEVIPFQAPKEICKRNGE 2082
+E +L + +S EV S K LF+N R +W KDA ++ E FQ KEI KR+GE
Sbjct: 1999 GLDHEVRLSTNRSSDEVESPGKGLFKNGRAVLTTWQKDATISKEETLFQNAKEIYKRDGE 2058
Query: 2083 LFEALCVNSIDQRQGAIASNRKGIVFFNLEDEIPLHDQLKYIWADADWPQNGWAGSESTP 2142
L EALCVNS+++ Q AIASNRKGI+FF+ +D + D+ +YIWADADWP NGWAG+ESTP
Sbjct: 2059 LLEALCVNSVNEGQAAIASNRKGIIFFSWKDGVTFVDKSEYIWADADWPPNGWAGAESTP 2118
Query: 2143 VPTFVSPGVGLGSNKGAHLGLGGATIGVGSLARPGRDLTGGLAFGIPGYAGIGASALGWE 2202
VPT VSPGVGLGS KG+HL GYAGIGAS LGWE
Sbjct: 2119 VPTSVSPGVGLGSKKGSHL----------------------------GYAGIGASGLGWE 2150
Query: 2203 TQDDFEDYVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPA 2262
Q+DFE+++DPPATVE ISTRAFSSHP R FFLVGSSNTHIYLWEFG +KATATYGVLPA
Sbjct: 2151 VQEDFEEFLDPPATVETISTRAFSSHPSRSFFLVGSSNTHIYLWEFGNNKATATYGVLPA 2210
Query: 2263 ANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHA 2321
ANVPPPYALAS+SALQFD GHRFASAALDGTVCTWQLEVGGRSN+ P ES LCF+ +A
Sbjct: 2211 ANVPPPYALASVSALQFDPCGHRFASAALDGTVCTWQLEVGGRSNIHPTESSLCFNGYA 2269
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449478209|ref|XP_004155251.1| PREDICTED: uncharacterized LOC101204824 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2514 bits (6515), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1338/2557 (52%), Positives = 1725/2557 (67%), Gaps = 176/2557 (6%)
Query: 17 VDPTEHLPLAFLRSEFIPTAPTRST---STIDWLPDFAGYSWVAYGASSLLVISHFPSPL 73
+DP LPL L SE IP+AP R S+IDW+PDFAGY+WVAYGASSLLVISHFPSPL
Sbjct: 8 MDPISRLPLPLLGSEPIPSAPNRLDPLGSSIDWIPDFAGYAWVAYGASSLLVISHFPSPL 67
Query: 74 SQEEALIGPIFRQVFALSDNSL-PVTSISWSPETPSIGQLAAASENCIFVFAHDSASSKG 132
S E GPIFRQV LS + L V ++SWSP PS G+LAAA+ N I+VF+HD +S+G
Sbjct: 68 SPHETKFGPIFRQVLELSGDHLSAVNAVSWSPVLPSEGELAAAAGNRIWVFSHDLGASRG 127
Query: 133 SFCWSQNAILVQGTKVEAIEWTGSGDGIVAGGMETVLWKKKNTLWEIAWKFKENYPQNLV 192
SFCW QN++LVQ KVEAI+WTGSGDGI+A G+E VLWK N WEIAWKFK + PQ LV
Sbjct: 128 SFCWRQNSVLVQSLKVEAIQWTGSGDGIIACGVEVVLWKNTNKSWEIAWKFKPDVPQTLV 187
Query: 193 SATWSIEGPSATA--ASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQW 250
SA+WS EGP ATA A +S+ + + + A + V +
Sbjct: 188 SASWSTEGPFATAPHARISKTENMLTERACRSVLVING---------------------- 225
Query: 251 RPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGKTRKVAKDTNDHKTIRRSFCVG 310
P +HSP R+VLLTCCLDGTVRLW E ++GK RK +KD N+ K++RR F V
Sbjct: 226 -PEIGKHSP-------RNVLLTCCLDGTVRLWSETENGKVRKFSKDVNNKKSMRRHFSVA 277
Query: 311 AIIEINQALNGALGMDIVITWAKEIRCMFETGEGANHFISTGVYEHGGTGKCEWLVGYGP 370
A++EINQAL G LGMD+ +TWA EIR M + E S+ +E G CEWL+ GP
Sbjct: 278 AVVEINQALKGTLGMDLFVTWATEIRGMCQPFEVTKKVQSSVGFEQNKAGNCEWLISLGP 337
Query: 371 GSLVTLWAIHCLDDISPLRFPRVTLWKKQNL---ELEHPHNSGFSGFQGQSLLNKVVISR 427
GSLVT WA+HCLDD+SPLRFP+VTLWKKQ L E+ + G + + LL KVVISR
Sbjct: 338 GSLVTFWAVHCLDDVSPLRFPQVTLWKKQELKGFEVGRHYTDGCTNLSNKFLLKKVVISR 397
Query: 428 DCVSGLPTICSLVHLSHCNSLVWSLLHAQRSGDVEDVSSDKSSTGQILSCSASRILSIEG 487
SG P+ICSL+ L CNSLVWSLL A DV D S D+ + SCS S L++ G
Sbjct: 398 IHQSGSPSICSLIQLLPCNSLVWSLLSAHTLTDVGDASFDQKRLESLSSCSFSSQLNLSG 457
Query: 488 HTGKILQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDLPTLMPSWKLCGKLRTR 547
H GKIL VAVHP E ++A SLDSNGLLLFWSLS+ISNC PTL P+W+LCGKL T+
Sbjct: 458 HAGKILHVAVHPYNCEVKIAASLDSNGLLLFWSLSSISNCALGSPTLTPTWELCGKLVTQ 517
Query: 548 KSCSNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVCHYVCTIPFTGHGH 607
SCS YTS++WAPS+LDE+++LLMGH GID F V+ISQ++ ++ CHY+CTIPFTGHG
Sbjct: 518 DSCSKYTSVQWAPSILDEELILLMGHARGIDFFAVRISQSDEENTECHYLCTIPFTGHGP 577
Query: 608 YEDGPANIFSVPLPSCNDKTVMYNKFMLLGVWLKGLESLSWEITFHSFDLSESCCGC--- 664
+E+GP NIFS+ LPS + T +NKFMLLG+W+KG ++LSWEIT H++D+S + C
Sbjct: 578 FENGPTNIFSILLPSDCNITYKFNKFMLLGIWMKGFQALSWEITLHAYDISGTGLHCKCD 637
Query: 665 IDDNNTVKCSMCKFETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVVCPNNLVPMQQK 724
ID+ N + S+ FE+ F KKY + + PCSSQ P + +TSFAVV VP+QQK
Sbjct: 638 IDNENRAELSILTFESAFGSKKYCVSIIPCSSQLPNSQIHDQITSFAVVHQGTFVPVQQK 697
Query: 725 LVYDNDPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAISL 784
L +P + P Y MATG +DG L+LW+S +G S +PWELV ++VAHQGP++A+SL
Sbjct: 698 LASSGEPST--PAYIMATGSADGCLKLWKSNVGKPSIFHVPWELVCVVVAHQGPITALSL 755
Query: 785 TDGGRKIATVSAASHSNAVSNVRIWESVCVTELGSFVLEDTLSFDTNIVAVNWLTLENGQ 844
TD GRKIAT+S + S+V +WE + G + ED LSF++NI+AV+WLTL NGQ
Sbjct: 756 TDCGRKIATISKDNLECKTSSVHLWE-LAYLGAGILLFEDELSFESNIIAVDWLTLGNGQ 814
Query: 845 SLLGVCLQNELKVYAQRHYGGQILLDTKNSLKMQNWFCLAFSPTFAAH-DFTWGRRAIAI 903
LLG+CLQNEL VY+ + +G LL+T SL + W C+ S T ++ F WG R AI
Sbjct: 815 FLLGICLQNELCVYSLKRFGCHTLLETTKSLDTKTWICIGISRTLPSNCGFLWGPRTTAI 874
Query: 904 VVHQSYLSIYSQFLFLIDKKHQAKCNSNVFIDNFCCHKSGINENIVSTIFTVCDSESSAG 963
V+H Y I S +LFL H A CN++ + H +G N NI +F
Sbjct: 875 VLHDRYFCIVSPWLFLGVTNHDAMCNTHYIGETKTHHVNGTNTNISVAVF---------A 925
Query: 964 DQRGDYESAPSVNIDMKNDHLVASDQLKCGGAILGSWSMLEIAEKLRGSLPVYHPKALFL 1023
D+ ++ P D + + K LG SM ++ +KL GSL +HP+AL
Sbjct: 926 DKCCGIKTLP--------DDIY---ERKYRPGSLGLISMPDVVDKLCGSLSSFHPQALLF 974
Query: 1024 NIYSGNWKRAYVSVRHLVENLPSNYPSEKRYCYTKSSHIVPQILLSTYFEGLLSKGSTDN 1083
NIYSG WKRAY ++ HL+E+L S+ S YT +P+I LS YFEG++ K STD
Sbjct: 975 NIYSGKWKRAYSALSHLIEHLSSDKKSSANSTYT-----IPEIPLSDYFEGVI-KTSTDK 1028
Query: 1084 GFQWSGLNTFSTSLQFR----QFAYNMDLDASNSS---SSTKSELSGFVELLQNVYELAG 1136
G QWS T S S QF+ Q+A+N D ++++S SSTKSE S F+E L+ +YELAG
Sbjct: 1029 GVQWS---TNSLSSQFKEGVSQWAFNWDSISNDNSFVPSSTKSEFSSFIEPLEKLYELAG 1085
Query: 1137 VTDAEKMEILAVVDLLNEFDNKHSASVYENLDEPGQRFWVELRFQLLCFFRRFGKLVSAE 1196
+T EK + LA+VDLL E NK S+S YE+LDEPG+R+W+ RFQ L F RR + S E
Sbjct: 1086 LTSMEKTQTLAIVDLLGEISNKSSSSAYESLDEPGRRYWIAWRFQQLQFLRRESRSASME 1145
Query: 1197 ELAVDSRLIAWAFHSECQETLFGSILPNEPTWPEMRALGVGFWYTDVTQLRTRMEKLARL 1256
ELA+DS+LI WA+HS+CQE L S+ NEPTW EMR+LGVG W+T+ TQLRTRMEKLAR
Sbjct: 1146 ELAIDSKLIGWAYHSDCQEILLNSVSSNEPTWQEMRSLGVGIWFTNTTQLRTRMEKLARS 1205
Query: 1257 QYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQ-----EEKNKAA 1311
QYLKKKDPKDC LLY+ LNRIQVLAGLFKIS+DEKDKPLVGFLSRNFQ KNKAA
Sbjct: 1206 QYLKKKDPKDCMLLYVTLNRIQVLAGLFKISRDEKDKPLVGFLSRNFQIFGENRGKNKAA 1265
Query: 1312 ALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHGGPLER 1371
ALKNAYVLLGRHQLELA+AFFLLGGD+ SAV+VCA+NLGD QLALVIC LVE GGPL++
Sbjct: 1266 ALKNAYVLLGRHQLELAVAFFLLGGDSYSAVSVCAKNLGDEQLALVICHLVEGRGGPLQQ 1325
Query: 1372 NLVTKFILPSSIERGDYWLTSLLEWELGNYSQSFLTMLGFQSTAVINNFALSSNSVAFMD 1431
+L+TKF+LPS+IE+GD WL S+LEWELGNY++SFL ML S ++ LSS +A +D
Sbjct: 1326 HLITKFMLPSAIEKGDTWLASILEWELGNYTRSFLNMLRLDSNSITGPPFLSSKHIALLD 1385
Query: 1432 PSIGLYCLMLANKNSMRNAIGEKNAAILGRWAALMRATALNRCGLPLEALDCLSSSPSTI 1491
PS+G+YCL+LA KNSM+ A+G ++A IL + A LM AT+LNR GLPLEAL+ +S+ S
Sbjct: 1386 PSVGMYCLLLATKNSMKKAVGVQSAEILCQLATLMMATSLNRRGLPLEALEHVSTCGSIT 1445
Query: 1492 GGTDQESVLNIGHSHILPEILKPSAATGSSNWLLRDVALHLESCAKLDLSLQYFSKLIRD 1551
+D + ++I + I + S SS+WL + A+HLE KLDL+ QYFSKLIR
Sbjct: 1446 DVSDGTNKVDIQCFDTISNICQKSPGD-SSSWLSVEFAVHLEHQVKLDLAAQYFSKLIRK 1504
Query: 1552 HPSWPDLGFGRAS--KCFMDFEIHQYEKLVQNFQQKLYTALAFFEQRFSMDSSSLIAKIL 1609
HPSWP + F C ++E+ YEK ++++Q KL A FE +FS+ +SL++ +L
Sbjct: 1505 HPSWPTINFESVGCMSCSKEYEM-DYEKSLESYQHKLSVGFAQFEMKFSLLPASLVSMML 1563
Query: 1610 SLLCNNGLLFIGYDLLHGYICQGKSQEKSSDTVDGLSLYFCQHKPLLKAAEDISIFLSRF 1669
++C Q +D V G
Sbjct: 1564 L-----------------FLCNLGLQFIGNDIVRGF------------------------ 1582
Query: 1670 IAATSITCSHLKSTNSENVRHHEVRSRWSNAQGYYFQSIIFSLWSLRAAMRTFSGSFPEE 1729
TS C K+ + + H + + +RAA+RT S ++
Sbjct: 1583 ---TSQECPDDKNLTTYSFLVHRLLHK-----------------GVRAALRTTHDSLNDD 1622
Query: 1730 LITPLF-LLDLYEYYVHFASAWLQRDSKGLLQVLQPVLITYTNGHTPYEVDMNNLKTFFH 1788
++ L +LDL EY ++F SAWL RDS+ LL+++Q +L N +P++V++ LK
Sbjct: 1623 RVSKLLTILDLVEYNLYFTSAWLLRDSRCLLKMVQLLL---ANEQSPHDVEIERLKQLLS 1679
Query: 1789 QSAELLTRNTSIDNMVGDLQVSKFVDDERSTDLMNSIPEDERWQIMGACLWQHMSRFMKH 1848
Q EL+ +N S D + + ++ + + +E D+++SIP DERW I+GACLW HMS+F+KH
Sbjct: 1680 QFGELIAQNLSSD-VDHNHEILEGMANEEYDDIVHSIPGDERWHIIGACLWHHMSKFIKH 1738
Query: 1849 KLNSMSVKLDENHSSRLLGGHISSWTSSLTNPESASIG-LKEQMRLLTLFLAQLLKSALL 1907
KL +++ K E S + G+++SW L+ +S LK + L++ LL L
Sbjct: 1739 KLTTLTNKSKEGSFSGITLGNLNSWVPCLSTVKSDQNDILKNMIELISKNFTSLLTIVLA 1798
Query: 1908 HISSHHVKQLAFFLRYKVENGFDIPTRRWLQEATPSQSGTLYQHLNQIVVSMNIINNKDE 1967
SS+ +KQL FL+YK++ + T W ++ S+S +H + ++++ N +
Sbjct: 1799 QASSYQLKQLVSFLQYKLDQRLCVATVVWFEQF--SKSSEHKKHHADEMYNIDMCNKGE- 1855
Query: 1968 AAISELLWDVCSDPSIIHEGFTQEKLNWRSYINCKLSKGWSHINEGVKLKHEIKKTCKNE 2027
E LW++ S+P+++ E F EK++ + KLSK W+ I G E TC E
Sbjct: 1856 ---FETLWNITSNPNLVSECFAHEKVHLLHCFDRKLSKRWTDIYNGTTRPEE---TCSRE 1909
Query: 2028 DKLGSTLASGEVGSASKDLFRNSRTSPRSWHKDANMANEVIPFQAPKEICKRNGELFEAL 2087
L ++ AS +GS K L R+ RT S K+ ++V+PFQ PKEI +RNGEL EAL
Sbjct: 1910 GALINSSASDTIGSPGK-LLRSGRTLVSS-EKELATLDDVMPFQKPKEIYRRNGELLEAL 1967
Query: 2088 CVNSIDQRQGAIASNRKGIVFFNLEDEIPLHDQLKYIWADADWPQN--GWAGSESTPVPT 2145
C+NS+D RQ A+ASN+KGI+FF+ ED + D+ YIW++++WP N GWAGSESTP PT
Sbjct: 1968 CINSVDGRQAALASNKKGIIFFSWEDGMASRDEEDYIWSNSEWPLNLNGWAGSESTPAPT 2027
Query: 2146 FVSPGVGLGSNKGAHLGLGGATIGVGSLARPGRDLTGGLAFGIPGYAGIGASALGWETQD 2205
V PGVGLG+NKGAHLGLGGAT+GVGS ARPGRDLTGG AFGI GYAG+GAS LGWETQ+
Sbjct: 2028 CVFPGVGLGTNKGAHLGLGGATVGVGSPARPGRDLTGGGAFGISGYAGMGASGLGWETQE 2087
Query: 2206 DFEDYVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANV 2265
DFE++VDPPAT E+ STRAFSSHP RP FLVGS+NTH+YLWEFGKD+ATATYGVLPAANV
Sbjct: 2088 DFEEFVDPPATAEHTSTRAFSSHPSRPLFLVGSTNTHVYLWEFGKDRATATYGVLPAANV 2147
Query: 2266 PPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS 2325
PPPYALASIS++QFD GHRFA+AALDGTVC+WQLEVGGRSNV P ES LCF+ HA DV+
Sbjct: 2148 PPPYALASISSVQFDQCGHRFATAALDGTVCSWQLEVGGRSNVCPTESSLCFNGHASDVT 2207
Query: 2326 YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVS 2385
Y+TSSGS+IA AG+SS+ +NVV+WDTLAPP +S+A+I CHEGGARSISVFDN++GSGSVS
Sbjct: 2208 YVTSSGSIIAVAGYSSSAVNVVIWDTLAPPKTSQAAIMCHEGGARSISVFDNEIGSGSVS 2267
Query: 2386 PLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGM 2445
PLIVTGGKGGDVG+HDFRY+ TG+ KKH G I+ ++ + G + + NGM
Sbjct: 2268 PLIVTGGKGGDVGLHDFRYVVTGRNKKHSPK---GERISDASNTNMLGTVGEQ--NLNGM 2322
Query: 2446 LWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPS 2505
LWYIPKAH GSVT+I+++PNTSLFLTGSKDGDVKLWDAK A+LV+HW+KLH+RHTFLQPS
Sbjct: 2323 LWYIPKAHSGSVTKITSIPNTSLFLTGSKDGDVKLWDAKRAKLVHHWAKLHDRHTFLQPS 2382
Query: 2506 SRGFGGVVRAGVTDIQVVSRGFLSCGGDGSVKLIQLE 2542
SRGFG VVRA VTDIQV++ GFL+CGGDG VKL+QL+
Sbjct: 2383 SRGFGEVVRAAVTDIQVIASGFLTCGGDGLVKLVQLQ 2419
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334184951|ref|NP_182179.3| transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] gi|330255627|gb|AEC10721.1| transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2367 bits (6133), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1296/2595 (49%), Positives = 1663/2595 (64%), Gaps = 155/2595 (5%)
Query: 6 SGCSLQNANPCVDPTEHLPLAFLRSEFIPTAPTRSTSTIDWLPDFAGYSWVAYGASSLLV 65
SG + +P D +HLPL LRSE +P APTRS S+IDWLPDFA YSW+AYGAS+L+V
Sbjct: 10 SGLERGSGDPRTDRIDHLPLRQLRSEIVPPAPTRSQSSIDWLPDFANYSWLAYGASTLVV 69
Query: 66 ISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLAAASENCIFVFAH 125
ISH PSPL E++ GP FRQ+ +S PVT++ WSP TPS+G+LA S N IF+FA
Sbjct: 70 ISHLPSPLRGEDSTNGPFFRQILEVSGE--PVTAVCWSPVTPSVGELAVGSGNYIFLFAR 127
Query: 126 DSASSKGSFCWSQNAILVQGTKVEAIEWTGSGDGIVAGGMETVLWKKKNTLWEIAWKFKE 185
D KGSFCWSQNAILVQ T VEAIEWTGSGDGI+ GG + VLWK++N WEIAWKF
Sbjct: 128 DL---KGSFCWSQNAILVQETIVEAIEWTGSGDGIIVGGTDIVLWKRRNQSWEIAWKFSG 184
Query: 186 NYPQNLVSATWSIEGPSATAASMSQLDLLGPKE---AGKCVFICCSDGKSEYIKLELCHP 242
++ Q+LVS+TWS EGP ATA S + P E AGK V SDG+S Y EL HP
Sbjct: 185 DHLQDLVSSTWSFEGPFATATSWRKF----PAECDDAGKSVLAYYSDGES-YHNFELPHP 239
Query: 243 QPVSMVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGKTRKVAKDTNDHKT 302
Q +SM+QWRP S +S R+VL+TCCLDG VRLWCE+D GKT+K KD DHK
Sbjct: 240 QRISMIQWRPMAAEQSAIGIGKSMRNVLMTCCLDGAVRLWCEVDGGKTKKGMKDVPDHK- 298
Query: 303 IRRSFCVGAIIEINQALNGALGMDIVITWAKEIRCMFETGEGANHFISTGVYEHGGTGKC 362
+SFCV A+IEINQ L+G LG D+ + W +F+T EG N S Y++ GKC
Sbjct: 299 --KSFCVAAVIEINQVLDGCLGRDLFLFWGTRTGGIFKTIEGTNQVFSMEKYDNENVGKC 356
Query: 363 EWLVGYGPGSLVTLWAIHCLDDISPLRFPRVTLWKKQNLELEHPHNSGFSGFQGQS---L 419
EWLVGYGPG+ TLWA+HCLDDISP+RFPRVTLW KQ + + G S
Sbjct: 357 EWLVGYGPGNFATLWAVHCLDDISPMRFPRVTLWAKQESNEIGAGSLSLASATGSSDRLP 416
Query: 420 LNKVVISRDCVSGLPTICSLVHLSHCNSLVWSLLHAQRSGDVEDVSSDKSSTGQILSCSA 479
L KV + R+ + G P ICS ++LS N++ WS LH +S D ED S +KSS +L C
Sbjct: 417 LKKVSVLRNNLYGTPLICSSIYLSPQNTVYWSSLHTIKSHDSEDSSPNKSS---LLKCID 473
Query: 480 SRILSIEGHTGKILQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDLPTLMPSWK 539
++L ++GH GKILQVA P V E SLDSNGL++ S S N + P + SWK
Sbjct: 474 GKVLYLDGHGGKILQVASDPFVCEAGYTASLDSNGLIIICSSSVYLNRTIEHPISVASWK 533
Query: 540 LCGKLRTRKSCSNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVCHYVCT 599
CG+L+ ++ YTSL WAPS L ++ LL+GHVGG+DCF V+ D + HY+CT
Sbjct: 534 PCGRLQNQEFRLKYTSLCWAPSSLKDERFLLVGHVGGVDCFSVRNCGKGDDGYLTHYICT 593
Query: 600 IPFTGHGHYEDGPANIFSVPLPSCNDKTVMYNKFMLLGVWLKG--LESLSWEITFHSFDL 657
IPFT + + GP +IF+ PL + KT N+F+LL VW+K ++LSW +T H FD
Sbjct: 594 IPFTVNSPLQSGPTSIFAKPLSNSCGKTFKSNRFLLLSVWMKEKRFDALSWSVTLHHFDT 653
Query: 658 SESCCGC-IDDNNTVKCSMCKFETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVVCPN 716
+ S C C D +++ FE TF GK + + CSS+ PE H + VTSFAVV P+
Sbjct: 654 AGSTCDCHFHDFDSIGLGKWLFEDTFAGKTNCLAIRSCSSEIPESHREDEVTSFAVVNPS 713
Query: 717 NLVPMQQKLVYDNDPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQ 776
+N S+ YT+ATG +DGSL+LWRS SST WELVGML Q
Sbjct: 714 GRD-------LENGVNSESQAYTIATGQADGSLKLWRSSFQESSTPSGLWELVGMLTVGQ 766
Query: 777 GPVSAISLTDGGRKIATVSAASHSNAVSNVRIWESVCVTELGSFVLEDTLSFDTNIVAVN 836
PVSAISLTD G KIA + SHS A V IWE V + + G F+LED + D +VAV
Sbjct: 767 NPVSAISLTDSGHKIAALCTESHSKAARAVSIWEIVHLIDSGVFILEDKVHVDAEVVAVR 826
Query: 837 WLTLENGQSLLGVCLQNELKVY--AQRHYGGQILLDTKNSLKMQNWFCLAFSPTFAA-HD 893
W T N Q LLGVC Q E++VY A++ S + Q W C A + TF+A HD
Sbjct: 827 WSTTGNDQLLLGVCTQIEMRVYGIARQPCKSTSFAAYDYSSEAQIWQCFAVTRTFSAIHD 886
Query: 894 FTWGRRAIAIVVHQSYLSIYSQFLFLIDKKHQAKCNSNVFIDNFCCHKSGINENIVSTIF 953
WG +A+ +VH Y+S++ Q+L ++DKK + +F N N+V+
Sbjct: 887 LWWGPKAMTCLVHNDYISLHGQWLAVVDKKQKIDNYPEIFASNL--------PNLVNATE 938
Query: 954 TVCDSESSAGDQRGDYESA------------PSVNIDMKNDHLVASDQLKCGGAILGS-- 999
DSE + D A PS + + + + + + G GS
Sbjct: 939 EGRDSEFLSDSGTNDINEADTTSTSRGCIPLPSTSNAIDDGQV---NSMSLIGTAYGSNT 995
Query: 1000 ----WSMLEIAEKLRGSLPVYHPKALFLNIYSGNWKRAYVSVRHLVENLPSNYPSEKRYC 1055
SM + EKL G+LP+YHP AL + I SGNWKRA ++RHL E + S+ SEK Y
Sbjct: 996 IDDIMSMGHMVEKLGGALPLYHPHALLVAIRSGNWKRASAALRHLAEYITSSDTSEKGYA 1055
Query: 1056 YTKSSHIVPQILLSTYFEGLLSKGSTDNGFQWSGLNTFSTSLQFRQF------AYNMDLD 1109
S + P ILLS Y+EG LS G FQW G T + LQ+ QF +NM+
Sbjct: 1056 V--KSVLCPDILLSKYYEGSLSNGPNPKDFQWGG--TSGSMLQYSQFQSGLQSKFNMESY 1111
Query: 1110 ASNSSSSTKSELSGFVELLQNVYELAGVTDAEKMEILAVVDLLNEFDNKHSASVYENLDE 1169
+ NS + T E SGF E L+ + + ++ E ++ A+VDLL E N HS SVY +LDE
Sbjct: 1112 SPNSPA-TDLEFSGFCEQLKKLSDEGNISRIEILQYFAIVDLLCEISNPHSTSVYASLDE 1170
Query: 1170 PGQRFWVELRFQLLCFFRRFGKLVSAEELAVDSRLIAWAFHSECQETLFGSILPNEPTWP 1229
PG+RFWV LRF+ L R GK S EEL +DS +I WAFHSE QE L GS+LPNE +W
Sbjct: 1171 PGRRFWVTLRFKQLFLARSSGKTASLEELDIDSSMIGWAFHSESQENLSGSLLPNESSWQ 1230
Query: 1230 EMRALGVGFWYTDVTQLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKD 1289
+MR+ G GFWY++ QLR+RMEKLAR QYLK K+PKDCALLYIALNR+QVLAGLFK+SKD
Sbjct: 1231 QMRSQGFGFWYSNAAQLRSRMEKLARQQYLKNKNPKDCALLYIALNRVQVLAGLFKLSKD 1290
Query: 1290 EKDKPLVGFLSRNFQEEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNL 1349
EKDKPLV FLSRNFQEEKNKAAALKNAYVL+G+HQLELAI FFLLGG+A+SA+ VC +NL
Sbjct: 1291 EKDKPLVVFLSRNFQEEKNKAAALKNAYVLMGKHQLELAIGFFLLGGEASSAINVCVKNL 1350
Query: 1350 GDVQLALVICRLVEKHGGPLERNLVTKFILPSSIERGDYWLTSLLEWELGNYSQSFLTML 1409
D QLALVICRL++ GG LE NL+ K+ILPS+++RGD+WL SLL+WELG Y +S L M
Sbjct: 1351 QDEQLALVICRLIDGQGGALESNLIKKYILPSAVQRGDFWLASLLKWELGEYHRSILAMA 1410
Query: 1410 GFQSTAVINNFALSSNSVAFMDPSIGLYCLMLANKNSMRNAIGEKNAAILGRWAALMRAT 1469
G + +SSN V+F+DPSIGLYCLMLA KNS++NA+GE+ A+ L RWA+LM AT
Sbjct: 1411 GCLENPATESSTVSSNHVSFVDPSIGLYCLMLATKNSVKNALGERTASTLSRWASLMAAT 1470
Query: 1470 ALNRCGLPLEALDCLSSSPSTIGGTDQESVLNIGHSHILPEILKPSAATGSSNWLLRDVA 1529
A +RCGLPLEAL+CLS S S GGT Q SV + G H + S SSNW+ V+
Sbjct: 1471 AFSRCGLPLEALECLSPSASGHGGTHQTSVPSNGQLHTTQGVFDHSVPH-SSNWVSSGVS 1529
Query: 1530 LHLESCAKLDLSLQYFSKLIRDHPSWPDLGFGRASKCFMDFEIHQYEKLVQNFQQKLYTA 1589
+++ +L L++Q+ S ++R+ A+ M+ E+ EK + FQ KL TA
Sbjct: 1530 STVDTHFRLGLAVQFLSMILRE-----------ATAPLMNSEVVSCEKFSR-FQHKLQTA 1577
Query: 1590 LAFFEQRFSMDSSSLIAKILSLLCNNGLLFIGYDLLHGYICQGKSQEKSSDTVDGLSLYF 1649
L F QRFS+ +S L ++ N GLL +G+++ G S +KS D L Y
Sbjct: 1578 LEQFHQRFSLSASYLRNMMILSAYNRGLLSMGHNIFQENSSSGLSDDKSHTDEDLLQ-YS 1636
Query: 1650 CQHKPLLKAAEDISIFLSRFIAATSITCSHLKSTNSENVRHHEVRSRWSNAQGYYFQSII 1709
K +LKA ++ S+ LSR IAA S+TC H EN +WSNA +YFQ I+
Sbjct: 1637 ALSKLILKATDEKSLVLSRIIAACSVTCLHSVPCFEENKVSSGPDPKWSNALRFYFQGIL 1696
Query: 1710 FSLWSLRAAMRTFSGSFPEELITPL-FLLDLYEYYVHFASAWLQRDSKGLLQVLQPVLIT 1768
S +LR ++R GS E+L T L +LDL EY + A AW+ D L +++QP++I+
Sbjct: 1697 ESFSNLRTSIRLCLGSSVEDLKTKLAVVLDLVEYCLRLAMAWVLGDVHCLFRMVQPLVIS 1756
Query: 1769 YTNGHTPYEVDMNNLKTFFHQSAELLTRNTSIDNMVGDLQVSKFVDDERSTDLMNSIPED 1828
Y NGH PYEVD+ ++K +HQ A + + S ++ + + S V++ + SIPED
Sbjct: 1757 YFNGHMPYEVDLESVKRVYHQEASVSVPDAS--DVGVNSKFSSVVENHGVGYPVYSIPED 1814
Query: 1829 ERWQIMGACLWQHMSRFMKHKLNSMSVKLDENHSSRLLGGHISSWTSSLTNPESASIGLK 1888
ER + AC W+H+S F+K KL S+S+ LD+ S+ + + TS ++ + + K
Sbjct: 1815 ERCLVTQACFWKHVSDFVKLKLVSISINLDDGISNSGSAENFDAQTSLDSSDDIVCVTEK 1874
Query: 1889 EQMRLLTLFLAQLLKSALLHISSHHVKQLAFFLRYKVENGFDIPTRRWLQEATPSQSGTL 1948
+ L + L S L +SS+HVKQL L+ K+E +PT WL E SQ+
Sbjct: 1875 -----IMSVLGKTLISTLAQLSSYHVKQLVLVLKQKLEKRLQVPTLLWLLECQGSQA--- 1926
Query: 1949 YQHLNQIVVSMNIINNKD-EAAISELLWDVCSDPSIIHEGFTQEKLNWRSYINCKLSKGW 2007
LN+ + + K+ + +S W +C DP ++HE F E + + K + W
Sbjct: 1927 -NFLNRDIPDAGVETEKNGDPVVSVRFWKLCVDPHLLHEAFLLENFDIFEWSKSKPLEDW 1985
Query: 2008 SHINEGVKLKHEIKKTCKNEDKLGSTLASGEVGSASKDLFRNSRTSPRSWHKDANMANEV 2067
S + V K+E+ C + + +S EV S + S +SP++ A ANE
Sbjct: 1986 SDMYREVIRKNELYVPCNQDGR-----SSNEVASLAN---HASNSSPKA----AVTANEN 2033
Query: 2068 IPFQAPKEICKRNGELFEALCVNSIDQRQGAIASNRKGIVFFNLEDEIPLHDQLKYIWAD 2127
FQ PKEI KR GEL EALC+N+I+ RQ A+ASNRKGI+FFNLED +Q YIW+D
Sbjct: 2034 SAFQNPKEIHKRTGELIEALCINAINHRQAALASNRKGIIFFNLEDGDSSQNQSDYIWSD 2093
Query: 2128 ADWPQNGWAGSESTPVPTFVSPGVGLGSNKGAHLGLGGATIGVGSLARPGRDLTGGLAFG 2187
ADWP NGWA SESTPVPT VS GVGLG KGAHLGLGGAT+GV SL++PG+ A
Sbjct: 2094 ADWPHNGWANSESTPVPTCVSLGVGLGDKKGAHLGLGGATVGVVSLSKPGK------ADR 2147
Query: 2188 IPGYAGIGA-----------------SALGWETQDDFEDYVDPPATVENISTRAFSSHPL 2230
+PGY+G+GA S LGWETQ++FE++VDPP TVE++ TRAFS+HP
Sbjct: 2148 VPGYSGLGAIADPGSFFTQIRRWLGVSGLGWETQEEFEEFVDPPPTVESVITRAFSNHPT 2207
Query: 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA 2290
P FLVGSSNTHIYLWEFG ++ATATYGVLPAANV PPYALASISA+QF +GHRFASAA
Sbjct: 2208 MPLFLVGSSNTHIYLWEFGNERATATYGVLPAANVSPPYALASISAVQFGPFGHRFASAA 2267
Query: 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWD 2350
LDGTVCTWQ EVGGRSN+ P+ES LCF+ HA DV YI+SSGS++AA+G+SS+G NVVVWD
Sbjct: 2268 LDGTVCTWQSEVGGRSNIHPVESSLCFNGHASDVGYISSSGSIVAASGYSSSGANVVVWD 2327
Query: 2351 TLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKT 2410
TLAPP++S+ASI CHEGGARSISVFDND+GSGS+SP+IVTGGK GDVG+HDFR+IATGK
Sbjct: 2328 TLAPPSTSQASINCHEGGARSISVFDNDIGSGSISPMIVTGGKNGDVGLHDFRFIATGKM 2387
Query: 2411 KKHKHSDRGGSSINTCAHADAQTGSGSKPGDQ--NGMLWYIPKAHLGSVTRISTVPNTSL 2468
KK ++ D GGSS + GDQ NGMLWYIPKAHLGSVT+I+T+P TSL
Sbjct: 2388 KKQRNPD-GGSSTD---------------GDQNKNGMLWYIPKAHLGSVTKIATIPRTSL 2431
Query: 2469 FLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFL 2528
FLTGSKDG+VKLWDAKAA+L++HW KLHERHTFLQP+SRG+GG++RAGVTDIQV GF+
Sbjct: 2432 FLTGSKDGEVKLWDAKAAKLIHHWPKLHERHTFLQPNSRGYGGIIRAGVTDIQVCPNGFI 2491
Query: 2529 SCGGDGSVKLIQLED 2543
+CGGDG+VK + L D
Sbjct: 2492 TCGGDGTVKFVSLVD 2506
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297828387|ref|XP_002882076.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297327915|gb|EFH58335.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2322 bits (6018), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1270/2557 (49%), Positives = 1624/2557 (63%), Gaps = 153/2557 (5%)
Query: 18 DPTEHLPLAFLRSEFIPTAPTRSTSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEE 77
DP ++LPL +RSE +P AP RS S+IDWLPDFAGYSW+AYGAS+LLVISH PSPL E+
Sbjct: 18 DPIDNLPLRQIRSEIVPPAPNRSQSSIDWLPDFAGYSWLAYGASTLLVISHLPSPLRGED 77
Query: 78 ALIGPIFRQVFALS-DNSLPVTSISWSPETPSIGQLAAASENCIFVFAHDSASSKGSFCW 136
+ GP FRQ+ +S D S PVTS+SWSP TPS+G+LA S N IF+FA DS++ GSFCW
Sbjct: 78 STNGPFFRQILEVSGDVSSPVTSVSWSPVTPSVGELAVGSGNYIFLFARDSSALNGSFCW 137
Query: 137 SQNAILVQGTKVEAIEWTGSGDGIVAGGMETVLWKKKNTLWEIAWKFKENYPQNLVSATW 196
SQNAILVQ TKVEAIEWTGSGDGI+ GG + VLWK++N WEIAWKF ++ Q+LVS+TW
Sbjct: 138 SQNAILVQETKVEAIEWTGSGDGIIVGGTDIVLWKRRNQSWEIAWKFSGDHLQDLVSSTW 197
Query: 197 SIEGPSATAASMSQL-DLLGPKEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQWRPSTR 255
S EGP ATA S +L D G EAGK V SDG+S Y K EL HPQ +SM+QWRP
Sbjct: 198 SFEGPFATATSWRKLPDECG--EAGKSVLAYYSDGES-YHKFELPHPQRISMIQWRPMAA 254
Query: 256 RHSPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGKTRKVAKDTNDHKTIRRSFCVGAIIEI 315
S +S R++L+TCCLDG VRLW E+D GKT+K KD DHK +SFCV A+IEI
Sbjct: 255 EQSAIGIGKSMRNLLMTCCLDGAVRLWSEVDGGKTKKGMKDVPDHK---KSFCVAAVIEI 311
Query: 316 NQALNGALGMDIVITWAKEIRCMFETGEGANHFISTGVYEHGGTGKCEWLVGYGPGSLVT 375
NQ L+G LG D+ + W + +T EG N F S Y+H GKCEWLVGYGPG+L T
Sbjct: 312 NQVLDGCLGRDLFLFWGTRTGGILKTTEGTNQFFSMEKYDHENVGKCEWLVGYGPGNLAT 371
Query: 376 LWAIHCLDDISPLRFPRVTLWKKQNLELEHPHNSGFSGFQGQS---LLNKVVISRDCVSG 432
LWA+HCLDDISP+RFPRVTLW KQ + + G S L KV + R+ + G
Sbjct: 372 LWAVHCLDDISPMRFPRVTLWAKQESNEIGAVSLSLADATGSSDRLPLKKVSVLRNNLYG 431
Query: 433 LPTICSLVHLSHCNSLVWSLLHAQRSGDVEDVSSDKSSTGQILSCSASRILSIEGHTGKI 492
P ICS ++LS N++ WS LH +S D ED S +KSS +L C ++L + GH GKI
Sbjct: 432 TPLICSSIYLSPQNTVYWSSLHTIKSHDSEDSSPNKSS---LLKCIDGKVLYLNGHGGKI 488
Query: 493 LQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDLPTLMPSWKLCGKLRTRKSCSN 552
LQVA P + E SLDSNGL++ WS ST N D P + SWK CG L+ ++
Sbjct: 489 LQVAFDPFIGEAGYTASLDSNGLIIIWSSSTYLNRAIDHPISVASWKPCGWLQNQEFRLK 548
Query: 553 YTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVCHYVCTIPFTGHGHYEDGP 612
YTSL WAPS L ++ LL+GH GG+DCF V+ D + HY+CTIP + + GP
Sbjct: 549 YTSLCWAPSSLKDERFLLVGHAGGVDCFSVRNCGKGDDGYLTHYICTIPSAVNSPLQSGP 608
Query: 613 ANIFSVPLPSCNDKTVMYNKFMLLGVWLK--GLESLSWEITFHSFDLSESCCGC-IDDNN 669
+IF+ PL + KT N+F+LL VW+K ++LSW +T H FD + S C C D +
Sbjct: 609 TSIFARPLSNSCGKTFKSNRFLLLSVWMKEKQFDALSWSVTLHHFDTAGSTCVCHFHDFD 668
Query: 670 TVKCSMCKFETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVVCPNNLVPMQQKLVYDN 729
+ FE TF GKK I + CSS+ PE H + VTSFAVV P+ +N
Sbjct: 669 STGLGKWLFEDTFAGKKNCIAIRSCSSEIPESHRDDEVTSFAVVNPSGRA-------IEN 721
Query: 730 DPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAISLTDGGR 789
S+ YTMATG +DGSL++WRS SST C+PWELVGML Q PVSAI LTD G
Sbjct: 722 VMNSESQAYTMATGQADGSLKIWRSSFQESSTPCVPWELVGMLTIGQNPVSAIFLTDSGH 781
Query: 790 KIATVSAASHSNAVSNVRIWESVCVTELGSFVLEDTLSFDTNIVAVNWLTLENGQSLLGV 849
KIA + +HS A + IWE + + + G F+LED L D +VAV W N Q LLGV
Sbjct: 782 KIAALCTENHSKATCTISIWEIIHLIDSGVFILEDKLHVDAEVVAVRWSIASNDQLLLGV 841
Query: 850 CLQNELKVY--AQRHYGGQILLDTKNSLKMQNWFCLAFSPTFAAH-DFTWGRRAIAIVVH 906
C Q EL+VY A++ + S + Q W C A + TF+A D WG +A+ +VH
Sbjct: 842 CTQKELRVYGIARQSCKSTSFAVSDYSSEAQIWQCFAVTHTFSAICDLWWGPKAMTCLVH 901
Query: 907 QSYLSIYSQFLFLIDKKHQAKCNSNVFIDNFCCHKSGINENIVSTIFTVCDSESSAGDQR 966
Y+S++ Q+L ++DKK + +F N N+V+ SE +
Sbjct: 902 NDYISLHGQWLAVVDKKQKIDNYPEIFAANL--------PNLVNATEEGRGSELLSDSGT 953
Query: 967 GDYESAPSVNI-----------DMKNDHLVASDQLKCGGAILGS------WSMLEIAEKL 1009
D + A + I + +D V S L G GS SM + EKL
Sbjct: 954 NDIKEADTAYISRGCIPLPSTSNAIDDGQVNSMSLI--GTAYGSDTINEIMSMGHMVEKL 1011
Query: 1010 RGSLPVYHPKALFLNIYSGNWKRAYVSVRHLVENLPSNYPSEKRYCYTKSSHIVPQILLS 1069
G+LP+YHP+AL + I+SGNWKRA ++RHL E + S+ SEK YT S + P ILLS
Sbjct: 1012 GGALPLYHPQALLVAIHSGNWKRASAALRHLSEYITSSDASEK--VYTVKSVLCPDILLS 1069
Query: 1070 TYFEGLLSKGSTDNGFQWSGLNTFSTSLQFRQFAYNMDLDASNSSSSTKSELSGFVELLQ 1129
Y+EG LS G FQW G + S +++ + A T E SGF E L+
Sbjct: 1070 KYYEGSLSTGPNPKDFQWGGTSGSSFNMESYSPNSSHSSPA------TDLEFSGFCEQLK 1123
Query: 1130 NVYELAGVTDAEKMEILAVVDLLNEFDNKHSASVYENLDEPGQRFWVELRFQLLCFFRRF 1189
+ + ++ EK++ A+ DLL E N HS SVY +LDE G+RFWV LRF+ L R
Sbjct: 1124 KLSDGGNISRIEKLQYFAIADLLCEISNPHSTSVYASLDEAGRRFWVTLRFKQLFLARSS 1183
Query: 1190 GKLVSAEELAVDSRLIAWAFHSECQETLFGSILPNEPTWPEMRALGVGFWYTDVTQLRTR 1249
GK S EEL +DS +I WAFHSE QE L GS+LPNE +W +MR+LG GFWY++V QLR+R
Sbjct: 1184 GKTASLEELDIDSSMIGWAFHSESQENLSGSLLPNEASWQQMRSLGFGFWYSNVAQLRSR 1243
Query: 1250 MEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQEEKNK 1309
MEKLAR QYLK K+PKDCALLYIALNR+QVLAGLFK+SKDEKDKPLV FLSRNFQEEKNK
Sbjct: 1244 MEKLARQQYLKNKNPKDCALLYIALNRVQVLAGLFKLSKDEKDKPLVVFLSRNFQEEKNK 1303
Query: 1310 AAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHGGPL 1369
AAALKNAYVL+G+HQLELAI FFLLGG+A+SA+ VC +NL D QLALVICRL++ GG L
Sbjct: 1304 AAALKNAYVLMGKHQLELAIGFFLLGGEASSAINVCVKNLQDEQLALVICRLIDGQGGAL 1363
Query: 1370 ERNLVTKFILPSSIERGDYWLTSLLEWELGNYSQSFLTMLGFQSTAVINNFALSSNSVAF 1429
E NL+ K+ILPS+++RGD+WL SLL+WELG Y QS M G V + +SSN ++F
Sbjct: 1364 ESNLIKKYILPSAVQRGDFWLASLLKWELGEYHQSIFAMAGCLGNPVTESSTVSSNHISF 1423
Query: 1430 MDPSIGLYCLMLANKNSMRNAIGEKNAAILGRWAALMRATALNRCGLPLEALDCLSSSPS 1489
+DPSIGLYCLMLA KN+++NA+GEK A+ L RWA LM ATA +RCGLPLEAL+CLS+S S
Sbjct: 1424 VDPSIGLYCLMLATKNNVKNAVGEKIASTLSRWATLMAATAFSRCGLPLEALECLSASAS 1483
Query: 1490 TIGGTDQESVLNIGHSHILPEILKPSAATGSSNWLLRDVALHLESCAKLDLSLQYFSKLI 1549
GGT Q S + G P+ + + SSNW+ V+ +++ +L L++Q+ S+++
Sbjct: 1484 GHGGTHQTSDPSNGQLRT-PKGVFDHSVPHSSNWVSSGVSSAVDTHFRLGLAVQFLSRIL 1542
Query: 1550 RDHPSWPDLGFGRASKCFMDFEIHQYEKLVQNFQQKLYTALAFFEQRFSMDSSSLIAKIL 1609
R+ A+ M+ EI EK + FQ +L TAL F QRFS+ SS L ++
Sbjct: 1543 RE-----------ATAPLMNSEIVSCEK-ISRFQHELETALEQFYQRFSLSSSYLRNMMI 1590
Query: 1610 SLLCNNGLLFIGYDLLHGYICQGKSQEKSSDTVDGLSLYFCQHKPLLKAAEDISIFLSRF 1669
N GLL +G+++ G S +KS T + + Y K +LKA E+ S LSR
Sbjct: 1591 LSAYNRGLLSMGHNIFQENSSSGLSDDKS-HTDEDIFQYSALSKLILKATEEKSFVLSRI 1649
Query: 1670 IAATSITCSHLKSTNSENVRHHEVRSRWSNAQGYYFQSIIFSLWSLRAAMRTFSGSFPEE 1729
IA S+TC H EN +WSNA +YFQ I+ S +LR ++R S E+
Sbjct: 1650 IATCSVTCLHSVPWFEENKVSSGPEPKWSNALRFYFQGILESFSNLRTSLRLCLSSSVED 1709
Query: 1730 LITPL-FLLDLYEYYVHFASAWLQRDSKGLLQVLQPVLITYTNGHTPYEVDMNNLKTFFH 1788
L T L + DL EY A AW+ D L +++QP++I Y +GH PYEVD+ ++K +H
Sbjct: 1710 LKTRLAVVFDLVEYCSRLAIAWVLGDVNCLFRMVQPLVIAYFHGHIPYEVDLESVKRVYH 1769
Query: 1789 QSAELLTRNTSIDNMVGDLQVSKFVDDERSTDLMNSIPEDERWQIMGACLWQHMSRFMKH 1848
Q A + S ++ + +VS+ V++ + SIPEDER + AC W+H+S F+KH
Sbjct: 1770 QEASASVPDAS--DVGVNSKVSRDVENYEVGYPVYSIPEDERCLVTQACFWKHVSDFVKH 1827
Query: 1849 KLNSMSVKLDENHSSRLLGGHISSWTSSLTNPESASIGLKEQMRLLTLFLAQLLKSALLH 1908
KL S+S+ LD+ S+ + + TS ++ + + K + L + L S L
Sbjct: 1828 KLGSISINLDDGISNNGSPENFDAQTSLDSSDDIVCVTEK-----IMSVLGKTLISTLAQ 1882
Query: 1909 ISSHHVKQLAFFLRYKVENGFDIPTRRWLQEATPSQSGTLYQHLNQIVVSMNIINNKDEA 1968
+SS+HVKQL L+ K+E +PT WL E SQ+ L + + + N +
Sbjct: 1883 LSSYHVKQLVLVLKPKLEKKIQVPTLLWLLECRGSQANFLKRDIPDAGIENE---NNGDP 1939
Query: 1969 AISELLWDVCSDPSIIHEGFTQEKLNWRSYINCKLSKGWSHINEGVKLKHEIKKTCKNED 2028
+S W +C DP +++E F E + + K + WS + V K+E+ C +
Sbjct: 1940 VVSVRFWKLCVDPHLLYEAFLLENFDIFEWSKSKPLEYWSDMYREVTRKNELHVPCNQDG 1999
Query: 2029 KLGSTLASGEVGSASKDLFRNSRTSPRSWHKDANMANEVIPFQAPKEICKRNGELFEALC 2088
+ +S EV S + +S+ K A ANE FQ PKEI KR GEL EALC
Sbjct: 2000 R-----SSNEVASLASHASNSSQ-------KAAITANENSAFQNPKEIHKRTGELIEALC 2047
Query: 2089 VNSIDQRQGAIASNRKGIVFFNLEDEIPLHDQLKYIWADADWPQNGWAGSESTPVPTFVS 2148
+N+I+ R A+ASNRKGI+FFNLED +Q YIW+DADWP NGWA SESTPVPT VS
Sbjct: 2048 INAINHRLAALASNRKGIIFFNLEDVDSCKNQSDYIWSDADWPHNGWANSESTPVPTCVS 2107
Query: 2149 PGVGLGSNKGAHLGLGGATIGVGSLARPGRDLTGGLAFGIPGYAGIGASALGWETQDDFE 2208
GVGLG KGAHLGLG WETQ++FE
Sbjct: 2108 LGVGLGDKKGAHLGLG------------------------------------WETQEEFE 2131
Query: 2209 DYVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPP 2268
++VDPP TVE + TRAFS+HP P FLVGSSNTHIYLWEFGKD+ATATYGVLPAANVPPP
Sbjct: 2132 EFVDPPPTVETVITRAFSNHPTMPLFLVGSSNTHIYLWEFGKDRATATYGVLPAANVPPP 2191
Query: 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYIT 2328
YALASISA+QF GHRFASAALDGTVCTWQ EVG RSN+ P+ES LCF+ HA DV YI+
Sbjct: 2192 YALASISAVQFGPCGHRFASAALDGTVCTWQSEVGERSNIHPVESSLCFNGHASDVEYIS 2251
Query: 2329 SSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLI 2388
SSGS++AA+G+SS+G NVVVWDTLAPP++S+ASI CHEGGARSISVFDND+GSGS+SP+I
Sbjct: 2252 SSGSIVAASGYSSSGTNVVVWDTLAPPSTSQASINCHEGGARSISVFDNDIGSGSISPMI 2311
Query: 2389 VTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQ--NGML 2446
VTGGK GD+G+HDFRYIATGK KK ++ D G S GDQ NGML
Sbjct: 2312 VTGGKNGDIGLHDFRYIATGKMKKQRNPD----------------GRSSTDGDQNKNGML 2355
Query: 2447 WYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSS 2506
WYIPKAHLGSVT+I+T+P TSLFLTGSKDG+VKLWDAKAA+L++HW KLHERHTFLQP+S
Sbjct: 2356 WYIPKAHLGSVTKIATIPRTSLFLTGSKDGEVKLWDAKAAKLIHHWPKLHERHTFLQPNS 2415
Query: 2507 RGFGGVVRAGVTDIQVVSRGFLSCGGDGSVKLIQLED 2543
RG+GG++RAGVTDIQ GF++CGGDG+VK + L D
Sbjct: 2416 RGYGGIIRAGVTDIQYCPNGFITCGGDGTVKFVSLRD 2452
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4415937|gb|AAD20167.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2290 bits (5935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1261/2549 (49%), Positives = 1617/2549 (63%), Gaps = 163/2549 (6%)
Query: 6 SGCSLQNANPCVDPTEHLPLAFLRSEFIPTAPTRSTSTIDWLPDFAGYSWVAYGASSLLV 65
SG + +P D +HLPL LRSE +P APTRS S+IDWLPDFA YSW+AYGAS+L+V
Sbjct: 10 SGLERGSGDPRTDRIDHLPLRQLRSEIVPPAPTRSQSSIDWLPDFANYSWLAYGASTLVV 69
Query: 66 ISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLAAASENCIFVFAH 125
ISH PSPL E++ GP FRQ+ +S PVT++ WSP TPS+G+LA S N IF+FA
Sbjct: 70 ISHLPSPLRGEDSTNGPFFRQILEVSGE--PVTAVCWSPVTPSVGELAVGSGNYIFLFAR 127
Query: 126 DSASSKGSFCWSQNAILVQGTKVEAIEWTGSGDGIVAGGMETVLWKKKNTLWEIAWKFKE 185
D KGSFCWSQNAILVQ T VEAIEWTGSGDGI+ GG + VLWK++N WEIAWKF
Sbjct: 128 DL---KGSFCWSQNAILVQETIVEAIEWTGSGDGIIVGGTDIVLWKRRNQSWEIAWKFSG 184
Query: 186 NYPQNLVSATWSIEGPSATAASMSQLDLLGPKE---AGKCVFICCSDGKSEYIKLELCHP 242
++ Q+LVS+TWS EGP ATA S + P E AGK V SDG+S Y EL HP
Sbjct: 185 DHLQDLVSSTWSFEGPFATATSWRKF----PAECDDAGKSVLAYYSDGES-YHNFELPHP 239
Query: 243 QPVSMVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGKTRKVAKDTNDHKT 302
Q +SM+QWRP S +S R+VL+TCCLDG VRLWCE+D GKT+K KD DHK
Sbjct: 240 QRISMIQWRPMAAEQSAIGIGKSMRNVLMTCCLDGAVRLWCEVDGGKTKKGMKDVPDHK- 298
Query: 303 IRRSFCVGAIIEINQALNGALGMDIVITWAKEIRCMFETGEGANHFISTGVYEHGGTGKC 362
+SFCV A+IEINQ L+G LG D+ + W +F+T EG N S Y++ GKC
Sbjct: 299 --KSFCVAAVIEINQVLDGCLGRDLFLFWGTRTGGIFKTIEGTNQVFSMEKYDNENVGKC 356
Query: 363 EWLVGYGPGSLVTLWAIHCLDDISPLRFPRVTLWKKQNLELEHPHNSGFSGFQGQS---L 419
EWLVGYGPG+ TLWA+HCLDDISP+RFPRVTLW KQ + + G S
Sbjct: 357 EWLVGYGPGNFATLWAVHCLDDISPMRFPRVTLWAKQESNEIGAGSLSLASATGSSDRLP 416
Query: 420 LNKVVISRDCVSGLPTICSLVHLSHCNSLVWSLLHAQRSGDVEDVSSDKSSTGQILSCSA 479
L KV + R+ + G P ICS ++LS N++ WS LH +S D ED S +KSS +L C
Sbjct: 417 LKKVSVLRNNLYGTPLICSSIYLSPQNTVYWSSLHTIKSHDSEDSSPNKSS---LLKCID 473
Query: 480 SRILSIEGHTGKILQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDLPTLMPSWK 539
++L ++GH GKILQVA P V E SLDSNGL++ S S N + P + SWK
Sbjct: 474 GKVLYLDGHGGKILQVASDPFVCEAGYTASLDSNGLIIICSSSVYLNRTIEHPISVASWK 533
Query: 540 LCGKLRTRKSCSNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVCHYVCT 599
CG+L+ ++ YTSL WAPS L ++ LL+GHVGG+DCF V+ D + HY+CT
Sbjct: 534 PCGRLQNQEFRLKYTSLCWAPSSLKDERFLLVGHVGGVDCFSVRNCGKGDDGYLTHYICT 593
Query: 600 IPFTGHGHYEDGPANIFSVPLPSCNDKTVMYNKFMLLGVWLKG--LESLSWEITFHSFDL 657
IPFT + + GP +IF+ PL + KT N+F+LL VW+K ++LSW +T H FD
Sbjct: 594 IPFTVNSPLQSGPTSIFAKPLSNSCGKTFKSNRFLLLSVWMKEKRFDALSWSVTLHHFDT 653
Query: 658 SESCCGC-IDDNNTVKCSMCKFETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVVCPN 716
+ S C C D +++ FE TF GK + + CSS+ PE H + VTSFAVV P+
Sbjct: 654 AGSTCDCHFHDFDSIGLGKWLFEDTFAGKTNCLAIRSCSSEIPESHREDEVTSFAVVNPS 713
Query: 717 NLVPMQQKLVYDNDPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQ 776
+N S+ YT+ATG +DGSL+LWRS SST WELVGML Q
Sbjct: 714 GRD-------LENGVNSESQAYTIATGQADGSLKLWRSSFQESSTPSGLWELVGMLTVGQ 766
Query: 777 GPVSAISLTDGGRKIATVSAASHSNAVSNVRIWESVCVTELGSFVLEDTLSFDTNIVAVN 836
PVSAISLTD G KIA + SHS A V IWE V + + G F+LED + D +VAV
Sbjct: 767 NPVSAISLTDSGHKIAALCTESHSKAARAVSIWEIVHLIDSGVFILEDKVHVDAEVVAVR 826
Query: 837 WLTLENGQSLLGVCLQNELKVY--AQRHYGGQILLDTKNSLKMQNWFCLAFSPTFAA-HD 893
W T N Q LLGVC Q E++VY A++ S + Q W C A + TF+A HD
Sbjct: 827 WSTTGNDQLLLGVCTQIEMRVYGIARQPCKSTSFAAYDYSSEAQIWQCFAVTRTFSAIHD 886
Query: 894 FTWGRRAIAIVVHQSYLSIYSQFLFLIDKKHQAKCNSNVFIDNFCCHKSGINENIVSTIF 953
WG +A+ +VH Y+S++ Q+L ++DKK + +F N N+V+
Sbjct: 887 LWWGPKAMTCLVHNDYISLHGQWLAVVDKKQKIDNYPEIFASNL--------PNLVNATE 938
Query: 954 TVCDSESSAGDQRGDYESA------------PSVNIDMKNDHLVASDQLKCGGAILGS-- 999
DSE + D A PS + + + + + + G GS
Sbjct: 939 EGRDSEFLSDSGTNDINEADTTSTSRGCIPLPSTSNAIDDGQV---NSMSLIGTAYGSNT 995
Query: 1000 ----WSMLEIAEKLRGSLPVYHPKALFLNIYSGNWKRAYVSVRHLVENLPSNYPSEKRYC 1055
SM + EKL G+LP+YHP AL + I SGNWKRA ++RHL E + S+ SEK Y
Sbjct: 996 IDDIMSMGHMVEKLGGALPLYHPHALLVAIRSGNWKRASAALRHLAEYITSSDTSEKGYA 1055
Query: 1056 YTKSSHIVPQILLSTYFEGLLSKGSTDNGFQWSGLNTFSTSLQFRQF------AYNMDLD 1109
S + P ILLS Y+EG LS G FQW G T + LQ+ QF +NM+
Sbjct: 1056 V--KSVLCPDILLSKYYEGSLSNGPNPKDFQWGG--TSGSMLQYSQFQSGLQSKFNMESY 1111
Query: 1110 ASNSSSSTKSELSGFVELLQNVYELAGVTDAEKMEILAVVDLLNEFDNKHSASVYENLDE 1169
+ NS + T E SGF E L+ + + ++ E ++ A+VDLL E N HS SVY +LDE
Sbjct: 1112 SPNSPA-TDLEFSGFCEQLKKLSDEGNISRIEILQYFAIVDLLCEISNPHSTSVYASLDE 1170
Query: 1170 PGQRFWVELRFQLLCFFRRFGKLVSAEELAVDSRLIAWAFHSECQETLFGSILPNEPTWP 1229
PG+RFWV LRF+ L R GK S EEL +DS +I WAFHSE QE L GS+LPNE +W
Sbjct: 1171 PGRRFWVTLRFKQLFLARSSGKTASLEELDIDSSMIGWAFHSESQENLSGSLLPNESSWQ 1230
Query: 1230 EMRALGVGFWYTDVTQLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKD 1289
+MR+ G GFWY++ QLR+RMEKLAR QYLK K+PKDCALLYIALNR+QVLAGLFK+SKD
Sbjct: 1231 QMRSQGFGFWYSNAAQLRSRMEKLARQQYLKNKNPKDCALLYIALNRVQVLAGLFKLSKD 1290
Query: 1290 EKDKPLVGFLSRNFQEEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNL 1349
EKDKPLV FLSRNFQEEKNKAAALKNAYVL+G+HQLELAI FFLLGG+A+SA+ VC +NL
Sbjct: 1291 EKDKPLVVFLSRNFQEEKNKAAALKNAYVLMGKHQLELAIGFFLLGGEASSAINVCVKNL 1350
Query: 1350 GDVQLALVICRLVEKHGGPLERNLVTKFILPSSIERGDYWLTSLLEWELGNYSQSFLTML 1409
D QLALVICRL++ GG LE NL+ K+ILPS+++RGD+WL SLL+WELG Y +S L M
Sbjct: 1351 QDEQLALVICRLIDGQGGALESNLIKKYILPSAVQRGDFWLASLLKWELGEYHRSILAMA 1410
Query: 1410 GFQSTAVINNFALSSNSVAFMDPSIGLYCLMLANKNSMRNAIGEKNAAILGRWAALMRAT 1469
G + +SSN V+F+DPSIGLYCLMLA KNS++NA+GE+ A+ L RWA+LM AT
Sbjct: 1411 GCLENPATESSTVSSNHVSFVDPSIGLYCLMLATKNSVKNALGERTASTLSRWASLMAAT 1470
Query: 1470 ALNRCGLPLEALDCLSSSPSTIGGTDQESVLNIGHSHILPEILKPSAATGSSNWLLRDVA 1529
A +RCGLPLEAL+CLS S S GGT Q SV + G H + S SSNW+ V+
Sbjct: 1471 AFSRCGLPLEALECLSPSASGHGGTHQTSVPSNGQLHTTQGVFDHSVPH-SSNWVSSGVS 1529
Query: 1530 LHLESCAKLDLSLQYFSKLIRDHPSWPDLGFGRASKCFMDFEIHQYEKLVQNFQQKLYTA 1589
+++ +L L++Q+ S ++R+ A+ M+ E+ EK + FQ KL TA
Sbjct: 1530 STVDTHFRLGLAVQFLSMILRE-----------ATAPLMNSEVVSCEKFSR-FQHKLQTA 1577
Query: 1590 LAFFEQRFSMDSSSLIAKILSLLCNNGLLFIGYDLLHGYICQGKSQEKSSDTVDGLSLYF 1649
L F QRFS+ +S L ++ N GLL +G+++ G S +KS D L Y
Sbjct: 1578 LEQFHQRFSLSASYLRNMMILSAYNRGLLSMGHNIFQENSSSGLSDDKSHTDEDLLQ-YS 1636
Query: 1650 CQHKPLLKAAEDISIFLSRFIAATSITCSHLKSTNSENVRHHEVRSRWSNAQGYYFQSII 1709
K +LKA ++ S+ LSR IAA S+TC H EN +WSNA +YFQ I+
Sbjct: 1637 ALSKLILKATDEKSLVLSRIIAACSVTCLHSVPCFEENKVSSGPDPKWSNALRFYFQGIL 1696
Query: 1710 FSLWSLRAAMRTFSGSFPEELITPL-FLLDLYEYYVHFASAWLQRDSKGLLQVLQPVLIT 1768
S +LR ++R GS E+L T L +LDL EY + A AW+ D L +++QP++I+
Sbjct: 1697 ESFSNLRTSIRLCLGSSVEDLKTKLAVVLDLVEYCLRLAMAWVLGDVHCLFRMVQPLVIS 1756
Query: 1769 YTNGHTPYEVDMNNLKTFFHQSAELLTRNTSIDNMVGDLQVSKFVDDERSTDLMNSIPED 1828
Y NGH PYEVD+ ++K +HQ A + + S ++ + + S V++ + SIPED
Sbjct: 1757 YFNGHMPYEVDLESVKRVYHQEASVSVPDAS--DVGVNSKFSSVVENHGVGYPVYSIPED 1814
Query: 1829 ERWQIMGACLWQHMSRFMKHKLNSMSVKLDENHSSRLLGGHISSWTSSLTNPESASIGLK 1888
ER + AC W+H+S F+K KL S+S+ LD+ S+ + + TS ++ + + K
Sbjct: 1815 ERCLVTQACFWKHVSDFVKLKLVSISINLDDGISNSGSAENFDAQTSLDSSDDIVCVTEK 1874
Query: 1889 EQMRLLTLFLAQLLKSALLHISSHHVKQLAFFLRYKVENGFDIPTRRWLQEATPSQSGTL 1948
+ L + L S L +SS+HVKQL L+ K+E +PT WL E SQ+
Sbjct: 1875 -----IMSVLGKTLISTLAQLSSYHVKQLVLVLKQKLEKRLQVPTLLWLLECQGSQA--- 1926
Query: 1949 YQHLNQIVVSMNIINNKD-EAAISELLWDVCSDPSIIHEGFTQEKLNWRSYINCKLSKGW 2007
LN+ + + K+ + +S W +C DP ++HE F E + + K + W
Sbjct: 1927 -NFLNRDIPDAGVETEKNGDPVVSVRFWKLCVDPHLLHEAFLLENFDIFEWSKSKPLEDW 1985
Query: 2008 SHINEGVKLKHEIKKTCKNEDKLGSTLASGEVGSASKDLFRNSRTSPRSWHKDANMANEV 2067
S + V K+E+ C + + +S EV S + S +SP++ A ANE
Sbjct: 1986 SDMYREVIRKNELYVPCNQDGR-----SSNEVASLAN---HASNSSPKA----AVTANEN 2033
Query: 2068 IPFQAPKEICKRNGELFEALCVNSIDQRQGAIASNRKGIVFFNLEDEIPLHDQLKYIWAD 2127
FQ PKEI KR GEL EALC+N+I+ RQ A+ASNRKGI+FFNLED +Q YIW+D
Sbjct: 2034 SAFQNPKEIHKRTGELIEALCINAINHRQAALASNRKGIIFFNLEDGDSSQNQSDYIWSD 2093
Query: 2128 ADWPQNGWAGSESTPVPTFVSPGVGLGSNKGAHLGLGGATIGVGSLARPGRDLTGGLAFG 2187
ADWP NGWA SESTPVPT VS GVGLG KGAHLGLG
Sbjct: 2094 ADWPHNGWANSESTPVPTCVSLGVGLGDKKGAHLGLG----------------------- 2130
Query: 2188 IPGYAGIGASALGWETQDDFEDYVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWE 2247
S LGWETQ++FE++VDPP TVE++ TRAFS+HP P FLVGSSNTHIYLWE
Sbjct: 2131 --------VSGLGWETQEEFEEFVDPPPTVESVITRAFSNHPTMPLFLVGSSNTHIYLWE 2182
Query: 2248 FGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSN 2307
FG ++ATATYGVLPAANV PPYALASISA+QF +GHRFASAALDGTVCTWQ EVGGRSN
Sbjct: 2183 FGNERATATYGVLPAANVSPPYALASISAVQFGPFGHRFASAALDGTVCTWQSEVGGRSN 2242
Query: 2308 VRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG 2367
+ P+ES LCF+ HA DV YI+SSGS++AA+G+SS+G NVVVWDTLAPP++S+ASI CHEG
Sbjct: 2243 IHPVESSLCFNGHASDVGYISSSGSIVAASGYSSSGANVVVWDTLAPPSTSQASINCHEG 2302
Query: 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCA 2427
GARSISVFDND+GSGS+SP+IVTGGK GDVG+HDFR+IATGK KK ++ D GGSS +
Sbjct: 2303 GARSISVFDNDIGSGSISPMIVTGGKNGDVGLHDFRFIATGKMKKQRNPD-GGSSTD--- 2358
Query: 2428 HADAQTGSGSKPGDQ--NGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA 2485
GDQ NGMLWYIPKAHLGSVT+I+T+P TSLFLTGSKDG+VKLWDAKA
Sbjct: 2359 ------------GDQNKNGMLWYIPKAHLGSVTKIATIPRTSLFLTGSKDGEVKLWDAKA 2406
Query: 2486 AQLVYHWSKLHERHTFLQPSSRGFGGVVR 2514
A+L++HW KLHERHTFLQP+SRG+GG++R
Sbjct: 2407 AKLIHHWPKLHERHTFLQPNSRGYGGIIR 2435
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222618659|gb|EEE54791.1| hypothetical protein OsJ_02193 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 1741 bits (4509), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1037/2542 (40%), Positives = 1479/2542 (58%), Gaps = 187/2542 (7%)
Query: 44 IDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFALSDNSLPVTSISWS 103
+ +LPD G WVAYGA+S LV+SH PSP + + G + + +S PV
Sbjct: 31 LSFLPDLGGLPWVAYGAASFLVVSHLPSPPREGSSSSGGVHEE----RRSSSPVLPPGHR 86
Query: 104 PETPSIGQLAAASENCIFVFAHDSASSKGSFCWSQNAILVQGTKVEAIEWTGSGDGIVAG 163
P P + +L F GSF W + + V A+ WTGSGDGI+
Sbjct: 87 PPCPRVRRLLLLEIGLGFA---------GSFGWVLRWAITETFAVAAVAWTGSGDGILLA 137
Query: 164 GMETVLWKKKNTLWEIAWKFKENYPQNLVSATWSIEGPSATAASMSQLDLLGPKEAGKC- 222
G +W + + W++AW+ Q+L SAT ++GP ATAA+ P G
Sbjct: 138 GEGVAMWARAESSWKLAWRCSPQVAQSLASATHFLQGPVATAAAT-------PSSEGGVP 190
Query: 223 -VFICCSDGKSEYIKLELCHPQPVSMVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRL 281
V + +D K K+EL HP+PVSM+QWRP R D +R +L+TCCLDGT+RL
Sbjct: 191 PVLVIVNDAKVGVEKVELAHPKPVSMIQWRP--RSLFVSDQSEVRREILMTCCLDGTLRL 248
Query: 282 WCEMDSGKTRKVAKDTNDHKTIRRSFCVGAIIEINQALNGALGMDIVITWAKEIRCMFET 341
W E ++ K++K H+ ++RSF V A+IE++ LNG LG+DI + WA E +
Sbjct: 249 WSEDEAAKSKK-------HRVLQRSFSVIAVIEMSNTLNGVLGVDITVKWAIETGSVVSR 301
Query: 342 GEGANHFISTGVYEHGGTGKCEWLVGYGPGSLVTLWAIHCLDDISPLRFPRVTLWKKQNL 401
E N + +G H GKCEWLV GPG+ V WA+HC+DD+SP R+PR+TLWK+ L
Sbjct: 302 DEDDNFTLFSGDPGHNQVGKCEWLVSAGPGASVNFWAVHCIDDVSPPRYPRITLWKQVKL 361
Query: 402 ELEHPHNSGFSGFQGQSLLNKVVISRDCVSGLPTICSLVHLSHCNSLVWSLLHAQRSGDV 461
+ SG S + VISR SG PT CSL+HL H NS +WS L + S +
Sbjct: 362 QSWTQSASGQQKSIDDSFFVEAVISRGLSSGPPTTCSLLHLLHDNSFIWSRLSSNLS--L 419
Query: 462 EDVSSDKSSTGQILSCSASRILSIEGHTGKILQVAVHPCVSEFELAVSLDSNGLLLFWSL 521
S + + LSC +S+ ++ GH G I QV+VHP E ELAVS+DS+ L FWSL
Sbjct: 420 NSGGHALSDSAKSLSCYSSQTINQHGHNGSIKQVSVHPYSCEIELAVSMDSSRTLHFWSL 479
Query: 522 STISNCISDL--PTLMPSWKLCGK--LRTRKSCSNYTSLRWAPSLLDEDMVLLMGHVGGI 577
ST+S IS L PT P WKL K L ++ Y+ L WAPS++ ++ L++G G
Sbjct: 480 STLSTLISTLHAPT-YPLWKLLCKFDLCDIQADVEYSCLCWAPSVIQQNRFLVLGSEKGA 538
Query: 578 DCFIVKISQTEVDDIVCHYVCTIPFTGHGHYEDGPANIFSVPLPSCNDKTVMYNKFMLLG 637
DCF+V I Q E D + C + TIPF + E P +I ++PL S D + N F+++
Sbjct: 539 DCFVVSI-QNEGDVLSCQKMFTIPFFEGSNAEGPPDSIHTIPLTSNCDGPFVNNSFVVVC 597
Query: 638 VWLKGLESLSWEITFHSFDLSESC--CGCIDDNNTVKCSMCKFETTFCGKKYFIGV-NPC 694
+W ++LSW++ H + C C C +++ + T+ F V
Sbjct: 598 LWRTSFQALSWKVVLH-LENQNKCGMCLCGFSASSLSTADQGRHGTYLNADMFSAVICKG 656
Query: 695 SSQFPEPHTRNWVTSFAVVCPNNLVPMQQKLVYDNDPCSKIPPYTMATGYSDGSLRLWRS 754
SS FP + T + NN V Q+ C Y +ATGYSDG+++LW+
Sbjct: 657 SSVFPTCLDGEYPTCVSATPLNNTVLSLQQHGSGTASC-----YHIATGYSDGTVKLWKM 711
Query: 755 ELGG----SSTSCMPWELVGMLVAHQGPVSAISLTDGGRKIATVSAASHSNAVSNVRIWE 810
+ W+LVG A +GP++AISL++ GR IATV N S + IW+
Sbjct: 712 SFADNPLHTEKESHIWQLVGTFGADRGPITAISLSNCGR-IATVGRNVQKNTTS-IHIWK 769
Query: 811 SVCVTELGSFVLEDTLSFDTNIVAVNWLTLENGQSLLGVCLQNELKVYAQRHYGGQILLD 870
+V + GSF+LED L+ ++V ++WL+L +G+ LL V L NEL +Y+ +H + +L
Sbjct: 770 AVKLMGDGSFLLEDALTLQGSVVGLDWLSLGDGRFLLAVYLLNELHIYSHKHPSFKNVLH 829
Query: 871 TKNSLKMQNWFCLAFSPTFAAHD---FTWGRRAIAIVVHQSYLSIYSQFLFLIDKKHQAK 927
T NS + W C+A S + HD F WG +A ++VH+++L+++S +L +A
Sbjct: 830 TVNSKEKHLWSCIALS--HSPHDIASFLWGPKATGVLVHKNHLALFSSWLV-----RRAN 882
Query: 928 CNSNVFIDNFCCHKSGINENIVSTIFTVCDSESSAGDQRGDYESAPSVNIDMKNDHLVAS 987
+S D C + I+E + F D G + S++ + N L+
Sbjct: 883 ESSTQICD---CPAADIHELPCTKHFN--------EDIFGRF----SLSENYSNTMLLQK 927
Query: 988 DQLKCGGAILGSWSMLEIAEKLRGSLPVYHPKALFLNIYSGNWKRAYVSVRHLVENLPSN 1047
C + W++L+IA K+ G L YHP+AL ++YSG WKRA ++HLV+++ +N
Sbjct: 928 HSAHCSNDL---WNLLDIAAKMSGPLASYHPRALIQSLYSGQWKRANTVLQHLVQSMQAN 984
Query: 1048 YPS----EKRYCYTKSSHIVPQILLSTYFEGLLSKGSTDNGFQWSGLNTFSTSLQFRQFA 1103
S E +C KS H +P+ LS F + S ++ G W G N ST+ +
Sbjct: 985 KISNTLLECSFC-GKSCHNIPECPLSESFTDMTSNDISNRGLLW-GDNQRSTAFSLLSPS 1042
Query: 1104 YNMDLDASNSSSSTKSELSGFVELLQNVYELAGVTDAEKMEILAVVDLLNEFDNKHSASV 1163
+ +++++ S+ S +LL ++ ++D E+ +I+A+ DLL + ++ AS
Sbjct: 1043 NSYPRMEDINTTTSTSQSSEINKLLATNVSISTISDMERTQIVALSDLLGKITDQSHASP 1102
Query: 1164 YENLDEPGQRFWVELRFQLLCFFRRFGKLVSAEELAVDSRLIAWAFHSECQETLF-GSIL 1222
Y++LDE G+ + L K+ + ++ L++ +S ++ S+L
Sbjct: 1103 YKSLDEAGRSSNAYMHLGDL-------KIHPVPKSSMLILLLSRGPYSLIVRMIYLISVL 1155
Query: 1223 PNEPTWPEMRALGVGFWYTDVTQLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAG 1282
P EP+W EMR LG+G WYT+V+QLRT+MEKLARLQYLK KDPKDCALLYIALNR +VL G
Sbjct: 1156 PAEPSWSEMRNLGMGLWYTNVSQLRTKMEKLARLQYLKSKDPKDCALLYIALNRTKVLVG 1215
Query: 1283 LFKISKDEKDKPLVGFLSRNFQEEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAV 1342
LFKIS+DEKDK L FLSRNFQEEK+K+AALKNAYVL+GRHQ ELAIAFFLLGGD +SA+
Sbjct: 1216 LFKISRDEKDKRLYEFLSRNFQEEKHKSAALKNAYVLMGRHQWELAIAFFLLGGDTSSAI 1275
Query: 1343 TVCARNLGDVQLALVICRLVEKHGGPLERNLVTKFILPSSIERGDYWLTSLLEWELGNYS 1402
+VCA+NL D QLA+VICRL+E GGPLERNL+ +LP ++++GD+WL+SLLEW LGNYS
Sbjct: 1276 SVCAKNLQDEQLAIVICRLLEGSGGPLERNLIANVLLPEAVDKGDHWLSSLLEWMLGNYS 1335
Query: 1403 QSFLTMLGFQSTAVINNFALSSNSVAFMDPSIGLYCLMLANKNSMRNAIGEKNAAILGRW 1462
QS +L ++I ++ ++ F DP +G YC ++A K+S RN +GE +A L +
Sbjct: 1336 QSVNQLLDCHLKSLIEESSIPGDTNVFADPGVGQYCAIIATKSSFRNCVGEAQSANLSKL 1395
Query: 1463 AALMRATALNRCGLPLEALDCLSSSPSTIGGTDQESVLNIGHSHILPEILKPSAATGSSN 1522
+ M + ALNRCGLPLEAL+ L + S I G D S L+ G I+ IL P A SSN
Sbjct: 1396 SLAMASCALNRCGLPLEALEYLCCN-SGIEGKDNTS-LDGGDKKIVYGILNPFHA--SSN 1451
Query: 1523 WLLRDVALHLESCAKLDLSLQYFSKLIRDHPSWPDLGFGRASKCFMDFEIHQYEKLVQNF 1582
WL V +ES K+ ++ +Y S+++R+ S+C + +K++Q F
Sbjct: 1452 WLSASVVSDVESNLKITMASKYLSRVLRNQ--------SLCSRCSLPL---TKDKVLQEF 1500
Query: 1583 Q--------QKLYTALAFFEQRFSMDSSSLIAKILSLLCNNGLLFIGYDLLHGYICQGKS 1634
+ + AL F+++FS+ + + KIL+ CN+G+ F+ Y LL G I
Sbjct: 1501 NSNHVNELSRDVKAALQVFDKKFSLQVADIAEKILTFCCNDGIFFLAYVLLWGSI----- 1555
Query: 1635 QEKSSDTVDGL-SLYFCQHKPL----LKAAEDISIFLSRFIAATSITCSHLKSTNSENVR 1689
SSD G L C P+ + ++++ FL++++ + CS L +
Sbjct: 1556 ---SSDVGTGTCGLEGCAFHPIDYMFMVSSKESCKFLTQYVVSCCFICSALNMDCANTTP 1612
Query: 1690 HHEVRSRWSNAQGYYFQSIIFSLWSLRAAMRTFSGSFPEELITPLFLLDLYEYYVHFASA 1749
++ A +F S L + RTF ++T ++DL EY + F+ +
Sbjct: 1613 CTIKVGKYIMASLSHFLSTSRLLLK-QDNTRTFVLGRTSAMLT---VMDLLEYNMEFSFS 1668
Query: 1750 WLQRDSKGLLQVLQPVLITYTNGHTPYEVDMNNLKTFFH---QSAELLTRNTSIDNMVGD 1806
WL D K LL + PV+ N + ++V ++ L H + T +++ ++ +
Sbjct: 1669 WLCHDIKALLTMTSPVIGACVNRES-FQVLLDQLLQAVHDKIHGVSIGTDGGTVNGLLCN 1727
Query: 1807 LQVSKFVDDERSTDLMNSIPEDERWQIMGACLWQHMSRFMKHKLNSMSVKLDENHSSRLL 1866
+Q ERS + S+P DE+W ++G LW +S FMK L K
Sbjct: 1728 IQ------QERSEN--QSLPIDEKWHLIGISLWTRLSSFMKQFLTEFVEK---------- 1769
Query: 1867 GGHISSWTSSLTNPESASIGLKEQMRLLTLFLAQLLKSALLHISSHHVKQLAFFLRYKVE 1926
I TS+ + + K+ L++ +A+ L +L +SS VK A F R KV
Sbjct: 1770 -ERIELETSA------SDVEFKD---LISSVVAKFLMGSLHFVSSLLVKLHASFFREKVL 1819
Query: 1927 NGFDIPTRRWLQEATPSQSGTLYQHLNQIVVSMNIINNKDEAAISELLWDVCSDPSIIHE 1986
+ WL + P + ++ + I + N+++ + LW++ + P I
Sbjct: 1820 KKSNSSVLFWLSQ--PRSNNNSHEQFSSI---FQLANSENIEVFFDTLWEISAHPVDICT 1874
Query: 1987 GFTQEKLNWRSYINCKLSKGWSHINEGVKLKHE---IKKTCKNEDKLGSTLASGEVGSAS 2043
F E++N + L++ W + E ++ E +++ +N D L S +
Sbjct: 1875 AFVDEEMNCFPLNSISLTRSWKAMTEATLVESENNFAQRSEENRDNLSS--------KNN 1926
Query: 2044 KDLFRNSRTSPRSWHK--DANMANEVIPFQAPKEICKRNGELFEALCVNSIDQRQGAIAS 2101
+ + R+ +P + + F+ P+E+ +RNGEL EA+C+NSI+++QGAIA+
Sbjct: 1927 EKIQRSIDNTPYGVEVTLEPKRKGLIADFERPRELVRRNGELLEAICLNSINEQQGAIAT 1986
Query: 2102 NRKGIVFFNLEDEIPLHDQLKYIWADADWPQNGWAGSESTPVPTFVSPGVGLGSNKGAHL 2161
NRKG+VFFN D+ + +YIWA +DWP +GWAG ESTP T SP VGLG KG+HL
Sbjct: 1987 NRKGLVFFNWNDKQDNKNLAEYIWAGSDWPLDGWAGCESTPTSTSFSPSVGLGRRKGSHL 2046
Query: 2162 GLGGATIGVGSLARPGRDLTGGLAFGIPGYAGIGASALGWETQDDFEDYVDPPATVENIS 2221
GG TI +GSLA+PGRDLTGG AFGIPGYAGIGAS GW D+FED+VDPPAT+ENI
Sbjct: 2047 SSGGPTISLGSLAKPGRDLTGGGAFGIPGYAGIGASGFGWGEPDEFEDFVDPPATLENIH 2106
Query: 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH 2281
+RA S HP P LVGSSNTH+YLWEFGKD A ATYGVLPAAN+PPPYALASISA+QFD+
Sbjct: 2107 SRALSRHPSLPLLLVGSSNTHVYLWEFGKDSAMATYGVLPAANIPPPYALASISAVQFDY 2166
Query: 2282 YGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSS 2341
YG RFA+AALDGTVCTWQ+EVGGRSNV P ES LCF++HA DV+++T+SGSV+AAAG SS
Sbjct: 2167 YGQRFATAALDGTVCTWQVEVGGRSNVHPTESSLCFNTHASDVAFLTASGSVLAAAGCSS 2226
Query: 2342 NGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHD 2401
NG NVV+WDTLAPP++ + SI CHEGG RS+SVFD ++G GS+SPLIVTGGK GDV +HD
Sbjct: 2227 NGANVVIWDTLAPPSTCQTSIMCHEGGVRSLSVFDRNIGCGSISPLIVTGGKSGDVTLHD 2286
Query: 2402 FRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRIS 2461
FR+I+TGKTK H+ S+ ++ + D ++G+ S +GM+W+IPKAH GSV+ +S
Sbjct: 2287 FRFISTGKTKHHRSSNEHDVKASSTSMHDTKSGT-SNGVSNSGMIWHIPKAHTGSVSSVS 2345
Query: 2462 TVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQ 2521
T+PNTSLFLTGSKDGDVKLWDAK++QLV+HW KLHERHTF QP+SRGFGGVVRA VTDIQ
Sbjct: 2346 TIPNTSLFLTGSKDGDVKLWDAKSSQLVFHWQKLHERHTFFQPTSRGFGGVVRAAVTDIQ 2405
Query: 2522 VVSRGFLSCGGDGSVKLIQLED 2543
V+ GF+SCGGDGSVKL+Q+++
Sbjct: 2406 VLPNGFVSCGGDGSVKLVQVKN 2427
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356522498|ref|XP_003529883.1| PREDICTED: uncharacterized protein LOC100789935 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1717 bits (4447), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 914/1710 (53%), Positives = 1158/1710 (67%), Gaps = 67/1710 (3%)
Query: 17 VDPTEHLPLAFLRSEFIPTAPTRSTSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQE 76
++P +HLPL LRS+ +P APT S ST+D+LP F+GYSW+AY ASSLL ISHFPSPLS
Sbjct: 7 MNPIDHLPLRLLRSDTVPPAPTFSESTVDFLPHFSGYSWIAYAASSLLTISHFPSPLSPH 66
Query: 77 EALIGPIFRQVFALSDNSLPVTSISWSPETPSIGQLAAASENCIFVFAHDSASSKGSFCW 136
+ IGP FRQ F LS + PV +++WSP +PS G LAAA+++CI++F HDSA+ KGSFCW
Sbjct: 67 QTRIGPFFRQSFQLSAH--PVAAVAWSPSSPSSGDLAAAADDCIWLFRHDSAAGKGSFCW 124
Query: 137 SQNAILVQGTKVEAIEWTGSGDGIVAGGMETVLWKKKNTLWEIAWKFKENYPQNLVSATW 196
SQNA+LVQ KV I+WTGSGDGI++ GME V WKK NT WE+AWKFK + PQ LV ATW
Sbjct: 125 SQNAVLVQHMKVANIKWTGSGDGIISVGMEVVFWKKSNTCWEVAWKFKADQPQTLVCATW 184
Query: 197 SIEGPSATAASMSQLDLLGP--KEAGKCVFICCSDGKSEYIKLELCHPQPVSMVQWRPST 254
SIEGPSATAA S+ + G E KCV +C S+G SEY K++L HP PV M+QWRPS
Sbjct: 185 SIEGPSATAAHPSREHIEGTLTNEESKCVLVCQSNGLSEYSKVKLHHPLPVVMIQWRPSR 244
Query: 255 RRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGKTRKVAKDTNDHKTIRRSFCVGAIIE 314
+ S K S RHVLLTC LDGT RLW E+D+ K R+ AKD ND K SFCV A+IE
Sbjct: 245 GKLSNRYGKCSVRHVLLTCSLDGTARLWSEIDNAKARRTAKDINDQKNAGCSFCVVAVIE 304
Query: 315 INQALNGALGMDIVITWAKEIRCMFETGEGANHFISTGVYEHGGTGKCEWLVGYGPGSLV 374
INQ+LN L DI + W E +F+T + A S +EH C+WLVG+GPG L+
Sbjct: 305 INQSLNATLSSDIFVRWGTEFEGLFQTDKEAKQVFSKEGFEHD-VRNCDWLVGFGPGMLL 363
Query: 375 TLWAIHCLDDISPLRFPRVTLWKK---QNLELEHPHNSGFSGFQGQSLLNKVVISRDCVS 431
+ WA+HCLDD+SPLRFPRVTLWKK QN ++ + + S F+ L+KV+I R C+
Sbjct: 364 SFWAVHCLDDVSPLRFPRVTLWKKHELQNHDIANVYKFNSSDFKNALFLHKVIILRSCLF 423
Query: 432 GLPTICSLVHLSHCNSLVWSLLHAQRSGDVEDVSSDKSSTGQILSCSASRILSIEGHTGK 491
G PTICS + L CNSLVWS Q + + S+D +T I S +L+++GH+GK
Sbjct: 424 GPPTICSSLQLLPCNSLVWSNFRIQTIHNAVEDSNDNVNTDNISSHLTGGVLNLDGHSGK 483
Query: 492 ILQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDLPTLMPSWKLCGKLRTRKSCS 551
IL+V++HPC + + A SLDSNGLLLFWSLS ISNCI PTL+P+ +LCGKL T+ SCS
Sbjct: 484 ILKVSLHPCTCKVQFAASLDSNGLLLFWSLSNISNCILGCPTLVPTMELCGKLATQDSCS 543
Query: 552 NYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVCHYVCTIPFTGHGHYEDG 611
YTSL+WAPS+L + +V MGH GIDCFIV I Q+E ++I CHY+CTIPF+GHG YEDG
Sbjct: 544 LYTSLKWAPSILGDKLVFFMGHTRGIDCFIVNICQSEEENIECHYLCTIPFSGHGPYEDG 603
Query: 612 PANIFSVPLPSCNDKTVMYNKFMLLGVWLKGLESLSWEITFHSFDLSESCCGCIDDNNTV 671
P +IF++PL S DKT NK MLL +W+ ++LSWE+ HSFD+S +CC C D ++
Sbjct: 604 PFDIFTIPLNSTCDKTFRNNKLMLLAIWMGRFQALSWEVNLHSFDMSTNCCECNFDVKSI 663
Query: 672 -KCSMCKFETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVVCPNNLVPMQQKLVYDND 730
CS+ FE+TF KKY I VNPCS +FP +++ VTSFAV L QQ+ ND
Sbjct: 664 DNCSVRAFESTFANKKYCITVNPCSCEFPS--SKDLVTSFAVADSGTLSHRQQEFSLAND 721
Query: 731 PCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAISLTDGGRK 790
CS P Y MATG SDG L+LW+S+ G S T +PWELVG VAH GP+ I L + G K
Sbjct: 722 LCSSYPAYIMATGSSDGILKLWKSKPGNSLTQHLPWELVGSFVAHDGPIKDICLANCGEK 781
Query: 791 IATVSAASHSNAVSNVRIWESVCVTELGSFVLEDTLSFDTNIVAVNWLTLENGQSLLGVC 850
IAT S+SNA++ + IW++V + G+F+LED + +++++A+ WLTL G+ LLGVC
Sbjct: 782 IATFCYESNSNAINTIHIWDAVPLISAGTFILEDKIKTESDVIALKWLTLGTGELLLGVC 841
Query: 851 LQNELKVYAQRHYGGQILLDTKNSLKMQNWFCLAFSPT-FAAHDFTWGRRAIAIVVHQSY 909
LQNEL VYA + G L D+ N KM W C+A++ T +DF WG RA A+V+H +Y
Sbjct: 842 LQNELHVYAPKRCVGTTLSDSVNFPKMNIWVCIAYAHTSIPIYDFLWGPRAAAVVIHGNY 901
Query: 910 LSIYSQFLFLIDKKHQAK---CNSNVFIDNFCCHKSGINENIVSTIFTVCD----SESSA 962
SI+S +LF DKK +K C+S + + C K I E+I+S++FT D E S
Sbjct: 902 FSIFSHWLFHEDKKQGSKFRPCDSKP--NTYNC-KDEIYEDILSSVFTEYDIGAYREQSL 958
Query: 963 GDQRGDYESAPSVNIDMKNDH---LVASDQLKCGGAI-LGSWSMLEIAEKLRGSLPVYHP 1018
GD D++S S+ I+MK++ +A +QLK +G WS+LE+AE + GSLP YHP
Sbjct: 959 GDSHADFDSVQSIKINMKDNSSSLFLAKEQLKSELLTKVGLWSILEVAEIISGSLPTYHP 1018
Query: 1019 KALFLNIYSGNWKRAYVSVRHLVENLPSNYPSEKRYCYTKSSHIVPQILLSTYFEGLLSK 1078
L NI SGNWKRAYV+VRHLVE L +NY +KR+ + +P +LLS Y EG + K
Sbjct: 1019 DVLLTNISSGNWKRAYVAVRHLVECL-TNYDPKKRHISKRIG--LPNVLLSYYLEGCIPK 1075
Query: 1079 GSTDNGFQWSGLNTFSTSLQFRQ-----FAYNMDLDASNSS--SSTKSELSGFVELLQNV 1131
GS GFQW G TS+ Q F Y+ D N S SSTKSEL+ F+E L+
Sbjct: 1076 GSQPKGFQWGGDAALITSISQAQSSLFRFPYHSDSSVENESISSSTKSELNDFIESLEKF 1135
Query: 1132 YELAGVTDAEKMEILAVVDLLNEFDNKHSASVYENLDEPGQRFWVELRFQLLCFFRRFGK 1191
+L + D EK +ILA++DLL+E + HS+S Y++LDEPG+RFWV LRFQ L F R+F +
Sbjct: 1136 PDLPFLVDIEKTQILAIIDLLSEVSSAHSSSAYQSLDEPGRRFWVALRFQQLLFLRKFAR 1195
Query: 1192 LVSAEELAVDSRLIAWAFHSECQETLFGSILPNEPTWPEMRALGVGFWYTDVTQLRTRME 1251
S EEL VDSRL WA+HS+C + LFGS++PNEP+W EMRALG+GFWY ++ QLR RME
Sbjct: 1196 AASFEELLVDSRLFVWAYHSDCLDNLFGSVIPNEPSWQEMRALGMGFWYANIPQLRARME 1255
Query: 1252 KLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQEEKNKAA 1311
KLAR QYLK K+PKDCALLYIALNR+QVLAGLFKISKDEKDKPLVGFLSRNFQ+EKNKAA
Sbjct: 1256 KLARAQYLKNKNPKDCALLYIALNRVQVLAGLFKISKDEKDKPLVGFLSRNFQDEKNKAA 1315
Query: 1312 ALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHGGPLER 1371
ALKNAYVLLG+HQLELAIAFFLLGGD +SA+ +CA+NLGD QLALVICRLVE HGGPLE
Sbjct: 1316 ALKNAYVLLGKHQLELAIAFFLLGGDHSSAINICAKNLGDEQLALVICRLVEGHGGPLEH 1375
Query: 1372 NLVTKFILPSSIERGDYWLTSLLEWELGNYSQSFLTMLGFQSTAVINNFALSSNSVAFMD 1431
+L+TK+ILP +I++GDYWL SLLEWE+GNY QSF ML F V + SN F+D
Sbjct: 1376 HLITKYILPFAIDKGDYWLASLLEWEMGNYYQSFYRMLEFSVNPVPRESTVMSNCGPFLD 1435
Query: 1432 PSIGLYCLMLANKNSMRNAIGEKNAAILGRWAALMRATALNRCGLP-------------- 1477
P++G YC MLA KNSMRNA+GE+N+AIL RWA LM AL RCG P
Sbjct: 1436 PTVGFYCQMLATKNSMRNAVGEQNSAILLRWATLMTVAALKRCGNPCEQGHFCLYVFIAL 1495
Query: 1478 ----LEALDCLSSSPSTIGGTDQESVLNIGHSHILPEILKPSAATGSSNWLLRDVALHLE 1533
LEAL+ SSS S G DQES L H +L LKP SNWL ++++HLE
Sbjct: 1496 YVGVLEALEYFSSSLSMPGTADQESELGDSHD-VLSSTLKP-LPRKCSNWLSANMSVHLE 1553
Query: 1534 SCAKLDLSLQYFSKLIRDHPSWPDLGF---GRASKCFMDFEIHQYEKLVQNFQQKLYTAL 1590
KL+L+L Y SKLI++HPSW D G AS D + QYEK V++F+QKLYT L
Sbjct: 1554 FHIKLNLALCYLSKLIKEHPSWLDTFAEYNGEASDS--DEYMMQYEKSVESFKQKLYTGL 1611
Query: 1591 AFFEQRFSMDSSSLIAKILSLLCNNGLLFIGYDLLHGY----ICQGKSQEKSSDTVDGLS 1646
A FE+RF + LI+ IL LLC++G L+IGYD+ GY + + Q S D+
Sbjct: 1612 ALFERRFLLAPRCLISMILLLLCHHGSLYIGYDMTDGYTQAELMENSQQNSSIDSKPKFL 1671
Query: 1647 LYF--CQHKPLLKAAEDISIFLSRFIAATS 1674
F C L K +E + L F+ A S
Sbjct: 1672 DAFQCCFEAWLQKNSEALLYMLEPFLVAQS 1701
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2548 | ||||||
| MGI|MGI:2443926 | 3013 | Dmxl1 "Dmx-like 1" [Mus muscul | 0.114 | 0.096 | 0.307 | 1.3e-47 | |
| UNIPROTKB|Q8TDJ6 | 3036 | DMXL2 "DmX-like protein 2" [Ho | 0.106 | 0.089 | 0.312 | 3.9e-47 | |
| FB|FBgn0023458 | 3429 | Rbcn-3A "Rabconnectin-3A" [Dro | 0.097 | 0.072 | 0.318 | 2.2e-45 | |
| DICTYBASE|DDB_G0283535 | 2792 | DDB_G0283535 "DmX-like protein | 0.106 | 0.097 | 0.306 | 4.5e-44 | |
| MGI|MGI:2444630 | 3032 | Dmxl2 "Dmx-like 2" [Mus muscul | 0.088 | 0.074 | 0.331 | 4.5e-44 | |
| RGD|1586163 | 3055 | Dmxl2 "Dmx-like 2" [Rattus nor | 0.088 | 0.073 | 0.336 | 7.9e-39 | |
| SGD|S000003794 | 1357 | RAV1 "Subunit of the RAVE comp | 0.105 | 0.198 | 0.285 | 3.8e-27 | |
| ASPGD|ASPL0000051923 | 1373 | AN0703 [Emericella nidulans (t | 0.110 | 0.205 | 0.274 | 2.1e-25 | |
| POMBASE|SPBC1105.10 | 1297 | rav1 "RAVE complex subunit Rav | 0.075 | 0.148 | 0.29 | 2.9e-15 | |
| CGD|CAL0004435 | 1235 | orf19.5395 [Candida albicans ( | 0.082 | 0.170 | 0.242 | 2.9e-05 |
| MGI|MGI:2443926 Dmxl1 "Dmx-like 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 348 (127.6 bits), Expect = 1.3e-47, Sum P(11) = 1.3e-47
Identities = 98/319 (30%), Positives = 155/319 (48%)
Query: 1134 LAGVTDAEKMEILAVVDLLNEF-----DNKHSASVYENLDEPGQRFWVEXXXXXXXXXXX 1188
L G+T E+M ++A+ D + +++ E LDE G +F +
Sbjct: 1496 LPGLTRMEQMSLMALADTIATTSTDIGESRDRNQGGETLDECGLKFLLAVRLHTFLTTSL 1555
Query: 1189 XGKLVSAEELAVDSRLIAWAFHSECQETLFGSILP----NEPTWPEMRALGVGFWYTDVT 1244
+ + AWAFHS +E L ++LP ++PTW E+RA+GVG+W +
Sbjct: 1556 PAYRAQLLHQGLSTGHFAWAFHSVAEEELL-NMLPAMQKDDPTWSELRAMGVGWWVRNAR 1614
Query: 1245 QLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQ 1304
LR +EK+A+ + + DP D A+ Y+A+ + V+ GL++ KD K + F NF+
Sbjct: 1615 ILRRCIEKVAKAAFHRNNDPLDAAIFYLAMKKKAVIWGLYRSQKDTK---MTQFFGHNFE 1671
Query: 1305 EEXXXXXXXXXXYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEK 1364
EE + LLG+ + E + AFFLLGG A+ VC L D+QLALVI RL E
Sbjct: 1672 EERWRKAALKNAFSLLGKQRFEHSAAFFLLGGCLKDAIEVCLEKLNDIQLALVIARLFES 1731
Query: 1365 H--GGPLERNLVTKFIL----P------SSIE-RGDYWLTSLLEWELGNYSQSFLTMLGF 1411
++++ K +L P SSI D +L S+ W L +YS + T++
Sbjct: 1732 EFDKSATYKSILRKKVLGIGSPASELSSSSINAHHDPFLRSMAHWILEDYSAALETLIKQ 1791
Query: 1412 QSTAVINNFALSS-NSVAF 1429
T + +S+ N + F
Sbjct: 1792 PVTEDEDQVMMSACNPIVF 1810
|
|
| UNIPROTKB|Q8TDJ6 DMXL2 "DmX-like protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 3.9e-47, Sum P(10) = 3.9e-47
Identities = 93/298 (31%), Positives = 146/298 (48%)
Query: 1134 LAGVTDAEKMEILAVVDLL----NEFDNKH--SASVYENLDEPGQRFWVEXXXXXXXXXX 1187
L G+T E+M ++A+ D + E D S S + LDE G R+ +
Sbjct: 1523 LPGLTRLEQMFLVALADTVATTSTELDESRDKSCSGRDTLDECGLRYLL-AMRLHTCLLT 1581
Query: 1188 XXGKLVSAEEL--AVDSRLIAWAFHSECQETLFG---SILPNEPTWPEMRALGVGFWYTD 1242
L + L V + AWAFHSE +E L +I +P W E+RA+G+G+W +
Sbjct: 1582 SLPPLYRVQLLHQGVSTCHFAWAFHSEAEEELINMIPAIQRGDPQWSELRAMGIGWWVRN 1641
Query: 1243 VTQLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRN 1302
+ LR +EK+A+ + + D D AL Y+++ + V+ GLF+ DEK + F S N
Sbjct: 1642 INTLRRCIEKVAKASFQRNNDALDAALFYLSMKKKAVVWGLFRSQHDEK---MTTFFSHN 1698
Query: 1303 FQEEXXXXXXXXXXYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLV 1362
F E+ + LLG+ + E + AFFLL G A+ VC + D+QLA+VI RL
Sbjct: 1699 FNEDRWRKAALKNAFSLLGKQRFEQSAAFFLLAGSLKDAIEVCLEKMEDIQLAMVIARLY 1758
Query: 1363 EKHGGPLER--NLVTKFILPS-------SIER--GDYWLTSLLEWELGNYSQSFLTML 1409
E +++ + IL S +R D +L SL W + +Y+++ T+L
Sbjct: 1759 ESEFETSSTYISILNQKILGCQKDGSGFSCKRLHPDPFLRSLAYWVMKDYTRALDTLL 1816
|
|
| FB|FBgn0023458 Rbcn-3A "Rabconnectin-3A" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 333 (122.3 bits), Expect = 2.2e-45, Sum P(12) = 2.2e-45
Identities = 85/267 (31%), Positives = 134/267 (50%)
Query: 1158 KHSASVYENLDEPGQRFWVEXXXXXXXXXXX-XGKLVSAEELAVDSRLIAWAFHSECQET 1216
K ++ ++LD+ G RF + + + V + I WAFHSE +E
Sbjct: 1872 KDGSTSTDSLDDCGLRFLLAMKHFTYLLRCLPLQQRAQFQRQGVGTSNIVWAFHSESEEE 1931
Query: 1217 LFGSILPN----EPTWPEMRALGVGFWYTDVTQLRTRMEKLARLQYLKKKDPKDCALLYI 1272
L +++P+ + W +R LGVG+W ++ LR +EKLA+ Y +K++P D A+ Y+
Sbjct: 1932 LL-NLIPSYTKGDLRWATLRDLGVGYWLKNINTLRRCVEKLAKCAYQQKQEPLDAAIYYL 1990
Query: 1273 ALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQEEXXXXXXXXXXYVLLGRHQLELAIAFF 1332
A+ + ++ GLF+ +DEK + F NF E+ +VLLG+ + E A+AFF
Sbjct: 1991 AMKKKSLVWGLFRSRRDEK---MTAFFGNNFAEDRWRKAALKNAFVLLGKQRFEHAVAFF 2047
Query: 1333 LLGGDAASAVTVCARNLGDVQLALVICRLVEKHG-GPLERNLVTKFILPSSIERG----- 1386
LL A+ VC L D QLAL+I RL E G G +L+ + IL + G
Sbjct: 2048 LLANSLNDAIEVCMNKLEDFQLALIIARLYEGDGEGCYYHHLLHEHILGTDAATGRCDLS 2107
Query: 1387 ----DYWLTSLLEWELGNYSQSFLTML 1409
D +L S+ W + Y +S T+L
Sbjct: 2108 RAHPDPFLRSMTYWTIKKYQESLNTLL 2134
|
|
| DICTYBASE|DDB_G0283535 DDB_G0283535 "DmX-like protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 379 (138.5 bits), Expect = 4.5e-44, Sum P(7) = 4.5e-44
Identities = 87/284 (30%), Positives = 141/284 (49%)
Query: 1126 ELLQNVYELAGVTDAEKMEILAVVDLLNEFDNKHSASVYENLDEPGQRFWVEXXXXXXXX 1185
E+L ++ +L ++ +E++++LAV D E LDE G RF +
Sbjct: 1379 EILSSI-KLGNLSSSEQIQLLAVTDTYGEIGEMRGG-----LDENGSRFILSAKVFQFLR 1432
Query: 1186 XXXXGKLVSAEELAVDSRLIAWAFHSECQETLFGSILPNEPTWPEMRALGVGFWYTDVTQ 1245
+ +++ + I WA HSE QET+ + P +P W ++ +G G W +
Sbjct: 1433 RSLPPQ---DRPISLSTTDILWALHSEAQETILSTCFPTDPDWDALKQIGAGLWIKSPST 1489
Query: 1246 LRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRNFQE 1305
L +EKLA+ Y++++DP++C+L Y+AL + L L K SKD K V FLS++F +
Sbjct: 1490 LINVVEKLAKTTYIQRRDPRECSLYYLALGKKGALVALHKASKDIKQ---VEFLSQDFTQ 1546
Query: 1306 EXXXXXXXXXXYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKH 1365
++L +H+ ELA + FLL G AV + + GD QLALVI RL E
Sbjct: 1547 AKWITAANKSAFLLQSKHKYELAASLFLLAGQLKKAVNLLLQMQGDFQLALVISRLYEGE 1606
Query: 1366 GGPLERNLVTKFILPSSIERGDYWLTSLLEWELGNYSQSFLTML 1409
G R ++ I+P + + D L S+ W L Y + ++
Sbjct: 1607 NGECSRMIIEDHIIPLAKKTNDRSLLSICNWLLKKYEDAITCLI 1650
|
|
| MGI|MGI:2444630 Dmxl2 "Dmx-like 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 319 (117.4 bits), Expect = 4.5e-44, Sum P(9) = 4.5e-44
Identities = 80/241 (33%), Positives = 121/241 (50%)
Query: 1134 LAGVTDAEKMEILAVVDLL----NEFDNKHSA--SVYENLDEPGQRFWVEXXXXXXXXXX 1187
L G+T E+M ++A+ D + E D S + LDE G R+ +
Sbjct: 1522 LPGLTRLEQMFLVALADTVATTSTELDENRDKNYSGRDTLDECGLRYLL-AMRLHTCLLT 1580
Query: 1188 XXGKLVSAEEL--AVDSRLIAWAFHSECQETLFG---SILPNEPTWPEMRALGVGFWYTD 1242
L + L V + AWAFHSE +E L +I +P W E+RA+G+G+W +
Sbjct: 1581 SLPPLYRVQLLHQGVSTCHFAWAFHSEAEEELINMIPAIQRGDPQWSELRAMGIGWWVRN 1640
Query: 1243 VTQLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRN 1302
V LR +EK+A+ + + + D AL Y+++ + V+ GLF+ DEK + F S N
Sbjct: 1641 VNTLRRCIEKVAKAAFQRNNEALDAALFYLSMKKKAVVWGLFRSQHDEK---MTTFFSHN 1697
Query: 1303 FQEEXXXXXXXXXXYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLV 1362
F E+ + LLG+ + E + AFFLL G A+ VC + D+QLA+VI RL
Sbjct: 1698 FNEDRWRKAALKNAFSLLGKQRFEQSAAFFLLAGSLKDAIEVCLEKMEDIQLAMVIARLF 1757
Query: 1363 E 1363
E
Sbjct: 1758 E 1758
|
|
| RGD|1586163 Dmxl2 "Dmx-like 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 323 (118.8 bits), Expect = 7.9e-39, Sum P(8) = 7.9e-39
Identities = 81/241 (33%), Positives = 121/241 (50%)
Query: 1134 LAGVTDAEKMEILAVVDLL----NEFDNKHSA--SVYENLDEPGQRFWVEXXXXXXXXXX 1187
L G+T E+M ++A+ D + E D S + LDE G R+ +
Sbjct: 1523 LPGLTRLEQMFLVALADTVATTSTELDENRDKNYSGRDTLDECGLRYLL-AMRLHTCLLT 1581
Query: 1188 XXGKLVSAEEL--AVDSRLIAWAFHSECQETLFG---SILPNEPTWPEMRALGVGFWYTD 1242
L + L V + AWAFHSE +E L +I +P W E+RA+G+G+W +
Sbjct: 1582 SLPPLYRVQLLHQGVSTCHFAWAFHSEAEEELINMIPAIQRGDPQWSELRAMGIGWWVRN 1641
Query: 1243 VTQLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVGFLSRN 1302
V LR +EK+A+ + + D D AL Y+++ + V+ GLF+ DEK + F S N
Sbjct: 1642 VNTLRRCIEKVAKAAFQRNNDALDAALFYLSMKKKAVVWGLFRSQHDEK---MTTFFSHN 1698
Query: 1303 FQEEXXXXXXXXXXYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLV 1362
F E+ + LLG+ + E + AFFLL G A+ VC + D+QLA+VI RL
Sbjct: 1699 FNEDRWRKAALKNAFSLLGKQRFEQSAAFFLLAGSLKDAIEVCLEKMEDIQLAMVIARLF 1758
Query: 1363 E 1363
E
Sbjct: 1759 E 1759
|
|
| SGD|S000003794 RAV1 "Subunit of the RAVE complex" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 299 (110.3 bits), Expect = 3.8e-27, Sum P(3) = 3.8e-27
Identities = 81/284 (28%), Positives = 137/284 (48%)
Query: 1203 RLIAWAFHSECQETLFGSILPNEPTWPEMRALGVGFWYTDVTQLRTRMEKLARLQYLK-- 1260
R ++WA HS+ +E L SI + +W R + +W + L + E +A+ ++ K
Sbjct: 904 RDVSWALHSDNKEILLSSIDRHITSWNRAREYRIAYWIKE-QDLVKKFEDIAKYEFSKDD 962
Query: 1261 KKDPKDCALLYIALNRIQVLAGLFK--ISKDEKDKPLVGFLSRNFQEEXXXXXXXXXXYV 1318
K+DP CA+ Y+AL + Q+L L+K I E+ K +V F+S +F +V
Sbjct: 963 KRDPSRCAIFYLALKKKQILLSLWKMAIGHPEQQK-MVRFISNDFTVPRWRTAALKNAFV 1021
Query: 1319 LLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHGGPLERNLVTKFI 1378
LL +H+ A FFLL V V + + D+ LA+ +CR+ E GP+ L+T +
Sbjct: 1022 LLSKHRYMDAAVFFLLTDSLKDCVNVLCKQVHDMDLAIGVCRVYEGDNGPVLGELLTAQM 1081
Query: 1379 LPSSIERGDYWLTSLLEWELGNYSQSFLTMLGF-----QSTAVINNFALSSNSVAFMDPS 1433
LP +I+ D W S + W+L + +L ++++++ + S DP+
Sbjct: 1082 LPETIKENDRWKASFIYWKLRKQEVAIKALLTAPIDLENNSSIVDKEVCVNRSFLVEDPA 1141
Query: 1434 IGLYCLM-LANKNSMRNAIGEKNAAILGRWAALMRAT-ALNRCG 1475
+ LY L N+N ++ IG N ++R T L R G
Sbjct: 1142 L-LYLYNHLRNRN-LKYFIGSLNVEAKIECTLILRVTDILCRMG 1183
|
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| ASPGD|ASPL0000051923 AN0703 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 320 (117.7 bits), Expect = 2.1e-25, Sum P(4) = 2.1e-25
Identities = 82/299 (27%), Positives = 144/299 (48%)
Query: 1200 VDSRLIAWAFHSECQETLFGSI---LPNEPTWPEMRALGVGFWYTDVTQLRTRMEKLARL 1256
V R I WAFHS Q+ L + + +W R G+ W ++ +R ++E +AR
Sbjct: 994 VSWREIVWAFHSGSQDILIDLVSRQFGGKLSWKAARESGIFMWLSNSATIREQLEVVARN 1053
Query: 1257 QYLK--KKDPKDCALLYIALNRIQVLAGLFKISKDEKDKPLVG-FLSRNFQEEXXXXXXX 1313
+Y K +++P DC+L Y+AL + +L GL++++ +++ L+ +F+E
Sbjct: 1054 EYTKTEERNPIDCSLYYLALRKKNILQGLWRMAHWNREQSATQKLLANDFRESRWQTAAL 1113
Query: 1314 XXXYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHGGPLERNL 1373
Y LLGR + E A AFFLL AV VC +GD+QLA+ I R E GP+ + +
Sbjct: 1114 KNAYALLGRRRFEYAAAFFLLADHLRDAVQVCLNQVGDLQLAIAIARAYEGDNGPVLKEI 1173
Query: 1374 VTKFILPSSIERGDYWLTSLLEWELGNYSQSFLTMLGFQSTAVINN---------FALSS 1424
+ +LP + G+ W+ S W LG + +++ + + ++ +L +
Sbjct: 1174 LETRVLPEAAMDGNRWMASWAFWMLGRRDMAVRSLISPVESLIPSDPASPETPGSISLQA 1233
Query: 1425 NSVAFMDPSIGLYCLMLANKNSMRNAIGEKNAAILGRWAALMRATAL-NRCGLPLEALD 1482
S DP++ + L + +++ G + W ++R L +R G L ALD
Sbjct: 1234 KSYLSNDPALVVLYKQL-REMTLQTLKGASKVSAQAEWEFVLRNARLYDRMGCDLLALD 1291
|
|
| POMBASE|SPBC1105.10 rav1 "RAVE complex subunit Rav1" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 248 (92.4 bits), Expect = 2.9e-15, Sum P(3) = 2.9e-15
Identities = 58/200 (29%), Positives = 103/200 (51%)
Query: 1199 AVDSRLIAWAFHSECQETLFGSI--LPNEPT-WPEMRALGVGFWYTDVTQLRTRMEKLAR 1255
++ +R +AWAFHS + L L +P W + + FW + L+ +L+R
Sbjct: 924 SLPTREMAWAFHSSNKAVLLDHTKKLHGKPLLWNAVEEYAIPFWLNEQL-LKDVFLELSR 982
Query: 1256 LQY--LKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDKP-LVGFLSRNFQEEXXXXXX 1312
Y + ++P++ +L +IAL++I V L++++ K+ V LS +F ++
Sbjct: 983 NHYAEIDDRNPENVSLYHIALHKINVFRDLWRLASWHKESARTVKLLSNDFSKKKWKVVA 1042
Query: 1313 XXXXYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHGGPLERN 1372
+ LL +H+ A AFFLL A VC RNL + LA+ + R+ E GP +
Sbjct: 1043 SKNAFALLSKHRYFYASAFFLLADSCYDAAKVCIRNLKSISLAIAMTRVYEGDDGPTLKR 1102
Query: 1373 LVTKFILPSSIERGDYWLTS 1392
L+ +++LP ++ + D WLT+
Sbjct: 1103 LINEYVLPLAVSQNDRWLTN 1122
|
|
| CGD|CAL0004435 orf19.5395 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 163 (62.4 bits), Expect = 2.9e-05, Sum P(3) = 2.9e-05
Identities = 56/231 (24%), Positives = 99/231 (42%)
Query: 1125 VELLQNVYELAGVTDAEKMEILAVVDLLNEFDNKHSASVYENLDEPGQRFWVEXXXXXXX 1184
+E L + L +T ++ +++ + ++ +F + + LD G R+ +
Sbjct: 940 IERLMKI-SLPLLTRHQQSTLISTIVIVKDF----TKDMLVELDPNGIRYLISLKLSSTA 994
Query: 1185 XXXXXGKLVSAEELAVDSRLIAWAFHSECQETLFGSILPN---EPTWPEMRALGVGFWYT 1241
+ + LA I WA + + L + + + W EM+ G+ FW
Sbjct: 995 TATSTSSATTKKRLAQ----IQWAMMCKTPDILLEHVTKHYGGKIKWKEMKDSGMPFW-V 1049
Query: 1242 DVTQLRTRMEKLARLQYLKKKDPKDCALLYIALNRIQVLAGLFKISKDEKDK-PLVGFLS 1300
+ EK+A L++ + C L Y++L + +L L K KD+K+K ++GF+
Sbjct: 1050 EKNSFTKLFEKMAALEFKDAPLGRIC-LYYLSLKKKDILIRLIK-HKDDKEKNKIIGFMQ 1107
Query: 1301 RNFQEEXXXXXXXXXXYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGD 1351
++F + YVLLG H+ A FFLL A A C R L D
Sbjct: 1108 KDFTQASNRSSALKNAYVLLGLHRYLDAAYFFLL----ADAPKDCCRILAD 1154
|
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00008635001 | SubName- Full=Chromosome undetermined scaffold_203, whole genome shotgun sequence; (2488 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2548 | |||
| pfam12234 | 629 | pfam12234, Rav1p_C, RAVE protein 1 C terminal | 2e-57 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-10 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-10 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-05 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-05 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 6e-04 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 0.001 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 0.002 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 0.003 |
| >gnl|CDD|221476 pfam12234, Rav1p_C, RAVE protein 1 C terminal | Back alignment and domain information |
|---|
Score = 211 bits (539), Expect = 2e-57
Identities = 124/443 (27%), Positives = 207/443 (46%), Gaps = 59/443 (13%)
Query: 979 MKNDHLV--ASDQL----KC------GGAILGSWSMLEIAEKLRGSLPVYHPKALFLNIY 1026
+K+ +LV + +QL K G L + + + +L G LPVYHP+ L I
Sbjct: 137 LKDGNLVVASGNQLFIYDKELDLSLSSGLRLSNNDLFHLVSRLNGPLPVYHPQFLIQCIL 196
Query: 1027 SGNWKRAYVSVRHLVENLPSNYPSEKRYCYTKSSHIVPQIL---LSTYFEGLLSKGSTDN 1083
+G +LV+ + N R+ + L + + +
Sbjct: 197 AGK--------LNLVKEILLNLFKALRFYNEGEISDLDSTLKIPPEKFLDTD------TD 242
Query: 1084 GFQWSGLNTFSTSLQFRQFAYNMDLDASNSSSSTKSELSGFV-ELLQNVYELAGVTDAEK 1142
G+ + N+ Y ++S F+ E L + L +T ++
Sbjct: 243 GYIVAATNSSIDHKTVPDEPY----------PKFNEDVSAFLREKLTKI-VLPYLTRHQQ 291
Query: 1143 MEILAVVDLLNEFDNKHSASVYENLDEPGQRFWVELRFQLLCFFRRFGKLVSAEELAVDS 1202
+ ++ +++ + E + + +D+ G RF LL + + F +AE+ +V
Sbjct: 292 ITLMDIIECVGEVEKNRRS-----VDDNGLRF-------LLGYRQHFSHKPTAEQKSVTW 339
Query: 1203 RLIAWAFHSECQETLFGSI-LPNEPTWPEMRALGVGFWYTDVTQLRTRMEKLARLQYLK- 1260
R I+WA HS+ QE L + + +W E R GV +W D LR + E +AR ++ K
Sbjct: 340 RDISWALHSDNQEILLSFVSRQIQMSWEEARESGVFYWAKDAEALRNQFEVVARNEFTKD 399
Query: 1261 -KKDPKDCALLYIALNRIQVLAGLFKIS--KDEKDKPLVGFLSRNFQEEKNKAAALKNAY 1317
+DP DCAL Y+AL + QVL GL++++ E+ K ++ FL+ +F E + K AALKNAY
Sbjct: 400 DTRDPSDCALFYLALKKKQVLQGLWRMASWHPEQGK-MLKFLANDFNEPRWKTAALKNAY 458
Query: 1318 VLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHGGPLERNLVTKF 1377
LL +H+ E A +FFLL AV V R L D+QLA+ +CR+ E G + ++ +
Sbjct: 459 ALLSKHRYEYAASFFLLADSLKDAVNVLLRQLDDLQLAIAVCRVYEGDDGGPLKEILKEE 518
Query: 1378 ILPSSIERGDYWLTSLLEWELGN 1400
+LP + + GD W+ S W L
Sbjct: 519 VLPEAAKEGDRWMASWAFWMLNR 541
|
This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. Length = 629 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 2e-10
Identities = 57/332 (17%), Positives = 106/332 (31%), Gaps = 73/332 (21%)
Query: 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY 2282
+ P GS + I +W+ + T + +
Sbjct: 13 TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG----------HTGPVRDVAASAD 62
Query: 2283 GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYI--TSSGSVIAAAGHS 2340
G AS + D T+ W LE G + H VS + + G +++++
Sbjct: 63 GTYLASGSSDKTIRLWDLETGECVRT--------LTGHTSYVSSVAFSPDGRILSSSSRD 114
Query: 2341 SNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIH 2400
+ VWD ++ H S++ + + + G + +
Sbjct: 115 KT---IKVWDV--ETGKCLTTLRGHTDWVNSVAF-------SPDGTFVASSSQDGTIKLW 162
Query: 2401 DFRYIATGKTKK--HKHSDRGGSSINTCA-HADAQT-GSGSKPGDQNGMLW--------Y 2448
D R TGK H+ +N+ A D + S S D LW
Sbjct: 163 DLR---TGKCVATLTGHTG----EVNSVAFSPDGEKLLSSS--SDGTIKLWDLSTGKCLG 213
Query: 2449 IPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRG 2508
+ H V ++ P+ L +GS+DG +++WD + + V T ++
Sbjct: 214 TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV---------QTLSGHTNS- 263
Query: 2509 FGGVVRAGVTDIQVVSRG--FLSCGGDGSVKL 2538
VT + G S DG++++
Sbjct: 264 --------VTSLAWSPDGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 8e-10
Identities = 58/289 (20%), Positives = 99/289 (34%), Gaps = 61/289 (21%)
Query: 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSS- 2330
++ + F G A+ + DGT+ W LE G E H V + +S
Sbjct: 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETG--------ELLRTLKGHTGPVRDVAASA 61
Query: 2331 -GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIV 2389
G+ +A+ SS+ + +WD +T H S++ F D ++
Sbjct: 62 DGTYLASG--SSDKT-IRLWDLETGECVRT--LTGHTSYVSSVA-FSPD------GRILS 109
Query: 2390 TGGKGGDVGIHDFRYIATGKTKK--HKHSDRGGSSINTCA-HADAQTGSGSKPGDQNGML 2446
+ + + + D TGK H+D +N+ A D + S D L
Sbjct: 110 SSSRDKTIKVWDVE---TGKCLTTLRGHTD----WVNSVAFSPDGTFVASSS-QDGTIKL 161
Query: 2447 WYIP--------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHER 2498
W + H G V ++ P+ L+ S DG +KLWD + +
Sbjct: 162 WDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL----GTLRG 217
Query: 2499 HTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545
H GV + G S DG++++ L +
Sbjct: 218 HE--------------NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE 252
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-05
Identities = 56/295 (18%), Positives = 100/295 (33%), Gaps = 56/295 (18%)
Query: 2201 WETQDDFEDYVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVL 2260
ET + V +++ A + GSS+ I LW+ + T
Sbjct: 38 LETGELLRTLKGHTGPVRDVAASADG-----TYLASGSSDKTIRLWDLETGECVRTLTG- 91
Query: 2261 PAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSH 2320
+ +S++ F G +S++ D T+ W +E G + H
Sbjct: 92 ---------HTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG--------KCLTTLRGH 134
Query: 2321 AMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLG 2380
V+ + S A S +G + +WD A++T H G S++ +
Sbjct: 135 TDWVNSVAFSPDGTFVASSSQDG-TIKLWDLRTG--KCVATLTGHTGEVNSVAFSPD--- 188
Query: 2381 SGSVSPLIVTGGKGGDVGIHDFRYIATGKT-KKHK--------HSDR----GGSSINTCA 2427
+++ G + + D T + H+ D GS T
Sbjct: 189 ----GEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIR 244
Query: 2428 HADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWD 2482
D +TG + L H SVT ++ P+ +GS DG +++WD
Sbjct: 245 VWDLRTGECVQ------TL----SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.7 bits (117), Expect = 2e-05
Identities = 58/275 (21%), Positives = 102/275 (37%), Gaps = 38/275 (13%)
Query: 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL 2291
L GSS+ I LW+ + + + +++ ++ D AS++L
Sbjct: 78 ELLLSGSSDGTIKLWDLDNGEKL-----IKSLEGLHDSSVSKLALSSPDGNSILLASSSL 132
Query: 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSS--GSVIAAAGHSSNGINVVVW 2349
DGTV W L P + H+ V+ + S G ++A+ + +W
Sbjct: 133 DGTVKLWDLS-------TPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDG--TIKLW 183
Query: 2350 DTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGK 2409
D +++ H S++ S LI +G G + + D TGK
Sbjct: 184 DL--RTGKPLSTLAGHTDPVSSLAF------SPDGGLLIASGSSDGTIRLWDLS---TGK 232
Query: 2410 TKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLW---------YIPKAHLGSVTRI 2460
+ S S +++ + + SGS D LW H SV +
Sbjct: 233 LLRSTLSGHSDSVVSSFSPDGSLLASGSS--DGTIRLWDLRSSSSLLRTLSGHSSSVLSV 290
Query: 2461 STVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKL 2495
+ P+ L +GS DG V+LWD + +L+ +
Sbjct: 291 AFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLK 325
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.3 bits (116), Expect = 2e-05
Identities = 51/217 (23%), Positives = 80/217 (36%), Gaps = 34/217 (15%)
Query: 2279 FDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCL-CFSSHAMDVSYITSS--GSVIA 2335
F G AS + DGT+ W ++R S L S H+ V + S G ++A
Sbjct: 249 FSPDGSLLASGSSDGTIRLW--------DLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLA 300
Query: 2336 AAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGG 2395
+ V +WD S ++ HEG S+S + S L+ G G
Sbjct: 301 SGSSDGT---VRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDG------SLLVSGGSDDG 351
Query: 2396 DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP----- 2450
+ + D R T K + G S++ + + + S D LW +
Sbjct: 352 TIRLWDLR------TGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLL 405
Query: 2451 ---KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK 2484
H VT + P+ +GS D ++LWD K
Sbjct: 406 RNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLK 442
|
Length = 466 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 3e-04
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWD 2482
K H G VT ++ P+ +L +GS DG V++WD
Sbjct: 8 KGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 6e-04
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWD 2482
K H G VT ++ P+ +GS DG +KLWD
Sbjct: 9 KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.5 bits (101), Expect = 0.001
Identities = 63/296 (21%), Positives = 98/296 (33%), Gaps = 40/296 (13%)
Query: 2223 RAFSSHPLRPFFLVGSSNTH-IYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH 2281
+ + P GSS I LW+ K +T +S+L F
Sbjct: 159 TSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG----------HTDPVSSLAFSP 208
Query: 2282 YG-HRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHS 2340
G AS + DGT+ W L G S H+ V S + A+G S
Sbjct: 209 DGGLLIASGSSDGTIRLWDLSTGKLLRS-------TLSGHSDSVVSSFSPDGSLLASGSS 261
Query: 2341 SNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIH 2400
+ +WD L +S +++ H S++ L+ +G G V +
Sbjct: 262 DG--TIRLWD-LRSSSSLLRTLSGHSSSVLSVAF-------SPDGKLLASGSSDGTVRLW 311
Query: 2401 DFRYIATGKTKKHKHSDRGGSSINTCA-HADAQTGSGSKPGDQNGMLWYIPKA------- 2452
D TGK +++ + D D LW +
Sbjct: 312 DLE---TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368
Query: 2453 HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRG 2508
+V +S P+ + +GS DG V+LWD L+ + R T L S G
Sbjct: 369 GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDG 424
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.002
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 20/90 (22%)
Query: 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFG 2510
K H G VT ++ P+ L TGS DG +K+WD + +L+ K H
Sbjct: 6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT-LKGHT------------- 51
Query: 2511 GVVRAGVTDIQVVSRG--FLSCGGDGSVKL 2538
V D+ + G S D +++L
Sbjct: 52 ----GPVRDVAASADGTYLASGSSDKTIRL 77
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.4 bits (98), Expect = 0.003
Identities = 48/235 (20%), Positives = 84/235 (35%), Gaps = 25/235 (10%)
Query: 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAM-DVSYITSS 2330
SI+++ F G S + DGT+ W L + + ++S ++ ++ +
Sbjct: 66 DSITSIAFSPDGELLLSGSSDGTIKLWDL----DNGEKLIKSLEGLHDSSVSKLALSSPD 121
Query: 2331 GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVT 2390
G+ I A S +G V +WD L+ P ++ H S++ + ++
Sbjct: 122 GNSILLASSSLDG-TVKLWD-LSTPGKLIRTLEGHSESVTSLAFSPDG--------KLLA 171
Query: 2391 GGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP 2450
G D I + SS+ SGS D LW +
Sbjct: 172 SGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSS--DGTIRLWDLS 229
Query: 2451 KAHLGSVTR--------ISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHE 2497
L T S P+ SL +GS DG ++LWD +++ + H
Sbjct: 230 TGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS 284
|
Length = 466 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2548 | |||
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 100.0 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 100.0 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 99.97 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.96 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.94 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.94 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.93 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.93 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.93 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.92 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.92 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.92 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.92 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.91 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.91 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.91 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.91 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.91 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.91 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.91 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.91 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.91 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.9 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.9 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.9 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.9 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.89 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.89 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.89 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.88 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.88 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.87 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.87 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.87 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.87 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.86 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.86 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.86 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.85 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.85 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.84 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.84 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.84 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.84 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.84 | |
| PTZ00421 | 493 | coronin; Provisional | 99.84 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.84 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.84 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.83 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.83 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.82 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.82 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.82 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.82 | |
| PTZ00420 | 568 | coronin; Provisional | 99.81 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.81 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.8 | |
| PTZ00421 | 493 | coronin; Provisional | 99.8 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.8 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.8 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.8 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.8 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.79 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.78 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.78 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.77 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.76 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.76 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.76 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.75 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.74 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.74 | |
| PTZ00420 | 568 | coronin; Provisional | 99.74 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.73 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.73 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.73 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.73 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.73 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.72 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.72 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.72 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.71 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.71 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.71 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.71 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.71 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.7 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.7 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.7 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.69 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.69 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.68 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.68 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.68 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.68 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.67 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.67 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.67 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.67 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.66 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.66 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.66 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.65 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.65 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.65 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.65 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.64 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.64 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.64 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.63 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.63 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.63 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.62 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.62 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.61 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.61 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.6 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.6 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.59 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.57 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.57 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.57 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.57 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.55 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.55 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.54 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.54 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.53 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.53 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.53 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.53 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.52 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.52 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.51 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.49 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.48 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.47 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.47 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.47 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.46 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.46 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.46 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.45 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.44 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.44 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.44 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.43 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.43 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.42 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.41 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.4 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.37 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.35 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.34 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.34 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.34 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.33 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.33 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.32 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.32 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.31 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.3 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.3 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.3 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.29 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.27 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.27 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.25 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.24 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.24 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.24 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.23 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.22 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.21 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.21 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.19 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.19 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.17 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.15 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.13 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.12 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.1 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.1 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.09 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.09 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.08 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.07 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.05 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.04 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.04 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.04 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.01 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.0 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.0 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.0 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.98 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.94 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.94 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.93 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.91 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 98.88 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 98.81 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 98.8 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.76 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.75 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.75 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.74 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.74 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 98.74 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.74 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 98.73 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 98.72 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 98.7 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.69 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.68 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.67 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.66 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.64 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.64 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.63 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.63 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.62 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.59 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.57 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.56 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.54 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 98.51 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.49 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.46 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.42 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.38 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.37 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.33 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.29 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.29 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.28 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.27 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.27 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.26 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.24 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.21 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.19 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.17 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.15 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.15 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.13 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.1 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.1 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.07 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.05 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.01 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.01 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.0 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.98 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 97.98 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.95 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.95 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.93 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.93 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 97.89 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.87 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.86 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.81 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.8 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.8 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 97.77 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.74 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.72 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 97.7 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.65 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.65 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 97.57 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.54 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.48 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.44 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 97.4 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.39 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 97.38 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.37 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 97.31 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.25 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.2 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.2 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.2 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.18 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.18 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.18 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.17 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.14 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.1 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.06 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.05 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 96.95 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 96.92 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 96.89 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 96.83 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.81 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.8 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 96.78 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 96.73 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 96.69 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 96.58 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 96.3 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 96.29 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.19 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 96.12 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 96.12 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 95.96 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.8 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 95.67 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 95.57 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.56 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 95.55 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 95.48 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 95.48 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 95.26 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.2 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.75 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 94.57 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 94.53 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.49 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 94.16 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 94.03 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 93.87 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 93.68 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 93.54 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 93.38 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 93.31 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 93.28 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 93.28 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 93.08 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 92.98 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 92.4 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 92.21 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 92.12 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 92.11 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 90.91 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 90.68 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 90.41 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 90.14 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 90.1 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 89.72 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 89.69 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 89.27 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 89.2 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 88.78 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 88.36 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 87.57 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 87.5 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 87.47 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 87.18 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 86.97 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 86.85 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 86.27 | |
| PRK10115 | 686 | protease 2; Provisional | 85.52 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 85.14 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 84.84 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 84.49 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 84.29 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 81.44 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 81.33 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 81.26 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 81.22 |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=3318.52 Aligned_cols=2126 Identities=25% Similarity=0.358 Sum_probs=1704.0
Q ss_pred CcCCCCCCCCCCccccccCCCCceEEEEeccceEEEEeCCCCCCcccccccccceeeeccCCC-CcceeEEeecCCCCcc
Q 000054 31 EFIPTAPTRSTSTIDWLPDFAGYSWVAYGASSLLVISHFPSPLSQEEALIGPIFRQVFALSDN-SLPVTSISWSPETPSI 109 (2548)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~ay~~~~~~vi~~~~s~~~~~~~~~~~~~~q~~~~~~~-~~~V~~v~~s~~~~~~ 109 (2548)
-++|.||-+-....+ .-.++|+||+|||+||+|||+. + +|||+ |+||++++ +++|+||+||+++
T Consensus 5 QvlpGa~n~g~~~y~-~gsi~~~pftay~sg~~vvIl~--n---~ferv------QiIp~~~~g~~~vsav~c~~~t--- 69 (2439)
T KOG1064|consen 5 QVLPGAPNAGDNCYS-VGSIGDLPFTAYASGCDVVILT--N---DFERV------QIIPGAKHGNILVSAVDCSQQT--- 69 (2439)
T ss_pred cccCCCCCCCCCCce-eceECCeeEEEeecCCceEEEc--C---CceeE------EeccccCcCceEEEEEeecccc---
Confidence 357788877666554 4578999999999999999999 7 99999 99999996 6999999999999
Q ss_pred cceeeecCCeEEEEecC-----CCCCCCceeEEEEEEEEecceEEEeeecCCCCeeEEecceEEeeccCC----------
Q 000054 110 GQLAAASENCIFVFAHD-----SASSKGSFCWSQNAILVQGTKVEAIEWTGSGDGIVAGGMETVLWKKKN---------- 174 (2548)
Q Consensus 110 G~iAa~~~n~v~if~~~-----~~~~~~~~~W~~~~~~~~~~~v~~l~W~~~G~~ll~~g~~~~lw~~~~---------- 174 (2548)
|+|||+|||.||||.|. +.+.+..|||+|++||++++.|.++.|+++|.|||+||+.+|||+++.
T Consensus 70 G~IA~sygn~v~I~eP~~i~s~k~n~~~~~~W~~t~qf~~~~~~~s~~w~~~~~rlltgs~~l~Lwq~~~~~~~~~~~~i 149 (2439)
T KOG1064|consen 70 GKIAASYGNVVSIFEPTNILSSKGNPHLAVQWVQTTQFFHDSTVVSLNWNFEGLRLLTGSDNLQLWQETINFSIEEPEEI 149 (2439)
T ss_pred ceeeeccCCeeeecCCcchhhhcCCcceeeeEEeeecccccccceeeeeccccchhhhcCcceEEEeccCCccccccccc
Confidence 99999999999999884 444556889999999999999999999999999999999999998663
Q ss_pred --------CcceEEEEecCCCCceeeeeeeccCCceeeeccccccccCCCCCCCceeeEeecCCcceeEEEEeecCCcce
Q 000054 175 --------TLWEIAWKFKENYPQNLVSATWSIEGPSATAASMSQLDLLGPKEAGKCVFICCSDGKSEYIKLELCHPQPVS 246 (2548)
Q Consensus 175 --------~~W~~~W~~~~~~~~~l~~~~~spdg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~HP~~V~ 246 (2548)
.+|||||+||++.|+++ |+|||||+||||+|+.++...-= . ...+-+..++.+|+|+||+|||||+
T Consensus 150 ~d~~l~~~~~We~iW~~k~~~~v~~--~~~SpDG~f~at~g~~dclaKvw-y---~~~~~~~~~~~~f~~vyL~HP~~Vs 223 (2439)
T KOG1064|consen 150 TDTVLPKRRDWELIWSCKTPSPVYS--STISPDGEFFATIGKRDCLAKVW-Y---KSTVSQSGGEESFSFVYLPHPRRVS 223 (2439)
T ss_pred ccccccccccceEEEeccCCcceeE--EEEcCCcceEEeccccCcchhhh-c---ccccccccCccceeeEeccCCcccc
Confidence 49999999999999888 99999999999999855221100 0 0112235689999999999999999
Q ss_pred eeecccCCcccCCCCCccccceeEeeeecCCeEEEEEeecCCccccccccc------CCCCccceeEEEEEEEecccccc
Q 000054 247 MVQWRPSTRRHSPGDTKRSQRHVLLTCCLDGTVRLWCEMDSGKTRKVAKDT------NDHKTIRRSFCVGAIIEINQALN 320 (2548)
Q Consensus 247 ~~~Wr~~~r~~s~~~~~~~v~nvLlT~c~D~~~RlW~E~~~~~~~k~~~~~------~~~~~~~~~f~~~a~i~~~~~~~ 320 (2548)
||+| ||++||||||+|||||||||+||+||||+||+.+|.++.++.. .-|.++.+|||+||.|| + .|
T Consensus 224 ~~~W----Rktskymp~gsv~nvL~T~C~D~v~RIW~et~~p~~~l~~~~~~~~~~~~~~~sa~~~f~~aadin--~-~t 296 (2439)
T KOG1064|consen 224 GFQW----RKTSKYMPRGSVSNVLMTCCLDNVCRIWCETDLPKDCLVMLTGFDHKMKSFHVSALCHFHIAADIN--P-AT 296 (2439)
T ss_pred ccee----ccccccCCccchhhhHHhhhccCceEEEEEeccCCCeEeeeccccccccccccCCCcceEEEeecC--c-cc
Confidence 9999 8999999999999999999999999999999999998865554 23667899999999999 7 77
Q ss_pred CCCCCCeEEEeecccceEE--eccCCccceeccccccCCceeeeeeEEeecCCccceeeeeeecccCCCCccCeEEEeee
Q 000054 321 GALGMDIVITWAKEIRCMF--ETGEGANHFISTGVYEHGGTGKCEWLVGYGPGSLVTLWAIHCLDDISPLRFPRVTLWKK 398 (2548)
Q Consensus 321 ~~l~~~~~v~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ew~~~~~pg~~~~~w~v~~ldd~~~~r~~~v~~~~~ 398 (2548)
| +|+| |+||||+|| -+-|...+.+++.+++...++.|||+.|..||..++.|||||||||+||||||||||+|
T Consensus 297 D----~F~v-Wlnnke~~F~~~t~e~se~~~s~d~~~e~~vg~~~r~~G~ss~~~l~~W~V~~LDd~~pfRq~~vS~~sr 371 (2439)
T KOG1064|consen 297 D----PFVV-WLNNKELHFLTLTHENSEQDFSMDDEDEEIVGDGERLGGLSSGNPLNNWHVEWLDDYSPFRQPQVSFSSR 371 (2439)
T ss_pred C----ceeE-EEecccceeEEEeecCcccccccccccccccccccccccccCCCcccchhhhhccccCccccceeeeccc
Confidence 7 7888 999999999 44444455678888888889999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCcCCcccceeEEeeccc-----------CCCCcccccccccccCceeeeeccccCCCCccccccC
Q 000054 399 QNLELEHPHNSGFSGFQGQSLLNKVVISRDCV-----------SGLPTICSLVHLSHCNSLVWSLLHAQRSGDVEDVSSD 467 (2548)
Q Consensus 399 ~~~~~~~~~~~~f~~~~d~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~n~~~~~~~~~~~s~~~~~~s~~ 467 (2548)
+|. +||+ +|+.+|++.++|..+. .-+..+|+++.... |+++|+++|.||++| +++|+
T Consensus 372 ip~--------a~p~-~da~SLss~~~~~~~~~~~k~aiq~~~~~~~s~~ss~~Hs~-~tv~~is~H~ngsln--~~~fs 439 (2439)
T KOG1064|consen 372 IPS--------AFPT-GDAMSLSSATMLNDCTPLYKDAIQPDNLYPGSILSSSYHSK-PTVMMISKHTNGSLN--SVSFS 439 (2439)
T ss_pred ccc--------cccc-cchhhhhhhhcccCCcccchhhhccCCcCCCccccccccCC-CceEEEEeecccccc--ceecc
Confidence 999 9999 9999999999995322 22224788888877 999999999999999 89999
Q ss_pred CCC-CceeeeecccceeeeccccccEeEEEeeccccchhhhhcc-CCC------ccEEEEEecccccccCCCCCCCCccc
Q 000054 468 KSS-TGQILSCSASRILSIEGHTGKILQVAVHPCVSEFELAVSL-DSN------GLLLFWSLSTISNCISDLPTLMPSWK 539 (2548)
Q Consensus 468 ~~~-~~~~~~~~~~~~~~~~gh~~~i~~v~~hp~~~~~~l~~s~-d~~------~~li~w~~~~~~~~~~~~~~~~p~~~ 539 (2548)
+.+ |++++++ +|++|+|||||+|+||++||++ |++||||+ +++ +|||+|+|+|| || +|
T Consensus 440 ~~ssft~vls~--~h~~r~~GHrf~i~~la~hsvl-pllltTS~~~~~~~~~i~Se~ilwrv~~v----------gP-ls 505 (2439)
T KOG1064|consen 440 LKSSFTTVLSI--GHVSRFCGHRFHINDLACHSVL-PLLLTTSHHNSNDPIAICSELILWRVDPV----------GP-LS 505 (2439)
T ss_pred cccchhheeee--eeEEEeecCCcchhhhccCCCc-cceeeecccccCCccceeeeeeEeeccCC----------cc-ee
Confidence 988 9999999 9999999999999999999999 88888887 434 89999999999 99 99
Q ss_pred cccC---ccccccc--CCcceeeeeccccccceEEEEeecCCeeEEEEeccccCCCCeEEeeeEEEeccCCCCCCCCCce
Q 000054 540 LCGK---LRTRKSC--SNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVCHYVCTIPFTGHGHYEDGPAN 614 (2548)
Q Consensus 540 ~~g~---l~~~~~~--~~~t~~~w~p~~l~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~~~c~i~~~~~~~~~~~~~~ 614 (2548)
+.|| ++|+++. ++|++|+|+|++||++|...+ |.|+.+||++.-++... +--+..|.|||+....... .+
T Consensus 506 ~~ggVselar~Ns~~~s~fs~v~w~ptllps~~lg~~-~ns~sacFvA~dg~~~r--~yqavida~~ll~e~s~~e--~S 580 (2439)
T KOG1064|consen 506 FNGGVSELARINSLHISAFSNVAWLPTLLPSYCLGTY-CNSPSACFVASDGGNLR--KYQAVIDAIPLLVELSLPE--TS 580 (2439)
T ss_pred eccCcchhhhccchhhhhhceeeecccccccceeeee-ccCCcceeEEecCCcch--hhhhhhhcchhhhcCCchh--Hh
Confidence 9999 9999998 999999999999999998777 88888888888876655 6778899999987633222 78
Q ss_pred eeeecCCcccCcccccceEEEEEEeccccceeEEEEEEeeecCCccccCCC-CCCCccccccCCcccccccceeeeeec-
Q 000054 615 IFSVPLPSCNDKTVMYNKFMLLGVWLKGLESLSWEITFHSFDLSESCCGCI-DDNNTVKCSMCKFETTFCGKKYFIGVN- 692 (2548)
Q Consensus 615 ~~~~~~~~~~~~~f~~~~f~~v~~~~~~~~~l~w~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~- 692 (2548)
+++-|.-.+|+++|+-+++.++-+|+.+|....|+.+||.|+....+|+|+ .+.+......+-|+..|.++.++..++
T Consensus 581 ~~i~~~~n~vsqqsta~Pgcil~l~~i~~~~~~ns~~lhvFq~~~i~~~~~~~~~~~~~~~~~~Fee~F~~v~ie~~~d~ 660 (2439)
T KOG1064|consen 581 KFIGEVFNIVSQQSTARPGCILELDPIEKHNGSNSQLLHVFQEGFITADEHFMDSDSGGSPNPLFEEKFYGVIIEKKIDS 660 (2439)
T ss_pred hHhhhhhccccccccCCCcEEEeccccccccccchhhhhhhccCceeecccccccccccCCCccccccceeeeeeeeccc
Confidence 888899999999999999999999999999999999999999999999999 777777777788999999998888887
Q ss_pred ---cccCcCCCCCCccCccEEEEeecCCCcCCCccccCCCCCCCCCCCeEEEEeecCCcEEEEEEEeCCCCCCceeeeEe
Q 000054 693 ---PCSSQFPEPHTRNWVTSFAVVCPNNLVPMQQKLVYDNDPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELV 769 (2548)
Q Consensus 693 ---~~s~~~p~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~pY~~at~csDg~vRfWkc~v~~~~~~~~~W~~w 769 (2548)
+|+|++| +||+| +++++.|++ |||++++.||+ +||+|||+|+||+||||||++.++++.... ||
T Consensus 661 ls~v~~q~l~---lpE~v-~i~~~~Psa-----ghlSssS~ypa--apYli~t~~sDg~vRfWrc~~~~d~~~~~s--~W 727 (2439)
T KOG1064|consen 661 LSSVYTQELD---LPEGV-DIIVISPSA-----GHLSSSSNYPA--APYLIATICSDGLVRFWRCRVQGDDTAPNS--EW 727 (2439)
T ss_pred cceeccCCCC---cccce-eEEEecCcc-----ccccccccCcC--cceEEEEeccCCceeeeeeeeccCCCCccc--hh
Confidence 7888885 99999 899999999 99999999999 999999999999999999999876544333 78
Q ss_pred eeeecCCCCceEEEeecCCCeEEEEecccC-CCCcceEEEEEeecccccce-EEEeeEeeccC-----------ceEEee
Q 000054 770 GMLVAHQGPVSAISLTDGGRKIATVSAASH-SNAVSNVRIWESVCVTELGS-FVLEDTLSFDT-----------NIVAVN 836 (2548)
Q Consensus 770 ~~~~~~~g~~~~is~s~~gr~a~~~~~~~~-~~~~s~lsIwd~~~~s~ggs-~vlE~~~~~~~-----------~iv~LD 836 (2548)
+|+.+ +|+|+|+||+||+|+++++ ++...+|+|++ |+++||+ |++|++|+.+. +|||||
T Consensus 728 ~l~~~------~Is~a~tgr~A~ay~~~~s~s~~~~~vai~e--ces~ggS~W~le~ti~~~~~~~e~~~~n~~~lv~LD 799 (2439)
T KOG1064|consen 728 PLVSE------EISCAQTGRLACAYKKGSSTSIFALKVAIFE--CESRGGSIWVLEQTIHSDEEHLESIFHNDKHLVDLD 799 (2439)
T ss_pred HHHHh------hhhhcccCceeEEEecCCCcchheeEEEEEE--ecCccceEEEeehhhhhhhhhhhhhccccccceeee
Confidence 88887 8999999999999999987 66778999999 7888888 99999999853 899999
Q ss_pred eeecCCCcEEEEEeecceEEEEEecccCcccccccc--------------cccccccceeecc----CCCCC-ccccccc
Q 000054 837 WLTLENGQSLLGVCLQNELKVYAQRHYGGQILLDTK--------------NSLKMQNWFCLAF----SPTFA-AHDFTWG 897 (2548)
Q Consensus 837 W~s~edg~~ILtVG~~~~v~lytqlr~d~~~~~~~~--------------~~~~~~~w~~i~~----~~t~~-i~dlsW~ 897 (2548)
||||||||||||||||++|+||+|+|++|++..... ...-.+.|+++|. ++++| +.|++|+
T Consensus 800 W~Stedg~hILtVg~g~~v~lY~qlr~~~~~~t~~~~~~~s~~~P~~~~~~~~~~~~W~~lR~idl~~gtp~lp~~~sWv 879 (2439)
T KOG1064|consen 800 WTSTEDGQHILTVGFGSKVLLYGQLRQDYTNQTFAAMSSESQIRPLFRSTKSLSASSWVLLRSIDLLSGTPPLPVDLSWV 879 (2439)
T ss_pred eeecCCCcEEEEEeccceEEEEeecccchhhhhhhhhcchhhcccchhhhccccccceeeeeEEeeecCCCCCcccccce
Confidence 999999999999999999999999999999865221 1112237877763 48888 8999999
Q ss_pred cceeEEEEecceeeeeeccchhhccccccccCCCccccccccccCCcCCCceeeeeccccCcCccCCCCCcccCCCcccc
Q 000054 898 RRAIAIVVHQSYLSIYSQFLFLIDKKHQAKCNSNVFIDNFCCHKSGINENIVSTIFTVCDSESSAGDQRGDYESAPSVNI 977 (2548)
Q Consensus 898 rdGiLVVGm~nem~vySQW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 977 (2548)
||||||||||||||||+||++... | ..+........+.+..+. .+ ++.+.-.....+. ....
T Consensus 880 rdGilVv~md~em~vy~qw~~~~~---~---~~D~~l~s~~~d~s~~~~--------~~---~~~~~~~~~~S~~-~~~~ 941 (2439)
T KOG1064|consen 880 RDGILVVAMDNEMHVYNQWKPSLV---Q---GRDSSLLSTTNDISLLDS--------TS---TSSGCLPSKKSRV-LGDT 941 (2439)
T ss_pred ecceEEEeecCcceehhccccccc---c---ccCcccccCccchHHHHh--------hc---cccccccCccccc-cccc
Confidence 999999999999999999997211 1 001100000000000000 00 0000000011110 0011
Q ss_pred cccccccccccccccCCcc-ccccCHHHHHHHHcCCCCCCchHHHHHHHHcCCchhHHHHHHHHHHhcCCCCCCccc---
Q 000054 978 DMKNDHLVASDQLKCGGAI-LGSWSMLEIAEKLRGSLPVYHPKALFLNIYSGNWKRAYVSVRHLVENLPSNYPSEKR--- 1053 (2548)
Q Consensus 978 ~~~~~~~~~~~~~~~~~~~-~~~~~lfe~~~~lngpLP~YHPq~L~q~l~~Gk~~~Vk~il~~l~~~l~~~~~~~~~--- 1053 (2548)
.+.+...++.. .+.+.. +.+.++||++++|+|+|||||||||+|+|++||++|||+||.||++||+....-...
T Consensus 942 s~~~~~~~~~a--~~~~t~~~~~~glfe~a~vl~g~LPqYHP~qLl~ll~~gk~rrakAIL~hL~~cl~~~~~~~~~~~~ 1019 (2439)
T KOG1064|consen 942 SVANMSCIGTA--YGSPTVDIDDMGLFEAAHVLSGILPQYHPQQLLELLDAGKVRRAKAILLHLVLCLKGSVTVHKDLAS 1019 (2439)
T ss_pred chhhccccccc--cCCcccccccccHHHHHHhhCCCCcccCHHHHHHHHHcCcHHHHHHHHHHHHHHhcccccccccccc
Confidence 11122222111 133444 588999999999999999999999999999999999999999999999872211111
Q ss_pred -------------ccccCCCCCCcccchhhhhcccccCCCCCCCcccCCCCcccchhhhhhccccccccCCCCCCCchhh
Q 000054 1054 -------------YCYTKSSHIVPQILLSTYFEGLLSKGSTDNGFQWSGLNTFSTSLQFRQFAYNMDLDASNSSSSTKSE 1120 (2548)
Q Consensus 1054 -------------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1120 (2548)
-+++++++++|.+++....+|.++.....++ ...|.+.|+. ....+ -..+++++
T Consensus 1020 ~st~~~~~d~~~~~~~~ei~SipplPl~~l~~ad~Ds~~~s~e~-------s~gyd~lF~~-----~~~~~-~~~e~d~~ 1086 (2439)
T KOG1064|consen 1020 DSTSVLCQDELISKDTTEIDSLPPLPLYALLAADRDSPYQSVEK-------SSGYDELFND-----ELSKT-ILLETDEE 1086 (2439)
T ss_pred ccccccchhhhccccchhhccCCCCcHHHhhccccCCcceeccc-------ccccchhhhc-----ccccc-ccccchhh
Confidence 1224778888888777766665432211111 1113445521 11111 12455666
Q ss_pred HHHHHHHhhccccCcCCCHHHHHHHHHHHHHHHHhhcccccccccccCccccchhhhhHHHHHHHhhhcCcccccccccc
Q 000054 1121 LSGFVELLQNVYELAGVTDAEKMEILAVVDLLNEFDNKHSASVYENLDEPGQRFWVELRFQLLCFFRRFGKLVSAEELAV 1200 (2548)
Q Consensus 1121 ~~~l~e~L~~~~~Lp~Lt~~eQ~~L~al~d~v~~~~~~~~~~~~~~lD~~g~Rfll~~~~~~~~~~~~~~~~~~~~~~~l 1200 (2548)
.+.+++.|-++.+||||||+|||+|+||||||+++...++. ++|||||+|||++||+++++..+..++.++.+..+|
T Consensus 1087 ~s~FLt~lLths~lpgLSR~eQm~LlAlaDtv~~~st~~~~---~tLDecGlRfllamr~~~~ll~~lp~~raql~~~gl 1163 (2439)
T KOG1064|consen 1087 FSYFLTELLTHSSLPGLSRLEQMHLLALADTVAETSTDHSE---ETLDECGLRFLLALRLHTLLLTSLPGYRAQLLHQGL 1163 (2439)
T ss_pred hhHHHHHHHhhccCCCccHHHHHHHHHHHHHHHHhcccccc---ccccccchhHHHHHHHHHHHHhhchhhhhhhhhcCC
Confidence 66766666666799999999999999999999999877443 679999999999999997655544444556666799
Q ss_pred cccccchhhcccCHHHHHhc---cCCCCCChHHHHHcccEEEEeChHHHHHHHHHHHHHHHhccCCcchhHHHHHHhcch
Q 000054 1201 DSRLIAWAFHSECQETLFGS---ILPNEPTWPEMRALGVGFWYTDVTQLRTRMEKLARLQYLKKKDPKDCALLYIALNRI 1277 (2548)
Q Consensus 1201 ~~~~i~WA~hS~~qe~Ll~~---~~~~~~~W~~~r~~gv~~W~~~~~~lr~~~e~iA~~~~~~~~dp~~~al~Y~al~Kk 1277 (2548)
++++|+||||||+||+||+. +.+++++|++||++|||||++|..+||++||||||++|+++|||+||||||||||||
T Consensus 1164 ~ts~iaWAFHSe~eEeLlNl~psl~r~~~sW~elR~~gig~WlkN~~~Lr~ciEKlAK~af~kn~dP~DaALfYLALkKk 1243 (2439)
T KOG1064|consen 1164 STSHIAWAFHSENEEELLNLLPSLHRGDPSWNELREYGIGWWLKNEQTLRKCIEKLAKAAFQKKRDPLDAALFYLALKKK 1243 (2439)
T ss_pred chhheeeecccccHHHHHhhcccccCCCccHHHHHhhCchhhhccHHHHHHHHHHHHHHHHHhcCChhhhhHHHHHHHHH
Confidence 99999999999999999985 467899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccccCCchhHHHHhhccCChHHHHHHHHhhHHHHhhcchhHHHHHHHHhcCChhHHHHHHHHHcCChhHHhh
Q 000054 1278 QVLAGLFKISKDEKDKPLVGFLSRNFQEEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALV 1357 (2548)
Q Consensus 1278 ~vl~~L~k~~~~~~~~~~~~Fl~ndF~~~rwr~aA~KNAy~Ll~k~ry~~AaaFFLLag~~~dav~V~~~~l~D~qLA~~ 1357 (2548)
+||+||||++++|++++|++||+|||++||||+||+||||+||||||||+|||||||||+++|||+||++||+|+||||+
T Consensus 1244 ~Vl~gLfr~~~~hed~kmv~FfsnnF~eerWrkAAlKNAFvLLgKhRfe~AaaFFLLagslkDAI~VC~kkl~DiQLALv 1323 (2439)
T KOG1064|consen 1244 QVLWGLFRLAKDHEDTKMVVFFSNNFTEERWRKAALKNAFVLLGKHRFEHAAAFFLLAGSLKDAINVCCKKLNDIQLALV 1323 (2439)
T ss_pred HHHHHHHHHhhccccchHHHHhhccccHHHHHHHHHhhHHHHhhhHHHHHHHHHHhhcchHHHHHHHHHHhhhhhhhhhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCChhhHHhHhhhccccccccCChhHHHHHHHHhCChhHHHHHHhcCCcccccccccccCCCccCCCchHHHH
Q 000054 1358 ICRLVEKHGGPLERNLVTKFILPSSIERGDYWLTSLLEWELGNYSQSFLTMLGFQSTAVINNFALSSNSVAFMDPSIGLY 1437 (2548)
Q Consensus 1358 i~Rl~e~~~g~~~~~ll~~~vlp~~~~~~d~wl~s~~~w~l~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~f~DP~l~~y 1437 (2548)
||||||||+||++++||+++|||.+.+.+|+||+||+||+||+|.+|++||++..+.+....-...+++.+| .+|
T Consensus 1324 I~RlYEgd~g~~~~~LL~~~vLp~~v~~~DpwLrSmayWiLkdy~rAl~tLl~~~~~end~~~~s~~~~~Vf-----~ny 1398 (2439)
T KOG1064|consen 1324 ICRLYEGDGGPTYKELLNKYVLPIAVQHNDPWLRSMAYWILKDYTRALLTLLGQLPRENDALYTSASNPEVF-----NNY 1398 (2439)
T ss_pred eeeeecCCCchHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHhcCccccChhhhhcccCcchh-----hch
Confidence 999999999999999999999999999999999999999999999999999987332211110112334444 466
Q ss_pred HHHhhchhhhhHh------------hh----ccchhhhHHHHHHHHHHHHHhcCCChhhhhhcccCCCCCCCCCcccccc
Q 000054 1438 CLMLANKNSMRNA------------IG----EKNAAILGRWAALMRATALNRCGLPLEALDCLSSSPSTIGGTDQESVLN 1501 (2548)
Q Consensus 1438 ~~~l~~~~~~r~~------------~~----~~~~~~~~~~~~~~~a~~~~r~Gc~~LAL~~l~~~~~~~~~~~~~~~~~ 1501 (2548)
.+++++++.+|+. .| ++.++.+|||+||++|++|+|||||+||||||+++|+++.++.+.++..
T Consensus 1399 ~ylr~hplllr~~~~~~~~~~~~~~L~~~~~e~~~~~iErrl~l~tA~ah~r~GCpllALevLs~~p~~~~~s~d~s~~~ 1478 (2439)
T KOG1064|consen 1399 SYLRTHPLLLRRNLASAEKFSLKYALGGRSLEDIINLIERRLFLTTANAHCRCGCPLLALEVLSKWPKVIKGSKDTSEAS 1478 (2439)
T ss_pred hhhccCcHHHhhhhccccchhHHHHhhccchhhcccchheeeeeehhhHHHhcCCcHHHHHhhhcccccccCCcccchhh
Confidence 6666666665544 33 4458899999999999999999999999999999999998888777655
Q ss_pred CCCCcccccccCC---CCCCCCCcchhHHHHHHHHHhhccchhhHHhhhhccCCCCCCCCC---CCC------CC-CCCc
Q 000054 1502 IGHSHILPEILKP---SAATGSSNWLLRDVALHLESCAKLDLSLQYFSKLIRDHPSWPDLG---FGR------AS-KCFM 1568 (2548)
Q Consensus 1502 ~~~~~~~~~~~~~---~~~~~~~~Wl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------~~-~~~~ 1568 (2548)
+...+..++.-.| .....+.+|....|..-.....-...+++..++.-+| ...+... ..+ .+ ..+.
T Consensus 1479 ~~~~~d~q~~a~~~~~~~t~~s~dw~~p~vs~~~d~~~~~w~~e~~ee~~~~e-~~~~~~~~p~~~~~k~~~~~s~~~t~ 1557 (2439)
T KOG1064|consen 1479 KLQLDDRQSGASGEADSSTPISFDWSQPSVSDQDDSLELDWDEEQNEEEIDRE-ADEPLLNPPVRQCDKFLRQKSKNDTE 1557 (2439)
T ss_pred ccccccccccccCCCccCCcccccccCCcccCCCCCcccCccccccchhhccc-ccccccCCcccccchhhhhhhcCChH
Confidence 5443333331111 1112345788655544333322222222222221111 1111110 000 01 1133
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHhhhcccccChhHHHHHHHHHHhcCC--------------------------------
Q 000054 1569 DFEIHQYEKLVQNFQQKLYTALAFFEQRFSMDSSSLIAKILSLLCNNG-------------------------------- 1616 (2548)
Q Consensus 1569 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~l~~~~~~~l~n~~-------------------------------- 1616 (2548)
| +++|+.||++|+ |++|+||+|+++||++|||+||+++++|++.|+
T Consensus 1558 d-i~aq~~kfvA~l-~ilm~eLsTlatG~e~dGg~lr~ql~nwlerev~al~~~cd~~s~ak~~~~~~~~~~s~~~~~~~ 1635 (2439)
T KOG1064|consen 1558 D-IFAQQLKFVACL-KILMEELSTLATGYESDGGKLRYQLYNWLEREVKALKDTCDYCSSAKSKSSKSGDEKSLLLDREA 1635 (2439)
T ss_pred H-HHHHHHHHHHHH-HHHHHHHhcccccccccchhHHHHhhhhhhhhHHHHHhHHhhhhhhhcccccccchhhhhhcccc
Confidence 3 799999999999 799999999999999999999999998887653
Q ss_pred ------------------------------ch--hhhhhhhcCcccCC-------------cccccccccccCCcccccc
Q 000054 1617 ------------------------------LL--FIGYDLLHGYICQG-------------KSQEKSSDTVDGLSLYFCQ 1651 (2548)
Q Consensus 1617 ------------------------------ll--~~~y~~l~g~~~~~-------------~sqq~~~~~~~~~~l~~~~ 1651 (2548)
|| |++||+|||++++| |+|||++..++.++++.++
T Consensus 1636 a~~~ph~~~~~~~~~~~~~~r~~Wl~a~q~llr~~ls~cslh~a~~~~lasv~mEll~ll~~~q~e~~~~~l~~~l~~~~ 1715 (2439)
T KOG1064|consen 1636 ACDVPHQIKCFRLQRESAGKRKKWLKANQFLLRGFLSYCSLHGASGGGLASVRMELLLLLQEVQQETTEYQLSSPLPWPT 1715 (2439)
T ss_pred cccCCchhhhhhhchhhcccchHHHHHHHHHHHHHHHHHhhccccCCcchhhhHHHHHHHHHHHHHhHHHHHhcccCCCc
Confidence 24 99999999999999 8999999999999999999
Q ss_pred chhhHHHh-------------------------------------hhhhHHHHHHHHHHhhhcccccccCcccceecccc
Q 000054 1652 HKPLLKAA-------------------------------------EDISIFLSRFIAATSITCSHLKSTNSENVRHHEVR 1694 (2548)
Q Consensus 1652 ~~pll~a~-------------------------------------~~~~~~l~~~ls~c~~~c~~~~l~~~~~~s~~~~~ 1694 (2548)
+.|||.|| .++++++++.|++.+++||||++|++++|
T Consensus 1716 t~plL~a~va~~k~~vanp~~~le~~~~dil~~i~q~~~~p~p~~~~~~v~~l~sl~~~~s~~iY~~l~~~~~~------ 1789 (2439)
T KOG1064|consen 1716 TVPLLFACVAPLKTVVANPLLYLENQTHDILRAIIQEASVPHPDASDVKVYVLHSLAVSLSACIYQSLCDSESY------ 1789 (2439)
T ss_pred chhHHHHhhcCceEEEecCceehhhhHHHHHHHHHhccCCCCCChhhcceeeehhhHhhhcceeeeeecccccc------
Confidence 99999998 56689999999999999999999997776
Q ss_pred ccccCCCcccchhhHHHHhhhhhccccccCCccccccccCcccchHHHHHHHHHHHhhhcchhhHHHhhhhhhhhccCcc
Q 000054 1695 SRWSNAQGYYFQSIIFSLWSLRAAMRTFSGSFPEELITPLFLLDLYEYYVHFASAWLQRDSKGLLQVLQPVLITYTNGHT 1774 (2548)
Q Consensus 1695 ~~~~~~~~~~~~~~~~sl~~~~~~~r~~~~~~~~d~~~~p~~~~~~~~~~~ll~s~~~~ds~~L~~~L~~~~~a~~~~~~ 1774 (2548)
++...+.++|+++.++.+.+.++|++|||++.++++|.+++++|+|.|+++|||.|+|||++++
T Consensus 1790 ----------------~ll~~r~~~~~~s~~~~~t~~~~p~~wpgvs~l~~ll~~~~~~d~~~l~vll~E~~~av~~slf 1853 (2439)
T KOG1064|consen 1790 ----------------CLLTQRPRLRTGSKDELVTPNTSPAQWPGVSGLIALLDSEKEEDQSKLNVLLCESFVAVYLSLF 1853 (2439)
T ss_pred ----------------ccccCCCccccccccccccccCCcccccchHHHHHHhhhccccccCcceEeehHHHHHHHHHHH
Confidence 2556668899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHhhccccCCCcccccccCccceeeccccccccCCCCCCCcchhhhhccchhhhhhhhhhhccccccc
Q 000054 1775 PYEVDMNNLKTFFHQSAELLTRNTSIDNMVGDLQVSKFVDDERSTDLMNSIPEDERWQIMGACLWQHMSRFMKHKLNSMS 1854 (2548)
Q Consensus 1775 ~~~~~~~~~~~~~~~~~~~l~~~t~~~~~G~~~~~s~l~~~~~~~~~~~~~~~~e~~~~~~~sl~~~~s~~l~~~~rl~~ 1854 (2548)
+|++++++++++||+++|++++.||...||||.+ |..+++.+.+...+|..- .... -+.-+ .+.+
T Consensus 1854 i~~Lat~sS~~l~rl~~~~~n~~~~~~~fggg~~---l~~k~~a~~~~~~ap~~~-e~t~--------~n~~~---~~t~ 1918 (2439)
T KOG1064|consen 1854 IHALATLSSRELFRLVAHPLNNLMWSLVFGGGLK---LECKPQAQSLNRDAPSLS-EETK--------ENESK---VSTP 1918 (2439)
T ss_pred HHHHHhccHHHHHHHhccccChhheeeeecCcee---eeecCcccCCCCCCCccc-cccc--------ccCCC---CCCC
Confidence 9999999999999999999999999999999985 444455555444444221 0000 01122 3445
Q ss_pred cccccc---cccceecCccccccccccCCC-----Cccc-------------------CCccchhhHHHHHHHHHHHHHH
Q 000054 1855 VKLDEN---HSSRLLGGHISSWTSSLTNPE-----SASI-------------------GLKEQMRLLTLFLAQLLKSALL 1907 (2548)
Q Consensus 1855 ~~l~~~---~~~~~~~g~~s~~~~~~~~p~-----s~~~-------------------~~~~~~~l~~~~l~~~~~~~l~ 1907 (2548)
.++..+ ++|+|+||+.+||+||.+||. +++. .+.||-.-. .+--+++|+||+
T Consensus 1919 ~~~~~~~~~~~ekfippe~~i~~~f~~KP~~~~~D~d~s~~sdne~~~~~~D~~~s~~~l~e~~~~~-s~sw~ll~la~~ 1997 (2439)
T KOG1064|consen 1919 SKVSVDSPALHEKFIPPELSIWDYFKAKPSEDWYDSDESVESDNEDYVDDDDVRSSDEQLSEHNNPN-SYSWSLLRLAMV 1997 (2439)
T ss_pred CCCCCCchhhhhhcCCccccHHHHHhcCcccccccchhhhcccchhccccccccccHHHHHhhcCCc-cccHHHHHHHHH
Confidence 566666 999999999999999999991 1100 122221100 112267999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCChhhhhhhhcCCCcch---hhhhhccccccCCcCCCc-chhhhHHHhhhccCCCcc
Q 000054 1908 HISSHHVKQLAFFLRYKVENGFDIPTRRWLQEATPSQSGT---LYQHLNQIVVSMNIINNK-DEAAISELLWDVCSDPSI 1983 (2548)
Q Consensus 1908 ~~~~~~lk~~~~fl~~~~~~~~~~p~~~w~~~~~~~~~~~---~~~~~~~~~~~~t~~~~~-~~~~~~~~lw~~~~~p~~ 1983 (2548)
+++++++| +|++.+|++. ++=-.|||+.++.+.+.. |.+|+.+++|+||||+++ +++.+++|||+|+|+++.
T Consensus 1998 ~~~~hn~k---~~~~~aG~~~-spl~~n~i~~~~a~~~~~g~ai~~~~~l~~~~ntpf~s~~s~a~~~~rlW~~lv~q~~ 2073 (2439)
T KOG1064|consen 1998 QLALHNVK---EFHKRAGEDI-SPLCRNYINHRQAELSSNGPAILRNKALLEPSNTPFKSIDSSADSVKRLWAYLVKQEV 2073 (2439)
T ss_pred HHHhhhhH---hhhhhhcccc-cccccccccccchhhhcCCcceeehHhhcCccCCcccccccccccHHHHHHHHhcccc
Confidence 99999999 9999999994 332369999987776633 999999999999999998 899999999999999999
Q ss_pred chhhhhccccCcccccccccCCccccccccccccccccccccCccccCccccCCCcccccccccccCCCCCCcccccccc
Q 000054 1984 IHEGFTQEKLNWRSYINCKLSKGWSHINEGVKLKHEIKKTCKNEDKLGSTLASGEVGSASKDLFRNSRTSPRSWHKDANM 2063 (2548)
Q Consensus 1984 ~~~~fi~e~~n~~~~~~~~~~r~w~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2063 (2548)
+||+||+++|.+.. +.++++|+++
T Consensus 2074 ~qevfik~if~k~~-------------------------------~~e~~lG~~g------------------------- 2097 (2439)
T KOG1064|consen 2074 LQEVFIKYIFTKKK-------------------------------EIEADLGYSG------------------------- 2097 (2439)
T ss_pred cceeeeeehhccCC-------------------------------ccccccCcCC-------------------------
Confidence 99999999998831 1345777775
Q ss_pred ccccccCCCCceEEeccCceeEEEEeccCCCCcEEEeecCCceEE-----------eeccCccccc--------c-cchh
Q 000054 2064 ANEVIPFQAPKEICKRNGELFEALCVNSIDQRQGAIASNRKGIVF-----------FNLEDEIPLH--------D-QLKY 2123 (2548)
Q Consensus 2064 ~~~~~~f~~~~~ii~~~~~~I~a~~iN~~n~~~lalAs~rk~~~~-----------~~l~~~~~~~--------~-~~~~ 2123 (2548)
.+.||+ ++.|.|.||++|+.+++.+|+|++++-+-| .|..++.... . +..+
T Consensus 2098 --------~~~~ii-ke~e~ivaf~~n~~s~~~ia~an~~~~qe~dvs~~~~~q~~~w~~ne~d~~~~~~d~~~~~s~~~ 2168 (2439)
T KOG1064|consen 2098 --------GKARII-KESEEIVAFPVNKESVNTIAFANHHDVQEFDVSSSLAHQYYWWFGNERDTETKGVDPDANHSPPD 2168 (2439)
T ss_pred --------CceeEe-ecccceeccCcCcCCcceEEecCCCcchheeccchhhhhhhhhhcchhhhhhcCCCcccccCchh
Confidence 458899 999999999999999999999999965521 1222221000 0 0001
Q ss_pred hhccCCCCCCCCCCCCCCCCCCccCCCCCC-CCCCCccccccCccccccCCCCCCCcccCCccccCCCCccCCccccccc
Q 000054 2124 IWADADWPQNGWAGSESTPVPTFVSPGVGL-GSNKGAHLGLGGATIGVGSLARPGRDLTGGLAFGIPGYAGIGASALGWE 2202 (2548)
Q Consensus 2124 lw~~ad~p~n~w~~~~Stp~~ts~SP~vg~-~S~rGs~l~lggasiG~~ssa~p~~~l~G~~s~gi~G~~g~gaS~i~W~ 2202 (2548)
+.+ .++..|+.+.+-+++..|+.+. ++++|+.+++
T Consensus 2169 ~l~-----~~~~~~~~s~~~~~~n~~~~~~tq~~~~~~~~~--------------------------------------- 2204 (2439)
T KOG1064|consen 2169 ALA-----SQSTVGSFSNRFTPSNLPWLGSTQTSRGASVMI--------------------------------------- 2204 (2439)
T ss_pred hcc-----cccccccccccCCcccCCccccceecccceeEe---------------------------------------
Confidence 100 0111133333333344444443 3444444443
Q ss_pred cccCCccccCCCCccCCeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC
Q 000054 2203 TQDDFEDYVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY 2282 (2548)
Q Consensus 2203 ~~ed~e~~v~p~~tl~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd 2282 (2548)
++.++++ +++.-||..++.+||++||.|++|.+..++.+.+++.. +. ..|+.+.|+.+
T Consensus 2205 -----------k~~v~~v--~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~--------g~-s~vtr~~f~~q 2262 (2439)
T KOG1064|consen 2205 -----------KHPVENV--RRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA--------GN-SRVTRSRFNHQ 2262 (2439)
T ss_pred -----------ecccCce--eeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc--------Cc-chhhhhhhccc
Confidence 4455665 99999999999999999999999999999999998642 22 78999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee
Q 000054 2283 GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI 2362 (2548)
Q Consensus 2283 G~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl 2362 (2548)
|+.+..+..||.+.+|++. .+++...+|+.....++.++. ..++++|.+++++++.+||...++......
T Consensus 2263 Gnk~~i~d~dg~l~l~q~~------pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~- 2332 (2439)
T KOG1064|consen 2263 GNKFGIVDGDGDLSLWQAS------PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH- 2332 (2439)
T ss_pred CCceeeeccCCceeecccC------CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccceee-
Confidence 9999999999999999987 245555566665556666554 789999988899999999998754444323
Q ss_pred eccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCC
Q 000054 2363 TCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQ 2442 (2548)
Q Consensus 2363 ~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~ 2442 (2548)
.+|.++++++++.|. .++|++||.+|.|++||+|+ +.+++.
T Consensus 2333 ~~H~~gaT~l~~~P~-------~qllisggr~G~v~l~D~rq----rql~h~---------------------------- 2373 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPK-------HQLLISGGRKGEVCLFDIRQ----RQLRHT---------------------------- 2373 (2439)
T ss_pred eecCCCceEEEEcCc-------ceEEEecCCcCcEEEeehHH----HHHHHH----------------------------
Confidence 899999999999999 57999999999999999875 222221
Q ss_pred CceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEE
Q 000054 2443 NGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQV 2522 (2548)
Q Consensus 2443 sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLaf 2522 (2548)
-.. ++ ...+|++|+..|.|+||++....++++++.+|++..| |+.-+ .++.+
T Consensus 2374 ------------~~~----~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gf----Fr~~g-------~Q~~v 2425 (2439)
T KOG1064|consen 2374 ------------FQA----LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGF----FRNIG-------MQINV 2425 (2439)
T ss_pred ------------hhh----hh-hhheeeccCcccceEEEEccccchhhcCchhhcccch----hhhcC-------ceeee
Confidence 111 44 5679999999999999999999999999999988776 34333 34466
Q ss_pred cCCe-EEEEECCCc
Q 000054 2523 VSRG-FLSCGGDGS 2535 (2548)
Q Consensus 2523 SPdG-LaSGS~DGt 2535 (2548)
.+.+ |.+||+||+
T Consensus 2426 ~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2426 GQCNRIFSCGADGT 2439 (2439)
T ss_pred ccCceEEEecCCCC
Confidence 6667 999999985
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-136 Score=1307.42 Aligned_cols=618 Identities=32% Similarity=0.528 Sum_probs=521.9
Q ss_pred CcEEEEEEEeCCCCCCceeeeEeeeeecCCCCceEEEeecCCCeEEEEecccCCCCcceEEEEEeecccccceEEEeeEe
Q 000054 747 GSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAISLTDGGRKIATVSAASHSNAVSNVRIWESVCVTELGSFVLEDTL 826 (2548)
Q Consensus 747 g~vRfWkc~v~~~~~~~~~W~~w~~~~~~~g~~~~is~s~~gr~a~~~~~~~~~~~~s~lsIwd~~~~s~ggs~vlE~~~ 826 (2548)
|+||+|+++|+.+. ..+.|.++..+.++..+|..|+||.+| |+|++++ ++++|+|||+ .+| +|||++
T Consensus 1 g~~~~~~a~v~~~~-~~~~w~~t~~~~T~i~~~~li~gss~~-k~a~V~~-----~~~~LtIWD~----~~~--~lE~~~ 67 (631)
T PF12234_consen 1 GRIRTWTARVDTES-NKIEWLLTSTFETGISNPSLISGSSIK-KIAVVDS-----SRSELTIWDT----RSG--VLEYEE 67 (631)
T ss_pred CeeEEEEEEEcCCC-CeEEEEEEEEEecCCCCcceEeecccC-cEEEEEC-----CCCEEEEEEc----CCc--EEEEee
Confidence 78999999997664 489999999999999999999999998 6888866 6889999997 455 588888
Q ss_pred ec--cCceEEeeeeecCCCcEEEEEeecceEEEEEecccCcccccccccccccccceeeccCCCCC-ccccccccceeEE
Q 000054 827 SF--DTNIVAVNWLTLENGQSLLGVCLQNELKVYAQRHYGGQILLDTKNSLKMQNWFCLAFSPTFA-AHDFTWGRRAIAI 903 (2548)
Q Consensus 827 ~~--~~~iv~LDW~s~edg~~ILtVG~~~~v~lytqlr~d~~~~~~~~~~~~~~~w~~i~~~~t~~-i~dlsW~rdGiLV 903 (2548)
+| ++.|+|||||||||||+||||||+++|+||+|+||||++..+.+...++ +++ .++|+| |+|++|++||+||
T Consensus 68 ~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~-i~i---~~~T~h~Igds~Wl~~G~Lv 143 (631)
T PF12234_consen 68 SFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRK-IDI---SSHTPHPIGDSIWLKDGTLV 143 (631)
T ss_pred eecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEE-EEe---ecCCCCCccceeEecCCeEE
Confidence 88 8899999999999999999999999999999999998887655554443 111 358877 9999999999999
Q ss_pred EEecceeeeeeccchhhccccccccCCCccccccccccCCcCCCceeeeeccccCcCccCCCCCcccCCCcccccccccc
Q 000054 904 VVHQSYLSIYSQFLFLIDKKHQAKCNSNVFIDNFCCHKSGINENIVSTIFTVCDSESSAGDQRGDYESAPSVNIDMKNDH 983 (2548)
Q Consensus 904 VGm~nem~vySQW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 983 (2548)
||+||||+||++|.. . ...+.
T Consensus 144 V~sGNqlfv~dk~~~---~----------------------~~~l~---------------------------------- 164 (631)
T PF12234_consen 144 VGSGNQLFVFDKWLD---T----------------------SQSLG---------------------------------- 164 (631)
T ss_pred EEeCCEEEEECCCcC---c----------------------hhhcc----------------------------------
Confidence 999999999999963 0 00111
Q ss_pred cccccccccCCccccccCHHHHHHHHcCCCCCCchHHHHHHHHcCCchhHHHHHHHHHHhcCCCCCCcccccccCCCCCC
Q 000054 984 LVASDQLKCGGAILGSWSMLEIAEKLRGSLPVYHPKALFLNIYSGNWKRAYVSVRHLVENLPSNYPSEKRYCYTKSSHIV 1063 (2548)
Q Consensus 984 ~~~~~~~~~~~~~~~~~~lfe~~~~lngpLP~YHPq~L~q~l~~Gk~~~Vk~il~~l~~~l~~~~~~~~~~~~~~~~~~~ 1063 (2548)
+......+||||+|++||||||+||||||+|||++||+++||+||.||+++|+.....+ .... +..
T Consensus 165 ---------~~~~~~~~dl~~~v~~LngpLPvYHPqfL~q~l~~Gk~~lv~~IL~~L~~~L~~~~~~~--i~~~---~~~ 230 (631)
T PF12234_consen 165 ---------SRKILPNWDLFELVSRLNGPLPVYHPQFLIQLLLSGKFKLVKKILLHLFKCLRFLDEGE--ISDL---DSF 230 (631)
T ss_pred ---------ccccCccCCHHHHHHHhCCCCCCcCHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcccc--cccc---ccc
Confidence 00112237899999999999999999999999999999999999999999999865321 1111 123
Q ss_pred cccchhhhhcccccCCCCCCCcccCCCCcccchhhhhhccccccccCCCCCCCchhhHHHHHHHhhccccCcCCCHHHHH
Q 000054 1064 PQILLSTYFEGLLSKGSTDNGFQWSGLNTFSTSLQFRQFAYNMDLDASNSSSSTKSELSGFVELLQNVYELAGVTDAEKM 1143 (2548)
Q Consensus 1064 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~L~~~~~Lp~Lt~~eQ~ 1143 (2548)
+.+++++|+....+....... ... + +. .+...+.+..++++.+..|+|.|+++ +||+||+|||+
T Consensus 231 l~i~~~~~~~~~~~~~~~~~~------~~~-----~---~~-~~~~~~~~~~f~~~~a~~L~e~L~~~-~LP~Lt~~EQ~ 294 (631)
T PF12234_consen 231 LGIPLEKFYESDESDSSVDKT------ESS-----S---DQ-KDLSDEEFSKFNEELADSLSEKLTKI-SLPGLTRHEQM 294 (631)
T ss_pred cCCcHHHHhccCccccccccc------ccc-----c---cc-ccccccCccccCHHHHHHHHHHhhcC-CccCCCHHHHH
Confidence 678888888654322111000 000 0 00 01122223367789999999999998 99999999999
Q ss_pred HHHHHHHHHHHhhcccccccccccCccccchhhhhHHHHHHHhhhcCcccccccccccccccchhhcccCHHHHHhccCC
Q 000054 1144 EILAVVDLLNEFDNKHSASVYENLDEPGQRFWVELRFQLLCFFRRFGKLVSAEELAVDSRLIAWAFHSECQETLFGSILP 1223 (2548)
Q Consensus 1144 ~L~al~d~v~~~~~~~~~~~~~~lD~~g~Rfll~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~WA~hS~~qe~Ll~~~~~ 1223 (2548)
+|++|||++++++++ +++||+||+|||+++|++++ .++. .++.++++|+|+|||||++||+|++.+.+
T Consensus 295 ~L~~iie~v~~v~~~-----~~~lD~~g~Rfll~~r~~~~--~~~~-----~~~~~l~~~~i~WA~hS~~qe~Ll~~~~~ 362 (631)
T PF12234_consen 295 TLLAIIETVAEVEKN-----RRSLDENGLRFLLSVRLHQL--HRKS-----LEQSSLSTRDIAWAFHSDSQEELLSLVPP 362 (631)
T ss_pred HHHHHHHHHHHhhhc-----ccCCChhHHHHHHHHHHHHh--hccc-----ccccCcCHHHHHHHHhccCHHHHHHHhhh
Confidence 999999999999987 68999999999999997653 2221 33458999999999999999999998876
Q ss_pred CC-CChHHHHHcccEEEEeChHHHHHHHHHHHHHHHhc--cCCcchhHHHHHHhcchHHHHHHHhccccCC-chhHHHHh
Q 000054 1224 NE-PTWPEMRALGVGFWYTDVTQLRTRMEKLARLQYLK--KKDPKDCALLYIALNRIQVLAGLFKISKDEK-DKPLVGFL 1299 (2548)
Q Consensus 1224 ~~-~~W~~~r~~gv~~W~~~~~~lr~~~e~iA~~~~~~--~~dp~~~al~Y~al~Kk~vl~~L~k~~~~~~-~~~~~~Fl 1299 (2548)
.. ++|+++|++||+||+++.+.||+++|+|||++|++ +|||+||||||+|||||+||+||||++.+++ +++|.+||
T Consensus 363 ~~~~~W~~~r~~gv~~W~~~~~~Lr~~~E~iAr~~~~~~~~~dp~~~al~YlAl~Kk~vL~~L~k~a~~~~~~~k~~~Fl 442 (631)
T PF12234_consen 363 QIKLSWEEARELGVGFWLRSIESLRSQFEKIARNEFQKNDTKDPSDCALFYLALGKKKVLAGLWKMASWHKEQQKMAKFL 442 (631)
T ss_pred hccCCHHHHHhhCCEEeecCHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHhccHHHHHHHHHhhhcccccHHHHHHH
Confidence 44 79999999999999999999999999999999998 5999999999999999999999999988764 57899999
Q ss_pred hccCChHHHHHHHHhhHHHHhhcchhHHHHHHHHhcCChhHHHHHHHHHcCChhHHhhhhhhhccCCChhhHHhHhhhcc
Q 000054 1300 SRNFQEEKNKAAALKNAYVLLGRHQLELAIAFFLLGGDAASAVTVCARNLGDVQLALVICRLVEKHGGPLERNLVTKFIL 1379 (2548)
Q Consensus 1300 ~ndF~~~rwr~aA~KNAy~Ll~k~ry~~AaaFFLLag~~~dav~V~~~~l~D~qLA~~i~Rl~e~~~g~~~~~ll~~~vl 1379 (2548)
+|||+|||||+||+||||||||||||++|||||||||+++|||+||++||+|+||||+||||||||+||+++++|+++||
T Consensus 443 ~ndF~~~rwr~AAlKNAyaLlsk~Ry~~AAaFFLLag~l~dAv~V~~~~l~D~qLAi~i~Rl~e~d~gp~~~~ll~~~vL 522 (631)
T PF12234_consen 443 SNDFTEPRWRTAALKNAYALLSKHRYEYAAAFFLLAGSLKDAVNVCLRQLNDPQLAIAIARLYEGDNGPVLKKLLEEHVL 522 (631)
T ss_pred hhcCCChHHHHHHHHhHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHccChhHHHHHHHHHcCCCchHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCChhHHHHHHHHhCChhHHHHHHhcCCcccccccccc-----cCCCccCCCchHHHHHHHhhchhhhhHhhhcc
Q 000054 1380 PSSIERGDYWLTSLLEWELGNYSQSFLTMLGFQSTAVINNFAL-----SSNSVAFMDPSIGLYCLMLANKNSMRNAIGEK 1454 (2548)
Q Consensus 1380 p~~~~~~d~wl~s~~~w~l~~~~~a~~~l~~~~~~~~~~~~~~-----~~~~~~f~DP~l~~y~~~l~~~~~~r~~~~~~ 1454 (2548)
|.|.++|||||+||+||+||||++|+++|++.+.....+.+.. ..+++..+||+|+++|.+||+|+ +++..|..
T Consensus 523 p~a~~~~d~wl~s~~~W~L~~~~~ai~~Li~~~~~~~~~~~~~~~~~~~~~sfl~~dp~L~~ly~~Lr~k~-~~~~~g~~ 601 (631)
T PF12234_consen 523 PEAIKEGDRWLASWAFWMLGDYDEAIRALISPPIDLLNESPLSPSSPCNSKSFLVDDPALVVLYQQLRSKN-LQTLKGAS 601 (631)
T ss_pred ccccccCCHHHHHHHHHhcCCHHHHHHHHhcCccccccccccccccccccccccCCCcHHHHHHHHHHHhc-ccccchhc
Confidence 9999999999999999999999999999998776544332211 22344456999998889889886 99999999
Q ss_pred chhhhHHHHHHHHHHH-HHhcCCChhhhhh
Q 000054 1455 NAAILGRWAALMRATA-LNRCGLPLEALDC 1483 (2548)
Q Consensus 1455 ~~~~~~~~~~~~~a~~-~~r~Gc~~LAL~~ 1483 (2548)
.+++.+||.|++++++ |+|||||+|||++
T Consensus 602 ~i~~~~E~~fvl~~a~~y~RmGCd~LaL~L 631 (631)
T PF12234_consen 602 KISPKEEFEFVLRVARIYDRMGCDLLALSL 631 (631)
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCchhhccC
Confidence 9999999988886555 8999999999986
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=440.38 Aligned_cols=756 Identities=19% Similarity=0.197 Sum_probs=525.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHhhhcccccChhHHHHHHHHHHhcCCch-----------------hhhhhhhcCcccCCc
Q 000054 1571 EIHQYEKLVQNFQQKLYTALAFFEQRFSMDSSSLIAKILSLLCNNGLL-----------------FIGYDLLHGYICQGK 1633 (2548)
Q Consensus 1571 ~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~l~~~~~~~l~n~~ll-----------------~~~y~~l~g~~~~~~ 1633 (2548)
+..+..|+..+- .+.-++ ..|+|.++......+-+.-..--+-|+. -.+++.+|.|+++.+
T Consensus 1540 p~~~~~k~~~~~-s~~~t~-di~aq~~kfvA~l~ilm~eLsTlatG~e~dGg~lr~ql~nwlerev~al~~~cd~~s~ak 1617 (2439)
T KOG1064|consen 1540 PVRQCDKFLRQK-SKNDTE-DIFAQQLKFVACLKILMEELSTLATGYESDGGKLRYQLYNWLEREVKALKDTCDYCSSAK 1617 (2439)
T ss_pred cccccchhhhhh-hcCChH-HHHHHHHHHHHHHHHHHHHHhcccccccccchhHHHHhhhhhhhhHHHHHhHHhhhhhhh
Confidence 445556655554 344455 6788888877776666655444444432 346778889998886
Q ss_pred ccccccccccCCcc------ccccchhhHHHh-----------hhhhHHHHHHHHHHhhhccccccc------C--cccc
Q 000054 1634 SQEKSSDTVDGLSL------YFCQHKPLLKAA-----------EDISIFLSRFIAATSITCSHLKST------N--SENV 1688 (2548)
Q Consensus 1634 sqq~~~~~~~~~~l------~~~~~~pll~a~-----------~~~~~~l~~~ls~c~~~c~~~~l~------~--~~~~ 1688 (2548)
+++.+....+..-+ ..|-..|+.... +.++.++|.||+||++|+++.+.| + +.||
T Consensus 1618 ~~~~~~~~~~s~~~~~~~a~~~ph~~~~~~~~~~~~~~r~~Wl~a~q~llr~~ls~cslh~a~~~~lasv~mEll~ll~~ 1697 (2439)
T KOG1064|consen 1618 SKSSKSGDEKSLLLDREAACDVPHQIKCFRLQRESAGKRKKWLKANQFLLRGFLSYCSLHGASGGGLASVRMELLLLLQE 1697 (2439)
T ss_pred cccccccchhhhhhcccccccCCchhhhhhhchhhcccchHHHHHHHHHHHHHHHHHhhccccCCcchhhhHHHHHHHHH
Confidence 66542221111111 112222332221 778999999999999999999944 3 6788
Q ss_pred eeccccccccC---CCcccchhhHHHHhh---hhhccccccCCccccccccCcccc------hHHHHHHHHHHHhhhcch
Q 000054 1689 RHHEVRSRWSN---AQGYYFQSIIFSLWS---LRAAMRTFSGSFPEELITPLFLLD------LYEYYVHFASAWLQRDSK 1756 (2548)
Q Consensus 1689 s~~~~~~~~~~---~~~~~~~~~~~sl~~---~~~~~r~~~~~~~~d~~~~p~~~~------~~~~~~~ll~s~~~~ds~ 1756 (2548)
+||+....... +.+..+|++++++.+ ++++|..|+.+..+|++.+++++. .....++.+.+.+++++.
T Consensus 1698 ~q~e~~~~~l~~~l~~~~t~plL~a~va~~k~~vanp~~~le~~~~dil~~i~q~~~~p~p~~~~~~v~~l~sl~~~~s~ 1777 (2439)
T KOG1064|consen 1698 VQQETTEYQLSSPLPWPTTVPLLFACVAPLKTVVANPLLYLENQTHDILRAIIQEASVPHPDASDVKVYVLHSLAVSLSA 1777 (2439)
T ss_pred HHHHhHHHHHhcccCCCcchhHHHHhhcCceEEEecCceehhhhHHHHHHHHHhccCCCCCChhhcceeeehhhHhhhcc
Confidence 88874422222 335788999888888 899999999999999999875333 222577778888999999
Q ss_pred hhHHHhhhhhhhhccCcccccccchhHHHHHH--hhccccCCCcccc-cccCccceeeccccccccCCCCCCCcchhhhh
Q 000054 1757 GLLQVLQPVLITYTNGHTPYEVDMNNLKTFFH--QSAELLTRNTSID-NMVGDLQVSKFVDDERSTDLMNSIPEDERWQI 1833 (2548)
Q Consensus 1757 ~L~~~L~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~t~~~-~~G~~~~~s~l~~~~~~~~~~~~~~~~e~~~~ 1833 (2548)
|+||.| |+++.++ +-+.. ...| ..-|.++|+|.|+ |||+..++++|.+++++++|++.++++|+.++
T Consensus 1778 ~iY~~l-------~~~~~~~-ll~~r--~~~~~~s~~~~~t~~~~p~~wpgvs~l~~ll~~~~~~d~~~l~vll~E~~~a 1847 (2439)
T KOG1064|consen 1778 CIYQSL-------CDSESYC-LLTQR--PRLRTGSKDELVTPNTSPAQWPGVSGLIALLDSEKEEDQSKLNVLLCESFVA 1847 (2439)
T ss_pred eeeeee-------ccccccc-cccCC--CccccccccccccccCCcccccchHHHHHHhhhccccccCcceEeehHHHHH
Confidence 999999 7788664 22222 1111 1228899999999 99999999999999999999999999999999
Q ss_pred ccchhhh-----hhhhhhhccccccccccccccccceecCccccccccccCCCCcccCCccchhhHHHHHHHHHHHHHHH
Q 000054 1834 MGACLWQ-----HMSRFMKHKLNSMSVKLDENHSSRLLGGHISSWTSSLTNPESASIGLKEQMRLLTLFLAQLLKSALLH 1908 (2548)
Q Consensus 1834 ~~~sl~~-----~~s~~l~~~~rl~~~~l~~~~~~~~~~g~~s~~~~~~~~p~s~~~~~~~~~~l~~~~l~~~~~~~l~~ 1908 (2548)
+|++||+ ++|+++| ||.+|++++.+|+.+||||+....++.+.+
T Consensus 1848 v~~slfi~~Lat~sS~~l~---rl~~~~~n~~~~~~~fggg~~l~~k~~a~~---------------------------- 1896 (2439)
T KOG1064|consen 1848 VYLSLFIHALATLSSRELF---RLVAHPLNNLMWSLVFGGGLKLECKPQAQS---------------------------- 1896 (2439)
T ss_pred HHHHHHHHHHHhccHHHHH---HHhccccChhheeeeecCceeeeecCcccC----------------------------
Confidence 9999999 8999999 999999999999999999987332211111
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCChhhhhhhhcCCCcchhhhhhccccccCCcCCCcchhhhHHHhhhccCCCccchhhh
Q 000054 1909 ISSHHVKQLAFFLRYKVENGFDIPTRRWLQEATPSQSGTLYQHLNQIVVSMNIINNKDEAAISELLWDVCSDPSIIHEGF 1988 (2548)
Q Consensus 1909 ~~~~~lk~~~~fl~~~~~~~~~~p~~~w~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~lw~~~~~p~~~~~~f 1988 (2548)
.++ +.|... .++- .+ ..|..|+.+ .++++..++|+|
T Consensus 1897 -----------------~~~-~ap~~~-e~t~--------~n----~~~~~t~~~-------------~~~~~~~~~ekf 1932 (2439)
T KOG1064|consen 1897 -----------------LNR-DAPSLS-EETK--------EN----ESKVSTPSK-------------VSVDSPALHEKF 1932 (2439)
T ss_pred -----------------CCC-CCCccc-cccc--------cc----CCCCCCCCC-------------CCCCchhhhhhc
Confidence 001 122111 0000 00 112333332 378899999999
Q ss_pred hccccCcccccccccCCccccccccccccccccccccCccccCccccCCCcccccccccccCCCCCCccccccccccccc
Q 000054 1989 TQEKLNWRSYINCKLSKGWSHINEGVKLKHEIKKTCKNEDKLGSTLASGEVGSASKDLFRNSRTSPRSWHKDANMANEVI 2068 (2548)
Q Consensus 1989 i~e~~n~~~~~~~~~~r~w~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2068 (2548)
|.+.++.......++.+-|.++.+++..+++.+. ++.+++ .++.|- . -...-.+-++. -...+.++.
T Consensus 1933 ippe~~i~~~f~~KP~~~~~D~d~s~~sdne~~~-~~~D~~-----~s~~~l--~----e~~~~~s~sw~-ll~la~~~~ 1999 (2439)
T KOG1064|consen 1933 IPPELSIWDYFKAKPSEDWYDSDESVESDNEDYV-DDDDVR-----SSDEQL--S----EHNNPNSYSWS-LLRLAMVQL 1999 (2439)
T ss_pred CCccccHHHHHhcCcccccccchhhhcccchhcc-cccccc-----ccHHHH--H----hhcCCccccHH-HHHHHHHHH
Confidence 9999999988888888999999886666655443 333321 111110 0 00000111111 112445667
Q ss_pred cCCCCceEEeccCceeEEEEeccCCCCcEEEeecCCceEEeeccCcccccccchhhhccCCCCCCCCCCCCCCCCCCccC
Q 000054 2069 PFQAPKEICKRNGELFEALCVNSIDQRQGAIASNRKGIVFFNLEDEIPLHDQLKYIWADADWPQNGWAGSESTPVPTFVS 2148 (2548)
Q Consensus 2069 ~f~~~~~ii~~~~~~I~a~~iN~~n~~~lalAs~rk~~~~~~l~~~~~~~~~~~~lw~~ad~p~n~w~~~~Stp~~ts~S 2148 (2548)
.|.++.++.++.|+.|..+|.|..|..+..++++ ++.++.+.....+......++|..|+|+.+.|++-..++.++.++
T Consensus 2000 ~~hn~k~~~~~aG~~~spl~~n~i~~~~a~~~~~-g~ai~~~~~l~~~~ntpf~s~~s~a~~~~rlW~~lv~q~~~qevf 2078 (2439)
T KOG1064|consen 2000 ALHNVKEFHKRAGEDISPLCRNYINHRQAELSSN-GPAILRNKALLEPSNTPFKSIDSSADSVKRLWAYLVKQEVLQEVF 2078 (2439)
T ss_pred HhhhhHhhhhhhcccccccccccccccchhhhcC-CcceeehHhhcCccCCcccccccccccHHHHHHHHhcccccceee
Confidence 8899999999999999999999999999999999 777777766655555555689999999999999999999988766
Q ss_pred CCCCCCCCCCccccccCccccccCCCCCCCcccCCccccCCCCccCCccccccccccCCccccCCCCccCCeEEEEEEEc
Q 000054 2149 PGVGLGSNKGAHLGLGGATIGVGSLARPGRDLTGGLAFGIPGYAGIGASALGWETQDDFEDYVDPPATVENISTRAFSSH 2228 (2548)
Q Consensus 2149 P~vg~~S~rGs~l~lggasiG~~ssa~p~~~l~G~~s~gi~G~~g~gaS~i~W~~~ed~e~~v~p~~tl~gV~V~~VsfS 2228 (2548)
=.++.+..++..+.+ |-++.+|+..++++.++++....+.+..++++-+
T Consensus 2079 ik~if~k~~~~e~~l-------------------------------G~~g~~~~iike~e~ivaf~~n~~s~~~ia~an~ 2127 (2439)
T KOG1064|consen 2079 IKYIFTKKKEIEADL-------------------------------GYSGGKARIIKESEEIVAFPVNKESVNTIAFANH 2127 (2439)
T ss_pred eeehhccCCcccccc-------------------------------CcCCCceeEeecccceeccCcCcCCcceEEecCC
Confidence 555543322332222 3344457888899999999988888877888878
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCceeEEEe-----------------cc--CCCCC-------------------CCCCC
Q 000054 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYG-----------------VL--PAANV-------------------PPPYA 2270 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~~l~t~~-----------------~l--~ghs~-------------------~~~~H 2270 (2548)
++-+.+-+++.-...+.|-+.+.....+.. .. .++.+ -...+
T Consensus 2128 ~~~qe~dvs~~~~~q~~~w~~ne~d~~~~~~d~~~~~s~~~~l~~~~~~~~~s~~~~~~n~~~~~~tq~~~~~~~~~k~~ 2207 (2439)
T KOG1064|consen 2128 HDVQEFDVSSSLAHQYYWWFGNERDTETKGVDPDANHSPPDALASQSTVGSFSNRFTPSNLPWLGSTQTSRGASVMIKHP 2207 (2439)
T ss_pred CcchheeccchhhhhhhhhhcchhhhhhcCCCcccccCchhhcccccccccccccCCcccCCccccceecccceeEeecc
Confidence 887777766555555544332211100000 00 00000 01122
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEE
Q 000054 2271 LASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVV 2348 (2548)
Q Consensus 2271 ~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrI 2348 (2548)
-..|.++.-+|...+.+||+.||.|++|.+..++.+.... ..|. ..|. .|+.+|+.+..+. .||.+.+
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~r------t~g~-s~vtr~~f~~qGnk~~i~d---~dg~l~l 2277 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFR------TAGN-SRVTRSRFNHQGNKFGIVD---GDGDLSL 2277 (2439)
T ss_pred cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEee------ccCc-chhhhhhhcccCCceeeec---cCCceee
Confidence 3567778888888999999999999999998776432211 1122 4554 3788898888875 7999999
Q ss_pred EECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe---CCCcEEEEeCCccccCceeeeecCCCCCCCccc
Q 000054 2349 WDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGG---KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINT 2425 (2548)
Q Consensus 2349 WDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS---~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~ 2425 (2548)
|.+. .++....++|..+...+.|... .+++++ .++.+.+||.- +...
T Consensus 2278 ~q~~---pk~~~s~qchnk~~~Df~Fi~s---------~~~tag~s~d~~n~~lwDtl-~~~~----------------- 2327 (2439)
T KOG1064|consen 2278 WQAS---PKPYTSWQCHNKALSDFRFIGS---------LLATAGRSSDNRNVCLWDTL-LPPM----------------- 2327 (2439)
T ss_pred cccC---CcceeccccCCccccceeeeeh---------hhhccccCCCCCcccchhcc-cCcc-----------------
Confidence 9986 5788889999999999998754 677765 57899999942 1111
Q ss_pred cccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCc
Q 000054 2426 CAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPS 2505 (2548)
Q Consensus 2426 ~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~t 2505 (2548)
.|-+.++|.+.++++++.|..++|++||.+|.|++||++..+++++++..|.++
T Consensus 2328 --------------------~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~~~~~~------ 2381 (2439)
T KOG1064|consen 2328 --------------------NSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQALDTRE------ 2381 (2439)
T ss_pred --------------------cceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhhhhhhh------
Confidence 112226799999999999999999999999999999999999988774222111
Q ss_pred ccCCCCceeecEEEEEEcCCeEEEEECCCcEEEEECCCC
Q 000054 2506 SRGFGGVVRAGVTDIQVVSRGFLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2506 l~GH~~~V~a~VtsLafSPdGLaSGS~DGtIrIWDL~sg 2544 (2548)
-+++|+..|.|+||++...
T Consensus 2382 --------------------~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2382 --------------------YFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred --------------------eeeccCcccceEEEEcccc
Confidence 1889999999999999764
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=321.51 Aligned_cols=284 Identities=18% Similarity=0.284 Sum_probs=233.7
Q ss_pred CCCCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE
Q 000054 2212 DPPATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA 2289 (2548)
Q Consensus 2212 ~p~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG 2289 (2548)
.+...+.||. |.|++|+|+|..|++|+.|.++|+||+.+..+..+.++ |...|.|++|+|||+.||+|
T Consensus 106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~Kg----------H~~WVlcvawsPDgk~iASG 175 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKG----------HKNWVLCVAWSPDGKKIASG 175 (480)
T ss_pred eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecC----------CccEEEEEEECCCcchhhcc
Confidence 3455666765 89999999999999999999999999999988888754 67999999999999999999
Q ss_pred eCCCcEEEEEcCCCcccccccCccceeccCCcccEEE-------EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee
Q 000054 2290 ALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY-------ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI 2362 (2548)
Q Consensus 2290 S~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a-------fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl 2362 (2548)
+.||+|++||..+|+..- ..+.+|...|.+ ..|.++++|+++ .||.|+|||+.. +.++..+
T Consensus 176 ~~dg~I~lwdpktg~~~g-------~~l~gH~K~It~Lawep~hl~p~~r~las~s---kDg~vrIWd~~~--~~~~~~l 243 (480)
T KOG0271|consen 176 SKDGSIRLWDPKTGQQIG-------RALRGHKKWITALAWEPLHLVPPCRRLASSS---KDGSVRIWDTKL--GTCVRTL 243 (480)
T ss_pred ccCCeEEEecCCCCCccc-------ccccCcccceeEEeecccccCCCccceeccc---CCCCEEEEEccC--ceEEEEe
Confidence 999999999999887542 348899998885 246778899884 999999999976 7899999
Q ss_pred eccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCC-------CCccccccccCCCCC
Q 000054 2363 TCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGG-------SSINTCAHADAQTGS 2435 (2548)
Q Consensus 2363 ~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~-------s~~~~~~vafSpdGk 2435 (2548)
.+|+..|+|+.|-..+ ++.+|+.|++|++|+ ...|++.+.+..+... .......-+|.+.|+
T Consensus 244 sgHT~~VTCvrwGG~g--------liySgS~DrtIkvw~---a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~ 312 (480)
T KOG0271|consen 244 SGHTASVTCVRWGGEG--------LIYSGSQDRTIKVWR---ALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGR 312 (480)
T ss_pred ccCccceEEEEEcCCc--------eEEecCCCceEEEEE---ccchhHHHhhcccchheeeeeccchhhhhccccccccc
Confidence 9999999999997664 999999999999999 5567776665322111 011111223333322
Q ss_pred --------------------------C-ccCCCCCceEEEc---------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Q 000054 2436 --------------------------G-SKPGDQNGMLWYI---------PKAHLGSVTRISTVPNTSLFLTGSKDGDVK 2479 (2548)
Q Consensus 2436 --------------------------~-v~s~D~sv~Iwdi---------~~gH~~~VtsLafSPdG~~LaSGS~DGtIr 2479 (2548)
+ .++.|.++.+|+- +.+|..-|+.+.|+||++++|++|.|..|+
T Consensus 313 ~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVk 392 (480)
T KOG0271|consen 313 KPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVK 392 (480)
T ss_pred cCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccccee
Confidence 2 5667778899973 358999999999999999999999999999
Q ss_pred EEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCcc
Q 000054 2480 LWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2480 IWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~l 2546 (2548)
+||.++|+.+.+| +||- +.|++++|+.|. |++||.|.++|+|++.+..+
T Consensus 393 LW~g~tGk~lasf--------------RGHv----~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl 443 (480)
T KOG0271|consen 393 LWDGRTGKFLASF--------------RGHV----AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL 443 (480)
T ss_pred eeeCCCcchhhhh--------------hhcc----ceeEEEEeccCccEEEEcCCCceEEEEEeeeeee
Confidence 9999999998765 8886 567899999997 88999999999999988754
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=297.55 Aligned_cols=281 Identities=20% Similarity=0.274 Sum_probs=227.9
Q ss_pred CCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-----CCCEE
Q 000054 2214 PATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-----YGHRF 2286 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-----dG~~L 2286 (2548)
..+..+|. |.|++|+|||+.||+|+.||+|++||..+|+++.. +..+|...|++++|.| ..++|
T Consensus 150 ~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~---------~l~gH~K~It~Lawep~hl~p~~r~l 220 (480)
T KOG0271|consen 150 LFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR---------ALRGHKKWITALAWEPLHLVPPCRRL 220 (480)
T ss_pred ceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc---------cccCcccceeEEeecccccCCCccce
Confidence 44555655 89999999999999999999999999999887644 3445779999999976 57899
Q ss_pred EEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCC-EEEEEeccCCCCeEEEEECCCCCCCcceeeecc
Q 000054 2287 ASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSSRASITCH 2365 (2548)
Q Consensus 2287 aSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGs-lLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH 2365 (2548)
++++.||+|+|||+..+.++ .++.+|+..|+|+...|. +++++ |.|++|++|+... +.+.+.+++|
T Consensus 221 as~skDg~vrIWd~~~~~~~--------~~lsgHT~~VTCvrwGG~gliySg---S~DrtIkvw~a~d--G~~~r~lkGH 287 (480)
T KOG0271|consen 221 ASSSKDGSVRIWDTKLGTCV--------RTLSGHTASVTCVRWGGEGLIYSG---SQDRTIKVWRALD--GKLCRELKGH 287 (480)
T ss_pred ecccCCCCEEEEEccCceEE--------EEeccCccceEEEEEcCCceEEec---CCCceEEEEEccc--hhHHHhhccc
Confidence 99999999999999877543 458999999999777655 66665 5999999999976 7899999999
Q ss_pred CCCeEEEEEccCCC---------CC--------------------CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecC
Q 000054 2366 EGGARSISVFDNDL---------GS--------------------GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHS 2416 (2548)
Q Consensus 2366 s~~VtSLafsP~dl---------g~--------------------gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~ 2416 (2548)
...|+.++.+-+.. +. .-.+..+++|+.|+++.+|+-. .+.+++....
T Consensus 288 ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~--~~kkpi~rmt- 364 (480)
T KOG0271|consen 288 AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPF--KSKKPITRMT- 364 (480)
T ss_pred chheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccc--ccccchhhhh-
Confidence 99999998872210 00 0113469999999999999942 2333332221
Q ss_pred CCCCCCccccccccCCCCCC--ccCCCCCceEEE--------cccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 000054 2417 DRGGSSINTCAHADAQTGSG--SKPGDQNGMLWY--------IPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAA 2486 (2548)
Q Consensus 2417 ~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwd--------i~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tg 2486 (2548)
........+.|+||+++ .++-|..+++|+ .+.||-++|+.++|+.|.++|++||.|.+++|||+++.
T Consensus 365 ---gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 365 ---GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred ---chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeee
Confidence 11233467899999999 667889999998 46789999999999999999999999999999999999
Q ss_pred cEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEE
Q 000054 2487 QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2487 ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWD 2540 (2548)
++...+ .||.+.| ..+.|+||| +++|+.|..+++|.
T Consensus 442 Kl~~DL--------------pGh~DEV----f~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 442 KLKQDL--------------PGHADEV----FAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eecccC--------------CCCCceE----EEEEecCCCceeecCCCceEEEeec
Confidence 888765 6887644 667999999 88999999999996
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=291.12 Aligned_cols=264 Identities=22% Similarity=0.276 Sum_probs=231.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC--CCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY--GHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd--G~~LaSGS~DGtVrVWD 2299 (2548)
+..+.|++++..|+||+.+|.++||+..+...+.++++ |.+.|.++.|+|. +..++||+.||++++|+
T Consensus 178 is~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~g----------H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~ 247 (459)
T KOG0272|consen 178 ISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRG----------HTSRVGAAVFHPVDSDLNLATASADGTVKLWK 247 (459)
T ss_pred ceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEec----------cccceeeEEEccCCCccceeeeccCCceeeec
Confidence 46778889999999999999999999999988888754 6699999999996 67899999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
+++.. ..+.+.+|...|. +|+|+|++|+|++ .|.+-++||+++ +..+....||+.+|.+++|+++
T Consensus 248 ~~~e~--------~l~~l~gH~~RVs~VafHPsG~~L~Tas---fD~tWRlWD~~t--k~ElL~QEGHs~~v~~iaf~~D 314 (459)
T KOG0272|consen 248 LSQET--------PLQDLEGHLARVSRVAFHPSGKFLGTAS---FDSTWRLWDLET--KSELLLQEGHSKGVFSIAFQPD 314 (459)
T ss_pred cCCCc--------chhhhhcchhhheeeeecCCCceeeecc---cccchhhccccc--chhhHhhcccccccceeEecCC
Confidence 98653 2345889998887 4999999999995 899999999987 5667777899999999999999
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc------
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI------ 2449 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi------ 2449 (2548)
|.+++|||.|..-+|||+| +|+++..+. ++ ...+-.+.|+|+|.. .+++|++++|||+
T Consensus 315 -------GSL~~tGGlD~~~RvWDlR---tgr~im~L~---gH-~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 315 -------GSLAATGGLDSLGRVWDLR---TGRCIMFLA---GH-IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL 380 (459)
T ss_pred -------CceeeccCccchhheeecc---cCcEEEEec---cc-ccceeeEeECCCceEEeecCCCCcEEEeeecccccc
Confidence 8899999999999999954 799988872 22 223456899999988 7788999999995
Q ss_pred --ccCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe
Q 000054 2450 --PKAHLGSVTRISTVP-NTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG 2526 (2548)
Q Consensus 2450 --~~gH~~~VtsLafSP-dG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG 2526 (2548)
..+|.+-|+.|.|+| .|.+|+|+|.|++++||...+.++++++ .||.+.| .++++++++
T Consensus 381 y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL--------------aGHe~kV----~s~Dis~d~ 442 (459)
T KOG0272|consen 381 YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL--------------AGHEGKV----ISLDISPDS 442 (459)
T ss_pred eecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh--------------cCCccce----EEEEeccCC
Confidence 458999999999999 7899999999999999999999999866 7898765 567999999
Q ss_pred --EEEEECCCcEEEEE
Q 000054 2527 --FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2527 --LaSGS~DGtIrIWD 2540 (2548)
++|+|.|.++|+|.
T Consensus 443 ~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 443 QAIATSSFDRTIKLWR 458 (459)
T ss_pred ceEEEeccCceeeecc
Confidence 99999999999996
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-26 Score=291.34 Aligned_cols=245 Identities=20% Similarity=0.321 Sum_probs=209.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc--------eeEEEe---------cc----CCCCCCCCCCCCCeEEEEEc
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK--------ATATYG---------VL----PAANVPPPYALASISALQFD 2280 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~--------~l~t~~---------~l----~ghs~~~~~H~~~VtsVaFS 2280 (2548)
+.|..|++++..+|.|-.|..|++|.+...+ .+.... .. .+......+|.++|..+.|+
T Consensus 381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFs 460 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFS 460 (707)
T ss_pred ceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeec
Confidence 6889999999999999999999999987321 111110 00 00001245788999999999
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCc
Q 000054 2281 HYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS 2358 (2548)
Q Consensus 2281 PdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~ 2358 (2548)
|+.++|++++.|++||+|.+.+..+. ..+.||..+|+. |+|-|-+||+++ .|++.++|.... ..+
T Consensus 461 Pd~rfLlScSED~svRLWsl~t~s~~--------V~y~GH~~PVwdV~F~P~GyYFatas---~D~tArLWs~d~--~~P 527 (707)
T KOG0263|consen 461 PDRRFLLSCSEDSSVRLWSLDTWSCL--------VIYKGHLAPVWDVQFAPRGYYFATAS---HDQTARLWSTDH--NKP 527 (707)
T ss_pred ccccceeeccCCcceeeeecccceeE--------EEecCCCcceeeEEecCCceEEEecC---CCceeeeeeccc--CCc
Confidence 99999999999999999999987543 347899999985 899999999995 999999999986 688
Q ss_pred ceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCcc
Q 000054 2359 RASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSK 2438 (2548)
Q Consensus 2359 v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~ 2438 (2548)
.+.+.||.+.|.|+.|+|+ +.++++||.|.+||+|| ..+|..++.+
T Consensus 528 lRifaghlsDV~cv~FHPN-------s~Y~aTGSsD~tVRlWD---v~~G~~VRiF------------------------ 573 (707)
T KOG0263|consen 528 LRIFAGHLSDVDCVSFHPN-------SNYVATGSSDRTVRLWD---VSTGNSVRIF------------------------ 573 (707)
T ss_pred hhhhcccccccceEEECCc-------ccccccCCCCceEEEEE---cCCCcEEEEe------------------------
Confidence 9999999999999999999 78999999999999999 5677777666
Q ss_pred CCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEE
Q 000054 2439 PGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVT 2518 (2548)
Q Consensus 2439 s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vt 2518 (2548)
.||.++|.+|+|+|+|++|++|+.||.|++||+.+++++..+ ++|.+ .|.
T Consensus 574 ------------~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l--------------~~Ht~----ti~ 623 (707)
T KOG0263|consen 574 ------------TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL--------------KGHTG----TIY 623 (707)
T ss_pred ------------cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh--------------hcccC----cee
Confidence 899999999999999999999999999999999999998765 78854 467
Q ss_pred EEEEcCCe--EEEEECCCcEEEEECCC
Q 000054 2519 DIQVVSRG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2519 sLafSPdG--LaSGS~DGtIrIWDL~s 2543 (2548)
++.|+.+| ||+||.|.+|++||+..
T Consensus 624 SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 624 SLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred EEEEecCCCEEEecCCCCeEEEEEchh
Confidence 88999999 99999999999999864
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-24 Score=250.04 Aligned_cols=278 Identities=15% Similarity=0.221 Sum_probs=229.9
Q ss_pred CCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC
Q 000054 2214 PATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL 2291 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~ 2291 (2548)
++++.+|. |.++.|++|.++++++++||.+.|||.-+...+..+.. -...|-.++|+|.|+++|.|+-
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl----------~s~WVMtCA~sPSg~~VAcGGL 117 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL----------PSSWVMTCAYSPSGNFVACGGL 117 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec----------CceeEEEEEECCCCCeEEecCc
Confidence 45667766 89999999999999999999999999988776666533 1378999999999999999999
Q ss_pred CCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe
Q 000054 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA 2369 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V 2369 (2548)
|....||++.+...... ....+.+.+|...+.+ |-.| ..|+|+ |.|.++.+||+++ ++.+..|.+|.+.|
T Consensus 118 dN~Csiy~ls~~d~~g~--~~v~r~l~gHtgylScC~f~dD-~~ilT~---SGD~TCalWDie~--g~~~~~f~GH~gDV 189 (343)
T KOG0286|consen 118 DNKCSIYPLSTRDAEGN--VRVSRELAGHTGYLSCCRFLDD-NHILTG---SGDMTCALWDIET--GQQTQVFHGHTGDV 189 (343)
T ss_pred CceeEEEeccccccccc--ceeeeeecCccceeEEEEEcCC-CceEec---CCCceEEEEEccc--ceEEEEecCCcccE
Confidence 99999999985522111 1123458899998875 5554 556665 4799999999987 78899999999999
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEE
Q 000054 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLW 2447 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iw 2447 (2548)
.++.++|.+ ++.+++|+-|+..++||+| .+.+.+.|.. ....+..+.|-|+|.- .++.|.+.++|
T Consensus 190 ~slsl~p~~------~ntFvSg~cD~~aklWD~R---~~~c~qtF~g----hesDINsv~ffP~G~afatGSDD~tcRly 256 (343)
T KOG0286|consen 190 MSLSLSPSD------GNTFVSGGCDKSAKLWDVR---SGQCVQTFEG----HESDINSVRFFPSGDAFATGSDDATCRLY 256 (343)
T ss_pred EEEecCCCC------CCeEEecccccceeeeecc---CcceeEeecc----cccccceEEEccCCCeeeecCCCceeEEE
Confidence 999999965 8999999999999999965 5788888732 2344667888999887 67778889999
Q ss_pred EcccC-------C---CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecE
Q 000054 2448 YIPKA-------H---LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGV 2517 (2548)
Q Consensus 2448 di~~g-------H---~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~V 2517 (2548)
|+... | ..+|++++|+-.|++|++|..|.++.+||.-.++.+..+ .||+++|
T Consensus 257 DlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L--------------~GHeNRv---- 318 (343)
T KOG0286|consen 257 DLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL--------------AGHENRV---- 318 (343)
T ss_pred eecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe--------------eccCCee----
Confidence 96432 2 358999999999999999999999999999988888766 7999776
Q ss_pred EEEEEcCCe--EEEEECCCcEEEEE
Q 000054 2518 TDIQVVSRG--FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2518 tsLafSPdG--LaSGS~DGtIrIWD 2540 (2548)
+++..+||| ++|||-|.++|||.
T Consensus 319 Scl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 319 SCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EEEEECCCCcEEEecchhHheeecC
Confidence 567999999 88999999999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-24 Score=244.34 Aligned_cols=245 Identities=18% Similarity=0.252 Sum_probs=198.3
Q ss_pred CeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 000054 2219 NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2219 gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVW 2298 (2548)
.|.+..+..+++|++.++++.|+++++||+.+|+....|.+ |...|.+++|++|.+.+++|+.|++|++|
T Consensus 63 sH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~G----------H~~dVlsva~s~dn~qivSGSrDkTiklw 132 (315)
T KOG0279|consen 63 SHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVG----------HTKDVLSVAFSTDNRQIVSGSRDKTIKLW 132 (315)
T ss_pred ceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEe----------cCCceEEEEecCCCceeecCCCcceeeee
Confidence 34578888899999999999999999999999988777754 66899999999999999999999999999
Q ss_pred EcCCCcccccccCccceeccCCcccEEE--EcCC--CCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSS--GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpd--GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
++-.+....+. -.++...|.+ |+|+ ..+|++++ .|++|++||++. .+....+.+|++.++.+.+
T Consensus 133 nt~g~ck~t~~-------~~~~~~WVscvrfsP~~~~p~Ivs~s---~DktvKvWnl~~--~~l~~~~~gh~~~v~t~~v 200 (315)
T KOG0279|consen 133 NTLGVCKYTIH-------EDSHREWVSCVRFSPNESNPIIVSAS---WDKTVKVWNLRN--CQLRTTFIGHSGYVNTVTV 200 (315)
T ss_pred eecccEEEEEe-------cCCCcCcEEEEEEcCCCCCcEEEEcc---CCceEEEEccCC--cchhhccccccccEEEEEE
Confidence 99765332211 1122556665 8887 56888875 999999999986 6778889999999999999
Q ss_pred ccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000054 2375 FDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
+|+ |.++++|+.||.+.+|| +..++++..+ +|.
T Consensus 201 SpD-------GslcasGgkdg~~~Lwd---L~~~k~lysl-------------------------------------~a~ 233 (315)
T KOG0279|consen 201 SPD-------GSLCASGGKDGEAMLWD---LNEGKNLYSL-------------------------------------EAF 233 (315)
T ss_pred CCC-------CCEEecCCCCceEEEEE---ccCCceeEec-------------------------------------cCC
Confidence 999 88999999999999999 4556766664 588
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEEC
Q 000054 2455 GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGG 2532 (2548)
Q Consensus 2455 ~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~ 2532 (2548)
..|.+++|+|+...|+.+. +-.|+|||+.++.++.+++..-.+.+ .+.. + ....+++|+++| |++|-.
T Consensus 234 ~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s-----~~~~-~---~~clslaws~dG~tLf~g~t 303 (315)
T KOG0279|consen 234 DIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPS-----SKAG-D---PICLSLAWSADGQTLFAGYT 303 (315)
T ss_pred CeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccc-----cccC-C---cEEEEEEEcCCCcEEEeeec
Confidence 8999999999987777664 45699999999999988843222211 1111 1 125688999999 999999
Q ss_pred CCcEEEEECC
Q 000054 2533 DGSVKLIQLE 2542 (2548)
Q Consensus 2533 DGtIrIWDL~ 2542 (2548)
|+.|++|.+.
T Consensus 304 d~~irv~qv~ 313 (315)
T KOG0279|consen 304 DNVIRVWQVA 313 (315)
T ss_pred CCcEEEEEee
Confidence 9999999975
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-24 Score=242.80 Aligned_cols=260 Identities=17% Similarity=0.271 Sum_probs=210.1
Q ss_pred CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccC
Q 000054 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPM 2311 (2548)
Q Consensus 2232 ~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~ 2311 (2548)
-+|++++.|.+||+|...+|.+..++.- ..+.|..+...|+++.||+|+. -.||+||++++...
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh----------~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~----- 74 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQH----------PDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN----- 74 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEec----------CccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-----
Confidence 3788999999999999999999999842 1367999999999999988775 68999999987532
Q ss_pred ccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEE
Q 000054 2312 ESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIV 2389 (2548)
Q Consensus 2312 ~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLV 2389 (2548)
+..++.+|...|.+ |..+|+..++|| +||+++|||++. ..+.+.+ .|..+|++|..+|+ ...|+
T Consensus 75 -Pv~t~e~h~kNVtaVgF~~dgrWMyTgs---eDgt~kIWdlR~--~~~qR~~-~~~spVn~vvlhpn-------QteLi 140 (311)
T KOG0315|consen 75 -PVATFEGHTKNVTAVGFQCDGRWMYTGS---EDGTVKIWDLRS--LSCQRNY-QHNSPVNTVVLHPN-------QTELI 140 (311)
T ss_pred -ceeEEeccCCceEEEEEeecCeEEEecC---CCceEEEEeccC--cccchhc-cCCCCcceEEecCC-------cceEE
Confidence 34568899888875 888999999986 999999999997 3343444 57799999999999 56899
Q ss_pred EEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCc--cCCCCCceEEEc--------------ccCC
Q 000054 2390 TGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGS--KPGDQNGMLWYI--------------PKAH 2453 (2548)
Q Consensus 2390 SGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v--~s~D~sv~Iwdi--------------~~gH 2453 (2548)
+|..+|.|++||++ ...+...+ -.........++..+||..+ +...|+.++|++ +++|
T Consensus 141 s~dqsg~irvWDl~---~~~c~~~l---iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah 214 (311)
T KOG0315|consen 141 SGDQSGNIRVWDLG---ENSCTHEL---IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH 214 (311)
T ss_pred eecCCCcEEEEEcc---CCcccccc---CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc
Confidence 99999999999965 33333332 12223456778899999984 445566789985 3579
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC-cEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEE
Q 000054 2454 LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAA-QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSC 2530 (2548)
Q Consensus 2454 ~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tg-ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSG 2530 (2548)
++.+..+.++|++++||++|.|.+++||+.++. +.... +.||..++ ++++||.|| |+||
T Consensus 215 ~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~--------------l~gh~rWv----Wdc~FS~dg~YlvTa 276 (311)
T KOG0315|consen 215 NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELV--------------LTGHQRWV----WDCAFSADGEYLVTA 276 (311)
T ss_pred cceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEE--------------eecCCceE----EeeeeccCccEEEec
Confidence 999999999999999999999999999999877 22222 47888666 566999999 9999
Q ss_pred ECCCcEEEEECCCCc
Q 000054 2531 GGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2531 S~DGtIrIWDL~sg~ 2545 (2548)
+.|+.+|+|+++.+.
T Consensus 277 ssd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 277 SSDHTARLWDLSAGK 291 (311)
T ss_pred CCCCceeecccccCc
Confidence 999999999998874
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=270.92 Aligned_cols=246 Identities=20% Similarity=0.274 Sum_probs=203.0
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCcee-EEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKAT-ATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l-~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DGtVrVWD 2299 (2548)
+.+++...+|.+|+||+.|.+|++|.++++... ..+. ...+|.+.|.+++++.. ..+|+++|.|+++++|+
T Consensus 368 vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a-------~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~ 440 (775)
T KOG0319|consen 368 VLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVA-------QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWD 440 (775)
T ss_pred eeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhh-------hhcccccccceeeecccCccEEEEecCCceEEEec
Confidence 355554467789999999999999998544322 2222 23457799999999774 56899999999999999
Q ss_pred cCCCccccc-ccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEcc
Q 000054 2300 LEVGGRSNV-RPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2300 l~tgk~i~i-~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
+...+.... .......+...|..+|.+ ++|+.++||||+ .|++.+||++.. .....++.||..+|++|.|++
T Consensus 441 l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S---qDktaKiW~le~--~~l~~vLsGH~RGvw~V~Fs~ 515 (775)
T KOG0319|consen 441 LPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGS---QDKTAKIWDLEQ--LRLLGVLSGHTRGVWCVSFSK 515 (775)
T ss_pred CCCcccccccceehhhHHHHhhcccccceEecCCCceEEecc---cccceeeecccC--ceEEEEeeCCccceEEEEecc
Confidence 986332211 111122345678888875 899999999985 999999999974 778899999999999999999
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCC
Q 000054 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGS 2456 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~ 2456 (2548)
. .+.++|+|.|++|+||. +.+..|++++ .||+..
T Consensus 516 ~-------dq~laT~SgD~TvKIW~---is~fSClkT~------------------------------------eGH~~a 549 (775)
T KOG0319|consen 516 N-------DQLLATCSGDKTVKIWS---ISTFSCLKTF------------------------------------EGHTSA 549 (775)
T ss_pred c-------cceeEeccCCceEEEEE---eccceeeeee------------------------------------cCccce
Confidence 8 57999999999999999 7788999998 899999
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCC
Q 000054 2457 VTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDG 2534 (2548)
Q Consensus 2457 VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DG 2534 (2548)
|..+.|-.+|+.|++++.||.|++|++++++++.++ .+|.+.||+. +.+|.+ ++|||+||
T Consensus 550 Vlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl--------------D~H~DrvWaL----~~~~~~~~~~tgg~Dg 611 (775)
T KOG0319|consen 550 VLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL--------------DAHNDRVWAL----SVSPLLDMFVTGGGDG 611 (775)
T ss_pred eEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh--------------hhccceeEEE----eecCccceeEecCCCe
Confidence 999999999999999999999999999999999876 7899887654 788888 88999999
Q ss_pred cEEEEECCC
Q 000054 2535 SVKLIQLED 2543 (2548)
Q Consensus 2535 tIrIWDL~s 2543 (2548)
.|.+|.=.+
T Consensus 612 ~i~~wkD~T 620 (775)
T KOG0319|consen 612 RIIFWKDVT 620 (775)
T ss_pred EEEEeecCc
Confidence 999997543
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.9e-25 Score=262.14 Aligned_cols=232 Identities=21% Similarity=0.264 Sum_probs=197.7
Q ss_pred CCccCCeE--EEEEEEcCC--CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE
Q 000054 2214 PATVENIS--TRAFSSHPL--RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA 2289 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPd--G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG 2289 (2548)
..++.+|. +.++.|||. +..+|||+.||+|++|++.+...+..+. +|...|..++|+|+|++|+|+
T Consensus 210 ~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~----------gH~~RVs~VafHPsG~~L~Ta 279 (459)
T KOG0272|consen 210 LQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLE----------GHLARVSRVAFHPSGKFLGTA 279 (459)
T ss_pred eEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhh----------cchhhheeeeecCCCceeeec
Confidence 55677777 899999997 6689999999999999999887777664 366899999999999999999
Q ss_pred eCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCC
Q 000054 2290 ALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG 2367 (2548)
Q Consensus 2290 S~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~ 2367 (2548)
+.|.+-++||++++..... ..||...|.+ |.+||.++++|| .|..-+|||+++ +.++..+.+|..
T Consensus 280 sfD~tWRlWD~~tk~ElL~--------QEGHs~~v~~iaf~~DGSL~~tGG---lD~~~RvWDlRt--gr~im~L~gH~k 346 (459)
T KOG0272|consen 280 SFDSTWRLWDLETKSELLL--------QEGHSKGVFSIAFQPDGSLAATGG---LDSLGRVWDLRT--GRCIMFLAGHIK 346 (459)
T ss_pred ccccchhhcccccchhhHh--------hcccccccceeEecCCCceeeccC---ccchhheeeccc--CcEEEEeccccc
Confidence 9999999999998865432 5789998874 899999999998 899999999998 899999999999
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCC-CCC--ccCCCCCc
Q 000054 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQT-GSG--SKPGDQNG 2444 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpd-Gk~--v~s~D~sv 2444 (2548)
.|.+|+|+|+ |..|+|||.|++++|||+|+. +.+.++ ..+.. ..+.+-|+|. |.+ .++.|+++
T Consensus 347 ~I~~V~fsPN-------Gy~lATgs~Dnt~kVWDLR~r---~~ly~i---pAH~n-lVS~Vk~~p~~g~fL~TasyD~t~ 412 (459)
T KOG0272|consen 347 EILSVAFSPN-------GYHLATGSSDNTCKVWDLRMR---SELYTI---PAHSN-LVSQVKYSPQEGYFLVTASYDNTV 412 (459)
T ss_pred ceeeEeECCC-------ceEEeecCCCCcEEEeeeccc---ccceec---ccccc-hhhheEecccCCeEEEEcccCcce
Confidence 9999999999 789999999999999998852 223333 22222 2345667774 555 78899999
Q ss_pred eEEE--------cccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000054 2445 MLWY--------IPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWD 2482 (2548)
Q Consensus 2445 ~Iwd--------i~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWD 2482 (2548)
+||. .+.||++.|.++..+|++++++|++.|.++++|.
T Consensus 413 kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 413 KIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 9997 3569999999999999999999999999999995
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-24 Score=249.78 Aligned_cols=243 Identities=21% Similarity=0.386 Sum_probs=211.5
Q ss_pred CccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000054 2215 ATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2215 ~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
+.+.+|. |+|+++.|.+.++++|+.|++++|||+.+|+...++. +|...|..+++++...++++++.|
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt----------Ghi~~vr~vavS~rHpYlFs~ged 214 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT----------GHIETVRGVAVSKRHPYLFSAGED 214 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec----------chhheeeeeeecccCceEEEecCC
Confidence 3455555 7999999999999999999999999999999888863 366899999999999999999999
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeE
Q 000054 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGAR 2370 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~Vt 2370 (2548)
+.|+.||++..+.+. .+.||-..|.+ ..|.-..|++|| .|.++++||+++ ...++.+.||...|.
T Consensus 215 k~VKCwDLe~nkvIR--------~YhGHlS~V~~L~lhPTldvl~t~g---rDst~RvWDiRt--r~~V~~l~GH~~~V~ 281 (460)
T KOG0285|consen 215 KQVKCWDLEYNKVIR--------HYHGHLSGVYCLDLHPTLDVLVTGG---RDSTIRVWDIRT--RASVHVLSGHTNPVA 281 (460)
T ss_pred CeeEEEechhhhhHH--------HhccccceeEEEeccccceeEEecC---CcceEEEeeecc--cceEEEecCCCCcce
Confidence 999999999776432 37899999987 567788999997 999999999998 678999999999999
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcc
Q 000054 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP 2450 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~ 2450 (2548)
+|.+.|. .+.+++|+.|++|++||+| .|+...++
T Consensus 282 ~V~~~~~-------dpqvit~S~D~tvrlWDl~---agkt~~tl------------------------------------ 315 (460)
T KOG0285|consen 282 SVMCQPT-------DPQVITGSHDSTVRLWDLR---AGKTMITL------------------------------------ 315 (460)
T ss_pred eEEeecC-------CCceEEecCCceEEEeeec---cCceeEee------------------------------------
Confidence 9999988 5799999999999999955 46666665
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEE
Q 000054 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLS 2529 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaS 2529 (2548)
..|...|.+++.+|....||++|.| .|+-|++..|..++.+ .||... +..++...|| +++
T Consensus 316 t~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nl--------------sgh~~i----intl~~nsD~v~~~ 376 (460)
T KOG0285|consen 316 THHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNL--------------SGHNAI----INTLSVNSDGVLVS 376 (460)
T ss_pred ecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcc--------------ccccce----eeeeeeccCceEEE
Confidence 6799999999999999999999988 6899999998887644 778754 4566899999 899
Q ss_pred EECCCcEEEEECCCCc
Q 000054 2530 CGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2530 GS~DGtIrIWDL~sg~ 2545 (2548)
|++.|.|.+||.++|.
T Consensus 377 G~dng~~~fwdwksg~ 392 (460)
T KOG0285|consen 377 GGDNGSIMFWDWKSGH 392 (460)
T ss_pred cCCceEEEEEecCcCc
Confidence 9999999999998874
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-23 Score=238.47 Aligned_cols=245 Identities=22% Similarity=0.336 Sum_probs=198.8
Q ss_pred CCccCCeE--EEEEEEcCC-CCEEEEEECCCeEEEEEcCCC-----ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCE
Q 000054 2214 PATVENIS--TRAFSSHPL-RPFFLVGSSNTHIYLWEFGKD-----KATATYGVLPAANVPPPYALASISALQFDHYGHR 2285 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPd-G~~LASGS~DGsVrLWDl~tg-----~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~ 2285 (2548)
..++++|. |..++..+. ...+++++.|.++.+|++... ..++.+ .+|...|..+..+++|++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~----------~GHsH~v~dv~~s~dg~~ 77 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRL----------TGHSHFVSDVVLSSDGNF 77 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeee----------eccceEecceEEccCCce
Confidence 34556665 677777676 457889999999999998753 334443 336688999999999999
Q ss_pred EEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee
Q 000054 2286 FASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT 2363 (2548)
Q Consensus 2286 LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~ 2363 (2548)
.++++.||++++||+.+++.. +.|.+|..+|.+ +++|.+.+++| |.|++|++|++. +.+..++.
T Consensus 78 alS~swD~~lrlWDl~~g~~t--------~~f~GH~~dVlsva~s~dn~qivSG---SrDkTiklwnt~---g~ck~t~~ 143 (315)
T KOG0279|consen 78 ALSASWDGTLRLWDLATGEST--------RRFVGHTKDVLSVAFSTDNRQIVSG---SRDKTIKLWNTL---GVCKYTIH 143 (315)
T ss_pred EEeccccceEEEEEecCCcEE--------EEEEecCCceEEEEecCCCceeecC---CCcceeeeeeec---ccEEEEEe
Confidence 999999999999999988532 348899999985 89999999998 499999999997 45666665
Q ss_pred cc--CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCC
Q 000054 2364 CH--EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGD 2441 (2548)
Q Consensus 2364 gH--s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D 2441 (2548)
.+ .+.|.|+.|+|+. ..+.|+++|.|++|++||++. .+....
T Consensus 144 ~~~~~~WVscvrfsP~~-----~~p~Ivs~s~DktvKvWnl~~---~~l~~~---------------------------- 187 (315)
T KOG0279|consen 144 EDSHREWVSCVRFSPNE-----SNPIIVSASWDKTVKVWNLRN---CQLRTT---------------------------- 187 (315)
T ss_pred cCCCcCcEEEEEEcCCC-----CCcEEEEccCCceEEEEccCC---cchhhc----------------------------
Confidence 44 7899999999994 267999999999999999653 233222
Q ss_pred CCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEE
Q 000054 2442 QNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQ 2521 (2548)
Q Consensus 2442 ~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLa 2521 (2548)
+.||.+.++.++++|||.+.++|+.||.+.+||++.++.++++ +|. ..|.+++
T Consensus 188 --------~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl---------------~a~----~~v~sl~ 240 (315)
T KOG0279|consen 188 --------FIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL---------------EAF----DIVNSLC 240 (315)
T ss_pred --------cccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec---------------cCC----CeEeeEE
Confidence 2789999999999999999999999999999999999998877 343 3467779
Q ss_pred EcCCe-EEEEECCCcEEEEECCCCc
Q 000054 2522 VVSRG-FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2522 fSPdG-LaSGS~DGtIrIWDL~sg~ 2545 (2548)
|+|+. -+....+..|+|||++++.
T Consensus 241 fspnrywL~~at~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 241 FSPNRYWLCAATATSIKIWDLESKA 265 (315)
T ss_pred ecCCceeEeeccCCceEEEeccchh
Confidence 99999 4555666779999998864
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=251.12 Aligned_cols=247 Identities=20% Similarity=0.351 Sum_probs=207.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+++++|+.+|..||+|+.||.++||+.. |..+.++. .|.++|.++.|+..|+++++++.||++.+||.-
T Consensus 238 VT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~----------~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~ 306 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLG----------QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAH 306 (524)
T ss_pred cceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhh----------ccCCceEEEEEcCCCCEEEeccCCccEEEEecc
Confidence 6999999999999999999999999965 44444442 377999999999999999999999999999986
Q ss_pred CCccccc---------------------------------ccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeE
Q 000054 2302 VGGRSNV---------------------------------RPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2302 tgk~i~i---------------------------------~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtV 2346 (2548)
++..... ....+..++.+|.+.|.+ |+|.|.+|+++ |+|+++
T Consensus 307 ~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~---SdD~Tl 383 (524)
T KOG0273|consen 307 TGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASC---SDDGTL 383 (524)
T ss_pred CceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEe---cCCCee
Confidence 6531111 111345667889999987 89999999998 499999
Q ss_pred EEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC--CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcc
Q 000054 2347 VVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS--GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSIN 2424 (2548)
Q Consensus 2347 rIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~--gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~ 2424 (2548)
+||.... ..+++.+.+|+..|..+.|+|.+-+. .-.+..+++++.|++|++|| ...+.++..+
T Consensus 384 kiWs~~~--~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwd---v~~gv~i~~f---------- 448 (524)
T KOG0273|consen 384 KIWSMGQ--SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWD---VESGVPIHTL---------- 448 (524)
T ss_pred EeeecCC--CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEE---ccCCceeEee----------
Confidence 9999865 67899999999999999999984111 11345899999999999999 6778888776
Q ss_pred ccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccC
Q 000054 2425 TCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQP 2504 (2548)
Q Consensus 2425 ~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~ 2504 (2548)
..|..+|++|+|+|+|+++|+|+.||.|.+|+.+++++++.+
T Consensus 449 --------------------------~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~------------ 490 (524)
T KOG0273|consen 449 --------------------------MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY------------ 490 (524)
T ss_pred --------------------------ccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEee------------
Confidence 789999999999999999999999999999999999999877
Q ss_pred cccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECC
Q 000054 2505 SSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2505 tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
++- ..|..+.|+.+| +..+-.||.+.+-|+.
T Consensus 491 --~~~-----~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 491 --QGT-----GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred --cCC-----CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 233 337888999999 7788899999998874
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.6e-24 Score=248.72 Aligned_cols=246 Identities=18% Similarity=0.316 Sum_probs=211.8
Q ss_pred CCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC
Q 000054 2214 PATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL 2291 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~ 2291 (2548)
...+.+++ +..+-|||+-...++++.|++|++||..+|+....++ +|.+.|.+|.|+..|+++++++.
T Consensus 101 ~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~Lr----------GHt~sv~di~~~a~Gk~l~tcSs 170 (406)
T KOG0295|consen 101 VQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLR----------GHTDSVFDISFDASGKYLATCSS 170 (406)
T ss_pred hhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhh----------ccccceeEEEEecCccEEEecCC
Confidence 34455555 7889999999999999999999999999999866654 36688999999999999999999
Q ss_pred CCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe
Q 000054 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA 2369 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V 2369 (2548)
|=.+++||.++- +...+...+|...|. ++-|.|.+|++++ .|.+|+.|++.+ +-++.++.+|...|
T Consensus 171 Dl~~~LWd~~~~-------~~c~ks~~gh~h~vS~V~f~P~gd~ilS~s---rD~tik~We~~t--g~cv~t~~~h~ewv 238 (406)
T KOG0295|consen 171 DLSAKLWDFDTF-------FRCIKSLIGHEHGVSSVFFLPLGDHILSCS---RDNTIKAWECDT--GYCVKTFPGHSEWV 238 (406)
T ss_pred ccchhheeHHHH-------HHHHHHhcCcccceeeEEEEecCCeeeecc---cccceeEEeccc--ceeEEeccCchHhE
Confidence 999999999753 112334667777665 4778999999995 999999999987 78999999999999
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEc
Q 000054 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYI 2449 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi 2449 (2548)
..++.+.+ |.++++++.|.+|++|- ..++++...+
T Consensus 239 r~v~v~~D-------Gti~As~s~dqtl~vW~---~~t~~~k~~l----------------------------------- 273 (406)
T KOG0295|consen 239 RMVRVNQD-------GTIIASCSNDQTLRVWV---VATKQCKAEL----------------------------------- 273 (406)
T ss_pred EEEEecCC-------eeEEEecCCCceEEEEE---eccchhhhhh-----------------------------------
Confidence 99999888 88999999999999999 6667666555
Q ss_pred ccCCCCCEEEEEEeCC---------------CCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCcee
Q 000054 2450 PKAHLGSVTRISTVPN---------------TSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVR 2514 (2548)
Q Consensus 2450 ~~gH~~~VtsLafSPd---------------G~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~ 2514 (2548)
.+|+.+|.+++|.|. ++++++|+.|++|++||+.+|.++.++ .||.++|+
T Consensus 274 -R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL--------------~ghdnwVr 338 (406)
T KOG0295|consen 274 -REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL--------------VGHDNWVR 338 (406)
T ss_pred -hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE--------------ecccceee
Confidence 779999999999773 269999999999999999999999887 78997774
Q ss_pred ecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2515 AGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2515 a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+++|+|.| |+||.+|+++++||+.+++
T Consensus 339 ----~~af~p~Gkyi~ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 339 ----GVAFSPGGKYILSCADDKTLRVWDLKNLQ 367 (406)
T ss_pred ----eeEEcCCCeEEEEEecCCcEEEEEeccce
Confidence 55999999 8999999999999999875
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-24 Score=259.92 Aligned_cols=273 Identities=16% Similarity=0.239 Sum_probs=217.4
Q ss_pred CccCCeE--EEEEEEcC-CCCEEEEEECCCeEEEEEcCC-CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe
Q 000054 2215 ATVENIS--TRAFSSHP-LRPFFLVGSSNTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA 2290 (2548)
Q Consensus 2215 ~tl~gV~--V~~VsfSP-dG~~LASGS~DGsVrLWDl~t-g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS 2290 (2548)
.++.+|+ |.++.|.| .+.+|++|+.|+.|+||++-. ++++++|. +|..+|.+++|+++|..|+|++
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~----------gH~k~Vrd~~~s~~g~~fLS~s 277 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK----------GHRKPVRDASFNNCGTSFLSAS 277 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh----------cchhhhhhhhccccCCeeeeee
Confidence 3456666 78999999 899999999999999999886 77777764 3669999999999999999999
Q ss_pred CCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCC-CEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe
Q 000054 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSG-SVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA 2369 (2548)
Q Consensus 2291 ~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdG-slLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V 2369 (2548)
.|++|++||+++|++.... ..++.-.+..+.|++ +.+++|+ .|+.|+.||+++ ++.++.+..|-+.|
T Consensus 278 fD~~lKlwDtETG~~~~~f-------~~~~~~~cvkf~pd~~n~fl~G~---sd~ki~~wDiRs--~kvvqeYd~hLg~i 345 (503)
T KOG0282|consen 278 FDRFLKLWDTETGQVLSRF-------HLDKVPTCVKFHPDNQNIFLVGG---SDKKIRQWDIRS--GKVVQEYDRHLGAI 345 (503)
T ss_pred cceeeeeeccccceEEEEE-------ecCCCceeeecCCCCCcEEEEec---CCCcEEEEeccc--hHHHHHHHhhhhhe
Confidence 9999999999999765321 223333444588888 6777776 799999999998 67889999999999
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCcc--CCCCCceEE
Q 000054 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSK--PGDQNGMLW 2447 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~--s~D~sv~Iw 2447 (2548)
..+.|.+. +..+++.+.|++++||+.+. +-.++.. .........++...|++++.+ +.++.+.++
T Consensus 346 ~~i~F~~~-------g~rFissSDdks~riWe~~~---~v~ik~i---~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~if 412 (503)
T KOG0282|consen 346 LDITFVDE-------GRRFISSSDDKSVRIWENRI---PVPIKNI---ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIF 412 (503)
T ss_pred eeeEEccC-------CceEeeeccCccEEEEEcCC---Cccchhh---cchhhccCcceecCCCCCeehhhccCceEEEE
Confidence 99999998 78999999999999999653 2222221 111223345678889988833 455666666
Q ss_pred E-----------cccCCCC--CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCcee
Q 000054 2448 Y-----------IPKAHLG--SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVR 2514 (2548)
Q Consensus 2448 d-----------i~~gH~~--~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~ 2514 (2548)
. .++||.. .-..+.|+|||++|++|+.||.+.+||.++-+++..+ ++|.+
T Consensus 413 s~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~l--------------kah~~--- 475 (503)
T KOG0282|consen 413 STVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKL--------------KAHDQ--- 475 (503)
T ss_pred ecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhcc--------------ccCCc---
Confidence 5 3567754 4567889999999999999999999999998888766 67754
Q ss_pred ecEEEEEEcCCe---EEEEECCCcEEEEE
Q 000054 2515 AGVTDIQVVSRG---FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2515 a~VtsLafSPdG---LaSGS~DGtIrIWD 2540 (2548)
++..+.|+|.. +||||.||.|++|+
T Consensus 476 -~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 476 -PCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred -ceEEEEecCCCcceeEecccCceeEecC
Confidence 35667999987 99999999999996
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-22 Score=231.41 Aligned_cols=264 Identities=21% Similarity=0.388 Sum_probs=213.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+|+++++++|+.||.|++|++.+++....+.. |...+..+.|+++++++++++.||.|++||+.
T Consensus 12 i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~ 81 (289)
T cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG----------HTGPVRDVAASADGTYLASGSSDKTIRLWDLE 81 (289)
T ss_pred EEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEec----------CCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence 78999999999999999999999999998875555432 44778999999999999999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
+++.. ..+..|...+.+ ++++++++++++ .|+.|.+||++. .+....+..|.+.+.++.|+|+
T Consensus 82 ~~~~~--------~~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~i~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~-- 146 (289)
T cd00200 82 TGECV--------RTLTGHTSYVSSVAFSPDGRILSSSS---RDKTIKVWDVET--GKCLTTLRGHTDWVNSVAFSPD-- 146 (289)
T ss_pred cccce--------EEEeccCCcEEEEEEcCCCCEEEEec---CCCeEEEEECCC--cEEEEEeccCCCcEEEEEEcCc--
Confidence 75322 225566666654 778888888874 699999999985 5667778889999999999997
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEcc-------
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIP------- 2450 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~------- 2450 (2548)
+.++++++.||.|++||++ +++.+..+. ........+.++++++. +++.++.+++|+..
T Consensus 147 -----~~~l~~~~~~~~i~i~d~~---~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 214 (289)
T cd00200 147 -----GTFVASSSQDGTIKLWDLR---TGKCVATLT----GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT 214 (289)
T ss_pred -----CCEEEEEcCCCcEEEEEcc---ccccceeEe----cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecc
Confidence 5688888889999999954 455554442 11123556788899855 56668899999853
Q ss_pred -cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--E
Q 000054 2451 -KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--F 2527 (2548)
Q Consensus 2451 -~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--L 2527 (2548)
..|...|.+++|+|++.++++++.||.|++||+.+++.+..+ .+|.. .+.+++|+|++ +
T Consensus 215 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~--------------~~~~~----~i~~~~~~~~~~~l 276 (289)
T cd00200 215 LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL--------------SGHTN----SVTSLAWSPDGKRL 276 (289)
T ss_pred hhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEc--------------cccCC----cEEEEEECCCCCEE
Confidence 368889999999999999999988999999999998888766 34543 35778999987 8
Q ss_pred EEEECCCcEEEEE
Q 000054 2528 LSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2528 aSGS~DGtIrIWD 2540 (2548)
++++.||.|++|+
T Consensus 277 ~~~~~d~~i~iw~ 289 (289)
T cd00200 277 ASGSADGTIRIWD 289 (289)
T ss_pred EEecCCCeEEecC
Confidence 9999999999996
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=254.57 Aligned_cols=270 Identities=20% Similarity=0.305 Sum_probs=225.4
Q ss_pred eEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC-CcEEEE
Q 000054 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD-GTVCTW 2298 (2548)
Q Consensus 2220 V~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D-GtVrVW 2298 (2548)
..+.|.+||+..+.|++|=..|...+|++..-..++.+..- ...|..+.|+..|+.++.|+.. |.+-||
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis----------~~~I~t~~~N~tGDWiA~g~~klgQLlVw 335 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSIS----------DQKILTVSFNSTGDWIAFGCSKLGQLLVW 335 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecc----------cceeeEEEecccCCEEEEcCCccceEEEE
Confidence 45899999999999999999999999999999988887641 2679999999999999998776 899999
Q ss_pred EcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEcc
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
++.+..-+ ...++|...+.+ ++|||+++|||+ +||.|+|||... +-|+.+|..|+.+|+.+.|+.
T Consensus 336 eWqsEsYV--------lKQQgH~~~i~~l~YSpDgq~iaTG~---eDgKVKvWn~~S--gfC~vTFteHts~Vt~v~f~~ 402 (893)
T KOG0291|consen 336 EWQSESYV--------LKQQGHSDRITSLAYSPDGQLIATGA---EDGKVKVWNTQS--GFCFVTFTEHTSGVTAVQFTA 402 (893)
T ss_pred Eeecccee--------eeccccccceeeEEECCCCcEEEecc---CCCcEEEEeccC--ceEEEEeccCCCceEEEEEEe
Confidence 99865422 225789888875 899999999997 999999999986 779999999999999999998
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCC---CceEE------
Q 000054 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQ---NGMLW------ 2447 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~---sv~Iw------ 2447 (2548)
. ++.+++.+.||+|+.|| +...++.+++. ........+++..|.|..+..++. .+.+|
T Consensus 403 ~-------g~~llssSLDGtVRAwD---lkRYrNfRTft---~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq 469 (893)
T KOG0291|consen 403 R-------GNVLLSSSLDGTVRAWD---LKRYRNFRTFT---SPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ 469 (893)
T ss_pred c-------CCEEEEeecCCeEEeee---ecccceeeeec---CCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe
Confidence 8 78999999999999999 56677777772 233344567788888998555443 34555
Q ss_pred --EcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC-cEEEEecccccccccccCcccCCCCceeecEEEEEEcC
Q 000054 2448 --YIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAA-QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVS 2524 (2548)
Q Consensus 2448 --di~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tg-ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSP 2524 (2548)
|++.||+++|.+++|+|++..|++||.|.+||+||+-.. ..+.+++ +...|..++|+|
T Consensus 470 llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-------------------i~sdvl~vsfrP 530 (893)
T KOG0291|consen 470 LLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-------------------IRSDVLAVSFRP 530 (893)
T ss_pred eeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-------------------eccceeEEEEcC
Confidence 467899999999999999999999999999999998643 3344441 123467889999
Q ss_pred Ce--EEEEECCCcEEEEECCCC
Q 000054 2525 RG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2525 dG--LaSGS~DGtIrIWDL~sg 2544 (2548)
+| ++++.-||.|.+||...+
T Consensus 531 dG~elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 531 DGKELAVATLDGQITFFDIKEA 552 (893)
T ss_pred CCCeEEEEEecceEEEEEhhhc
Confidence 99 999999999999999765
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-23 Score=259.42 Aligned_cols=275 Identities=18% Similarity=0.274 Sum_probs=222.7
Q ss_pred EEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
++..++|||..++++++--.|.|++||.+.+..+..|.. |.++|..++|+|++..|++|+.|..|+||+.
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFde----------HdGpVRgv~FH~~qplFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDE----------HDGPVRGVDFHPTQPLFVSGGDDYKIKVWNY 80 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhc----------cCCccceeeecCCCCeEEecCCccEEEEEec
Confidence 368999999999999999999999999999998888754 6699999999999999999999999999999
Q ss_pred CCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCC
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
.+.+++ .++.||-+.|. +|++.--.|+++ |+|.+|+||+..+ .+++..+.||...|.|..|+|.
T Consensus 81 k~rrcl--------ftL~GHlDYVRt~~FHheyPWIlSA---SDDQTIrIWNwqs--r~~iavltGHnHYVMcAqFhpt- 146 (1202)
T KOG0292|consen 81 KTRRCL--------FTLLGHLDYVRTVFFHHEYPWILSA---SDDQTIRIWNWQS--RKCIAVLTGHNHYVMCAQFHPT- 146 (1202)
T ss_pred ccceeh--------hhhccccceeEEeeccCCCceEEEc---cCCCeEEEEeccC--CceEEEEecCceEEEeeccCCc-
Confidence 877654 34789999886 478888899998 4999999999987 7899999999999999999997
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCCccccCceee-----e---------ecC--C------CCCCCccccccccCCCCCC
Q 000054 2379 LGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKK-----H---------KHS--D------RGGSSINTCAHADAQTGSG 2436 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~-----t---------l~~--~------~~~s~~~~~~vafSpdGk~ 2436 (2548)
..+++|+|-|.+||+||+..+..+...- . +.. + -....-...-++|.|.-..
T Consensus 147 ------EDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpl 220 (1202)
T KOG0292|consen 147 ------EDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPL 220 (1202)
T ss_pred ------cceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcce
Confidence 5699999999999999984321111000 0 000 0 0001112234567776555
Q ss_pred --ccCCCCCceEEEc----------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccC
Q 000054 2437 --SKPGDQNGMLWYI----------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQP 2504 (2548)
Q Consensus 2437 --v~s~D~sv~Iwdi----------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~ 2504 (2548)
+++.|+.+++|+. ..||.+.|.++-|+|..+++++.|+|++|+|||+..++.+++|..+|.
T Consensus 221 iVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrend------- 293 (1202)
T KOG0292|consen 221 IVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREND------- 293 (1202)
T ss_pred EEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCC-------
Confidence 6778888999974 468999999999999999999999999999999999999998842222
Q ss_pred cccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCC
Q 000054 2505 SSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2505 tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~s 2543 (2548)
+ .+.++.+|.. |.++|.|+-+.+|.++.
T Consensus 294 -------R----FW~laahP~lNLfAAgHDsGm~VFkleR 322 (1202)
T KOG0292|consen 294 -------R----FWILAAHPELNLFAAGHDSGMIVFKLER 322 (1202)
T ss_pred -------e----EEEEEecCCcceeeeecCCceEEEEEcc
Confidence 2 3566889988 88888999888998874
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.5e-24 Score=251.60 Aligned_cols=266 Identities=19% Similarity=0.260 Sum_probs=216.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|..+.|.|+|+.|++|+..|.+.+|+..+-..... ++ .|...|+++.|+++|.++++|+.+|.|++|+.+
T Consensus 99 V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEti---lQ-------aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn 168 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETI---LQ-------AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN 168 (464)
T ss_pred eeeEEEcCCCceeEeecccccEEEecCceeeHHHH---hh-------hhcccceeEEEccCCCEEEEcCCCceEEecccc
Confidence 68899999999999999999999999643211111 12 256999999999999999999999999999987
Q ss_pred CCcccccccCccceeccCCc-ccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHA-MDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~-~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
.... +.+.+|. ..|. +|+|+...|+++ |+||+|+|||... .+....+.+|.-.|.++.|+|.
T Consensus 169 mnnV---------k~~~ahh~eaIRdlafSpnDskF~t~---SdDg~ikiWdf~~--~kee~vL~GHgwdVksvdWHP~- 233 (464)
T KOG0284|consen 169 MNNV---------KIIQAHHAEAIRDLAFSPNDSKFLTC---SDDGTIKIWDFRM--PKEERVLRGHGWDVKSVDWHPT- 233 (464)
T ss_pred hhhh---------HHhhHhhhhhhheeccCCCCceeEEe---cCCCeEEEEeccC--CchhheeccCCCCcceeccCCc-
Confidence 5421 1244444 5665 489999999998 4999999999987 4555667999999999999999
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc-------
Q 000054 2379 LGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI------- 2449 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi------- 2449 (2548)
..++++||.|..|++|| ..+|.|+.+++.. . .....+.|++++.+ .++.|..++++|+
T Consensus 234 ------kgLiasgskDnlVKlWD---prSg~cl~tlh~H---K-ntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~ 300 (464)
T KOG0284|consen 234 ------KGLIASGSKDNLVKLWD---PRSGSCLATLHGH---K-NTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF 300 (464)
T ss_pred ------cceeEEccCCceeEeec---CCCcchhhhhhhc---c-ceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHH
Confidence 56999999999999999 6789988776321 1 22356789999988 6778888999996
Q ss_pred -ccCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-
Q 000054 2450 -PKAHLGSVTRISTVP-NTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG- 2526 (2548)
Q Consensus 2450 -~~gH~~~VtsLafSP-dG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG- 2526 (2548)
+++|+..|++++|+| ...+|.+|+.||.|..|.+...+++..++ .+|.+ .|++++|+|-|
T Consensus 301 ~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-------------~AHd~----~iwsl~~hPlGh 363 (464)
T KOG0284|consen 301 TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-------------PAHDG----EIWSLAYHPLGH 363 (464)
T ss_pred HhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCC-------------ccccc----ceeeeeccccce
Confidence 468999999999999 67899999999999999998767766553 45664 45778999999
Q ss_pred -EEEEECCCcEEEEECC
Q 000054 2527 -FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2527 -LaSGS~DGtIrIWDL~ 2542 (2548)
|++|+.|.++|+|.-.
T Consensus 364 il~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 364 ILATGSNDRTVRFWTRN 380 (464)
T ss_pred eEeecCCCcceeeeccC
Confidence 8899999999999753
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.8e-22 Score=239.05 Aligned_cols=292 Identities=14% Similarity=0.182 Sum_probs=224.6
Q ss_pred ccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000054 2216 TVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
+++.|. |.|+.|+|||.++++.+.||.|.+||-.+|+.+..+.. ...|.+.|.++.|+||+..++|++.|.
T Consensus 185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~-------~~aHkGsIfalsWsPDs~~~~T~SaDk 257 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELED-------SDAHKGSIFALSWSPDSTQFLTVSADK 257 (603)
T ss_pred cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecC-------CCCccccEEEEEECCCCceEEEecCCc
Confidence 344444 89999999999999999999999999999999988864 345779999999999999999999999
Q ss_pred cEEEEEcCCCcccccccC-----------------------------------ccceeccCCcccEEE--EcCCCCEEEE
Q 000054 2294 TVCTWQLEVGGRSNVRPM-----------------------------------ESCLCFSSHAMDVSY--ITSSGSVIAA 2336 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~-----------------------------------~s~~t~~gH~~~V~a--fSpdGslLAT 2336 (2548)
++++||+.+.+.+...+. ...+.+.||...|.+ .++++++|++
T Consensus 258 t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~S 337 (603)
T KOG0318|consen 258 TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYS 337 (603)
T ss_pred eEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEe
Confidence 999999987753322111 234456789998886 7899999999
Q ss_pred EeccCCCCeEEEEECCCCCCCc-ceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCc--cccCc----
Q 000054 2337 AGHSSNGINVVVWDTLAPPTSS-RASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRY--IATGK---- 2409 (2548)
Q Consensus 2337 gG~SS~DGtVrIWDl~t~~~k~-v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~--l~TGk---- 2409 (2548)
|. .||.|.-||...+ .. ...-++|...|.+++.+..+ .+++.|.|.++++.++.. .....
T Consensus 338 gs---yDG~I~~W~~~~g--~~~~~~g~~h~nqI~~~~~~~~~--------~~~t~g~Dd~l~~~~~~~~~~t~~~~~~l 404 (603)
T KOG0318|consen 338 GS---YDGHINSWDSGSG--TSDRLAGKGHTNQIKGMAASESG--------ELFTIGWDDTLRVISLKDNGYTKSEVVKL 404 (603)
T ss_pred ec---cCceEEEEecCCc--cccccccccccceEEEEeecCCC--------cEEEEecCCeEEEEecccCcccccceeec
Confidence 84 8999999999763 32 22236799999999977643 888999999999998631 00000
Q ss_pred -----eeee-----------------ecCC----CCCCCccccccccCCCCCC--ccCCCCCceEEEc----------cc
Q 000054 2410 -----TKKH-----------------KHSD----RGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI----------PK 2451 (2548)
Q Consensus 2410 -----~l~t-----------------l~~~----~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi----------~~ 2451 (2548)
.+.. +... ...-......++++|++.. +++.|++++++.+ ..
T Consensus 405 g~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~ 484 (603)
T KOG0318|consen 405 GSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLL 484 (603)
T ss_pred CCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeee
Confidence 0000 0000 0111233456788999888 8888999999874 24
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEE
Q 000054 2452 AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLS 2529 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaS 2529 (2548)
.|.++|++++++||+.|||+|...+.|.+||+.+++..... ..-|.. -|.+++|+|+. +||
T Consensus 485 ~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~-------------w~FHta----kI~~~aWsP~n~~vAT 547 (603)
T KOG0318|consen 485 EHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR-------------WAFHTA----KINCVAWSPNNKLVAT 547 (603)
T ss_pred cccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecce-------------eeeeee----eEEEEEeCCCceEEEe
Confidence 69999999999999999999999999999999988773211 122553 45677999999 899
Q ss_pred EECCCcEEEEECCCC
Q 000054 2530 CGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2530 GS~DGtIrIWDL~sg 2544 (2548)
||-|.+|.||+++..
T Consensus 548 GSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 548 GSLDTNVIIYSVKKP 562 (603)
T ss_pred ccccceEEEEEccCh
Confidence 999999999999764
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-22 Score=250.18 Aligned_cols=251 Identities=20% Similarity=0.299 Sum_probs=201.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++++|||.++|||+.||.|+|||...|-+..+|.. |+..|+.+.|+..|+.+++++-||+|+.||+.
T Consensus 353 i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte----------Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlk 422 (893)
T KOG0291|consen 353 ITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE----------HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLK 422 (893)
T ss_pred eeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEecc----------CCCceEEEEEEecCCEEEEeecCCeEEeeeec
Confidence 59999999999999999999999999999999999865 66999999999999999999999999999998
Q ss_pred CCcccccccCccceeccCCcc---cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAM---DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~---~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
....- +++..... ...+..|.|.++++|+ -+.-.|.+|++.+ ++.+..+.||.++|.+++|+|.
T Consensus 423 RYrNf--------RTft~P~p~QfscvavD~sGelV~AG~--~d~F~IfvWS~qT--GqllDiLsGHEgPVs~l~f~~~- 489 (893)
T KOG0291|consen 423 RYRNF--------RTFTSPEPIQFSCVAVDPSGELVCAGA--QDSFEIFVWSVQT--GQLLDILSGHEGPVSGLSFSPD- 489 (893)
T ss_pred cccee--------eeecCCCceeeeEEEEcCCCCEEEeec--cceEEEEEEEeec--CeeeehhcCCCCcceeeEEccc-
Confidence 66432 22332221 2234778899998886 2445799999987 7889999999999999999999
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEE
Q 000054 2379 LGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVT 2458 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vt 2458 (2548)
++.|++|+.|.+||+||+ ..+.....++ .+...|.
T Consensus 490 ------~~~LaS~SWDkTVRiW~i--f~s~~~vEtl-------------------------------------~i~sdvl 524 (893)
T KOG0291|consen 490 ------GSLLASGSWDKTVRIWDI--FSSSGTVETL-------------------------------------EIRSDVL 524 (893)
T ss_pred ------cCeEEeccccceEEEEEe--eccCceeeeE-------------------------------------eecccee
Confidence 789999999999999996 2332333332 3567899
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCcee-------ecEEEEEEcCCe--EEE
Q 000054 2459 RISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVR-------AGVTDIQVVSRG--FLS 2529 (2548)
Q Consensus 2459 sLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~-------a~VtsLafSPdG--LaS 2529 (2548)
.++|+|+|+-|+++.-||.|.+||...+..+.++.+.+.-.. -+...+.+. -..+.+++++|| |++
T Consensus 525 ~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~-----gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlA 599 (893)
T KOG0291|consen 525 AVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSG-----GRKETDRITAENSAKGKTFTTICYSADGKCILA 599 (893)
T ss_pred EEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccc-----cccccceeehhhcccCCceEEEEEcCCCCEEEe
Confidence 999999999999999999999999998888776643221100 011111111 237889999999 889
Q ss_pred EECCCcEEEEECCCCc
Q 000054 2530 CGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2530 GS~DGtIrIWDL~sg~ 2545 (2548)
||....|.+|+++++.
T Consensus 600 gG~sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 600 GGESNSICIYDVPEGV 615 (893)
T ss_pred cCCcccEEEEECchhh
Confidence 9999999999999874
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-22 Score=235.96 Aligned_cols=276 Identities=17% Similarity=0.298 Sum_probs=218.7
Q ss_pred CccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000054 2215 ATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2215 ~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
.++..|+ +.+++.||+.++++||+.|....||+..+|.....+. +|.+.|+++.|+.+|.+||||+.+
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~elt----------gHKDSVt~~~FshdgtlLATGdms 127 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELT----------GHKDSVTCCSFSHDGTLLATGDMS 127 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEec----------CCCCceEEEEEccCceEEEecCCC
Confidence 3455555 7899999999999999999999999999999666653 467999999999999999999999
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeE
Q 000054 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGAR 2370 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~Vt 2370 (2548)
|.|+||+..++..... +.....++. +|+|-+.+++.|. .||.+-+|.+.. ....+.+.||+.+++
T Consensus 128 G~v~v~~~stg~~~~~--------~~~e~~dieWl~WHp~a~illAG~---~DGsvWmw~ip~--~~~~kv~~Gh~~~ct 194 (399)
T KOG0296|consen 128 GKVLVFKVSTGGEQWK--------LDQEVEDIEWLKWHPRAHILLAGS---TDGSVWMWQIPS--QALCKVMSGHNSPCT 194 (399)
T ss_pred ccEEEEEcccCceEEE--------eecccCceEEEEecccccEEEeec---CCCcEEEEECCC--cceeeEecCCCCCcc
Confidence 9999999998853221 223344554 4889888888874 999999999965 467788999999999
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCC-----------------------------
Q 000054 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGS----------------------------- 2421 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s----------------------------- 2421 (2548)
+=.|.|+ |+.+++|..||+|++|| ++++..+..........
T Consensus 195 ~G~f~pd-------GKr~~tgy~dgti~~Wn---~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~s 264 (399)
T KOG0296|consen 195 CGEFIPD-------GKRILTGYDDGTIIVWN---PKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGS 264 (399)
T ss_pred cccccCC-------CceEEEEecCceEEEEe---cCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEcccc
Confidence 9999999 89999999999999999 66776665542110000
Q ss_pred ------------------Ccccccc---ccCCCCCC--ccCCCCCceEEEcc-------cCCCCCEEEEEEeCCCCEEEE
Q 000054 2422 ------------------SINTCAH---ADAQTGSG--SKPGDQNGMLWYIP-------KAHLGSVTRISTVPNTSLFLT 2471 (2548)
Q Consensus 2422 ------------------~~~~~~v---afSpdGk~--v~s~D~sv~Iwdi~-------~gH~~~VtsLafSPdG~~LaS 2471 (2548)
.....++ .++..=.+ .+..|+++.|||.. -.|+.+|+.+.|.+ ..+|++
T Consensus 265 gKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t 343 (399)
T KOG0296|consen 265 GKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLT 343 (399)
T ss_pred ceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchhee
Confidence 0000001 11111111 56678889999953 25899999999998 889999
Q ss_pred EeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECC
Q 000054 2472 GSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2472 GS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
++.||.|++||.++|+++.++ .||. ..|.+++++|++ ++|+|.|++.+||+++
T Consensus 344 ~c~~g~v~~wDaRtG~l~~~y--------------~GH~----~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 344 ACANGKVRQWDARTGQLKFTY--------------TGHQ----MGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eccCceEEeeeccccceEEEE--------------ecCc----hheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 999999999999999999988 7887 456788999999 8899999999999976
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-23 Score=255.47 Aligned_cols=238 Identities=15% Similarity=0.288 Sum_probs=210.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|.++.+||..++++++-.+|.|.|||.++...++.+.... -+|++..|-+..+.+++|+.|..|++|+.+
T Consensus 16 VKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~----------~PvRa~kfiaRknWiv~GsDD~~IrVfnyn 85 (794)
T KOG0276|consen 16 VKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSE----------VPVRAAKFIARKNWIVTGSDDMQIRVFNYN 85 (794)
T ss_pred eeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecc----------cchhhheeeeccceEEEecCCceEEEEecc
Confidence 7999999999999999999999999999999999886522 679999999999999999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
+++++. .|..|.+.|.+ .+|...+++++ |+|.+|++||... ...+.+++.||+..|.+++|+|.+
T Consensus 86 t~ekV~--------~FeAH~DyIR~iavHPt~P~vLts---SDDm~iKlW~we~-~wa~~qtfeGH~HyVMqv~fnPkD- 152 (794)
T KOG0276|consen 86 TGEKVK--------TFEAHSDYIRSIAVHPTLPYVLTS---SDDMTIKLWDWEN-EWACEQTFEGHEHYVMQVAFNPKD- 152 (794)
T ss_pred cceeeE--------EeeccccceeeeeecCCCCeEEec---CCccEEEEeeccC-ceeeeeEEcCcceEEEEEEecCCC-
Confidence 987543 48899998876 78999999998 4999999999985 377899999999999999999998
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR 2459 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts 2459 (2548)
.+.++|++-|++|++|.+ .+..+..++ ++|+..|+|
T Consensus 153 -----~ntFaS~sLDrTVKVWsl---gs~~~nfTl------------------------------------~gHekGVN~ 188 (794)
T KOG0276|consen 153 -----PNTFASASLDRTVKVWSL---GSPHPNFTL------------------------------------EGHEKGVNC 188 (794)
T ss_pred -----ccceeeeeccccEEEEEc---CCCCCceee------------------------------------eccccCcce
Confidence 889999999999999994 344444444 899999999
Q ss_pred EEEeCCC--CEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCc
Q 000054 2460 ISTVPNT--SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGS 2535 (2548)
Q Consensus 2460 LafSPdG--~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGt 2535 (2548)
+.+-+.| .+|+||++|.+|+|||.++.++++++ .||...|.. +.|+|.- ++|||.||+
T Consensus 189 Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL--------------eGHt~Nvs~----v~fhp~lpiiisgsEDGT 250 (794)
T KOG0276|consen 189 VDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL--------------EGHTNNVSF----VFFHPELPIIISGSEDGT 250 (794)
T ss_pred EEeccCCCcceEEecCCCceEEEeecchHHHHHHh--------------hcccccceE----EEecCCCcEEEEecCCcc
Confidence 9998855 79999999999999999999999876 788876644 4799988 889999999
Q ss_pred EEEEECCCC
Q 000054 2536 VKLIQLEDY 2544 (2548)
Q Consensus 2536 IrIWDL~sg 2544 (2548)
||||.-.+-
T Consensus 251 vriWhs~Ty 259 (794)
T KOG0276|consen 251 VRIWNSKTY 259 (794)
T ss_pred EEEecCcce
Confidence 999997654
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=259.30 Aligned_cols=243 Identities=21% Similarity=0.320 Sum_probs=200.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.++.|+|+|+++++++.|+.+++|+..+++. ..... ..+|...|++++|+|++.++++|+.|++|++||+.
T Consensus 162 v~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~-------l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~ 233 (456)
T KOG0266|consen 162 VTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRE-------LSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLK 233 (456)
T ss_pred eEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhcc-------ccccccceeeeEECCCCcEEEEecCCceEEEeecc
Confidence 68899999999999999999999999976663 11111 13467999999999999999999999999999994
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
... ...+++.+|...|.+ |+|+|+++++|+ .|++|+|||+++ ++++..+.+|.+.|++++|.++
T Consensus 234 ~~~-------~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs---~D~tvriWd~~~--~~~~~~l~~hs~~is~~~f~~d-- 299 (456)
T KOG0266|consen 234 DDG-------RNLKTLKGHSTYVTSVAFSPDGNLLVSGS---DDGTVRIWDVRT--GECVRKLKGHSDGISGLAFSPD-- 299 (456)
T ss_pred CCC-------eEEEEecCCCCceEEEEecCCCCEEEEec---CCCcEEEEeccC--CeEEEeeeccCCceEEEEECCC--
Confidence 332 134568899999975 999999999986 999999999987 7899999999999999999999
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCc--eeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCC--
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGK--TKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG-- 2455 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk--~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~-- 2455 (2548)
+.+|++++.||.|++|| ..++. +...+ .+++.
T Consensus 300 -----~~~l~s~s~d~~i~vwd---~~~~~~~~~~~~------------------------------------~~~~~~~ 335 (456)
T KOG0266|consen 300 -----GNLLVSASYDGTIRVWD---LETGSKLCLKLL------------------------------------SGAENSA 335 (456)
T ss_pred -----CCEEEEcCCCccEEEEE---CCCCceeeeecc------------------------------------cCCCCCC
Confidence 78999999999999999 44555 33333 33333
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECC
Q 000054 2456 SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGD 2533 (2548)
Q Consensus 2456 ~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~D 2533 (2548)
+++++.|+|++.++++++.|+++++||+..+..+..+ .+|...+ ..+.+...++.| +++|+.|
T Consensus 336 ~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~--------------~~~~~~~-~~~~~~~~~~~~~~i~sg~~d 400 (456)
T KOG0266|consen 336 PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY--------------TGHSNLV-RCIFSPTLSTGGKLIYSGSED 400 (456)
T ss_pred ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee--------------cccCCcc-eeEecccccCCCCeEEEEeCC
Confidence 5999999999999999999999999999999998877 4555433 233444556777 8899999
Q ss_pred CcEEEEECCCCc
Q 000054 2534 GSVKLIQLEDYQ 2545 (2548)
Q Consensus 2534 GtIrIWDL~sg~ 2545 (2548)
+.|++|++.++.
T Consensus 401 ~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 401 GSVYVWDSSSGG 412 (456)
T ss_pred ceEEEEeCCccc
Confidence 999999998753
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.4e-23 Score=240.91 Aligned_cols=246 Identities=19% Similarity=0.269 Sum_probs=208.2
Q ss_pred CccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCC-ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC
Q 000054 2215 ATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKD-KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL 2291 (2548)
Q Consensus 2215 ~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg-~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~ 2291 (2548)
+.+.||+ +..++|+..|+++++++.|-.+.+||.++. ++++.. .+|...|.++.|-|.|+++++++.
T Consensus 144 ~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~----------~gh~h~vS~V~f~P~gd~ilS~sr 213 (406)
T KOG0295|consen 144 RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSL----------IGHEHGVSSVFFLPLGDHILSCSR 213 (406)
T ss_pred hhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHh----------cCcccceeeEEEEecCCeeeeccc
Confidence 3455555 799999999999999999999999998863 333332 235588999999999999999999
Q ss_pred CCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe
Q 000054 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA 2369 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V 2369 (2548)
|.+|+.|++.+|-++ +++.+|...|.. .+.||.++|+++ .|.+|++|-+.+ .++...++.|+..|
T Consensus 214 D~tik~We~~tg~cv--------~t~~~h~ewvr~v~v~~DGti~As~s---~dqtl~vW~~~t--~~~k~~lR~hEh~v 280 (406)
T KOG0295|consen 214 DNTIKAWECDTGYCV--------KTFPGHSEWVRMVRVNQDGTIIASCS---NDQTLRVWVVAT--KQCKAELREHEHPV 280 (406)
T ss_pred ccceeEEecccceeE--------EeccCchHhEEEEEecCCeeEEEecC---CCceEEEEEecc--chhhhhhhccccce
Confidence 999999999998654 358899887764 677899999985 999999999986 67888899999999
Q ss_pred EEEEEccCCCC--------CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCC
Q 000054 2370 RSISVFDNDLG--------SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGD 2441 (2548)
Q Consensus 2370 tSLafsP~dlg--------~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D 2441 (2548)
-+++|.|..-. ....++++.+|+.|++|++|| +.+|+++.++
T Consensus 281 Eci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wd---v~tg~cL~tL--------------------------- 330 (406)
T KOG0295|consen 281 ECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWD---VSTGMCLFTL--------------------------- 330 (406)
T ss_pred EEEEecccccCcchhhccCCCCCccEEEeecccceEEEEe---ccCCeEEEEE---------------------------
Confidence 99999886311 111246999999999999999 7889999998
Q ss_pred CCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEE
Q 000054 2442 QNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQ 2521 (2548)
Q Consensus 2442 ~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLa 2521 (2548)
.+|..+|..++|+|.|+||+++.+|++++|||+++++++++++ .|.. .|++++
T Consensus 331 ---------~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~--------------ah~h----fvt~lD 383 (406)
T KOG0295|consen 331 ---------VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE--------------AHEH----FVTSLD 383 (406)
T ss_pred ---------ecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC--------------CCcc----eeEEEe
Confidence 8899999999999999999999999999999999999999883 3332 367889
Q ss_pred EcCCe--EEEEECCCcEEEEE
Q 000054 2522 VVSRG--FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2522 fSPdG--LaSGS~DGtIrIWD 2540 (2548)
|+.+. ++||+-|.++++|.
T Consensus 384 fh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 384 FHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred cCCCCceEEeccccceeeeee
Confidence 98888 88999999999996
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-24 Score=245.92 Aligned_cols=237 Identities=19% Similarity=0.313 Sum_probs=198.6
Q ss_pred CCccCCeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000054 2214 PATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2214 ~~tl~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
..+..++ .|+.+ |...+++|..|++|+|||..+-.+...+ .+|++.|.|+.|. .+.+++|+.|.
T Consensus 194 Se~skgV--YClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L----------~GHtGSVLCLqyd--~rviisGSSDs 257 (499)
T KOG0281|consen 194 SENSKGV--YCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKIL----------TGHTGSVLCLQYD--ERVIVSGSSDS 257 (499)
T ss_pred cccCCce--EEEEe--cchhhhcccccCceEEeccccHHHHHhh----------hcCCCcEEeeecc--ceEEEecCCCc
Confidence 3345554 78885 5677999999999999998887766654 3467999999996 56899999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCC-CcceeeeccCCCeEEE
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPT-SSRASITCHEGGARSI 2372 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~-k~v~sl~gHs~~VtSL 2372 (2548)
+|++||+++|+.++ ++-+|...|.-+.-+..+++++ |.|.++.+||+..+.. .+.+.+.||...|+.+
T Consensus 258 TvrvWDv~tge~l~--------tlihHceaVLhlrf~ng~mvtc---SkDrsiaVWdm~sps~it~rrVLvGHrAaVNvV 326 (499)
T KOG0281|consen 258 TVRVWDVNTGEPLN--------TLIHHCEAVLHLRFSNGYMVTC---SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 326 (499)
T ss_pred eEEEEeccCCchhh--------HHhhhcceeEEEEEeCCEEEEe---cCCceeEEEeccCchHHHHHHHHhhhhhheeee
Confidence 99999999997544 3678888887654456788887 4999999999987532 2457788999999999
Q ss_pred EEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccC
Q 000054 2373 SVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKA 2452 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~g 2452 (2548)
.|... ++++++.|.+|++|+ +.++++++++ .+
T Consensus 327 dfd~k---------yIVsASgDRTikvW~---~st~efvRtl------------------------------------~g 358 (499)
T KOG0281|consen 327 DFDDK---------YIVSASGDRTIKVWS---TSTCEFVRTL------------------------------------NG 358 (499)
T ss_pred ccccc---------eEEEecCCceEEEEe---ccceeeehhh------------------------------------hc
Confidence 98755 999999999999999 7788888887 78
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEEC
Q 000054 2453 HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGG 2532 (2548)
Q Consensus 2453 H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS~ 2532 (2548)
|...|-|+.+ .|+++++||.|.+|++||+..|.++..+ .||..-| .++.|....+++|+.
T Consensus 359 HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvL--------------eGHEeLv----RciRFd~krIVSGaY 418 (499)
T KOG0281|consen 359 HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL--------------EGHEELV----RCIRFDNKRIVSGAY 418 (499)
T ss_pred ccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHH--------------hchHHhh----hheeecCceeeeccc
Confidence 9999999988 7899999999999999999999998755 7888544 566998888999999
Q ss_pred CCcEEEEECCCCc
Q 000054 2533 DGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2533 DGtIrIWDL~sg~ 2545 (2548)
||+||+||+..+.
T Consensus 419 DGkikvWdl~aal 431 (499)
T KOG0281|consen 419 DGKIKVWDLQAAL 431 (499)
T ss_pred cceEEEEeccccc
Confidence 9999999998753
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-23 Score=262.20 Aligned_cols=200 Identities=25% Similarity=0.400 Sum_probs=180.4
Q ss_pred cCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCc
Q 000054 2217 VENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT 2294 (2548)
Q Consensus 2217 l~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGt 2294 (2548)
+-||. |...+|+|+.++|++++.|++||+|.+.+..++..|++ |..+|++++|+|.|-+||||+.|++
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~G----------H~~PVwdV~F~P~GyYFatas~D~t 516 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKG----------HLAPVWDVQFAPRGYYFATASHDQT 516 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecC----------CCcceeeEEecCCceEEEecCCCce
Confidence 44444 78999999999999999999999999999999888853 6699999999999999999999999
Q ss_pred EEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEE
Q 000054 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSI 2372 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSL 2372 (2548)
.++|...... +...+.+|-++|.| |+|+++++++|+ .|++|++||+.+ +..++.|.||.++|.++
T Consensus 517 ArLWs~d~~~--------PlRifaghlsDV~cv~FHPNs~Y~aTGS---sD~tVRlWDv~~--G~~VRiF~GH~~~V~al 583 (707)
T KOG0263|consen 517 ARLWSTDHNK--------PLRIFAGHLSDVDCVSFHPNSNYVATGS---SDRTVRLWDVST--GNSVRIFTGHKGPVTAL 583 (707)
T ss_pred eeeeecccCC--------chhhhcccccccceEEECCcccccccCC---CCceEEEEEcCC--CcEEEEecCCCCceEEE
Confidence 9999988643 23458899988865 999999999984 999999999987 78899999999999999
Q ss_pred EEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccC
Q 000054 2373 SVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKA 2452 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~g 2452 (2548)
+|+|. |.+|++|+.||.|++|| +.+|+.+..+ .+
T Consensus 584 ~~Sp~-------Gr~LaSg~ed~~I~iWD---l~~~~~v~~l------------------------------------~~ 617 (707)
T KOG0263|consen 584 AFSPC-------GRYLASGDEDGLIKIWD---LANGSLVKQL------------------------------------KG 617 (707)
T ss_pred EEcCC-------CceEeecccCCcEEEEE---cCCCcchhhh------------------------------------hc
Confidence 99998 89999999999999999 5667776665 78
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 000054 2453 HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2453 H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~T 2485 (2548)
|.+.|.++.|+.+|..||+||.|.+|++||+..
T Consensus 618 Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 618 HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 999999999999999999999999999999874
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-22 Score=226.22 Aligned_cols=282 Identities=17% Similarity=0.249 Sum_probs=215.9
Q ss_pred EEEEEEcCC-CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPL-RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPd-G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
+..++|||. |..||+++.|..||+|+...+....+...+. .+|...|++++|+|.|++|++|+.|.++.||.-
T Consensus 17 ~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld------~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k 90 (312)
T KOG0645|consen 17 VWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLD------DGHKRSVRSVAWSPHGRYLASASFDATVVIWKK 90 (312)
T ss_pred EEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEecc------ccchheeeeeeecCCCcEEEEeeccceEEEeec
Confidence 799999998 8999999999999999988644433332222 357899999999999999999999999999987
Q ss_pred CCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCC-CCCcceeeeccCCCeEEEEEccC
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAP-PTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~-~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
..+. ++...++.||.+.|-+ |+++|++||+++ .|+.|-||.+... ...+...++.|+..|..+.|+|.
T Consensus 91 ~~~e------fecv~~lEGHEnEVK~Vaws~sG~~LATCS---RDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 91 EDGE------FECVATLEGHENEVKCVAWSASGNYLATCS---RDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred CCCc------eeEEeeeeccccceeEEEEcCCCCEEEEee---CCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence 6543 3345668999998875 999999999995 9999999998732 24578899999999999999997
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc----cc
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI----PK 2451 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi----~~ 2451 (2548)
..+|++++.|.+|++|+-..-..-.+.+++. .+.. ..-.++|.+.|.. .++.|++++||.. ..
T Consensus 162 -------~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~---g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~ 230 (312)
T KOG0645|consen 162 -------EDLLFSCSYDNTIKVYRDEDDDDWECVQTLD---GHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSG 230 (312)
T ss_pred -------cceeEEeccCCeEEEEeecCCCCeeEEEEec---Cccc-eEEEEEecCCCceEEEecCCcceEeeeeccCcch
Confidence 5699999999999999842122334566652 1111 2345678888855 7788889999983 34
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EE
Q 000054 2452 AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FL 2528 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---La 2528 (2548)
.|...++.++|. ...++|++.|+.|+++.-..+-.-..++ ++...-..|+.. |.+++|.|.+ |+
T Consensus 231 ~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~-------l~~~~~~aHe~d----VNsV~w~p~~~~~L~ 297 (312)
T KOG0645|consen 231 MHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWN-------LLAKKEGAHEVD----VNSVQWNPKVSNRLA 297 (312)
T ss_pred hcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHH-------HHHhhhcccccc----cceEEEcCCCCCcee
Confidence 588899999997 6689999999999999866421111110 011112456654 4667999953 99
Q ss_pred EEECCCcEEEEECC
Q 000054 2529 SCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2529 SGS~DGtIrIWDL~ 2542 (2548)
+||+||.|++|.+.
T Consensus 298 s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 298 SGGDDGIVNFWELE 311 (312)
T ss_pred ecCCCceEEEEEec
Confidence 99999999999975
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-23 Score=242.67 Aligned_cols=249 Identities=16% Similarity=0.252 Sum_probs=203.7
Q ss_pred CCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC
Q 000054 2214 PATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL 2291 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~ 2291 (2548)
...+.||+ |.|+.| +.+.+++|+.|.+|+|||+++|+++.++- +|.+.|..+.|+ +.+++|++.
T Consensus 230 ~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tli----------hHceaVLhlrf~--ng~mvtcSk 295 (499)
T KOG0281|consen 230 LKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLI----------HHCEAVLHLRFS--NGYMVTCSK 295 (499)
T ss_pred HHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHh----------hhcceeEEEEEe--CCEEEEecC
Confidence 44555665 788886 45699999999999999999999988863 367999999997 678999999
Q ss_pred CCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
|.++.+||+.....+. ....+.||...|..+.-+.++|++++ .|++|++|++.+ ..+++++.+|..+|.|
T Consensus 296 DrsiaVWdm~sps~it-----~rrVLvGHrAaVNvVdfd~kyIVsAS---gDRTikvW~~st--~efvRtl~gHkRGIAC 365 (499)
T KOG0281|consen 296 DRSIAVWDMASPTDIT-----LRRVLVGHRAAVNVVDFDDKYIVSAS---GDRTIKVWSTST--CEFVRTLNGHKRGIAC 365 (499)
T ss_pred CceeEEEeccCchHHH-----HHHHHhhhhhheeeeccccceEEEec---CCceEEEEeccc--eeeehhhhccccccee
Confidence 9999999998664332 23457899999988777889999984 899999999987 7899999999999999
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK 2451 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~ 2451 (2548)
+.+. +.++++|+.|.+|++|| +..|.+++.+ +
T Consensus 366 lQYr---------~rlvVSGSSDntIRlwd---i~~G~cLRvL------------------------------------e 397 (499)
T KOG0281|consen 366 LQYR---------DRLVVSGSSDNTIRLWD---IECGACLRVL------------------------------------E 397 (499)
T ss_pred hhcc---------CeEEEecCCCceEEEEe---ccccHHHHHH------------------------------------h
Confidence 9975 45999999999999999 6788888887 8
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEE
Q 000054 2452 AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCG 2531 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS 2531 (2548)
||+.-|.++.| +.+.+++|+.||+|+|||+.++..-.... .++-..++..|++. |..+.|..-.+++++
T Consensus 398 GHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~-----~~~Cl~~lv~hsgR----VFrLQFD~fqIvsss 466 (499)
T KOG0281|consen 398 GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPA-----STLCLRTLVEHSGR----VFRLQFDEFQIISSS 466 (499)
T ss_pred chHHhhhheee--cCceeeeccccceEEEEecccccCCcccc-----cchHHHhhhhccce----eEEEeecceEEEecc
Confidence 99999999999 67899999999999999998764322110 01111123456554 467789887799999
Q ss_pred CCCcEEEEECCCCc
Q 000054 2532 GDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2532 ~DGtIrIWDL~sg~ 2545 (2548)
.|.+|-|||+.++.
T Consensus 467 HddtILiWdFl~~~ 480 (499)
T KOG0281|consen 467 HDDTILIWDFLNGP 480 (499)
T ss_pred CCCeEEEEEcCCCC
Confidence 99999999998764
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-22 Score=230.06 Aligned_cols=232 Identities=16% Similarity=0.259 Sum_probs=195.3
Q ss_pred CCeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCC--c-eeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCc
Q 000054 2218 ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKD--K-ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT 2294 (2548)
Q Consensus 2218 ~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg--~-~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGt 2294 (2548)
...-|...+|+|.|+++|.|+-|+...||++.+. + .+..-+. ..+|.+-+.++.|-+|+ .|+|++.|.+
T Consensus 96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~-------l~gHtgylScC~f~dD~-~ilT~SGD~T 167 (343)
T KOG0286|consen 96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRE-------LAGHTGYLSCCRFLDDN-HILTGSGDMT 167 (343)
T ss_pred CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeee-------ecCccceeEEEEEcCCC-ceEecCCCce
Confidence 3334789999999999999999999999999854 2 1222222 34567999999998855 5999999999
Q ss_pred EEEEEcCCCcccccccCccceeccCCcccEEE--EcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
..+||+++++.. +.+.+|..+|.+ ++| +++.+++|+ -|+..++||++. +.+++.|.+|+..|++
T Consensus 168 CalWDie~g~~~--------~~f~GH~gDV~slsl~p~~~ntFvSg~---cD~~aklWD~R~--~~c~qtF~ghesDINs 234 (343)
T KOG0286|consen 168 CALWDIETGQQT--------QVFHGHTGDVMSLSLSPSDGNTFVSGG---CDKSAKLWDVRS--GQCVQTFEGHESDINS 234 (343)
T ss_pred EEEEEcccceEE--------EEecCCcccEEEEecCCCCCCeEEecc---cccceeeeeccC--cceeEeecccccccce
Confidence 999999999744 348899999986 778 899999997 799999999997 6899999999999999
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI 2449 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi 2449 (2548)
|.|+|+ |.-+++|+.|++.|+||+| ..+.+..+. ..........++|+..|++ .+..|.++.+||.
T Consensus 235 v~ffP~-------G~afatGSDD~tcRlyDlR---aD~~~a~ys--~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt 302 (343)
T KOG0286|consen 235 VRFFPS-------GDAFATGSDDATCRLYDLR---ADQELAVYS--HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT 302 (343)
T ss_pred EEEccC-------CCeeeecCCCceeEEEeec---CCcEEeeec--cCcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence 999999 7899999999999999976 344555542 2233445677899999998 6788899999996
Q ss_pred c--------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000054 2450 P--------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWD 2482 (2548)
Q Consensus 2450 ~--------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWD 2482 (2548)
+ .||++.|+|+..+|||.-++|||.|.++|||.
T Consensus 303 lk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 303 LKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 4 58999999999999999999999999999994
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-22 Score=250.15 Aligned_cols=298 Identities=16% Similarity=0.248 Sum_probs=222.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCC---------C--------------------------C
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAAN---------V--------------------------P 2266 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs---------~--------------------------~ 2266 (2548)
+..++|+|.|..+++|+.||.|+|||+..+.+...+++++|-- . .
T Consensus 108 vi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~ 187 (775)
T KOG0319|consen 108 VITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHT 187 (775)
T ss_pred eEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHH
Confidence 6889999999999999999999999999999999888754321 0 1
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccccc--------------------------------------
Q 000054 2267 PPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNV-------------------------------------- 2308 (2548)
Q Consensus 2267 ~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i-------------------------------------- 2308 (2548)
...|...|++++|.+|+..+++++.|..+.+||+.+-+....
T Consensus 188 ~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~ 267 (775)
T KOG0319|consen 188 MILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDS 267 (775)
T ss_pred HHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEec
Confidence 134677888888888887777777777777777532110000
Q ss_pred ----------cc----C---------------------------------------------------------------
Q 000054 2309 ----------RP----M--------------------------------------------------------------- 2311 (2548)
Q Consensus 2309 ----------~p----~--------------------------------------------------------------- 2311 (2548)
.+ .
T Consensus 268 es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~ 347 (775)
T KOG0319|consen 268 ESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPE 347 (775)
T ss_pred ccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCc
Confidence 00 0
Q ss_pred --------ccceeccCCcccEEEEc--CCCCEEEEEeccCCCCeEEEEECCCCC--CCcceeeeccCCCeEEEEEccCCC
Q 000054 2312 --------ESCLCFSSHAMDVSYIT--SSGSVIAAAGHSSNGINVVVWDTLAPP--TSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2312 --------~s~~t~~gH~~~V~afS--pdGslLATgG~SS~DGtVrIWDl~t~~--~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
..-+.+.||...|.++. .+|.+|++|+ .|+++++|.++... ..++....+|+..|.+|+++...
T Consensus 348 lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~s---KD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~- 423 (775)
T KOG0319|consen 348 LRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGS---KDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLG- 423 (775)
T ss_pred eEEEecCCCceEEEeCchhheeeeeecccCcEEEEec---CCceEEEEEecCCcchhhhhhhhcccccccceeeecccC-
Confidence 00112345666666544 5677888885 99999999884321 23567778999999999996553
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeee--cCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc------
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHK--HSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI------ 2449 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl--~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi------ 2449 (2548)
..+++++|.|+++++|+++.-+.....-.+ ........-.+.+++++|+.++ .++.|.+.+||+.
T Consensus 424 -----asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~ 498 (775)
T KOG0319|consen 424 -----ASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLL 498 (775)
T ss_pred -----ccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEE
Confidence 679999999999999998641111111011 0011112234567899999998 6788899999984
Q ss_pred --ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-
Q 000054 2450 --PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG- 2526 (2548)
Q Consensus 2450 --~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG- 2526 (2548)
+.||...|++|.|+|..+.++|+|.|++|+||.+.++.++++| .||. +.|..+.|-.+|
T Consensus 499 ~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~--------------eGH~----~aVlra~F~~~~~ 560 (775)
T KOG0319|consen 499 GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTF--------------EGHT----SAVLRASFIRNGK 560 (775)
T ss_pred EEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeee--------------cCcc----ceeEeeeeeeCCc
Confidence 5799999999999999999999999999999999999999988 7887 455677898888
Q ss_pred -EEEEECCCcEEEEECCCCcc
Q 000054 2527 -FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2527 -LaSGS~DGtIrIWDL~sg~l 2546 (2548)
|+||++||-||+|++.++..
T Consensus 561 qliS~~adGliKlWnikt~eC 581 (775)
T KOG0319|consen 561 QLISAGADGLIKLWNIKTNEC 581 (775)
T ss_pred EEEeccCCCcEEEEeccchhh
Confidence 99999999999999998753
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.4e-22 Score=227.50 Aligned_cols=271 Identities=22% Similarity=0.325 Sum_probs=210.4
Q ss_pred CCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCC-ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe
Q 000054 2214 PATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKD-KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA 2290 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg-~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS 2290 (2548)
.-.+.+|. |.++.|+|+|.+||+|+.|..|.+|+.... +....+ .+|.++|..+.|.+|++.+++++
T Consensus 40 ~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l----------kgHsgAVM~l~~~~d~s~i~S~g 109 (338)
T KOG0265|consen 40 IMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL----------KGHSGAVMELHGMRDGSHILSCG 109 (338)
T ss_pred hhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeee----------ccccceeEeeeeccCCCEEEEec
Confidence 33444554 799999999999999999999999996532 222332 24679999999999999999999
Q ss_pred CCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCC--CCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCC
Q 000054 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSS--GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGG 2368 (2548)
Q Consensus 2291 ~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpd--GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~ 2368 (2548)
.|++|+.||+++|++.. .+.+|..-|..+.|. |..++..+ |+|+++++||++. ..+++++. ..-.
T Consensus 110 tDk~v~~wD~~tG~~~r--------k~k~h~~~vNs~~p~rrg~~lv~Sg--sdD~t~kl~D~R~--k~~~~t~~-~kyq 176 (338)
T KOG0265|consen 110 TDKTVRGWDAETGKRIR--------KHKGHTSFVNSLDPSRRGPQLVCSG--SDDGTLKLWDIRK--KEAIKTFE-NKYQ 176 (338)
T ss_pred CCceEEEEecccceeee--------hhccccceeeecCccccCCeEEEec--CCCceEEEEeecc--cchhhccc-ccee
Confidence 99999999999998653 277888877765553 44444444 6999999999996 55666663 3557
Q ss_pred eEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceE
Q 000054 2369 ARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGML 2446 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~I 2446 (2548)
++++.|... +..+.+|+-|+.|++||+|. .....++. + ....+..+..+++|.+ ..+.|.++++
T Consensus 177 ltAv~f~d~-------s~qv~sggIdn~ikvWd~r~---~d~~~~ls---G-h~DtIt~lsls~~gs~llsnsMd~tvrv 242 (338)
T KOG0265|consen 177 LTAVGFKDT-------SDQVISGGIDNDIKVWDLRK---NDGLYTLS---G-HADTITGLSLSRYGSFLLSNSMDNTVRV 242 (338)
T ss_pred EEEEEeccc-------ccceeeccccCceeeecccc---CcceEEee---c-ccCceeeEEeccCCCccccccccceEEE
Confidence 899999877 78999999999999999763 44444441 1 1223466788999888 5677889999
Q ss_pred EEcc------------cCCC----CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCC
Q 000054 2447 WYIP------------KAHL----GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFG 2510 (2548)
Q Consensus 2447 wdi~------------~gH~----~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~ 2510 (2548)
|++. .+|. .....++|+|+++.+..|+.|..+.+||..+...+..+ .||.
T Consensus 243 wd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lykl--------------pGh~ 308 (338)
T KOG0265|consen 243 WDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKL--------------PGHY 308 (338)
T ss_pred EEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEc--------------CCcc
Confidence 9953 2322 12356789999999999999999999999988888866 6887
Q ss_pred CceeecEEEEEEcCCe--EEEEECCCcEEEE
Q 000054 2511 GVVRAGVTDIQVVSRG--FLSCGGDGSVKLI 2539 (2548)
Q Consensus 2511 ~~V~a~VtsLafSPdG--LaSGS~DGtIrIW 2539 (2548)
+.| ..++|+|.. |.+|+.|.+|.+=
T Consensus 309 gsv----n~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 309 GSV----NEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred eeE----EEeeecCCCcEEEEeccCceeEee
Confidence 655 566999999 7899999999863
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-22 Score=223.29 Aligned_cols=237 Identities=22% Similarity=0.289 Sum_probs=202.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
++++.|+-+|+|.++++.|.+|++|+...|..+++|.+ |...|.+++.+.|+..|++|+.|+.|.+||++
T Consensus 20 V~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg----------hG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 20 VRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG----------HGHEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred eEEEEEccCCCEEEEcCCCceEEeecccccceeeeecC----------CCceeeeccccccccccccCCCCceEEEEEcc
Confidence 69999999999999999999999999999999999854 55789999999999999999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
+|+... .+.+|...|.+ |+.+...+++|+ .|..+++||.+....++++.+..-.++|.++.....
T Consensus 90 TGkv~R--------r~rgH~aqVNtV~fNeesSVv~Sgs---fD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h-- 156 (307)
T KOG0316|consen 90 TGKVDR--------RFRGHLAQVNTVRFNEESSVVASGS---FDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH-- 156 (307)
T ss_pred cCeeee--------ecccccceeeEEEecCcceEEEecc---ccceeEEEEcccCCCCccchhhhhcCceeEEEeccc--
Confidence 997543 38899999975 888888888885 899999999998888899999988999999998655
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR 2459 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts 2459 (2548)
.|++|+.||++|.||+|. |+... .-...+|++
T Consensus 157 -------eIvaGS~DGtvRtydiR~---G~l~s--------------------------------------Dy~g~pit~ 188 (307)
T KOG0316|consen 157 -------EIVAGSVDGTVRTYDIRK---GTLSS--------------------------------------DYFGHPITS 188 (307)
T ss_pred -------EEEeeccCCcEEEEEeec---ceeeh--------------------------------------hhcCCccee
Confidence 999999999999999773 32211 123458999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEE
Q 000054 2460 ISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVK 2537 (2548)
Q Consensus 2460 LafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIr 2537 (2548)
+.|+++++....++.|+++++-|-.+|++++.+ +||.+.-.- .++.+.... +++||.||.|.
T Consensus 189 vs~s~d~nc~La~~l~stlrLlDk~tGklL~sY--------------kGhkn~eyk--ldc~l~qsdthV~sgSEDG~Vy 252 (307)
T KOG0316|consen 189 VSFSKDGNCSLASSLDSTLRLLDKETGKLLKSY--------------KGHKNMEYK--LDCCLNQSDTHVFSGSEDGKVY 252 (307)
T ss_pred EEecCCCCEEEEeeccceeeecccchhHHHHHh--------------cccccceee--eeeeecccceeEEeccCCceEE
Confidence 999999999999999999999999999999877 566543311 233455444 88999999999
Q ss_pred EEECCCCc
Q 000054 2538 LIQLEDYQ 2545 (2548)
Q Consensus 2538 IWDL~sg~ 2545 (2548)
+||+.++.
T Consensus 253 ~wdLvd~~ 260 (307)
T KOG0316|consen 253 FWDLVDET 260 (307)
T ss_pred EEEeccce
Confidence 99998764
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.5e-21 Score=260.38 Aligned_cols=284 Identities=15% Similarity=0.157 Sum_probs=205.0
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWDl 2300 (2548)
|.+++|+|+|+++|+|+.|+.|+|||.............+ .....+...|.+++|++ ++.+|++++.||+|++||+
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~---~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~ 562 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYP---VVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDV 562 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccc---eEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEEC
Confidence 7999999999999999999999999976421000000000 00011236799999987 5789999999999999999
Q ss_pred CCCcccccccCccceeccCCcccEEE--EcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVSY--ITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
.+++.. ..+.+|...|.+ |+| ++.+|++|+ .|++|++||++. +..+..+..+ ..|.++.|++.
T Consensus 563 ~~~~~~--------~~~~~H~~~V~~l~~~p~~~~~L~Sgs---~Dg~v~iWd~~~--~~~~~~~~~~-~~v~~v~~~~~ 628 (793)
T PLN00181 563 ARSQLV--------TEMKEHEKRVWSIDYSSADPTLLASGS---DDGSVKLWSINQ--GVSIGTIKTK-ANICCVQFPSE 628 (793)
T ss_pred CCCeEE--------EEecCCCCCEEEEEEcCCCCCEEEEEc---CCCEEEEEECCC--CcEEEEEecC-CCeEEEEEeCC
Confidence 876532 236788888875 775 788999986 899999999976 5666677654 68999999776
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCc-eeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEcc----
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGK-TKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIP---- 2450 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk-~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~---- 2450 (2548)
+ +..+++|+.||.|++||++. ++ .+..+. .+. .....+.|. ++.. .++.|+.+++|++.
T Consensus 629 ~------g~~latgs~dg~I~iwD~~~---~~~~~~~~~---~h~-~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~ 694 (793)
T PLN00181 629 S------GRSLAFGSADHKVYYYDLRN---PKLPLCTMI---GHS-KTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSIS 694 (793)
T ss_pred C------CCEEEEEeCCCeEEEEECCC---CCccceEec---CCC-CCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCcc
Confidence 4 78999999999999999763 22 222221 111 123345555 3443 66788999999853
Q ss_pred ----------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEE
Q 000054 2451 ----------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDI 2520 (2548)
Q Consensus 2451 ----------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsL 2520 (2548)
.+|...+.+++|+|++.+|++|+.||.|++|+......+..+...+..... .-....|. ..|.++
T Consensus 695 ~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~-~~~~~~~~----~~V~~v 769 (793)
T PLN00181 695 GINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVS-GLEVDDAS----QFISSV 769 (793)
T ss_pred ccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccc-ccccCCCC----cEEEEE
Confidence 368889999999999999999999999999998877666544211111000 00012232 346788
Q ss_pred EEcCCe--EEEEECCCcEEEEEC
Q 000054 2521 QVVSRG--FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2521 afSPdG--LaSGS~DGtIrIWDL 2541 (2548)
+|+|++ +++|+.||+|+||++
T Consensus 770 ~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 770 CWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEcCCCCeEEEecCCCcEEEEec
Confidence 999999 899999999999996
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-21 Score=228.75 Aligned_cols=276 Identities=12% Similarity=0.187 Sum_probs=211.9
Q ss_pred ccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000054 2216 TVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
.+..|+ |.-+.|+++|+|||+++.|.+..+|++.....+..+..+. +|..+|.-+.|+||.+++++|+.|.
T Consensus 219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv-------gh~~~V~yi~wSPDdryLlaCg~~e 291 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLV-------GHSQPVSYIMWSPDDRYLLACGFDE 291 (519)
T ss_pred hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeee-------cccCceEEEEECCCCCeEEecCchH
Confidence 344454 7999999999999999999999999988655544444333 3569999999999999999999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCccc--EEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc-CCCeE
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMD--VSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH-EGGAR 2370 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~--V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH-s~~Vt 2370 (2548)
.+++||+.+|......+ .++... .++|.|||..+++|+ .|+.+..||+.. ......++- ...|.
T Consensus 292 ~~~lwDv~tgd~~~~y~-------~~~~~S~~sc~W~pDg~~~V~Gs---~dr~i~~wdlDg---n~~~~W~gvr~~~v~ 358 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYP-------SGLGFSVSSCAWCPDGFRFVTGS---PDRTIIMWDLDG---NILGNWEGVRDPKVH 358 (519)
T ss_pred heeeccCCcchhhhhcc-------cCcCCCcceeEEccCCceeEecC---CCCcEEEecCCc---chhhcccccccceeE
Confidence 99999999997543221 122333 345999999999985 899999999973 444444443 25699
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEE
Q 000054 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWY 2448 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwd 2448 (2548)
+++..++ |+.+++.+.|..|++++.. +....... ......+....+.||++ +...+..+.+||
T Consensus 359 dlait~D-------gk~vl~v~~d~~i~l~~~e---~~~dr~li-----se~~~its~~iS~d~k~~LvnL~~qei~LWD 423 (519)
T KOG0293|consen 359 DLAITYD-------GKYVLLVTVDKKIRLYNRE---ARVDRGLI-----SEEQPITSFSISKDGKLALVNLQDQEIHLWD 423 (519)
T ss_pred EEEEcCC-------CcEEEEEecccceeeechh---hhhhhccc-----cccCceeEEEEcCCCcEEEEEcccCeeEEee
Confidence 9999998 7889998999999999953 21111111 11223456678889998 778889999999
Q ss_pred c--------ccCCCCC--EEEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecE
Q 000054 2449 I--------PKAHLGS--VTRISTVP-NTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGV 2517 (2548)
Q Consensus 2449 i--------~~gH~~~--VtsLafSP-dG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~V 2517 (2548)
+ +.||... |..-+|.- +..++++||+|+.|+||+..+|+++.++ .||... |
T Consensus 424 l~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~L--------------sGHs~~----v 485 (519)
T KOG0293|consen 424 LEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVL--------------SGHSKT----V 485 (519)
T ss_pred cchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEee--------------cCCcce----e
Confidence 6 3467654 33334543 4589999999999999999999999877 688754 4
Q ss_pred EEEEEcCCe---EEEEECCCcEEEEECCCC
Q 000054 2518 TDIQVVSRG---FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2518 tsLafSPdG---LaSGS~DGtIrIWDL~sg 2544 (2548)
.+++|+|.. +||+|+||+||||.....
T Consensus 486 NcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 486 NCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred eEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 677999988 999999999999998765
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=239.90 Aligned_cols=238 Identities=18% Similarity=0.283 Sum_probs=201.0
Q ss_pred cCCeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 000054 2217 VENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVC 2296 (2548)
Q Consensus 2217 l~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVr 2296 (2548)
+..+.+++..|-+..+++++|+.|..||||+.++++.++.|.. |.+-|++++.+|...+++|++.|-+|+
T Consensus 53 V~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeA----------H~DyIR~iavHPt~P~vLtsSDDm~iK 122 (794)
T KOG0276|consen 53 VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEA----------HSDYIRSIAVHPTLPYVLTSSDDMTIK 122 (794)
T ss_pred ecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeec----------cccceeeeeecCCCCeEEecCCccEEE
Confidence 3444567777778889999999999999999999999999864 559999999999999999999999999
Q ss_pred EEEcCCCcccccccCccceeccCCcccEEE--EcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000054 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
+||++.+- ...+++.||...|.. |+| |.+.+|+++ -|++|++|.+.. ..+..++.+|..+|+||.
T Consensus 123 lW~we~~w-------a~~qtfeGH~HyVMqv~fnPkD~ntFaS~s---LDrTVKVWslgs--~~~nfTl~gHekGVN~Vd 190 (794)
T KOG0276|consen 123 LWDWENEW-------ACEQTFEGHEHYVMQVAFNPKDPNTFASAS---LDRTVKVWSLGS--PHPNFTLEGHEKGVNCVD 190 (794)
T ss_pred EeeccCce-------eeeeEEcCcceEEEEEEecCCCccceeeee---ccccEEEEEcCC--CCCceeeeccccCcceEE
Confidence 99998542 345679999998874 776 567999985 999999999976 567889999999999999
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCC
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAH 2453 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH 2453 (2548)
|-+.+ ..++|+||+.|.+|+||| .++..|++++ .||
T Consensus 191 yy~~g-----dkpylIsgaDD~tiKvWD---yQtk~CV~TL------------------------------------eGH 226 (794)
T KOG0276|consen 191 YYTGG-----DKPYLISGADDLTIKVWD---YQTKSCVQTL------------------------------------EGH 226 (794)
T ss_pred eccCC-----CcceEEecCCCceEEEee---cchHHHHHHh------------------------------------hcc
Confidence 98763 367999999999999999 7888998887 899
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEE
Q 000054 2454 LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCG 2531 (2548)
Q Consensus 2454 ~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS 2531 (2548)
...|..+.|+|.-.+++|||+||++|||+..|-++..++. -| . ..|++|+-.+.+ ++.|.
T Consensus 227 t~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn-------------~g-l----eRvW~I~~~k~~~~i~vG~ 288 (794)
T KOG0276|consen 227 TNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN-------------YG-L----ERVWCIAAHKGDGKIAVGF 288 (794)
T ss_pred cccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh-------------cC-C----ceEEEEeecCCCCeEEEec
Confidence 9999999999999999999999999999999888777662 11 1 235667776665 66777
Q ss_pred CCCcEEE
Q 000054 2532 GDGSVKL 2538 (2548)
Q Consensus 2532 ~DGtIrI 2538 (2548)
+.|.|.+
T Consensus 289 Deg~i~v 295 (794)
T KOG0276|consen 289 DEGSVTV 295 (794)
T ss_pred cCCcEEE
Confidence 6666643
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.1e-21 Score=226.50 Aligned_cols=260 Identities=20% Similarity=0.311 Sum_probs=206.6
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC---CCEEEEEeCCCcEEEEEcCCCcccc
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY---GHRFASAALDGTVCTWQLEVGGRSN 2307 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd---G~~LaSGS~DGtVrVWDl~tgk~i~ 2307 (2548)
++++++|+.||.+++||. .|+...++. +|.++|.+++|.-. ...|++++.|.++++|.++.+...
T Consensus 115 ~~~IltgsYDg~~riWd~-~Gk~~~~~~----------Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~- 182 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDL-KGKSIKTIV----------GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK- 182 (423)
T ss_pred CceEEEeecCCeeEEEec-CCceEEEEe----------cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh-
Confidence 689999999999999995 456666653 36699999998543 346999999999999999877532
Q ss_pred cccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCC-----------------------CCCCcceee
Q 000054 2308 VRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLA-----------------------PPTSSRASI 2362 (2548)
Q Consensus 2308 i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t-----------------------~~~k~v~sl 2362 (2548)
....+...||...|-+ ..++|..+++| |.|.+|+||+..+ ....++..+
T Consensus 183 ---~~~~~~~~GHk~~V~sVsv~~sgtr~~Sg---S~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl 256 (423)
T KOG0313|consen 183 ---VKALKVCRGHKRSVDSVSVDSSGTRFCSG---SWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL 256 (423)
T ss_pred ---hhHHhHhcccccceeEEEecCCCCeEEee---cccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe
Confidence 1233445699998876 56889999998 4999999999221 012356678
Q ss_pred eccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCC
Q 000054 2363 TCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPG 2440 (2548)
Q Consensus 2363 ~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~ 2440 (2548)
.||.+.|.+|.|.+.. .+.+++.|.+|+.|| +.++.++..+. ......++..++..++ .++.
T Consensus 257 ~GHt~~Vs~V~w~d~~--------v~yS~SwDHTIk~WD---letg~~~~~~~-----~~ksl~~i~~~~~~~Ll~~gss 320 (423)
T KOG0313|consen 257 EGHTEPVSSVVWSDAT--------VIYSVSWDHTIKVWD---LETGGLKSTLT-----TNKSLNCISYSPLSKLLASGSS 320 (423)
T ss_pred cccccceeeEEEcCCC--------ceEeecccceEEEEE---eecccceeeee-----cCcceeEeecccccceeeecCC
Confidence 8999999999999864 899999999999999 67787776652 2233456677777666 6677
Q ss_pred CCCceEEE-----------cccCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCc-EEEEecccccccccccCccc
Q 000054 2441 DQNGMLWY-----------IPKAHLGSVTRISTVPN-TSLFLTGSKDGDVKLWDAKAAQ-LVYHWSKLHERHTFLQPSSR 2507 (2548)
Q Consensus 2441 D~sv~Iwd-----------i~~gH~~~VtsLafSPd-G~~LaSGS~DGtIrIWDl~Tge-ll~tL~~~Hs~hsfl~~tl~ 2507 (2548)
+..+++|| .+.+|.+.|.++.|+|. ...|++|+.|+++++||+++.+ +++.+ .
T Consensus 321 dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI--------------~ 386 (423)
T KOG0313|consen 321 DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI--------------A 386 (423)
T ss_pred CCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee--------------c
Confidence 88899998 35689999999999995 5678999999999999999876 88877 6
Q ss_pred CCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECC
Q 000054 2508 GFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2508 GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~ 2542 (2548)
+|.+.| .++.|...+ |+|||.|.+|+|+.-.
T Consensus 387 ~h~DKv----l~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 387 GHNDKV----LSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred cCCceE----EEEeccCCceEEeccCcceEEEeccc
Confidence 787655 556999886 9999999999998754
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-22 Score=228.98 Aligned_cols=276 Identities=14% Similarity=0.123 Sum_probs=221.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+-|..|+|||+||++|+.||-|.+||+.+|+..+.++-.... ....+.++|.|+.|+.|...+++|+.||.|++|.++
T Consensus 216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd--~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~ 293 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD--NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIE 293 (508)
T ss_pred hhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhc--ceeecccceEEEeecccHHHhhccCcCCcEEEEEEe
Confidence 678899999999999999999999999999876654321111 344567899999999999999999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
+|.++... -..|...|++ |+.|+..+.+++ .|.+++|.-+.. ++++..++||++.|+...|.++
T Consensus 294 tG~ClRrF-------drAHtkGvt~l~FSrD~SqiLS~s---fD~tvRiHGlKS--GK~LKEfrGHsSyvn~a~ft~d-- 359 (508)
T KOG0275|consen 294 TGQCLRRF-------DRAHTKGVTCLSFSRDNSQILSAS---FDQTVRIHGLKS--GKCLKEFRGHSSYVNEATFTDD-- 359 (508)
T ss_pred cchHHHHh-------hhhhccCeeEEEEccCcchhhccc---ccceEEEecccc--chhHHHhcCccccccceEEcCC--
Confidence 99876431 3478888886 889999999985 899999999987 8999999999999999999998
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccccc--CCCCCCccCCCCCceEEEcc-------
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHAD--AQTGSGSKPGDQNGMLWYIP------- 2450 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vaf--SpdGk~v~s~D~sv~Iwdi~------- 2450 (2548)
|..+++++.||+|++|+ .++.+|+.+++..+ ........+.+ +|....++...++++|.++.
T Consensus 360 -----G~~iisaSsDgtvkvW~---~KtteC~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsf 430 (508)
T KOG0275|consen 360 -----GHHIISASSDGTVKVWH---GKTTECLSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSF 430 (508)
T ss_pred -----CCeEEEecCCccEEEec---CcchhhhhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeee
Confidence 88999999999999999 77889998874333 23233333333 33333377777777777642
Q ss_pred ---cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-
Q 000054 2451 ---KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG- 2526 (2548)
Q Consensus 2451 ---~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG- 2526 (2548)
+...+...+.+.+|.|.++++.++|+.++.|.+.+|++..+++ . |... |..++-+|..
T Consensus 431 sSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~-V-------------hEkd----vIGl~HHPHqN 492 (508)
T KOG0275|consen 431 SSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLP-V-------------HEKD----VIGLTHHPHQN 492 (508)
T ss_pred ccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeee-c-------------cccc----ccccccCcccc
Confidence 1234566778899999999999999999999999999988873 2 3221 2355778877
Q ss_pred -EEEEECCCcEEEEE
Q 000054 2527 -FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2527 -LaSGS~DGtIrIWD 2540 (2548)
+++-+.||.+++|.
T Consensus 493 llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 493 LLASYSEDGLLKLWK 507 (508)
T ss_pred hhhhhcccchhhhcC
Confidence 88999999999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.9e-21 Score=245.82 Aligned_cols=240 Identities=20% Similarity=0.378 Sum_probs=196.5
Q ss_pred cCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEc-CCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000054 2217 VENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEF-GKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2217 l~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl-~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
+.+|. |..++|+|++.++++|+.|++|+|||+ ..+..+.++++ |...|++++|+|+|+++++|+.|+
T Consensus 199 l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~g----------H~~~v~~~~f~p~g~~i~Sgs~D~ 268 (456)
T KOG0266|consen 199 LSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKG----------HSTYVTSVAFSPDGNLLVSGSDDG 268 (456)
T ss_pred ccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecC----------CCCceEEEEecCCCCEEEEecCCC
Confidence 34444 799999999999999999999999999 55677777643 669999999999999999999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCC--cceeeeccCCC-
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTS--SRASITCHEGG- 2368 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k--~v~sl~gHs~~- 2368 (2548)
+|++||++++++. ..+.+|...|. +|+++++++++++ .|+.|++||+.+ +. +...+.++...
T Consensus 269 tvriWd~~~~~~~--------~~l~~hs~~is~~~f~~d~~~l~s~s---~d~~i~vwd~~~--~~~~~~~~~~~~~~~~ 335 (456)
T KOG0266|consen 269 TVRIWDVRTGECV--------RKLKGHSDGISGLAFSPDGNLLVSAS---YDGTIRVWDLET--GSKLCLKLLSGAENSA 335 (456)
T ss_pred cEEEEeccCCeEE--------EeeeccCCceEEEEECCCCCEEEEcC---CCccEEEEECCC--CceeeeecccCCCCCC
Confidence 9999999987643 34788998887 4999999999985 899999999987 44 45667776655
Q ss_pred -eEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEE
Q 000054 2369 -ARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLW 2447 (2548)
Q Consensus 2369 -VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iw 2447 (2548)
++++.|+|+ +.++++++.|+.+++||+ ..+.+....
T Consensus 336 ~~~~~~fsp~-------~~~ll~~~~d~~~~~w~l---~~~~~~~~~--------------------------------- 372 (456)
T KOG0266|consen 336 PVTSVQFSPN-------GKYLLSASLDRTLKLWDL---RSGKSVGTY--------------------------------- 372 (456)
T ss_pred ceeEEEECCC-------CcEEEEecCCCeEEEEEc---cCCcceeee---------------------------------
Confidence 999999999 889999999999999994 456665554
Q ss_pred EcccCCCC---CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcC
Q 000054 2448 YIPKAHLG---SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVS 2524 (2548)
Q Consensus 2448 di~~gH~~---~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSP 2524 (2548)
.+|.. .+.+...++.+.++++|+.|+.|++||..++..+..+ .+|. ...+..++++|
T Consensus 373 ---~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l--------------~~h~---~~~~~~~~~~~ 432 (456)
T KOG0266|consen 373 ---TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRL--------------EGHS---KAAVSDLSSHP 432 (456)
T ss_pred ---cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhh--------------cCCC---CCceeccccCC
Confidence 34444 3344455789999999999999999999998877655 6673 24456778999
Q ss_pred Ce--EEEEE--CCCcEEEEECC
Q 000054 2525 RG--FLSCG--GDGSVKLIQLE 2542 (2548)
Q Consensus 2525 dG--LaSGS--~DGtIrIWDL~ 2542 (2548)
.. +++++ .|+.+++|..+
T Consensus 433 ~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 433 TENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CcCeeeecCcCCCceEEEecCC
Confidence 88 66766 79999999865
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5e-21 Score=249.75 Aligned_cols=292 Identities=16% Similarity=0.210 Sum_probs=219.3
Q ss_pred EEEEEEcCCCCEEEEEE--CCCeEEEEEcCCCc-eeEEEec-cCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 000054 2222 TRAFSSHPLRPFFLVGS--SNTHIYLWEFGKDK-ATATYGV-LPAANVPPPYALASISALQFDHYGHRFASAALDGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS--~DGsVrLWDl~tg~-~l~t~~~-l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrV 2297 (2548)
+..++.||+|..++||+ .||.++||+.+.-- ....... ++.+-.....|.+.|+|++|+|||.+||+|+.|+.|.+
T Consensus 16 IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~i 95 (942)
T KOG0973|consen 16 IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMI 95 (942)
T ss_pred EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEE
Confidence 78999999999999999 99999999975311 0000000 22222234457899999999999999999999999999
Q ss_pred EEcCC----------CcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc
Q 000054 2298 WQLEV----------GGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH 2365 (2548)
Q Consensus 2298 WDl~t----------gk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH 2365 (2548)
|+... |.............+.+|..+|. +|+|++.++++++ .|++|.||+.++ .+.+..+.+|
T Consensus 96 W~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s---~DnsViiwn~~t--F~~~~vl~~H 170 (942)
T KOG0973|consen 96 WERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVS---LDNSVIIWNAKT--FELLKVLRGH 170 (942)
T ss_pred eeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEec---ccceEEEEcccc--ceeeeeeecc
Confidence 99873 11111222234456889999997 4999999999996 899999999987 6889999999
Q ss_pred CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCC--CCCCCccccccccCCCCCCccCC---
Q 000054 2366 EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSD--RGGSSINTCAHADAQTGSGSKPG--- 2440 (2548)
Q Consensus 2366 s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~--~~~s~~~~~~vafSpdGk~v~s~--- 2440 (2548)
.+.|..+.|.|- |++++|-+.|++|++|++. +-...+.+..+ ..........+.|+|||.+++..
T Consensus 171 ~s~VKGvs~DP~-------Gky~ASqsdDrtikvwrt~---dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 171 QSLVKGVSWDPI-------GKYFASQSDDRTLKVWRTS---DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred cccccceEECCc-------cCeeeeecCCceEEEEEcc---cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence 999999999999 8999999999999999942 22233332111 12223445567899999983322
Q ss_pred ---CCCceEEE--------cccCCCCCEEEEEEeCC-----CC------------EEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2441 ---DQNGMLWY--------IPKAHLGSVTRISTVPN-----TS------------LFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2441 ---D~sv~Iwd--------i~~gH~~~VtsLafSPd-----G~------------~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
...+.|.+ .+-||.+++.+++|+|. .. .+|+||.|++|.||.....+++...
T Consensus 241 n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi 320 (942)
T KOG0973|consen 241 NGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI 320 (942)
T ss_pred cCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh
Confidence 22334432 24589999999999992 11 7899999999999999888887655
Q ss_pred cccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2493 SKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2493 ~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
. . +.+ ..|.+++|+||| |+.||.||+|.+..++.+.
T Consensus 321 ~------~-----lf~------~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 321 H------N-----LFN------KSIVDMSWSPDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred h------h-----hhc------CceeeeeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence 1 1 122 347899999999 8999999999999997653
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.4e-20 Score=223.45 Aligned_cols=283 Identities=17% Similarity=0.258 Sum_probs=203.0
Q ss_pred CeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeE--EEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC----
Q 000054 2219 NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATA--TYGVLPAANVPPPYALASISALQFDHYGHRFASAALD---- 2292 (2548)
Q Consensus 2219 gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~--t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D---- 2292 (2548)
.+.+....|+|.|.|+|+|...|+|||||....+.+. ++..+ .++|.+++|+.++++++..+..
T Consensus 59 ~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~----------aG~I~Di~Wd~ds~RI~avGEGrerf 128 (603)
T KOG0318|consen 59 AHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVL----------AGPIKDISWDFDSKRIAAVGEGRERF 128 (603)
T ss_pred cceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeec----------ccccccceeCCCCcEEEEEecCccce
Confidence 4457888899999999999999999999987643322 23222 2778888888888877766543
Q ss_pred CcEEEEEcCCC------c--c---ccc---cc-------------------CccceeccCCcccEEE--EcCCCCEEEEE
Q 000054 2293 GTVCTWQLEVG------G--R---SNV---RP-------------------MESCLCFSSHAMDVSY--ITSSGSVIAAA 2337 (2548)
Q Consensus 2293 GtVrVWDl~tg------k--~---i~i---~p-------------------~~s~~t~~gH~~~V~a--fSpdGslLATg 2337 (2548)
|.+.+||-.+. . . ..+ +| +.-..++..|..-|.+ ++|||++++++
T Consensus 129 g~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~ 208 (603)
T KOG0318|consen 129 GHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATA 208 (603)
T ss_pred eEEEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEe
Confidence 35666665321 0 0 001 11 1112234556666665 89999999999
Q ss_pred eccCCCCeEEEEECCCCCCCcceeee---ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeee
Q 000054 2338 GHSSNGINVVVWDTLAPPTSSRASIT---CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHK 2414 (2548)
Q Consensus 2338 G~SS~DGtVrIWDl~t~~~k~v~sl~---gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl 2414 (2548)
| .||+|.+||=.+ ++.+..+. +|.+.|.+++|+|+ ++.++|++.|.+++||| ..+.++++++
T Consensus 209 g---sDgki~iyDGkt--ge~vg~l~~~~aHkGsIfalsWsPD-------s~~~~T~SaDkt~KIWd---Vs~~slv~t~ 273 (603)
T KOG0318|consen 209 G---SDGKIYIYDGKT--GEKVGELEDSDAHKGSIFALSWSPD-------STQFLTVSADKTIKIWD---VSTNSLVSTW 273 (603)
T ss_pred c---CCccEEEEcCCC--ccEEEEecCCCCccccEEEEEECCC-------CceEEEecCCceEEEEE---eeccceEEEe
Confidence 8 899999999876 66677776 89999999999999 78999999999999999 6677888777
Q ss_pred cCCCCCCCccccccccCCCCCCccCCCCCceEE--------EcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 000054 2415 HSDRGGSSINTCAHADAQTGSGSKPGDQNGMLW--------YIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAA 2486 (2548)
Q Consensus 2415 ~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iw--------di~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tg 2486 (2548)
.....-. ...-.+.|..+.-...+.++.+..+ ++..||...|++++.+|++++|++|+.||.|.-||..+|
T Consensus 274 ~~~~~v~-dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g 352 (603)
T KOG0318|consen 274 PMGSTVE-DQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSG 352 (603)
T ss_pred ecCCchh-ceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCc
Confidence 3222100 0111122332222234444444444 356899999999999999999999999999999999988
Q ss_pred cEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2487 QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2487 ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
..-... -++|.+.| .+++-+..+ ++|+|.|.++|+-++..+
T Consensus 353 ~~~~~~-------------g~~h~nqI----~~~~~~~~~~~~t~g~Dd~l~~~~~~~~ 394 (603)
T KOG0318|consen 353 TSDRLA-------------GKGHTNQI----KGMAASESGELFTIGWDDTLRVISLKDN 394 (603)
T ss_pred cccccc-------------cccccceE----EEEeecCCCcEEEEecCCeEEEEecccC
Confidence 764322 25677544 566788766 999999999999988543
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-20 Score=226.29 Aligned_cols=277 Identities=18% Similarity=0.249 Sum_probs=220.0
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCC----CCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 000054 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPP----YALASISALQFDHYGHRFASAALDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~----~H~~~VtsVaFSPdG~~LaSGS~DGtVr 2296 (2548)
|.+.+|+|... .+++|+.|-..++|++............-.|.++.. .....|++++|+.+|..||+|+.||.++
T Consensus 181 V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~r 260 (524)
T KOG0273|consen 181 VFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEAR 260 (524)
T ss_pred eEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEE
Confidence 78899999877 899999999999999874111100000001111111 1236799999999999999999999999
Q ss_pred EEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000054 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
+|+..... ..++..|..+|.+ |+..|.+|+++| .|+++.+||..+ +...+.+.-|+.+...|.|
T Consensus 261 iw~~~G~l---------~~tl~~HkgPI~slKWnk~G~yilS~~---vD~ttilwd~~~--g~~~q~f~~~s~~~lDVdW 326 (524)
T KOG0273|consen 261 IWNKDGNL---------ISTLGQHKGPIFSLKWNKKGTYILSGG---VDGTTILWDAHT--GTVKQQFEFHSAPALDVDW 326 (524)
T ss_pred EEecCchh---------hhhhhccCCceEEEEEcCCCCEEEecc---CCccEEEEeccC--ceEEEeeeeccCCccceEE
Confidence 99987542 1247789999986 888999999997 999999999976 6677888889988888998
Q ss_pred ccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc---
Q 000054 2375 FDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI--- 2449 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi--- 2449 (2548)
-.++ .+++++.||.|+++-+ ...+++.++.. .......+-|.|.|.+ .++.|++++||..
T Consensus 327 ~~~~--------~F~ts~td~~i~V~kv---~~~~P~~t~~G----H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~ 391 (524)
T KOG0273|consen 327 QSND--------EFATSSTDGCIHVCKV---GEDRPVKTFIG----HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS 391 (524)
T ss_pred ecCc--------eEeecCCCceEEEEEe---cCCCcceeeec----ccCceEEEEECCCCceEEEecCCCeeEeeecCCC
Confidence 7765 8999999999999994 44455555521 2223456789999998 7788999999984
Q ss_pred -----ccCCCCCEEEEEEeCCC---------CEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceee
Q 000054 2450 -----PKAHLGSVTRISTVPNT---------SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRA 2515 (2548)
Q Consensus 2450 -----~~gH~~~VtsLafSPdG---------~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a 2515 (2548)
+.+|...|+.+.|+|+| ..+++++.|++|++||+..+.++++| ..|. .
T Consensus 392 ~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f--------------~kH~----~ 453 (524)
T KOG0273|consen 392 NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTL--------------MKHQ----E 453 (524)
T ss_pred cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEee--------------ccCC----C
Confidence 45799999999999965 57999999999999999999999887 4565 4
Q ss_pred cEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2516 GVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2516 ~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.|++++|+|+| +|+|+.||.|.+|+.+.+.
T Consensus 454 pVysvafS~~g~ylAsGs~dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 454 PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK 485 (524)
T ss_pred ceEEEEecCCCcEEEecCCCCeeEeccccchh
Confidence 56788999999 9999999999999998764
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=210.95 Aligned_cols=214 Identities=18% Similarity=0.256 Sum_probs=175.1
Q ss_pred CCCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe
Q 000054 2213 PPATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA 2290 (2548)
Q Consensus 2213 p~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS 2290 (2548)
|..++++|+ |.++.|+-+|+++.||+.||+++|||++...+.+.|+ |..+|+++..+|+...|++|.
T Consensus 75 Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-----------~~spVn~vvlhpnQteLis~d 143 (311)
T KOG0315|consen 75 PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-----------HNSPVNTVVLHPNQTELISGD 143 (311)
T ss_pred ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-----------CCCCcceEEecCCcceEEeec
Confidence 456777775 8999999999999999999999999998855544442 458999999999999999999
Q ss_pred CCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCC----CCcceeeec
Q 000054 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPP----TSSRASITC 2364 (2548)
Q Consensus 2291 ~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~----~k~v~sl~g 2364 (2548)
.+|.|++||+....+.... .+.-...|. .+.|||+.++.+. +.|+.++|++.... ..++..++.
T Consensus 144 qsg~irvWDl~~~~c~~~l-------iPe~~~~i~sl~v~~dgsml~a~n---nkG~cyvW~l~~~~~~s~l~P~~k~~a 213 (311)
T KOG0315|consen 144 QSGNIRVWDLGENSCTHEL-------IPEDDTSIQSLTVMPDGSMLAAAN---NKGNCYVWRLLNHQTASELEPVHKFQA 213 (311)
T ss_pred CCCcEEEEEccCCcccccc-------CCCCCcceeeEEEcCCCcEEEEec---CCccEEEEEccCCCccccceEhhheec
Confidence 9999999999876543211 122223343 3789999999985 88999999986422 346788999
Q ss_pred cCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCc
Q 000054 2365 HEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNG 2444 (2548)
Q Consensus 2365 Hs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv 2444 (2548)
|++.+..+.++|+ +++|+++|.|.+++||+.... -+.-..
T Consensus 214 h~~~il~C~lSPd-------~k~lat~ssdktv~iwn~~~~--~kle~~------------------------------- 253 (311)
T KOG0315|consen 214 HNGHILRCLLSPD-------VKYLATCSSDKTVKIWNTDDF--FKLELV------------------------------- 253 (311)
T ss_pred ccceEEEEEECCC-------CcEEEeecCCceEEEEecCCc--eeeEEE-------------------------------
Confidence 9999999999999 799999999999999995421 011122
Q ss_pred eEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2445 MLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2445 ~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
.++|..+++..+|+.+|+||+||+.|+.+++||++.++.+..+
T Consensus 254 -----l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 254 -----LTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY 296 (311)
T ss_pred -----eecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec
Confidence 2789999999999999999999999999999999999998877
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-19 Score=198.30 Aligned_cols=289 Identities=18% Similarity=0.213 Sum_probs=207.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCC-----CCCCCCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAAN-----VPPPYALASISALQFDHYGHRFASAALDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs-----~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVr 2296 (2548)
+++++|||.|.+.++|+...+.+|.....-..++.-...+..+ .+...|.+.|+|.+|+|+|.++++|+.|++|+
T Consensus 35 irav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik 114 (350)
T KOG0641|consen 35 IRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIK 114 (350)
T ss_pred eeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEE
Confidence 7999999999999999999999998654311110000000000 14556889999999999999999999999999
Q ss_pred EEEcCCCcccccccCccceeccCCcccEE--EE----cCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeE
Q 000054 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVS--YI----TSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGAR 2370 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~--af----SpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~Vt 2370 (2548)
+...+...+.... ....+..|...|. +| ...|.+++++| -.|..|++-|... ++..+.+.+|++-|.
T Consensus 115 ~l~fn~dt~~~~g---~dle~nmhdgtirdl~fld~~~s~~~il~s~g--agdc~iy~tdc~~--g~~~~a~sghtghil 187 (350)
T KOG0641|consen 115 VLPFNADTCNATG---HDLEFNMHDGTIRDLAFLDDPESGGAILASAG--AGDCKIYITDCGR--GQGFHALSGHTGHIL 187 (350)
T ss_pred EEecccccccccC---cceeeeecCCceeeeEEecCCCcCceEEEecC--CCcceEEEeecCC--CCcceeecCCcccEE
Confidence 9887655433222 2334666777665 33 22467888887 3577777777765 788999999999999
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecC---CCCCCCccccccccCCCCCC--ccCCCCCce
Q 000054 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHS---DRGGSSINTCAHADAQTGSG--SKPGDQNGM 2445 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~---~~~~s~~~~~~vafSpdGk~--v~s~D~sv~ 2445 (2548)
++--.. +-++++|+.|.+|++||+|. ..++.++.+ ..+-.......++..|.|++ .+-.|....
T Consensus 188 alyswn--------~~m~~sgsqdktirfwdlrv---~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~ 256 (350)
T KOG0641|consen 188 ALYSWN--------GAMFASGSQDKTIRFWDLRV---NSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCM 256 (350)
T ss_pred EEEEec--------CcEEEccCCCceEEEEeeec---cceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceE
Confidence 885322 44999999999999999874 344444422 22223344566788999998 455667778
Q ss_pred EEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecE
Q 000054 2446 LWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGV 2517 (2548)
Q Consensus 2446 Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~V 2517 (2548)
+||+ +..|...|.|+.|+|...|++|++.|..|++=|++ |.+.++++. -....|.+. +
T Consensus 257 lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq-gdla~el~~---------~vv~ehkdk----~ 322 (350)
T KOG0641|consen 257 LYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ-GDLAHELPI---------MVVAEHKDK----A 322 (350)
T ss_pred EEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc-cchhhcCce---------EEEEeccCc----e
Confidence 8875 45699999999999999999999999999999986 444333310 001224332 3
Q ss_pred EEEEEcCCe--EEEEECCCcEEEEECC
Q 000054 2518 TDIQVVSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2518 tsLafSPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
..+.|+|.. +++.++|.++.+|-+.
T Consensus 323 i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 323 IQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEEecCccceeeeccCcceEEEeccC
Confidence 466999998 9999999999999875
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-20 Score=231.46 Aligned_cols=256 Identities=22% Similarity=0.255 Sum_probs=210.6
Q ss_pred cCCCCccCCeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe
Q 000054 2211 VDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA 2290 (2548)
Q Consensus 2211 v~p~~tl~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS 2290 (2548)
+.+.++++...+.+..|-|.++++++|...|.+.+||+.....+.+++ .|.+.|++++.+||+..++||+
T Consensus 404 ~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~----------AHdgaIWsi~~~pD~~g~vT~s 473 (888)
T KOG0306|consen 404 LKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR----------AHDGAIWSISLSPDNKGFVTGS 473 (888)
T ss_pred cceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh----------ccccceeeeeecCCCCceEEec
Confidence 344556666668899999999999999999999999999887776653 3669999999999999999999
Q ss_pred CCCcEEEEEcCCCcc-----cccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee
Q 000054 2291 LDGTVCTWQLEVGGR-----SNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT 2363 (2548)
Q Consensus 2291 ~DGtVrVWDl~tgk~-----i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~ 2363 (2548)
.|.+|++||..--.. ..........++ .-..+|.| +||||+++|++- -|++|+||-+.+ .+...++.
T Consensus 474 aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsL---LdnTVkVyflDt--lKFflsLY 547 (888)
T KOG0306|consen 474 ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSL---LDNTVKVYFLDT--LKFFLSLY 547 (888)
T ss_pred CCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCcEEEEEe---ccCeEEEEEecc--eeeeeeec
Confidence 999999999752211 000000011111 12345554 899999999985 899999999986 67778889
Q ss_pred ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCC
Q 000054 2364 CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQN 2443 (2548)
Q Consensus 2364 gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~s 2443 (2548)
||.=+|.|+..+|+ +++++|||.|++|++|- ++-|.|.+.+
T Consensus 548 GHkLPV~smDIS~D-------SklivTgSADKnVKiWG---LdFGDCHKS~----------------------------- 588 (888)
T KOG0306|consen 548 GHKLPVLSMDISPD-------SKLIVTGSADKNVKIWG---LDFGDCHKSF----------------------------- 588 (888)
T ss_pred ccccceeEEeccCC-------cCeEEeccCCCceEEec---cccchhhhhh-----------------------------
Confidence 99999999999999 78999999999999999 5568887776
Q ss_pred ceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEc
Q 000054 2444 GMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVV 2523 (2548)
Q Consensus 2444 v~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafS 2523 (2548)
.+|+..|.+|.|-|....++|+|.||.|+-||-...+.++++ .||... |++++.+
T Consensus 589 -------fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L--------------~~H~~e----v~cLav~ 643 (888)
T KOG0306|consen 589 -------FAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKL--------------DGHHSE----VWCLAVS 643 (888)
T ss_pred -------hcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheee--------------ccchhe----eeeeEEc
Confidence 789999999999999999999999999999999988888877 677654 4667999
Q ss_pred CCe--EEEEECCCcEEEEECCCCcc
Q 000054 2524 SRG--FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2524 PdG--LaSGS~DGtIrIWDL~sg~l 2546 (2548)
|+| ++|+|.|.+||+|.-.+..+
T Consensus 644 ~~G~~vvs~shD~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 644 PNGSFVVSSSHDKSIRLWERTDEIL 668 (888)
T ss_pred CCCCeEEeccCCceeEeeeccCcce
Confidence 999 88999999999999876543
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.9e-21 Score=227.23 Aligned_cols=226 Identities=19% Similarity=0.316 Sum_probs=184.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|+++.|+++|.++++|+.+|.|++|+..-...... .+ .|...|++++|+|+...|++|+.||+|+|||..
T Consensus 141 Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~----~a------hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~ 210 (464)
T KOG0284|consen 141 VRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII----QA------HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR 210 (464)
T ss_pred ceeEEEccCCCEEEEcCCCceEEecccchhhhHHh----hH------hhhhhhheeccCCCCceeEEecCCCeEEEEecc
Confidence 79999999999999999999999999775432211 12 255899999999999999999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
..+.. ..+.+|..+|.+ |.|...+|+++| .|..|++||.++ +.++.++.+|...|..+.|+++
T Consensus 211 ~~kee--------~vL~GHgwdVksvdWHP~kgLiasgs---kDnlVKlWDprS--g~cl~tlh~HKntVl~~~f~~n-- 275 (464)
T KOG0284|consen 211 MPKEE--------RVLRGHGWDVKSVDWHPTKGLIASGS---KDNLVKLWDPRS--GSCLATLHGHKNTVLAVKFNPN-- 275 (464)
T ss_pred CCchh--------heeccCCCCcceeccCCccceeEEcc---CCceeEeecCCC--cchhhhhhhccceEEEEEEcCC--
Confidence 66533 236899998876 889999999986 899999999998 7899999999999999999999
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCC---CccCCCCCceEEEcc------
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGS---GSKPGDQNGMLWYIP------ 2450 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk---~v~s~D~sv~Iwdi~------ 2450 (2548)
+++|+|+|.|..++++|+|.++. +..++ ++ ......++++|-.. .+++.|+.+..|.+.
T Consensus 276 -----~N~Llt~skD~~~kv~DiR~mkE---l~~~r---~H-kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~ 343 (464)
T KOG0284|consen 276 -----GNWLLTGSKDQSCKVFDIRTMKE---LFTYR---GH-KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG 343 (464)
T ss_pred -----CCeeEEccCCceEEEEehhHhHH---HHHhh---cc-hhhheeeccccccccceeeccCCCceEEEecccccccc
Confidence 79999999999999999884332 22221 11 11233455555422 278889999888743
Q ss_pred ---cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 000054 2451 ---KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2451 ---~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
.+|...|++++|+|-|.+|++|+.|.++++|.-.
T Consensus 344 ~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 344 EIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred CCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 5799999999999999999999999999999753
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=206.04 Aligned_cols=238 Identities=16% Similarity=0.249 Sum_probs=185.7
Q ss_pred EEEEEcCC-CCEEEE--E-----ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCC
Q 000054 2223 RAFSSHPL-RPFFLV--G-----SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDG 2293 (2548)
Q Consensus 2223 ~~VsfSPd-G~~LAS--G-----S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DG 2293 (2548)
.++.|+|- .++||. + ...|++.|-+...+.-+..+..+. -.+.+.+++|+++ .+.+++++.||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d--------~~D~LfdV~Wse~~e~~~~~a~GDG 83 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD--------TEDGLFDVAWSENHENQVIAASGDG 83 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee--------cccceeEeeecCCCcceEEEEecCc
Confidence 46677772 223332 2 457889999997555555443322 1378999999995 67899999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEEE--cC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeE
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYI--TS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGAR 2370 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~af--Sp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~Vt 2370 (2548)
++++||.... ..+..+++.|...|.++ ++ .+..++++ |.|++|++||... .+.+.++.+|..-|.
T Consensus 84 SLrl~d~~~~-------s~Pi~~~kEH~~EV~Svdwn~~~r~~~lts---SWD~TiKLW~~~r--~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 84 SLRLFDLTMP-------SKPIHKFKEHKREVYSVDWNTVRRRIFLTS---SWDGTIKLWDPNR--PNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEeccCCC-------CcchhHHHhhhhheEEeccccccceeEEee---ccCCceEeecCCC--CcceEeecCCccEEE
Confidence 9999995422 23456789999999874 44 34456665 5999999999976 678999999999999
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcc
Q 000054 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP 2450 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~ 2450 (2548)
...|+|.. .+++++++.||++++||+|. .|+.+. +
T Consensus 152 ~a~~sp~~------~nlfas~Sgd~~l~lwdvr~--~gk~~~-i------------------------------------ 186 (311)
T KOG0277|consen 152 QAAFSPHI------PNLFASASGDGTLRLWDVRS--PGKFMS-I------------------------------------ 186 (311)
T ss_pred EEecCCCC------CCeEEEccCCceEEEEEecC--CCceeE-E------------------------------------
Confidence 99999996 88999999999999999874 244433 3
Q ss_pred cCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCC-cEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--
Q 000054 2451 KAHLGSVTRISTVP-NTSLFLTGSKDGDVKLWDAKAA-QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-- 2526 (2548)
Q Consensus 2451 ~gH~~~VtsLafSP-dG~~LaSGS~DGtIrIWDl~Tg-ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-- 2526 (2548)
..|...|.++.|+. +...|+||+.|+.|++||++.- .++.++ .||+ -+|..++|||..
T Consensus 187 ~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL--------------~gh~----~AVRkvk~Sph~~~ 248 (311)
T KOG0277|consen 187 EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFEL--------------NGHG----LAVRKVKFSPHHAS 248 (311)
T ss_pred EeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceee--------------cCCc----eEEEEEecCcchhh
Confidence 67999999999998 6689999999999999999863 444444 6777 346777999988
Q ss_pred -EEEEECCCcEEEEECCC
Q 000054 2527 -FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2527 -LaSGS~DGtIrIWDL~s 2543 (2548)
|+|++.|-++||||...
T Consensus 249 lLaSasYDmT~riw~~~~ 266 (311)
T KOG0277|consen 249 LLASASYDMTVRIWDPER 266 (311)
T ss_pred HhhhccccceEEeccccc
Confidence 89999999999999874
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.9e-20 Score=237.77 Aligned_cols=234 Identities=23% Similarity=0.390 Sum_probs=200.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+..|+ +.++++|+.|.++++||..++..+.. +..+|.+.|+++++...+.++++|+.|.++++||..
T Consensus 211 ~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~---------~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 211 VLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT---------RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS 279 (537)
T ss_pred hhhheee--cCeEEecCCCceeEEeecccceEEEe---------eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC
Confidence 6777776 67899999999999999999887766 123477999999999889999999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
+|++.. .+.+|...|.++.-.+.++++| |.|.+|++|++.+ +.++..+.+|.+.|+++..+.+
T Consensus 280 sg~C~~--------~l~gh~stv~~~~~~~~~~~sg---s~D~tVkVW~v~n--~~~l~l~~~h~~~V~~v~~~~~---- 342 (537)
T KOG0274|consen 280 TGECTH--------SLQGHTSSVRCLTIDPFLLVSG---SRDNTVKVWDVTN--GACLNLLRGHTGPVNCVQLDEP---- 342 (537)
T ss_pred CCcEEE--------EecCCCceEEEEEccCceEeec---cCCceEEEEeccC--cceEEEeccccccEEEEEecCC----
Confidence 998654 4789999999988777777776 4999999999986 7889999899999999998733
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEE
Q 000054 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRIS 2461 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLa 2461 (2548)
++++|+.||+|++|| ..+++++..+ ++|.++|+++.
T Consensus 343 -----~lvsgs~d~~v~VW~---~~~~~cl~sl------------------------------------~gH~~~V~sl~ 378 (537)
T KOG0274|consen 343 -----LLVSGSYDGTVKVWD---PRTGKCLKSL------------------------------------SGHTGRVYSLI 378 (537)
T ss_pred -----EEEEEecCceEEEEE---hhhceeeeee------------------------------------cCCcceEEEEE
Confidence 999999999999999 4578888887 88999999998
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCC-cEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEECCCcEEEEE
Q 000054 2462 TVPNTSLFLTGSKDGDVKLWDAKAA-QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2462 fSPdG~~LaSGS~DGtIrIWDl~Tg-ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS~DGtIrIWD 2540 (2548)
+.+. ..+++|+.|++|++||+.+. +++.++ .+|...+ .++.+...-|++++.||+|++||
T Consensus 379 ~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl--------------~~h~~~v----~~l~~~~~~Lvs~~aD~~Ik~WD 439 (537)
T KOG0274|consen 379 VDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL--------------QGHTSLV----SSLLLRDNFLVSSSADGTIKLWD 439 (537)
T ss_pred ecCc-ceEEeeeeccceEeecCCchhhhhhhh--------------cCCcccc----cccccccceeEeccccccEEEee
Confidence 8665 89999999999999999999 787766 6777544 44455455599999999999999
Q ss_pred CCCCcc
Q 000054 2541 LEDYQH 2546 (2548)
Q Consensus 2541 L~sg~l 2546 (2548)
..++..
T Consensus 440 ~~~~~~ 445 (537)
T KOG0274|consen 440 AEEGEC 445 (537)
T ss_pred cccCce
Confidence 987753
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-19 Score=220.43 Aligned_cols=267 Identities=19% Similarity=0.272 Sum_probs=208.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|..++|+|..++=++....-.|.||+..+.....++..+. +.|.++.|-.||++++.|+..|.|+++|..
T Consensus 29 vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk----------~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 29 VSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFK----------DVVYSVDFRSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred ceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhc----------cceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence 7889999988765555555679999988877666655433 789999999999999999999999999965
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
+.. ....+.+|..++.. |+|+++.+++.| ++|+.+++||+.+ ......+.+|++.|.|.+++|.+
T Consensus 99 ~r~--------iLR~~~ah~apv~~~~f~~~d~t~l~s~--sDd~v~k~~d~s~--a~v~~~l~~htDYVR~g~~~~~~- 165 (487)
T KOG0310|consen 99 SRV--------ILRQLYAHQAPVHVTKFSPQDNTMLVSG--SDDKVVKYWDLST--AYVQAELSGHTDYVRCGDISPAN- 165 (487)
T ss_pred cHH--------HHHHHhhccCceeEEEecccCCeEEEec--CCCceEEEEEcCC--cEEEEEecCCcceeEeeccccCC-
Confidence 421 12347788887764 888776555544 5999999999986 33456888999999999999985
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCC-CccCCCCCceEEEccc-------
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGS-GSKPGDQNGMLWYIPK------- 2451 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk-~v~s~D~sv~Iwdi~~------- 2451 (2548)
..+++|||.||+|++||+|. .+ ..+..+ .+..+... +.+-|.|. ++..+.+.+++||+..
T Consensus 166 -----~hivvtGsYDg~vrl~DtR~-~~-~~v~el----nhg~pVe~-vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~ 233 (487)
T KOG0310|consen 166 -----DHIVVTGSYDGKVRLWDTRS-LT-SRVVEL----NHGCPVES-VLALPSGSLIASAGGNSVKVWDLTTGGQLLTS 233 (487)
T ss_pred -----CeEEEecCCCceEEEEEecc-CC-ceeEEe----cCCCceee-EEEcCCCCEEEEcCCCeEEEEEecCCceehhh
Confidence 77999999999999999884 33 444444 12223333 34445544 4667778899999753
Q ss_pred --CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--E
Q 000054 2452 --AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--F 2527 (2548)
Q Consensus 2452 --gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--L 2527 (2548)
.|...|+|+++..++..|++||-||.|+|||+.+-+.++.+. ..++|.+++.+|++ +
T Consensus 234 ~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-------------------~~~pvLsiavs~dd~t~ 294 (487)
T KOG0310|consen 234 MFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-------------------YPGPVLSIAVSPDDQTV 294 (487)
T ss_pred hhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-------------------cccceeeEEecCCCceE
Confidence 389999999999999999999999999999998888888772 22557899999988 9
Q ss_pred EEEECCCcEEEEECC
Q 000054 2528 LSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2528 aSGS~DGtIrIWDL~ 2542 (2548)
+.|..||.+-+-+..
T Consensus 295 viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 295 VIGMSNGLVSIRRRE 309 (487)
T ss_pred EEecccceeeeehhh
Confidence 999999998776443
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-20 Score=223.29 Aligned_cols=271 Identities=15% Similarity=0.247 Sum_probs=195.6
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DGtVrVWD 2299 (2548)
|..+.+.|+.+ .+|+++..+.|.|||..+........+--.-.++..+|.+.-+++.|++. .-.+++|+.|++|++||
T Consensus 127 VnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwd 206 (422)
T KOG0264|consen 127 VNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWD 206 (422)
T ss_pred chhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEe
Confidence 57777888766 55567889999999987643332211000001133456667788999984 55799999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEE--EEcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEcc
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVS--YITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~--afSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
+....... ........+.+|...|. +|++ +..+|+++| +|+.+.|||+|+...++.+...+|++.|+|++|+|
T Consensus 207 i~~~~~~~-~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~---dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp 282 (422)
T KOG0264|consen 207 INAESKED-KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG---DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNP 282 (422)
T ss_pred ccccccCC-ccccceEEeecCCcceehhhccccchhhheeec---CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCC
Confidence 98665421 11223455888988775 3554 567888887 99999999999644667888899999999999999
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCC
Q 000054 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGS 2456 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~ 2456 (2548)
-+ +.+|||||.|++|++||+|.+.. ++.++ .+|...
T Consensus 283 ~~------~~ilAT~S~D~tV~LwDlRnL~~--~lh~~------------------------------------e~H~de 318 (422)
T KOG0264|consen 283 FN------EFILATGSADKTVALWDLRNLNK--PLHTF------------------------------------EGHEDE 318 (422)
T ss_pred CC------CceEEeccCCCcEEEeechhccc--Cceec------------------------------------cCCCcc
Confidence 96 88999999999999999986443 33333 889999
Q ss_pred EEEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEEEC
Q 000054 2457 VTRISTVPN-TSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGG 2532 (2548)
Q Consensus 2457 VtsLafSPd-G~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~ 2532 (2548)
|.+|.|+|+ ...|++++.|+.+.|||+..-...+.-.....+..-+.-+-.||. +.|.++.|+|+. |+|.+.
T Consensus 319 v~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~----~kV~DfsWnp~ePW~I~Svae 394 (422)
T KOG0264|consen 319 VFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHT----AKVSDFSWNPNEPWTIASVAE 394 (422)
T ss_pred eEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcc----cccccccCCCCCCeEEEEecC
Confidence 999999995 578999999999999999752222211011111110011124454 446788999999 889999
Q ss_pred CCcEEEEECCCC
Q 000054 2533 DGSVKLIQLEDY 2544 (2548)
Q Consensus 2533 DGtIrIWDL~sg 2544 (2548)
|+.+.||+....
T Consensus 395 DN~LqIW~~s~~ 406 (422)
T KOG0264|consen 395 DNILQIWQMAEN 406 (422)
T ss_pred CceEEEeecccc
Confidence 999999998754
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.2e-20 Score=211.20 Aligned_cols=262 Identities=19% Similarity=0.257 Sum_probs=191.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCC------CceeEEEeccCCCCC--CCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGK------DKATATYGVLPAANV--PPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~t------g~~l~t~~~l~ghs~--~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
+++.+|+|||.++|+|+.|.+|+|.|++. .+.+..-+....|++ ..-.|.+.|+++.|+|....|++|+.|+
T Consensus 115 cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~ 194 (430)
T KOG0640|consen 115 CRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDN 194 (430)
T ss_pred eeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCC
Confidence 79999999999999999999999999872 111111011111111 1233779999999999999999999999
Q ss_pred cEEEEEcCCCcccccccCccceeccC-CcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCccee---eeccCCCe
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSS-HAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRAS---ITCHEGGA 2369 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~g-H~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~s---l~gHs~~V 2369 (2548)
+|+++|........ ..+.++. +.-...+|.|.|.++++|. +..++++||+.+ .++... -.+|++.|
T Consensus 195 tvKlFDfsK~saKr-----A~K~~qd~~~vrsiSfHPsGefllvgT---dHp~~rlYdv~T--~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 195 TVKLFDFSKTSAKR-----AFKVFQDTEPVRSISFHPSGEFLLVGT---DHPTLRLYDVNT--YQCFVSANPDDQHTGAI 264 (430)
T ss_pred eEEEEecccHHHHH-----HHHHhhccceeeeEeecCCCceEEEec---CCCceeEEeccc--eeEeeecCcccccccce
Confidence 99999997542111 1111221 2222235899999999985 788999999986 444322 23799999
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEc
Q 000054 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYI 2449 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi 2449 (2548)
++|.+++. +++.++|+.||.|++|| --+++|+.++.
T Consensus 265 ~~V~Ys~t-------~~lYvTaSkDG~IklwD---GVS~rCv~t~~---------------------------------- 300 (430)
T KOG0640|consen 265 TQVRYSST-------GSLYVTASKDGAIKLWD---GVSNRCVRTIG---------------------------------- 300 (430)
T ss_pred eEEEecCC-------ccEEEEeccCCcEEeec---cccHHHHHHHH----------------------------------
Confidence 99999998 88999999999999999 67788887761
Q ss_pred ccCCCC-CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccc-------ccccccc--------cC---------
Q 000054 2450 PKAHLG-SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKL-------HERHTFL--------QP--------- 2504 (2548)
Q Consensus 2450 ~~gH~~-~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~-------Hs~hsfl--------~~--------- 2504 (2548)
.+|.+ .|.+..|..+|+|+++.|.|..+++|.+.+|+++.++.+. |..+-.| .+
T Consensus 301 -~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcs 379 (430)
T KOG0640|consen 301 -NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCS 379 (430)
T ss_pred -hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceee
Confidence 45654 6788888889999999999999999999999888888652 1110000 00
Q ss_pred -----------cccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECC
Q 000054 2505 -----------SSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2505 -----------tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
.--||.+.+ ..+.-||.+ ++|||.|-.+|+|--.
T Consensus 380 WdaRtadr~~l~slgHn~a~----R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 380 WDARTADRVALLSLGHNGAV----RWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ccccchhhhhhcccCCCCCc----eEEEeCCCCCceeeecccceeeeeeec
Confidence 024566544 455788998 9999999999999743
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-18 Score=226.28 Aligned_cols=254 Identities=17% Similarity=0.187 Sum_probs=183.9
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccC---CCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEE
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLP---AANVPPPYALASISALQFDH-YGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~---ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVW 2298 (2548)
.....++++..+++++.+..+..|+...+..+..+.... .......+|.+.|++++|+| ++++|++|+.||+|++|
T Consensus 24 ~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIW 103 (493)
T PTZ00421 24 TPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGW 103 (493)
T ss_pred ccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEE
Confidence 344455777778888888888888876554332221110 00011346889999999999 88999999999999999
Q ss_pred EcCCCcccccccCccceeccCCcccEEE--EcCCC-CEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEc
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSG-SVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdG-slLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafs 2375 (2548)
|+.++.... ........+.+|...|.+ |+|++ ++|++++ .|++|+|||+.. ++.+..+.+|.+.|.+++|+
T Consensus 104 di~~~~~~~-~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs---~DgtVrIWDl~t--g~~~~~l~~h~~~V~sla~s 177 (493)
T PTZ00421 104 GIPEEGLTQ-NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG---ADMVVNVWDVER--GKAVEVIKCHSDQITSLEWN 177 (493)
T ss_pred ecCCCcccc-ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe---CCCEEEEEECCC--CeEEEEEcCCCCceEEEEEE
Confidence 998653211 111234567889988874 88875 6888886 899999999986 56778888999999999999
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCC
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG 2455 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~ 2455 (2548)
|+ +.+|++|+.||+|++||+| +++.+..+ .+|.+
T Consensus 178 pd-------G~lLatgs~Dg~IrIwD~r---sg~~v~tl------------------------------------~~H~~ 211 (493)
T PTZ00421 178 LD-------GSLLCTTSKDKKLNIIDPR---DGTIVSSV------------------------------------EAHAS 211 (493)
T ss_pred CC-------CCEEEEecCCCEEEEEECC---CCcEEEEE------------------------------------ecCCC
Confidence 98 7899999999999999965 45555554 55665
Q ss_pred C-EEEEEEeCCCCEEEEEe----CCCcEEEEECCCCc-EEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--E
Q 000054 2456 S-VTRISTVPNTSLFLTGS----KDGDVKLWDAKAAQ-LVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--F 2527 (2548)
Q Consensus 2456 ~-VtsLafSPdG~~LaSGS----~DGtIrIWDl~Tge-ll~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--L 2527 (2548)
. +..+.|.+++..+++++ .|+.|++||+++.. ++... ..+.. ..+....|++++ +
T Consensus 212 ~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~--------------~~d~~---~~~~~~~~d~d~~~L 274 (493)
T PTZ00421 212 AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTV--------------DLDQS---SALFIPFFDEDTNLL 274 (493)
T ss_pred CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEe--------------ccCCC---CceEEEEEcCCCCEE
Confidence 4 44677899888877765 47999999998654 33222 11111 223445789998 6
Q ss_pred EEEE-CCCcEEEEECCCCc
Q 000054 2528 LSCG-GDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2528 aSGS-~DGtIrIWDL~sg~ 2545 (2548)
++|| .||+|++||+.++.
T Consensus 275 ~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 275 YIGSKGEGNIRCFELMNER 293 (493)
T ss_pred EEEEeCCCeEEEEEeeCCc
Confidence 6666 69999999998764
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.4e-20 Score=211.13 Aligned_cols=237 Identities=20% Similarity=0.250 Sum_probs=185.6
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCC
Q 000054 2267 PPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGI 2344 (2548)
Q Consensus 2267 ~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DG 2344 (2548)
.++|.+.|+.+.|+|+|.+|+||+.|..|.+|++.... .+ .....+|.+.|.. +..|++.++++| .|+
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-eN------~~~lkgHsgAVM~l~~~~d~s~i~S~g---tDk 112 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-EN------FWVLKGHSGAVMELHGMRDGSHILSCG---TDK 112 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc-cc------eeeeccccceeEeeeeccCCCEEEEec---CCc
Confidence 35677999999999999999999999999999986432 22 2236799999985 889999999997 899
Q ss_pred eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcc
Q 000054 2345 NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSIN 2424 (2548)
Q Consensus 2345 tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~ 2424 (2548)
+|+.||.++ ++.+..+++|.+-|+++.-...+ ..++.||+.||++++||+|. ..+++++ .....
T Consensus 113 ~v~~wD~~t--G~~~rk~k~h~~~vNs~~p~rrg------~~lv~SgsdD~t~kl~D~R~---k~~~~t~-----~~kyq 176 (338)
T KOG0265|consen 113 TVRGWDAET--GKRIRKHKGHTSFVNSLDPSRRG------PQLVCSGSDDGTLKLWDIRK---KEAIKTF-----ENKYQ 176 (338)
T ss_pred eEEEEeccc--ceeeehhccccceeeecCccccC------CeEEEecCCCceEEEEeecc---cchhhcc-----cccee
Confidence 999999998 78999999999999999843332 45788999999999999873 2333332 11223
Q ss_pred ccccccCCCCCC--ccCCCCCceEEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC----CcEEE
Q 000054 2425 TCAHADAQTGSG--SKPGDQNGMLWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA----AQLVY 2490 (2548)
Q Consensus 2425 ~~~vafSpdGk~--v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~T----gell~ 2490 (2548)
...+.|..++.. .++-|+.+++|+. ..||...|+.+..+|+|.++.+-+.|.++++||++- .+++.
T Consensus 177 ltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~ 256 (338)
T KOG0265|consen 177 LTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVK 256 (338)
T ss_pred EEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEE
Confidence 455667666554 7888999999985 579999999999999999999999999999999973 33355
Q ss_pred EecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCC
Q 000054 2491 HWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2491 tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~s 2543 (2548)
.+ .||.-...--...++|+|++ +.+|+.|..+++||...
T Consensus 257 if--------------~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 257 IF--------------QGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred Ee--------------ecchhhhhhhcceeeccCCCCccccccccceEEEeeccc
Confidence 44 23221111112355899999 77999999999999876
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-19 Score=204.78 Aligned_cols=226 Identities=17% Similarity=0.266 Sum_probs=181.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc--eeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK--ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~--~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
|+.++|+|.|++|++|+.|.++.||.-..++ ++.++ .| |...|.+++|+++|++||||+.|++|-+|.
T Consensus 64 VRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~l---EG-------HEnEVK~Vaws~sG~~LATCSRDKSVWiWe 133 (312)
T KOG0645|consen 64 VRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATL---EG-------HENEVKCVAWSASGNYLATCSRDKSVWIWE 133 (312)
T ss_pred eeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeee---ec-------cccceeEEEEcCCCCEEEEeeCCCeEEEEE
Confidence 7999999999999999999999999976543 34443 33 559999999999999999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECC-CCCCCcceeeeccCCCeEEEEEcc
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTL-APPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~-t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
+..+.. +.....+++|..+|- .|+|...+|++++ .|++|++|+-. .....+++++.+|+..|++++|++
T Consensus 134 ~deddE-----fec~aVL~~HtqDVK~V~WHPt~dlL~S~S---YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~ 205 (312)
T KOG0645|consen 134 IDEDDE-----FECIAVLQEHTQDVKHVIWHPTEDLLFSCS---YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN 205 (312)
T ss_pred ecCCCc-----EEEEeeeccccccccEEEEcCCcceeEEec---cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC
Confidence 986543 234456889998885 4899999999985 89999999877 444678999999999999999999
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEEc------
Q 000054 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWYI------ 2449 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwdi------ 2449 (2548)
. |..|++++.|++|+||-.+..-++...+. .-.+++. +|.+ .+++|+.++++..
T Consensus 206 ~-------G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~-----------~Y~v~W~-~~~IaS~ggD~~i~lf~~s~~~d~ 266 (312)
T KOG0645|consen 206 I-------GSRLVSCSDDGTVSIWRLYTDLSGMHSRA-----------LYDVPWD-NGVIASGGGDDAIRLFKESDSPDE 266 (312)
T ss_pred C-------CceEEEecCCcceEeeeeccCcchhcccc-----------eEeeeec-ccceEeccCCCEEEEEEecCCCCC
Confidence 8 78999999999999998542111111111 1123444 5555 6778888888862
Q ss_pred ---------ccCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECC
Q 000054 2450 ---------PKAHLGSVTRISTVPN-TSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2450 ---------~~gH~~~VtsLafSPd-G~~LaSGS~DGtIrIWDl~ 2484 (2548)
...|+..|++++|+|. ...|++||.||.|++|.+.
T Consensus 267 p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 267 PSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred chHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 2368999999999995 6899999999999999874
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-20 Score=209.91 Aligned_cols=271 Identities=18% Similarity=0.223 Sum_probs=219.5
Q ss_pred EEEEEEcC---CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 000054 2222 TRAFSSHP---LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSP---dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVW 2298 (2548)
|..++|+| +|-+|++++.||.-.+-+-++|.-+.+|.+ |.+.|++...+.+..+-++++.|=+-++|
T Consensus 17 vvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeg----------hkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 17 VVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEG----------HKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred eeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeec----------cCcceeeeecCchhhhhhhhcccchhhhh
Confidence 68888875 788999999999999999899999999864 66999999999999999999999999999
Q ss_pred EcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCC
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
|.-+|..+... -..|.-.-++|+.|.+.|++|| .++.++|+|++.+ ..+...+.+|+++|..+.|...
T Consensus 87 ~a~tgdelhsf-------~hkhivk~~af~~ds~~lltgg---~ekllrvfdln~p-~App~E~~ghtg~Ir~v~wc~e- 154 (334)
T KOG0278|consen 87 DAVTGDELHSF-------EHKHIVKAVAFSQDSNYLLTGG---QEKLLRVFDLNRP-KAPPKEISGHTGGIRTVLWCHE- 154 (334)
T ss_pred hhhhhhhhhhh-------hhhheeeeEEecccchhhhccc---hHHHhhhhhccCC-CCCchhhcCCCCcceeEEEecc-
Confidence 99988654321 1234444456999999999998 8999999999875 4566788899999999999887
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCc-cCCCCCceEEEccc------
Q 000054 2379 LGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGS-KPGDQNGMLWYIPK------ 2451 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v-~s~D~sv~Iwdi~~------ 2451 (2548)
.+.+++.+.|++||+||. .++..++.+... .....+-++++|+++ ....+.+..|+...
T Consensus 155 ------D~~iLSSadd~tVRLWD~---rTgt~v~sL~~~-----s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs 220 (334)
T KOG0278|consen 155 ------DKCILSSADDKTVRLWDH---RTGTEVQSLEFN-----SPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKS 220 (334)
T ss_pred ------CceEEeeccCCceEEEEe---ccCcEEEEEecC-----CCCcceeeccCCCEEEEecCceeEEeccccccceee
Confidence 467888899999999994 567777776221 223456788999994 44556678887421
Q ss_pred -CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EE
Q 000054 2452 -AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FL 2528 (2548)
Q Consensus 2452 -gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--La 2528 (2548)
.-.-.|.+..++|+...+++|+.|+.++.||..+|+.+..+ -+||.++ |.++.|+|+| .+
T Consensus 221 ~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-------------nkgh~gp----VhcVrFSPdGE~yA 283 (334)
T KOG0278|consen 221 YKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-------------NKGHFGP----VHCVRFSPDGELYA 283 (334)
T ss_pred ccCccccccccccCCCceEEecCcceEEEEEeccCCceeeec-------------ccCCCCc----eEEEEECCCCceee
Confidence 12346888999999999999999999999999999988754 2677754 5677999999 78
Q ss_pred EEECCCcEEEEECCCCc
Q 000054 2529 SCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2529 SGS~DGtIrIWDL~sg~ 2545 (2548)
+||.||+||+|....+.
T Consensus 284 sGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 284 SGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ccCCCceEEEEEecCCC
Confidence 99999999999986553
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-20 Score=208.72 Aligned_cols=235 Identities=17% Similarity=0.211 Sum_probs=184.1
Q ss_pred EEEEEEcCCC-CEEEEEECCCeEEEEEcCC-CceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEE
Q 000054 2222 TRAFSSHPLR-PFFLVGSSNTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG-~~LASGS~DGsVrLWDl~t-g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVW 2298 (2548)
...++|+++. +.+++++.||+++|||... ..++..+++ |...|.++.|++ ++..+++++.||+|++|
T Consensus 63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kE----------H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW 132 (311)
T KOG0277|consen 63 LFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKE----------HKREVYSVDWNTVRRRIFLTSSWDGTIKLW 132 (311)
T ss_pred eeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHh----------hhhheEEeccccccceeEEeeccCCceEee
Confidence 4778888864 5778999999999999653 234444433 568999999998 57778899999999999
Q ss_pred EcCCCcccccccCccceeccCCcccEEE--EcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEc
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafs 2375 (2548)
+...+. +..++.+|...|.. |+| .+++++++ |.|+.+++||++.+ ++... +..|...|.|+.|+
T Consensus 133 ~~~r~~--------Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~---Sgd~~l~lwdvr~~-gk~~~-i~ah~~Eil~cdw~ 199 (311)
T KOG0277|consen 133 DPNRPN--------SVQTFNGHNSCIYQAAFSPHIPNLFASA---SGDGTLRLWDVRSP-GKFMS-IEAHNSEILCCDWS 199 (311)
T ss_pred cCCCCc--------ceEeecCCccEEEEEecCCCCCCeEEEc---cCCceEEEEEecCC-CceeE-EEeccceeEeeccc
Confidence 988654 34569999998874 777 46788887 48999999999985 44444 88999999999999
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCC
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG 2455 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~ 2455 (2548)
.-+ ..+++||+.|+.|+.||+|++.+. +..+ .+|.-
T Consensus 200 ky~------~~vl~Tg~vd~~vr~wDir~~r~p--l~eL------------------------------------~gh~~ 235 (311)
T KOG0277|consen 200 KYN------HNVLATGGVDNLVRGWDIRNLRTP--LFEL------------------------------------NGHGL 235 (311)
T ss_pred ccC------CcEEEecCCCceEEEEehhhcccc--ceee------------------------------------cCCce
Confidence 875 779999999999999999864322 2222 78999
Q ss_pred CEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEE-EEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEE
Q 000054 2456 SVTRISTVPN-TSLFLTGSKDGDVKLWDAKAAQLV-YHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSC 2530 (2548)
Q Consensus 2456 ~VtsLafSPd-G~~LaSGS~DGtIrIWDl~Tgell-~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSG 2530 (2548)
+|+.|+|+|. ..+|++++.|-+++|||...+.-. .+. ..|..- |..+.||+-. +|++
T Consensus 236 AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~--------------~~HtEF----v~g~Dws~~~~~~vAs~ 297 (311)
T KOG0277|consen 236 AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETV--------------DHHTEF----VCGLDWSLFDPGQVAST 297 (311)
T ss_pred EEEEEecCcchhhHhhhccccceEEecccccchhhhhhh--------------hccceE----EeccccccccCceeeec
Confidence 9999999995 578999999999999999854433 222 334422 3455676543 9999
Q ss_pred ECCCcEEEEEC
Q 000054 2531 GGDGSVKLIQL 2541 (2548)
Q Consensus 2531 S~DGtIrIWDL 2541 (2548)
|-|+.++||+.
T Consensus 298 gWDe~l~Vw~p 308 (311)
T KOG0277|consen 298 GWDELLYVWNP 308 (311)
T ss_pred ccccceeeecc
Confidence 99999999984
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-20 Score=217.17 Aligned_cols=267 Identities=15% Similarity=0.250 Sum_probs=206.0
Q ss_pred ccCCeE--EEEEEEcCCC-CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000054 2216 TVENIS--TRAFSSHPLR-PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG-~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
.+.+|. |.|++=||.. ..+++|+.||.|+|||+..-.+..+++. |.+.|..|++.. ..+++++.|
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~A----------H~G~V~Gi~v~~--~~~~tvgdD 128 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKA----------HEGLVRGICVTQ--TSFFTVGDD 128 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeec----------ccCceeeEEecc--cceEEecCC
Confidence 345554 6888988876 6899999999999999998888888754 558999999987 679999999
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeE
Q 000054 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGAR 2370 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~Vt 2370 (2548)
++|+.|.++.. + ..++.+.. .+.. .+..++.++|+| ..|.|||... ..++..+.--.+.|.
T Consensus 129 KtvK~wk~~~~------p---~~tilg~s-~~~gIdh~~~~~~FaTcG-----e~i~IWD~~R--~~Pv~smswG~Dti~ 191 (433)
T KOG0268|consen 129 KTVKQWKIDGP------P---LHTILGKS-VYLGIDHHRKNSVFATCG-----EQIDIWDEQR--DNPVSSMSWGADSIS 191 (433)
T ss_pred cceeeeeccCC------c---ceeeeccc-cccccccccccccccccC-----ceeeeccccc--CCccceeecCCCcee
Confidence 99999998742 1 11121111 1111 234567888876 6799999975 678888887788999
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEE
Q 000054 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWY 2448 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwd 2448 (2548)
++.|+|.. ...|++|+.|+.|.+||+|+ +..++.. ........+.|+|.+.. ++..|.+++.+|
T Consensus 192 svkfNpvE------TsILas~~sDrsIvLyD~R~---~~Pl~KV-----i~~mRTN~IswnPeafnF~~a~ED~nlY~~D 257 (433)
T KOG0268|consen 192 SVKFNPVE------TSILASCASDRSIVLYDLRQ---ASPLKKV-----ILTMRTNTICWNPEAFNFVAANEDHNLYTYD 257 (433)
T ss_pred EEecCCCc------chheeeeccCCceEEEeccc---CCcccee-----eeeccccceecCccccceeeccccccceehh
Confidence 99999985 77999999999999999875 3333222 11123456788885443 788888998888
Q ss_pred c---------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEE
Q 000054 2449 I---------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTD 2519 (2548)
Q Consensus 2449 i---------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vts 2519 (2548)
+ ..+|.++|.+|+|+|.|+-|++||.|.+|+||.++.+.....+ |..+. .-|.+
T Consensus 258 mR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY----------------htkRM-q~V~~ 320 (433)
T KOG0268|consen 258 MRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY----------------HTKRM-QHVFC 320 (433)
T ss_pred hhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhh----------------hHhhh-heeeE
Confidence 4 5689999999999999999999999999999999877655443 22222 44788
Q ss_pred EEEcCCe--EEEEECCCcEEEEECC
Q 000054 2520 IQVVSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2520 LafSPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
+.||-|. ++|||+|+.||+|.-.
T Consensus 321 Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 321 VKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred EEEeccccEEEecCCCcceeeeecc
Confidence 9999998 8899999999999864
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.5e-19 Score=200.33 Aligned_cols=256 Identities=18% Similarity=0.249 Sum_probs=203.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.-+.|+.+|.+|++++.|.++.||-..+|+.+.+|.+ |++.|+++..+-+.+.++||+.|.++++||++
T Consensus 13 lTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~G----------HtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 13 LTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDG----------HTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cceEEecCCCcEEEEecCCCCceEEEecCCceeeeecC----------CCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 57889999999999999999999999999999999854 67999999999999999999999999999999
Q ss_pred CCcccccccCccceeccCCcccE--EEEcCCCCEEEEEecc--CCCCeEEEEECCCCC-----CCcceeeeccCCCeEEE
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHS--SNGINVVVWDTLAPP-----TSSRASITCHEGGARSI 2372 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~S--S~DGtVrIWDl~t~~-----~k~v~sl~gHs~~VtSL 2372 (2548)
+|+.+...+ ....| +.|+++|++++..... ...+.|.++|++..+ .+++..+..+.+.++.+
T Consensus 83 tGk~la~~k---------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a 153 (327)
T KOG0643|consen 83 TGKQLATWK---------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSA 153 (327)
T ss_pred CCcEEEEee---------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeee
Confidence 998654321 12233 3489999988876310 034679999998432 34678888999999999
Q ss_pred EEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccC
Q 000054 2373 SVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKA 2452 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~g 2452 (2548)
.|.|. +..|++|..||.|.+||+| +|+.+.. ..+.
T Consensus 154 ~Wg~l-------~~~ii~Ghe~G~is~~da~---~g~~~v~-----------------------------------s~~~ 188 (327)
T KOG0643|consen 154 LWGPL-------GETIIAGHEDGSISIYDAR---TGKELVD-----------------------------------SDEE 188 (327)
T ss_pred eeccc-------CCEEEEecCCCcEEEEEcc---cCceeee-----------------------------------chhh
Confidence 99998 7899999999999999954 4433222 1256
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccccc------------------------------ccccc
Q 000054 2453 HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHE------------------------------RHTFL 2502 (2548)
Q Consensus 2453 H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs------------------------------~hsfl 2502 (2548)
|...|+.++++|+..+++|||.|.+-++||+.+-++++++..+.. ...|.
T Consensus 189 h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFE 268 (327)
T KOG0643|consen 189 HSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFE 268 (327)
T ss_pred hccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchh
Confidence 889999999999999999999999999999999988888753110 00010
Q ss_pred -----------cCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2503 -----------QPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2503 -----------~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
..-.+||-++| .+++|+|+| .+|||.||.||+.-++.+.
T Consensus 269 ArFyh~i~eEEigrvkGHFGPI----NsvAfhPdGksYsSGGEDG~VR~h~Fd~~Y 320 (327)
T KOG0643|consen 269 ARFYHLIFEEEIGRVKGHFGPI----NSVAFHPDGKSYSSGGEDGYVRLHHFDSNY 320 (327)
T ss_pred hhHHHHHHHHHhccccccccCc----ceeEECCCCcccccCCCCceEEEEEeccch
Confidence 11257888766 455999999 8999999999999887653
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-18 Score=238.07 Aligned_cols=261 Identities=18% Similarity=0.215 Sum_probs=189.4
Q ss_pred CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccC
Q 000054 2240 NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSS 2319 (2548)
Q Consensus 2240 DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~g 2319 (2548)
+|.+++|+..+.+....++. + ....|.+.|.+++|+|+|+++++|+.||+|++|+.+.................+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~--~---~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~ 531 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQ--G---DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS 531 (793)
T ss_pred hhhhhhhcccceEEEEeecc--c---cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc
Confidence 56677787776554433321 0 123467999999999999999999999999999986421100000001111222
Q ss_pred CcccEE--EEcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCc
Q 000054 2320 HAMDVS--YITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGD 2396 (2548)
Q Consensus 2320 H~~~V~--afSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGt 2396 (2548)
+ ..+. +|++ ++.++++++ .||+|++||+.+ ++.+..+.+|.+.|++++|+|.+ +.+|++|+.||+
T Consensus 532 ~-~~v~~l~~~~~~~~~las~~---~Dg~v~lWd~~~--~~~~~~~~~H~~~V~~l~~~p~~------~~~L~Sgs~Dg~ 599 (793)
T PLN00181 532 R-SKLSGICWNSYIKSQVASSN---FEGVVQVWDVAR--SQLVTEMKEHEKRVWSIDYSSAD------PTLLASGSDDGS 599 (793)
T ss_pred c-CceeeEEeccCCCCEEEEEe---CCCeEEEEECCC--CeEEEEecCCCCCEEEEEEcCCC------CCEEEEEcCCCE
Confidence 2 2333 3544 578899886 899999999976 56788889999999999999864 779999999999
Q ss_pred EEEEeCCccccCceeeeecCCCCCCCcccccccc-CCCCCC--ccCCCCCceEEEcc---------cCCCCCEEEEEEeC
Q 000054 2397 VGIHDFRYIATGKTKKHKHSDRGGSSINTCAHAD-AQTGSG--SKPGDQNGMLWYIP---------KAHLGSVTRISTVP 2464 (2548)
Q Consensus 2397 VrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vaf-SpdGk~--v~s~D~sv~Iwdi~---------~gH~~~VtsLafSP 2464 (2548)
|++||+ .++..+..+... .....+.+ +++|.. +++.|+.+++||+. .+|...|.++.|.
T Consensus 600 v~iWd~---~~~~~~~~~~~~-----~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~- 670 (793)
T PLN00181 600 VKLWSI---NQGVSIGTIKTK-----ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV- 670 (793)
T ss_pred EEEEEC---CCCcEEEEEecC-----CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-
Confidence 999995 456666665211 12344555 455766 67788999999852 4688999999997
Q ss_pred CCCEEEEEeCCCcEEEEECCCC------cEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcE
Q 000054 2465 NTSLFLTGSKDGDVKLWDAKAA------QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSV 2536 (2548)
Q Consensus 2465 dG~~LaSGS~DGtIrIWDl~Tg------ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtI 2536 (2548)
++.+|++++.|++|++||++.+ +++.++ .||...+ ..++|+|++ |++|+.||+|
T Consensus 671 ~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~--------------~gh~~~i----~~v~~s~~~~~lasgs~D~~v 732 (793)
T PLN00181 671 DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF--------------MGHTNVK----NFVGLSVSDGYIATGSETNEV 732 (793)
T ss_pred CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE--------------cCCCCCe----eEEEEcCCCCEEEEEeCCCEE
Confidence 7889999999999999999753 334333 6787544 556899988 8999999999
Q ss_pred EEEECCCC
Q 000054 2537 KLIQLEDY 2544 (2548)
Q Consensus 2537 rIWDL~sg 2544 (2548)
++|+....
T Consensus 733 ~iw~~~~~ 740 (793)
T PLN00181 733 FVYHKAFP 740 (793)
T ss_pred EEEECCCC
Confidence 99997543
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.9e-19 Score=228.51 Aligned_cols=234 Identities=21% Similarity=0.327 Sum_probs=194.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.++++...+.++++|+.|.++++||..+|++...+.+ |.+.|.++... +..+++|+.|.+|++|+++
T Consensus 252 V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~g----------h~stv~~~~~~--~~~~~sgs~D~tVkVW~v~ 319 (537)
T KOG0274|consen 252 VWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQG----------HTSSVRCLTID--PFLLVSGSRDNTVKVWDVT 319 (537)
T ss_pred ceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecC----------CCceEEEEEcc--CceEeeccCCceEEEEecc
Confidence 57888766788999999999999999999999999853 56888888765 5668889999999999999
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
++..+. .+.+|...|.++.-++.++++|+ .|++|++||+.+ .+++..+.+|.+.|.++.+.+.
T Consensus 320 n~~~l~--------l~~~h~~~V~~v~~~~~~lvsgs---~d~~v~VW~~~~--~~cl~sl~gH~~~V~sl~~~~~---- 382 (537)
T KOG0274|consen 320 NGACLN--------LLRGHTGPVNCVQLDEPLLVSGS---YDGTVKVWDPRT--GKCLKSLSGHTGRVYSLIVDSE---- 382 (537)
T ss_pred CcceEE--------EeccccccEEEEEecCCEEEEEe---cCceEEEEEhhh--ceeeeeecCCcceEEEEEecCc----
Confidence 887554 36679999999777789999985 899999999986 8999999999999999987662
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccC-ceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEE
Q 000054 2382 GSVSPLIVTGGKGGDVGIHDFRYIATG-KTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRI 2460 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TG-k~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsL 2460 (2548)
..+++|+.|++|++||++ +. +++.++ .+|.+-|.++
T Consensus 383 ----~~~~Sgs~D~~IkvWdl~---~~~~c~~tl------------------------------------~~h~~~v~~l 419 (537)
T KOG0274|consen 383 ----NRLLSGSLDTTIKVWDLR---TKRKCIHTL------------------------------------QGHTSLVSSL 419 (537)
T ss_pred ----ceEEeeeeccceEeecCC---chhhhhhhh------------------------------------cCCccccccc
Confidence 399999999999999954 44 666665 7788888776
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEECCCcEEEEE
Q 000054 2461 STVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2461 afSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS~DGtIrIWD 2540 (2548)
.+ .+++|++++.||+|++||..++++++++... |. ..|+.+++...-+++++.||++++||
T Consensus 420 ~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-------------~~----~~v~~l~~~~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 420 LL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-------------HV----GGVSALALGKEEILCSSDDGSVKLWD 480 (537)
T ss_pred cc--ccceeEeccccccEEEeecccCceeeeeccC-------------Cc----ccEEEeecCcceEEEEecCCeeEEEe
Confidence 65 6789999999999999999999999988311 22 23455555533389999999999999
Q ss_pred CCCCcc
Q 000054 2541 LEDYQH 2546 (2548)
Q Consensus 2541 L~sg~l 2546 (2548)
++++.+
T Consensus 481 l~~~~~ 486 (537)
T KOG0274|consen 481 LRSGTL 486 (537)
T ss_pred cccCch
Confidence 998764
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.8e-19 Score=208.58 Aligned_cols=247 Identities=16% Similarity=0.332 Sum_probs=198.9
Q ss_pred CccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000054 2215 ATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2215 ~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
.++.||- |+.+++++..+|+++++.|+.|+.||+...+.++.|. +|...|.+++.+|.-+.|+||+.|
T Consensus 187 ltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Yh----------GHlS~V~~L~lhPTldvl~t~grD 256 (460)
T KOG0285|consen 187 LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYH----------GHLSGVYCLDLHPTLDVLVTGGRD 256 (460)
T ss_pred EeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhc----------cccceeEEEeccccceeEEecCCc
Confidence 3455543 7899999999999999999999999999988877763 477999999999999999999999
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeE
Q 000054 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGAR 2370 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~Vt 2370 (2548)
.++++||+++... ..++.||...|.. +.|..-.+++| |.|++|++||++. ++....+..|...|.
T Consensus 257 st~RvWDiRtr~~--------V~~l~GH~~~V~~V~~~~~dpqvit~---S~D~tvrlWDl~a--gkt~~tlt~hkksvr 323 (460)
T KOG0285|consen 257 STIRVWDIRTRAS--------VHVLSGHTNPVASVMCQPTDPQVITG---SHDSTVRLWDLRA--GKTMITLTHHKKSVR 323 (460)
T ss_pred ceEEEeeecccce--------EEEecCCCCcceeEEeecCCCceEEe---cCCceEEEeeecc--CceeEeeecccceee
Confidence 9999999997653 3458899998875 44545567777 4999999999987 677788889999999
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcc
Q 000054 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP 2450 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~ 2450 (2548)
+++.+|. ...+++++.| .|+-|+ +..|..+..+
T Consensus 324 al~lhP~-------e~~fASas~d-nik~w~---~p~g~f~~nl------------------------------------ 356 (460)
T KOG0285|consen 324 ALCLHPK-------ENLFASASPD-NIKQWK---LPEGEFLQNL------------------------------------ 356 (460)
T ss_pred EEecCCc-------hhhhhccCCc-cceecc---CCccchhhcc------------------------------------
Confidence 9999999 5678887766 589999 4455555444
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCc-ccCCCCceeecEEEEEEcCCe--E
Q 000054 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPS-SRGFGGVVRAGVTDIQVVSRG--F 2527 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~t-l~GH~~~V~a~VtsLafSPdG--L 2527 (2548)
.+|.+-|.+++.+.|| ++++|++.|.+.+||.++|-..+... +..++. +.+ .++|+..+|+..| |
T Consensus 357 sgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~------t~vqpGSl~s-----EagI~as~fDktg~rl 424 (460)
T KOG0285|consen 357 SGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQ------TIVQPGSLES-----EAGIFASCFDKTGSRL 424 (460)
T ss_pred ccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccccc------ccccCCcccc-----ccceeEEeecccCceE
Confidence 7899999999988765 77899999999999999987766441 111111 111 1457777999999 9
Q ss_pred EEEECCCcEEEEECCC
Q 000054 2528 LSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2528 aSGS~DGtIrIWDL~s 2543 (2548)
+||.+|.+|++|.-+.
T Consensus 425 it~eadKtIk~~keDe 440 (460)
T KOG0285|consen 425 ITGEADKTIKMYKEDE 440 (460)
T ss_pred EeccCCcceEEEeccc
Confidence 9999999999998654
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.3e-18 Score=220.31 Aligned_cols=231 Identities=19% Similarity=0.163 Sum_probs=167.9
Q ss_pred EECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEEcCCCcccccccCccce
Q 000054 2237 GSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCTWQLEVGGRSNVRPMESCL 2315 (2548)
Q Consensus 2237 GS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~ 2315 (2548)
|+.++.|++|+..+...+..+. +|.+.|.+++|+|+ +++|++|+.||+|++||+.++............
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~----------gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~ 119 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLK----------GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQC 119 (568)
T ss_pred CCceeEEEeeecCCCceEEEEc----------CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceE
Confidence 6678899999987765555543 36689999999996 789999999999999999865321101011233
Q ss_pred eccCCcccEEE--EcCCCCEE-EEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe
Q 000054 2316 CFSSHAMDVSY--ITSSGSVI-AAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGG 2392 (2548)
Q Consensus 2316 t~~gH~~~V~a--fSpdGslL-ATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS 2392 (2548)
.+.+|...|.+ |+|++..+ ++++ .|++|+|||++. ++.+..+. |...|.+++|+|+ |.+|++++
T Consensus 120 ~L~gH~~~V~sVaf~P~g~~iLaSgS---~DgtIrIWDl~t--g~~~~~i~-~~~~V~Slswspd-------G~lLat~s 186 (568)
T PTZ00420 120 ILKGHKKKISIIDWNPMNYYIMCSSG---FDSFVNIWDIEN--EKRAFQIN-MPKKLSSLKWNIK-------GNLLSGTC 186 (568)
T ss_pred EeecCCCcEEEEEECCCCCeEEEEEe---CCCeEEEEECCC--CcEEEEEe-cCCcEEEEEECCC-------CCEEEEEe
Confidence 56788888864 89988765 5665 899999999986 44455554 6678999999998 78999999
Q ss_pred CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE-----EEEeCCCC
Q 000054 2393 KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR-----ISTVPNTS 2467 (2548)
Q Consensus 2393 ~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts-----LafSPdG~ 2467 (2548)
.|+.|+|||+| +++.+..+ .+|.+.+.+ ..|++++.
T Consensus 187 ~D~~IrIwD~R---sg~~i~tl------------------------------------~gH~g~~~s~~v~~~~fs~d~~ 227 (568)
T PTZ00420 187 VGKHMHIIDPR---KQEIASSF------------------------------------HIHDGGKNTKNIWIDGLGGDDN 227 (568)
T ss_pred cCCEEEEEECC---CCcEEEEE------------------------------------ecccCCceeEEEEeeeEcCCCC
Confidence 99999999955 46665554 567665433 34568999
Q ss_pred EEEEEeCCC----cEEEEECCC-CcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEE
Q 000054 2468 LFLTGSKDG----DVKLWDAKA-AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2468 ~LaSGS~DG----tIrIWDl~T-gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWD 2540 (2548)
+++|+|.|+ .|+|||+++ ++++..+. +..+.+.+ .-....++| +++|+.|++|++|+
T Consensus 228 ~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~------------ld~~~~~L----~p~~D~~tg~l~lsGkGD~tIr~~e 291 (568)
T PTZ00420 228 YILSTGFSKNNMREMKLWDLKNTTSALVTMS------------IDNASAPL----IPHYDESTGLIYLIGKGDGNCRYYQ 291 (568)
T ss_pred EEEEEEcCCCCccEEEEEECCCCCCceEEEE------------ecCCccce----EEeeeCCCCCEEEEEECCCeEEEEE
Confidence 999988774 799999995 66665541 12222221 121224456 78999999999999
Q ss_pred CCCCc
Q 000054 2541 LEDYQ 2545 (2548)
Q Consensus 2541 L~sg~ 2545 (2548)
+..+.
T Consensus 292 ~~~~~ 296 (568)
T PTZ00420 292 HSLGS 296 (568)
T ss_pred ccCCc
Confidence 97664
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=218.51 Aligned_cols=235 Identities=18% Similarity=0.314 Sum_probs=199.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.++.|+++|.+|++|..+|.|.|||..+.+.+..+.. .|...|.+++|+ +..+.+|+.||.|..+|++
T Consensus 220 vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~---------~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR 288 (484)
T KOG0305|consen 220 VTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRG---------SHASRVGSLAWN--SSVLSSGSRDGKILNHDVR 288 (484)
T ss_pred eEEEEECCCCCEEEEeecCCeEEEEehhhccccccccC---------CcCceeEEEecc--CceEEEecCCCcEEEEEEe
Confidence 79999999999999999999999999988777766542 266899999998 7789999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
..+... .+..+|...|+. |++|++++|+|| .|+.+.|||... ..+...+..|...|..++|+|-.
T Consensus 289 ~~~~~~-------~~~~~H~qeVCgLkws~d~~~lASGg---nDN~~~Iwd~~~--~~p~~~~~~H~aAVKA~awcP~q- 355 (484)
T KOG0305|consen 289 ISQHVV-------STLQGHRQEVCGLKWSPDGNQLASGG---NDNVVFIWDGLS--PEPKFTFTEHTAAVKALAWCPWQ- 355 (484)
T ss_pred cchhhh-------hhhhcccceeeeeEECCCCCeeccCC---CccceEeccCCC--ccccEEEeccceeeeEeeeCCCc-
Confidence 775322 137889999984 999999999998 899999999965 67888999999999999999995
Q ss_pred CCCCCCCEEEEEe--CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCE
Q 000054 2380 GSGSVSPLIVTGG--KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSV 2457 (2548)
Q Consensus 2380 g~gs~g~lLVSGS--~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~V 2457 (2548)
..+||+|+ .|+.|++|| ..+|..+... .-.+.|
T Consensus 356 -----~~lLAsGGGs~D~~i~fwn---~~~g~~i~~v-------------------------------------dtgsQV 390 (484)
T KOG0305|consen 356 -----SGLLATGGGSADRCIKFWN---TNTGARIDSV-------------------------------------DTGSQV 390 (484)
T ss_pred -----cCceEEcCCCcccEEEEEE---cCCCcEeccc-------------------------------------ccCCce
Confidence 77999986 699999999 5567766554 234689
Q ss_pred EEEEEeCCCCEEEEEe--CCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECC
Q 000054 2458 TRISTVPNTSLFLTGS--KDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGD 2533 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS--~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~D 2533 (2548)
.+|.|++..+-|+++. .++.|.||+..+.+.+..+ .||..+| ..++++||| +++|++|
T Consensus 391 csL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l--------------~gH~~RV----l~la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 391 CSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL--------------LGHTSRV----LYLALSPDGETIVTGAAD 452 (484)
T ss_pred eeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee--------------cCCccee----EEEEECCCCCEEEEeccc
Confidence 9999999887666653 3779999999998777655 7888655 667999999 9999999
Q ss_pred CcEEEEECCC
Q 000054 2534 GSVKLIQLED 2543 (2548)
Q Consensus 2534 GtIrIWDL~s 2543 (2548)
.++++|++-+
T Consensus 453 ETlrfw~~f~ 462 (484)
T KOG0305|consen 453 ETLRFWNLFD 462 (484)
T ss_pred CcEEeccccC
Confidence 9999999865
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.7e-18 Score=194.41 Aligned_cols=232 Identities=22% Similarity=0.381 Sum_probs=183.8
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeE
Q 000054 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtV 2346 (2548)
+|.+.|++++|+|+++++++++.||.|++|++.+++.. .....|...+. .+.++++.+++++ .||.|
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~~i 75 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL--------RTLKGHTGPVRDVAASADGTYLASGS---SDKTI 75 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE--------EEEecCCcceeEEEECCCCCEEEEEc---CCCeE
Confidence 46699999999999999999999999999999876421 23556666663 4888998999986 79999
Q ss_pred EEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000054 2347 VVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2347 rIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
++||+.. .+.+..+..|...+.++.|+++ +.++++++.||.|++||++ +++....+. .......
T Consensus 76 ~i~~~~~--~~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~~~~i~~~~~~---~~~~~~~~~----~~~~~i~ 139 (289)
T cd00200 76 RLWDLET--GECVRTLTGHTSYVSSVAFSPD-------GRILSSSSRDKTIKVWDVE---TGKCLTTLR----GHTDWVN 139 (289)
T ss_pred EEEEcCc--ccceEEEeccCCcEEEEEEcCC-------CCEEEEecCCCeEEEEECC---CcEEEEEec----cCCCcEE
Confidence 9999975 4677788889999999999998 5688888889999999954 455555542 1122345
Q ss_pred ccccCCCCCC-ccCC-CCCceEEEcc--------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccc
Q 000054 2427 AHADAQTGSG-SKPG-DQNGMLWYIP--------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLH 2496 (2548)
Q Consensus 2427 ~vafSpdGk~-v~s~-D~sv~Iwdi~--------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~H 2496 (2548)
.+.+++++.+ ++.. ++.+++|++. ..|...|.+++|+|+++.+++++.||.|++||+++++.+..+
T Consensus 140 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~---- 215 (289)
T cd00200 140 SVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL---- 215 (289)
T ss_pred EEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecch----
Confidence 6788888777 3333 8889999853 367789999999999999999999999999999988887655
Q ss_pred cccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2497 ERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2497 s~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.+|.+ .+.+++|+|++ +++++.||.|++|++.++.
T Consensus 216 ----------~~~~~----~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~ 252 (289)
T cd00200 216 ----------RGHEN----GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE 252 (289)
T ss_pred ----------hhcCC----ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce
Confidence 34543 45677999988 5566669999999998643
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-17 Score=216.25 Aligned_cols=207 Identities=16% Similarity=0.207 Sum_probs=157.5
Q ss_pred EEEEEEcC-CCCEEEEEECCCeEEEEEcCCCcee----EEEeccCCCCCCCCCCCCCeEEEEEccCC-CEEEEEeCCCcE
Q 000054 2222 TRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKAT----ATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTV 2295 (2548)
Q Consensus 2222 V~~VsfSP-dG~~LASGS~DGsVrLWDl~tg~~l----~t~~~l~ghs~~~~~H~~~VtsVaFSPdG-~~LaSGS~DGtV 2295 (2548)
|.+++|+| ++.+|++|+.||+|++||+.++... ..+..+ .+|...|.+++|+|++ +.|++|+.||+|
T Consensus 78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L-------~gH~~~V~~l~f~P~~~~iLaSgs~DgtV 150 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-------QGHTKKVGIVSFHPSAMNVLASAGADMVV 150 (493)
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEe-------cCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence 79999999 8899999999999999999865321 111112 2366899999999975 799999999999
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe-EEE
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA-RSI 2372 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V-tSL 2372 (2548)
++||+++++.. ..+.+|...|.+ |+|+|++|++++ .|+.|++||+++ ++.+..+.+|.+.+ ..+
T Consensus 151 rIWDl~tg~~~--------~~l~~h~~~V~sla~spdG~lLatgs---~Dg~IrIwD~rs--g~~v~tl~~H~~~~~~~~ 217 (493)
T PTZ00421 151 NVWDVERGKAV--------EVIKCHSDQITSLEWNLDGSLLCTTS---KDKKLNIIDPRD--GTIVSSVEAHASAKSQRC 217 (493)
T ss_pred EEEECCCCeEE--------EEEcCCCCceEEEEEECCCCEEEEec---CCCEEEEEECCC--CcEEEEEecCCCCcceEE
Confidence 99999977532 236678887864 899999999986 899999999987 56778888898653 467
Q ss_pred EEccCCCCCCCCCCEEEEEe----CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEE
Q 000054 2373 SVFDNDLGSGSVSPLIVTGG----KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWY 2448 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS----~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwd 2448 (2548)
.|.++ +..+++++ .|+.|++||+|... +.+... +
T Consensus 218 ~w~~~-------~~~ivt~G~s~s~Dr~VklWDlr~~~--~p~~~~---------------------------------~ 255 (493)
T PTZ00421 218 LWAKR-------KDLIITLGCSKSQQRQIMLWDTRKMA--SPYSTV---------------------------------D 255 (493)
T ss_pred EEcCC-------CCeEEEEecCCCCCCeEEEEeCCCCC--CceeEe---------------------------------c
Confidence 77777 34565544 48999999976421 121111 0
Q ss_pred cccCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCcEEEEe
Q 000054 2449 IPKAHLGSVTRISTVPNTSLFLTGS-KDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2449 i~~gH~~~VtsLafSPdG~~LaSGS-~DGtIrIWDl~Tgell~tL 2492 (2548)
..+...+....|++++.+|++|+ .||.|++||+.+++++...
T Consensus 256 --~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 256 --LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred --cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 11234566678999999999988 4999999999999887654
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7e-19 Score=222.34 Aligned_cols=231 Identities=17% Similarity=0.255 Sum_probs=195.8
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEE
Q 000054 2271 LASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVV 2348 (2548)
Q Consensus 2271 ~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrI 2348 (2548)
...|..++|+|....++++-..|.|++||.+.+..+. .|..|.++|. .|+|++.++++|| +|..|++
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~--------rFdeHdGpVRgv~FH~~qplFVSGG---DDykIkV 77 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID--------RFDEHDGPVRGVDFHPTQPLFVSGG---DDYKIKV 77 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHh--------hhhccCCccceeeecCCCCeEEecC---CccEEEE
Confidence 3789999999999999999999999999998775432 3889999997 4999999999998 9999999
Q ss_pred EECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccc
Q 000054 2349 WDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAH 2428 (2548)
Q Consensus 2349 WDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~v 2428 (2548)
|+... .+++.++.||-+.|+.+.|++. -++++|+|.|.+|+||+ -++++++..+.. +. ....+.
T Consensus 78 WnYk~--rrclftL~GHlDYVRt~~FHhe-------yPWIlSASDDQTIrIWN---wqsr~~iavltG---Hn-HYVMcA 141 (1202)
T KOG0292|consen 78 WNYKT--RRCLFTLLGHLDYVRTVFFHHE-------YPWILSASDDQTIRIWN---WQSRKCIAVLTG---HN-HYVMCA 141 (1202)
T ss_pred Eeccc--ceehhhhccccceeEEeeccCC-------CceEEEccCCCeEEEEe---ccCCceEEEEec---Cc-eEEEee
Confidence 99986 7899999999999999999998 78999999999999999 778899888732 22 234567
Q ss_pred ccCCCCCC--ccCCCCCceEEEc-------------------------------------ccCCCCCEEEEEEeCCCCEE
Q 000054 2429 ADAQTGSG--SKPGDQNGMLWYI-------------------------------------PKAHLGSVTRISTVPNTSLF 2469 (2548)
Q Consensus 2429 afSpdGk~--v~s~D~sv~Iwdi-------------------------------------~~gH~~~VtsLafSPdG~~L 2469 (2548)
.|.|.... +++-|.++++||+ ..||+..|+-++|+|.-.++
T Consensus 142 qFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpli 221 (1202)
T KOG0292|consen 142 QFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLI 221 (1202)
T ss_pred ccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceE
Confidence 78886555 7788999999983 34899999999999999999
Q ss_pred EEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000054 2470 LTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2470 aSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
++|++|..|++|.+..-+.- + ..+.+||.+.|. ++-|+|.. ++|.|.|++|||||+...
T Consensus 222 VSG~DDRqVKlWrmnetKaW-E-----------vDtcrgH~nnVs----svlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 222 VSGADDRQVKLWRMNETKAW-E-----------VDTCRGHYNNVS----SVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred EecCCcceeeEEEeccccce-e-----------ehhhhcccCCcc----eEEecCccceeEecCCCccEEEEecccc
Confidence 99999999999998744322 1 224699998774 45799977 889999999999999753
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-18 Score=207.90 Aligned_cols=259 Identities=19% Similarity=0.253 Sum_probs=202.5
Q ss_pred EEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEE-ec---cCCC--CCCC--CCCCCCeEEEEEccCCCEEEEEeCC
Q 000054 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATY-GV---LPAA--NVPP--PYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~-~~---l~gh--s~~~--~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
.+++++++|++.+.++++.||+|.=|++.+|....-+ .. ...| .... ..|...|.+++.++||++|++|+.|
T Consensus 144 s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d 223 (479)
T KOG0299|consen 144 SVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRD 223 (479)
T ss_pred cceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecCCC
Confidence 3789999999999999999999999999988754211 11 1101 1112 3788999999999999999999999
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeE
Q 000054 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGAR 2370 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~Vt 2370 (2548)
..|.||+.++.+.+ +++.+|.+.|.+ |....+.+++++ .|+.|++|++.. ...+.++.+|.+.|.
T Consensus 224 ~~v~Iw~~~t~ehv--------~~~~ghr~~V~~L~fr~gt~~lys~s---~Drsvkvw~~~~--~s~vetlyGHqd~v~ 290 (479)
T KOG0299|consen 224 RHVQIWDCDTLEHV--------KVFKGHRGAVSSLAFRKGTSELYSAS---ADRSVKVWSIDQ--LSYVETLYGHQDGVL 290 (479)
T ss_pred ceEEEecCcccchh--------hcccccccceeeeeeecCccceeeee---cCCceEEEehhH--hHHHHHHhCCcccee
Confidence 99999999988643 348899999974 555555666664 899999999975 567888999999999
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcc
Q 000054 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP 2450 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~ 2450 (2548)
+|..... ...+.+|+.|+++++|++.. ..... +
T Consensus 291 ~IdaL~r-------eR~vtVGgrDrT~rlwKi~e----esqli------------------------------------f 323 (479)
T KOG0299|consen 291 GIDALSR-------ERCVTVGGRDRTVRLWKIPE----ESQLI------------------------------------F 323 (479)
T ss_pred eechhcc-------cceEEeccccceeEEEeccc----cceee------------------------------------e
Confidence 9987766 56777788999999999621 11111 2
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EE
Q 000054 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FL 2528 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--La 2528 (2548)
.+|.+.+-|++|- +...|+|||.||.|.+|++.+.+++++.+.+|.-.+. +..-+.. ..|++++..|.. ++
T Consensus 324 rg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~----~~~~~~~--~Witsla~i~~sdL~a 396 (479)
T KOG0299|consen 324 RGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPE----LDPVNGN--FWITSLAVIPGSDLLA 396 (479)
T ss_pred eCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCC----ccccccc--cceeeeEecccCceEE
Confidence 6788999999997 4567899999999999999999999999777654432 1111110 256788998887 88
Q ss_pred EEECCCcEEEEECCCCcc
Q 000054 2529 SCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2529 SGS~DGtIrIWDL~sg~l 2546 (2548)
+|+.+|.||+|.+.+|..
T Consensus 397 sGS~~G~vrLW~i~~g~r 414 (479)
T KOG0299|consen 397 SGSWSGCVRLWKIEDGLR 414 (479)
T ss_pred ecCCCCceEEEEecCCcc
Confidence 999999999999999854
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-18 Score=195.24 Aligned_cols=239 Identities=15% Similarity=0.169 Sum_probs=187.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWDl 2300 (2548)
+..++|+-+|..|++|+.|+++.+|+++.++..... ...+|.+.|-.++|+| ..+.|++++.|++|++||+
T Consensus 23 v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~--------~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 23 VHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKEL--------VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI 94 (313)
T ss_pred ceEEEEcccCceeeecccCCceEEEEecchhhhhhh--------cccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence 688999999999999999999999999987544443 2345678999999998 6789999999999999999
Q ss_pred CCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCC---------------------------
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLA--------------------------- 2353 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t--------------------------- 2353 (2548)
+.+++.... -....+-...|+|+|.++++++ .|..|.+.|.+.
T Consensus 95 r~~k~~~~i-------~~~~eni~i~wsp~g~~~~~~~---kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Ffl 164 (313)
T KOG1407|consen 95 RSGKCTARI-------ETKGENINITWSPDGEYIAVGN---KDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFL 164 (313)
T ss_pred ccCcEEEEe-------eccCcceEEEEcCCCCEEEEec---CcccEEEEEecccceeehhcccceeeeeeecCCCCEEEE
Confidence 988754321 1222233345778888888775 666666666542
Q ss_pred ------------CCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCC
Q 000054 2354 ------------PPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGS 2421 (2548)
Q Consensus 2354 ------------~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s 2421 (2548)
+..+++..+++|.....||.|.|+ |+++++|+.|..+.+||+ ..--|.+.+
T Consensus 165 t~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~-------GryfA~GsADAlvSLWD~---~ELiC~R~i------- 227 (313)
T KOG1407|consen 165 TNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPD-------GRYFATGSADALVSLWDV---DELICERCI------- 227 (313)
T ss_pred ecCCceEEEEeccccccccccccCCcceEEEEECCC-------CceEeeccccceeeccCh---hHhhhheee-------
Confidence 123566778899999999999999 899999999999999994 444555555
Q ss_pred CccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccccccccc
Q 000054 2422 SINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTF 2501 (2548)
Q Consensus 2422 ~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsf 2501 (2548)
..++-+|+.+.|+.+|++||+||+|..|-|=++++|..+..++
T Consensus 228 -----------------------------sRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-------- 270 (313)
T KOG1407|consen 228 -----------------------------SRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-------- 270 (313)
T ss_pred -----------------------------ccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee--------
Confidence 6688999999999999999999999999999999999998883
Q ss_pred ccCcccCCCCceeecEEEEEEcCCe--EEEEECC---------CcEEEEECCC
Q 000054 2502 LQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGD---------GSVKLIQLED 2543 (2548)
Q Consensus 2502 l~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~D---------GtIrIWDL~s 2543 (2548)
+. +....++|+|.. ||-+++| |+||+|-+++
T Consensus 271 -------~~----~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~~ 312 (313)
T KOG1407|consen 271 -------CE----GPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLSN 312 (313)
T ss_pred -------cc----CCceeEEecCCCceeeEEecCCCCccccccceeEEecCCC
Confidence 11 223566999999 5544433 6889887765
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=223.97 Aligned_cols=239 Identities=17% Similarity=0.242 Sum_probs=181.0
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCC----------------------------cc--c------------
Q 000054 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVG----------------------------GR--S------------ 2306 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tg----------------------------k~--i------------ 2306 (2548)
.|.+.|+++.|++||++||+||.||.|+||.+... .. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 57799999999999999999999999999987550 00 0
Q ss_pred ---cc-------ccCccceeccCCcccEEEEcCC-CCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEc
Q 000054 2307 ---NV-------RPMESCLCFSSHAMDVSYITSS-GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2307 ---~i-------~p~~s~~t~~gH~~~V~afSpd-GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafs 2375 (2548)
.. ....+...+.||.++|..+++. .++|+++ |.|++|++|++.. ..|+..| .|.+.|+||+|+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSS---SMDKTVRLWh~~~--~~CL~~F-~HndfVTcVaFn 418 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSS---SMDKTVRLWHPGR--KECLKVF-SHNDFVTCVAFN 418 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEec---cccccEEeecCCC--cceeeEE-ecCCeeEEEEec
Confidence 00 0002234477999999864443 4566666 4999999999975 6788887 599999999999
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEccc--
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIPK-- 2451 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~~-- 2451 (2548)
|.| .+++++|+-||.||||++. ..+.+.- ......++.+.+.|||++ +|+.+|.+++|++..
T Consensus 419 PvD------DryFiSGSLD~KvRiWsI~---d~~Vv~W-----~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 419 PVD------DRYFISGSLDGKVRLWSIS---DKKVVDW-----NDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK 484 (712)
T ss_pred ccC------CCcEeecccccceEEeecC---cCeeEee-----hhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCe
Confidence 997 8999999999999999963 2333221 122245678899999998 888899999997421
Q ss_pred ---------------CCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceee
Q 000054 2452 ---------------AHLGSVTRISTVPNT-SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRA 2515 (2548)
Q Consensus 2452 ---------------gH~~~VtsLafSPdG-~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a 2515 (2548)
.|. .|+++.|.|.. .-+++.+.|..|+|+|.++.+++..|++.+.. +..+
T Consensus 485 ~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~-----------~SQ~-- 550 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT-----------SSQI-- 550 (712)
T ss_pred EEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccC-----------Ccce--
Confidence 133 79999999854 34666679999999999999999877543322 2223
Q ss_pred cEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000054 2516 GVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2516 ~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
...|+.|| |++++.|..|++|+++..
T Consensus 551 ---~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 551 ---SASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred ---eeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 22688899 999999999999998543
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.2e-17 Score=191.39 Aligned_cols=272 Identities=13% Similarity=0.152 Sum_probs=209.8
Q ss_pred EEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC--CCcEEEE
Q 000054 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL--DGTVCTW 2298 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~--DGtVrVW 2298 (2548)
.+.++.|+++|.++++++.|.+++|||..+++++.++.. +.-.|..++|....+.++.++. |.+|+.-
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s----------kkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS----------KKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec----------ccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 379999999999999999999999999999999988743 1246888999887777777776 8899999
Q ss_pred EcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEcc
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
++.+.+.+ ..+.||...|.. .+|-+..+++++ .|++|++||++. .++...+. ..+-...+|.|
T Consensus 86 sl~dNkyl--------RYF~GH~~~V~sL~~sP~~d~FlS~S---~D~tvrLWDlR~--~~cqg~l~--~~~~pi~AfDp 150 (311)
T KOG1446|consen 86 SLHDNKYL--------RYFPGHKKRVNSLSVSPKDDTFLSSS---LDKTVRLWDLRV--KKCQGLLN--LSGRPIAAFDP 150 (311)
T ss_pred EeecCceE--------EEcCCCCceEEEEEecCCCCeEEecc---cCCeEEeeEecC--CCCceEEe--cCCCcceeECC
Confidence 99887644 348999999985 789889999985 999999999996 45555543 33445678889
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEcccC--
Q 000054 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIPKA-- 2452 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~~g-- 2452 (2548)
. |-++|++...+.|++||+|....|-- .++ ............+-|++||++ +.+..+.+++.|-+.|
T Consensus 151 ~-------GLifA~~~~~~~IkLyD~Rs~dkgPF-~tf-~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~ 221 (311)
T KOG1446|consen 151 E-------GLIFALANGSELIKLYDLRSFDKGPF-TTF-SITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV 221 (311)
T ss_pred C-------CcEEEEecCCCeEEEEEecccCCCCc-eeE-ccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE
Confidence 8 67888888877999999997655433 333 122245566778999999998 5666666777775433
Q ss_pred ------CCCC---EEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccC-CCCceeecEEEEEE
Q 000054 2453 ------HLGS---VTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRG-FGGVVRAGVTDIQV 2522 (2548)
Q Consensus 2453 ------H~~~---VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~G-H~~~V~a~VtsLaf 2522 (2548)
+... -....|.|+++++++|+.||+|.+|++++|..+..+. | +.+ .+.++.|
T Consensus 222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~--------------~~~~~----~~~~~~f 283 (311)
T KOG1446|consen 222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLR--------------GPNGG----PVSCVRF 283 (311)
T ss_pred eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEec--------------CCCCC----Ccccccc
Confidence 3221 1467799999999999999999999999999998773 3 332 3456689
Q ss_pred cCCeEEEEECCCcEEEEECCCC
Q 000054 2523 VSRGFLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2523 SPdGLaSGS~DGtIrIWDL~sg 2544 (2548)
+|.-..-++++..+.+|-.+..
T Consensus 284 nP~~~mf~sa~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 284 NPRYAMFVSASSNLVFWLPDED 305 (311)
T ss_pred CCceeeeeecCceEEEEecccc
Confidence 9998555566778999976643
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-18 Score=205.66 Aligned_cols=263 Identities=15% Similarity=0.134 Sum_probs=192.9
Q ss_pred CCccCCeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCC--CCCCCCCCCCeEEEEEccC-CCEEEEEe
Q 000054 2214 PATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAA--NVPPPYALASISALQFDHY-GHRFASAA 2290 (2548)
Q Consensus 2214 ~~tl~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~gh--s~~~~~H~~~VtsVaFSPd-G~~LaSGS 2290 (2548)
...-++|.+..++|++.|..+++.+.....+|+|.+..+.....++-+-. -....+|...+++.+|+|. ...|+|++
T Consensus 209 l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s 288 (641)
T KOG0772|consen 209 LQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS 288 (641)
T ss_pred cCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEec
Confidence 34456788999999999999999999999999998766665555432100 0146789999999999995 56799999
Q ss_pred CCCcEEEEEcCCCcccccccCccceecc--CCc--ccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcc-eeeecc
Q 000054 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFS--SHA--MDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR-ASITCH 2365 (2548)
Q Consensus 2291 ~DGtVrVWDl~tgk~i~i~p~~s~~t~~--gH~--~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v-~sl~gH 2365 (2548)
.||++++||++..+... . ..+... +.. ...++|+++|++||+|+ .||.|.+||.......+. ..-.+|
T Consensus 289 ~DgtlRiWdv~~~k~q~-q---Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc---~DGSIQ~W~~~~~~v~p~~~vk~AH 361 (641)
T KOG0772|consen 289 YDGTLRIWDVNNTKSQL-Q---VIKTKPAGGKRVPVTSCAWNRDGKLIAAGC---LDGSIQIWDKGSRTVRPVMKVKDAH 361 (641)
T ss_pred CCCcEEEEecCCchhhe-e---EEeeccCCCcccCceeeecCCCcchhhhcc---cCCceeeeecCCcccccceEeeecc
Confidence 99999999998654211 0 011111 111 12345999999999987 899999999864323333 344478
Q ss_pred CC--CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCC
Q 000054 2366 EG--GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQN 2443 (2548)
Q Consensus 2366 s~--~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~s 2443 (2548)
.. .|+||.|+++ |++|++-|.|+++++||+|+.. +++.....
T Consensus 362 ~~g~~Itsi~FS~d-------g~~LlSRg~D~tLKvWDLrq~k--kpL~~~tg--------------------------- 405 (641)
T KOG0772|consen 362 LPGQDITSISFSYD-------GNYLLSRGFDDTLKVWDLRQFK--KPLNVRTG--------------------------- 405 (641)
T ss_pred CCCCceeEEEeccc-------cchhhhccCCCceeeeeccccc--cchhhhcC---------------------------
Confidence 87 9999999999 8999999999999999998632 33322200
Q ss_pred ceEEEcccCCCCCEEEEEEeCCCCEEEEEeC------CCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecE
Q 000054 2444 GMLWYIPKAHLGSVTRISTVPNTSLFLTGSK------DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGV 2517 (2548)
Q Consensus 2444 v~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~------DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~V 2517 (2548)
-...-+-+.++|+|+.++++||.. .|++.+||..+-+.++++. +. .+.|
T Consensus 406 -------L~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~------------i~------~aSv 460 (641)
T KOG0772|consen 406 -------LPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID------------IS------TASV 460 (641)
T ss_pred -------CCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec------------CC------CceE
Confidence 001123457889999999999865 6789999999999998872 11 2457
Q ss_pred EEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000054 2518 TDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2518 tsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
..+.|+|.- |..|++||++++|==++.
T Consensus 461 v~~~WhpkLNQi~~gsgdG~~~vyYdp~~ 489 (641)
T KOG0772|consen 461 VRCLWHPKLNQIFAGSGDGTAHVYYDPNE 489 (641)
T ss_pred EEEeecchhhheeeecCCCceEEEECccc
Confidence 788999976 889999999999865443
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=201.29 Aligned_cols=268 Identities=16% Similarity=0.210 Sum_probs=203.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCC---ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKD---KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg---~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVW 2298 (2548)
|+++..+...+++.||+. |.|+|||+... ..+..+.++. ...-|+++...|||+.|++|+.-.++.||
T Consensus 422 VcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~--------rdnyiRSckL~pdgrtLivGGeastlsiW 492 (705)
T KOG0639|consen 422 VCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLN--------RDNYIRSCKLLPDGRTLIVGGEASTLSIW 492 (705)
T ss_pred EEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccC--------cccceeeeEecCCCceEEeccccceeeee
Confidence 788888888889998876 67999999743 2333333322 23679999999999999999999999999
Q ss_pred EcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCC
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
|+...... + ....+-.+......+++||.++.+++. .||+|.|||+.. ...++.|+||++++.||.++++
T Consensus 493 DLAapTpr-i---kaeltssapaCyALa~spDakvcFscc---sdGnI~vwDLhn--q~~VrqfqGhtDGascIdis~d- 562 (705)
T KOG0639|consen 493 DLAAPTPR-I---KAELTSSAPACYALAISPDAKVCFSCC---SDGNIAVWDLHN--QTLVRQFQGHTDGASCIDISKD- 562 (705)
T ss_pred eccCCCcc-h---hhhcCCcchhhhhhhcCCccceeeeec---cCCcEEEEEccc--ceeeecccCCCCCceeEEecCC-
Confidence 99865311 1 111112222223335899999988886 799999999986 6789999999999999999998
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc-------
Q 000054 2379 LGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI------- 2449 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi------- 2449 (2548)
|..|.|||-|.+||-||+| +++.++.. .-...+..+..+|++.+ ++-.++.+.+..+
T Consensus 563 ------GtklWTGGlDntvRcWDlr---egrqlqqh-----dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyq 628 (705)
T KOG0639|consen 563 ------GTKLWTGGLDNTVRCWDLR---EGRQLQQH-----DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQ 628 (705)
T ss_pred ------CceeecCCCccceeehhhh---hhhhhhhh-----hhhhhheecccCCCccceeeecccCcEEEEecCCcccee
Confidence 7899999999999999976 34443321 11122345677899998 4555555655553
Q ss_pred ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--E
Q 000054 2450 PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--F 2527 (2548)
Q Consensus 2450 ~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--L 2527 (2548)
+.-|++-|.++.|.+.|+++++.+.|..+..|...-|..+...+ . .+.|.++.+|-|. |
T Consensus 629 lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk----------------E---~SsVlsCDIS~ddkyI 689 (705)
T KOG0639|consen 629 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK----------------E---SSSVLSCDISFDDKYI 689 (705)
T ss_pred ecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc----------------c---cCcceeeeeccCceEE
Confidence 34589999999999999999999999999999999888876542 1 1457788888887 8
Q ss_pred EEEECCCcEEEEEC
Q 000054 2528 LSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2528 aSGS~DGtIrIWDL 2541 (2548)
+|||+|....+|.+
T Consensus 690 VTGSGdkkATVYeV 703 (705)
T KOG0639|consen 690 VTGSGDKKATVYEV 703 (705)
T ss_pred EecCCCcceEEEEE
Confidence 99999999999876
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-17 Score=207.68 Aligned_cols=267 Identities=16% Similarity=0.229 Sum_probs=203.0
Q ss_pred ccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEE-EEEcc-CCCEEEEEeC
Q 000054 2216 TVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISA-LQFDH-YGHRFASAAL 2291 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~Vts-VaFSP-dG~~LaSGS~ 2291 (2548)
.+++|. +++++.. ++..++++|.||++++|+-..++.+.+. ...+|.+-|.. +++.+ ++-++++|+.
T Consensus 9 ~l~gH~~DVr~v~~~-~~~~i~s~sRd~t~~vw~~~~~~~l~~~--------~~~~~~g~i~~~i~y~e~~~~~l~~g~~ 79 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVT-DGVCIISGSRDGTVKVWAKKGKQYLETH--------AFEGPKGFIANSICYAESDKGRLVVGGM 79 (745)
T ss_pred EeccCccchheeEec-CCeEEeecCCCCceeeeeccCcccccce--------ecccCcceeeccceeccccCcceEeecc
Confidence 445554 4555433 4558999999999999997655544322 11224466665 78775 5556999999
Q ss_pred CCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCC-EEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeE
Q 000054 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGAR 2370 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGs-lLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~Vt 2370 (2548)
|++|.+|...+.. +..++.+|...|++++.... .+++| |.|.++++|-. +++...+.+|+..|+
T Consensus 80 D~~i~v~~~~~~~--------P~~~LkgH~snVC~ls~~~~~~~iSg---SWD~TakvW~~----~~l~~~l~gH~asVW 144 (745)
T KOG0301|consen 80 DTTIIVFKLSQAE--------PLYTLKGHKSNVCSLSIGEDGTLISG---SWDSTAKVWRI----GELVYSLQGHTASVW 144 (745)
T ss_pred cceEEEEecCCCC--------chhhhhccccceeeeecCCcCceEec---ccccceEEecc----hhhhcccCCcchhee
Confidence 9999999987654 34568999999998764322 36676 59999999987 457778999999999
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCC-CCCccCCCCCceEEEc
Q 000054 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQT-GSGSKPGDQNGMLWYI 2449 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpd-Gk~v~s~D~sv~Iwdi 2449 (2548)
++...|.+ .++||+.|++|++|.- ++.++++ .++..++ +.+++-++ +...++.|+.++.|++
T Consensus 145 Av~~l~e~--------~~vTgsaDKtIklWk~-----~~~l~tf---~gHtD~V-RgL~vl~~~~flScsNDg~Ir~w~~ 207 (745)
T KOG0301|consen 145 AVASLPEN--------TYVTGSADKTIKLWKG-----GTLLKTF---SGHTDCV-RGLAVLDDSHFLSCSNDGSIRLWDL 207 (745)
T ss_pred eeeecCCC--------cEEeccCcceeeeccC-----Cchhhhh---ccchhhe-eeeEEecCCCeEeecCCceEEEEec
Confidence 99999984 9999999999999982 5666665 2233333 34455555 5558899999999996
Q ss_pred -------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEE
Q 000054 2450 -------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQV 2522 (2548)
Q Consensus 2450 -------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLaf 2522 (2548)
..+|++-|++++..+++..++|+|+|++++||+.. ++.+.+. |. + ..|+++.+
T Consensus 208 ~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~--lP----------t------tsiWsa~~ 267 (745)
T KOG0301|consen 208 DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT--LP----------T------TSIWSAKV 267 (745)
T ss_pred cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe--cC----------c------cceEEEEE
Confidence 45899999999988999999999999999999976 7777662 11 1 23677788
Q ss_pred cCCe-EEEEECCCcEEEEECCC
Q 000054 2523 VSRG-FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2523 SPdG-LaSGS~DGtIrIWDL~s 2543 (2548)
-++| |++|+.||.||||..+.
T Consensus 268 L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 268 LLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred eeCCCEEEeccCceEEEEEecc
Confidence 8899 99999999999998764
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.6e-18 Score=201.46 Aligned_cols=236 Identities=19% Similarity=0.249 Sum_probs=184.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.++.|.+++..+++++.|+.+++|+++..+...++.+ |.+.|+++.|......+++|+.|.+|+.||+.
T Consensus 222 it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsG----------HtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~ 291 (459)
T KOG0288|consen 222 ITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSG----------HTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQ 291 (459)
T ss_pred cceeeecCCCceEEeecCCCceeeeeccchhhhhhhcc----------cccceeeehhhccccceeeccccchhhhhhhh
Confidence 48889999999999999999999999999988888743 67999999999887779999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
...+.+.. . ......+|.+ .+..++++- .|++|++||.+. ..++..+..+. .|+++..+++
T Consensus 292 k~~C~kt~-l-----~~S~cnDI~~---~~~~~~SgH---~DkkvRfwD~Rs--~~~~~sv~~gg-~vtSl~ls~~---- 352 (459)
T KOG0288|consen 292 KAYCSKTV-L-----PGSQCNDIVC---SISDVISGH---FDKKVRFWDIRS--ADKTRSVPLGG-RVTSLDLSMD---- 352 (459)
T ss_pred hhheeccc-c-----ccccccceEe---cceeeeecc---cccceEEEeccC--CceeeEeecCc-ceeeEeeccC----
Confidence 76554321 0 1122334442 245566653 899999999987 56777776655 9999999988
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEE
Q 000054 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRIS 2461 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLa 2461 (2548)
+..+.+++.|.++.+.|+|. ......+ +..|. ..+|+ .+.+.
T Consensus 353 ---g~~lLsssRDdtl~viDlRt---~eI~~~~----------------sA~g~--------------k~asD--wtrvv 394 (459)
T KOG0288|consen 353 ---GLELLSSSRDDTLKVIDLRT---KEIRQTF----------------SAEGF--------------KCASD--WTRVV 394 (459)
T ss_pred ---CeEEeeecCCCceeeeeccc---ccEEEEe----------------ecccc--------------ccccc--cceeE
Confidence 67888889999999999764 2332232 11110 12333 78999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEE
Q 000054 2462 TVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLI 2539 (2548)
Q Consensus 2462 fSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIW 2539 (2548)
|+|++.|+++||.||.|+||++.++++...+. ..+.+ +.|++++|+|.| +++++.++.+.+|
T Consensus 395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~-------------~s~s~---~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKVLS-------------LSTSN---AAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ECCCCceeeeccCCCcEEEEEccCceEEEEec-------------cCCCC---cceEEEEEcCCCchhhcccCCcceEec
Confidence 99999999999999999999999999998773 12222 368899999999 9999999999999
Q ss_pred E
Q 000054 2540 Q 2540 (2548)
Q Consensus 2540 D 2540 (2548)
.
T Consensus 459 ~ 459 (459)
T KOG0288|consen 459 T 459 (459)
T ss_pred C
Confidence 4
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.9e-18 Score=211.06 Aligned_cols=236 Identities=19% Similarity=0.290 Sum_probs=189.0
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCcee--EEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccc
Q 000054 2229 PLRPFFLVGSSNTHIYLWEFGKDKAT--ATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRS 2306 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~~l--~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i 2306 (2548)
|.++||+|||.||.|++|+....... ..+. .+...|.+.|.++....+++.|++++.|-+|++|+...+.
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~------asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-- 106 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYI------ASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-- 106 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchh------hhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc--
Confidence 57789999999999999998754321 1111 0233477999999999999999999999999999998663
Q ss_pred ccccCccceeccCCcccEEEE---cCCCCEEEEEeccCCCCeEEEEECCCCCCCc--------ceeee-ccCCCeEEEEE
Q 000054 2307 NVRPMESCLCFSSHAMDVSYI---TSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--------RASIT-CHEGGARSISV 2374 (2548)
Q Consensus 2307 ~i~p~~s~~t~~gH~~~V~af---SpdGslLATgG~SS~DGtVrIWDl~t~~~k~--------v~sl~-gHs~~VtSLaf 2374 (2548)
.....++..|.+.|.|+ -++..++|+|| -|+.|.+||+.+...+. ...+. |+..+|.+++.
T Consensus 107 ----~~c~stir~H~DYVkcla~~ak~~~lvaSgG---LD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~ 179 (735)
T KOG0308|consen 107 ----TFCMSTIRTHKDYVKCLAYIAKNNELVASGG---LDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAM 179 (735)
T ss_pred ----chhHhhhhcccchheeeeecccCceeEEecC---CCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeec
Confidence 11344578899988874 44777889988 89999999998642222 22333 78899999998
Q ss_pred ccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000054 2375 FDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
++. +..+++||..+.+++||- .+++.+..+ .||.
T Consensus 180 N~t-------~t~ivsGgtek~lr~wDp---rt~~kimkL------------------------------------rGHT 213 (735)
T KOG0308|consen 180 NQT-------GTIIVSGGTEKDLRLWDP---RTCKKIMKL------------------------------------RGHT 213 (735)
T ss_pred CCc-------ceEEEecCcccceEEecc---ccccceeee------------------------------------eccc
Confidence 887 789999999999999994 455555454 7999
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEEC
Q 000054 2455 GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGG 2532 (2548)
Q Consensus 2455 ~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~ 2532 (2548)
.-|.++..++||+.+++||.||+|++||+...+++.++ .-|... |+.+..+|+- +.+|+.
T Consensus 214 dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~--------------~vH~e~----VWaL~~~~sf~~vYsG~r 275 (735)
T KOG0308|consen 214 DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATY--------------IVHKEG----VWALQSSPSFTHVYSGGR 275 (735)
T ss_pred cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeE--------------EeccCc----eEEEeeCCCcceEEecCC
Confidence 99999999999999999999999999999999999887 556654 4556777776 899999
Q ss_pred CCcEEEEECCC
Q 000054 2533 DGSVKLIQLED 2543 (2548)
Q Consensus 2533 DGtIrIWDL~s 2543 (2548)
||.|..=|+.+
T Consensus 276 d~~i~~Tdl~n 286 (735)
T KOG0308|consen 276 DGNIYRTDLRN 286 (735)
T ss_pred CCcEEecccCC
Confidence 99999888876
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-17 Score=205.81 Aligned_cols=280 Identities=19% Similarity=0.261 Sum_probs=211.1
Q ss_pred EEEEEEcCCCC---EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 000054 2222 TRAFSSHPLRP---FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG~---~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVW 2298 (2548)
+..+++-|++. .|+. -.++++.+|.++...... ......+++...+|...|.+++++.+...+++|+ .+.+++|
T Consensus 323 iks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~-p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiW 399 (888)
T KOG0306|consen 323 IKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTS-PEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIW 399 (888)
T ss_pred eeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCC-ccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEE
Confidence 66777766543 3333 677888888877511110 1112223345678899999999998887777765 5799999
Q ss_pred EcCCCcccccccCccceeccCCcccEE-EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVS-YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~-afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
+..+.+++... ... ..++ +|-|.++++++|+ ..|.+.++|+.. ...+..+++|.+.+++++..|+
T Consensus 400 n~~t~kciRTi--------~~~-y~l~~~Fvpgd~~Iv~G~---k~Gel~vfdlaS--~~l~Eti~AHdgaIWsi~~~pD 465 (888)
T KOG0306|consen 400 NRDTLKCIRTI--------TCG-YILASKFVPGDRYIVLGT---KNGELQVFDLAS--ASLVETIRAHDGAIWSISLSPD 465 (888)
T ss_pred EccCcceeEEe--------ccc-cEEEEEecCCCceEEEec---cCCceEEEEeeh--hhhhhhhhccccceeeeeecCC
Confidence 99988876432 222 2222 4889999999987 899999999976 5678888899999999999999
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCcccc--Cceee--ee-cCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc-
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIAT--GKTKK--HK-HSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI- 2449 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~T--Gk~l~--tl-~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi- 2449 (2548)
+..+++||.|.+|++||+..... |...+ .+ +.....-.....++.+||||++ ++--|+++++|.+
T Consensus 466 -------~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflD 538 (888)
T KOG0306|consen 466 -------NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLD 538 (888)
T ss_pred -------CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEec
Confidence 78999999999999999864322 21111 11 1111122334567889999999 7778999988863
Q ss_pred -------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEE
Q 000054 2450 -------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQV 2522 (2548)
Q Consensus 2450 -------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLaf 2522 (2548)
+-||.-+|.|+..+||+++++|||.|.+|+||-+.-|.+-+.+ .+|.+ .|+++.|
T Consensus 539 tlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~--------------fAHdD----Svm~V~F 600 (888)
T KOG0306|consen 539 TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF--------------FAHDD----SVMSVQF 600 (888)
T ss_pred ceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh--------------hcccC----ceeEEEE
Confidence 3599999999999999999999999999999999999987655 67875 4577799
Q ss_pred cCCe--EEEEECCCcEEEEECCC
Q 000054 2523 VSRG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2523 SPdG--LaSGS~DGtIrIWDL~s 2543 (2548)
-|.. +.|||.||.||-||-+.
T Consensus 601 ~P~~~~FFt~gKD~kvKqWDg~k 623 (888)
T KOG0306|consen 601 LPKTHLFFTCGKDGKVKQWDGEK 623 (888)
T ss_pred cccceeEEEecCcceEEeechhh
Confidence 9987 88999999999998654
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-17 Score=185.71 Aligned_cols=199 Identities=21% Similarity=0.310 Sum_probs=168.1
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeE
Q 000054 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtV 2346 (2548)
.|.++|.+++|+-+|++.++|+.|++|++|+.-.|..+ ++..+|...|.. .+.|...|+++| .|+.|
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~li--------ktYsghG~EVlD~~~s~Dnskf~s~G---gDk~v 83 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALI--------KTYSGHGHEVLDAALSSDNSKFASCG---GDKAV 83 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeeccccccee--------eeecCCCceeeeccccccccccccCC---CCceE
Confidence 35699999999999999999999999999999877543 458899988874 677888999998 89999
Q ss_pred EEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000054 2347 VVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2347 rIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
.+||+.+ ++..+.+.+|.+.|+.+.|+.. +..+++|+.|.++++||-| ..+-++++.+
T Consensus 84 ~vwDV~T--Gkv~Rr~rgH~aqVNtV~fNee-------sSVv~SgsfD~s~r~wDCR-S~s~ePiQil------------ 141 (307)
T KOG0316|consen 84 QVWDVNT--GKVDRRFRGHLAQVNTVRFNEE-------SSVVASGSFDSSVRLWDCR-SRSFEPIQIL------------ 141 (307)
T ss_pred EEEEccc--CeeeeecccccceeeEEEecCc-------ceEEEeccccceeEEEEcc-cCCCCccchh------------
Confidence 9999987 7899999999999999999988 6799999999999999987 3344444444
Q ss_pred ccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcc
Q 000054 2427 AHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSS 2506 (2548)
Q Consensus 2427 ~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl 2506 (2548)
......|.++.. .+..+++||.||+++.||++.|++...+
T Consensus 142 ------------------------dea~D~V~Si~v--~~heIvaGS~DGtvRtydiR~G~l~sDy-------------- 181 (307)
T KOG0316|consen 142 ------------------------DEAKDGVSSIDV--AEHEIVAGSVDGTVRTYDIRKGTLSSDY-------------- 181 (307)
T ss_pred ------------------------hhhcCceeEEEe--cccEEEeeccCCcEEEEEeecceeehhh--------------
Confidence 345567888877 5678999999999999999999887533
Q ss_pred cCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCcc
Q 000054 2507 RGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2507 ~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~l 2546 (2548)
-|| +|+++.|+++| .+.++.|+++++-|-++|.+
T Consensus 182 ~g~------pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl 217 (307)
T KOG0316|consen 182 FGH------PITSVSFSKDGNCSLASSLDSTLRLLDKETGKL 217 (307)
T ss_pred cCC------cceeEEecCCCCEEEEeeccceeeecccchhHH
Confidence 233 47888999999 78899999999999888753
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.6e-18 Score=196.42 Aligned_cols=208 Identities=17% Similarity=0.325 Sum_probs=174.0
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEE
Q 000054 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVW 2349 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIW 2349 (2548)
..+-|..|+|||++|++|+.||.|.+|+.-+|+...-........+..+...|.| |+.|...+|+|. .||.|++|
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs---qDGkIKvW 290 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS---QDGKIKVW 290 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC---cCCcEEEE
Confidence 5588999999999999999999999999998864332223333345667777776 888999999985 99999999
Q ss_pred ECCCCCCCcceeee-ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccc
Q 000054 2350 DTLAPPTSSRASIT-CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAH 2428 (2548)
Q Consensus 2350 Dl~t~~~k~v~sl~-gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~v 2428 (2548)
.+++ +.|++.|. +|+.+|+|+.|+.+ +..+.+++.|.+|++.- +++|++++.+
T Consensus 291 ri~t--G~ClRrFdrAHtkGvt~l~FSrD-------~SqiLS~sfD~tvRiHG---lKSGK~LKEf-------------- 344 (508)
T KOG0275|consen 291 RIET--GQCLRRFDRAHTKGVTCLSFSRD-------NSQILSASFDQTVRIHG---LKSGKCLKEF-------------- 344 (508)
T ss_pred EEec--chHHHHhhhhhccCeeEEEEccC-------cchhhcccccceEEEec---cccchhHHHh--------------
Confidence 9988 78888887 89999999999998 67999999999999999 7889998887
Q ss_pred ccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccC
Q 000054 2429 ADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRG 2508 (2548)
Q Consensus 2429 afSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~G 2508 (2548)
.||.+.|+...|.++|.++++++.||+|+||+.++.+++.+|+. -+
T Consensus 345 ----------------------rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~------------~~ 390 (508)
T KOG0275|consen 345 ----------------------RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP------------LG 390 (508)
T ss_pred ----------------------cCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC------------CC
Confidence 89999999999999999999999999999999999999998841 11
Q ss_pred CCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCCCcc
Q 000054 2509 FGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2509 H~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~sg~l 2546 (2548)
.. ..|.++-.-|.. ++.|-..++|.|-++.+...
T Consensus 391 ~d----~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvV 427 (508)
T KOG0275|consen 391 TD----YPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVV 427 (508)
T ss_pred Cc----ccceeEEEcCCCCceEEEEcCCCeEEEEeccceEE
Confidence 11 335555666665 88999999999988876544
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.6e-17 Score=183.89 Aligned_cols=244 Identities=21% Similarity=0.260 Sum_probs=178.7
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc--CCCEEEEEeCCCcEEEEEcCCCccc
Q 000054 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH--YGHRFASAALDGTVCTWQLEVGGRS 2306 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP--dG~~LaSGS~DGtVrVWDl~tgk~i 2306 (2548)
-.|..|||++.|++|+|+....+.....+..+.+ |.++|+.++|.. .|..||+++.||.|.||.-+.+.-.
T Consensus 21 yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~G-------h~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~ 93 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTG-------HSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWT 93 (299)
T ss_pred hhcceeeeecCCccEEEEEEcCCCCceeeeEecC-------CCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchh
Confidence 3588999999999999999987655444444444 569999999965 7999999999999999998877422
Q ss_pred ccccCccceeccCCcccEEE--EcCC--CCEEEEEeccCCCCeEEEEECCCCC-CCcceeeeccCCCeEEEEEccCCCC-
Q 000054 2307 NVRPMESCLCFSSHAMDVSY--ITSS--GSVIAAAGHSSNGINVVVWDTLAPP-TSSRASITCHEGGARSISVFDNDLG- 2380 (2548)
Q Consensus 2307 ~i~p~~s~~t~~gH~~~V~a--fSpd--GslLATgG~SS~DGtVrIWDl~t~~-~k~v~sl~gHs~~VtSLafsP~dlg- 2380 (2548)
+ ...+..|...|.+ +.|. |-.|+++ |.||.|.|.+.+... ........+|.-+|++++|.|....
T Consensus 94 k------~~e~~~h~~SVNsV~wapheygl~Laca---sSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 94 K------AYEHAAHSASVNSVAWAPHEYGLLLACA---SSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred h------hhhhhhhcccceeecccccccceEEEEe---eCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 1 2336677777764 4454 5566666 489999999988642 2234566799999999999998421
Q ss_pred ------CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000054 2381 ------SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2381 ------~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
....-..|++||.|..|+||+.. .++-+.. +.+.+|.
T Consensus 165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~---~~~w~~e----------------------------------~~l~~H~ 207 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFD---SDSWKLE----------------------------------RTLEGHK 207 (299)
T ss_pred cccccCcccccceeeccCCccceeeeecC---Ccchhhh----------------------------------hhhhhcc
Confidence 11122479999999999999943 2211110 1247899
Q ss_pred CCEEEEEEeCCC----CEEEEEeCCCcEEEEECCCC--cEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--
Q 000054 2455 GSVTRISTVPNT----SLFLTGSKDGDVKLWDAKAA--QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-- 2526 (2548)
Q Consensus 2455 ~~VtsLafSPdG----~~LaSGS~DGtIrIWDl~Tg--ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-- 2526 (2548)
+.|+.++|.|.- .+++++|.||+|.||..+.. +-..++ +... ...++.+.||..|
T Consensus 208 dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tl-------------l~~f----~~~~w~vSWS~sGn~ 270 (299)
T KOG1332|consen 208 DWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTL-------------LEEF----PDVVWRVSWSLSGNI 270 (299)
T ss_pred hhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccc-------------cccC----CcceEEEEEeccccE
Confidence 999999999953 68999999999999987621 111111 1111 1457888999999
Q ss_pred EEEEECCCcEEEEECC
Q 000054 2527 FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2527 LaSGS~DGtIrIWDL~ 2542 (2548)
|+.+++|+.|++|.-.
T Consensus 271 LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 271 LAVSGGDNKVTLWKEN 286 (299)
T ss_pred EEEecCCcEEEEEEeC
Confidence 7888999999999864
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-16 Score=204.39 Aligned_cols=211 Identities=14% Similarity=0.229 Sum_probs=147.4
Q ss_pred EEEEEEcCC-CCEEEEEECCCeEEEEEcCCCce-eEEEeccCCCCCCCCCCCCCeEEEEEccCCCE-EEEEeCCCcEEEE
Q 000054 2222 TRAFSSHPL-RPFFLVGSSNTHIYLWEFGKDKA-TATYGVLPAANVPPPYALASISALQFDHYGHR-FASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPd-G~~LASGS~DGsVrLWDl~tg~~-l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~-LaSGS~DGtVrVW 2298 (2548)
|.+++|+|+ +.+|++|+.||+|+|||+.++.. ...+.... ....+|...|.+++|+|++.. +++|+.||+|++|
T Consensus 77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~---~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIW 153 (568)
T PTZ00420 77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQ---CILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIW 153 (568)
T ss_pred EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccce---EEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEE
Confidence 799999997 78999999999999999986432 11110000 011346689999999998875 5799999999999
Q ss_pred EcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEcc
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
|+++++... .+. |...|. .|+++|++|++++ .|+.|+|||++. ++.+..+.+|.+.+.+..+..
T Consensus 154 Dl~tg~~~~--------~i~-~~~~V~SlswspdG~lLat~s---~D~~IrIwD~Rs--g~~i~tl~gH~g~~~s~~v~~ 219 (568)
T PTZ00420 154 DIENEKRAF--------QIN-MPKKLSSLKWNIKGNLLSGTC---VGKHMHIIDPRK--QEIASSFHIHDGGKNTKNIWI 219 (568)
T ss_pred ECCCCcEEE--------EEe-cCCcEEEEEECCCCCEEEEEe---cCCEEEEEECCC--CcEEEEEecccCCceeEEEEe
Confidence 999875321 122 334454 4899999999886 899999999987 677788999998765544332
Q ss_pred CCCCCCCCCCEEEEEeCCC----cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccC
Q 000054 2377 NDLGSGSVSPLIVTGGKGG----DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKA 2452 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DG----tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~g 2452 (2548)
.. .++.+.+++++|.|+ .|+|||+|.. ++.+.... ...
T Consensus 220 ~~--fs~d~~~IlTtG~d~~~~R~VkLWDlr~~--~~pl~~~~----------------------------------ld~ 261 (568)
T PTZ00420 220 DG--LGGDDNYILSTGFSKNNMREMKLWDLKNT--TSALVTMS----------------------------------IDN 261 (568)
T ss_pred ee--EcCCCCEEEEEEcCCCCccEEEEEECCCC--CCceEEEE----------------------------------ecC
Confidence 10 001166888888774 7999997642 23332220 022
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 000054 2453 HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQ 2487 (2548)
Q Consensus 2453 H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tge 2487 (2548)
+.+.+......++|.++++|+.|++|++|++..+.
T Consensus 262 ~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 262 ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 33344444445568999999999999999998764
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.6e-16 Score=185.35 Aligned_cols=228 Identities=16% Similarity=0.217 Sum_probs=171.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|.++.|+.+|.+||||+.+|.|+||+..++.....+.. ..+.|.=+.|+|.++.|+.|+.||.|-+|.+.
T Consensus 109 Vt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~----------e~~dieWl~WHp~a~illAG~~DGsvWmw~ip 178 (399)
T KOG0296|consen 109 VTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ----------EVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP 178 (399)
T ss_pred eEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec----------ccCceEEEEecccccEEEeecCCCcEEEEECC
Confidence 69999999999999999999999999999987777631 12678889999999999999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeec---------------
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC--------------- 2364 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g--------------- 2364 (2548)
.+. ..+.+.||..++.+ |.|+|+.++++. .||+|++||+.+ +.+++.+.+
T Consensus 179 ~~~--------~~kv~~Gh~~~ct~G~f~pdGKr~~tgy---~dgti~~Wn~kt--g~p~~~~~~~e~~~~~~~~~~~~~ 245 (399)
T KOG0296|consen 179 SQA--------LCKVMSGHNSPCTCGEFIPDGKRILTGY---DDGTIIVWNPKT--GQPLHKITQAEGLELPCISLNLAG 245 (399)
T ss_pred Ccc--------eeeEecCCCCCcccccccCCCceEEEEe---cCceEEEEecCC--CceeEEecccccCcCCcccccccc
Confidence 653 23458899999986 999999999985 899999999986 444443331
Q ss_pred ------------------------------------cCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccC
Q 000054 2365 ------------------------------------HEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATG 2408 (2548)
Q Consensus 2365 ------------------------------------Hs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TG 2408 (2548)
+...+.||.+.|. ++.-++.++|+.||+|.|||+ +..
T Consensus 246 ~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~----ss~lpL~A~G~vdG~i~iyD~---a~~ 318 (399)
T KOG0296|consen 246 STLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPS----SSKLPLAACGSVDGTIAIYDL---AAS 318 (399)
T ss_pred ceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccc----ccccchhhcccccceEEEEec---ccc
Confidence 1111112222222 223348899999999999994 333
Q ss_pred ceeeeecCCCCCCCccccccccCCC-CCCccCCCCCceEEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Q 000054 2409 KTKKHKHSDRGGSSINTCAHADAQT-GSGSKPGDQNGMLWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVK 2479 (2548)
Q Consensus 2409 k~l~tl~~~~~~s~~~~~~vafSpd-Gk~v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIr 2479 (2548)
+..... .+... ...+.|-++ -.+.+..++.+++||. +.||...|.+++++|++++++|+|.|++.+
T Consensus 319 ~~R~~c----~he~~-V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~ 393 (399)
T KOG0296|consen 319 TLRHIC----EHEDG-VTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTAL 393 (399)
T ss_pred hhheec----cCCCc-eEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEE
Confidence 332222 11122 223334442 3337888999999984 468999999999999999999999999999
Q ss_pred EEECC
Q 000054 2480 LWDAK 2484 (2548)
Q Consensus 2480 IWDl~ 2484 (2548)
||++.
T Consensus 394 VF~v~ 398 (399)
T KOG0296|consen 394 VFEVP 398 (399)
T ss_pred EEecC
Confidence 99874
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.6e-17 Score=196.60 Aligned_cols=253 Identities=18% Similarity=0.178 Sum_probs=184.1
Q ss_pred CCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCC
Q 000054 2263 ANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN 2342 (2548)
Q Consensus 2263 hs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~ 2342 (2548)
|.+...+|+..|+++++.|.|.+|++|+.|.+|++||+..... ..+.+..++....|......|++.|..|++.. .
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMda-s~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs---g 234 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDA-SMRSFRQLQPCETHQINSLQYSVTGDQILVVS---G 234 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccc-cchhhhccCcccccccceeeecCCCCeEEEEe---c
Confidence 3334556789999999999999999999999999999975432 12233444445667777777999988777664 5
Q ss_pred CCeEEEEECCCCC-------CCcc---eeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceee
Q 000054 2343 GINVVVWDTLAPP-------TSSR---ASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKK 2412 (2548)
Q Consensus 2343 DGtVrIWDl~t~~-------~k~v---~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~ 2412 (2548)
....+++|-.... .+.+ ..-+||...++|.+|+|.+ ...++|++.||++|+||+.... +.++
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~------k~~FlT~s~DgtlRiWdv~~~k--~q~q 306 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN------KEEFLTCSYDGTLRIWDVNNTK--SQLQ 306 (641)
T ss_pred CcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCc------ccceEEecCCCcEEEEecCCch--hhee
Confidence 6788999865210 0111 2334899999999999996 7799999999999999985433 3333
Q ss_pred eec-CCCCCCCccccccccCCCCCC--ccCCCCCceEEEc-----------ccCCCC--CEEEEEEeCCCCEEEEEeCCC
Q 000054 2413 HKH-SDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI-----------PKAHLG--SVTRISTVPNTSLFLTGSKDG 2476 (2548)
Q Consensus 2413 tl~-~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi-----------~~gH~~--~VtsLafSPdG~~LaSGS~DG 2476 (2548)
.+. ..........+.++|++||+. .+..|+.+.+|+. -.+|.. .|+||+|+++|++|++-|.|+
T Consensus 307 Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~ 386 (641)
T KOG0772|consen 307 VIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDD 386 (641)
T ss_pred EEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCC
Confidence 332 122334455677899999998 6678999999983 357877 999999999999999999999
Q ss_pred cEEEEECCC-CcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEE------CCCcEEEEECCC
Q 000054 2477 DVKLWDAKA-AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCG------GDGSVKLIQLED 2543 (2548)
Q Consensus 2477 tIrIWDl~T-gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS------~DGtIrIWDL~s 2543 (2548)
++++||++. .+++.+..+. ... -.-++++|||+. |+||. ..|++.+||-.+
T Consensus 387 tLKvWDLrq~kkpL~~~tgL--------------~t~--~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 387 TLKVWDLRQFKKPLNVRTGL--------------PTP--FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred ceeeeeccccccchhhhcCC--------------Ccc--CCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 999999986 4555544211 111 112566899999 66774 357888888654
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.7e-16 Score=184.49 Aligned_cols=239 Identities=15% Similarity=0.229 Sum_probs=176.5
Q ss_pred EEEEEEcC-CCCEEEEEECCCeEEEEEcCC-CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHP-LRPFFLVGSSNTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSP-dG~~LASGS~DGsVrLWDl~t-g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
|.+++|+| ...++++|+.||+||+|+++. |..... . ...|.++|.+++|+.||.++++|+.||.+++||
T Consensus 30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k--a-------~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK--A-------QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred hheeEeccccCceEEecccCCceEEEEEecCCcccch--h-------hhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 68899999 455666899999999999986 443332 1 123569999999999999999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEEE---EcCC-CCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEc
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSY---ITSS-GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~a---fSpd-GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafs 2375 (2548)
+.+++... +..|...|.+ +.+- -..|+|| |.|++|+.||++. ..++.++.- .+.+.++..-
T Consensus 101 L~S~Q~~~---------v~~Hd~pvkt~~wv~~~~~~cl~TG---SWDKTlKfWD~R~--~~pv~t~~L-PeRvYa~Dv~ 165 (347)
T KOG0647|consen 101 LASGQVSQ---------VAAHDAPVKTCHWVPGMNYQCLVTG---SWDKTLKFWDTRS--SNPVATLQL-PERVYAADVL 165 (347)
T ss_pred ccCCCeee---------eeecccceeEEEEecCCCcceeEec---ccccceeecccCC--CCeeeeeec-cceeeehhcc
Confidence 99886332 5567776653 4332 2467776 5999999999996 556666542 4566766654
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCC
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG 2455 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~ 2455 (2548)
. ++++.+..++.|.+|+++. +...... +...-.-
T Consensus 166 ~---------pm~vVata~r~i~vynL~n---~~te~k~----------------------------------~~SpLk~ 199 (347)
T KOG0647|consen 166 Y---------PMAVVATAERHIAVYNLEN---PPTEFKR----------------------------------IESPLKW 199 (347)
T ss_pred C---------ceeEEEecCCcEEEEEcCC---Ccchhhh----------------------------------hcCcccc
Confidence 3 4899999999999999753 1111110 0011334
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCC------ceeecEEEEEEcCCe--E
Q 000054 2456 SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGG------VVRAGVTDIQVVSRG--F 2527 (2548)
Q Consensus 2456 ~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~------~V~a~VtsLafSPdG--L 2527 (2548)
.++||+..++.+-.+.|+.+|.+.|..+..+.....|. |+.|+. .| ..|.+|+|+|.. |
T Consensus 200 Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFt------------FkCHR~~~~~~~~V-YaVNsi~FhP~hgtl 266 (347)
T KOG0647|consen 200 QTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFT------------FKCHRSTNSVNDDV-YAVNSIAFHPVHGTL 266 (347)
T ss_pred eeeEEEEEecCCceEeeeecceEEEEecCCCCccCcee------------EEEeccCCCCCCce-EEecceEeecccceE
Confidence 67899999998888999999999999998875444331 345542 24 457999999976 9
Q ss_pred EEEECCCcEEEEECCC
Q 000054 2528 LSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2528 aSGS~DGtIrIWDL~s 2543 (2548)
+|+|.||++.+||-+.
T Consensus 267 vTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 267 VTAGSDGTFSFWDKDA 282 (347)
T ss_pred EEecCCceEEEecchh
Confidence 9999999999999653
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.1e-16 Score=181.26 Aligned_cols=234 Identities=15% Similarity=0.139 Sum_probs=177.4
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEEC
Q 000054 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl 2351 (2548)
+.|.++.|+++|..+++++.|-++++||...++...... ...+...+.+|....+.++.+.. -.|.+|+.-++
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~------skkyG~~~~~Fth~~~~~i~sSt-k~d~tIryLsl 87 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN------SKKYGVDLACFTHHSNTVIHSST-KEDDTIRYLSL 87 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee------cccccccEEEEecCCceEEEccC-CCCCceEEEEe
Confidence 789999999999999999999999999999887554321 12233344455444444443321 15889999999
Q ss_pred CCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccC
Q 000054 2352 LAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADA 2431 (2548)
Q Consensus 2352 ~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafS 2431 (2548)
.. .+.++.|.||...|++++.+|. +..+++++.|++|++||+|. .+|...+ .......+++.
T Consensus 88 ~d--NkylRYF~GH~~~V~sL~~sP~-------~d~FlS~S~D~tvrLWDlR~---~~cqg~l------~~~~~pi~AfD 149 (311)
T KOG1446|consen 88 HD--NKYLRYFPGHKKRVNSLSVSPK-------DDTFLSSSLDKTVRLWDLRV---KKCQGLL------NLSGRPIAAFD 149 (311)
T ss_pred ec--CceEEEcCCCCceEEEEEecCC-------CCeEEecccCCeEEeeEecC---CCCceEE------ecCCCcceeEC
Confidence 76 7899999999999999999998 68999999999999999872 3333222 11234567899
Q ss_pred CCCCC--ccCCCCCceEEEccc-------------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccc
Q 000054 2432 QTGSG--SKPGDQNGMLWYIPK-------------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLH 2496 (2548)
Q Consensus 2432 pdGk~--v~s~D~sv~Iwdi~~-------------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~H 2496 (2548)
|.|-+ ++.....++++|+.. +-....+.|.|+|+|++++.+...+.+++.|.-+|..+.++.
T Consensus 150 p~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs--- 226 (311)
T KOG1446|consen 150 PEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS--- 226 (311)
T ss_pred CCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe---
Confidence 99998 455555789998421 335578899999999999999999999999999999988883
Q ss_pred cccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2497 ERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2497 s~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
++.+.-... .+..|+|++ +++|+.||+|.+|+++++.
T Consensus 227 -----------~~~~~~~~~-~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~ 265 (311)
T KOG1446|consen 227 -----------GYPNAGNLP-LSATFTPDSKFVLSGSDDGTIHVWNLETGK 265 (311)
T ss_pred -----------eccCCCCcc-eeEEECCCCcEEEEecCCCcEEEEEcCCCc
Confidence 111111011 244799999 7899999999999998874
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-17 Score=194.67 Aligned_cols=250 Identities=18% Similarity=0.269 Sum_probs=183.3
Q ss_pred cccccccCCccccCCCCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEE
Q 000054 2199 LGWETQDDFEDYVDPPATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISA 2276 (2548)
Q Consensus 2199 i~W~~~ed~e~~v~p~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~Vts 2276 (2548)
+.|....+.. +....++.+|. |..+.|+||.++|++++.|..+.+||..+|.....|.. +|...+.+
T Consensus 249 iiw~v~~d~~--~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~---------~~~~S~~s 317 (519)
T KOG0293|consen 249 IIWIVVYDVH--FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS---------GLGFSVSS 317 (519)
T ss_pred EEEEEecCcc--eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhccc---------CcCCCcce
Confidence 3454433332 33455666665 89999999999999999999999999999998888732 14578999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCc-ccEE--EEcCCCCEEEEEeccCCCCeEEEEECCC
Q 000054 2277 LQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHA-MDVS--YITSSGSVIAAAGHSSNGINVVVWDTLA 2353 (2548)
Q Consensus 2277 VaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~-~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t 2353 (2548)
++|.|||..+++|+.|+++..||++..... +..+.. ..|. ++++||+.+++.+ .|..|++++..+
T Consensus 318 c~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~---------~W~gvr~~~v~dlait~Dgk~vl~v~---~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 318 CAWCPDGFRFVTGSPDRTIIMWDLDGNILG---------NWEGVRDPKVHDLAITYDGKYVLLVT---VDKKIRLYNREA 385 (519)
T ss_pred eEEccCCceeEecCCCCcEEEecCCcchhh---------cccccccceeEEEEEcCCCcEEEEEe---cccceeeechhh
Confidence 999999999999999999999999854311 133322 2343 4789999998887 899999999875
Q ss_pred CCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCC
Q 000054 2354 PPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQT 2433 (2548)
Q Consensus 2354 ~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpd 2433 (2548)
...+. +.....+|+++..+.+ ++++++.-.+..|++||+ +..+.++.........-..-.+.. .-+
T Consensus 386 --~~dr~-lise~~~its~~iS~d-------~k~~LvnL~~qei~LWDl---~e~~lv~kY~Ghkq~~fiIrSCFg-g~~ 451 (519)
T KOG0293|consen 386 --RVDRG-LISEEQPITSFSISKD-------GKLALVNLQDQEIHLWDL---EENKLVRKYFGHKQGHFIIRSCFG-GGN 451 (519)
T ss_pred --hhhhc-cccccCceeEEEEcCC-------CcEEEEEcccCeeEEeec---chhhHHHHhhcccccceEEEeccC-CCC
Confidence 22222 3345678999999888 789999999999999995 434443333221111111111111 112
Q ss_pred CCC--ccCCCCCceEEE--------cccCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCC
Q 000054 2434 GSG--SKPGDQNGMLWY--------IPKAHLGSVTRISTVP-NTSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2434 Gk~--v~s~D~sv~Iwd--------i~~gH~~~VtsLafSP-dG~~LaSGS~DGtIrIWDl~T 2485 (2548)
..+ .++.|+.++||+ ++.||...|++|+|+| +..++|+||.||+||||....
T Consensus 452 ~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 452 DKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 222 778899999998 4679999999999999 568899999999999998763
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.7e-16 Score=189.52 Aligned_cols=240 Identities=17% Similarity=0.278 Sum_probs=182.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++.++||+|||+|+.|..|.||+.++.+.+..+. +|.+.|.+++|-...+.+++++.|++|++|+++
T Consensus 205 il~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~----------ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~ 274 (479)
T KOG0299|consen 205 ILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFK----------GHRGAVSSLAFRKGTSELYSASADRSVKVWSID 274 (479)
T ss_pred eEEEEEcCCCcEEEecCCCceEEEecCcccchhhccc----------ccccceeeeeeecCccceeeeecCCceEEEehh
Confidence 6888888999999999999999999999998887754 366999999999988899999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEEEcC--CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSYITS--SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSp--dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
.... ..++.+|...|..++. -++.+.+|| .|+++++|++. ......+.+|.+.+.|++|-.++
T Consensus 275 ~~s~--------vetlyGHqd~v~~IdaL~reR~vtVGg---rDrT~rlwKi~---eesqlifrg~~~sidcv~~In~~- 339 (479)
T KOG0299|consen 275 QLSY--------VETLYGHQDGVLGIDALSRERCVTVGG---RDRTVRLWKIP---EESQLIFRGGEGSIDCVAFINDE- 339 (479)
T ss_pred HhHH--------HHHHhCCccceeeechhcccceEEecc---ccceeEEEecc---ccceeeeeCCCCCeeeEEEeccc-
Confidence 5532 2347899998887654 334444444 89999999994 45667788999999999998775
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR 2459 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts 2459 (2548)
.+++|+.||.|.+|+ +.+.+.+.+.....+.. ++. +. -.+..+|++
T Consensus 340 -------HfvsGSdnG~IaLWs---~~KKkplf~~~~AHgv~----------~~~-------------~~-~~~~~Wits 385 (479)
T KOG0299|consen 340 -------HFVSGSDNGSIALWS---LLKKKPLFTSRLAHGVI----------PEL-------------DP-VNGNFWITS 385 (479)
T ss_pred -------ceeeccCCceEEEee---ecccCceeEeecccccc----------CCc-------------cc-cccccceee
Confidence 999999999999999 55556655542111100 000 00 123469999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCC----cEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEEEC
Q 000054 2460 ISTVPNTSLFLTGSKDGDVKLWDAKAA----QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGG 2532 (2548)
Q Consensus 2460 LafSPdG~~LaSGS~DGtIrIWDl~Tg----ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~ 2532 (2548)
|+..|..+++++|+.+|.|++|-+..| +++..++ +...|++++|+++| ++..|.
T Consensus 386 la~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-------------------~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 386 LAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-------------------LVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred eEecccCceEEecCCCCceEEEEecCCccccceeeecc-------------------cccEEEEEEEccCCCEEEEeccc
Confidence 999999999999999999999999887 3333331 22447888999999 444455
Q ss_pred CCcEEEE
Q 000054 2533 DGSVKLI 2539 (2548)
Q Consensus 2533 DGtIrIW 2539 (2548)
...+--|
T Consensus 447 EhRlGRW 453 (479)
T KOG0299|consen 447 EHRLGRW 453 (479)
T ss_pred cccccee
Confidence 4444333
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6e-17 Score=187.40 Aligned_cols=214 Identities=20% Similarity=0.278 Sum_probs=170.7
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCC------cccc----cccCccceeccCCcccEEE--EcCCCCEEEEE
Q 000054 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVG------GRSN----VRPMESCLCFSSHAMDVSY--ITSSGSVIAAA 2337 (2548)
Q Consensus 2270 H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tg------k~i~----i~p~~s~~t~~gH~~~V~a--fSpdGslLATg 2337 (2548)
|.+.+.+.+|++||.+++||+.|..|++.|++.. +... ........++..|...|.+ |.|...+++++
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~ 190 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISG 190 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEec
Confidence 6789999999999999999999999999998721 1000 0111234567789988875 89999999998
Q ss_pred eccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCC
Q 000054 2338 GHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSD 2417 (2548)
Q Consensus 2338 G~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~ 2417 (2548)
. .|++|+++|...+..+.....-.....|.++.|+|. |.+|+.|....++++|| +.+.+|...-
T Consensus 191 s---rD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPs-------GefllvgTdHp~~rlYd---v~T~Qcfvsa--- 254 (430)
T KOG0640|consen 191 S---RDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPS-------GEFLLVGTDHPTLRLYD---VNTYQCFVSA--- 254 (430)
T ss_pred c---CCCeEEEEecccHHHHHHHHHhhccceeeeEeecCC-------CceEEEecCCCceeEEe---ccceeEeeec---
Confidence 4 999999999975322222222234678999999999 89999999999999999 4455554332
Q ss_pred CCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccccc
Q 000054 2418 RGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHE 2497 (2548)
Q Consensus 2418 ~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs 2497 (2548)
+|+ .+|.+.|++|.+++.|++.+|||.||.|++||--+++++.++.
T Consensus 255 -------------nPd-----------------~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~---- 300 (430)
T KOG0640|consen 255 -------------NPD-----------------DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG---- 300 (430)
T ss_pred -------------Ccc-----------------cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH----
Confidence 111 5799999999999999999999999999999999999999885
Q ss_pred ccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2498 RHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2498 ~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+.|++ +.|.+..|..+| +++.|.|.++++|.+.++.
T Consensus 301 ---------~AH~g---sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 301 ---------NAHGG---SEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred ---------hhcCC---ceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 45555 447788999999 8899999999999998874
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=183.95 Aligned_cols=287 Identities=17% Similarity=0.227 Sum_probs=211.2
Q ss_pred ccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000054 2216 TVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
.++||. +.-++.....+.+.+++.|.+.+||.+++|.++.+|.+ |.+.|.+|+|++.+.++++++.|+
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~G----------H~GSVNsikfh~s~~L~lTaSGD~ 212 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTG----------HTGSVNSIKFHNSGLLLLTASGDE 212 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecc----------cccceeeEEeccccceEEEccCCc
Confidence 345554 56666666778899999999999999999999999853 679999999999999999999999
Q ss_pred cEEEEEcC----CCcccc---------------cccC-------------ccceeccCCcccEEE--EcCCCCEEEEEec
Q 000054 2294 TVCTWQLE----VGGRSN---------------VRPM-------------ESCLCFSSHAMDVSY--ITSSGSVIAAAGH 2339 (2548)
Q Consensus 2294 tVrVWDl~----tgk~i~---------------i~p~-------------~s~~t~~gH~~~V~a--fSpdGslLATgG~ 2339 (2548)
+..||... ..+... ..+. .+...+.+|...|.+ |-..|+.++++.
T Consensus 213 taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS- 291 (481)
T KOG0300|consen 213 TAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS- 291 (481)
T ss_pred chHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeee-
Confidence 99999721 110000 0000 112235677777765 566788999984
Q ss_pred cCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCC
Q 000054 2340 SSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRG 2419 (2548)
Q Consensus 2340 SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~ 2419 (2548)
.|++..+||+++ +..+..+.||....+.++-+|. ..++++.+.|-+.++||+|. .-..+..| .+
T Consensus 292 --WDRTAnlwDVEt--ge~v~~LtGHd~ELtHcstHpt-------QrLVvTsSrDtTFRLWDFRe--aI~sV~VF---QG 355 (481)
T KOG0300|consen 292 --WDRTANLWDVET--GEVVNILTGHDSELTHCSTHPT-------QRLVVTSSRDTTFRLWDFRE--AIQSVAVF---QG 355 (481)
T ss_pred --ccccceeeeecc--CceeccccCcchhccccccCCc-------ceEEEEeccCceeEeccchh--hcceeeee---cc
Confidence 999999999987 7899999999999999998988 67999999999999999872 11222222 11
Q ss_pred CCCccccccccCCCCCC-ccCCCCCceEEEccc--------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 000054 2420 GSSINTCAHADAQTGSG-SKPGDQNGMLWYIPK--------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVY 2490 (2548)
Q Consensus 2420 ~s~~~~~~vafSpdGk~-v~s~D~sv~Iwdi~~--------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~ 2490 (2548)
+ ....+...|..+.+. .++.|.++++|++.. .-.++++.++.+..+.+++.--....|++||++ |..+.
T Consensus 356 H-tdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDln-G~Rla 433 (481)
T KOG0300|consen 356 H-TDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLN-GNRLA 433 (481)
T ss_pred c-ccceeEEEEecCCceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecC-CCccc
Confidence 1 222345566777666 666777888888532 235677788888777788877777888888886 44444
Q ss_pred EecccccccccccCcccCCCCceeecEEEEEEcCCe----EEEEECCCcEEEEECCCC
Q 000054 2491 HWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG----FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2491 tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG----LaSGS~DGtIrIWDL~sg 2544 (2548)
.++ +. .-+||. -+|++++|..+. |++||.|..+.-|++...
T Consensus 434 RlP----rt-----sRqgHr----RMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 434 RLP----RT-----SRQGHR----RMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCC----cc-----cccccc----eeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 442 11 136776 456788998776 999999999999998654
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.6e-17 Score=196.27 Aligned_cols=248 Identities=17% Similarity=0.207 Sum_probs=188.2
Q ss_pred ccccccccCCccccCCCCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeE
Q 000054 2198 ALGWETQDDFEDYVDPPATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASIS 2275 (2548)
Q Consensus 2198 ~i~W~~~ed~e~~v~p~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~Vt 2275 (2548)
...|+..++. .+.+++.+|. |+.++|+++|..+++++.|+.+++||+++|++...+.. ...++
T Consensus 239 vklW~vy~~~----~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-----------~~~~~ 303 (503)
T KOG0282|consen 239 VKLWNVYDDR----RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-----------DKVPT 303 (503)
T ss_pred EEEEEEecCc----ceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-----------CCCce
Confidence 3455544433 3456677776 89999999999999999999999999999999999853 25689
Q ss_pred EEEEccCC-CEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECC
Q 000054 2276 ALQFDHYG-HRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTL 2352 (2548)
Q Consensus 2276 sVaFSPdG-~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~ 2352 (2548)
++.|+|++ +.|++|+.|+.|+.||+++++.+ +.+..|-..|.. |-++|+.++++ |+|++++||+.+
T Consensus 304 cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv--------qeYd~hLg~i~~i~F~~~g~rFiss---SDdks~riWe~~ 372 (503)
T KOG0282|consen 304 CVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV--------QEYDRHLGAILDITFVDEGRRFISS---SDDKSVRIWENR 372 (503)
T ss_pred eeecCCCCCcEEEEecCCCcEEEEeccchHHH--------HHHHhhhhheeeeEEccCCceEeee---ccCccEEEEEcC
Confidence 99999988 89999999999999999998633 235566666653 66899999997 499999999998
Q ss_pred CCCCCcce-eeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccC
Q 000054 2353 APPTSSRA-SITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADA 2431 (2548)
Q Consensus 2353 t~~~k~v~-sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafS 2431 (2548)
.+ ..+. ....+.....++..+|+ +++++.-+.|..|.++.+...-.....+.+ .+.......+.+.||
T Consensus 373 ~~--v~ik~i~~~~~hsmP~~~~~P~-------~~~~~aQs~dN~i~ifs~~~~~r~nkkK~f--eGh~vaGys~~v~fS 441 (503)
T KOG0282|consen 373 IP--VPIKNIADPEMHTMPCLTLHPN-------GKWFAAQSMDNYIAIFSTVPPFRLNKKKRF--EGHSVAGYSCQVDFS 441 (503)
T ss_pred CC--ccchhhcchhhccCcceecCCC-------CCeehhhccCceEEEEecccccccCHhhhh--cceeccCceeeEEEc
Confidence 63 2222 22233456678888888 789999999999999996421111111111 122233445678999
Q ss_pred CCCCC--ccCCCCCceEEEc--------ccCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEE
Q 000054 2432 QTGSG--SKPGDQNGMLWYI--------PKAHLGSVTRISTVPNT-SLFLTGSKDGDVKLWD 2482 (2548)
Q Consensus 2432 pdGk~--v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPdG-~~LaSGS~DGtIrIWD 2482 (2548)
|||++ .+..++.+.+|+. .++|+++|..+.|+|.. ..+||++.||.|++||
T Consensus 442 pDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 442 PDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99999 5555666778873 56899999999999964 7899999999999996
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=199.16 Aligned_cols=219 Identities=17% Similarity=0.290 Sum_probs=173.3
Q ss_pred CCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc--eeEEEeccCCCCCCCCCCCCCeEEEEE-ccCCCEEEE
Q 000054 2214 PATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK--ATATYGVLPAANVPPPYALASISALQF-DHYGHRFAS 2288 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~--~l~t~~~l~ghs~~~~~H~~~VtsVaF-SPdG~~LaS 2288 (2548)
.+.++.|. +..+....+|+.|++++.|.+|++|+...+. +..+++. |.+-|.|++. -++...+|+
T Consensus 66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~----------H~DYVkcla~~ak~~~lvaS 135 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRT----------HKDYVKCLAYIAKNNELVAS 135 (735)
T ss_pred hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhc----------ccchheeeeecccCceeEEe
Confidence 44555555 5555555788899999999999999998763 4444432 6699999999 778999999
Q ss_pred EeCCCcEEEEEcCCCcccccccC--ccceecc-CCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee
Q 000054 2289 AALDGTVCTWQLEVGGRSNVRPM--ESCLCFS-SHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT 2363 (2548)
Q Consensus 2289 GS~DGtVrVWDl~tgk~i~i~p~--~s~~t~~-gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~ 2363 (2548)
||-|+.|.+||++++.......+ .+..... |+...|.+ .++.|..|++|| .++.+++||.++ .+.+..++
T Consensus 136 gGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGg---tek~lr~wDprt--~~kimkLr 210 (735)
T KOG0308|consen 136 GGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGG---TEKDLRLWDPRT--CKKIMKLR 210 (735)
T ss_pred cCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecC---cccceEEecccc--ccceeeee
Confidence 99999999999998732111111 1112223 77788876 466777888887 789999999998 67788888
Q ss_pred ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCC
Q 000054 2364 CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQN 2443 (2548)
Q Consensus 2364 gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~s 2443 (2548)
||++.|.++..+++ |..++++++||+|++||++ ..+|+.++
T Consensus 211 GHTdNVr~ll~~dD-------Gt~~ls~sSDgtIrlWdLg---qQrCl~T~----------------------------- 251 (735)
T KOG0308|consen 211 GHTDNVRVLLVNDD-------GTRLLSASSDGTIRLWDLG---QQRCLATY----------------------------- 251 (735)
T ss_pred ccccceEEEEEcCC-------CCeEeecCCCceEEeeecc---ccceeeeE-----------------------------
Confidence 99999999999988 8999999999999999954 46777776
Q ss_pred ceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-CcEEEEec
Q 000054 2444 GMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA-AQLVYHWS 2493 (2548)
Q Consensus 2444 v~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~T-gell~tL~ 2493 (2548)
..|...|+++..+|+-..+++|+.||.|..=|+++ .+....++
T Consensus 252 -------~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick 295 (735)
T KOG0308|consen 252 -------IVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICK 295 (735)
T ss_pred -------EeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeec
Confidence 67999999999999999999999999999999988 34444443
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.3e-16 Score=185.80 Aligned_cols=244 Identities=17% Similarity=0.207 Sum_probs=188.5
Q ss_pred CCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC
Q 000054 2214 PATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL 2291 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~ 2291 (2548)
...+.||. ++.+.+||+...+++++.|-.|+||...........+ .|.++|+.+..+|.|.||++++.
T Consensus 254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~----------~h~~~V~~ls~h~tgeYllsAs~ 323 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSR----------PHEEPVTGLSLHPTGEYLLSASN 323 (506)
T ss_pred hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccc----------cccccceeeeeccCCcEEEEecC
Confidence 34566766 8999999999999999999999999988766544443 26699999999999999999999
Q ss_pred CCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe
Q 000054 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA 2369 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V 2369 (2548)
||+..+.|++++....... .......+. .|+|||.+|.+|. .|+.|+|||+.. ...+..|.+|+++|
T Consensus 324 d~~w~Fsd~~~g~~lt~vs------~~~s~v~~ts~~fHpDgLifgtgt---~d~~vkiwdlks--~~~~a~Fpght~~v 392 (506)
T KOG0289|consen 324 DGTWAFSDISSGSQLTVVS------DETSDVEYTSAAFHPDGLIFGTGT---PDGVVKIWDLKS--QTNVAKFPGHTGPV 392 (506)
T ss_pred CceEEEEEccCCcEEEEEe------eccccceeEEeeEcCCceEEeccC---CCceEEEEEcCC--ccccccCCCCCCce
Confidence 9999999999987543211 111112233 3999999999985 899999999987 45788999999999
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEc
Q 000054 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYI 2449 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi 2449 (2548)
..++|+.+ |-+|++++.|+.|++||+|.... .+++.
T Consensus 393 k~i~FsEN-------GY~Lat~add~~V~lwDLRKl~n---~kt~~---------------------------------- 428 (506)
T KOG0289|consen 393 KAISFSEN-------GYWLATAADDGSVKLWDLRKLKN---FKTIQ---------------------------------- 428 (506)
T ss_pred eEEEeccC-------ceEEEEEecCCeEEEEEehhhcc---cceee----------------------------------
Confidence 99999988 78999999999999999885432 22220
Q ss_pred ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc--EEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-
Q 000054 2450 PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQ--LVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG- 2526 (2548)
Q Consensus 2450 ~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tge--ll~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG- 2526 (2548)
......|.++.|++.|.+|+.+|.|=.|++++-.+.+ .+.++ .-|.+ ..+.+.|..+.
T Consensus 429 -l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~--------------~~~sg----~st~v~Fg~~aq 489 (506)
T KOG0289|consen 429 -LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKEL--------------ADHSG----LSTGVRFGEHAQ 489 (506)
T ss_pred -ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehh--------------hhccc----ccceeeecccce
Confidence 1122378999999999999999888777777754433 33333 33432 23455787766
Q ss_pred -EEEEECCCcEEEEEC
Q 000054 2527 -FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2527 -LaSGS~DGtIrIWDL 2541 (2548)
++++|.|..++++.+
T Consensus 490 ~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 490 YLASTSMDAILRLYAL 505 (506)
T ss_pred EEeeccchhheEEeec
Confidence 889999999999875
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.1e-16 Score=188.45 Aligned_cols=233 Identities=19% Similarity=0.229 Sum_probs=187.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.++...|..+.+++|+.|..+.++|...++.+.++++ |...|+.+.|+++...+++++.|..|++|.+.
T Consensus 222 i~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~G----------h~kki~~v~~~~~~~~v~~aSad~~i~vws~~ 291 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKG----------HTKKITSVKFHKDLDTVITASADEIIRVWSVP 291 (506)
T ss_pred eeEEeecCCCCcceecCCCCceEEEecchhhhhhhccC----------cceEEEEEEeccchhheeecCCcceEEeeccc
Confidence 57777778778999999999999999999988888743 66899999999999999999999999999987
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeec--cCCCeEEEEEccC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC--HEGGARSISVFDN 2377 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g--Hs~~VtSLafsP~ 2377 (2548)
...+. .....|...|.. ..|.|.+|+++. +|++..+.|+++ +..+..... ..-.+++.+|+|+
T Consensus 292 ~~s~~--------~~~~~h~~~V~~ls~h~tgeYllsAs---~d~~w~Fsd~~~--g~~lt~vs~~~s~v~~ts~~fHpD 358 (506)
T KOG0289|consen 292 LSSEP--------TSSRPHEEPVTGLSLHPTGEYLLSAS---NDGTWAFSDISS--GSQLTVVSDETSDVEYTSAAFHPD 358 (506)
T ss_pred cccCc--------cccccccccceeeeeccCCcEEEEec---CCceEEEEEccC--CcEEEEEeeccccceeEEeeEcCC
Confidence 65422 235678888885 689999999984 999999999987 444333322 2235899999999
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCE
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSV 2457 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~V 2457 (2548)
|.++.+|..||.|+|||+ .++..+..| .+|+++|
T Consensus 359 -------gLifgtgt~d~~vkiwdl---ks~~~~a~F------------------------------------pght~~v 392 (506)
T KOG0289|consen 359 -------GLIFGTGTPDGVVKIWDL---KSQTNVAKF------------------------------------PGHTGPV 392 (506)
T ss_pred -------ceEEeccCCCceEEEEEc---CCccccccC------------------------------------CCCCCce
Confidence 789999999999999994 444444443 7899999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCc
Q 000054 2458 TRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGS 2535 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGt 2535 (2548)
+.++|+.+|-+|++++.|+.|++||++.-+..+++.. ... ..|.++.|++.| |+.+|.|=.
T Consensus 393 k~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l------------~~~-----~~v~s~~fD~SGt~L~~~g~~l~ 455 (506)
T KOG0289|consen 393 KAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL------------DEK-----KEVNSLSFDQSGTYLGIAGSDLQ 455 (506)
T ss_pred eEEEeccCceEEEEEecCCeEEEEEehhhcccceeec------------ccc-----ccceeEEEcCCCCeEEeecceeE
Confidence 9999999999999999999999999998877776631 111 125677899999 777777766
Q ss_pred EEEEE
Q 000054 2536 VKLIQ 2540 (2548)
Q Consensus 2536 IrIWD 2540 (2548)
|++++
T Consensus 456 Vy~~~ 460 (506)
T KOG0289|consen 456 VYICK 460 (506)
T ss_pred EEEEe
Confidence 66665
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.2e-17 Score=193.79 Aligned_cols=240 Identities=18% Similarity=0.238 Sum_probs=182.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+..+.|-++...|++|+.|..|++|+...++. .....+.+ ..+.|+++.|.++++.+++++.|+.+++|+++
T Consensus 178 v~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~-~~~~tLaG-------s~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd 249 (459)
T KOG0288|consen 178 VHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS-ELISTLAG-------SLGNITSIDFDSDNKHVIAASNDKNLRLWNVD 249 (459)
T ss_pred cceeEEccCcchhhhcchhhhhhhhhcccchh-hhhhhhhc-------cCCCcceeeecCCCceEEeecCCCceeeeecc
Confidence 47778889989999999999999999886651 11122222 34789999999999999999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
..+.. .++.+|...|++ +......+++| |.|++|++||+.. ..|..++- -...+..|...+.
T Consensus 250 ~~r~~--------~TLsGHtdkVt~ak~~~~~~~vVsg---s~DRtiK~WDl~k--~~C~kt~l-~~S~cnDI~~~~~-- 313 (459)
T KOG0288|consen 250 SLRLR--------HTLSGHTDKVTAAKFKLSHSRVVSG---SADRTIKLWDLQK--AYCSKTVL-PGSQCNDIVCSIS-- 313 (459)
T ss_pred chhhh--------hhhcccccceeeehhhccccceeec---cccchhhhhhhhh--hheecccc-ccccccceEecce--
Confidence 77532 358899999987 43333446666 4999999999975 45544432 2345566665543
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR 2459 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts 2459 (2548)
.+++|-.|++|++||+| ++.+.+.. ..+ +.|++
T Consensus 314 -------~~~SgH~DkkvRfwD~R---s~~~~~sv------------------------------------~~g-g~vtS 346 (459)
T KOG0288|consen 314 -------DVISGHFDKKVRFWDIR---SADKTRSV------------------------------------PLG-GRVTS 346 (459)
T ss_pred -------eeeecccccceEEEecc---CCceeeEe------------------------------------ecC-cceee
Confidence 78899999999999965 34444443 223 48999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEE
Q 000054 2460 ISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVK 2537 (2548)
Q Consensus 2460 LafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIr 2537 (2548)
+..+++|..|.+.+.|.++.+.|+++.+..+++... .| ..+|. ++.+.|||++ +++||.||.|+
T Consensus 347 l~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~----g~----k~asD------wtrvvfSpd~~YvaAGS~dgsv~ 412 (459)
T KOG0288|consen 347 LDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAE----GF----KCASD------WTRVVFSPDGSYVAAGSADGSVY 412 (459)
T ss_pred EeeccCCeEEeeecCCCceeeeecccccEEEEeecc----cc----ccccc------cceeEECCCCceeeeccCCCcEE
Confidence 999999999999999999999999999998877311 11 12332 4556899999 88999999999
Q ss_pred EEECCCCcc
Q 000054 2538 LIQLEDYQH 2546 (2548)
Q Consensus 2538 IWDL~sg~l 2546 (2548)
||++.++.+
T Consensus 413 iW~v~tgKl 421 (459)
T KOG0288|consen 413 IWSVFTGKL 421 (459)
T ss_pred EEEccCceE
Confidence 999998865
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-16 Score=200.58 Aligned_cols=247 Identities=17% Similarity=0.263 Sum_probs=180.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWDl 2300 (2548)
..+++..++-..++.++. ..+.||.+.............+. +... .-.+..|.|+. +.++|||++.+|.|.+||+
T Consensus 42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~--kqn~-~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdl 117 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKT--KQNK-FYSAADVKWGQLYSNLIATCSTNGVISVWDL 117 (839)
T ss_pred cceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeeccc--ccce-eeehhhcccccchhhhheeecCCCcEEEEec
Confidence 356666677777777655 35777777643211111100000 1111 13567788886 5889999999999999999
Q ss_pred CCCcccccccCccceeccCCcccEEE--EcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVSY--ITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
..... ......+..|...+.+ |++ ..++|++|+ .||+|++||++. .+...++.+....|+.|.|+|.
T Consensus 118 nk~~r-----nk~l~~f~EH~Rs~~~ldfh~tep~iliSGS---QDg~vK~~DlR~--~~S~~t~~~nSESiRDV~fsp~ 187 (839)
T KOG0269|consen 118 NKSIR-----NKLLTVFNEHERSANKLDFHSTEPNILISGS---QDGTVKCWDLRS--KKSKSTFRSNSESIRDVKFSPG 187 (839)
T ss_pred Ccccc-----chhhhHhhhhccceeeeeeccCCccEEEecC---CCceEEEEeeec--ccccccccccchhhhceeeccC
Confidence 85321 1223457888887764 544 446777764 999999999997 5677788888899999999999
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCE
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSV 2457 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~V 2457 (2548)
. +..++++...|.+++||+|+ ..++...+ .+|.++|
T Consensus 188 ~------~~~F~s~~dsG~lqlWDlRq--p~r~~~k~------------------------------------~AH~GpV 223 (839)
T KOG0269|consen 188 Y------GNKFASIHDSGYLQLWDLRQ--PDRCEKKL------------------------------------TAHNGPV 223 (839)
T ss_pred C------CceEEEecCCceEEEeeccC--chhHHHHh------------------------------------hcccCce
Confidence 6 88999999999999999985 23343343 7899999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCcE--EEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEEE-
Q 000054 2458 TRISTVPNTSLFLTGSKDGDVKLWDAKAAQL--VYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCG- 2531 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS~DGtIrIWDl~Tgel--l~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS- 2531 (2548)
.|+.|+|++.+|||||.|++|+|||+.+++. +.++ ++ -+.|..++|-|.. |++|+
T Consensus 224 ~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI------nT-------------iapv~rVkWRP~~~~hLAtcsm 284 (839)
T KOG0269|consen 224 LCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI------NT-------------IAPVGRVKWRPARSYHLATCSM 284 (839)
T ss_pred EEEeecCCCceeeecCCCccEEEEeccCCCccceeEE------ee-------------cceeeeeeeccCccchhhhhhc
Confidence 9999999999999999999999999986543 2222 11 1668899999998 88775
Q ss_pred -CCCcEEEEECCCCc
Q 000054 2532 -GDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2532 -~DGtIrIWDL~sg~ 2545 (2548)
.|-.|+|||+....
T Consensus 285 v~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 285 VVDTSVHVWDVRRPY 299 (839)
T ss_pred cccceEEEEeecccc
Confidence 58899999997653
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-15 Score=178.17 Aligned_cols=260 Identities=15% Similarity=0.185 Sum_probs=189.9
Q ss_pred EEEEECCCeEEEEEcCCCc------eeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccc
Q 000054 2234 FLVGSSNTHIYLWEFGKDK------ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSN 2307 (2548)
Q Consensus 2234 LASGS~DGsVrLWDl~tg~------~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~ 2307 (2548)
+++|+....|.=+++.-.. +..++... +....|.+.|++++.+ +.++|+|+.|-+|++||+......
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~l----F~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ql- 76 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPL----FAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQL- 76 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeecc----ccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhh-
Confidence 5667777766666654221 11111110 1234578999999986 999999999999999999866433
Q ss_pred cccCccceeccCCcccEEE--EcCCC--CEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCC
Q 000054 2308 VRPMESCLCFSSHAMDVSY--ITSSG--SVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGS 2383 (2548)
Q Consensus 2308 i~p~~s~~t~~gH~~~V~a--fSpdG--slLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs 2383 (2548)
..+..|.+.|.+ |.+.- +.+++|. +||.|.+|+... ...+..+++|.+.|+.++.+|.
T Consensus 77 -------g~ll~HagsitaL~F~~~~S~shLlS~s---dDG~i~iw~~~~--W~~~~slK~H~~~Vt~lsiHPS------ 138 (362)
T KOG0294|consen 77 -------GILLSHAGSITALKFYPPLSKSHLLSGS---DDGHIIIWRVGS--WELLKSLKAHKGQVTDLSIHPS------ 138 (362)
T ss_pred -------cceeccccceEEEEecCCcchhheeeec---CCCcEEEEEcCC--eEEeeeecccccccceeEecCC------
Confidence 235677888876 44433 2677764 999999999975 7889999999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEEcccCC-----C--C
Q 000054 2384 VSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWYIPKAH-----L--G 2455 (2548)
Q Consensus 2384 ~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwdi~~gH-----~--~ 2455 (2548)
+++-++.|.|+.+++|| +-+|+.-...+.. .....+.|+|.|.. +....+.+-+|.+..++ . .
T Consensus 139 -~KLALsVg~D~~lr~WN---LV~Gr~a~v~~L~-----~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~ 209 (362)
T KOG0294|consen 139 -GKLALSVGGDQVLRTWN---LVRGRVAFVLNLK-----NKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPK 209 (362)
T ss_pred -CceEEEEcCCceeeeeh---hhcCccceeeccC-----CcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccc
Confidence 78999999999999999 4455544333111 11233778899885 66777778888754332 2 3
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECC
Q 000054 2456 SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGD 2533 (2548)
Q Consensus 2456 ~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~D 2533 (2548)
.+.++.|. ++..|++|+.|+.|++||..+..+...+ .+|.++|.+.+. --.|++ |+|+|.|
T Consensus 210 r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~--------------~AH~~RVK~i~~--~~~~~~~~lvTaSSD 272 (362)
T KOG0294|consen 210 RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEF--------------LAHENRVKDIAS--YTNPEHEYLVTASSD 272 (362)
T ss_pred cceeeeec-CCceEEEecCCceEEEeccCCCccceee--------------ecchhheeeeEE--EecCCceEEEEeccC
Confidence 46677665 6778899999999999999987777655 789888865421 234556 8999999
Q ss_pred CcEEEEECCCC
Q 000054 2534 GSVKLIQLEDY 2544 (2548)
Q Consensus 2534 GtIrIWDL~sg 2544 (2548)
|.|+|||++..
T Consensus 273 G~I~vWd~~~~ 283 (362)
T KOG0294|consen 273 GFIKVWDIDME 283 (362)
T ss_pred ceEEEEEcccc
Confidence 99999999765
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.1e-16 Score=188.38 Aligned_cols=193 Identities=20% Similarity=0.285 Sum_probs=151.1
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWD 2299 (2548)
+..+.|+|++. .+++|+.|+.+++||+.+......+ .+|.+.|.+.+|+| +++.++||+.||+|++||
T Consensus 113 v~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l----------~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~D 182 (487)
T KOG0310|consen 113 VHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL----------SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWD 182 (487)
T ss_pred eeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe----------cCCcceeEeeccccCCCeEEEecCCCceEEEEE
Confidence 78888999765 5667899999999999988753233 34679999999999 467999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
++.... . ..--.|..+|- .+-|.|.+|+++| ...|++||+.++ ++.+..+..|...|+|+.+..+
T Consensus 183 tR~~~~-~-------v~elnhg~pVe~vl~lpsgs~iasAg----Gn~vkVWDl~~G-~qll~~~~~H~KtVTcL~l~s~ 249 (487)
T KOG0310|consen 183 TRSLTS-R-------VVELNHGCPVESVLALPSGSLIASAG----GNSVKVWDLTTG-GQLLTSMFNHNKTVTCLRLASD 249 (487)
T ss_pred eccCCc-e-------eEEecCCCceeeEEEcCCCCEEEEcC----CCeEEEEEecCC-ceehhhhhcccceEEEEEeecC
Confidence 986521 1 11224555554 4678899999986 679999999864 4555556569999999999886
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCE
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSV 2457 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~V 2457 (2548)
+..|++||-||.|++|| ..+.+.+..+ .-.++|
T Consensus 250 -------~~rLlS~sLD~~VKVfd---~t~~Kvv~s~-------------------------------------~~~~pv 282 (487)
T KOG0310|consen 250 -------STRLLSGSLDRHVKVFD---TTNYKVVHSW-------------------------------------KYPGPV 282 (487)
T ss_pred -------CceEeecccccceEEEE---ccceEEEEee-------------------------------------ecccce
Confidence 68999999999999999 4444544443 256799
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECC
Q 000054 2458 TRISTVPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
.+++.+|+++.++.|..||.+.+=+..
T Consensus 283 Lsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 283 LSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred eeEEecCCCceEEEecccceeeeehhh
Confidence 999999999999999999998876443
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-15 Score=191.25 Aligned_cols=295 Identities=18% Similarity=0.212 Sum_probs=218.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCE-EEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHR-FASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~-LaSGS~DGtVrVWDl 2300 (2548)
++++.-+|--..+|.|..+|+|.|+++..++.+.+|+.- .+.|+++.|.-||+. +++|+..|.+.+||+
T Consensus 205 IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d----------~g~VtslSFrtDG~p~las~~~~G~m~~wDL 274 (910)
T KOG1539|consen 205 ITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQD----------WGRVTSLSFRTDGNPLLASGRSNGDMAFWDL 274 (910)
T ss_pred eeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcc----------ccceeEEEeccCCCeeEEeccCCceEEEEEc
Confidence 577877788889999999999999999999999998631 288999999999865 567777799999999
Q ss_pred CCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCC--cceeeeccCCCeEEEEEcc
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTS--SRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k--~v~sl~gHs~~VtSLafsP 2376 (2548)
+..+... .....|...|.. +-+....+++++ .|+.+++|-.+++++. .++.-.||..+..++.|..
T Consensus 275 e~kkl~~-------v~~nah~~sv~~~~fl~~epVl~ta~---~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~ 344 (910)
T KOG1539|consen 275 EKKKLIN-------VTRNAHYGSVTGATFLPGEPVLVTAG---ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYG 344 (910)
T ss_pred CCCeeee-------eeeccccCCcccceecCCCceEeecc---CCCceeEEEeeCCCCcchheeeccCCCCCchheeeec
Confidence 9665433 234567666553 667778888887 7898888876655553 4566679999999999986
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceee-------------------------eec----------------
Q 000054 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKK-------------------------HKH---------------- 2415 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~-------------------------tl~---------------- 2415 (2548)
.+ +..+.+++.|++.+.+++.+-...+.+. .+.
T Consensus 345 ~~------g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h 418 (910)
T KOG1539|consen 345 SQ------GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAH 418 (910)
T ss_pred cC------cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEe
Confidence 64 7788899999988888874300000000 000
Q ss_pred -----------------------CCCCCCCccccccccCCCCCC--ccCCCCCceEEEcc-----------cCCCCCEEE
Q 000054 2416 -----------------------SDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIP-----------KAHLGSVTR 2459 (2548)
Q Consensus 2416 -----------------------~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~-----------~gH~~~Vts 2459 (2548)
..-........+++.++-|+. ++...+.+.++++. ..|.++|++
T Consensus 419 ~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~g 498 (910)
T KOG1539|consen 419 KGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTG 498 (910)
T ss_pred cCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeE
Confidence 000001123345566677776 77788888888853 368999999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccccc--------cccc-------------------ccCcccCCCCc
Q 000054 2460 ISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHE--------RHTF-------------------LQPSSRGFGGV 2512 (2548)
Q Consensus 2460 LafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs--------~hsf-------------------l~~tl~GH~~~ 2512 (2548)
++.+-.++.+++++.||.+++||..++.++..+.-.+. ...+ +.+.|.||++.
T Consensus 499 la~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nr 578 (910)
T KOG1539|consen 499 LAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNR 578 (910)
T ss_pred EEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccc
Confidence 99999999999999999999999998887666642111 0000 13447899876
Q ss_pred eeecEEEEEEcCCe--EEEEECCCcEEEEECCCCcc
Q 000054 2513 VRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2513 V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~l 2546 (2548)
| ++++||||| |++++.|++||+||+.++.+
T Consensus 579 i----td~~FS~DgrWlisasmD~tIr~wDlpt~~l 610 (910)
T KOG1539|consen 579 I----TDMTFSPDGRWLISASMDSTIRTWDLPTGTL 610 (910)
T ss_pred e----eeeEeCCCCcEEEEeecCCcEEEEeccCcce
Confidence 6 667999999 99999999999999998754
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.8e-17 Score=182.18 Aligned_cols=234 Identities=15% Similarity=0.187 Sum_probs=179.2
Q ss_pred ccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000054 2216 TVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
++++|. |.....+.+-..-|+++.|=+.+|||.-+|..+.++. |..-|.+++|+.|.++|+||+.++
T Consensus 54 tfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-----------hkhivk~~af~~ds~~lltgg~ek 122 (334)
T KOG0278|consen 54 TFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-----------HKHIVKAVAFSQDSNYLLTGGQEK 122 (334)
T ss_pred eeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-----------hhheeeeEEecccchhhhccchHH
Confidence 566665 5666655666677889999999999999998888773 557899999999999999999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
.++++|++..+ .+...+.+|...|.. |....+.|+++. +|++|++||.++ +..++++. -...|++
T Consensus 123 llrvfdln~p~-------App~E~~ghtg~Ir~v~wc~eD~~iLSSa---dd~tVRLWD~rT--gt~v~sL~-~~s~VtS 189 (334)
T KOG0278|consen 123 LLRVFDLNRPK-------APPKEISGHTGGIRTVLWCHEDKCILSSA---DDKTVRLWDHRT--GTEVQSLE-FNSPVTS 189 (334)
T ss_pred HhhhhhccCCC-------CCchhhcCCCCcceeEEEeccCceEEeec---cCCceEEEEecc--CcEEEEEe-cCCCCcc
Confidence 99999998543 334457888887763 555556666653 899999999997 67777775 3678999
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI 2449 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi 2449 (2548)
+.+++++ .+++-...+.|.+||. .+-..+++.. -.+........|+... .++.|..++.+|.
T Consensus 190 lEvs~dG--------~ilTia~gssV~Fwda---ksf~~lKs~k-----~P~nV~SASL~P~k~~fVaGged~~~~kfDy 253 (334)
T KOG0278|consen 190 LEVSQDG--------RILTIAYGSSVKFWDA---KSFGLLKSYK-----MPCNVESASLHPKKEFFVAGGEDFKVYKFDY 253 (334)
T ss_pred eeeccCC--------CEEEEecCceeEEecc---ccccceeecc-----CccccccccccCCCceEEecCcceEEEEEec
Confidence 9999983 5566667889999994 4445555542 2334455667777555 3445555566652
Q ss_pred ---------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000054 2450 ---------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLV 2489 (2548)
Q Consensus 2450 ---------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell 2489 (2548)
.++|-++|.||.|+|+|...++||+||+|++|-+..++.-
T Consensus 254 ~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 254 NTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred cCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 3689999999999999999999999999999998766543
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-15 Score=175.36 Aligned_cols=236 Identities=16% Similarity=0.213 Sum_probs=178.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+..+.|+|.+..|++++.||++++||.........++ |..++.+++|.+ ...+++|+.||.|+.+|++
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-----------~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-----------HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLN 83 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-----------cCCceeeeeccC-CceEEEeccCceEEEEEec
Confidence 5888999999999999999999999999875555543 568999999986 5569999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
++.... +..|...|.+ ..+....+++|| .|++|++||.+. ...+..+.. ...|.++...
T Consensus 84 ~~~~~~---------igth~~~i~ci~~~~~~~~vIsgs---WD~~ik~wD~R~--~~~~~~~d~-~kkVy~~~v~---- 144 (323)
T KOG1036|consen 84 TGNEDQ---------IGTHDEGIRCIEYSYEVGCVISGS---WDKTIKFWDPRN--KVVVGTFDQ-GKKVYCMDVS---- 144 (323)
T ss_pred CCccee---------eccCCCceEEEEeeccCCeEEEcc---cCccEEEEeccc--ccccccccc-CceEEEEecc----
Confidence 886432 5567887776 455566777775 999999999985 233333332 3478888765
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR 2459 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts 2459 (2548)
++.|+.|+.|..|.+||+|.+......+. ..-.-.++|
T Consensus 145 -----g~~LvVg~~~r~v~iyDLRn~~~~~q~re-------------------------------------S~lkyqtR~ 182 (323)
T KOG1036|consen 145 -----GNRLVVGTSDRKVLIYDLRNLDEPFQRRE-------------------------------------SSLKYQTRC 182 (323)
T ss_pred -----CCEEEEeecCceEEEEEcccccchhhhcc-------------------------------------ccceeEEEE
Confidence 44999999999999999986433221111 224457899
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCc----EEEEecccccccccccCcccCCCC-----ceeecEEEEEEcCCe--EE
Q 000054 2460 ISTVPNTSLFLTGSKDGDVKLWDAKAAQ----LVYHWSKLHERHTFLQPSSRGFGG-----VVRAGVTDIQVVSRG--FL 2528 (2548)
Q Consensus 2460 LafSPdG~~LaSGS~DGtIrIWDl~Tge----ll~tL~~~Hs~hsfl~~tl~GH~~-----~V~a~VtsLafSPdG--La 2528 (2548)
|++-|++.=++.+|-||.|.+=.+...+ ....| +.|.. .+--+|.+|+|+|-. |+
T Consensus 183 v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaF--------------kCHr~~~~~~~~~yPVNai~Fhp~~~tfa 248 (323)
T KOG1036|consen 183 VALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAF--------------KCHRLSEKDTEIIYPVNAIAFHPIHGTFA 248 (323)
T ss_pred EEEecCCCceEEEeecceEEEEccCCchHHhhhceeE--------------EeeecccCCceEEEEeceeEeccccceEE
Confidence 9999999999999999999886665542 22222 33321 222568999999986 99
Q ss_pred EEECCCcEEEEECCCC
Q 000054 2529 SCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2529 SGS~DGtIrIWDL~sg 2544 (2548)
|||.||.|.+||+.+.
T Consensus 249 TgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 249 TGGSDGIVNIWDLFNR 264 (323)
T ss_pred ecCCCceEEEccCcch
Confidence 9999999999999775
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-15 Score=173.23 Aligned_cols=238 Identities=16% Similarity=0.210 Sum_probs=177.7
Q ss_pred ccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC-
Q 000054 2216 TVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD- 2292 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D- 2292 (2548)
+..+|+ |.|+..+.+.+.++||+.|.++++||+.+|+++.+++. ...|..+.|+.+|++++.+..+
T Consensus 47 ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-----------~~~Vk~~~F~~~gn~~l~~tD~~ 115 (327)
T KOG0643|consen 47 TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-----------NSPVKRVDFSFGGNLILASTDKQ 115 (327)
T ss_pred eecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-----------CCeeEEEeeccCCcEEEEEehhh
Confidence 445555 78888889999999999999999999999999999863 2679999999999988777544
Q ss_pred ----CcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccC
Q 000054 2293 ----GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE 2366 (2548)
Q Consensus 2293 ----GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs 2366 (2548)
+.|.++|++..... +...++...+..+...+.. |+|-++.|++|. .||.|.+||.+++ .+.+...+-|+
T Consensus 116 mg~~~~v~~fdi~~~~~~-~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh---e~G~is~~da~~g-~~~v~s~~~h~ 190 (327)
T KOG0643|consen 116 MGYTCFVSVFDIRDDSSD-IDSEEPYLKIPTPDSKITSALWGPLGETIIAGH---EDGSISIYDARTG-KELVDSDEEHS 190 (327)
T ss_pred cCcceEEEEEEccCChhh-hcccCceEEecCCccceeeeeecccCCEEEEec---CCCcEEEEEcccC-ceeeechhhhc
Confidence 68999999854321 1111223334555555553 899999999987 8999999999873 45677777899
Q ss_pred CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCC--
Q 000054 2367 GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQN-- 2443 (2548)
Q Consensus 2367 ~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~s-- 2443 (2548)
..|+.+.++++ ..++++|+.|.+-++||++ +-.+++++.. ......++++|.-.. +.++...
T Consensus 191 ~~Ind~q~s~d-------~T~FiT~s~Dttakl~D~~---tl~v~Kty~t-----e~PvN~aaisP~~d~VilgGGqeA~ 255 (327)
T KOG0643|consen 191 SKINDLQFSRD-------RTYFITGSKDTTAKLVDVR---TLEVLKTYTT-----ERPVNTAAISPLLDHVILGGGQEAM 255 (327)
T ss_pred cccccccccCC-------cceEEecccCccceeeecc---ceeeEEEeee-----cccccceecccccceEEecCCceee
Confidence 99999999999 6899999999999999955 4455555421 122334556664333 1111111
Q ss_pred -------------ceEEE--------cccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 000054 2444 -------------GMLWY--------IPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2444 -------------v~Iwd--------i~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
.+.++ -.++|-++|++|+|+|+|+..++|++||.|++.-..
T Consensus 256 dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 256 DVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred eeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 12222 136899999999999999999999999999997654
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.5e-16 Score=199.14 Aligned_cols=228 Identities=23% Similarity=0.362 Sum_probs=168.3
Q ss_pred CCCEEEEEECCCeEEEEEcCC---CceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCcc
Q 000054 2230 LRPFFLVGSSNTHIYLWEFGK---DKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQLEVGGR 2305 (2548)
Q Consensus 2230 dG~~LASGS~DGsVrLWDl~t---g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWDl~tgk~ 2305 (2548)
+.++|||++..|.|.+||+.. ...+..|.+ |...|.++.|++ ..++|++|+.||+|++||++..+.
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~E----------H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNE----------HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhh----------hccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 467899999999999999987 333334432 568999999998 578899999999999999987653
Q ss_pred cccccCccceeccCCcccEE--EEcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCC
Q 000054 2306 SNVRPMESCLCFSSHAMDVS--YITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSG 2382 (2548)
Q Consensus 2306 i~i~p~~s~~t~~gH~~~V~--afSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~g 2382 (2548)
.. ++.+....|. .|+| .+..|+++. +.|.+++||++.+ .++...+.+|.+.|.|+.|+|+
T Consensus 169 ~~--------t~~~nSESiRDV~fsp~~~~~F~s~~---dsG~lqlWDlRqp-~r~~~k~~AH~GpV~c~nwhPn----- 231 (839)
T KOG0269|consen 169 KS--------TFRSNSESIRDVKFSPGYGNKFASIH---DSGYLQLWDLRQP-DRCEKKLTAHNGPVLCLNWHPN----- 231 (839)
T ss_pred cc--------cccccchhhhceeeccCCCceEEEec---CCceEEEeeccCc-hhHHHHhhcccCceEEEeecCC-----
Confidence 22 2334443333 2555 467888875 8899999999975 6788899999999999999997
Q ss_pred CCCCEEEEEeCCCcEEEEeCCccccCce--eeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEE
Q 000054 2383 SVSPLIVTGGKGGDVGIHDFRYIATGKT--KKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRI 2460 (2548)
Q Consensus 2383 s~g~lLVSGS~DGtVrLWDLR~l~TGk~--l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsL 2460 (2548)
..+|+|||.|+.|+|||+. +++. +.++ .-..+|.+|
T Consensus 232 --r~~lATGGRDK~vkiWd~t---~~~~~~~~tI-------------------------------------nTiapv~rV 269 (839)
T KOG0269|consen 232 --REWLATGGRDKMVKIWDMT---DSRAKPKHTI-------------------------------------NTIAPVGRV 269 (839)
T ss_pred --CceeeecCCCccEEEEecc---CCCccceeEE-------------------------------------eecceeeee
Confidence 7899999999999999953 2222 1111 123588999
Q ss_pred EEeCCC-CEEEEEeC--CCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEEECCC
Q 000054 2461 STVPNT-SLFLTGSK--DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGDG 2534 (2548)
Q Consensus 2461 afSPdG-~~LaSGS~--DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~DG 2534 (2548)
+|-|.. ..|++++. |-.|+|||++..-.-+ + ++..|.+. ++.++|.... +.+|+.||
T Consensus 270 kWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~--------~-----t~~eH~~~----vt~i~W~~~d~~~l~s~sKD~ 332 (839)
T KOG0269|consen 270 KWRPARSYHLATCSMVVDTSVHVWDVRRPYIPY--------A-----TFLEHTDS----VTGIAWDSGDRINLWSCSKDG 332 (839)
T ss_pred eeccCccchhhhhhccccceEEEEeeccccccc--------e-----eeeccCcc----ccceeccCCCceeeEeecCcc
Confidence 999965 45666654 8899999998433222 1 24667654 4566887633 88999999
Q ss_pred cEEEEECCC
Q 000054 2535 SVKLIQLED 2543 (2548)
Q Consensus 2535 tIrIWDL~s 2543 (2548)
+|.--.+++
T Consensus 333 tv~qh~~kn 341 (839)
T KOG0269|consen 333 TVLQHLFKN 341 (839)
T ss_pred HHHHhhhhc
Confidence 886554443
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-15 Score=191.15 Aligned_cols=232 Identities=17% Similarity=0.271 Sum_probs=182.3
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
.-+.|+ ..+.||+|.. ..|++|+..++........ +.+.|+++.|+++|..|++|..+|.|.+||..+
T Consensus 181 nlldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~----------~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~ 248 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVALG-QSVYLWSASSGSVTELCSF----------GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE 248 (484)
T ss_pred hHhhcc-cCCeEEEEec-ceEEEEecCCCceEEeEec----------CCCceEEEEECCCCCEEEEeecCCeEEEEehhh
Confidence 445666 3445666543 4799999998885444322 138899999999999999999999999999987
Q ss_pred CcccccccCccceeccC-CcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000054 2303 GGRSNVRPMESCLCFSS-HAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~g-H~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
.+... .+.+ |...|.++..++..+.+|+ .|+.|.++|++.. ......+.+|...|..+.|+++
T Consensus 249 ~k~~~--------~~~~~h~~rvg~laW~~~~lssGs---r~~~I~~~dvR~~-~~~~~~~~~H~qeVCgLkws~d---- 312 (484)
T KOG0305|consen 249 QKKTR--------TLRGSHASRVGSLAWNSSVLSSGS---RDGKILNHDVRIS-QHVVSTLQGHRQEVCGLKWSPD---- 312 (484)
T ss_pred ccccc--------cccCCcCceeEEEeccCceEEEec---CCCcEEEEEEecc-hhhhhhhhcccceeeeeEECCC----
Confidence 65432 2455 8889988877777777774 9999999999974 2233358899999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEE
Q 000054 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRIS 2461 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLa 2461 (2548)
+.++++|+.|+.+.|||. .....+..+ ..|.++|.+++
T Consensus 313 ---~~~lASGgnDN~~~Iwd~---~~~~p~~~~------------------------------------~~H~aAVKA~a 350 (484)
T KOG0305|consen 313 ---GNQLASGGNDNVVFIWDG---LSPEPKFTF------------------------------------TEHTAAVKALA 350 (484)
T ss_pred ---CCeeccCCCccceEeccC---CCccccEEE------------------------------------eccceeeeEee
Confidence 789999999999999994 233444443 67999999999
Q ss_pred EeC-CCCEEEEEeC--CCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEE--ECCC
Q 000054 2462 TVP-NTSLFLTGSK--DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSC--GGDG 2534 (2548)
Q Consensus 2462 fSP-dG~~LaSGS~--DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSG--S~DG 2534 (2548)
|+| ...+||+|+. |+.|++||..+|+.+..+. .| +.|.++.|++.. |+++ -.++
T Consensus 351 wcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-------------tg------sQVcsL~Wsk~~kEi~sthG~s~n 411 (484)
T KOG0305|consen 351 WCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-------------TG------SQVCSLIWSKKYKELLSTHGYSEN 411 (484)
T ss_pred eCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-------------cC------CceeeEEEcCCCCEEEEecCCCCC
Confidence 999 5678999854 9999999999999998661 11 347889999998 6643 4577
Q ss_pred cEEEEECCC
Q 000054 2535 SVKLIQLED 2543 (2548)
Q Consensus 2535 tIrIWDL~s 2543 (2548)
.|.||+.++
T Consensus 412 ~i~lw~~ps 420 (484)
T KOG0305|consen 412 QITLWKYPS 420 (484)
T ss_pred cEEEEeccc
Confidence 899999976
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-15 Score=181.41 Aligned_cols=205 Identities=17% Similarity=0.269 Sum_probs=156.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc--eeEEEec----------cCCCC---CCCCCCCCCeEEEEEccCCCEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK--ATATYGV----------LPAAN---VPPPYALASISALQFDHYGHRF 2286 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~--~l~t~~~----------l~ghs---~~~~~H~~~VtsVaFSPdG~~L 2286 (2548)
|-+++..++|..+++|+.|.++.||+..+.. .+..... ..+.. ....+|++.|.+|.|++ ...+
T Consensus 196 V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~ 274 (423)
T KOG0313|consen 196 VDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVI 274 (423)
T ss_pred eeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCce
Confidence 5788888999999999999999999933211 0000000 00000 12457899999999998 6679
Q ss_pred EEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCc-ceeee
Q 000054 2287 ASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS-RASIT 2363 (2548)
Q Consensus 2287 aSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~-v~sl~ 2363 (2548)
++++.|.+|+.||+++++.... +.+. ..+. .+++..++|++|+ .|..+++||.+++.+.. .+.+.
T Consensus 275 yS~SwDHTIk~WDletg~~~~~--------~~~~-ksl~~i~~~~~~~Ll~~gs---sdr~irl~DPR~~~gs~v~~s~~ 342 (423)
T KOG0313|consen 275 YSVSWDHTIKVWDLETGGLKST--------LTTN-KSLNCISYSPLSKLLASGS---SDRHIRLWDPRTGDGSVVSQSLI 342 (423)
T ss_pred EeecccceEEEEEeecccceee--------eecC-cceeEeecccccceeeecC---CCCceeecCCCCCCCceeEEeee
Confidence 9999999999999999875432 1111 1222 3678888999985 89999999999876664 57889
Q ss_pred ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCC
Q 000054 2364 CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQN 2443 (2548)
Q Consensus 2364 gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~s 2443 (2548)
+|...|.++.|+|.+ ..+|++|+.||++++||+|. +...+..+
T Consensus 343 gH~nwVssvkwsp~~------~~~~~S~S~D~t~klWDvRS--~k~plydI----------------------------- 385 (423)
T KOG0313|consen 343 GHKNWVSSVKWSPTN------EFQLVSGSYDNTVKLWDVRS--TKAPLYDI----------------------------- 385 (423)
T ss_pred cchhhhhheecCCCC------ceEEEEEecCCeEEEEEecc--CCCcceee-----------------------------
Confidence 999999999999996 78999999999999999873 11233333
Q ss_pred ceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 000054 2444 GMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2444 v~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
.+|...|.++.|. ++.++++||.|.+|+|+.-.
T Consensus 386 -------~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 386 -------AGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred -------ccCCceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 6799999999997 56799999999999998643
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-15 Score=190.12 Aligned_cols=240 Identities=18% Similarity=0.265 Sum_probs=190.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc---CCCEEEEEeCCCcEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH---YGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP---dG~~LaSGS~DGtVrVW 2298 (2548)
+++++.+|+|++||+|..-|+++||++...+.....+. |...|.|+.|+. ..++||+|+.|.-|.|+
T Consensus 462 ~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eA----------HesEilcLeyS~p~~~~kLLASasrdRlIHV~ 531 (1080)
T KOG1408|consen 462 FRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEA----------HESEILCLEYSFPVLTNKLLASASRDRLIHVY 531 (1080)
T ss_pred eEEEEECCCcceecccCccCceEEEEehhhhhhhheec----------ccceeEEEeecCchhhhHhhhhccCCceEEEE
Confidence 58888889999999999999999999988776666543 568999999985 36789999999999999
Q ss_pred EcCCCcccccccCccceeccCCcccEEE--EcCCC--CEEEEEeccCCCCeEEEEECCCCCCCcceeeec----cCCCeE
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSG--SVIAAAGHSSNGINVVVWDTLAPPTSSRASITC----HEGGAR 2370 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdG--slLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g----Hs~~Vt 2370 (2548)
|+... +...+++.+|...|++ |-.+| ...+++| .|+.|. ++.....+.-.....+ ....+.
T Consensus 532 Dv~rn-------y~l~qtld~HSssITsvKFa~~gln~~MiscG---ADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlY 600 (1080)
T KOG1408|consen 532 DVKRN-------YDLVQTLDGHSSSITSVKFACNGLNRKMISCG---ADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLY 600 (1080)
T ss_pred ecccc-------cchhhhhcccccceeEEEEeecCCceEEEecc---Cchhhh-eehhccccCceeccccccccccceEE
Confidence 99743 2345678899998885 43344 4566766 677665 3443211111111111 234678
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcc
Q 000054 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP 2450 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~ 2450 (2548)
.+++.|. ..++++++.|+.|+||| +.+|+..+.++. .
T Consensus 601 Dm~Vdp~-------~k~v~t~cQDrnirif~---i~sgKq~k~FKg---------------------------------s 637 (1080)
T KOG1408|consen 601 DMAVDPT-------SKLVVTVCQDRNIRIFD---IESGKQVKSFKG---------------------------------S 637 (1080)
T ss_pred EeeeCCC-------cceEEEEecccceEEEe---ccccceeeeecc---------------------------------c
Confidence 8999888 78999999999999999 778888888721 1
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EE
Q 000054 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FL 2528 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--La 2528 (2548)
.+|++....+..+|.|.|++|.+.|.++.++|..+|+++.+. .||+. .|+.+.|.+|- |+
T Consensus 638 ~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m--------------~GHsE----~VTG~kF~nDCkHlI 699 (1080)
T KOG1408|consen 638 RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM--------------TGHSE----AVTGVKFLNDCKHLI 699 (1080)
T ss_pred ccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh--------------cCcch----heeeeeecccchhhe
Confidence 568888999999999999999999999999999999999866 68874 45777999998 99
Q ss_pred EEECCCcEEEEECCC
Q 000054 2529 SCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2529 SGS~DGtIrIWDL~s 2543 (2548)
+.+.||.|.||.++.
T Consensus 700 SvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 700 SVSGDGCIFVWKLPL 714 (1080)
T ss_pred eecCCceEEEEECch
Confidence 999999999999974
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.8e-16 Score=186.68 Aligned_cols=225 Identities=20% Similarity=0.338 Sum_probs=172.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.|++-+|.|.+|+.|+..|.+++|.+.+|..+..+.. |...|+++.|+-||.+|+||+.||.|.+|++.
T Consensus 84 v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~a----------HYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSA----------HYQSITCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred eeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHh----------hccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 68899999999999999999999999999998877633 77999999999999999999999999999974
Q ss_pred CCc-ccccccCccceeccCCcccEEE--E--cCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEcc
Q 000054 2302 VGG-RSNVRPMESCLCFSSHAMDVSY--I--TSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2302 tgk-~i~i~p~~s~~t~~gH~~~V~a--f--SpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
.-- ........+...+..|.-.|+. + .+-...++|++ .|.++++||+.. +..+.++. -...+.+++..|
T Consensus 154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS---~D~t~k~wdlS~--g~LLlti~-fp~si~av~lDp 227 (476)
T KOG0646|consen 154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS---EDRTIKLWDLSL--GVLLLTIT-FPSSIKAVALDP 227 (476)
T ss_pred eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec---CCceEEEEEecc--ceeeEEEe-cCCcceeEEEcc
Confidence 321 0011133455678999998885 2 33345788875 999999999976 45555553 467899999999
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCC-
Q 000054 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG- 2455 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~- 2455 (2548)
. ...+..|+.+|.|.+.++-.... +..... .-..+-...-...+.||.+
T Consensus 228 a-------e~~~yiGt~~G~I~~~~~~~~~~-~~~~v~----------------------~k~~~~~~t~~~~~~Gh~~~ 277 (476)
T KOG0646|consen 228 A-------ERVVYIGTEEGKIFQNLLFKLSG-QSAGVN----------------------QKGRHEENTQINVLVGHENE 277 (476)
T ss_pred c-------ccEEEecCCcceEEeeehhcCCc-cccccc----------------------ccccccccceeeeeccccCC
Confidence 9 68999999999999999643221 100000 0001111122334578988
Q ss_pred -CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2456 -SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2456 -~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
.|+|++.+-||.+|++|+.||+|+|||+.+.++++++
T Consensus 278 ~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl 315 (476)
T KOG0646|consen 278 SAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL 315 (476)
T ss_pred cceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence 9999999999999999999999999999999998877
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-15 Score=195.41 Aligned_cols=239 Identities=13% Similarity=0.080 Sum_probs=169.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCce-----------------------eEEEe-------------------c
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKA-----------------------TATYG-------------------V 2259 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~-----------------------l~t~~-------------------~ 2259 (2548)
|+++.|++||+|||+||+||.|+||.+...+. ...-. .
T Consensus 270 Iw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~s~~~~ 349 (712)
T KOG0283|consen 270 IWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQSPCVL 349 (712)
T ss_pred EEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccCCcccc
Confidence 79999999999999999999999999765100 00000 0
Q ss_pred cCCC-------C-CCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcC
Q 000054 2260 LPAA-------N-VPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS 2329 (2548)
Q Consensus 2260 l~gh-------s-~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp 2329 (2548)
++.. + ....+|.+.|.++.|+.+ ++|++++.|++||+|++....++. .-.|.+-|+| |+|
T Consensus 350 ~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~---------~F~HndfVTcVaFnP 419 (712)
T KOG0283|consen 350 LPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLK---------VFSHNDFVTCVAFNP 419 (712)
T ss_pred CCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceee---------EEecCCeeEEEEecc
Confidence 0000 0 024679999999999965 569999999999999999776553 3368888886 777
Q ss_pred -CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCcccc-
Q 000054 2330 -SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIAT- 2407 (2548)
Q Consensus 2330 -dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~T- 2407 (2548)
|.++|++|+ -|+.|+||++.. ..+.....-..-|++++|.|+ |+..+.|+.+|.+++|+.+.++-
T Consensus 420 vDDryFiSGS---LD~KvRiWsI~d---~~Vv~W~Dl~~lITAvcy~Pd-------Gk~avIGt~~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 420 VDDRYFISGS---LDGKVRLWSISD---KKVVDWNDLRDLITAVCYSPD-------GKGAVIGTFNGYCRFYDTEGLKLV 486 (712)
T ss_pred cCCCcEeecc---cccceEEeecCc---CeeEeehhhhhhheeEEeccC-------CceEEEEEeccEEEEEEccCCeEE
Confidence 778999984 999999999964 333344444589999999999 88999999999999999753211
Q ss_pred -CceeeeecCCCCCCCcccccccc---CCCCCCccCCCCCceEEEc--------ccCCC--CCEEEEEEeCCCCEEEEEe
Q 000054 2408 -GKTKKHKHSDRGGSSINTCAHAD---AQTGSGSKPGDQNGMLWYI--------PKAHL--GSVTRISTVPNTSLFLTGS 2473 (2548)
Q Consensus 2408 -Gk~l~tl~~~~~~s~~~~~~vaf---SpdGk~v~s~D~sv~Iwdi--------~~gH~--~~VtsLafSPdG~~LaSGS 2473 (2548)
...+........... .++.+.+ .++..+|.+.|..|+|+|. ++|+. ..-....|+.||+++++|+
T Consensus 487 ~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS 565 (712)
T ss_pred EeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee
Confidence 111111101111111 2333333 3443448889999999996 34432 2345677999999999999
Q ss_pred CCCcEEEEECC
Q 000054 2474 KDGDVKLWDAK 2484 (2548)
Q Consensus 2474 ~DGtIrIWDl~ 2484 (2548)
+|..|+||+..
T Consensus 566 eDs~VYiW~~~ 576 (712)
T KOG0283|consen 566 EDSWVYIWKND 576 (712)
T ss_pred cCceEEEEeCC
Confidence 99999999973
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-15 Score=178.33 Aligned_cols=204 Identities=19% Similarity=0.295 Sum_probs=155.6
Q ss_pred CCCEEEEEECCCeEEEEEcCCCc-------eeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEEcC
Q 000054 2230 LRPFFLVGSSNTHIYLWEFGKDK-------ATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2230 dG~~LASGS~DGsVrLWDl~tg~-------~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DGtVrVWDl~ 2301 (2548)
+..+.++-+..|.|+||++...- ......... --+...+|.+.=+.++|+|- ...++||..-+.|++|...
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~-Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~ 242 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFR-PLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPS 242 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccC-ceEEecccCccceeeecccccccccccCccccceEeeeec
Confidence 45677778999999999986311 011100000 00124557788899999993 3348899999999999998
Q ss_pred CCcccccccCccceeccCCcccEE--EEcCCC-CEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVS--YITSSG-SVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~--afSpdG-slLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
+|.-.. ....+.+|...|- +|+|.. ..|++|+ -||+|+|||+|.++.+.....+.|.+.|+.|.|+..
T Consensus 243 ~g~W~v-----d~~Pf~gH~~SVEDLqWSptE~~vfaScS---~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~- 313 (440)
T KOG0302|consen 243 TGSWKV-----DQRPFTGHTKSVEDLQWSPTEDGVFASCS---CDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRR- 313 (440)
T ss_pred cCceee-----cCccccccccchhhhccCCccCceEEeee---cCceEEEEEecCCCccceeEeeccCCceeeEEccCC-
Confidence 764211 1123677888875 588865 4667764 899999999998766666666899999999999988
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEE
Q 000054 2379 LGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVT 2458 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vt 2458 (2548)
.++|++|+.||+++|||+|+.+.++.+.++ +-|..+|+
T Consensus 314 ------~~lLasG~DdGt~~iwDLR~~~~~~pVA~f------------------------------------k~Hk~pIt 351 (440)
T KOG0302|consen 314 ------EPLLASGGDDGTLSIWDLRQFKSGQPVATF------------------------------------KYHKAPIT 351 (440)
T ss_pred ------cceeeecCCCceEEEEEhhhccCCCcceeE------------------------------------EeccCCee
Confidence 459999999999999999998888777776 77999999
Q ss_pred EEEEeCC-CCEEEEEeCCCcEEEEECCC
Q 000054 2459 RISTVPN-TSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2459 sLafSPd-G~~LaSGS~DGtIrIWDl~T 2485 (2548)
+|.|+|. ...|+++|.|..|.+||+..
T Consensus 352 sieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 352 SIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred EEEeccccCceEEeccCCCcEEEEEeec
Confidence 9999995 46788888999999999863
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.5e-14 Score=169.20 Aligned_cols=256 Identities=13% Similarity=0.101 Sum_probs=178.4
Q ss_pred CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEE-EEEeCCCcEEEEEcCCCccccccc
Q 000054 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTWQLEVGGRSNVRP 2310 (2548)
Q Consensus 2232 ~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~L-aSGS~DGtVrVWDl~tgk~i~i~p 2310 (2548)
..+++++.|+.|++||..+++.+..+.. + ..+.+++|+|+++.+ ++++.|+.|++||..+++....
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~----------~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-- 68 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPV----------G-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT-- 68 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEEC----------C-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe--
Confidence 5688999999999999999887777642 1 346789999999876 5677899999999987753221
Q ss_pred CccceeccCC-cccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEE
Q 000054 2311 MESCLCFSSH-AMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIV 2389 (2548)
Q Consensus 2311 ~~s~~t~~gH-~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLV 2389 (2548)
+..+ ......++|+++.+++++ ..|+.|++||+.. .+.+..+.. ...+.+++|+|+ +.+++
T Consensus 69 ------~~~~~~~~~~~~~~~g~~l~~~~--~~~~~l~~~d~~~--~~~~~~~~~-~~~~~~~~~~~d-------g~~l~ 130 (300)
T TIGR03866 69 ------LPSGPDPELFALHPNGKILYIAN--EDDNLVTVIDIET--RKVLAEIPV-GVEPEGMAVSPD-------GKIVV 130 (300)
T ss_pred ------ccCCCCccEEEECCCCCEEEEEc--CCCCeEEEEECCC--CeEEeEeeC-CCCcceEEECCC-------CCEEE
Confidence 1112 223345899999776654 3689999999975 445555542 334688999998 77888
Q ss_pred EEeCCC-cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCc--c-CCCCCceEEEcccCC------------
Q 000054 2390 TGGKGG-DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGS--K-PGDQNGMLWYIPKAH------------ 2453 (2548)
Q Consensus 2390 SGS~DG-tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v--~-s~D~sv~Iwdi~~gH------------ 2453 (2548)
+++.++ .+.+||. .+++....... . .....+.++++|..+ . ..++.+++|+...+.
T Consensus 131 ~~~~~~~~~~~~d~---~~~~~~~~~~~---~--~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~ 202 (300)
T TIGR03866 131 NTSETTNMAHFIDT---KTYEIVDNVLV---D--QRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGV 202 (300)
T ss_pred EEecCCCeEEEEeC---CCCeEEEEEEc---C--CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccccc
Confidence 888765 5677894 44555443211 1 112456789998863 2 347788999864321
Q ss_pred -CC--CEEEEEEeCCCCEEEEE-eCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--E
Q 000054 2454 -LG--SVTRISTVPNTSLFLTG-SKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--F 2527 (2548)
Q Consensus 2454 -~~--~VtsLafSPdG~~LaSG-S~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--L 2527 (2548)
.. ....++|+|++++++.+ +.++.|.+||+++++.+..+. .++ .+.+++|+|+| |
T Consensus 203 ~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-------------~~~------~~~~~~~~~~g~~l 263 (300)
T TIGR03866 203 HPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-------------VGQ------RVWQLAFTPDEKYL 263 (300)
T ss_pred ccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-------------eCC------CcceEEECCCCCEE
Confidence 01 22468899999986554 557789999999988776441 111 25677999999 6
Q ss_pred EEE-ECCCcEEEEECCCCc
Q 000054 2528 LSC-GGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2528 aSG-S~DGtIrIWDL~sg~ 2545 (2548)
+++ +.+|+|++||+.++.
T Consensus 264 ~~~~~~~~~i~v~d~~~~~ 282 (300)
T TIGR03866 264 LTTNGVSNDVSVIDVAALK 282 (300)
T ss_pred EEEcCCCCeEEEEECCCCc
Confidence 554 569999999999875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-15 Score=184.79 Aligned_cols=210 Identities=18% Similarity=0.245 Sum_probs=158.9
Q ss_pred CCCCeEEEEEccC-CCEEEEEeCCCcEEEEEcCCCcccccc--cCccceeccCCcccEE--EEcCCCC-EEEEEeccCCC
Q 000054 2270 ALASISALQFDHY-GHRFASAALDGTVCTWQLEVGGRSNVR--PMESCLCFSSHAMDVS--YITSSGS-VIAAAGHSSNG 2343 (2548)
Q Consensus 2270 H~~~VtsVaFSPd-G~~LaSGS~DGtVrVWDl~tgk~i~i~--p~~s~~t~~gH~~~V~--afSpdGs-lLATgG~SS~D 2343 (2548)
|.+.|..++..|+ ...+++++..+.|.|||..+-...... ...+...+.+|...-. +|++... .+++++ +|
T Consensus 123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~---~d 199 (422)
T KOG0264|consen 123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS---DD 199 (422)
T ss_pred CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeecc---CC
Confidence 6689999999996 556677788899999998754221111 2223345777776322 4555433 555654 89
Q ss_pred CeEEEEECCCCCC-----CcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCC
Q 000054 2344 INVVVWDTLAPPT-----SSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDR 2418 (2548)
Q Consensus 2344 GtVrIWDl~t~~~-----k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~ 2418 (2548)
++|++||+..... .+...+.+|++.|..++|++.+ ..++++++.|+.+.|||+|. .+.+.....
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h------~~lF~sv~dd~~L~iwD~R~-~~~~~~~~~---- 268 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLH------EDLFGSVGDDGKLMIWDTRS-NTSKPSHSV---- 268 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccc------hhhheeecCCCeEEEEEcCC-CCCCCcccc----
Confidence 9999999975433 2457788999999999999997 78999999999999999884 222222221
Q ss_pred CCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCC-cEEEEecccc
Q 000054 2419 GGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVP-NTSLFLTGSKDGDVKLWDAKAA-QLVYHWSKLH 2496 (2548)
Q Consensus 2419 ~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSP-dG~~LaSGS~DGtIrIWDl~Tg-ell~tL~~~H 2496 (2548)
.+|.+.|.|++|+| ++.+|||||.|++|++||+++- +++++
T Consensus 269 --------------------------------~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~----- 311 (422)
T KOG0264|consen 269 --------------------------------KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHT----- 311 (422)
T ss_pred --------------------------------cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCcee-----
Confidence 78999999999999 5678999999999999999963 33433
Q ss_pred cccccccCcccCCCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCC
Q 000054 2497 ERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2497 s~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~s 2543 (2548)
+.+|.+ .|.++.|||+. |||+|.|+.+.|||+..
T Consensus 312 ---------~e~H~d----ev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 312 ---------FEGHED----EVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred ---------ccCCCc----ceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 378875 45778999998 89999999999999963
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.3e-15 Score=178.66 Aligned_cols=271 Identities=14% Similarity=0.196 Sum_probs=206.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCC--ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCC-EEEEEeCCCcEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKD--KATATYGVLPAANVPPPYALASISALQFDHYGH-RFASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg--~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~-~LaSGS~DGtVrVW 2298 (2548)
+.++.|||..+.+++++.||+++||.++.. ..+..+.. ...+|.+.+|.|+|. .+++++.-.....|
T Consensus 216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l----------~~fPi~~a~f~p~G~~~i~~s~rrky~ysy 285 (514)
T KOG2055|consen 216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL----------EKFPIQKAEFAPNGHSVIFTSGRRKYLYSY 285 (514)
T ss_pred ceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee----------ccCccceeeecCCCceEEEecccceEEEEe
Confidence 699999999999999999999999998743 33333321 126799999999999 89999999999999
Q ss_pred EcCCCcccccccCccceeccCCcccEE---EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEc
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVS---YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~---afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafs 2375 (2548)
|+.+.+...+.+ ..++..... .+++++++|+.+| ..|.|.+-...+ ++.+.+++ -.+.|..+.|+
T Consensus 286 Dle~ak~~k~~~------~~g~e~~~~e~FeVShd~~fia~~G---~~G~I~lLhakT--~eli~s~K-ieG~v~~~~fs 353 (514)
T KOG2055|consen 286 DLETAKVTKLKP------PYGVEEKSMERFEVSHDSNFIAIAG---NNGHIHLLHAKT--KELITSFK-IEGVVSDFTFS 353 (514)
T ss_pred eccccccccccC------CCCcccchhheeEecCCCCeEEEcc---cCceEEeehhhh--hhhhheee-eccEEeeEEEe
Confidence 999887555443 334443332 3799999999998 889999988876 56677765 46789999999
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEccc--
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIPK-- 2451 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~~-- 2451 (2548)
.+ +..|++.+.+|.|.+||+|+ ..++..+..++ ......++.+++|.+ +++..|-+.||+...
T Consensus 354 Sd-------sk~l~~~~~~GeV~v~nl~~---~~~~~rf~D~G---~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~ 420 (514)
T KOG2055|consen 354 SD-------SKELLASGGTGEVYVWNLRQ---NSCLHRFVDDG---SVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF 420 (514)
T ss_pred cC-------CcEEEEEcCCceEEEEecCC---cceEEEEeecC---ccceeeeeecCCCceEEeccCcceEEEeccchhh
Confidence 77 78888889999999999764 46666653222 223456677889998 455556678887321
Q ss_pred ------------CCCCCEEEEEEeCCCCEEEEEeC--CCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecE
Q 000054 2452 ------------AHLGSVTRISTVPNTSLFLTGSK--DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGV 2517 (2548)
Q Consensus 2452 ------------gH~~~VtsLafSPdG~~LaSGS~--DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~V 2517 (2548)
.-...|++++|+|++++||.+|. +..+|+-.+.+......|+. ....+ .-|
T Consensus 421 ~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~--------------~n~~v-g~v 485 (514)
T KOG2055|consen 421 ASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPT--------------SNTKV-GHV 485 (514)
T ss_pred ccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCC--------------CCCcc-cce
Confidence 23457999999999999998876 67899888887766665531 12222 448
Q ss_pred EEEEEcCCe--EEEEECCCcEEEEECC
Q 000054 2518 TDIQVVSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2518 tsLafSPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
++++|||.| +|.|-.+|.+.+|.+.
T Consensus 486 tc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 486 TCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEEEecCCCceEEeecCCCceeeEeec
Confidence 999999977 8899999999999975
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.5e-15 Score=170.85 Aligned_cols=233 Identities=20% Similarity=0.245 Sum_probs=172.8
Q ss_pred CCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE---EEcCCCCEEEEEeccCCCC
Q 000054 2268 PYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS---YITSSGSVIAAAGHSSNGI 2344 (2548)
Q Consensus 2268 ~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~---afSpdGslLATgG~SS~DG 2344 (2548)
.+|...|.+|+|+.+|.++++|+.|+++++|+++..... ......+|.+.|- +..++..+++++. .|+
T Consensus 17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~------~~~~~~gh~~svdql~w~~~~~d~~atas---~dk 87 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR------KELVYRGHTDSVDQLCWDPKHPDLFATAS---GDK 87 (313)
T ss_pred hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh------hhhcccCCCcchhhheeCCCCCcceEEec---CCc
Confidence 456789999999999999999999999999999866321 1233667776553 4455677888884 899
Q ss_pred eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcc
Q 000054 2345 NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSIN 2424 (2548)
Q Consensus 2345 tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~ 2424 (2548)
+|++||.+. ++++..+.. .++-.-+.|+|+ +.+++.|+.|..|.+.|.|.. +..... .....
T Consensus 88 ~ir~wd~r~--~k~~~~i~~-~~eni~i~wsp~-------g~~~~~~~kdD~it~id~r~~---~~~~~~-----~~~~e 149 (313)
T KOG1407|consen 88 TIRIWDIRS--GKCTARIET-KGENINITWSPD-------GEYIAVGNKDDRITFIDARTY---KIVNEE-----QFKFE 149 (313)
T ss_pred eEEEEEecc--CcEEEEeec-cCcceEEEEcCC-------CCEEEEecCcccEEEEEeccc---ceeehh-----cccce
Confidence 999999997 677777654 344456788998 789999999999999997642 222111 00111
Q ss_pred ccccccCCCCCC--ccCCCCCceEEE--------cccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 000054 2425 TCAHADAQTGSG--SKPGDQNGMLWY--------IPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSK 2494 (2548)
Q Consensus 2425 ~~~vafSpdGk~--v~s~D~sv~Iwd--------i~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~ 2494 (2548)
..-+.++.++.+ +..+.|.+.|.. ..++|...+.|+.|+|+|++||+|+.|..+.+||+..--+++.+
T Consensus 150 ~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i-- 227 (313)
T KOG1407|consen 150 VNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI-- 227 (313)
T ss_pred eeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee--
Confidence 222334444443 455556666654 34689999999999999999999999999999999877666655
Q ss_pred cccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2495 LHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2495 ~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
..+.- +|..+.||-+| ||+||.|..|-|=++++|.
T Consensus 228 ------------sRldw----pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 228 ------------SRLDW----PVRTLSFSHDGRMLASASEDHFIDIAEVETGD 264 (313)
T ss_pred ------------ccccC----ceEEEEeccCcceeeccCccceEEeEecccCC
Confidence 33443 35566999999 9999999999887777763
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-15 Score=186.80 Aligned_cols=275 Identities=17% Similarity=0.234 Sum_probs=182.6
Q ss_pred CCEEEEEECCCeEEEEEcCCCcee---EEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccc
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKAT---ATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSN 2307 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l---~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~ 2307 (2548)
...|+.+..||.|.++|....... ..+. ....|.+.|.++.|-|....|++++.|.++++||+++++...
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk-------~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G 136 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLK-------KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG 136 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhc-------ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec
Confidence 457889999999999997653221 1122 345578999999999988899999999999999999876543
Q ss_pred cccCccceeccCCcccEE--EEcCC-CCEEEEEeccCCCCeEEEEECCCCCCC-------------------------cc
Q 000054 2308 VRPMESCLCFSSHAMDVS--YITSS-GSVIAAAGHSSNGINVVVWDTLAPPTS-------------------------SR 2359 (2548)
Q Consensus 2308 i~p~~s~~t~~gH~~~V~--afSpd-GslLATgG~SS~DGtVrIWDl~t~~~k-------------------------~v 2359 (2548)
.. .+.||...|- ||.+. ...|++|| .||.|.|||++..... .+
T Consensus 137 ~~------~~~GH~~SvkS~cf~~~n~~vF~tGg---RDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~ 207 (720)
T KOG0321|consen 137 GR------LNLGHTGSVKSECFMPTNPAVFCTGG---RDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI 207 (720)
T ss_pred ce------eecccccccchhhhccCCCcceeecc---CCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence 21 3678888775 46664 46788887 9999999998742200 01
Q ss_pred eeeeccCCCeEE---EEEccCCCCCCCCCCEEEEEeC-CCcEEEEeCCccccCceeeeecCCC--CCC--CccccccccC
Q 000054 2360 ASITCHEGGARS---ISVFDNDLGSGSVSPLIVTGGK-GGDVGIHDFRYIATGKTKKHKHSDR--GGS--SINTCAHADA 2431 (2548)
Q Consensus 2360 ~sl~gHs~~VtS---LafsP~dlg~gs~g~lLVSGS~-DGtVrLWDLR~l~TGk~l~tl~~~~--~~s--~~~~~~vafS 2431 (2548)
..-..|...|.+ +.+.-+ ...||++|. |+.|+|||+|...+.-.......+. .+. ......+...
T Consensus 208 ~k~kA~s~ti~ssvTvv~fkD-------e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lD 280 (720)
T KOG0321|consen 208 RKWKAASNTIFSSVTVVLFKD-------ESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILD 280 (720)
T ss_pred cccccccCceeeeeEEEEEec-------cceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEec
Confidence 112234444444 444444 358888887 9999999998532211111100000 111 1112222333
Q ss_pred CCCCC--ccCCCCCceEEEccc----------CCCC-CE-EEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccccc
Q 000054 2432 QTGSG--SKPGDQNGMLWYIPK----------AHLG-SV-TRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHE 2497 (2548)
Q Consensus 2432 pdGk~--v~s~D~sv~Iwdi~~----------gH~~-~V-tsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs 2497 (2548)
..|.+ +...|++|+.|++.. +|.. .+ ..-..+|++.++++|+.|....+|.+.+-+.--.+
T Consensus 281 ssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~----- 355 (720)
T KOG0321|consen 281 SSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL----- 355 (720)
T ss_pred CCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhh-----
Confidence 33454 666799999999643 2211 11 12236899999999999999999999876543322
Q ss_pred ccccccCcccCCCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCCCc
Q 000054 2498 RHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2498 ~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+.||.- .|+.++|.|.. ++||++|-++++|++.++.
T Consensus 356 --------l~Ght~----eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 356 --------LLGHTR----EVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred --------hhCcce----EEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 467763 35777888876 9999999999999997764
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.3e-15 Score=180.84 Aligned_cols=245 Identities=18% Similarity=0.258 Sum_probs=189.8
Q ss_pred CEEEEE-ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccccccc
Q 000054 2232 PFFLVG-SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRP 2310 (2548)
Q Consensus 2232 ~~LASG-S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p 2310 (2548)
.+++++ .....+.+|.+........+-..+ +.|.+++-+|+|.+++.|+..|.+.+|.+.+|..+.+
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~P----------g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v-- 118 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLP----------GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV-- 118 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccc----------cceeeeecCCCceEEEeecccCcEEEEEeccccHHHH--
Confidence 455554 344578999998766555433333 7899999999999999999999999999999975543
Q ss_pred CccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECC-------CCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000054 2311 MESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTL-------APPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2311 ~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~-------t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
+.+|-..|++ |+.||.+|++|| .||.|.+|++. +...++++.+..|.-+|+++...+..
T Consensus 119 ------~~aHYQ~ITcL~fs~dgs~iiTgs---kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg--- 186 (476)
T KOG0646|consen 119 ------LSAHYQSITCLKFSDDGSHIITGS---KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGG--- 186 (476)
T ss_pred ------HHhhccceeEEEEeCCCcEEEecC---CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCC---
Confidence 6789999987 899999999997 99999999863 12345788999999999999976652
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEE
Q 000054 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRIS 2461 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLa 2461 (2548)
....++|+|.|.++++|| +..|..+.++ .....+.+++
T Consensus 187 --~~~rl~TaS~D~t~k~wd---lS~g~LLlti-------------------------------------~fp~si~av~ 224 (476)
T KOG0646|consen 187 --TNARLYTASEDRTIKLWD---LSLGVLLLTI-------------------------------------TFPSSIKAVA 224 (476)
T ss_pred --ccceEEEecCCceEEEEE---eccceeeEEE-------------------------------------ecCCcceeEE
Confidence 366999999999999999 5667766664 1345889999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCc--EEEEe-cccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcE
Q 000054 2462 TVPNTSLFLTGSKDGDVKLWDAKAAQ--LVYHW-SKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSV 2536 (2548)
Q Consensus 2462 fSPdG~~LaSGS~DGtIrIWDl~Tge--ll~tL-~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtI 2536 (2548)
.+|-++.++.|+.||.|.+.++..-. ..... +..|...+ -.+.+.||.+. ..|++++++-|| |++|+.||+|
T Consensus 225 lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t-~~~~~~Gh~~~--~~ITcLais~DgtlLlSGd~dg~V 301 (476)
T KOG0646|consen 225 LDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENT-QINVLVGHENE--SAITCLAISTDGTLLLSGDEDGKV 301 (476)
T ss_pred EcccccEEEecCCcceEEeeehhcCCcccccccccccccccc-eeeeeccccCC--cceeEEEEecCccEEEeeCCCCCE
Confidence 99999999999999999998876422 21100 11122222 13446888763 457899999999 8899999999
Q ss_pred EEEECCCCc
Q 000054 2537 KLIQLEDYQ 2545 (2548)
Q Consensus 2537 rIWDL~sg~ 2545 (2548)
.|||+.+.+
T Consensus 302 cvWdi~S~Q 310 (476)
T KOG0646|consen 302 CVWDIYSKQ 310 (476)
T ss_pred EEEecchHH
Confidence 999997754
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.1e-16 Score=174.60 Aligned_cols=210 Identities=21% Similarity=0.296 Sum_probs=166.4
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--E-cC-CCCEEEEEeccCCCC
Q 000054 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--I-TS-SGSVIAAAGHSSNGI 2344 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--f-Sp-dGslLATgG~SS~DG 2344 (2548)
.|.+.|.++...-.|++|+||+.|++|+|+.++.+... ..+.++.||.++|.. | +| .|.+||++. .||
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s-----~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs---YDg 80 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQS-----KLLAELTGHSGPVWKVAWAHPKFGTILASCS---YDG 80 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCc-----eeeeEecCCCCCeeEEeecccccCcEeeEee---cCc
Confidence 46688888888888999999999999999999876431 234568999999873 3 33 789999985 899
Q ss_pred eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcc
Q 000054 2345 NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSIN 2424 (2548)
Q Consensus 2345 tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~ 2424 (2548)
.|.||.-..+..+.......|...|++|+|.|.+ .|-.|++++.||.|.|.+++. .|.....
T Consensus 81 kVIiWke~~g~w~k~~e~~~h~~SVNsV~waphe-----ygl~LacasSDG~vsvl~~~~--~g~w~t~----------- 142 (299)
T KOG1332|consen 81 KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHE-----YGLLLACASSDGKVSVLTYDS--SGGWTTS----------- 142 (299)
T ss_pred eEEEEecCCCchhhhhhhhhhcccceeecccccc-----cceEEEEeeCCCcEEEEEEcC--CCCccch-----------
Confidence 9999998875555677888999999999999996 367999999999999999652 1111000
Q ss_pred ccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCC---C-----------CEEEEEeCCCcEEEEECCCCcEEE
Q 000054 2425 TCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPN---T-----------SLFLTGSKDGDVKLWDAKAAQLVY 2490 (2548)
Q Consensus 2425 ~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPd---G-----------~~LaSGS~DGtIrIWDl~Tgell~ 2490 (2548)
.+..+|.-.|+++.|.|. | +.|++|+.|..|+||+..+++-+.
T Consensus 143 -----------------------ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~ 199 (299)
T KOG1332|consen 143 -----------------------KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKL 199 (299)
T ss_pred -----------------------hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhh
Confidence 123689999999999995 4 569999999999999998874321
Q ss_pred EecccccccccccCcccCCCCceeecEEEEEEcCCe------EEEEECCCcEEEEECCC
Q 000054 2491 HWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG------FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2491 tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG------LaSGS~DGtIrIWDL~s 2543 (2548)
..+|++|.+.|+.+ +|.|.- |||||.||+|.||..+.
T Consensus 200 ------------e~~l~~H~dwVRDV----AwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 200 ------------ERTLEGHKDWVRDV----AWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred ------------hhhhhhcchhhhhh----hhccccCCCceeeEEecCCCcEEEEEecC
Confidence 12368999877554 888865 99999999999998763
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-16 Score=198.68 Aligned_cols=227 Identities=21% Similarity=0.381 Sum_probs=185.3
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
.++..-..++.+++|+.|..+-+|.+..-..+..+. +|...|.++.|+++..+++.|+.||+|++||++.
T Consensus 32 ~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~----------~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 32 GCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLT----------GHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred ceeeeeccceeeccCCCceeeccccccCCchhheee----------ccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 333334577899999999999999988766555543 3669999999999999999999999999999997
Q ss_pred CcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCC
Q 000054 2303 GGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLG 2380 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg 2380 (2548)
++.. .++.+|...+.. |+|-+.+++.| |.|+.+++||.+. ..|.+.+.+|...|.++.|+|+
T Consensus 102 Ak~v--------rtLtgh~~~~~sv~f~P~~~~~a~g---Stdtd~~iwD~Rk--~Gc~~~~~s~~~vv~~l~lsP~--- 165 (825)
T KOG0267|consen 102 AKIV--------RTLTGHLLNITSVDFHPYGEFFASG---STDTDLKIWDIRK--KGCSHTYKSHTRVVDVLRLSPD--- 165 (825)
T ss_pred hhhh--------hhhhccccCcceeeeccceEEeccc---cccccceehhhhc--cCceeeecCCcceeEEEeecCC---
Confidence 7533 247788877763 89999999776 4899999999985 5789999999999999999999
Q ss_pred CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEE
Q 000054 2381 SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRI 2460 (2548)
Q Consensus 2381 ~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsL 2460 (2548)
|.++++|+.|.+++|||+ ..|+.+..+ ..|++.|..+
T Consensus 166 ----Gr~v~~g~ed~tvki~d~---~agk~~~ef------------------------------------~~~e~~v~sl 202 (825)
T KOG0267|consen 166 ----GRWVASGGEDNTVKIWDL---TAGKLSKEF------------------------------------KSHEGKVQSL 202 (825)
T ss_pred ----CceeeccCCcceeeeecc---ccccccccc------------------------------------cccccccccc
Confidence 889999999999999994 456665555 7899999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcE
Q 000054 2461 STVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSV 2536 (2548)
Q Consensus 2461 afSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtI 2536 (2548)
.|+|..-++++||.|++|++||+++.+.+.... .. ...|.+.+|+|+| .+-+|..-++
T Consensus 203 e~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~--------------~~----~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 203 EFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK--------------PE----TDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred ccCchhhhhccCCCCceeeeeccceeEEeeccC--------------Cc----cCCceeeeecCCceeeecCchhhh
Confidence 999999999999999999999999988886442 11 1346677999999 4444433333
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-14 Score=185.70 Aligned_cols=250 Identities=17% Similarity=0.223 Sum_probs=190.2
Q ss_pred CccCCeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCC-ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000054 2215 ATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKD-KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2215 ~tl~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg-~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
.+..|+ +.++|.|+|.++.+++.||.|++|+.... +...++.. +...|.+++.. +.+|++|+.++
T Consensus 11 aht~G~--t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~----------~g~~v~~ia~~--s~~f~~~s~~~ 76 (933)
T KOG1274|consen 11 AHTGGL--TLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI----------SGELVSSIACY--SNHFLTGSEQN 76 (933)
T ss_pred hccCce--EEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc----------cCceeEEEeec--ccceEEeeccc
Confidence 355666 67777899999999999999999997765 33333221 34667777754 56899999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
+|.+|.+..+....+. ..+ .-..++++++.+|+++|.|+ +|-.|++-++.. ......+++|.++|.++.
T Consensus 77 tv~~y~fps~~~~~iL-----~Rf-tlp~r~~~v~g~g~~iaags---dD~~vK~~~~~D--~s~~~~lrgh~apVl~l~ 145 (933)
T KOG1274|consen 77 TVLRYKFPSGEEDTIL-----ARF-TLPIRDLAVSGSGKMIAAGS---DDTAVKLLNLDD--SSQEKVLRGHDAPVLQLS 145 (933)
T ss_pred eEEEeeCCCCCcccee-----eee-eccceEEEEecCCcEEEeec---CceeEEEEeccc--cchheeecccCCceeeee
Confidence 9999999877533221 111 12235567899999999986 999999999876 667889999999999999
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCC
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAH 2453 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH 2453 (2548)
|+|. +.+||+.+-||.|++|| ++++.+..++....... + ...
T Consensus 146 ~~p~-------~~fLAvss~dG~v~iw~---~~~~~~~~tl~~v~k~n--------------------------~--~~~ 187 (933)
T KOG1274|consen 146 YDPK-------GNFLAVSSCDGKVQIWD---LQDGILSKTLTGVDKDN--------------------------E--FIL 187 (933)
T ss_pred EcCC-------CCEEEEEecCceEEEEE---cccchhhhhcccCCccc--------------------------c--ccc
Confidence 9999 78999999999999999 56666655541100000 0 111
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEE
Q 000054 2454 LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCG 2531 (2548)
Q Consensus 2454 ~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS 2531 (2548)
...+..++|+|+|..|+..+.|+.|++|+..+.+....+... -|. +.+.++.|+|+| ||+++
T Consensus 188 s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~------------~~s----s~~~~~~wsPnG~YiAAs~ 251 (933)
T KOG1274|consen 188 SRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK------------LSS----SKFSDLQWSPNGKYIAAST 251 (933)
T ss_pred cceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc------------ccc----cceEEEEEcCCCcEEeeec
Confidence 456778999999888888889999999999999988877311 111 336788999999 99999
Q ss_pred CCCcEEEEECCC
Q 000054 2532 GDGSVKLIQLED 2543 (2548)
Q Consensus 2532 ~DGtIrIWDL~s 2543 (2548)
.||.|-|||+++
T Consensus 252 ~~g~I~vWnv~t 263 (933)
T KOG1274|consen 252 LDGQILVWNVDT 263 (933)
T ss_pred cCCcEEEEeccc
Confidence 999999999985
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-14 Score=180.82 Aligned_cols=300 Identities=13% Similarity=0.134 Sum_probs=216.7
Q ss_pred ccCCCCceEEeccCceeEEEEeccCCCCcEEEeecCCceEEeeccCcccccccchhhhccCCCCCCCCCCCCCCCCCCcc
Q 000054 2068 IPFQAPKEICKRNGELFEALCVNSIDQRQGAIASNRKGIVFFNLEDEIPLHDQLKYIWADADWPQNGWAGSESTPVPTFV 2147 (2548)
Q Consensus 2068 ~~f~~~~~ii~~~~~~I~a~~iN~~n~~~lalAs~rk~~~~~~l~~~~~~~~~~~~lw~~ad~p~n~w~~~~Stp~~ts~ 2147 (2548)
++..+++|+++..+..|+++|++... +++|++=....+ +||+ ++++|-....-.+++
T Consensus 12 ~m~vhrcrf~d~~Ps~I~slA~s~kS-~~lAvsRt~g~I----------------EiwN----~~~~w~~~~vi~g~~-- 68 (691)
T KOG2048|consen 12 KMQVHRCRFVDYKPSEIVSLAYSHKS-NQLAVSRTDGNI----------------EIWN----LSNNWFLEPVIHGPE-- 68 (691)
T ss_pred eeEEEEEEEEeeeccceEEEEEeccC-CceeeeccCCcE----------------EEEc----cCCCceeeEEEecCC--
Confidence 34568999999999999999998875 445554442333 7887 366666444322211
Q ss_pred CCCCCCCCCCCccccccCccccccCCCCCCCcccCCccccCCCCccCCccccccccccCCccccCCCCccCCeEEEEEEE
Q 000054 2148 SPGVGLGSNKGAHLGLGGATIGVGSLARPGRDLTGGLAFGIPGYAGIGASALGWETQDDFEDYVDPPATVENISTRAFSS 2227 (2548)
Q Consensus 2148 SP~vg~~S~rGs~l~lggasiG~~ssa~p~~~l~G~~s~gi~G~~g~gaS~i~W~~~ed~e~~v~p~~tl~gV~V~~Vsf 2227 (2548)
... +-.++|
T Consensus 69 ------------------------------------------------------------------drs-----IE~L~W 77 (691)
T KOG2048|consen 69 ------------------------------------------------------------------DRS-----IESLAW 77 (691)
T ss_pred ------------------------------------------------------------------CCc-----eeeEEE
Confidence 001 355666
Q ss_pred cCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccc
Q 000054 2228 HPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSN 2307 (2548)
Q Consensus 2228 SPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~ 2307 (2548)
. ++..|++.+.+|.|.-||+.+++....+... .+.|++++.+|.+..++.|+.||.+..++...+...
T Consensus 78 ~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~----------gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~- 145 (691)
T KOG2048|consen 78 A-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSN----------GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKIT- 145 (691)
T ss_pred c-cCCeEEeecCCceEEEEecccCceeEEecCC----------CcceeEEEeCCccceEEeecCCceEEEEecCCceEE-
Confidence 6 5567889999999999999999988877542 378999999999999999999997777777665422
Q ss_pred cccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee------ccCCCeEEEEEccCCC
Q 000054 2308 VRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT------CHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2308 i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~------gHs~~VtSLafsP~dl 2379 (2548)
....+....++|.+ |++++..+++|+ .||.|++||...+..-.+.+++ +..--|++|.|..++
T Consensus 146 -----~~r~l~rq~sRvLslsw~~~~~~i~~Gs---~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~- 216 (691)
T KOG2048|consen 146 -----YKRSLMRQKSRVLSLSWNPTGTKIAGGS---IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS- 216 (691)
T ss_pred -----EEeecccccceEEEEEecCCccEEEecc---cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-
Confidence 22335566677775 788888899875 8999999999863222222221 123458899988664
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR 2459 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts 2459 (2548)
.|++|.+-|+|.+|| ...|..++.+ ..|.+.|.+
T Consensus 217 -------tI~sgDS~G~V~FWd---~~~gTLiqS~------------------------------------~~h~adVl~ 250 (691)
T KOG2048|consen 217 -------TIASGDSAGTVTFWD---SIFGTLIQSH------------------------------------SCHDADVLA 250 (691)
T ss_pred -------cEEEecCCceEEEEc---ccCcchhhhh------------------------------------hhhhcceeE
Confidence 999999999999999 5556555554 779999999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEECCCcEEEE
Q 000054 2460 ISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGGDGSVKLI 2539 (2548)
Q Consensus 2460 LafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS~DGtIrIW 2539 (2548)
++.++++.+++++|.|+.|..+...++....... . . ...|...| .+++..++-+++||.|+++.+-
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~------~--~--r~~h~hdv----rs~av~~~~l~sgG~d~~l~i~ 316 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVIN------S--R--RDLHAHDV----RSMAVIENALISGGRDFTLAIC 316 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCccceeee------c--c--ccCCcccc----eeeeeecceEEecceeeEEEEc
Confidence 9999999999999999999999887654321110 0 0 24455444 4447777779999999998876
Q ss_pred ECC
Q 000054 2540 QLE 2542 (2548)
Q Consensus 2540 DL~ 2542 (2548)
...
T Consensus 317 ~s~ 319 (691)
T KOG2048|consen 317 SSR 319 (691)
T ss_pred ccc
Confidence 554
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.4e-15 Score=181.00 Aligned_cols=284 Identities=19% Similarity=0.250 Sum_probs=195.5
Q ss_pred cCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCE-EEEEeCCC
Q 000054 2217 VENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHR-FASAALDG 2293 (2548)
Q Consensus 2217 l~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~-LaSGS~DG 2293 (2548)
+.+|+ +++++.+|.|.+|++|+.||+|+||.+.+|+++.++.. .+.|.+|+|+|.++. ++.++.++
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-----------d~~I~~vaw~P~~~~~vLAvA~~~ 464 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-----------DSEIRSVAWNPLSDLCVLAVAVGE 464 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-----------cceeEEEEecCCCCceeEEEEecC
Confidence 34444 79999999999999999999999999999999998753 267999999996542 33333444
Q ss_pred cEEEEEcCCCccccc---------ccCccc--------------------eeccCCcccEE--EEcCCCCEEEEEeccCC
Q 000054 2294 TVCTWQLEVGGRSNV---------RPMESC--------------------LCFSSHAMDVS--YITSSGSVIAAAGHSSN 2342 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i---------~p~~s~--------------------~t~~gH~~~V~--afSpdGslLATgG~SS~ 2342 (2548)
.+.+-+..-|..+.. .+.... ...-.|...|. .|+..|.+|++....+.
T Consensus 465 ~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~ 544 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSG 544 (733)
T ss_pred ceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCC
Confidence 455555433311110 000000 01112333333 26778999999864445
Q ss_pred CCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCC
Q 000054 2343 GINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSS 2422 (2548)
Q Consensus 2343 DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~ 2422 (2548)
...|.|.++.. ......|+.-.+.|.++.|+|. ..+|++++ -..|+|||+ ..+..++.+ ....
T Consensus 545 ~~~VliHQLSK--~~sQ~PF~kskG~vq~v~FHPs-------~p~lfVaT-q~~vRiYdL---~kqelvKkL----~tg~ 607 (733)
T KOG0650|consen 545 NKSVLIHQLSK--RKSQSPFRKSKGLVQRVKFHPS-------KPYLFVAT-QRSVRIYDL---SKQELVKKL----LTGS 607 (733)
T ss_pred cceEEEEeccc--ccccCchhhcCCceeEEEecCC-------CceEEEEe-ccceEEEeh---hHHHHHHHH----hcCC
Confidence 67899999875 3334455556788999999999 56666665 468999995 333433333 2233
Q ss_pred ccccccccCCCCCC--ccCCCCCceEEEc---------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC------C
Q 000054 2423 INTCAHADAQTGSG--SKPGDQNGMLWYI---------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK------A 2485 (2548)
Q Consensus 2423 ~~~~~vafSpdGk~--v~s~D~sv~Iwdi---------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~------T 2485 (2548)
.....++++|.|.- +++.++.+..+|+ +.-|...|++|+||+.-.+|++|+.||++.|+.-. .
T Consensus 608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~q 687 (733)
T KOG0650|consen 608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQ 687 (733)
T ss_pred eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhc
Confidence 44566788887665 6666666666663 45699999999999999999999999999998533 2
Q ss_pred CcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEE
Q 000054 2486 AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLI 2539 (2548)
Q Consensus 2486 gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIW 2539 (2548)
+-++.-+ ..++||...-.-+|.++.|+|.. |.|+|+||+|++|
T Consensus 688 npliVPl-----------K~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 688 NPLIVPL-----------KRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCceEee-----------eeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 2223222 12588876544567888999999 9999999999998
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-16 Score=198.10 Aligned_cols=223 Identities=19% Similarity=0.327 Sum_probs=181.5
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccccc
Q 000054 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNV 2308 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i 2308 (2548)
|.+.+++.+..+..+++||.... ..|...|.++..-..++.+++|+.|..+-+|.+.....
T Consensus 2 ~~~~~~m~~~~~t~Lr~~~~~~~----------------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~--- 62 (825)
T KOG0267|consen 2 PGMEFLMKTKRATKLRVWDTREF----------------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA--- 62 (825)
T ss_pred Ccccccceeeeeeccccccchhh----------------hhhhhhhceeeeeccceeeccCCCceeeccccccCCch---
Confidence 45556667777777888885432 12557788888766788999999999999998864321
Q ss_pred ccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCC
Q 000054 2309 RPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSP 2386 (2548)
Q Consensus 2309 ~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~ 2386 (2548)
...+.+|...|-+ |+++..+|++|. .+|+|++||+.. .+.++++.||...+.+|.|+|- +.
T Consensus 63 -----i~S~~~hespIeSl~f~~~E~Llaags---asgtiK~wDlee--Ak~vrtLtgh~~~~~sv~f~P~-------~~ 125 (825)
T KOG0267|consen 63 -----ITSLTGHESPIESLTFDTSERLLAAGS---ASGTIKVWDLEE--AKIVRTLTGHLLNITSVDFHPY-------GE 125 (825)
T ss_pred -----hheeeccCCcceeeecCcchhhhcccc---cCCceeeeehhh--hhhhhhhhccccCcceeeeccc-------eE
Confidence 2237899998876 777778888874 899999999986 6788999999999999999998 67
Q ss_pred EEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCC
Q 000054 2387 LIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNT 2466 (2548)
Q Consensus 2387 lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG 2466 (2548)
+.++|+.|+.+++||+|. ..|...+ .+|...|..+.|+|+|
T Consensus 126 ~~a~gStdtd~~iwD~Rk---~Gc~~~~------------------------------------~s~~~vv~~l~lsP~G 166 (825)
T KOG0267|consen 126 FFASGSTDTDLKIWDIRK---KGCSHTY------------------------------------KSHTRVVDVLRLSPDG 166 (825)
T ss_pred Eeccccccccceehhhhc---cCceeee------------------------------------cCCcceeEEEeecCCC
Confidence 889999999999999763 2343333 6799999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000054 2467 SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2467 ~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
+++++|++|.+++|||...|+.+.+| .+|.+.+. .+.|+|.. +++||.|++|++||+++.
T Consensus 167 r~v~~g~ed~tvki~d~~agk~~~ef--------------~~~e~~v~----sle~hp~e~Lla~Gs~d~tv~f~dletf 228 (825)
T KOG0267|consen 167 RWVASGGEDNTVKIWDLTAGKLSKEF--------------KSHEGKVQ----SLEFHPLEVLLAPGSSDRTVRFWDLETF 228 (825)
T ss_pred ceeeccCCcceeeeeccccccccccc--------------cccccccc----ccccCchhhhhccCCCCceeeeecccee
Confidence 99999999999999999999998766 56766553 44799988 789999999999999853
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3e-15 Score=173.33 Aligned_cols=244 Identities=16% Similarity=0.212 Sum_probs=179.1
Q ss_pred ccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcC------C--------Cc-eeEEEe----------ccCCCCC---
Q 000054 2216 TVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFG------K--------DK-ATATYG----------VLPAANV--- 2265 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~------t--------g~-~l~t~~----------~l~ghs~--- 2265 (2548)
+..||. +.++.||+.+.++++++.|++..||... . ++ ....-. ...+|.+
T Consensus 185 ~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvP 264 (481)
T KOG0300|consen 185 TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVP 264 (481)
T ss_pred eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeee
Confidence 344444 6999999999999999999999999831 1 00 000000 0011111
Q ss_pred --CCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccC
Q 000054 2266 --PPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSS 2341 (2548)
Q Consensus 2266 --~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS 2341 (2548)
+..+|.+.|.+..|-..|+.+++++.|.+..+||+++|..+. .+.||..... +-.|..++++++ |
T Consensus 265 l~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~--------~LtGHd~ELtHcstHptQrLVvTs---S 333 (481)
T KOG0300|consen 265 LMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVN--------ILTGHDSELTHCSTHPTQRLVVTS---S 333 (481)
T ss_pred eeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceec--------cccCcchhccccccCCcceEEEEe---c
Confidence 345788999999999999999999999999999999997544 3788888775 356777888887 4
Q ss_pred CCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCC
Q 000054 2342 NGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGS 2421 (2548)
Q Consensus 2342 ~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s 2421 (2548)
.|.+.++||.+. .-..+..|+||++.|+++.|.-++ .+++|+.|.+|++||+|++.+. +.++..+
T Consensus 334 rDtTFRLWDFRe-aI~sV~VFQGHtdtVTS~vF~~dd--------~vVSgSDDrTvKvWdLrNMRsp--lATIRtd---- 398 (481)
T KOG0300|consen 334 RDTTFRLWDFRE-AIQSVAVFQGHTDTVTSVVFNTDD--------RVVSGSDDRTVKVWDLRNMRSP--LATIRTD---- 398 (481)
T ss_pred cCceeEeccchh-hcceeeeecccccceeEEEEecCC--------ceeecCCCceEEEeeeccccCc--ceeeecC----
Confidence 999999999984 356788999999999999998875 9999999999999999865432 2222111
Q ss_pred CccccccccCCCCCC--ccCCCCCceEEEc------------ccCCCCCEEEEEEeCCC--CEEEEEeCCCcEEEEECCC
Q 000054 2422 SINTCAHADAQTGSG--SKPGDQNGMLWYI------------PKAHLGSVTRISTVPNT--SLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2422 ~~~~~~vafSpdGk~--v~s~D~sv~Iwdi------------~~gH~~~VtsLafSPdG--~~LaSGS~DGtIrIWDl~T 2485 (2548)
.....++++..+.+ +--.+..++++|+ .++|...|+|++|..+. .-|+++|.|..+.-|.+..
T Consensus 399 -S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 399 -SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred -CccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 11223344444444 3344556788874 35899999999997654 4578999999999999875
Q ss_pred C
Q 000054 2486 A 2486 (2548)
Q Consensus 2486 g 2486 (2548)
.
T Consensus 478 p 478 (481)
T KOG0300|consen 478 P 478 (481)
T ss_pred c
Confidence 3
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-13 Score=175.44 Aligned_cols=271 Identities=16% Similarity=0.234 Sum_probs=189.7
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
|..++|..||+ .+++|+..|.+.+||++..+.....+ ..|.+.|....|-|....+++++.|..+++|-.
T Consensus 247 VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~---------nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vf 317 (910)
T KOG1539|consen 247 VTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTR---------NAHYGSVTGATFLPGEPVLVTAGADNSLKVWVF 317 (910)
T ss_pred eeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeee---------ccccCCcccceecCCCceEeeccCCCceeEEEe
Confidence 68899999987 55678888999999999877665543 235688999999999999999999998888855
Q ss_pred CCCccc----c-----cccC----------------------------------------------------------cc
Q 000054 2301 EVGGRS----N-----VRPM----------------------------------------------------------ES 2313 (2548)
Q Consensus 2301 ~tgk~i----~-----i~p~----------------------------------------------------------~s 2313 (2548)
+++.-. . ..|. ..
T Consensus 318 D~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~ 397 (910)
T KOG1539|consen 318 DSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPP 397 (910)
T ss_pred eCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCc
Confidence 422100 0 0000 00
Q ss_pred cee--------------ccCC-----------------------c------ccEE--EEcCCCCEEEEEeccCCCCeEEE
Q 000054 2314 CLC--------------FSSH-----------------------A------MDVS--YITSSGSVIAAAGHSSNGINVVV 2348 (2548)
Q Consensus 2314 ~~t--------------~~gH-----------------------~------~~V~--afSpdGslLATgG~SS~DGtVrI 2348 (2548)
... +..| . ..+. +.++-|++.+.|. ..|.|.+
T Consensus 398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~---S~G~Id~ 474 (910)
T KOG1539|consen 398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGY---SKGTIDR 474 (910)
T ss_pred ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEec---cCCeEEE
Confidence 000 0001 0 1111 2455566666553 6889999
Q ss_pred EECCCCCCCcceee---eccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccc
Q 000054 2349 WDTLAPPTSSRASI---TCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINT 2425 (2548)
Q Consensus 2349 WDl~t~~~k~v~sl---~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~ 2425 (2548)
|++.+ +-....+ ..|.++|++++...- ++.+++++.+|.+++||+. ....+..+. .....
T Consensus 475 fNmQS--Gi~r~sf~~~~ah~~~V~gla~D~~-------n~~~vsa~~~Gilkfw~f~---~k~l~~~l~-----l~~~~ 537 (910)
T KOG1539|consen 475 FNMQS--GIHRKSFGDSPAHKGEVTGLAVDGT-------NRLLVSAGADGILKFWDFK---KKVLKKSLR-----LGSSI 537 (910)
T ss_pred EEccc--CeeecccccCccccCceeEEEecCC-------CceEEEccCcceEEEEecC---Ccceeeeec-----cCCCc
Confidence 99876 4445555 489999999998766 6799999999999999954 333333331 11112
Q ss_pred cccccCCCCCC--ccCCCCCceEEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccc
Q 000054 2426 CAHADAQTGSG--SKPGDQNGMLWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKL 2495 (2548)
Q Consensus 2426 ~~vafSpdGk~--v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~ 2495 (2548)
..+..+..... ++..+-.+.++|+ +.||.+.|++++|+|||++|++++.|++|++||+.++.++..+-
T Consensus 538 ~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-- 615 (910)
T KOG1539|consen 538 TGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-- 615 (910)
T ss_pred ceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe--
Confidence 22333333222 5566667778874 56899999999999999999999999999999999999998661
Q ss_pred ccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECC-CcEEEEE
Q 000054 2496 HERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGD-GSVKLIQ 2540 (2548)
Q Consensus 2496 Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~D-GtIrIWD 2540 (2548)
+..+++++.|+|+| |||...| .-|.+|.
T Consensus 616 -----------------vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 616 -----------------VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred -----------------cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 22457888999999 8888888 6799996
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5e-14 Score=162.93 Aligned_cols=220 Identities=15% Similarity=0.212 Sum_probs=147.5
Q ss_pred EEEEEEcC-CCCEEEEEECCCeEEEEEcCCCce------eEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCC
Q 000054 2222 TRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKA------TATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDG 2293 (2548)
Q Consensus 2222 V~~VsfSP-dG~~LASGS~DGsVrLWDl~tg~~------l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DG 2293 (2548)
|.++...+ .|+|+++|+.||.|.+||+.+... +..-.+.-+. .-+.+|.-.|.++.|-| |.-.|.+++.|.
T Consensus 46 vNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~-~h~~~Hky~iss~~WyP~DtGmFtssSFDh 124 (397)
T KOG4283|consen 46 VNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAK-QHENGHKYAISSAIWYPIDTGMFTSSSFDH 124 (397)
T ss_pred cceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccc-cCCccceeeeeeeEEeeecCceeecccccc
Confidence 45566556 589999999999999999985431 1111110010 02467888999999999 667788999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEE--EEcC---CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCC
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITS---SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGG 2368 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSp---dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~ 2368 (2548)
+++|||.++.+...... -...|. +++| ..-+||+|. .|-.|++-|+.. +.+-+.+.||.++
T Consensus 125 tlKVWDtnTlQ~a~~F~---------me~~VYshamSp~a~sHcLiA~gt---r~~~VrLCDi~S--Gs~sH~LsGHr~~ 190 (397)
T KOG4283|consen 125 TLKVWDTNTLQEAVDFK---------MEGKVYSHAMSPMAMSHCLIAAGT---RDVQVRLCDIAS--GSFSHTLSGHRDG 190 (397)
T ss_pred eEEEeecccceeeEEee---------cCceeehhhcChhhhcceEEEEec---CCCcEEEEeccC--CcceeeeccccCc
Confidence 99999999876432211 112232 1333 234666664 889999999987 7889999999999
Q ss_pred eEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEE
Q 000054 2369 ARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWY 2448 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwd 2448 (2548)
|.+|.|+|.. .-.|++|+.||.|++||+|. .+ .|...+........ .+..
T Consensus 191 vlaV~Wsp~~------e~vLatgsaDg~irlWDiRr-as-gcf~~lD~hn~k~~----------------------p~~~ 240 (397)
T KOG4283|consen 191 VLAVEWSPSS------EWVLATGSADGAIRLWDIRR-AS-GCFRVLDQHNTKRP----------------------PILK 240 (397)
T ss_pred eEEEEeccCc------eeEEEecCCCceEEEEEeec-cc-ceeEEeecccCccC----------------------cccc
Confidence 9999999994 55899999999999999984 22 23333311111110 0111
Q ss_pred cccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 000054 2449 IPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAA 2486 (2548)
Q Consensus 2449 i~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tg 2486 (2548)
...+|.+.|.+++|..++.++++.+.|..+++|+..+|
T Consensus 241 ~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G 278 (397)
T KOG4283|consen 241 TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESG 278 (397)
T ss_pred ccccccceeeeeeecccchhhhhccCccceEEeecccC
Confidence 12456666666666666666666666666666666544
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=169.65 Aligned_cols=223 Identities=19% Similarity=0.228 Sum_probs=165.0
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCC--EEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGH--RFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~--~LaSGS~DGtVrVWD 2299 (2548)
+.+++ -+|+|+|+|+.|-+|+|||..+......+-. |.+.|+++.|.+.-. .|++|+.||.|.+|+
T Consensus 46 itavA--Vs~~~~aSGssDetI~IYDm~k~~qlg~ll~----------HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 46 ITALA--VSGPYVASGSSDETIHIYDMRKRKQLGILLS----------HAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred eeEEE--ecceeEeccCCCCcEEEEeccchhhhcceec----------cccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 46666 4589999999999999999998777666532 669999999998654 899999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
+.... ....+.+|...|. +++|.|++-++.| .|+.++.||+-.+....+..+. ...+.|.|+|.
T Consensus 114 ~~~W~--------~~~slK~H~~~Vt~lsiHPS~KLALsVg---~D~~lr~WNLV~Gr~a~v~~L~---~~at~v~w~~~ 179 (362)
T KOG0294|consen 114 VGSWE--------LLKSLKAHKGQVTDLSIHPSGKLALSVG---GDQVLRTWNLVRGRVAFVLNLK---NKATLVSWSPQ 179 (362)
T ss_pred cCCeE--------EeeeecccccccceeEecCCCceEEEEc---CCceeeeehhhcCccceeeccC---CcceeeEEcCC
Confidence 87653 3345788888887 4889999999887 8999999999763232333332 33455999988
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEEc-------
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWYI------- 2449 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwdi------- 2449 (2548)
|.+++.++.++ |-+|-+. +......+..+ ....++.|...+.+ ++..+..+.+||.
T Consensus 180 -------Gd~F~v~~~~~-i~i~q~d---~A~v~~~i~~~-----~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~ 243 (362)
T KOG0294|consen 180 -------GDHFVVSGRNK-IDIYQLD---NASVFREIENP-----KRILCATFLDGSELLVGGDNEWISLKDTDSDTPLT 243 (362)
T ss_pred -------CCEEEEEeccE-EEEEecc---cHhHhhhhhcc-----ccceeeeecCCceEEEecCCceEEEeccCCCccce
Confidence 77888877654 7788743 33332222111 11223334444444 7777788888874
Q ss_pred -ccCCCCCEEEEEE--eCCCCEEEEEeCCCcEEEEECCCC
Q 000054 2450 -PKAHLGSVTRIST--VPNTSLFLTGSKDGDVKLWDAKAA 2486 (2548)
Q Consensus 2450 -~~gH~~~VtsLaf--SPdG~~LaSGS~DGtIrIWDl~Tg 2486 (2548)
+.+|...|.++.+ .|++.+|+|+|.||.|+|||++..
T Consensus 244 ~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 244 EFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 5689999999984 567899999999999999999865
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-14 Score=175.04 Aligned_cols=250 Identities=16% Similarity=0.169 Sum_probs=180.2
Q ss_pred EEEEEEcCCCC--EEEEEECCCeEEEEEcCCCce-eEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEE
Q 000054 2222 TRAFSSHPLRP--FFLVGSSNTHIYLWEFGKDKA-TATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~--~LASGS~DGsVrLWDl~tg~~-l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrV 2297 (2548)
+.+++|||..+ ++|+|+.-|.|-+||+.+.+. ...+..+ ..|.+.|.++.|+| +...+++.+.||+|++
T Consensus 189 it~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f-------~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 189 ITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLF-------TPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred eEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEe-------ccCCccccceEecCCChhheeeeccCceeee
Confidence 79999999754 888999999999999963222 1222111 23669999999999 5678999999999999
Q ss_pred EEcCCCcccccccCccceeccCCcccEE--E--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVS--Y--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V~--a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
-|++.+....+ +......+. . ++.+...++.++ .=|...+||++++ +.....+.-|...|.+|+
T Consensus 262 ~D~~~~i~e~v--------~s~~~d~~~fs~~d~~~e~~~vl~~~---~~G~f~~iD~R~~-~s~~~~~~lh~kKI~sv~ 329 (498)
T KOG4328|consen 262 QDFEGNISEEV--------LSLDTDNIWFSSLDFSAESRSVLFGD---NVGNFNVIDLRTD-GSEYENLRLHKKKITSVA 329 (498)
T ss_pred eeecchhhHHH--------hhcCccceeeeeccccCCCccEEEee---cccceEEEEeecC-Cccchhhhhhhcccceee
Confidence 99987642221 111122222 1 555666666665 4469999999985 455667778999999999
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCce-eeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccC
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKT-KKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKA 2452 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~-l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~g 2452 (2548)
++|-+ ..+++|+|.|++++|||+|.+..... +... ..
T Consensus 330 ~NP~~------p~~laT~s~D~T~kIWD~R~l~~K~sp~lst------------------------------------~~ 367 (498)
T KOG4328|consen 330 LNPVC------PWFLATASLDQTAKIWDLRQLRGKASPFLST------------------------------------LP 367 (498)
T ss_pred cCCCC------chheeecccCcceeeeehhhhcCCCCcceec------------------------------------cc
Confidence 99985 77999999999999999987544432 1111 46
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC----CCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--
Q 000054 2453 HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK----AAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-- 2526 (2548)
Q Consensus 2453 H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~----Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-- 2526 (2548)
|...|.+..|+|.+-.|+|.+.|..|+|||.. .-.+..++. |...+ -.|-. ....+|.|+.
T Consensus 368 HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~--Hn~~t------~RwlT-----~fKA~W~P~~~l 434 (498)
T KOG4328|consen 368 HRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP--HNNRT------GRWLT-----PFKAAWDPDYNL 434 (498)
T ss_pred ccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee--ccCcc------ccccc-----chhheeCCCccE
Confidence 99999999999988779999999999999983 334444442 21111 11222 2233799988
Q ss_pred EEEEECCCcEEEEECCCCc
Q 000054 2527 FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2527 LaSGS~DGtIrIWDL~sg~ 2545 (2548)
++.|-.-..|-|+|-.+++
T Consensus 435 i~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 435 IVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred EEEeccCcceeEEcCCCCE
Confidence 7788888889999988776
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.4e-15 Score=196.39 Aligned_cols=244 Identities=15% Similarity=0.301 Sum_probs=181.7
Q ss_pred EEEEEEcCCCCE----EEEEECCCeEEEEEcCC---CceeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCC
Q 000054 2222 TRAFSSHPLRPF----FLVGSSNTHIYLWEFGK---DKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDG 2293 (2548)
Q Consensus 2222 V~~VsfSPdG~~----LASGS~DGsVrLWDl~t---g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DG 2293 (2548)
-..++|.+.|.. +|.|..||.|.+||... +.....+. +...|.+.|..+.|++. ++.||+|+.||
T Consensus 67 F~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la-------~~~~h~G~V~gLDfN~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 67 FNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLA-------TKSKHTGPVLGLDFNPFQGNLLASGADDG 139 (1049)
T ss_pred ceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHh-------hhcccCCceeeeeccccCCceeeccCCCC
Confidence 467788777665 88899999999999875 33322222 22346799999999995 56999999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEEEcCC---CCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCC--C
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSS---GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG--G 2368 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpd---GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~--~ 2368 (2548)
.|.|||+...+ .|+... -......|.+++++ .++|++++ .+|.+.|||++. .+++..+..|.+ .
T Consensus 140 eI~iWDlnn~~----tP~~~~--~~~~~~eI~~lsWNrkvqhILAS~s---~sg~~~iWDlr~--~~pii~ls~~~~~~~ 208 (1049)
T KOG0307|consen 140 EILIWDLNKPE----TPFTPG--SQAPPSEIKCLSWNRKVSHILASGS---PSGRAVIWDLRK--KKPIIKLSDTPGRMH 208 (1049)
T ss_pred cEEEeccCCcC----CCCCCC--CCCCcccceEeccchhhhHHhhccC---CCCCceeccccC--CCcccccccCCCccc
Confidence 99999998643 222111 12234566665554 34677764 789999999986 466666665544 4
Q ss_pred eEEEEEccCCCCCCCCCCEEEEEeCCC---cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCce
Q 000054 2369 ARSISVFDNDLGSGSVSPLIVTGGKGG---DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGM 2445 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVSGS~DG---tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~ 2445 (2548)
+..+.|+|++ ...+++++.|. .|.+||+|+..+ .++.
T Consensus 209 ~S~l~WhP~~------aTql~~As~dd~~PviqlWDlR~ass--P~k~-------------------------------- 248 (1049)
T KOG0307|consen 209 CSVLAWHPDH------ATQLLVASGDDSAPVIQLWDLRFASS--PLKI-------------------------------- 248 (1049)
T ss_pred eeeeeeCCCC------ceeeeeecCCCCCceeEeecccccCC--chhh--------------------------------
Confidence 7899999996 66777776554 799999986322 1122
Q ss_pred EEEcccCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcC
Q 000054 2446 LWYIPKAHLGSVTRISTVPNT-SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVS 2524 (2548)
Q Consensus 2446 Iwdi~~gH~~~VtsLafSPdG-~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSP 2524 (2548)
+++|...|.++.|++.+ ++|+|++.|+.|.+|+.++|+.+.+++ ..+ ..+.++.|.|
T Consensus 249 ----~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p--------------~~~----nW~fdv~w~p 306 (1049)
T KOG0307|consen 249 ----LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP--------------AQG----NWCFDVQWCP 306 (1049)
T ss_pred ----hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC--------------CCC----cceeeeeecC
Confidence 27899999999999965 999999999999999999999999883 122 2357779998
Q ss_pred Ce---EEEEECCCcEEEEECCCCc
Q 000054 2525 RG---FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2525 dG---LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.. ++.++-||.|-|+.+.+..
T Consensus 307 r~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 307 RNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCcchhhhheeccceeeeeeecCC
Confidence 87 8899999999999997653
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=173.02 Aligned_cols=214 Identities=17% Similarity=0.231 Sum_probs=159.2
Q ss_pred CCCCCCCCeEEEEEccCC--CEEEEEeCCCcEEEEEcCCC--------cccccccCccceeccCCcccEE--EEcCCC-C
Q 000054 2266 PPPYALASISALQFDHYG--HRFASAALDGTVCTWQLEVG--------GRSNVRPMESCLCFSSHAMDVS--YITSSG-S 2332 (2548)
Q Consensus 2266 ~~~~H~~~VtsVaFSPdG--~~LaSGS~DGtVrVWDl~tg--------k~i~i~p~~s~~t~~gH~~~V~--afSpdG-s 2332 (2548)
....|.+.|..++-.+.+ .+.++=+..|.|.||++... -........+..++.+|...-. +|||-. -
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 344577888888888754 45555577899999998532 1111233345667778875444 477732 2
Q ss_pred EEEEEeccCCCCeEEEEECCCCCCCc-ceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCcee
Q 000054 2333 VIAAAGHSSNGINVVVWDTLAPPTSS-RASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTK 2411 (2548)
Q Consensus 2333 lLATgG~SS~DGtVrIWDl~t~~~k~-v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l 2411 (2548)
.+++|. .-+.|++|...++..+. ...+.+|+..|-.++|+|.. ..+++||+.||+|+|||+|.-....++
T Consensus 226 ~LlsGD---c~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE------~~vfaScS~DgsIrIWDiRs~~~~~~~ 296 (440)
T KOG0302|consen 226 RLLSGD---CVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTE------DGVFASCSCDGSIRIWDIRSGPKKAAV 296 (440)
T ss_pred ccccCc---cccceEeeeeccCceeecCccccccccchhhhccCCcc------CceEEeeecCceEEEEEecCCCcccee
Confidence 356664 45789999987643332 35667899999999999996 789999999999999998842222332
Q ss_pred eeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC---CcE
Q 000054 2412 KHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA---AQL 2488 (2548)
Q Consensus 2412 ~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~T---gel 2488 (2548)
.+ ++|.+.|+.+.|+.+..+||+|+.||+++|||++. +++
T Consensus 297 ~~-------------------------------------kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~p 339 (440)
T KOG0302|consen 297 ST-------------------------------------KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQP 339 (440)
T ss_pred Ee-------------------------------------eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCc
Confidence 22 67999999999999988999999999999999984 556
Q ss_pred EEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCC
Q 000054 2489 VYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2489 l~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~s 2543 (2548)
+.+| +-|. +.|++|.|+|.. |+++|.|..|.+||+.-
T Consensus 340 VA~f--------------k~Hk----~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 340 VATF--------------KYHK----APITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred ceeE--------------Eecc----CCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 6655 4565 456888999977 89999999999999963
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.4e-14 Score=164.89 Aligned_cols=251 Identities=18% Similarity=0.222 Sum_probs=166.9
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE---EcC-CCCEEEEEeccCCCC
Q 000054 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY---ITS-SGSVIAAAGHSSNGI 2344 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a---fSp-dGslLATgG~SS~DG 2344 (2548)
+|.+-|.++.|++.|+++|+|+.|++|+|||.+.+.. . .........|.+.|.. .+| -|+.+|+++ .|+
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-~---W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS---~Dr 83 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-T---WSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS---YDR 83 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-c---eEEeeeEEecCCcEEEEEecCccccceEEEEe---cCC
Confidence 4678899999999999999999999999999754421 1 1122235667776653 334 589999985 999
Q ss_pred eEEEEECCCCC-------CCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccC---ce---e
Q 000054 2345 NVVVWDTLAPP-------TSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATG---KT---K 2411 (2548)
Q Consensus 2345 tVrIWDl~t~~-------~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TG---k~---l 2411 (2548)
++.||.-.... .....++....+.|+.|.|.|.++ |-.+++++.||++|||+...+..- .. +
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hl-----GLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei 158 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHL-----GLKLAAASADGILRIYEAPDPMNLSQWTLQHEI 158 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhc-----ceEEEEeccCcEEEEEecCCccccccchhhhhh
Confidence 99999752111 112445666778999999999975 559999999999999996321111 00 1
Q ss_pred eeecCCCCCCCccccccccCCCCCC----ccCCCC------CceEEE------------cccCCCCCEEEEEEeCC----
Q 000054 2412 KHKHSDRGGSSINTCAHADAQTGSG----SKPGDQ------NGMLWY------------IPKAHLGSVTRISTVPN---- 2465 (2548)
Q Consensus 2412 ~tl~~~~~~s~~~~~~vafSpdGk~----v~s~D~------sv~Iwd------------i~~gH~~~VtsLafSPd---- 2465 (2548)
+....+.........++.+++.... +.+.+. .++||. .+.+|..+|+.++|.|+
T Consensus 159 ~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~ 238 (361)
T KOG2445|consen 159 QNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRS 238 (361)
T ss_pred hhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCc
Confidence 1001111122222334556654322 223333 566665 23478999999999995
Q ss_pred CCEEEEEeCCCcEEEEECCCCc-EE-----------EEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEE
Q 000054 2466 TSLFLTGSKDGDVKLWDAKAAQ-LV-----------YHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCG 2531 (2548)
Q Consensus 2466 G~~LaSGS~DGtIrIWDl~Tge-ll-----------~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS 2531 (2548)
-.+||+++.|| |+||.+.... .+ ..++ -.....+.+|.+.| +++.|+-.| |++.|
T Consensus 239 y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~------v~~vs~~~~H~~~V----Wrv~wNmtGtiLsStG 307 (361)
T KOG2445|consen 239 YHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLP------VEKVSELDDHNGEV----WRVRWNMTGTILSSTG 307 (361)
T ss_pred eeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccc------eEEeeeccCCCCce----EEEEEeeeeeEEeecC
Confidence 36899999999 9999987421 11 1110 00122357787544 667999999 78999
Q ss_pred CCCcEEEEECC
Q 000054 2532 GDGSVKLIQLE 2542 (2548)
Q Consensus 2532 ~DGtIrIWDL~ 2542 (2548)
.||+||+|+..
T Consensus 308 dDG~VRLWkan 318 (361)
T KOG2445|consen 308 DDGCVRLWKAN 318 (361)
T ss_pred CCceeeehhhh
Confidence 99999999854
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.2e-14 Score=174.77 Aligned_cols=286 Identities=15% Similarity=0.208 Sum_probs=197.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC-----------CCEEEEEe
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-----------GHRFASAA 2290 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-----------G~~LaSGS 2290 (2548)
+.++.|++....|.....|.+++|||++.-..+.... ...+|..-|++|.--|. ...|.||+
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~-------s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCS 399 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCS-------SMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCS 399 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEecccccccccee-------eeeeccceeeeeccccccccCcccccCCccceeEec
Confidence 5888999999999999999999999998754433321 23456678888877662 23589999
Q ss_pred CCCcEEEEEcCCCccccc------------ccCc--cceec--------c-------CCcccE--EEEcCCCCEEEEEec
Q 000054 2291 LDGTVCTWQLEVGGRSNV------------RPME--SCLCF--------S-------SHAMDV--SYITSSGSVIAAAGH 2339 (2548)
Q Consensus 2291 ~DGtVrVWDl~tgk~i~i------------~p~~--s~~t~--------~-------gH~~~V--~afSpdGslLATgG~ 2339 (2548)
.||+|++|+++.+....+ .+.. ..+.+ . +....+ .+++|+|+++|+|.
T Consensus 400 sD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGD- 478 (1080)
T KOG1408|consen 400 SDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGD- 478 (1080)
T ss_pred CCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccC-
Confidence 999999999976321110 0000 00000 0 011123 25899999999986
Q ss_pred cCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCC
Q 000054 2340 SSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRG 2419 (2548)
Q Consensus 2340 SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~ 2419 (2548)
..|++++||+.. .+....+.+|...|.|+.|+...+ ..++|++++.|+-|.++|+.. ....++++ ..
T Consensus 479 --r~GnlrVy~Lq~--l~~~~~~eAHesEilcLeyS~p~~----~~kLLASasrdRlIHV~Dv~r--ny~l~qtl---d~ 545 (1080)
T KOG1408|consen 479 --RGGNLRVYDLQE--LEYTCFMEAHESEILCLEYSFPVL----TNKLLASASRDRLIHVYDVKR--NYDLVQTL---DG 545 (1080)
T ss_pred --ccCceEEEEehh--hhhhhheecccceeEEEeecCchh----hhHhhhhccCCceEEEEeccc--ccchhhhh---cc
Confidence 789999999975 556677889999999999986642 246999999999999999631 12222232 11
Q ss_pred CCCccccccccCCCCC---C-ccCCCCCceEEEcc---------cCC-----CCCEEEEEEeCCCCEEEEEeCCCcEEEE
Q 000054 2420 GSSINTCAHADAQTGS---G-SKPGDQNGMLWYIP---------KAH-----LGSVTRISTVPNTSLFLTGSKDGDVKLW 2481 (2548)
Q Consensus 2420 ~s~~~~~~vafSpdGk---~-v~s~D~sv~Iwdi~---------~gH-----~~~VtsLafSPdG~~LaSGS~DGtIrIW 2481 (2548)
+ ...++.+-|..+|. . .++.|..+ .+++. ..| ...++.++.+|+.+++++++.|..|+||
T Consensus 546 H-SssITsvKFa~~gln~~MiscGADksi-mFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif 623 (1080)
T KOG1408|consen 546 H-SSSITSVKFACNGLNRKMISCGADKSI-MFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIF 623 (1080)
T ss_pred c-ccceeEEEEeecCCceEEEeccCchhh-heehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEE
Confidence 1 22234444544442 2 33333332 23221 222 3478999999999999999999999999
Q ss_pred ECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2482 DAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2482 Dl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
|+++|+..+.|++. ++|.+.. ..+..+|.| +++...|.++.++|+-+|.
T Consensus 624 ~i~sgKq~k~FKgs-----------~~~eG~l----IKv~lDPSgiY~atScsdktl~~~Df~sgE 674 (1080)
T KOG1408|consen 624 DIESGKQVKSFKGS-----------RDHEGDL----IKVILDPSGIYLATSCSDKTLCFVDFVSGE 674 (1080)
T ss_pred eccccceeeeeccc-----------ccCCCce----EEEEECCCccEEEEeecCCceEEEEeccch
Confidence 99999999998533 4554322 245788999 8899999999999998875
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.4e-13 Score=161.24 Aligned_cols=266 Identities=14% Similarity=0.223 Sum_probs=194.1
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+....|||.++.++.....|.+..|++.++...+....+.++. ..-|.|++|.++|. ++||+.+|+|.||+..
T Consensus 203 v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~e------kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~ 275 (626)
T KOG2106|consen 203 VFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKRE------KKFVLCVTFLENGD-VITGDSGGNILIWSKG 275 (626)
T ss_pred EEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeecccccc------ceEEEEEEEcCCCC-EEeecCCceEEEEeCC
Confidence 5788999999888888888999999999998887766655443 26799999999998 8899999999999997
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCC---------c------------
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTS---------S------------ 2358 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k---------~------------ 2358 (2548)
+.+.. .+.+ .|...|.+ .-.+|.++- || .|+.|..||-.....+ .
T Consensus 276 ~~~~~-------k~~~-aH~ggv~~L~~lr~GtllS-Gg---KDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~ 343 (626)
T KOG2106|consen 276 TNRIS-------KQVH-AHDGGVFSLCMLRDGTLLS-GG---KDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDIL 343 (626)
T ss_pred CceEE-------eEee-ecCCceEEEEEecCccEee-cC---ccceEEeccccccccccccCchhcCCeeEEecCCCcEE
Confidence 55321 1234 88888875 445776665 77 9999999994321100 0
Q ss_pred -----------------ceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCC
Q 000054 2359 -----------------RASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGS 2421 (2548)
Q Consensus 2359 -----------------v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s 2421 (2548)
.....+|.+..+.++.+|+ .++++|++.|+.+++|+- .+..-+.. -
T Consensus 344 vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps-------~~q~~T~gqdk~v~lW~~-----~k~~wt~~-----~ 406 (626)
T KOG2106|consen 344 VGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPS-------KNQLLTCGQDKHVRLWND-----HKLEWTKI-----I 406 (626)
T ss_pred EeeccceEEEeeecCCceEEEEecccceeeEEcCCC-------hhheeeccCcceEEEccC-----CceeEEEE-----e
Confidence 0123468888899999998 679999999999999992 13222210 0
Q ss_pred CccccccccCCCCCC-ccCCCCCceEEEccc-----CC--CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-EEEEe
Q 000054 2422 SINTCAHADAQTGSG-SKPGDQNGMLWYIPK-----AH--LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQ-LVYHW 2492 (2548)
Q Consensus 2422 ~~~~~~vafSpdGk~-v~s~D~sv~Iwdi~~-----gH--~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tge-ll~tL 2492 (2548)
.....++.|.|.|.. ++...+.-.+.|..+ .| ..++++++|+|+|.+||.|+.|+.|.||.+..+. .....
T Consensus 407 ~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~ 486 (626)
T KOG2106|consen 407 EDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRV 486 (626)
T ss_pred cCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEe
Confidence 112345678888843 444455445555321 12 6799999999999999999999999999997544 33333
Q ss_pred cccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEE
Q 000054 2493 SKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2493 ~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWD 2540 (2548)
.-|.+ +.++.+.||+|+ +.+-+.|-.|-+|.
T Consensus 487 --------------~k~~g---s~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 487 --------------GKCSG---SPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred --------------eeecC---ceeEEeeecCCCceEEeccCceEEEEEc
Confidence 11222 557889999999 78999999999993
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.2e-14 Score=162.16 Aligned_cols=268 Identities=15% Similarity=0.186 Sum_probs=178.0
Q ss_pred cCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCC
Q 000054 2217 VENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDG 2293 (2548)
Q Consensus 2217 l~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DG 2293 (2548)
+.+|. +.+++|+.||++|+|.+.|++|+||++..-..... +. ++.....+.-+.++|.||-+-++.. -...
T Consensus 82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH-r~-----~R~nve~dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH-RC-----IRQNVEYDHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh-hH-----hhccccCCCceEEEECCCcceEEEEEccCC
Confidence 44554 79999999999999999999999999886321110 00 1111223457899999987655554 4455
Q ss_pred cEEEEEcCCCcc--c--ccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCC
Q 000054 2294 TVCTWQLEVGGR--S--NVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG 2367 (2548)
Q Consensus 2294 tVrVWDl~tgk~--i--~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~ 2367 (2548)
++++|.+...+. . ...+.........|...+.. ....+.+|+++. .|..|.+||++ ++.+..+.....
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas---~dt~i~lw~lk---Gq~L~~idtnq~ 229 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSAS---LDTKICLWDLK---GQLLQSIDTNQS 229 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEec---CCCcEEEEecC---Cceeeeeccccc
Confidence 899998753211 1 11111111223455556654 455678888884 89999999997 567777777677
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEE
Q 000054 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLW 2447 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iw 2447 (2548)
.-+..+++|+ |.++++++..-.|++|.+-+...|..... .+++
T Consensus 230 ~n~~aavSP~-------GRFia~~gFTpDVkVwE~~f~kdG~fqev------------------------------~rvf 272 (420)
T KOG2096|consen 230 SNYDAAVSPD-------GRFIAVSGFTPDVKVWEPIFTKDGTFQEV------------------------------KRVF 272 (420)
T ss_pred cccceeeCCC-------CcEEEEecCCCCceEEEEEeccCcchhhh------------------------------hhhh
Confidence 7778888998 89999999999999999532222211100 1222
Q ss_pred EcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC----cEEEEecccccccccccCcccCCCCceeecEEEEEEc
Q 000054 2448 YIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAA----QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVV 2523 (2548)
Q Consensus 2448 di~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tg----ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafS 2523 (2548)
. ++||.+.|..++|+|+.+.++|.|.||+++|||..-. +--+.++ .+..+ +..-++ . -..++.+
T Consensus 273 ~-LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk---~g~~p----l~aag~---~-p~RL~ls 340 (420)
T KOG2096|consen 273 S-LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILK---EGSAP----LHAAGS---E-PVRLELS 340 (420)
T ss_pred e-eccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhh---cCCcc----hhhcCC---C-ceEEEeC
Confidence 2 3799999999999999999999999999999998622 1111110 00000 111111 1 2378999
Q ss_pred CCe-EEEEECCCcEEEEECCCCc
Q 000054 2524 SRG-FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2524 PdG-LaSGS~DGtIrIWDL~sg~ 2545 (2548)
|+| +++.+...+++++..++|.
T Consensus 341 P~g~~lA~s~gs~l~~~~se~g~ 363 (420)
T KOG2096|consen 341 PSGDSLAVSFGSDLKVFASEDGK 363 (420)
T ss_pred CCCcEEEeecCCceEEEEcccCc
Confidence 999 7777777889999887763
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.9e-14 Score=185.28 Aligned_cols=209 Identities=15% Similarity=0.200 Sum_probs=158.0
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc---------------eeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK---------------ATATYGVLPAANVPPPYALASISALQFDHYGHRF 2286 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~---------------~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~L 2286 (2548)
+.|+.|+|||.+||+|+.|+.|.||+..... ..+.+..+ .+|...|.+++|+|++.+|
T Consensus 72 v~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l-------~~H~~DV~Dv~Wsp~~~~l 144 (942)
T KOG0973|consen 72 VNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSIL-------RGHDSDVLDVNWSPDDSLL 144 (942)
T ss_pred eeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEE-------ecCCCccceeccCCCccEE
Confidence 7999999999999999999999999987310 11122222 3466999999999999999
Q ss_pred EEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCC-----------
Q 000054 2287 ASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLA----------- 2353 (2548)
Q Consensus 2287 aSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t----------- 2353 (2548)
++++.|++|.+|+..+.+.+ ..+.+|...|- .|.|-|++||+-+ +|++|+||++..
T Consensus 145 vS~s~DnsViiwn~~tF~~~--------~vl~~H~s~VKGvs~DP~Gky~ASqs---dDrtikvwrt~dw~i~k~It~pf 213 (942)
T KOG0973|consen 145 VSVSLDNSVIIWNAKTFELL--------KVLRGHQSLVKGVSWDPIGKYFASQS---DDRTLKVWRTSDWGIEKSITKPF 213 (942)
T ss_pred EEecccceEEEEccccceee--------eeeecccccccceEECCccCeeeeec---CCceEEEEEcccceeeEeeccch
Confidence 99999999999999877433 34778887775 5999999999974 999999999542
Q ss_pred ---------------CCC------------------------CcceeeeccCCCeEEEEEccCCCCCCC-------CCC-
Q 000054 2354 ---------------PPT------------------------SSRASITCHEGGARSISVFDNDLGSGS-------VSP- 2386 (2548)
Q Consensus 2354 ---------------~~~------------------------k~v~sl~gHs~~VtSLafsP~dlg~gs-------~g~- 2386 (2548)
|++ +.-..+.||.+++.++.|+|. +.... ..+
T Consensus 214 ~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~-lfe~~~~ng~~~~~~~ 292 (942)
T KOG0973|consen 214 EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPK-LFERNNKNGTSTQPNC 292 (942)
T ss_pred hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChH-HhccccccCCccCCCc
Confidence 000 011234589999999999885 21111 121
Q ss_pred ---EEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEe
Q 000054 2387 ---LIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTV 2463 (2548)
Q Consensus 2387 ---lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafS 2463 (2548)
.+++|+.|++|.||. ....+.+...+ .-....|..++|+
T Consensus 293 ~y~i~AvgSqDrSlSVW~---T~~~RPl~vi~-----------------------------------~lf~~SI~DmsWs 334 (942)
T KOG0973|consen 293 YYCIAAVGSQDRSLSVWN---TALPRPLFVIH-----------------------------------NLFNKSIVDMSWS 334 (942)
T ss_pred ceEEEEEecCCccEEEEe---cCCCCchhhhh-----------------------------------hhhcCceeeeeEc
Confidence 688899999999999 33444433320 2245689999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCc
Q 000054 2464 PNTSLFLTGSKDGDVKLWDAKAAQ 2487 (2548)
Q Consensus 2464 PdG~~LaSGS~DGtIrIWDl~Tge 2487 (2548)
|||-.|+.+|.||+|.+..++..+
T Consensus 335 pdG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 335 PDGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred CCCCeEEEEecCCeEEEEEcchHH
Confidence 999999999999999999987543
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.8e-14 Score=162.40 Aligned_cols=224 Identities=21% Similarity=0.314 Sum_probs=159.7
Q ss_pred CCCCeEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCcccc----cccCcc---ceeccCCcccEEE---EcCCCCEEEEEe
Q 000054 2270 ALASISALQFDH-YGHRFASAALDGTVCTWQLEVGGRSN----VRPMES---CLCFSSHAMDVSY---ITSSGSVIAAAG 2338 (2548)
Q Consensus 2270 H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWDl~tgk~i~----i~p~~s---~~t~~gH~~~V~a---fSpdGslLATgG 2338 (2548)
|.+.|.++...+ .|+++++|+.||.|.+||++...... +..... .+-..+|...|.. +.-|.-.+.++
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss- 120 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS- 120 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc-
Confidence 568999999988 69999999999999999997542100 000000 1113456666653 44455566665
Q ss_pred ccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCC
Q 000054 2339 HSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDR 2418 (2548)
Q Consensus 2339 ~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~ 2418 (2548)
|.|.++++||+.+ .+....|+ -.+.|.+-+++|-. ....++++|..|-.|++-| +++|.+...+
T Consensus 121 --SFDhtlKVWDtnT--lQ~a~~F~-me~~VYshamSp~a----~sHcLiA~gtr~~~VrLCD---i~SGs~sH~L---- 184 (397)
T KOG4283|consen 121 --SFDHTLKVWDTNT--LQEAVDFK-MEGKVYSHAMSPMA----MSHCLIAAGTRDVQVRLCD---IASGSFSHTL---- 184 (397)
T ss_pred --cccceEEEeeccc--ceeeEEee-cCceeehhhcChhh----hcceEEEEecCCCcEEEEe---ccCCcceeee----
Confidence 5999999999986 44444443 35678887877763 1133888899999999999 7788887776
Q ss_pred CCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCC-cEEEEecccc
Q 000054 2419 GGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTS-LFLTGSKDGDVKLWDAKAA-QLVYHWSKLH 2496 (2548)
Q Consensus 2419 ~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~-~LaSGS~DGtIrIWDl~Tg-ell~tL~~~H 2496 (2548)
.||.+.|.+|.|+|... .|+|||.||.|++||++.. .+...+....
T Consensus 185 --------------------------------sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn 232 (397)
T KOG4283|consen 185 --------------------------------SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHN 232 (397)
T ss_pred --------------------------------ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeeccc
Confidence 89999999999999765 5789999999999999864 5666664322
Q ss_pred cccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCcc
Q 000054 2497 ERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2497 s~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~l 2546 (2548)
.+.+-..++-..|.+. |..++|..+| +++++.|..+++|+..+|.-
T Consensus 233 ~k~~p~~~~n~ah~gk----vngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 233 TKRPPILKTNTAHYGK----VNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred CccCccccccccccce----eeeeeecccchhhhhccCccceEEeecccCcc
Confidence 1222111123455544 5667999999 99999999999999988753
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.9e-14 Score=170.86 Aligned_cols=242 Identities=17% Similarity=0.205 Sum_probs=174.5
Q ss_pred CCCEEEEEECCCeEEEEEcCCC-ce--eEEEec--------cCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCCcEEE
Q 000054 2230 LRPFFLVGSSNTHIYLWEFGKD-KA--TATYGV--------LPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCT 2297 (2548)
Q Consensus 2230 dG~~LASGS~DGsVrLWDl~tg-~~--l~t~~~--------l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DGtVrV 2297 (2548)
-|+|+|.|+.|..|.|||++-- .. ..++.. .........+|++.|.++.|+.. .+.||+|+.|.+|++
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 3789999999999999998721 11 111110 00011124578899999999885 678999999999999
Q ss_pred EEcCCCcccccccCccceeccCCcccEEE--EcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
||+.++++.. ++..|...|.+ |.| ....+++|+ .|++|.+.|.|.+ ...-..+ .-.+.|-.++|
T Consensus 271 WD~~~g~p~~--------s~~~~~k~Vq~l~wh~~~p~~LLsGs---~D~~V~l~D~R~~-~~s~~~w-k~~g~VEkv~w 337 (463)
T KOG0270|consen 271 WDVDTGKPKS--------SITHHGKKVQTLEWHPYEPSVLLSGS---YDGTVALKDCRDP-SNSGKEW-KFDGEVEKVAW 337 (463)
T ss_pred EEcCCCCcce--------ehhhcCCceeEEEecCCCceEEEecc---ccceEEeeeccCc-cccCceE-EeccceEEEEe
Confidence 9999997543 35567777764 554 456777874 8999999999963 2222222 23678999999
Q ss_pred ccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000054 2375 FDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
.|.. ...++++..||+|+-+|+|. .++++.++ ++|.
T Consensus 338 ~~~s------e~~f~~~tddG~v~~~D~R~--~~~~vwt~------------------------------------~AHd 373 (463)
T KOG0270|consen 338 DPHS------ENSFFVSTDDGTVYYFDIRN--PGKPVWTL------------------------------------KAHD 373 (463)
T ss_pred cCCC------ceeEEEecCCceEEeeecCC--CCCceeEE------------------------------------Eecc
Confidence 9985 67888999999999999985 34666555 7899
Q ss_pred CCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEE
Q 000054 2455 GSVTRISTVPN-TSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSC 2530 (2548)
Q Consensus 2455 ~~VtsLafSPd-G~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSG 2530 (2548)
+.|.++++++. ..+++|+|.|+.|++|++..-+.-.+. .|.-.+ ....+.++.|+- ++.|
T Consensus 374 ~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~---------------~~~~~~-~rl~c~~~~~~~a~~la~G 437 (463)
T KOG0270|consen 374 DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK---------------EHSFKL-GRLHCFALDPDVAFTLAFG 437 (463)
T ss_pred CCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc---------------cccccc-cceeecccCCCcceEEEec
Confidence 99999999985 468899999999999998754432211 111111 113444666665 8889
Q ss_pred ECCCcEEEEECCCC
Q 000054 2531 GGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2531 S~DGtIrIWDL~sg 2544 (2548)
|..+.++|||+.++
T Consensus 438 G~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 438 GEKAVLRVWDIFTN 451 (463)
T ss_pred CccceEEEeecccC
Confidence 99899999999765
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.5e-13 Score=158.24 Aligned_cols=236 Identities=13% Similarity=0.110 Sum_probs=163.1
Q ss_pred EEEEEEcCCCCEE-EEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFF-LVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~L-ASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DGtVrVWD 2299 (2548)
+.+++|+|+|+.+ ++++.++.|++||..+++....+.. + ..+..++|+|+++.++++ +.|+.|++||
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~----------~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d 101 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS----------G-PDPELFALHPNGKILYIANEDDNLVTVID 101 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC----------C-CCccEEEECCCCCEEEEEcCCCCeEEEEE
Confidence 3568889999976 5677899999999998877665421 1 235678999999977655 5689999999
Q ss_pred cCCCcccccccCccceecc-CCcccEEEEcCCCCEEEEEeccCCC-CeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000054 2300 LEVGGRSNVRPMESCLCFS-SHAMDVSYITSSGSVIAAAGHSSNG-INVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~-gH~~~V~afSpdGslLATgG~SS~D-GtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
+++++.... +. ++...-..++|+|++++++. .+ ..+.+||..+ .+....+. ....+.++.|+|+
T Consensus 102 ~~~~~~~~~--------~~~~~~~~~~~~~~dg~~l~~~~---~~~~~~~~~d~~~--~~~~~~~~-~~~~~~~~~~s~d 167 (300)
T TIGR03866 102 IETRKVLAE--------IPVGVEPEGMAVSPDGKIVVNTS---ETTNMAHFIDTKT--YEIVDNVL-VDQRPRFAEFTAD 167 (300)
T ss_pred CCCCeEEeE--------eeCCCCcceEEECCCCCEEEEEe---cCCCeEEEEeCCC--CeEEEEEE-cCCCccEEEECCC
Confidence 987643221 11 11112245899999999875 34 4577889865 33333332 2345678899988
Q ss_pred CCCCCCCCCEE-EEEeCCCcEEEEeCCccccCceeeeecCC--CCC-CCccccccccCCCCCC--c-cCCCCCceEEEcc
Q 000054 2378 DLGSGSVSPLI-VTGGKGGDVGIHDFRYIATGKTKKHKHSD--RGG-SSINTCAHADAQTGSG--S-KPGDQNGMLWYIP 2450 (2548)
Q Consensus 2378 dlg~gs~g~lL-VSGS~DGtVrLWDLR~l~TGk~l~tl~~~--~~~-s~~~~~~vafSpdGk~--v-~s~D~sv~Iwdi~ 2450 (2548)
+..+ +++..+|.|++|| +.+++.+..+... ... .......+.++++|+. + ...++.+.+|+..
T Consensus 168 -------g~~l~~~~~~~~~v~i~d---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~ 237 (300)
T TIGR03866 168 -------GKELWVSSEIGGTVSVID---VATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK 237 (300)
T ss_pred -------CCEEEEEcCCCCEEEEEE---cCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence 5666 4555799999999 4556665544211 111 1112235678999986 3 3445678899853
Q ss_pred c-------CCCCCEEEEEEeCCCCEEEEE-eCCCcEEEEECCCCcEEEEe
Q 000054 2451 K-------AHLGSVTRISTVPNTSLFLTG-SKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2451 ~-------gH~~~VtsLafSPdG~~LaSG-S~DGtIrIWDl~Tgell~tL 2492 (2548)
. .+...+.+++|+|+|++|+++ +.+|.|++||+++++++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 238 TYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred CCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 2 244578899999999999887 46999999999999999887
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.1e-14 Score=174.95 Aligned_cols=225 Identities=17% Similarity=0.271 Sum_probs=167.3
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE---EEc-CCCCEEEEEeccCCCC
Q 000054 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS---YIT-SSGSVIAAAGHSSNGI 2344 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~---afS-pdGslLATgG~SS~DG 2344 (2548)
+|...|..+++.+. ..+++++.||++++|+-..++.... ..+.+|.+-|. ++. .++-.+++|+ .|.
T Consensus 12 gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~------~~~~~~~g~i~~~i~y~e~~~~~l~~g~---~D~ 81 (745)
T KOG0301|consen 12 GHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLET------HAFEGPKGFIANSICYAESDKGRLVVGG---MDT 81 (745)
T ss_pred cCccchheeEecCC-eEEeecCCCCceeeeeccCcccccc------eecccCcceeeccceeccccCcceEeec---ccc
Confidence 46688888887644 4799999999999999865543322 22445554333 233 3445677776 899
Q ss_pred eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcc
Q 000054 2345 NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSIN 2424 (2548)
Q Consensus 2345 tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~ 2424 (2548)
+|.+|.... ..+...+.+|...|.++....+ + .++||+-|.++++|-.. ++...+ .++....
T Consensus 82 ~i~v~~~~~--~~P~~~LkgH~snVC~ls~~~~-------~-~~iSgSWD~TakvW~~~-----~l~~~l---~gH~asV 143 (745)
T KOG0301|consen 82 TIIVFKLSQ--AEPLYTLKGHKSNVCSLSIGED-------G-TLISGSWDSTAKVWRIG-----ELVYSL---QGHTASV 143 (745)
T ss_pred eEEEEecCC--CCchhhhhccccceeeeecCCc-------C-ceEecccccceEEecch-----hhhccc---CCcchhe
Confidence 999999976 7889999999999999986655 3 49999999999999853 332222 2233333
Q ss_pred ccccccCCCCCC-ccCCCCCceEEE------cccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccccc
Q 000054 2425 TCAHADAQTGSG-SKPGDQNGMLWY------IPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHE 2497 (2548)
Q Consensus 2425 ~~~vafSpdGk~-v~s~D~sv~Iwd------i~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs 2497 (2548)
. .+..-|++.+ .++.|.++++|. ++.+|...|+.+++-|++ .|++++.||.|+.|++ +|+++.++
T Consensus 144 W-Av~~l~e~~~vTgsaDKtIklWk~~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~----- 215 (745)
T KOG0301|consen 144 W-AVASLPENTYVTGSADKTIKLWKGGTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEM----- 215 (745)
T ss_pred e-eeeecCCCcEEeccCcceeeeccCCchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeee-----
Confidence 3 3344444455 889999999997 678999999999998765 4678999999999999 78888766
Q ss_pred ccccccCcccCCCCceeecEEEEE-EcCCe-EEEEECCCcEEEEECC
Q 000054 2498 RHTFLQPSSRGFGGVVRAGVTDIQ-VVSRG-FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2498 ~hsfl~~tl~GH~~~V~a~VtsLa-fSPdG-LaSGS~DGtIrIWDL~ 2542 (2548)
.||.+ -|+++. ..+++ ++|+|.|++++||+..
T Consensus 216 ---------~ghtn----~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 216 ---------HGHTN----FVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred ---------eccce----EEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 56764 456667 45555 9999999999999965
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-13 Score=158.86 Aligned_cols=264 Identities=19% Similarity=0.240 Sum_probs=175.3
Q ss_pred EEEEEEcCCCCE-EEEEECC-------CeEEEEEcCCCceeEE---EeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe
Q 000054 2222 TRAFSSHPLRPF-FLVGSSN-------THIYLWEFGKDKATAT---YGVLPAANVPPPYALASISALQFDHYGHRFASAA 2290 (2548)
Q Consensus 2222 V~~VsfSPdG~~-LASGS~D-------GsVrLWDl~tg~~l~t---~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS 2290 (2548)
|..++-+|..+. |+|...+ ..+.||.+........ +.... .+.. .+-+.|.|+.|.|++.++++-.
T Consensus 66 vw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~--~Ldt-eavg~i~cvew~Pns~klasm~ 142 (370)
T KOG1007|consen 66 VWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVA--SLDT-EAVGKINCVEWEPNSDKLASMD 142 (370)
T ss_pred eehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhh--cCCH-HHhCceeeEEEcCCCCeeEEec
Confidence 477777886554 4443221 3478999874321111 11100 0011 2336899999999999998876
Q ss_pred CCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcC--CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccC
Q 000054 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITS--SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE 2366 (2548)
Q Consensus 2291 ~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSp--dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs 2366 (2548)
|..|.+|+++.+..+. ....... -.++..... .|+| +|+.+++. .|+++..||+++. .+....-.+|.
T Consensus 143 -dn~i~l~~l~ess~~v-aev~ss~-s~e~~~~ftsg~WspHHdgnqv~tt----~d~tl~~~D~RT~-~~~~sI~dAHg 214 (370)
T KOG1007|consen 143 -DNNIVLWSLDESSKIV-AEVLSSE-SAEMRHSFTSGAWSPHHDGNQVATT----SDSTLQFWDLRTM-KKNNSIEDAHG 214 (370)
T ss_pred -cCceEEEEcccCcchh-eeecccc-cccccceecccccCCCCccceEEEe----CCCcEEEEEccch-hhhcchhhhhc
Confidence 8899999998775421 1000000 112233333 3666 78899987 5999999999962 22333445799
Q ss_pred CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceE
Q 000054 2367 GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGML 2446 (2548)
Q Consensus 2367 ~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~I 2446 (2548)
..|..+.|+|+. ..+|+|||.||.|++||.|+ +...++.+
T Consensus 215 q~vrdlDfNpnk------q~~lvt~gDdgyvriWD~R~--tk~pv~el-------------------------------- 254 (370)
T KOG1007|consen 215 QRVRDLDFNPNK------QHILVTCGDDGYVRIWDTRK--TKFPVQEL-------------------------------- 254 (370)
T ss_pred ceeeeccCCCCc------eEEEEEcCCCccEEEEeccC--CCcccccc--------------------------------
Confidence 999999999995 66999999999999999875 23334443
Q ss_pred EEcccCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEEEecc-----------cccccccccC----cccCCC
Q 000054 2447 WYIPKAHLGSVTRISTVP-NTSLFLTGSKDGDVKLWDAKAAQLVYHWSK-----------LHERHTFLQP----SSRGFG 2510 (2548)
Q Consensus 2447 wdi~~gH~~~VtsLafSP-dG~~LaSGS~DGtIrIWDl~Tgell~tL~~-----------~Hs~hsfl~~----tl~GH~ 2510 (2548)
.+|..+|++|.|+| ..+++.|||.|..|.+|...+-.-...+.. ..+++..++. ++..|.
T Consensus 255 ----~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE 330 (370)
T KOG1007|consen 255 ----PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE 330 (370)
T ss_pred ----CCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc
Confidence 78999999999999 468899999999999998764321111111 1112222222 466677
Q ss_pred CceeecEEEEEEcCCe---EEEEECCCcEEEEECCCC
Q 000054 2511 GVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2511 ~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~sg 2544 (2548)
+ .|++++||... ||+-|.||.+.|=+++..
T Consensus 331 D----SVY~~aWSsadPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 331 D----SVYALAWSSADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred c----ceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence 5 45777999777 899999999998777653
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.4e-13 Score=157.44 Aligned_cols=229 Identities=14% Similarity=0.158 Sum_probs=157.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCC--EEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGH--RFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~--~LaSGS~DGtVrVWD 2299 (2548)
+.+++|+.+|..+++|+.|+.+++||+.+++. ..+. .|.++|..+.|-+... .|+||+.|++|+.||
T Consensus 75 vL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~-~~v~----------~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD 143 (347)
T KOG0647|consen 75 VLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV-SQVA----------AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWD 143 (347)
T ss_pred eEEEEEccCCceEEeeccCCceEEEEccCCCe-eeee----------ecccceeEEEEecCCCcceeEecccccceeecc
Confidence 79999999999999999999999999999954 3432 2669999999988655 899999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
.+....+.. + .-..+|.+.+--..+++++. .++.|.+|+++.+..+.......-.-.++||+...+
T Consensus 144 ~R~~~pv~t--------~-~LPeRvYa~Dv~~pm~vVat---a~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d-- 209 (347)
T KOG0647|consen 144 TRSSNPVAT--------L-QLPERVYAADVLYPMAVVAT---AERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQD-- 209 (347)
T ss_pred cCCCCeeee--------e-eccceeeehhccCceeEEEe---cCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEec--
Confidence 986542221 1 11234444333334555554 689999999976433322222223346789998888
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR 2459 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts 2459 (2548)
....+.|+-.|.+.+..+. .+.....+.. ..+. +. ... .+.--+|.+
T Consensus 210 -----~~~~alGsiEGrv~iq~id---~~~~~~nFtF-kCHR-----------~~---~~~----------~~~VYaVNs 256 (347)
T KOG0647|consen 210 -----KDGFALGSIEGRVAIQYID---DPNPKDNFTF-KCHR-----------ST---NSV----------NDDVYAVNS 256 (347)
T ss_pred -----CCceEeeeecceEEEEecC---CCCccCceeE-EEec-----------cC---CCC----------CCceEEecc
Confidence 4556999999999999853 3221111100 0000 00 000 001126789
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe
Q 000054 2460 ISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG 2526 (2548)
Q Consensus 2460 LafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG 2526 (2548)
|+|+|.-..|+|+|.||+..+||-..+..+++. ..|. ..|++.+|+.+|
T Consensus 257 i~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s--------------~~~~----qpItcc~fn~~G 305 (347)
T KOG0647|consen 257 IAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS--------------ETHP----QPITCCSFNRNG 305 (347)
T ss_pred eEeecccceEEEecCCceEEEecchhhhhhhcc--------------CcCC----CccceeEecCCC
Confidence 999999999999999999999998877777654 3444 345777999999
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.8e-13 Score=149.15 Aligned_cols=231 Identities=18% Similarity=0.215 Sum_probs=178.0
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC----CCEEEEEe-CCCcEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY----GHRFASAA-LDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd----G~~LaSGS-~DGtVr 2296 (2548)
+.|.+|+|.|.++++|+.|.+|++..++...+.. .+|......|.+.|..++|-.+ +..|++++ .|..|.
T Consensus 92 iyc~~ws~~geliatgsndk~ik~l~fn~dt~~~-----~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy 166 (350)
T KOG0641|consen 92 IYCTAWSPCGELIATGSNDKTIKVLPFNADTCNA-----TGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIY 166 (350)
T ss_pred EEEEEecCccCeEEecCCCceEEEEecccccccc-----cCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEE
Confidence 5899999999999999999999998877554322 2444455668899999999653 55666654 345666
Q ss_pred EEEcCCCcccccccCccceeccCCcccEEE-EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee--cc-----CCC
Q 000054 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSY-ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT--CH-----EGG 2368 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~a-fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~--gH-----s~~ 2368 (2548)
+-|..+|+ ..+.+.+|+.-|.+ ++++|-.+++| |.|.+|++||++. ..++..+. .| ++.
T Consensus 167 ~tdc~~g~--------~~~a~sghtghilalyswn~~m~~sg---sqdktirfwdlrv--~~~v~~l~~~~~~~glessa 233 (350)
T KOG0641|consen 167 ITDCGRGQ--------GFHALSGHTGHILALYSWNGAMFASG---SQDKTIRFWDLRV--NSCVNTLDNDFHDGGLESSA 233 (350)
T ss_pred EeecCCCC--------cceeecCCcccEEEEEEecCcEEEcc---CCCceEEEEeeec--cceeeeccCcccCCCcccce
Confidence 66666554 23457889988886 78889999998 4999999999987 34554443 23 356
Q ss_pred eEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceE
Q 000054 2369 ARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGML 2446 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~I 2446 (2548)
|.++++.|. |.+|++|-.|....+||+| -++.++.++. ....+.++-|+|...+ .++.|..+++
T Consensus 234 vaav~vdps-------grll~sg~~dssc~lydir---g~r~iq~f~p----hsadir~vrfsp~a~yllt~syd~~ikl 299 (350)
T KOG0641|consen 234 VAAVAVDPS-------GRLLASGHADSSCMLYDIR---GGRMIQRFHP----HSADIRCVRFSPGAHYLLTCSYDMKIKL 299 (350)
T ss_pred eEEEEECCC-------cceeeeccCCCceEEEEee---CCceeeeeCC----CccceeEEEeCCCceEEEEecccceEEE
Confidence 899999998 8999999999999999965 5777777632 2344667889998777 6777888887
Q ss_pred EEcc------------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 000054 2447 WYIP------------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2447 wdi~------------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
-|+. -.|...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 300 tdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 300 TDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 7742 2588888899999999999999999999999764
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-14 Score=169.41 Aligned_cols=229 Identities=17% Similarity=0.186 Sum_probs=167.1
Q ss_pred CCCCCCeEEEEEccCC-CEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeE
Q 000054 2268 PYALASISALQFDHYG-HRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2268 ~~H~~~VtsVaFSPdG-~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtV 2346 (2548)
.+|.+.|.+++=+|.. ..+++|+.||.|++||+.+..+. .++..|.+.|..+.-+...++++| +|++|
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~--------~~f~AH~G~V~Gi~v~~~~~~tvg---dDKtv 131 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI--------RTFKAHEGLVRGICVTQTSFFTVG---DDKTV 131 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh--------heeecccCceeeEEecccceEEec---CCcce
Confidence 3577999999999975 78999999999999999865433 347888888875444446777777 89999
Q ss_pred EEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000054 2347 VVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2347 rIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
+.|.+.. .+.+++.+ .+.+..+.-+.. +..++|+|. .|.|||.. ....++.+ ......+.
T Consensus 132 K~wk~~~---~p~~tilg-~s~~~gIdh~~~-------~~~FaTcGe--~i~IWD~~---R~~Pv~sm----swG~Dti~ 191 (433)
T KOG0268|consen 132 KQWKIDG---PPLHTILG-KSVYLGIDHHRK-------NSVFATCGE--QIDIWDEQ---RDNPVSSM----SWGADSIS 191 (433)
T ss_pred eeeeccC---Ccceeeec-cccccccccccc-------cccccccCc--eeeecccc---cCCcccee----ecCCCcee
Confidence 9999875 36666654 445666664444 568888876 48999953 23344333 12223344
Q ss_pred ccccCCCCCC---ccCCCCCceEEEcccCC-------CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-EEEEeccc
Q 000054 2427 AHADAQTGSG---SKPGDQNGMLWYIPKAH-------LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQ-LVYHWSKL 2495 (2548)
Q Consensus 2427 ~vafSpdGk~---v~s~D~sv~Iwdi~~gH-------~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tge-ll~tL~~~ 2495 (2548)
.+.|+|.... .+..|+.+.++|..++. .-.-+.++|+|.+-.|++|++|..++.+|++.-+ ++..
T Consensus 192 svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v---- 267 (433)
T KOG0268|consen 192 SVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNV---- 267 (433)
T ss_pred EEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchh----
Confidence 5667776443 56688999999975542 2234578999988889999999999999998532 2221
Q ss_pred ccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2496 HERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2496 Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.++|. ++|.+++|||.| |+|||.|.+||||.+..+.
T Consensus 268 ----------~~dhv----sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 268 ----------HKDHV----SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH 305 (433)
T ss_pred ----------hcccc----eeEEEeccCCCcchhccccccceEEEeecCCCc
Confidence 25665 567899999999 9999999999999998764
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.5e-13 Score=155.20 Aligned_cols=276 Identities=16% Similarity=0.131 Sum_probs=183.2
Q ss_pred CccCCeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCc
Q 000054 2215 ATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT 2294 (2548)
Q Consensus 2215 ~tl~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGt 2294 (2548)
.++......|+.|++-|.+||+|+.||.|.|||+.|-..-..+ ..|..+|++++|+++|++|+|++.|..
T Consensus 19 ~tld~~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l----------saH~~pi~sl~WS~dgr~LltsS~D~s 88 (405)
T KOG1273|consen 19 HTLDNPLAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML----------SAHVRPITSLCWSRDGRKLLTSSRDWS 88 (405)
T ss_pred eeccCCccceEEeccCcceeeeeccCCcEEEEEccccchhhhh----------hccccceeEEEecCCCCEeeeecCCce
Confidence 3444444789999999999999999999999999986644443 236689999999999999999999999
Q ss_pred EEEEEcCCCcccccccCccceeccCCcccEEE--EcCCC-CEEEEEeccCCCCeEEEEECCCCCCCcceee-ecc-CCCe
Q 000054 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSG-SVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCH-EGGA 2369 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdG-slLATgG~SS~DGtVrIWDl~t~~~k~v~sl-~gH-s~~V 2369 (2548)
|++||+..|....... + ..+|+. |.|.. +.+++.- .+..-.+-++..+....+..- .+. +...
T Consensus 89 i~lwDl~~gs~l~rir------f---~spv~~~q~hp~k~n~~va~~---~~~sp~vi~~s~~~h~~Lp~d~d~dln~sa 156 (405)
T KOG1273|consen 89 IKLWDLLKGSPLKRIR------F---DSPVWGAQWHPRKRNKCVATI---MEESPVVIDFSDPKHSVLPKDDDGDLNSSA 156 (405)
T ss_pred eEEEeccCCCceeEEE------c---cCccceeeeccccCCeEEEEE---ecCCcEEEEecCCceeeccCCCcccccccc
Confidence 9999999886443211 1 233332 44432 2322221 333344444432111111000 000 1111
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEE
Q 000054 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLW 2447 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iw 2447 (2548)
.+..|.+. |+++++|...|.+.++| ..+-+++..++. .....+..+-++..|+. +.+.|+.++.+
T Consensus 157 s~~~fdr~-------g~yIitGtsKGkllv~~---a~t~e~vas~ri---ts~~~IK~I~~s~~g~~liiNtsDRvIR~y 223 (405)
T KOG1273|consen 157 SHGVFDRR-------GKYIITGTSKGKLLVYD---AETLECVASFRI---TSVQAIKQIIVSRKGRFLIINTSDRVIRTY 223 (405)
T ss_pred ccccccCC-------CCEEEEecCcceEEEEe---cchheeeeeeee---chheeeeEEEEeccCcEEEEecCCceEEEE
Confidence 22345555 88999999999999999 555566665522 22233455667777776 77888889999
Q ss_pred Eccc----CCC---------------CCEEEEEEeCCCCEEEEEeC-CCcEEEEECCCCcEEEEecccccccccccCccc
Q 000054 2448 YIPK----AHL---------------GSVTRISTVPNTSLFLTGSK-DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSR 2507 (2548)
Q Consensus 2448 di~~----gH~---------------~~VtsLafSPdG~~LaSGS~-DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~ 2507 (2548)
++.. +.. -.-.++.|+.+|.|++.|+. -..++||.-..|.+++.+.
T Consensus 224 e~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh-------------- 289 (405)
T KOG1273|consen 224 EISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH-------------- 289 (405)
T ss_pred ehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeec--------------
Confidence 8531 111 12357889999999998875 4479999999999998772
Q ss_pred CCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCC
Q 000054 2508 GFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2508 GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~s 2543 (2548)
|-.+ ....++.|+|-. +++- +.|+|+||....
T Consensus 290 G~kg---E~l~DV~whp~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 290 GTKG---EELLDVNWHPVRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred CCch---hheeecccccceeeeeec-cCCceEEEEeec
Confidence 2111 123567899988 4444 889999998753
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-13 Score=162.55 Aligned_cols=150 Identities=20% Similarity=0.326 Sum_probs=113.8
Q ss_pred CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc--CCCEEEEEeCCCcEEEEEcCCCcccccc
Q 000054 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH--YGHRFASAALDGTVCTWQLEVGGRSNVR 2309 (2548)
Q Consensus 2232 ~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP--dG~~LaSGS~DGtVrVWDl~tgk~i~i~ 2309 (2548)
..+|++-..|+|++||..+++.+..++.++ ..+..++|.. ..+.+.+|+.||+|++||++...+....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~----------~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~ 110 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPP----------ATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI 110 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCC----------CcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe
Confidence 468889999999999999999888887644 5577888876 5788999999999999999977544322
Q ss_pred cCccceeccCCc-ccEEEEc--CCCCEEEEEecc-CCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCC
Q 000054 2310 PMESCLCFSSHA-MDVSYIT--SSGSVIAAAGHS-SNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVS 2385 (2548)
Q Consensus 2310 p~~s~~t~~gH~-~~V~afS--pdGslLATgG~S-S~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g 2385 (2548)
.+..+. ....++. ..++++++|..- -.+-.|.+||+|........-...|.+.|+++.|+|++ .
T Consensus 111 ------~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~------p 178 (376)
T KOG1188|consen 111 ------SWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD------P 178 (376)
T ss_pred ------eccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC------C
Confidence 133343 3334443 356777776311 14667999999974222344556899999999999997 8
Q ss_pred CEEEEEeCCCcEEEEeCC
Q 000054 2386 PLIVTGGKGGDVGIHDFR 2403 (2548)
Q Consensus 2386 ~lLVSGS~DGtVrLWDLR 2403 (2548)
++|+||+.||.|.+||+.
T Consensus 179 nlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred CeEEeecccceEEeeecC
Confidence 899999999999999965
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.7e-13 Score=173.15 Aligned_cols=291 Identities=15% Similarity=0.200 Sum_probs=193.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc--CCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH--YGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP--dG~~LaSGS~DGtVrVWD 2299 (2548)
...+.|||-.+.++++...-.|++||++.++....|.... .-...|+.+.+-. |..++++|+.||.|+||+
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~-------~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGA-------FPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccccCCC-------CCCCccceeeeecccchhheeeeccCceEEEec
Confidence 3567889999999999988899999999998877765311 1236799999965 567899999999999998
Q ss_pred cCCCcccccccCccceeccC------CcccEEEEcCC-CCEEEEEeccCCCCeEEEEECCCCCCCcceeee-ccCCCeEE
Q 000054 2300 LEVGGRSNVRPMESCLCFSS------HAMDVSYITSS-GSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT-CHEGGARS 2371 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~g------H~~~V~afSpd-GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~-gHs~~VtS 2371 (2548)
--.....+..-......+.+ ..+.|..|... |.++++ | +-+.|+|||... ...++.+. +-+..|++
T Consensus 1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~t-G---d~r~IRIWDa~~--E~~~~diP~~s~t~vTa 1213 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVT-G---DVRSIRIWDAHK--EQVVADIPYGSSTLVTA 1213 (1387)
T ss_pred ccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEec-C---CeeEEEEEeccc--ceeEeecccCCCcccee
Confidence 53221001010111111111 22344455544 445555 4 578999999975 34444444 34456777
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCC--C-ccCCCCCceEEE
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGS--G-SKPGDQNGMLWY 2448 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk--~-v~s~D~sv~Iwd 2448 (2548)
+.-.-.+ |++++.|..||.|++||.|+......+...+.+.. ...+..+.+.+.|. + .++.+|.+++||
T Consensus 1214 LS~~~~~------gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~--~~~Iv~~slq~~G~~elvSgs~~G~I~~~D 1285 (1387)
T KOG1517|consen 1214 LSADLVH------GNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHND--VEPIVHLSLQRQGLGELVSGSQDGDIQLLD 1285 (1387)
T ss_pred ecccccC------CceEEEeecCCceEEeecccCCccccceeecccCC--cccceeEEeecCCCcceeeeccCCeEEEEe
Confidence 7644443 78999999999999999986433322222211111 11133445555433 3 788899999999
Q ss_pred ccc----------CCC--C-CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceee
Q 000054 2449 IPK----------AHL--G-SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRA 2515 (2548)
Q Consensus 2449 i~~----------gH~--~-~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a 2515 (2548)
+.. .|. + ..+++..|++...+|+|+. +.|+||++. |+.+..++ .+ ..| -|. .+ .
T Consensus 1286 lR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k-~n--~~F-----~~q--~~-g 1352 (1387)
T KOG1517|consen 1286 LRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIK-YN--PGF-----MGQ--RI-G 1352 (1387)
T ss_pred cccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccc-cC--ccc-----ccC--cC-C
Confidence 633 232 3 5899999999999999998 999999986 55555442 11 111 111 12 3
Q ss_pred cEEEEEEcCCe--EEEEECCCcEEEEECCCCcc
Q 000054 2516 GVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2516 ~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~l 2546 (2548)
.+.+++|+|.. +|+|+.|.+|.||..+++.+
T Consensus 1353 s~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1353 SVSCLAFHPHRLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred CcceeeecchhHhhhhccCCceEEEeecCCcCC
Confidence 45889999999 88999999999999887654
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8e-13 Score=155.19 Aligned_cols=247 Identities=14% Similarity=0.181 Sum_probs=169.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+.+|.+ ...+++|+-||.|+++|+.++..... ..|.+.|++|.+++....+++|+.|++|++||.+
T Consensus 57 lL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~i-----------gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R 124 (323)
T KOG1036|consen 57 LLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQI-----------GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPR 124 (323)
T ss_pred eeeeeccC-CceEEEeccCceEEEEEecCCcceee-----------ccCCCceEEEEeeccCCeEEEcccCccEEEEecc
Confidence 56667766 55789999999999999998865433 2266999999999988899999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcce-eeeccCCCeEEEEEccCCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA-SITCHEGGARSISVFDNDLG 2380 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~-sl~gHs~~VtSLafsP~dlg 2380 (2548)
...... -......|.+.+-.|+.|++|+ .|..|.+||++.- ....+ .-..-.-.++||+..|+
T Consensus 125 ~~~~~~---------~~d~~kkVy~~~v~g~~LvVg~---~~r~v~iyDLRn~-~~~~q~reS~lkyqtR~v~~~pn--- 188 (323)
T KOG1036|consen 125 NKVVVG---------TFDQGKKVYCMDVSGNRLVVGT---SDRKVLIYDLRNL-DEPFQRRESSLKYQTRCVALVPN--- 188 (323)
T ss_pred cccccc---------ccccCceEEEEeccCCEEEEee---cCceEEEEEcccc-cchhhhccccceeEEEEEEEecC---
Confidence 532111 1122347888888899999986 8999999999863 11221 11123346899999996
Q ss_pred CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEE
Q 000054 2381 SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRI 2460 (2548)
Q Consensus 2381 ~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsL 2460 (2548)
+.-.+.++-||.|.+=.+. .....+.. ..+|---. ...++ ..---+|.++
T Consensus 189 ----~eGy~~sSieGRVavE~~d---~s~~~~sk------------kyaFkCHr---~~~~~--------~~~~yPVNai 238 (323)
T KOG1036|consen 189 ----GEGYVVSSIEGRVAVEYFD---DSEEAQSK------------KYAFKCHR---LSEKD--------TEIIYPVNAI 238 (323)
T ss_pred ----CCceEEEeecceEEEEccC---CchHHhhh------------ceeEEeee---cccCC--------ceEEEEecee
Confidence 5577888999998876632 11111110 00000000 00000 0112379999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEEC-----C
Q 000054 2461 STVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGG-----D 2533 (2548)
Q Consensus 2461 afSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~-----D 2533 (2548)
+|+|-...|+||+.||.|.+||+.+.+.+..+. ... ..|..++|+.+| ||.++. .
T Consensus 239 ~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~--------------~~~----~SI~slsfs~dG~~LAia~sy~ye~~ 300 (323)
T KOG1036|consen 239 AFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLA--------------KYE----TSISSLSFSMDGSLLAIASSYQYERA 300 (323)
T ss_pred EeccccceEEecCCCceEEEccCcchhhhhhcc--------------CCC----CceEEEEeccCCCeEEEEechhhhcC
Confidence 999999999999999999999999998887661 111 236778999999 665543 2
Q ss_pred Cc-------EEEEECCCC
Q 000054 2534 GS-------VKLIQLEDY 2544 (2548)
Q Consensus 2534 Gt-------IrIWDL~sg 2544 (2548)
.+ |.|.++.+.
T Consensus 301 ~~~~~~~~~i~I~~l~d~ 318 (323)
T KOG1036|consen 301 DTPTHERNAIFIRDLTDY 318 (323)
T ss_pred CCCCCCCCceEEEecccc
Confidence 33 777777654
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.4e-13 Score=157.09 Aligned_cols=243 Identities=19% Similarity=0.241 Sum_probs=175.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc------------eeEEEeccCCCCCCCCCCCCCeEEEEEc-------cC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK------------ATATYGVLPAANVPPPYALASISALQFD-------HY 2282 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~------------~l~t~~~l~ghs~~~~~H~~~VtsVaFS-------Pd 2282 (2548)
.....|+|||..|++-+.|..+++|++...- ....++.. ..+.|...+|- |+
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~---------eg~tvydy~wYs~M~s~qP~ 122 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ---------EGETVYDYCWYSRMKSDQPS 122 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEec---------cCCEEEEEEeeeccccCCCc
Confidence 4667899999999999999999999985211 01111111 12678888885 56
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccE-----EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCC
Q 000054 2283 GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDV-----SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTS 2357 (2548)
Q Consensus 2283 G~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V-----~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k 2357 (2548)
..++++.+.|.-|++||.-+|+.... .....|...+ .+|+|||..|++| ..+.|+++|+..+...
T Consensus 123 t~l~a~ssr~~PIh~wdaftG~lraS------y~~ydh~de~taAhsL~Fs~DGeqlfaG----ykrcirvFdt~RpGr~ 192 (406)
T KOG2919|consen 123 TNLFAVSSRDQPIHLWDAFTGKLRAS------YRAYDHQDEYTAAHSLQFSPDGEQLFAG----YKRCIRVFDTSRPGRD 192 (406)
T ss_pred cceeeeccccCceeeeeccccccccc------hhhhhhHHhhhhheeEEecCCCCeEeec----ccceEEEeeccCCCCC
Confidence 78999999999999999998863211 0112233333 2599999999987 6899999999543222
Q ss_pred c-ceeee-----ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccC
Q 000054 2358 S-RASIT-----CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADA 2431 (2548)
Q Consensus 2358 ~-v~sl~-----gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafS 2431 (2548)
+ +.... +..+-+.+++|+|.+ ...++.|+....+-|+. -..++.+..+
T Consensus 193 c~vy~t~~~~k~gq~giisc~a~sP~~------~~~~a~gsY~q~~giy~---~~~~~pl~ll----------------- 246 (406)
T KOG2919|consen 193 CPVYTTVTKGKFGQKGIISCFAFSPMD------SKTLAVGSYGQRVGIYN---DDGRRPLQLL----------------- 246 (406)
T ss_pred CcchhhhhcccccccceeeeeeccCCC------CcceeeecccceeeeEe---cCCCCceeee-----------------
Confidence 2 32222 336788999999996 67899999888888877 3334444444
Q ss_pred CCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECCC-CcEEEEecccccccccccCcccCC
Q 000054 2432 QTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSK-DGDVKLWDAKA-AQLVYHWSKLHERHTFLQPSSRGF 2509 (2548)
Q Consensus 2432 pdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~-DGtIrIWDl~T-gell~tL~~~Hs~hsfl~~tl~GH 2509 (2548)
-+|.+.|+-+.|.++|+.|++|+. |-.|-.||++. +.++..+ .+|
T Consensus 247 -------------------ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L--------------~rh 293 (406)
T KOG2919|consen 247 -------------------GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYAL--------------ERH 293 (406)
T ss_pred -------------------cccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhh--------------hhh
Confidence 689999999999999999999986 77999999985 5556554 344
Q ss_pred CCceeecEEEEEEcCCe--EEEEECCCcEEEEECCC
Q 000054 2510 GGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2510 ~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~s 2543 (2548)
.+..+..| -....|+| |++|+.||.|++||+++
T Consensus 294 v~~TNQRI-~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 294 VGDTNQRI-LFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred ccCccceE-EEecCCCCceeeccCCCccEEEEecCC
Confidence 43222322 22556777 88999999999999986
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.8e-13 Score=167.19 Aligned_cols=255 Identities=16% Similarity=0.220 Sum_probs=170.7
Q ss_pred ccCCCCccCCeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEE
Q 000054 2210 YVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFAS 2288 (2548)
Q Consensus 2210 ~v~p~~tl~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaS 2288 (2548)
+..+..|...| ..+.|-|....|++++.|.++++||+.+++.+..- -..+|.+.|.+++|.+ +...|++
T Consensus 93 lk~~~aH~nAi--fDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~--------~~~GH~~SvkS~cf~~~n~~vF~t 162 (720)
T KOG0321|consen 93 LKKPLAHKNAI--FDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR--------LNLGHTGSVKSECFMPTNPAVFCT 162 (720)
T ss_pred hccccccccee--EeeccCCCceeEEEccCCceeeeeeeccceeecce--------eecccccccchhhhccCCCcceee
Confidence 45566666666 88888896678889999999999999988766541 1234779999999999 5678999
Q ss_pred EeCCCcEEEEEcCCCcccc-------------c--ccCcc----ceeccCCcccEE----E-EcCCCCEEEEEeccCCCC
Q 000054 2289 AALDGTVCTWQLEVGGRSN-------------V--RPMES----CLCFSSHAMDVS----Y-ITSSGSVIAAAGHSSNGI 2344 (2548)
Q Consensus 2289 GS~DGtVrVWDl~tgk~i~-------------i--~p~~s----~~t~~gH~~~V~----a-fSpdGslLATgG~SS~DG 2344 (2548)
|+.||.|.|||++...... . .+... ......+...|. . +..|...||++|. .|+
T Consensus 163 GgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga--~D~ 240 (720)
T KOG0321|consen 163 GGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGA--ADS 240 (720)
T ss_pred ccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccC--CCc
Confidence 9999999999987442100 0 00000 001122333332 1 4568899999983 599
Q ss_pred eEEEEECCCCC----CCcc--eeeecc---CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeec
Q 000054 2345 NVVVWDTLAPP----TSSR--ASITCH---EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKH 2415 (2548)
Q Consensus 2345 tVrIWDl~t~~----~k~v--~sl~gH---s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~ 2415 (2548)
.|++||++.+. +++. ..+..| .-++.++..... |++|...+.|++|++||++.....- +..+.
T Consensus 241 ~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDss-------Gt~L~AsCtD~sIy~ynm~s~s~sP-~~~~s 312 (720)
T KOG0321|consen 241 TIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSS-------GTYLFASCTDNSIYFYNMRSLSISP-VAEFS 312 (720)
T ss_pred ceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCC-------CCeEEEEecCCcEEEEeccccCcCc-hhhcc
Confidence 99999998531 1122 223233 335666665554 6777777779999999986432221 11110
Q ss_pred CCCCCCCccccccccCCCCCC--ccCCCCCceEEEc---------ccCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEEC
Q 000054 2416 SDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI---------PKAHLGSVTRISTVPNT-SLFLTGSKDGDVKLWDA 2483 (2548)
Q Consensus 2416 ~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi---------~~gH~~~VtsLafSPdG-~~LaSGS~DGtIrIWDl 2483 (2548)
+.........-..+|++.+ .++.+...++|.+ +.||...|++++|.|.. .-++|+++|.+++||++
T Consensus 313 --g~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 313 --GKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred --CcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence 0011111222346788887 7788889999984 46899999999999843 44667799999999999
Q ss_pred CCC
Q 000054 2484 KAA 2486 (2548)
Q Consensus 2484 ~Tg 2486 (2548)
..+
T Consensus 391 ~~~ 393 (720)
T KOG0321|consen 391 SNG 393 (720)
T ss_pred cCc
Confidence 654
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-12 Score=153.65 Aligned_cols=208 Identities=14% Similarity=0.215 Sum_probs=142.0
Q ss_pred CCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEE
Q 000054 2268 PYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVV 2347 (2548)
Q Consensus 2268 ~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVr 2347 (2548)
.+|.+.|++++|+.||++|+|++.|++|++|+++.-....-+.... ..-.+|...| .|.||.+-++.... ...+++
T Consensus 83 KgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V-~FapDc~s~vv~~~--~g~~l~ 158 (420)
T KOG2096|consen 83 KGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRV-VFAPDCKSVVVSVK--RGNKLC 158 (420)
T ss_pred hccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEE-EECCCcceEEEEEc--cCCEEE
Confidence 4577999999999999999999999999999997532111000000 0122355444 48889876666542 577899
Q ss_pred EEECCCC-CCC-cce--------eeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCC
Q 000054 2348 VWDTLAP-PTS-SRA--------SITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSD 2417 (2548)
Q Consensus 2348 IWDl~t~-~~k-~v~--------sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~ 2417 (2548)
+|.+... ++. ... .-+.|.-.+..+-.... +.+|++++.|..|.+||++ |+.+.++
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-------~k~imsas~dt~i~lw~lk----Gq~L~~i--- 224 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-------AKYIMSASLDTKICLWDLK----GQLLQSI--- 224 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecCC-------ceEEEEecCCCcEEEEecC----Cceeeee---
Confidence 9986421 111 111 11134444444443333 7899999999999999954 6777776
Q ss_pred CCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC---CCcE---EEE
Q 000054 2418 RGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK---AAQL---VYH 2491 (2548)
Q Consensus 2418 ~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~---Tgel---l~t 2491 (2548)
......-+..+.+|+|+++++++.--.|+||.+- .|+. .+.
T Consensus 225 ---------------------------------dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rv 271 (420)
T KOG2096|consen 225 ---------------------------------DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRV 271 (420)
T ss_pred ---------------------------------ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhh
Confidence 1122233456789999999999999999999863 2221 111
Q ss_pred ecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECC
Q 000054 2492 WSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2492 L~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
| .++||. ++|...+|+++. ++|.|.||++|+||.+
T Consensus 272 f------------~LkGH~----saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 272 F------------SLKGHQ----SAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred h------------eeccch----hheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 1 368997 556777999998 9999999999999985
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-12 Score=160.91 Aligned_cols=246 Identities=17% Similarity=0.220 Sum_probs=179.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+++++|+.+.+.||.+-.||+|-||++..+-..... +.++ ....|.+++|. ++.+|++.+.+|+|.-||+.
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~v--i~g~------~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPV--IHGP------EDRSIESLAWA-EGGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCceeeEE--EecC------CCCceeeEEEc-cCCeEEeecCCceEEEEecc
Confidence 799999999999999999999999999875443322 1111 23789999999 56668999999999999999
Q ss_pred CCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
+++.. ..+....+.|+ +.+|.+..++.|+ +||.+..++.....-+....+...++.|.++.|+|+
T Consensus 99 ~lk~~--------~~~d~~gg~IWsiai~p~~~~l~Igc---ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~-- 165 (691)
T KOG2048|consen 99 TLKQK--------YNIDSNGGAIWSIAINPENTILAIGC---DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPT-- 165 (691)
T ss_pred cCcee--------EEecCCCcceeEEEeCCccceEEeec---CCceEEEEecCCceEEEEeecccccceEEEEEecCC--
Confidence 87532 22445556666 4788889999986 899777777654211123344455789999999999
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR 2459 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts 2459 (2548)
+..+++|+.||.|++|| ..++..+...... +-...++...-|++
T Consensus 166 -----~~~i~~Gs~Dg~Iriwd---~~~~~t~~~~~~~----------------------------~d~l~k~~~~iVWS 209 (691)
T KOG2048|consen 166 -----GTKIAGGSIDGVIRIWD---VKSGQTLHIITMQ----------------------------LDRLSKREPTIVWS 209 (691)
T ss_pred -----ccEEEecccCceEEEEE---cCCCceEEEeeec----------------------------ccccccCCceEEEE
Confidence 66799999999999999 4555554421000 00000223345677
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEE
Q 000054 2460 ISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVK 2537 (2548)
Q Consensus 2460 LafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIr 2537 (2548)
|.|-. ...+++|..-|+|++||...|.+++.+ +.|... |.+++..+++ ++++|.|+.|.
T Consensus 210 v~~Lr-d~tI~sgDS~G~V~FWd~~~gTLiqS~--------------~~h~ad----Vl~Lav~~~~d~vfsaGvd~~ii 270 (691)
T KOG2048|consen 210 VLFLR-DSTIASGDSAGTVTFWDSIFGTLIQSH--------------SCHDAD----VLALAVADNEDRVFSAGVDPKII 270 (691)
T ss_pred EEEee-cCcEEEecCCceEEEEcccCcchhhhh--------------hhhhcc----eeEEEEcCCCCeEEEccCCCceE
Confidence 87774 457889999999999999999988755 455543 5667888886 99999999999
Q ss_pred EEECCCC
Q 000054 2538 LIQLEDY 2544 (2548)
Q Consensus 2538 IWDL~sg 2544 (2548)
-+...++
T Consensus 271 ~~~~~~~ 277 (691)
T KOG2048|consen 271 QYSLTTN 277 (691)
T ss_pred EEEecCC
Confidence 9888765
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-12 Score=161.78 Aligned_cols=300 Identities=15% Similarity=0.167 Sum_probs=190.7
Q ss_pred CCccCCeE--EEEEEEcCCCC---EEEEEECCCeEEEEEcCCCceeE---------------------EEe--ccCCCCC
Q 000054 2214 PATVENIS--TRAFSSHPLRP---FFLVGSSNTHIYLWEFGKDKATA---------------------TYG--VLPAANV 2265 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPdG~---~LASGS~DGsVrLWDl~tg~~l~---------------------t~~--~l~ghs~ 2265 (2548)
...++||. |+.++|...+. +||++|+|..||||.+.-+.... .+. .- -+ .
T Consensus 184 v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is-~e-a 261 (764)
T KOG1063|consen 184 VAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRIS-FE-A 261 (764)
T ss_pred EEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEe-hh-h
Confidence 34566666 78888876444 78899999999999975322000 000 00 00 0
Q ss_pred CCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCC
Q 000054 2266 PPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNG 2343 (2548)
Q Consensus 2266 ~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~D 2343 (2548)
-..+|.+.|.++.|+|.+..|++++.|.++.+|.-....-+-.... ..-...+....... |+|+++.+++-| ..
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~v-RlGe~gg~a~GF~g~lw~~n~~~ii~~g---~~ 337 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVV-RLGEVGGSAGGFWGGLWSPNSNVIIAHG---RT 337 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEE-EeecccccccceeeEEEcCCCCEEEEec---cc
Confidence 1347889999999999999999999999999998764421110000 00012233334442 899999888876 78
Q ss_pred CeEEEEECCCC-CCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCc------------------
Q 000054 2344 INVVVWDTLAP-PTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRY------------------ 2404 (2548)
Q Consensus 2344 GtVrIWDl~t~-~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~------------------ 2404 (2548)
|..++|....+ .......+.||.++|+.|.|.|. |.+|++.|.|.+-|+|---.
T Consensus 338 Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~ps-------GeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl 410 (764)
T KOG1063|consen 338 GGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPS-------GEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDL 410 (764)
T ss_pred CcEEEEeccCccceeeccccccccccceeeeecCC-------CCEEEEeccccceeeecccccccceeeecccccccccc
Confidence 99999994321 11234567799999999999999 78999999999999986310
Q ss_pred -----cc---------cCceeeeecCCCC--CCCc-----cccccccCCCCCC---ccCC--------CCCc--------
Q 000054 2405 -----IA---------TGKTKKHKHSDRG--GSSI-----NTCAHADAQTGSG---SKPG--------DQNG-------- 2444 (2548)
Q Consensus 2405 -----l~---------TGk~l~tl~~~~~--~s~~-----~~~~vafSpdGk~---v~s~--------D~sv-------- 2444 (2548)
+. ..+.++.+..+.. .... ........|+|.. .+-+ ..++
T Consensus 411 ~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 411 TCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred eeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 00 0001111100000 0000 0000001112111 0000 0011
Q ss_pred ----------------------eEEE---cccCCCCCEEEEEEeCCCCEEEEEeCCC-----cEEEEECCCCcEEEEecc
Q 000054 2445 ----------------------MLWY---IPKAHLGSVTRISTVPNTSLFLTGSKDG-----DVKLWDAKAAQLVYHWSK 2494 (2548)
Q Consensus 2445 ----------------------~Iwd---i~~gH~~~VtsLafSPdG~~LaSGS~DG-----tIrIWDl~Tgell~tL~~ 2494 (2548)
.+|. -+-||...|++++.+|+|+++||++... .|++|+..+-..++.+
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L-- 568 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL-- 568 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee--
Confidence 1111 0238999999999999999999998743 6899999877666655
Q ss_pred cccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000054 2495 LHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2495 ~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
.+|+ -.|+.++||||| |++.|.|.++.+|....+
T Consensus 569 ------------~~Hs----LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~ 604 (764)
T KOG1063|consen 569 ------------EGHS----LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQED 604 (764)
T ss_pred ------------cccc----eEEEEEEECCCCcEEEEeecCceEEeeeeecc
Confidence 6776 457999999999 899999999999998654
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-13 Score=164.01 Aligned_cols=238 Identities=13% Similarity=0.246 Sum_probs=159.7
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCC
Q 000054 2267 PPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGI 2344 (2548)
Q Consensus 2267 ~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DG 2344 (2548)
.-.|.+.|.++..+...+.++||+. |.|+|||+.... ...|....-|++. .+.+. -+.|||+.+++|| .-.
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg--~k~PvsqLdcl~r-dnyiRSckL~pdgrtLivGG---eas 487 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPG--NKSPVSQLDCLNR-DNYIRSCKLLPDGRTLIVGG---EAS 487 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCC--CCCccccccccCc-ccceeeeEecCCCceEEecc---ccc
Confidence 3457788889999988999999875 899999997543 2233333334432 23333 3889999999998 678
Q ss_pred eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcc
Q 000054 2345 NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSIN 2424 (2548)
Q Consensus 2345 tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~ 2424 (2548)
++.|||+..+.......+..-.-.+..++.+|+ .++..++..||.|.|||++ ....++.+.. ....
T Consensus 488 tlsiWDLAapTprikaeltssapaCyALa~spD-------akvcFsccsdGnI~vwDLh---nq~~VrqfqG----htDG 553 (705)
T KOG0639|consen 488 TLSIWDLAAPTPRIKAELTSSAPACYALAISPD-------AKVCFSCCSDGNIAVWDLH---NQTLVRQFQG----HTDG 553 (705)
T ss_pred eeeeeeccCCCcchhhhcCCcchhhhhhhcCCc-------cceeeeeccCCcEEEEEcc---cceeeecccC----CCCC
Confidence 999999987655555555555567788999998 7899999999999999965 3445555511 1112
Q ss_pred ccccccCCCCCC--ccCCCCCceEEEcccC-----CC--CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccc
Q 000054 2425 TCAHADAQTGSG--SKPGDQNGMLWYIPKA-----HL--GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKL 2495 (2548)
Q Consensus 2425 ~~~vafSpdGk~--v~s~D~sv~Iwdi~~g-----H~--~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~ 2495 (2548)
..++.+++||.. .++-|++++.||..++ |+ +.|.++..+|++.+|+.|-+.+.+.|-.....+.- .
T Consensus 554 ascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky-q---- 628 (705)
T KOG0639|consen 554 ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY-Q---- 628 (705)
T ss_pred ceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccce-e----
Confidence 234455555543 5555666666665332 33 24666666666666666666665555444322111 1
Q ss_pred ccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000054 2496 HERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2496 Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
+.-|. +.|.++.|.+.| +++.|.|..+..|+.+-|
T Consensus 629 ----------lhlhe----ScVLSlKFa~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 629 ----------LHLHE----SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred ----------ecccc----cEEEEEEecccCceeeecCchhhhhhccCccc
Confidence 23455 446788999999 999999999999998765
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.4e-13 Score=160.08 Aligned_cols=258 Identities=14% Similarity=0.146 Sum_probs=182.2
Q ss_pred ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCC-EEEEEeCCCcEEEEEcCCCcccccccCcccee
Q 000054 2238 SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGH-RFASAALDGTVCTWQLEVGGRSNVRPMESCLC 2316 (2548)
Q Consensus 2238 S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~-~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t 2316 (2548)
+....++|||+...+...+|-.+. + ...+.++.|+.... .+++.+.|..+++|.-... . ...| ....
T Consensus 9 S~gd~~kl~D~s~~~~~~~~~~~t----~----~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~-~-~~Vp--~~~k 76 (673)
T KOG4378|consen 9 STGDKTKLSDFSDLETKSEYVHQT----A----EPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK-T-PEVP--RVRK 76 (673)
T ss_pred ccCCceEEeecccccCccccccCC----C----CCcceeeeccccceEEEeecCCceeEEEecccCC-C-Cccc--eeec
Confidence 333469999998766555543211 1 13499999987664 2334467789999976422 1 1011 0111
Q ss_pred ccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCc
Q 000054 2317 FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGD 2396 (2548)
Q Consensus 2317 ~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGt 2396 (2548)
..+....+.+......++++|| ..+.|+|||++. ..+.+.+++|.+.|+++.|+.. ..+|++++..|.
T Consensus 77 ~~gd~~~Cv~~~s~S~y~~sgG---~~~~Vkiwdl~~--kl~hr~lkdh~stvt~v~YN~~-------DeyiAsvs~gGd 144 (673)
T KOG4378|consen 77 LTGDNAFCVACASQSLYEISGG---QSGCVKIWDLRA--KLIHRFLKDHQSTVTYVDYNNT-------DEYIASVSDGGD 144 (673)
T ss_pred cccchHHHHhhhhcceeeeccC---cCceeeehhhHH--HHHhhhccCCcceeEEEEecCC-------cceeEEeccCCc
Confidence 2222222222223457888888 789999999985 5567888999999999999887 469999999999
Q ss_pred EEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC---ccCCCCCceEEEcc---------cCCCCCEEEEEEeC
Q 000054 2397 VGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG---SKPGDQNGMLWYIP---------KAHLGSVTRISTVP 2464 (2548)
Q Consensus 2397 VrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~---v~s~D~sv~Iwdi~---------~gH~~~VtsLafSP 2464 (2548)
|.|.. +.++.....+..+ .......+.+++..+. +++.++.+.+||+. +.|..+...|+|+|
T Consensus 145 iiih~---~~t~~~tt~f~~~---sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfsp 218 (673)
T KOG4378|consen 145 IIIHG---TKTKQKTTTFTID---SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSP 218 (673)
T ss_pred EEEEe---cccCccccceecC---CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecC
Confidence 99999 5555544444211 1222356678887776 77888999999963 47999999999999
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEEC
Q 000054 2465 -NTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2465 -dG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL 2541 (2548)
+..+|++.|.|..|.+||.++.+...++. .. ...+.++|+++| |+.|...|.|..||+
T Consensus 219 sne~l~vsVG~Dkki~~yD~~s~~s~~~l~---y~----------------~Plstvaf~~~G~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 219 SNEALLVSVGYDKKINIYDIRSQASTDRLT---YS----------------HPLSTVAFSECGTYLCAGNSKGELIAYDM 279 (673)
T ss_pred CccceEEEecccceEEEeecccccccceee---ec----------------CCcceeeecCCceEEEeecCCceEEEEec
Confidence 56788999999999999999877766552 11 234667999999 889999999999999
Q ss_pred CCC
Q 000054 2542 EDY 2544 (2548)
Q Consensus 2542 ~sg 2544 (2548)
...
T Consensus 280 R~~ 282 (673)
T KOG4378|consen 280 RST 282 (673)
T ss_pred ccC
Confidence 764
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-12 Score=154.99 Aligned_cols=299 Identities=15% Similarity=0.153 Sum_probs=193.8
Q ss_pred ccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCcee---EEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe
Q 000054 2216 TVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKAT---ATYGVLPAANVPPPYALASISALQFDHYGHRFASAA 2290 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l---~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS 2290 (2548)
.+.+|+ |.++.|+.++++|++|+.|..+++|+++..-.. +.+.. ....|...|.|++|+...+++++|+
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~------~~~~H~SNIF~L~F~~~N~~~~SG~ 124 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGV------MEHPHRSNIFSLEFDLENRFLYSGE 124 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCcee------ccCccccceEEEEEccCCeeEecCC
Confidence 344444 789999999999999999999999998742111 11211 2233778999999999999999999
Q ss_pred CCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCc-ceeeeccCC
Q 000054 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS-RASITCHEG 2367 (2548)
Q Consensus 2291 ~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~-v~sl~gHs~ 2367 (2548)
.+|+|..-|+++.+.+.+. ......++|.- .+|..+.+++.. .++.|.+||.+..+... .........
T Consensus 125 ~~~~VI~HDiEt~qsi~V~------~~~~~~~~VY~m~~~P~DN~~~~~t---~~~~V~~~D~Rd~~~~~~~~~~AN~~~ 195 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIYVA------NENNNRGDVYHMDQHPTDNTLIVVT---RAKLVSFIDNRDRQNPISLVLPANSGK 195 (609)
T ss_pred CcceeEeeecccceeeeee------cccCcccceeecccCCCCceEEEEe---cCceEEEEeccCCCCCCceeeecCCCc
Confidence 9999999999987644321 12222346663 678788888874 89999999998642111 222223445
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCC-CCCccccccccCCCCCC-ccCCCCCc-
Q 000054 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRG-GSSINTCAHADAQTGSG-SKPGDQNG- 2444 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~-~s~~~~~~vafSpdGk~-v~s~D~sv- 2444 (2548)
...++.|+|.. ..+|++.+..|-+.+||+|+.+.. .++.-..... ..........|+|+|.. .+...+..
T Consensus 196 ~F~t~~F~P~~------P~Li~~~~~~~G~~~~D~R~~~~~-~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P 268 (609)
T KOG4227|consen 196 NFYTAEFHPET------PALILVNSETGGPNVFDRRMQARP-VYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCP 268 (609)
T ss_pred cceeeeecCCC------ceeEEeccccCCCCceeeccccch-HHhhhccccCcccchhhhheeeCCCCCeehhhhccCCC
Confidence 67889999985 779999999999999999853221 1111001111 11223456678888876 33333333
Q ss_pred eEEEcc--------cCCC-------CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecc-ccc-----ccccc-
Q 000054 2445 MLWYIP--------KAHL-------GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSK-LHE-----RHTFL- 2502 (2548)
Q Consensus 2445 ~Iwdi~--------~gH~-------~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~-~Hs-----~hsfl- 2502 (2548)
.++|+. ..|. ..+.+++|.-+- .++||+.+-.|++|.+....--.-|.. .|. ...|+
T Consensus 269 ~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~ 347 (609)
T KOG4227|consen 269 LYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIE 347 (609)
T ss_pred EEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheec
Confidence 233321 1232 246677776554 489999999999999863211111100 000 00011
Q ss_pred --cCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEEC
Q 000054 2503 --QPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2503 --~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL 2541 (2548)
.-.++||... +.++.|+|.. |++.|..+.+|+|.-
T Consensus 348 ~~~~VLrGHRSv----~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 348 KELTVLRGHRSV----PNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ceeEEEeccccc----ccceeecCCcceEeccchhhheecccc
Confidence 1137899854 4667999998 778899999999974
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.6e-12 Score=144.11 Aligned_cols=253 Identities=15% Similarity=0.176 Sum_probs=168.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|.+-+++|.+++|++|..+|.|.+..+..-..-.....-...-+++..|.++|+.++|. ..+|++|+ ||.|+-|.++
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~ 89 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWN 89 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeeh
Confidence 34556779999999999999999998864211000000000001345678999999998 45566665 5999999986
Q ss_pred CCcc-cccccCccceeccCCc-----ccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000054 2302 VGGR-SNVRPMESCLCFSSHA-----MDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2302 tgk~-i~i~p~~s~~t~~gH~-----~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
...+ ...++....+ .+-|. ..|. .+.|..+-++++| .|+.++-||+++ ++..+.+++|++.|.++.
T Consensus 90 E~~es~~~K~lwe~~-~P~~~~~~evPeINam~ldP~enSi~~Ag---GD~~~y~~dlE~--G~i~r~~rGHtDYvH~vv 163 (325)
T KOG0649|consen 90 EEEESLATKRLWEVK-IPMQVDAVEVPEINAMWLDPSENSILFAG---GDGVIYQVDLED--GRIQREYRGHTDYVHSVV 163 (325)
T ss_pred hhhhhccchhhhhhc-CccccCcccCCccceeEeccCCCcEEEec---CCeEEEEEEecC--CEEEEEEcCCcceeeeee
Confidence 5432 1111111111 11122 2333 3677666555555 699999999987 788899999999999998
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCC
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAH 2453 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH 2453 (2548)
--.. ...+.+|+.||++|+|| .+++++++.+....... ....|
T Consensus 164 ~R~~-------~~qilsG~EDGtvRvWd---~kt~k~v~~ie~yk~~~---------------------------~lRp~ 206 (325)
T KOG0649|consen 164 GRNA-------NGQILSGAEDGTVRVWD---TKTQKHVSMIEPYKNPN---------------------------LLRPD 206 (325)
T ss_pred eccc-------CcceeecCCCccEEEEe---ccccceeEEeccccChh---------------------------hcCcc
Confidence 6444 45899999999999999 66788887762111100 01223
Q ss_pred -CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEEC
Q 000054 2454 -LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGG 2532 (2548)
Q Consensus 2454 -~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS~ 2532 (2548)
..+|.+++. +..++++|+. -.+.+|++++.++..+|+ +++ .|..+.|..+-++++|.
T Consensus 207 ~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfp------------ipa-------~v~~v~F~~d~vl~~G~ 264 (325)
T KOG0649|consen 207 WGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFP------------IPA-------RVHLVDFVDDCVLIGGE 264 (325)
T ss_pred cCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEEe------------ccc-------ceeEeeeecceEEEecc
Confidence 346777776 5678888764 478999999999988884 233 35556777777777777
Q ss_pred CCcEEEEECC
Q 000054 2533 DGSVKLIQLE 2542 (2548)
Q Consensus 2533 DGtIrIWDL~ 2542 (2548)
.+.|.-|.+.
T Consensus 265 g~~v~~~~l~ 274 (325)
T KOG0649|consen 265 GNHVQSYTLN 274 (325)
T ss_pred ccceeeeeec
Confidence 7777777764
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.6e-12 Score=154.89 Aligned_cols=284 Identities=14% Similarity=0.195 Sum_probs=170.6
Q ss_pred EEEEEEcC--CCCEEEEE--ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 000054 2222 TRAFSSHP--LRPFFLVG--SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSP--dG~~LASG--S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrV 2297 (2548)
|.|++|++ .|.+++.- +.+..+.+||+..+......+.. .+.|....|+|.+..++.....|.+.+
T Consensus 157 V~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~s----------ne~v~~a~FHPtd~nliit~Gk~H~~F 226 (626)
T KOG2106|consen 157 VTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTS----------NEVVFLATFHPTDPNLIITCGKGHLYF 226 (626)
T ss_pred ceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceec----------cceEEEEEeccCCCcEEEEeCCceEEE
Confidence 58888887 35555543 56677999999987766555432 278999999997666666666799999
Q ss_pred EEcCCCcccccccCccceeccCCcc-cEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAM-DVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~-~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
|+.+.+...+.. ..+.++.. -|. +|.++|..+ ||. .+|+|.||+... .+..+....|.++|.+++.
T Consensus 227 w~~~~~~l~k~~-----~~fek~ekk~Vl~v~F~engdvi-TgD---S~G~i~Iw~~~~--~~~~k~~~aH~ggv~~L~~ 295 (626)
T KOG2106|consen 227 WTLRGGSLVKRQ-----GIFEKREKKFVLCVTFLENGDVI-TGD---SGGNILIWSKGT--NRISKQVHAHDGGVFSLCM 295 (626)
T ss_pred EEccCCceEEEe-----eccccccceEEEEEEEcCCCCEE-eec---CCceEEEEeCCC--ceEEeEeeecCCceEEEEE
Confidence 999887543211 12444433 333 488888754 554 799999999965 4444455599999999998
Q ss_pred ccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCce---EEE---
Q 000054 2375 FDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGM---LWY--- 2448 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~---Iwd--- 2448 (2548)
..+. .|++|+.|+.|..||-. ..+-+.+.. +.... ....++-...+-+++...+.+- +-+
T Consensus 296 lr~G--------tllSGgKDRki~~Wd~~-y~k~r~~el---Pe~~G--~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~ 361 (626)
T KOG2106|consen 296 LRDG--------TLLSGGKDRKIILWDDN-YRKLRETEL---PEQFG--PIRTVAEGKGDILVGTTRNFILQGTLENGFT 361 (626)
T ss_pred ecCc--------cEeecCccceEEecccc-ccccccccC---chhcC--CeeEEecCCCcEEEeeccceEEEeeecCCce
Confidence 8873 66779999999999932 111111111 10000 0011111111111333222221 100
Q ss_pred -cccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecc--------cc----------cccccccC-----
Q 000054 2449 -IPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSK--------LH----------ERHTFLQP----- 2504 (2548)
Q Consensus 2449 -i~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~--------~H----------s~hsfl~~----- 2504 (2548)
+..+|....+.++.+|+...++|++.|+.+++|+ ..+++.+..- .| +++-|+..
T Consensus 362 ~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~ 439 (626)
T KOG2106|consen 362 LTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQD 439 (626)
T ss_pred EEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccce
Confidence 1245666667777777777777777777777776 3333332210 11 11111000
Q ss_pred cccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000054 2505 SSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2505 tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
...-|.. .+.++.++|+|+| ||.|+.|+.|++|.++.+
T Consensus 440 lv~~~~d--~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 440 LVTIHTD--NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred eEEEEec--CCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 0111222 2456788999999 999999999999999865
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.2e-12 Score=153.10 Aligned_cols=287 Identities=13% Similarity=0.120 Sum_probs=195.2
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCce------eEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCc
Q 000054 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKA------TATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT 2294 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~------l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGt 2294 (2548)
+..+.|++++. .++||+.|..|+||.+..+.. +.-... ...|...|++|+|+|+|..+++|+.+|.
T Consensus 16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~-------Ls~H~~aVN~vRf~p~gelLASg~D~g~ 88 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSS-------LSRHTRAVNVVRFSPDGELLASGGDGGE 88 (434)
T ss_pred eEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeec-------ccCCcceeEEEEEcCCcCeeeecCCCce
Confidence 67888888776 999999999999999875432 222222 3346799999999999999999999999
Q ss_pred EEEEEcCCCc------cc--ccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeec
Q 000054 2295 VCTWQLEVGG------RS--NVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC 2364 (2548)
Q Consensus 2295 VrVWDl~tgk------~i--~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g 2364 (2548)
|.+|....-. +. ........+...+|..++. +|++++++++++. -|+.+++||+.. +.....+..
T Consensus 89 v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s---~dns~~l~Dv~~--G~l~~~~~d 163 (434)
T KOG1009|consen 89 VFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGS---VDNSVRLWDVHA--GQLLAILDD 163 (434)
T ss_pred EEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeee---ccceEEEEEecc--ceeEeeccc
Confidence 9999876210 00 0000112344677888887 5999999999985 899999999987 778888889
Q ss_pred cCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeee------c----------CCCCCCCcccccc
Q 000054 2365 HEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHK------H----------SDRGGSSINTCAH 2428 (2548)
Q Consensus 2365 Hs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl------~----------~~~~~s~~~~~~v 2428 (2548)
|...+..++|.|- ++++++-+.|...+.+++.......++... . ..+..-.......
T Consensus 164 h~~yvqgvawDpl-------~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRl 236 (434)
T KOG1009|consen 164 HEHYVQGVAWDPL-------NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRL 236 (434)
T ss_pred cccccceeecchh-------hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhc
Confidence 9999999999998 678888888887777775321111111100 0 0111112333456
Q ss_pred ccCCCCCCccCCCCCc-----------eEEE---------cccCCCCCEEEEEEeC------------------CCCEEE
Q 000054 2429 ADAQTGSGSKPGDQNG-----------MLWY---------IPKAHLGSVTRISTVP------------------NTSLFL 2470 (2548)
Q Consensus 2429 afSpdGk~v~s~D~sv-----------~Iwd---------i~~gH~~~VtsLafSP------------------dG~~La 2470 (2548)
.|+|+|..+....+.. +++. ...+-..++..+.|+| .+-.++
T Consensus 237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred ccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 7889988743333221 2221 0112334555666665 122345
Q ss_pred EEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2471 TGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2471 SGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.++ ...|.|||.++-.++....+.| .+.+++++|+++| ++..|.||-..+-.++...
T Consensus 317 iAt-~~svyvydtq~~~P~~~v~nih-----------------y~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 317 IAT-KNSVYVYDTQTLEPLAVVDNIH-----------------YSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred Eee-cceEEEeccccccceEEEeeee-----------------eeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 554 4589999999888887663222 2568999999999 8888999988777766543
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=154.07 Aligned_cols=246 Identities=15% Similarity=0.165 Sum_probs=175.6
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEEcCCCcccccc
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCTWQLEVGGRSNVR 2309 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DGtVrVWDl~tgk~i~i~ 2309 (2548)
.+++|+|+.-|.|+|.|+.+++....+.+ |...|..+.|.|+ .+++++|+.|.+|++|++++..++.+.
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~g----------hG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRG----------HGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhccceec----------cCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence 67999999999999999999988877754 5689999999996 578999999999999999998876543
Q ss_pred cCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCC-----------------------cce---e
Q 000054 2310 PMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTS-----------------------SRA---S 2361 (2548)
Q Consensus 2310 p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k-----------------------~v~---s 2361 (2548)
- -..+|.+.|.+ |+.+|..|+++| .|..+++|++..+... .+- +
T Consensus 175 G-----G~egHrdeVLSvD~~~~gd~i~ScG---mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst 246 (385)
T KOG1034|consen 175 G-----GVEGHRDEVLSVDFSLDGDRIASCG---MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFST 246 (385)
T ss_pred c-----ccccccCcEEEEEEcCCCCeeeccC---CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccc
Confidence 2 26789999986 899999999998 8999999998732100 000 1
Q ss_pred eeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCC
Q 000054 2362 ITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGD 2441 (2548)
Q Consensus 2362 l~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D 2441 (2548)
-.-|...|.|+.|.-+ ++++-+-++.|..|-... -++.+... .-.+
T Consensus 247 ~diHrnyVDCvrw~gd---------~ilSkscenaI~~w~pgk--l~e~~~~v-----------------------kp~e 292 (385)
T KOG1034|consen 247 TDIHRNYVDCVRWFGD---------FILSKSCENAIVCWKPGK--LEESIHNV-----------------------KPPE 292 (385)
T ss_pred cccccchHHHHHHHhh---------heeecccCceEEEEecch--hhhhhhcc-----------------------CCCc
Confidence 1247777888887644 999999999999998421 11111110 0011
Q ss_pred CCceEEEcccCCCCCEEE--EEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEE
Q 000054 2442 QNGMLWYIPKAHLGSVTR--ISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTD 2519 (2548)
Q Consensus 2442 ~sv~Iwdi~~gH~~~Vts--LafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vts 2519 (2548)
....+...+.-....|+- .+|+|-+++||.|...|.|.+||++..++...-. + -|.. -.+.|.+
T Consensus 293 s~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~tt------------l-~~s~-~~~tVRQ 358 (385)
T KOG1034|consen 293 SATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTT------------L-THSK-SGSTVRQ 358 (385)
T ss_pred cceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCce------------E-Eecc-ccceeee
Confidence 112222222333334444 4567788999999999999999999876641110 0 0111 1145778
Q ss_pred EEEcCCe--EEEEECCCcEEEEECC
Q 000054 2520 IQVVSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2520 LafSPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
.+|+.|| |+...+|++|--||.-
T Consensus 359 ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 359 TSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eeecccCcEEEEEeCCCcEEEEEee
Confidence 8999999 7788999999999853
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-11 Score=145.18 Aligned_cols=245 Identities=19% Similarity=0.203 Sum_probs=164.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc--CCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH--YGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP--dG~~LaSGS~DGtVrVWD 2299 (2548)
+.++.|.+.|+.+|+++.|++|+|||.......-.... ....|.+.|..|.|.+ -|+.+|+++.|++++||.
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts------~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTS------SWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEee------eEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 79999999999999999999999999754322111110 1223669999999965 599999999999999998
Q ss_pred cCCCccccc-ccCccceeccCCcccEE--EEcC--CCCEEEEEeccCCCCeEEEEECCCCC----CCcceeee-------
Q 000054 2300 LEVGGRSNV-RPMESCLCFSSHAMDVS--YITS--SGSVIAAAGHSSNGINVVVWDTLAPP----TSSRASIT------- 2363 (2548)
Q Consensus 2300 l~tgk~i~i-~p~~s~~t~~gH~~~V~--afSp--dGslLATgG~SS~DGtVrIWDl~t~~----~k~v~sl~------- 2363 (2548)
-........ +.-....++......|. .|.| -|-.+|+++ .||.++||+.-.+. ....+.++
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~---aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAAS---ADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEec---cCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 632111000 00001122333444554 3555 466788875 89999999975321 12223333
Q ss_pred ccCCCeEEEEEccCCCCCCCCCCEEEEEeCC-----CcEEEEeCCccccC-ceeeeecCCCCCCCccccccccCCC-CCC
Q 000054 2364 CHEGGARSISVFDNDLGSGSVSPLIVTGGKG-----GDVGIHDFRYIATG-KTKKHKHSDRGGSSINTCAHADAQT-GSG 2436 (2548)
Q Consensus 2364 gHs~~VtSLafsP~dlg~gs~g~lLVSGS~D-----GtVrLWDLR~l~TG-k~l~tl~~~~~~s~~~~~~vafSpd-Gk~ 2436 (2548)
.+.....||.|+|.. .-.++|+.|+.+ +.++||... ..+ +..+.-... .....+..+.|.|+ |+.
T Consensus 167 ~~~~~~~CvsWn~sr----~~~p~iAvgs~e~a~~~~~~~Iye~~--e~~rKw~kva~L~--d~~dpI~di~wAPn~Gr~ 238 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSR----MHEPLIAVGSDEDAPHLNKVKIYEYN--ENGRKWLKVAELP--DHTDPIRDISWAPNIGRS 238 (361)
T ss_pred cccCcceEEeecccc----ccCceEEEEcccCCccccceEEEEec--CCcceeeeehhcC--CCCCcceeeeeccccCCc
Confidence 467788999999773 125578888766 588999842 333 222221111 22334566788887 554
Q ss_pred -----ccCCCCCceEEEc----------------------------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 000054 2437 -----SKPGDQNGMLWYI----------------------------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDA 2483 (2548)
Q Consensus 2437 -----v~s~D~sv~Iwdi----------------------------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl 2483 (2548)
+++.|| ++||++ +.+|.+.|+.+.|+-.|..|++.|.||.||+|..
T Consensus 239 y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 239 YHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA 317 (361)
T ss_pred eeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence 555665 888873 2479999999999999999999999999999986
Q ss_pred C
Q 000054 2484 K 2484 (2548)
Q Consensus 2484 ~ 2484 (2548)
.
T Consensus 318 n 318 (361)
T KOG2445|consen 318 N 318 (361)
T ss_pred h
Confidence 5
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.1e-13 Score=164.65 Aligned_cols=243 Identities=16% Similarity=0.252 Sum_probs=170.8
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeE
Q 000054 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtV 2346 (2548)
.|.+.|++++|++....|++|+.||++++|++.......-..+....++.+|..+|.| ++.++..+++|| .||+|
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg---~Dg~I 368 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG---IDGTI 368 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec---cCcee
Confidence 3668899999999999999999999999999944322222344567789999999986 788999999998 89999
Q ss_pred EEEECCCC--------CCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCC
Q 000054 2347 VVWDTLAP--------PTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDR 2418 (2548)
Q Consensus 2347 rIWDl~t~--------~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~ 2418 (2548)
+.|++-.. .......+.||.+.|+.+++++. ...|++++.||+|++|+.. .... .++....
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~-------~~~Llscs~DgTvr~w~~~---~~~~-~~f~~~~ 437 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSST-------KDRLLSCSSDGTVRLWEPT---EESP-CTFGEPK 437 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeeccc-------ccceeeecCCceEEeeccC---CcCc-cccCCcc
Confidence 99965310 01234577899999999999988 5689999999999999953 2222 2221111
Q ss_pred CCCCccccccccCCCCCC--ccCCCC------------CceEEEcc--c--CCCCCEEEEEEeCCCCEEEEEeCCCcEEE
Q 000054 2419 GGSSINTCAHADAQTGSG--SKPGDQ------------NGMLWYIP--K--AHLGSVTRISTVPNTSLFLTGSKDGDVKL 2480 (2548)
Q Consensus 2419 ~~s~~~~~~vafSpdGk~--v~s~D~------------sv~Iwdi~--~--gH~~~VtsLafSPdG~~LaSGS~DGtIrI 2480 (2548)
... ....+.+....-. +++... ...+.... . .-...+..+.++|.+.+.+++..|+.|++
T Consensus 438 e~g--~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~ 515 (577)
T KOG0642|consen 438 EHG--YPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRF 515 (577)
T ss_pred ccC--CcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceec
Confidence 111 0111111111100 111110 11111110 0 12246788999999999999999999999
Q ss_pred EECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2481 WDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2481 WDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+|..++++++.. ..|- .+|+++++.|+| |++|+.||.+++|+++...
T Consensus 516 ~dn~~~~~l~s~--------------~a~~----~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 516 FDNKTGKILHSM--------------VAHK----DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred ccccccccchhe--------------eecc----ceecceeecCCCceEEeecCCceeehhhccchh
Confidence 999999998755 3343 356888999999 8999999999999997653
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-12 Score=156.29 Aligned_cols=207 Identities=17% Similarity=0.212 Sum_probs=150.9
Q ss_pred EEEEEEcCC-CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPL-RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPd-G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWD 2299 (2548)
+..++|+.. ...||+||.|.+|.+||+.+|++..++. .|.+.|.++.|+| ....|++|+.||+|.+.|
T Consensus 246 vl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~----------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D 315 (463)
T KOG0270|consen 246 VLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT----------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKD 315 (463)
T ss_pred HHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh----------hcCCceeEEEecCCCceEEEeccccceEEeee
Confidence 456666654 4588999999999999999999988863 3569999999999 578899999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
.+...+... .-.+.+....|. |.+.....+.++ ++||+|+-+|+|.+ ++++.++++|.++|.++++++..
T Consensus 316 ~R~~~~s~~-----~wk~~g~VEkv~-w~~~se~~f~~~--tddG~v~~~D~R~~-~~~vwt~~AHd~~ISgl~~n~~~- 385 (463)
T KOG0270|consen 316 CRDPSNSGK-----EWKFDGEVEKVA-WDPHSENSFFVS--TDDGTVYYFDIRNP-GKPVWTLKAHDDEISGLSVNIQT- 385 (463)
T ss_pred ccCccccCc-----eEEeccceEEEE-ecCCCceeEEEe--cCCceEEeeecCCC-CCceeEEEeccCCcceEEecCCC-
Confidence 985322111 111334444443 555444333333 49999999999975 68999999999999999999874
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR 2459 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts 2459 (2548)
..+++|++.|+.|++|++.. ..++.+... .-.-+...|
T Consensus 386 -----p~~l~t~s~d~~Vklw~~~~-~~~~~v~~~------------------------------------~~~~~rl~c 423 (463)
T KOG0270|consen 386 -----PGLLSTASTDKVVKLWKFDV-DSPKSVKEH------------------------------------SFKLGRLHC 423 (463)
T ss_pred -----CcceeeccccceEEEEeecC-CCCcccccc------------------------------------cccccceee
Confidence 67999999999999999652 222211110 001122557
Q ss_pred EEEeCCC-CEEEEEeCCCcEEEEECCCCcEEE
Q 000054 2460 ISTVPNT-SLFLTGSKDGDVKLWDAKAAQLVY 2490 (2548)
Q Consensus 2460 LafSPdG-~~LaSGS~DGtIrIWDl~Tgell~ 2490 (2548)
.++.|+- -+++.||..+.++|||+.++..+.
T Consensus 424 ~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 424 FALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred cccCCCcceEEEecCccceEEEeecccChhHH
Confidence 7788865 466778888899999998876653
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.4e-12 Score=146.35 Aligned_cols=226 Identities=17% Similarity=0.209 Sum_probs=159.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCce-eEEEeccCCCCCCCCCCCCCeEEEEEcc--CCCEEEEEeCCCcEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKA-TATYGVLPAANVPPPYALASISALQFDH--YGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~-l~t~~~l~ghs~~~~~H~~~VtsVaFSP--dG~~LaSGS~DGtVrVW 2298 (2548)
+.|+.|+|++..+++-. |..|.+|+++.+.. +..+.. + ....|....++-+|+| +|+.+++. .|+++..|
T Consensus 126 i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~s-s----~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~ 198 (370)
T KOG1007|consen 126 INCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLS-S----ESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFW 198 (370)
T ss_pred eeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecc-c----ccccccceecccccCCCCccceEEEe-CCCcEEEE
Confidence 69999999999998765 88999999998765 333321 1 1223567788999998 68877765 58999999
Q ss_pred EcCCCcccccccCccceeccCCcccEEE--EcCCCC-EEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEc
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGs-lLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafs 2375 (2548)
|+++.++... .-..|...|.. |+|+.+ +|++|| +||.|+|||++.. ..++..+.+|...|++|.|+
T Consensus 199 D~RT~~~~~s-------I~dAHgq~vrdlDfNpnkq~~lvt~g---DdgyvriWD~R~t-k~pv~el~~HsHWvW~VRfn 267 (370)
T KOG1007|consen 199 DLRTMKKNNS-------IEDAHGQRVRDLDFNPNKQHILVTCG---DDGYVRIWDTRKT-KFPVQELPGHSHWVWAVRFN 267 (370)
T ss_pred Eccchhhhcc-------hhhhhcceeeeccCCCCceEEEEEcC---CCccEEEEeccCC-CccccccCCCceEEEEEEec
Confidence 9998764332 24567777764 777755 677777 9999999999974 67899999999999999999
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccc---cccccCCCCCCccCCCCCceEEEcccC
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINT---CAHADAQTGSGSKPGDQNGMLWYIPKA 2452 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~---~~vafSpdGk~v~s~D~sv~Iwdi~~g 2452 (2548)
|.+ .+++.+||.|..|.+|......+...+..- +........ .....-+|| +...+..
T Consensus 268 ~~h------dqLiLs~~SDs~V~Lsca~svSSE~qi~~~--~dese~e~~dseer~kpL~dg-----------~l~tyde 328 (370)
T KOG1007|consen 268 PEH------DQLILSGGSDSAVNLSCASSVSSEQQIEFE--DDESESEDEDSEERVKPLQDG-----------QLETYDE 328 (370)
T ss_pred Ccc------ceEEEecCCCceeEEEeccccccccccccc--cccccCcchhhHHhccccccc-----------ccccccc
Confidence 997 789999999999999996432222211110 000000000 000001111 1124467
Q ss_pred CCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECC
Q 000054 2453 HLGSVTRISTVP-NTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2453 H~~~VtsLafSP-dG~~LaSGS~DGtIrIWDl~ 2484 (2548)
|+..|++++|+. +.-+||+-|.||.+.|=.+.
T Consensus 329 hEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 329 HEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 999999999988 45567888999999876654
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-12 Score=156.91 Aligned_cols=220 Identities=13% Similarity=0.197 Sum_probs=162.3
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
.|++......|+++|+..+.|+|||+....+.+.+ ..|...|++|.++-...++|+++..|.|.+..+.+
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~l----------kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t 152 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFL----------KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKT 152 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhc----------cCCcceeEEEEecCCcceeEEeccCCcEEEEeccc
Confidence 34443345589999999999999999854443333 34679999999999999999999999999999988
Q ss_pred CcccccccCccceeccCCcccEEEEcCCCCEE-EEEeccCCCCeEEEEECCCCCCCc-ceeeeccCCCeEEEEEccCCCC
Q 000054 2303 GGRSNVRPMESCLCFSSHAMDVSYITSSGSVI-AAAGHSSNGINVVVWDTLAPPTSS-RASITCHEGGARSISVFDNDLG 2380 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~afSpdGslL-ATgG~SS~DGtVrIWDl~t~~~k~-v~sl~gHs~~VtSLafsP~dlg 2380 (2548)
+...... ..-.+..-+...+++..+.+ .++ +++|.|.+||+.. ..+ .+....|..+...|+|+|.+
T Consensus 153 ~~~tt~f-----~~~sgqsvRll~ys~skr~lL~~a---sd~G~VtlwDv~g--~sp~~~~~~~HsAP~~gicfspsn-- 220 (673)
T KOG4378|consen 153 KQKTTTF-----TIDSGQSVRLLRYSPSKRFLLSIA---SDKGAVTLWDVQG--MSPIFHASEAHSAPCRGICFSPSN-- 220 (673)
T ss_pred Cccccce-----ecCCCCeEEEeecccccceeeEee---ccCCeEEEEeccC--CCcccchhhhccCCcCcceecCCc--
Confidence 7543211 10112222233577776654 455 4999999999975 334 34556899999999999996
Q ss_pred CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEE
Q 000054 2381 SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRI 2460 (2548)
Q Consensus 2381 ~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsL 2460 (2548)
..+|++.|.|..|.+||++. .+....+ .-+.+...|
T Consensus 221 ----e~l~vsVG~Dkki~~yD~~s---~~s~~~l-------------------------------------~y~~Plstv 256 (673)
T KOG4378|consen 221 ----EALLVSVGYDKKINIYDIRS---QASTDRL-------------------------------------TYSHPLSTV 256 (673)
T ss_pred ----cceEEEecccceEEEeeccc---cccccee-------------------------------------eecCCccee
Confidence 88999999999999999652 2221111 134578899
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCC-CcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe
Q 000054 2461 STVPNTSLFLTGSKDGDVKLWDAKA-AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG 2526 (2548)
Q Consensus 2461 afSPdG~~LaSGS~DGtIrIWDl~T-gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG 2526 (2548)
+|.++|.+|+.|+..|.|..||++. ..++.++ ..|. +.|++++|-|.-
T Consensus 257 af~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~--------------sah~----~sVt~vafq~s~ 305 (673)
T KOG4378|consen 257 AFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR--------------SAHD----ASVTRVAFQPSP 305 (673)
T ss_pred eecCCceEEEeecCCceEEEEecccCCCCceEe--------------eecc----cceeEEEeeecc
Confidence 9999999999999999999999985 5566555 4555 346788887764
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-11 Score=155.48 Aligned_cols=294 Identities=14% Similarity=0.154 Sum_probs=205.3
Q ss_pred ccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCC--ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC
Q 000054 2216 TVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKD--KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL 2291 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg--~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~ 2291 (2548)
.+-||. |.++.|+|.+..|++++.|.++.+|..++. --+...+. | ...+..+.-.+..|+|+++.+++-+.
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRl--G---e~gg~a~GF~g~lw~~n~~~ii~~g~ 336 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRL--G---EVGGSAGGFWGGLWSPNSNVIIAHGR 336 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEe--e---cccccccceeeEEEcCCCCEEEEecc
Confidence 344565 899999999999999999999999998754 33333221 0 01123467899999999999999999
Q ss_pred CCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCC--CcceeeeccCC
Q 000054 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPT--SSRASITCHEG 2367 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~--k~v~sl~gHs~ 2367 (2548)
-|-.++|....... -.......||...|.. |+|.|.+++++| .|.+-+++-.-.... ..+..-+-|..
T Consensus 337 ~Gg~hlWkt~d~~~-----w~~~~~iSGH~~~V~dv~W~psGeflLsvs---~DQTTRlFa~wg~q~~wHEiaRPQiHGy 408 (764)
T KOG1063|consen 337 TGGFHLWKTKDKTF-----WTQEPVISGHVDGVKDVDWDPSGEFLLSVS---LDQTTRLFARWGRQQEWHEIARPQIHGY 408 (764)
T ss_pred cCcEEEEeccCccc-----eeeccccccccccceeeeecCCCCEEEEec---cccceeeecccccccceeeecccccccc
Confidence 99999998322110 0112237899999974 889999999997 899999987642111 12334456888
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCc-------------------cccCceeeee-------c----CC
Q 000054 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRY-------------------IATGKTKKHK-------H----SD 2417 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~-------------------l~TGk~l~tl-------~----~~ 2417 (2548)
.++|+++-+. ...+++|...+.+|+|+... +..+..+..+ . ..
T Consensus 409 Dl~c~~~vn~-------~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~ 481 (764)
T KOG1063|consen 409 DLTCLSFVNE-------DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNT 481 (764)
T ss_pred cceeeehccC-------CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccc
Confidence 9999999884 24899999999999999742 0001111000 0 00
Q ss_pred CC---------------------------------------CCCccccccccCCCCCCccCCCC-------CceEEEc--
Q 000054 2418 RG---------------------------------------GSSINTCAHADAQTGSGSKPGDQ-------NGMLWYI-- 2449 (2548)
Q Consensus 2418 ~~---------------------------------------~s~~~~~~vafSpdGk~v~s~D~-------sv~Iwdi-- 2449 (2548)
+. ........++.+|+|+++++..+ .+++|++
T Consensus 482 G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~ 561 (764)
T KOG1063|consen 482 GGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN 561 (764)
T ss_pred ccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc
Confidence 00 00112233567888887554433 3578874
Q ss_pred ------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE-EEecccccccccccCcccCCCCceeecEEEEEE
Q 000054 2450 ------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLV-YHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQV 2522 (2548)
Q Consensus 2450 ------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell-~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLaf 2522 (2548)
..+|.-.|+.++|+|||++|++.|.|.++.+|........ ..| ...+.|... |+++.|
T Consensus 562 W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~f-----------a~~k~HtRI----IWdcsW 626 (764)
T KOG1063|consen 562 WLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRF-----------ACLKAHTRI----IWDCSW 626 (764)
T ss_pred hhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhh-----------ccccccceE----EEEccc
Confidence 4689999999999999999999999999999998533221 111 124677644 566699
Q ss_pred cCCe--EEEEECCCcEEEEECCCC
Q 000054 2523 VSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2523 SPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
+|++ ++|+|.|.+|++|...++
T Consensus 627 ~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 627 SPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred CcccceeEEecCCceEEEEeccCc
Confidence 9999 999999999999999876
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-11 Score=160.21 Aligned_cols=209 Identities=16% Similarity=0.244 Sum_probs=165.5
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEE
Q 000054 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVV 2348 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrI 2348 (2548)
.|...-+.|+|.|+|.++++++.||.|++|+....... | .++..+...|.++..++..|+++. .+++|..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~---P----~ti~~~g~~v~~ia~~s~~f~~~s---~~~tv~~ 80 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE---P----ETIDISGELVSSIACYSNHFLTGS---EQNTVLR 80 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC---C----chhhccCceeEEEeecccceEEee---ccceEEE
Confidence 46788999999999999999999999999998755211 1 123336677777777788898884 9999999
Q ss_pred EECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccc
Q 000054 2349 WDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAH 2428 (2548)
Q Consensus 2349 WDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~v 2428 (2548)
|....+ ..-..+..-+-++++++|+.+ |.+++.||.|-.|++-+ ...+....++
T Consensus 81 y~fps~--~~~~iL~Rftlp~r~~~v~g~-------g~~iaagsdD~~vK~~~---~~D~s~~~~l-------------- 134 (933)
T KOG1274|consen 81 YKFPSG--EEDTILARFTLPIRDLAVSGS-------GKMIAAGSDDTAVKLLN---LDDSSQEKVL-------------- 134 (933)
T ss_pred eeCCCC--CccceeeeeeccceEEEEecC-------CcEEEeecCceeEEEEe---ccccchheee--------------
Confidence 998653 332233344568999999888 88999999999999999 4445555554
Q ss_pred ccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccC
Q 000054 2429 ADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRG 2508 (2548)
Q Consensus 2429 afSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~G 2508 (2548)
.+|+++|.+|.|+|.+.+||+.+-||.|+|||+.++.+.+++++......+
T Consensus 135 ----------------------rgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~------- 185 (933)
T KOG1274|consen 135 ----------------------RGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF------- 185 (933)
T ss_pred ----------------------cccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccc-------
Confidence 889999999999999999999999999999999999999888543333222
Q ss_pred CCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2509 FGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2509 H~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
-. ...+..++|+|+| ++..+.|++|++|+..+..
T Consensus 186 ~~---s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we 221 (933)
T KOG1274|consen 186 IL---SRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE 221 (933)
T ss_pred cc---cceeeeeeecCCCCeEEeeccCCeEEEEccCCce
Confidence 11 2346788999997 9999999999999987654
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-10 Score=137.74 Aligned_cols=238 Identities=26% Similarity=0.433 Sum_probs=178.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc-eeEEEeccCCCCCCCCCCCCCeEEEEE-ccCCC-EEEEEeC-CCcEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK-ATATYGVLPAANVPPPYALASISALQF-DHYGH-RFASAAL-DGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~-~l~t~~~l~ghs~~~~~H~~~VtsVaF-SPdG~-~LaSGS~-DGtVrV 2297 (2548)
+.++.+.+.+..++.++.|+.+.+|+...+. ....+.... ...+..+.+ ++++. .++..+. |+.+.+
T Consensus 68 i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 68 ITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLH---------DSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred EEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccC---------CCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 6888999999999999999999999999886 555553311 135777777 77777 5555444 999999
Q ss_pred EEcCC-CcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000054 2298 WQLEV-GGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2298 WDl~t-gk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
|+... .. ....+..|...|. .+++++..+++++ ..|+.+++|+... ...+..+.+|...|.+++|
T Consensus 139 ~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~ 206 (466)
T COG2319 139 WDLSTPGK--------LIRTLEGHSESVTSLAFSPDGKLLASGS--SLDGTIKLWDLRT--GKPLSTLAGHTDPVSSLAF 206 (466)
T ss_pred EEecCCCe--------EEEEEecCcccEEEEEECCCCCEEEecC--CCCCceEEEEcCC--CceEEeeccCCCceEEEEE
Confidence 99986 22 1233667777666 5899999888774 1399999999976 5678888889999999999
Q ss_pred ccCCCCCCCCCC-EEEEEeCCCcEEEEeCCccccCceee-eecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccC
Q 000054 2375 FDNDLGSGSVSP-LIVTGGKGGDVGIHDFRYIATGKTKK-HKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKA 2452 (2548)
Q Consensus 2375 sP~dlg~gs~g~-lLVSGS~DGtVrLWDLR~l~TGk~l~-tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~g 2452 (2548)
+|. +. .+++++.|+.|++||.+ .+..+. .+ .+
T Consensus 207 ~~~-------~~~~~~~~~~d~~i~~wd~~---~~~~~~~~~------------------------------------~~ 240 (466)
T COG2319 207 SPD-------GGLLIASGSSDGTIRLWDLS---TGKLLRSTL------------------------------------SG 240 (466)
T ss_pred cCC-------cceEEEEecCCCcEEEEECC---CCcEEeeec------------------------------------CC
Confidence 977 44 55556999999999843 444444 22 55
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcE-EEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEE
Q 000054 2453 HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQL-VYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLS 2529 (2548)
Q Consensus 2453 H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgel-l~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaS 2529 (2548)
|...+ -..|+|++.++++++.|+.+++||+..... +..+ .+|.. .|.++.|+|++ +++
T Consensus 241 ~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------------~~~~~----~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 241 HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--------------SGHSS----SVLSVAFSPDGKLLAS 301 (466)
T ss_pred CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--------------ecCCc----cEEEEEECCCCCEEEE
Confidence 66664 338999999999999999999999987665 3222 34533 35666899966 777
Q ss_pred EECCCcEEEEECCCCc
Q 000054 2530 CGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2530 GS~DGtIrIWDL~sg~ 2545 (2548)
++.|+.+++|++.+..
T Consensus 302 ~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 302 GSSDGTVRLWDLETGK 317 (466)
T ss_pred eeCCCcEEEEEcCCCc
Confidence 9999999999887653
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.2e-11 Score=144.74 Aligned_cols=211 Identities=20% Similarity=0.257 Sum_probs=152.8
Q ss_pred CCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCC-CCEEEEEeccC
Q 000054 2266 PPPYALASISALQFDH-YGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSS-GSVIAAAGHSS 2341 (2548)
Q Consensus 2266 ~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpd-GslLATgG~SS 2341 (2548)
...+|++.|..++|+| +...+|+|+.|.+|.||++-.+.... ...+....+.+|...|- .|+|. .+.++++|
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag--- 151 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-DLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG--- 151 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCccccc-CcccceEEEeecceeEEEEeecccchhhHhhcc---
Confidence 3457889999999999 67889999999999999997654322 23345677899998775 47764 46778876
Q ss_pred CCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCC
Q 000054 2342 NGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGS 2421 (2548)
Q Consensus 2342 ~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s 2421 (2548)
.|.+|.+|++.+ ++....+. |.+-|.++.|+.+ |.+++|.+.|+.|||||.| +++.+..-
T Consensus 152 ~Dn~v~iWnv~t--geali~l~-hpd~i~S~sfn~d-------Gs~l~TtckDKkvRv~dpr---~~~~v~e~------- 211 (472)
T KOG0303|consen 152 SDNTVSIWNVGT--GEALITLD-HPDMVYSMSFNRD-------GSLLCTTCKDKKVRVIDPR---RGTVVSEG------- 211 (472)
T ss_pred CCceEEEEeccC--CceeeecC-CCCeEEEEEeccC-------CceeeeecccceeEEEcCC---CCcEeeec-------
Confidence 799999999987 56666666 9999999999988 8899999999999999954 45554442
Q ss_pred CccccccccCCCCCCccCCCCCceEEEcccCCCC-CEEEEEEeCCCCEEEEEe---CCCcEEEEECCCCcEEEEeccccc
Q 000054 2422 SINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG-SVTRISTVPNTSLFLTGS---KDGDVKLWDAKAAQLVYHWSKLHE 2497 (2548)
Q Consensus 2422 ~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~-~VtsLafSPdG~~LaSGS---~DGtIrIWDl~Tgell~tL~~~Hs 2497 (2548)
.+|++ .-..+.|-.+|.++.||- .+..+-+||...-+.--.+
T Consensus 212 -----------------------------~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~----- 257 (472)
T KOG0303|consen 212 -----------------------------VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIAL----- 257 (472)
T ss_pred -----------------------------ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCccee-----
Confidence 34554 234556777888666653 3788999997653221111
Q ss_pred ccccccCcccCCCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCCCc
Q 000054 2498 RHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2498 ~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~sg~ 2545 (2548)
..+...++.. =--|+||. .++|-+|+.||.|.+.+..
T Consensus 258 ------~elDtSnGvl-----~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 258 ------QELDTSNGVL-----LPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ------EEeccCCceE-----EeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 0123333322 22467776 5688899999999998764
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-11 Score=144.09 Aligned_cols=230 Identities=19% Similarity=0.303 Sum_probs=155.5
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc-CCCcccc
Q 000054 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL-EVGGRSN 2307 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl-~tgk~i~ 2307 (2548)
|+..++|+.+.+.-|++||.-+|+....|+....-. ..-...+++|+|||.+|+.| ....|+++|+ +.|..-.
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~d-----e~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQD-----EYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCP 194 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHH-----hhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCc
Confidence 778899999999999999999999988886543111 12345689999999988765 5689999999 4443221
Q ss_pred cccCccceeccCCcccEE--EEcCCCC-EEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCC
Q 000054 2308 VRPMESCLCFSSHAMDVS--YITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSV 2384 (2548)
Q Consensus 2308 i~p~~s~~t~~gH~~~V~--afSpdGs-lLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~ 2384 (2548)
..+.. .+.-.+..+.+. +++|... .++.++ ....+-|+.-.. ..++..+-+|.++|+.+.|.++
T Consensus 195 vy~t~-~~~k~gq~giisc~a~sP~~~~~~a~gs---Y~q~~giy~~~~--~~pl~llggh~gGvThL~~~ed------- 261 (406)
T KOG2919|consen 195 VYTTV-TKGKFGQKGIISCFAFSPMDSKTLAVGS---YGQRVGIYNDDG--RRPLQLLGGHGGGVTHLQWCED------- 261 (406)
T ss_pred chhhh-hcccccccceeeeeeccCCCCcceeeec---ccceeeeEecCC--CCceeeecccCCCeeeEEeccC-------
Confidence 11110 000112233333 3777554 777775 556666665543 5678888899999999999999
Q ss_pred CCEEEEEe-CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCC-CEEE--E
Q 000054 2385 SPLIVTGG-KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG-SVTR--I 2460 (2548)
Q Consensus 2385 g~lLVSGS-~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~-~Vts--L 2460 (2548)
|+.|.+|+ .|..|-.||+|+ .+..+..+ ..|.+ .-.. .
T Consensus 262 Gn~lfsGaRk~dkIl~WDiR~--~~~pv~~L------------------------------------~rhv~~TNQRI~F 303 (406)
T KOG2919|consen 262 GNKLFSGARKDDKILCWDIRY--SRDPVYAL------------------------------------ERHVGDTNQRILF 303 (406)
T ss_pred cCeecccccCCCeEEEEeehh--ccchhhhh------------------------------------hhhccCccceEEE
Confidence 67888887 578999999985 12222221 22322 2222 3
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCC-CcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECC
Q 000054 2461 STVPNTSLFLTGSKDGDVKLWDAKA-AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGD 2533 (2548)
Q Consensus 2461 afSPdG~~LaSGS~DGtIrIWDl~T-gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~D 2533 (2548)
...|++++|++|+.||.|++||+++ |..+..+ ..|...+ ..++++|-- ++|++..
T Consensus 304 Dld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~--------------~~~sd~v----NgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 304 DLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT--------------GNYSDTV----NGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ecCCCCceeeccCCCccEEEEecCCCCCccccc--------------ccccccc----cceecCcccceeeeccCc
Confidence 4568999999999999999999997 6655443 3455433 455888887 5555543
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.6e-10 Score=134.42 Aligned_cols=233 Identities=24% Similarity=0.449 Sum_probs=170.7
Q ss_pred cCCCC-EEEEE-ECCCeEEEEEcCC-CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC-CCcEEEEEcCCC
Q 000054 2228 HPLRP-FFLVG-SSNTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DGTVCTWQLEVG 2303 (2548)
Q Consensus 2228 SPdG~-~LASG-S~DGsVrLWDl~t-g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-DGtVrVWDl~tg 2303 (2548)
++++. +++.. ..|+.+.+|+... ......+.. |...|..+.|+|++..+++++. |+.+++|++..+
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG----------HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG 188 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEEEEEec----------CcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC
Confidence 78887 55544 4499999999987 555555533 5588999999999998998886 999999999874
Q ss_pred cccccccCccceeccCCcccEEE--EcCCCC-EEEEEeccCCCCeEEEEECCCCCCCcce-eeeccCCCeEEEEEccCCC
Q 000054 2304 GRSNVRPMESCLCFSSHAMDVSY--ITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSSRA-SITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2304 k~i~i~p~~s~~t~~gH~~~V~a--fSpdGs-lLATgG~SS~DGtVrIWDl~t~~~k~v~-sl~gHs~~VtSLafsP~dl 2379 (2548)
... ..+.+|...|.. ++|++. .+++++ .|+.|++||... +.... .+.+|...+ ...|++.
T Consensus 189 ~~~--------~~~~~~~~~v~~~~~~~~~~~~~~~~~---~d~~i~~wd~~~--~~~~~~~~~~~~~~~-~~~~~~~-- 252 (466)
T COG2319 189 KPL--------STLAGHTDPVSSLAFSPDGGLLIASGS---SDGTIRLWDLST--GKLLRSTLSGHSDSV-VSSFSPD-- 252 (466)
T ss_pred ceE--------EeeccCCCceEEEEEcCCcceEEEEec---CCCcEEEEECCC--CcEEeeecCCCCcce-eEeECCC--
Confidence 322 235567777764 778887 444433 899999998873 55555 688888875 4478887
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR 2459 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts 2459 (2548)
+..+++++.|+.+++||++.... .+.. . .+|...|.+
T Consensus 253 -----~~~~~~~~~d~~~~~~~~~~~~~--~~~~-----------------------------------~-~~~~~~v~~ 289 (466)
T COG2319 253 -----GSLLASGSSDGTIRLWDLRSSSS--LLRT-----------------------------------L-SGHSSSVLS 289 (466)
T ss_pred -----CCEEEEecCCCcEEEeeecCCCc--EEEE-----------------------------------E-ecCCccEEE
Confidence 56888999999999999653111 1111 1 467889999
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEE-ECCCcE
Q 000054 2460 ISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSC-GGDGSV 2536 (2548)
Q Consensus 2460 LafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSG-S~DGtI 2536 (2548)
+.|+|++..+++++.|+.+++||..+........ ..+|.. .+..+.+.+++ ++.+ ..|+.+
T Consensus 290 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~------------~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~~ 353 (466)
T COG2319 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT------------LKGHEG----PVSSLSFSPDGSLLVSGGSDDGTI 353 (466)
T ss_pred EEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee------------ecccCC----ceEEEEECCCCCEEEEeecCCCcE
Confidence 9999999999989999999999998887766551 135554 34555674442 5544 688999
Q ss_pred EEEECCCCc
Q 000054 2537 KLIQLEDYQ 2545 (2548)
Q Consensus 2537 rIWDL~sg~ 2545 (2548)
++|++....
T Consensus 354 ~~~~~~~~~ 362 (466)
T COG2319 354 RLWDLRTGK 362 (466)
T ss_pred EeeecCCCc
Confidence 999987653
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.3e-11 Score=145.39 Aligned_cols=117 Identities=14% Similarity=0.198 Sum_probs=84.3
Q ss_pred CeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 000054 2219 NISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2219 gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVW 2298 (2548)
++.+-|+.|||...-++..+..|+++|||+.+++.+..+. +|.+.|.+..|+.||..+++++.|+.|+||
T Consensus 128 ~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~----------~h~d~vQSa~WseDG~llatscKdkqirif 197 (1012)
T KOG1445|consen 128 NVIVECLRFHPTADGILASGAHGSVYITDISTQKTAVELS----------GHTDKVQSADWSEDGKLLATSCKDKQIRIF 197 (1012)
T ss_pred ceEEEEeecccCcCceEEeccCceEEEEEcccCceeeccc----------CCchhhhccccccCCceEeeecCCcceEEe
Confidence 3457899999987767777778999999999998776653 366999999999999999999999999999
Q ss_pred EcCCCcccccccCccceeccCCcc----cEEEEcCCCCEEEEEecc-CCCCeEEEEECCC
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAM----DVSYITSSGSVIAAAGHS-SNGINVVVWDTLA 2353 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~----~V~afSpdGslLATgG~S-S~DGtVrIWDl~t 2353 (2548)
|-+... ...+...+|.+ .|.+.... ..|++.|+. -.-+.|++||++.
T Consensus 198 DPRa~~-------~piQ~te~H~~~rdsRv~w~Gn~-~rlisTGF~~~R~reV~~~Dtr~ 249 (1012)
T KOG1445|consen 198 DPRASM-------EPIQTTEGHGGMRDSRVLWAGNW-ERLISTGFTTKRIREVRAYDTRK 249 (1012)
T ss_pred CCccCC-------Cccccccccccchhheeeeccch-hhhhhcccchhhheeeeeeeccc
Confidence 998543 12233456653 33333222 244444421 1335789999875
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.1e-11 Score=150.07 Aligned_cols=265 Identities=13% Similarity=0.155 Sum_probs=186.9
Q ss_pred CCeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 000054 2218 ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCT 2297 (2548)
Q Consensus 2218 ~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrV 2297 (2548)
..|.+..++|-|||..|+.+..| .+.+||.+.|..+.++++ |.+.|.+++|+.||+++++|+.|+.|.+
T Consensus 11 ~~hci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKg----------HKDtVycVAys~dGkrFASG~aDK~VI~ 79 (1081)
T KOG1538|consen 11 AEHCINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKG----------HKDTVYCVAYAKDGKRFASGSADKSVII 79 (1081)
T ss_pred cccchheeEECCCCceEEEecCC-EEEEEeCCCccccccccc----------ccceEEEEEEccCCceeccCCCceeEEE
Confidence 34467889999999988876554 689999999998888754 6699999999999999999999999999
Q ss_pred EEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEc
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafs 2375 (2548)
|.-.-.+.. -..|.+.|.| |+|-.+.++++. =...-+|.... +.+...+ ....+.+.+|.
T Consensus 80 W~~klEG~L----------kYSH~D~IQCMsFNP~~h~LasCs----LsdFglWS~~q---K~V~K~k-ss~R~~~CsWt 141 (1081)
T KOG1538|consen 80 WTSKLEGIL----------KYSHNDAIQCMSFNPITHQLASCS----LSDFGLWSPEQ---KSVSKHK-SSSRIICCSWT 141 (1081)
T ss_pred eccccccee----------eeccCCeeeEeecCchHHHhhhcc----hhhccccChhh---hhHHhhh-hheeEEEeeec
Confidence 986533211 2357776665 888888999874 34566787653 2332221 24567888888
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-------ccCCCCCceEEE
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-------SKPGDQNGMLWY 2448 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-------v~s~D~sv~Iwd 2448 (2548)
.+ |++++.|-.||+|.+-+ ++|+....+..+++.. ...-.+.++|+... +...+.+...+.
T Consensus 142 nD-------GqylalG~~nGTIsiRN----k~gEek~~I~Rpgg~N-spiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~ 209 (1081)
T KOG1538|consen 142 ND-------GQYLALGMFNGTISIRN----KNGEEKVKIERPGGSN-SPIWSICWNPSSGEGRNDILAVADWGQTLSFYQ 209 (1081)
T ss_pred CC-------CcEEEEeccCceEEeec----CCCCcceEEeCCCCCC-CCceEEEecCCCCCCccceEEEEeccceeEEEE
Confidence 88 88999999999999876 3444433332233332 33344566665321 344444444443
Q ss_pred cc-------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEE
Q 000054 2449 IP-------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQ 2521 (2548)
Q Consensus 2449 i~-------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLa 2521 (2548)
+. +.-.-.-.|+.+.|+|.++..||.|+.+++|. +.|-.+.++ -... ..|+.++
T Consensus 210 LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTv--------------g~~D----~WIWtV~ 270 (1081)
T KOG1538|consen 210 LSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTV--------------GEQD----SWIWTVQ 270 (1081)
T ss_pred ecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeec--------------cccc----eeEEEEE
Confidence 21 11122345788889999999999999999997 456666655 1122 3467779
Q ss_pred EcCCe--EEEEECCCcEEEEECC
Q 000054 2522 VVSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2522 fSPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
..|++ ++.|+.||+|-.|++-
T Consensus 271 ~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 271 AKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EccCCceEEEEEccCeeehhhhH
Confidence 99999 8899999999998874
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2e-10 Score=140.36 Aligned_cols=249 Identities=12% Similarity=0.112 Sum_probs=168.0
Q ss_pred EEEEEEcCCC-CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLR-PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG-~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
|.++.|+|.. ..+.+.+.||+|++-|+.++..-..+..- .-.....++.|+.+...++.|+.=|...+||.
T Consensus 237 Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~--------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~ 308 (498)
T KOG4328|consen 237 VSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLD--------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDL 308 (498)
T ss_pred ccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcC--------ccceeeeeccccCCCccEEEeecccceEEEEe
Confidence 5788888854 57888999999999999876543333210 01256788899988888888888889999999
Q ss_pred CCCcccccccCccceeccCCcccEEE--EcCC-CCEEEEEeccCCCCeEEEEECCCCCCC--cceeeeccCCCeEEEEEc
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVSY--ITSS-GSVIAAAGHSSNGINVVVWDTLAPPTS--SRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpd-GslLATgG~SS~DGtVrIWDl~t~~~k--~v~sl~gHs~~VtSLafs 2375 (2548)
++++... ..+.-|...|.. ++|- ..++||++ .|++++|||++.-..+ ++.....|...|.+..|+
T Consensus 309 R~~~s~~-------~~~~lh~kKI~sv~~NP~~p~~laT~s---~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS 378 (498)
T KOG4328|consen 309 RTDGSEY-------ENLRLHKKKITSVALNPVCPWFLATAS---LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFS 378 (498)
T ss_pred ecCCccc-------hhhhhhhcccceeecCCCCchheeecc---cCcceeeeehhhhcCCCCcceecccccceeeeeEEc
Confidence 9876321 114456666653 6664 45778875 9999999999853233 244555799999999999
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEc-cc-CC
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYI-PK-AH 2453 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi-~~-gH 2453 (2548)
|.+ +. |+|.+.|..|+|||.. ++.... .| ...|.+- .. .|
T Consensus 379 Ps~------gt-l~TT~~D~~IRv~dss------~~sa~~---------------~p----------~~~I~Hn~~t~Rw 420 (498)
T KOG4328|consen 379 PSG------GT-LLTTCQDNEIRVFDSS------CISAKD---------------EP----------LGTIPHNNRTGRW 420 (498)
T ss_pred CCC------Cc-eEeeccCCceEEeecc------cccccC---------------Cc----------cceeeccCccccc
Confidence 995 55 9999999999999942 111110 00 0011100 01 12
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEE-
Q 000054 2454 LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSC- 2530 (2548)
Q Consensus 2454 ~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSG- 2530 (2548)
. .....+|+|+..++++|-.-..|-|+|-..++.+..+ |.....+...-.+|+|-+ +++|
T Consensus 421 l-T~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el----------------~~P~~~tI~~vn~~HP~~~~~~aG~ 483 (498)
T KOG4328|consen 421 L-TPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCEL----------------HDPESSTIPSVNEFHPMRDTLAAGG 483 (498)
T ss_pred c-cchhheeCCCccEEEEeccCcceeEEcCCCCEEeeec----------------cCccccccccceeecccccceeccC
Confidence 2 2335679999999999999999999999989888766 111111111223799977 5544
Q ss_pred ECCCcEEEEECCC
Q 000054 2531 GGDGSVKLIQLED 2543 (2548)
Q Consensus 2531 S~DGtIrIWDL~s 2543 (2548)
+..|.|.||--+.
T Consensus 484 ~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 484 NSSGKIYVFTNKK 496 (498)
T ss_pred CccceEEEEecCC
Confidence 5567888886443
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=8e-11 Score=143.70 Aligned_cols=201 Identities=16% Similarity=0.249 Sum_probs=154.8
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCC-EEEEEeccCCCCeEEEEE
Q 000054 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGS-VIAAAGHSSNGINVVVWD 2350 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGs-lLATgG~SS~DGtVrIWD 2350 (2548)
+.|++|.|+|....+++|+.||++++|.++......+ ...-+.+..-.-.+|.|+|. .++++| .....+.||
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~l----qS~~l~~fPi~~a~f~p~G~~~i~~s~---rrky~ysyD 286 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKL----QSIHLEKFPIQKAEFAPNGHSVIFTSG---RRKYLYSYD 286 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccChhh----eeeeeccCccceeeecCCCceEEEecc---cceEEEEee
Confidence 7899999999999999999999999999974321111 11112222223345899998 777876 788999999
Q ss_pred CCCCCCCcceeeeccC-CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccc
Q 000054 2351 TLAPPTSSRASITCHE-GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHA 2429 (2548)
Q Consensus 2351 l~t~~~k~v~sl~gHs-~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~va 2429 (2548)
+.+..-..+..+.++. ..+....++++ +++|+..|..|.|.+.. ..+++.+..+
T Consensus 287 le~ak~~k~~~~~g~e~~~~e~FeVShd-------~~fia~~G~~G~I~lLh---akT~eli~s~--------------- 341 (514)
T KOG2055|consen 287 LETAKVTKLKPPYGVEEKSMERFEVSHD-------SNFIAIAGNNGHIHLLH---AKTKELITSF--------------- 341 (514)
T ss_pred ccccccccccCCCCcccchhheeEecCC-------CCeEEEcccCceEEeeh---hhhhhhhhee---------------
Confidence 9875444556666665 46778888888 78999999999999988 5666666554
Q ss_pred cCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCC
Q 000054 2430 DAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGF 2509 (2548)
Q Consensus 2430 fSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH 2509 (2548)
.-.+.|..++|+.+++.|+..+.+|.|.+||++...+++++...
T Consensus 342 ----------------------KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~-------------- 385 (514)
T KOG2055|consen 342 ----------------------KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD-------------- 385 (514)
T ss_pred ----------------------eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec--------------
Confidence 14568899999999999999999999999999999999888311
Q ss_pred CCceeecEEEEEEcCCe--EEEEECCCcEEEEECCC
Q 000054 2510 GGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2510 ~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~s 2543 (2548)
+.| .-++++.+++| ||+||..|.|.|||..+
T Consensus 386 -G~v--~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 386 -GSV--HGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred -Ccc--ceeeeeecCCCceEEeccCcceEEEeccch
Confidence 111 12566888888 99999999999999764
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-10 Score=150.67 Aligned_cols=279 Identities=16% Similarity=0.237 Sum_probs=182.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCC-CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~t-g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
+.|+++||.++++|+|..||.|.+|.--. ...-.++. ....|.+.|.++.|+++|.+|++|+..|.+.+|.+
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t-------~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCT-------LLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQL 280 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccccccccce-------EEEecccccceeEEecCCceEeecccceEEEEEee
Confidence 58999999999999999999999997433 11111111 12346689999999999999999999999999999
Q ss_pred CCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCC-CCcceeeec--------cCCCe
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPP-TSSRASITC--------HEGGA 2369 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~-~k~v~sl~g--------Hs~~V 2369 (2548)
+++++. . ++.-...|. .++||+.+.+... .|+.|.+-....-. ...+..+.. ..+-.
T Consensus 281 ~T~~kq-f--------LPRLgs~I~~i~vS~ds~~~sl~~---~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~ 348 (792)
T KOG1963|consen 281 ETGKKQ-F--------LPRLGSPILHIVVSPDSDLYSLVL---EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLT 348 (792)
T ss_pred cCCCcc-c--------ccccCCeeEEEEEcCCCCeEEEEe---cCceEEEEeccchhhhhhccCccCCCccccccccccc
Confidence 998632 1 333344454 3899999988886 79999888763210 111222221 24556
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecC-----CCC--CCCccccccccCCCCCCccC---
Q 000054 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHS-----DRG--GSSINTCAHADAQTGSGSKP--- 2439 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~-----~~~--~s~~~~~~vafSpdGk~v~s--- 2439 (2548)
+.++++|. .+.++-.+..|.|.+||+ .+.+.+..+.. ..+ ........++.+..|.+.++
T Consensus 349 t~~~idpr-------~~~~vln~~~g~vQ~ydl---~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~ 418 (792)
T KOG1963|consen 349 TGVSIDPR-------TNSLVLNGHPGHVQFYDL---YTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEA 418 (792)
T ss_pred eeEEEcCC-------CCceeecCCCceEEEEec---cccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeee
Confidence 77888885 457888899999999995 33343333210 111 11122334444555555221
Q ss_pred -------C--CCCceEEE-------------cccCCCCCEEEEEEeCC--CCEEEEEeCCCcEEEEECCCCcEE------
Q 000054 2440 -------G--DQNGMLWY-------------IPKAHLGSVTRISTVPN--TSLFLTGSKDGDVKLWDAKAAQLV------ 2489 (2548)
Q Consensus 2440 -------~--D~sv~Iwd-------------i~~gH~~~VtsLafSPd--G~~LaSGS~DGtIrIWDl~Tgell------ 2489 (2548)
. ...++.|. +...|+..+...++.+. ....+|+|.||.++||-+..-+-+
T Consensus 419 ~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~ 498 (792)
T KOG1963|consen 419 RIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSN 498 (792)
T ss_pred eehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccc
Confidence 1 22346775 23468877766666553 237999999999999998433222
Q ss_pred EEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCC
Q 000054 2490 YHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2490 ~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~s 2543 (2548)
.+.... +. -|. ..++.++|+.|| ++++|.|++|.+||..+
T Consensus 499 W~c~~i---~s-------y~k----~~i~a~~fs~dGslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 499 WTCKAI---GS-------YHK----TPITALCFSQDGSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred eEEeee---ec-------ccc----CcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence 211100 00 122 234566899999 99999999999999987
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-10 Score=151.36 Aligned_cols=288 Identities=16% Similarity=0.177 Sum_probs=172.7
Q ss_pred ccccccccCCccccCCCCccCCeE--EEEEEEc-CCCCEEEEEECCCeEEEEEcCCCcee-EEEeccCCCCCCCCCCCCC
Q 000054 2198 ALGWETQDDFEDYVDPPATVENIS--TRAFSSH-PLRPFFLVGSSNTHIYLWEFGKDKAT-ATYGVLPAANVPPPYALAS 2273 (2548)
Q Consensus 2198 ~i~W~~~ed~e~~v~p~~tl~gV~--V~~VsfS-PdG~~LASGS~DGsVrLWDl~tg~~l-~t~~~l~ghs~~~~~H~~~ 2273 (2548)
..+|...... .+++..|. +..++.+ +++.+++|||.||+|++||...-..- .+++.- .+.......
T Consensus 1031 ~~gW~p~G~l------VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~----ltys~~~sr 1100 (1431)
T KOG1240|consen 1031 PPGWNPRGIL------VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSE----LTYSPEGSR 1100 (1431)
T ss_pred CCCCCccceE------eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeee----EEEeccCCc
Confidence 3446554444 34444443 3444444 45699999999999999998741110 111100 011112378
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcc-cEE---EEc-CCCC-EEEEEeccCCCCeEE
Q 000054 2274 ISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAM-DVS---YIT-SSGS-VIAAAGHSSNGINVV 2347 (2548)
Q Consensus 2274 VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~-~V~---afS-pdGs-lLATgG~SS~DGtVr 2347 (2548)
+.++..-+.++.+|.++.||.|.+.+++...... ...........+.. .+. ++. ..+. .++.+. ..+.|.
T Consensus 1101 ~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~-~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T---~~~~iv 1176 (1431)
T KOG1240|consen 1101 VEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSK-RVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYAT---DLSRIV 1176 (1431)
T ss_pred eEEEEeccCCCeEEEEcCCCeEEEEEcccccccc-ceeeeeecccccCCCceEEeecccccccceeEEEEE---eccceE
Confidence 9999999999999999999999999998621100 00001111122222 222 122 2333 566654 789999
Q ss_pred EEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccc
Q 000054 2348 VWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCA 2427 (2548)
Q Consensus 2348 IWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~ 2427 (2548)
.||+++...-.........|.|++++.+|. +.++++|...|.+-+||+|+ +..+...
T Consensus 1177 ~~D~r~~~~~w~lk~~~~hG~vTSi~idp~-------~~WlviGts~G~l~lWDLRF---~~~i~sw------------- 1233 (1431)
T KOG1240|consen 1177 SWDTRMRHDAWRLKNQLRHGLVTSIVIDPW-------CNWLVIGTSRGQLVLWDLRF---RVPILSW------------- 1233 (1431)
T ss_pred EecchhhhhHHhhhcCccccceeEEEecCC-------ceEEEEecCCceEEEEEeec---Cceeecc-------------
Confidence 999986322223333345688999999998 67999999999999999885 1222221
Q ss_pred cccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCC---CEEEEEe--CCCcEEEEECCCCcEEEEeccccccccc-
Q 000054 2428 HADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNT---SLFLTGS--KDGDVKLWDAKAAQLVYHWSKLHERHTF- 2501 (2548)
Q Consensus 2428 vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG---~~LaSGS--~DGtIrIWDl~Tgell~tL~~~Hs~hsf- 2501 (2548)
. .++..+|+.|..+|-. ...++++ ..+.|.+|++.+|.+-.++........+
T Consensus 1234 --------------------~--~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls 1291 (1431)
T KOG1240|consen 1234 --------------------E--HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILS 1291 (1431)
T ss_pred --------------------c--CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchh
Confidence 1 3355788888877732 4555554 4678999999999887777432111110
Q ss_pred -ccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2502 -LQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2502 -l~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
..|.-..-...-.+++.+.-..+++ +++||.|+.||.||....
T Consensus 1292 ~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1292 YALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred hhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 0111000001111334444455666 889999999999998753
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-10 Score=151.72 Aligned_cols=253 Identities=15% Similarity=0.186 Sum_probs=164.7
Q ss_pred EEEEEEcCCC-CEEEEEECCCeEEEEEcCCCce--eEEEeccCCCCCCCCCCCCCeEEEEEccC--CCEEEEEeCCCcEE
Q 000054 2222 TRAFSSHPLR-PFFLVGSSNTHIYLWEFGKDKA--TATYGVLPAANVPPPYALASISALQFDHY--GHRFASAALDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPdG-~~LASGS~DGsVrLWDl~tg~~--l~t~~~l~ghs~~~~~H~~~VtsVaFSPd--G~~LaSGS~DGtVr 2296 (2548)
+.|+.|+|.. .+++.|..+|.|.+||+..+.. ...+.. ....|...|+.+.|..+ +..|++++.||.|+
T Consensus 245 v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~------~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~ 318 (555)
T KOG1587|consen 245 VTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSA------LEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSIC 318 (555)
T ss_pred eeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccc------ccccCCcCeEEEEEeccCCCCceEEEecCCcEe
Confidence 7999999965 5677889999999999987655 222221 23457899999999764 45599999999999
Q ss_pred EEEcCCCccc-ccccCccce----ecc-CCcccEEEEcC-CCCEEEEEeccCCCCeEEEEECCCC--CC----Ccceeee
Q 000054 2297 TWQLEVGGRS-NVRPMESCL----CFS-SHAMDVSYITS-SGSVIAAAGHSSNGINVVVWDTLAP--PT----SSRASIT 2363 (2548)
Q Consensus 2297 VWDl~tgk~i-~i~p~~s~~----t~~-gH~~~V~afSp-dGslLATgG~SS~DGtVrIWDl~t~--~~----k~v~sl~ 2363 (2548)
.|+++.-... ......... ... .+......|.+ +-..+++|. ++|.|.--+.... .. +....+.
T Consensus 319 ~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGT---e~G~v~~~~r~g~~~~~~~~~~~~~~~~ 395 (555)
T KOG1587|consen 319 SWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGT---EEGKVYKGCRKGYTPAPEVSYKGHSTFI 395 (555)
T ss_pred eeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEc---CCcEEEEEeccCCccccccccccccccc
Confidence 9988743220 000000000 011 11122223443 445677764 8998877332211 11 2244666
Q ss_pred ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCC
Q 000054 2364 CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQN 2443 (2548)
Q Consensus 2364 gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~s 2443 (2548)
.|.+.|+++.++|-. ...+.+++ |.+|+||.-.. ....+..+
T Consensus 396 ~h~g~v~~v~~nPF~------~k~fls~g-DW~vriWs~~~--~~~Pl~~~----------------------------- 437 (555)
T KOG1587|consen 396 THIGPVYAVSRNPFY------PKNFLSVG-DWTVRIWSEDV--IASPLLSL----------------------------- 437 (555)
T ss_pred ccCcceEeeecCCCc------cceeeeec-cceeEeccccC--CCCcchhh-----------------------------
Confidence 889999999999873 44555655 99999999320 11111111
Q ss_pred ceEEEcccCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCc--EEEEecccccccccccCcccCCCCceeecEEEE
Q 000054 2444 GMLWYIPKAHLGSVTRISTVPNT-SLFLTGSKDGDVKLWDAKAAQ--LVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDI 2520 (2548)
Q Consensus 2444 v~Iwdi~~gH~~~VtsLafSPdG-~~LaSGS~DGtIrIWDl~Tge--ll~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsL 2520 (2548)
..+...|++++|+|.. ..|+++..||.|.+||+.... ++.+. .-+ . ...+.+
T Consensus 438 -------~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~--------------~~~-~---~~l~~~ 492 (555)
T KOG1587|consen 438 -------DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQ--------------KVC-S---PALTRV 492 (555)
T ss_pred -------hhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccc--------------ccc-c---ccccee
Confidence 4466679999999964 678888889999999997433 33222 111 1 234566
Q ss_pred EEcCCe--EEEEECCCcEEEEECCCCcc
Q 000054 2521 QVVSRG--FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2521 afSPdG--LaSGS~DGtIrIWDL~sg~l 2546 (2548)
.|++.| ++.|...|++.+|++.....
T Consensus 493 ~~s~~g~~lavGd~~G~~~~~~l~~~l~ 520 (555)
T KOG1587|consen 493 RWSPNGKLLAVGDANGTTHILKLSESLA 520 (555)
T ss_pred ecCCCCcEEEEecCCCcEEEEEcCchhh
Confidence 889988 88889999999999976543
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-11 Score=140.20 Aligned_cols=247 Identities=14% Similarity=0.204 Sum_probs=171.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.++.|..+++ |.+|..-|.|.+|++.+.+....++.+ |...|+.+.--|+ ..+.+-+.|+.+.+|++.
T Consensus 17 v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~---------g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia 85 (323)
T KOG0322|consen 17 VTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLF---------GRLFITNLQSIPN-DSLDTQGRDPLLILWTIA 85 (323)
T ss_pred heehhhccchh-hhcccccceEEEEEeecCccchhhhhh---------ccceeeceeecCC-cchhhcCCCceEEEEEcc
Confidence 46666656654 899999999999999998887776532 3477888888887 558899999999999987
Q ss_pred CCccccccc----------C-------cc--ceec--------------------------cCCcccEEEEc----CCCC
Q 000054 2302 VGGRSNVRP----------M-------ES--CLCF--------------------------SSHAMDVSYIT----SSGS 2332 (2548)
Q Consensus 2302 tgk~i~i~p----------~-------~s--~~t~--------------------------~gH~~~V~afS----pdGs 2332 (2548)
-+..+.+.. + .. .... .+..+.+.++. ....
T Consensus 86 ~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~ 165 (323)
T KOG0322|consen 86 YSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGST 165 (323)
T ss_pred CcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccce
Confidence 532111000 0 00 0000 01122344433 1234
Q ss_pred EEEEEeccCCCCeEEEEECCCCC--------CCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCc
Q 000054 2333 VIAAAGHSSNGINVVVWDTLAPP--------TSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRY 2404 (2548)
Q Consensus 2333 lLATgG~SS~DGtVrIWDl~t~~--------~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~ 2404 (2548)
.++.+|+ ++|.|.+||+.+.+ .+.+.....|.++|.++.|.+. ...=++|+.+..+..|++..
T Consensus 166 ~lllaGy--Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~-------~~rGisgga~dkl~~~Sl~~ 236 (323)
T KOG0322|consen 166 FLLLAGY--ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS-------CDRGISGGADDKLVMYSLNH 236 (323)
T ss_pred EEEEEec--cCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh-------hcCCcCCCccccceeeeecc
Confidence 5666674 79999999998631 1233445579999999999876 33456788888888998641
Q ss_pred cccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 000054 2405 IATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2405 l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
.++.+.... ..+-..-.|..+..-||++.+||+|.||.||||+.+
T Consensus 237 -s~gslq~~~----------------------------------e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswr 281 (323)
T KOG0322|consen 237 -STGSLQIRK----------------------------------EITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWR 281 (323)
T ss_pred -ccCcccccc----------------------------------eEEecCCCccceEEccCCcEEeecccCCcEEEEEec
Confidence 222211000 001123467788999999999999999999999999
Q ss_pred CCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEEC
Q 000054 2485 AAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2485 Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL 2541 (2548)
+.+++..+ +-|. ++|.+++|+|+- +|++|.|++|-+|++
T Consensus 282 tl~pLAVL--------------kyHs----agvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 282 TLNPLAVL--------------KYHS----AGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cCCchhhh--------------hhhh----cceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999866 5576 567888999994 889999999999986
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.2e-12 Score=152.82 Aligned_cols=289 Identities=16% Similarity=0.196 Sum_probs=203.4
Q ss_pred CCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc--CCCEEEEE
Q 000054 2214 PATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH--YGHRFASA 2289 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP--dG~~LaSG 2289 (2548)
...+..|. +..+.|...|..+++|+.|..|.+|||..+.....+. .+|...|..-.|-| +...++++
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~---------SGH~~NvfQaKFiP~s~d~ti~~~ 205 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFE---------SGHCNNVFQAKFIPFSGDRTIVTS 205 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccc---------cccccchhhhhccCCCCCcCceec
Confidence 33445544 7899999999999999999999999999988777763 35678899889988 46779999
Q ss_pred eCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCC-CCEEEEEeccCCCCeEEEEECCCCCCCcc-eeeecc
Q 000054 2290 ALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSS-GSVIAAAGHSSNGINVVVWDTLAPPTSSR-ASITCH 2365 (2548)
Q Consensus 2290 S~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpd-GslLATgG~SS~DGtVrIWDl~t~~~k~v-~sl~gH 2365 (2548)
+.||.|++=.+...+... ..+....|.+.|. ++-|+ ...|.++| .|+.|.-.|++....... ..-..+
T Consensus 206 s~dgqvr~s~i~~t~~~e-----~t~rl~~h~g~vhklav~p~sp~~f~S~g---eD~~v~~~Dlr~~~pa~~~~cr~~~ 277 (559)
T KOG1334|consen 206 SRDGQVRVSEILETGYVE-----NTKRLAPHEGPVHKLAVEPDSPKPFLSCG---EDAVVFHIDLRQDVPAEKFVCREAD 277 (559)
T ss_pred cccCceeeeeecccccee-----cceecccccCccceeeecCCCCCcccccc---cccceeeeeeccCCccceeeeeccC
Confidence 999999998764332111 1123455555554 34443 35677876 899999999986322222 222234
Q ss_pred CC---CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCce---eeee--cCCCCCCCccccccccCCCCC-C
Q 000054 2366 EG---GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKT---KKHK--HSDRGGSSINTCAHADAQTGS-G 2436 (2548)
Q Consensus 2366 s~---~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~---l~tl--~~~~~~s~~~~~~vafSpdGk-~ 2436 (2548)
.. ...+++..|.+ ...+++|+.|..+++||.|.+..... +.++ +.........+++++++.++. +
T Consensus 278 ~~~~v~L~~Ia~~P~n------t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl 351 (559)
T KOG1334|consen 278 EKERVGLYTIAVDPRN------TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL 351 (559)
T ss_pred CccceeeeeEecCCCC------ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce
Confidence 44 57889999985 67999999999999999886443311 1111 111224455677788885543 3
Q ss_pred -ccCCCCCceEEE---------------------cccCCCC--CEEEEE-EeCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 000054 2437 -SKPGDQNGMLWY---------------------IPKAHLG--SVTRIS-TVPNTSLFLTGSKDGDVKLWDAKAAQLVYH 2491 (2548)
Q Consensus 2437 -v~s~D~sv~Iwd---------------------i~~gH~~--~VtsLa-fSPdG~~LaSGS~DGtIrIWDl~Tgell~t 2491 (2548)
+...|..++++. +++||.. .|.++- |-|...|+++||.-|.|.||+-.+++.+..
T Consensus 352 LaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~ 431 (559)
T KOG1334|consen 352 LASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRF 431 (559)
T ss_pred eeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHH
Confidence 444444555553 2567865 566765 568889999999999999999999998875
Q ss_pred ecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCC
Q 000054 2492 WSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2492 L~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~s 2543 (2548)
+ .|-.. +|.|+.-+|.- |||+|-|..||||...+
T Consensus 432 M--------------egDr~----VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 432 M--------------EGDRH----VVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred h--------------hcccc----eEeccCCCCCCchhhccCCccceeeecCCc
Confidence 5 23222 36777888887 89999999999998743
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-11 Score=164.38 Aligned_cols=204 Identities=18% Similarity=0.286 Sum_probs=157.2
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWD 2299 (2548)
|+.+.|++... +||+|+.||.|.|||+.+-+...++. ...-.+.|.+++|+. ..+.|++++.+|.+.|||
T Consensus 119 V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~--------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWD 190 (1049)
T KOG0307|consen 119 VLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG--------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWD 190 (1049)
T ss_pred eeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC--------CCCCcccceEeccchhhhHHhhccCCCCCceecc
Confidence 68899999765 99999999999999998755443332 111247899999997 477899999999999999
Q ss_pred cCCCcccccccCccceeccCCcc----cEEEEcCCCC-EEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAM----DVSYITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~----~V~afSpdGs-lLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
++..+.+- .+..+.. .+..|+|+.. .++++..+...-.|.+||+|.. ..+++.+++|..+|.++.|
T Consensus 191 lr~~~pii--------~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a-ssP~k~~~~H~~GilslsW 261 (1049)
T KOG0307|consen 191 LRKKKPII--------KLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA-SSPLKILEGHQRGILSLSW 261 (1049)
T ss_pred ccCCCccc--------ccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc-CCchhhhcccccceeeecc
Confidence 99664221 1222322 2335888764 4555532213347999999964 6678889999999999999
Q ss_pred ccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000054 2375 FDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
++.| ..+++|++.|+.|.+|+ ..+|+.+..+ ....
T Consensus 262 c~~D------~~lllSsgkD~~ii~wN---~~tgEvl~~~------------------------------------p~~~ 296 (1049)
T KOG0307|consen 262 CPQD------PRLLLSSGKDNRIICWN---PNTGEVLGEL------------------------------------PAQG 296 (1049)
T ss_pred CCCC------chhhhcccCCCCeeEec---CCCceEeeec------------------------------------CCCC
Confidence 9996 78999999999999999 7778877776 3456
Q ss_pred CCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCc
Q 000054 2455 GSVTRISTVPNTS-LFLTGSKDGDVKLWDAKAAQ 2487 (2548)
Q Consensus 2455 ~~VtsLafSPdG~-~LaSGS~DGtIrIWDl~Tge 2487 (2548)
+++..+.|+|... .++.++.||.|-|+.+..+.
T Consensus 297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 7899999999665 88888999999999997654
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.1e-12 Score=159.45 Aligned_cols=264 Identities=17% Similarity=0.270 Sum_probs=186.6
Q ss_pred CccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000054 2215 ATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2215 ~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
..+.+|. |.|+.|...|.++++|+.|..|+||..+++.++..+++ |.+.|+.++.+.+..++++++.|
T Consensus 184 krLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG----------hs~ditdlavs~~n~~iaaaS~D 253 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRG----------HSGDITDLAVSSNNTMIAAASND 253 (1113)
T ss_pred HHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCC----------CccccchhccchhhhhhhhcccC
Confidence 3455665 78999999999999999999999999999988887643 56999999999999999999999
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCC-cceeeec-cCCC
Q 000054 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTS-SRASITC-HEGG 2368 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k-~v~sl~g-Hs~~ 2368 (2548)
..|++|.+..+..+. .+.+|++.|++ |+|-. +. +.||++++||.+-.... .-..... ..+.
T Consensus 254 ~vIrvWrl~~~~pvs--------vLrghtgavtaiafsP~~----ss---s~dgt~~~wd~r~~~~~y~prp~~~~~~~~ 318 (1113)
T KOG0644|consen 254 KVIRVWRLPDGAPVS--------VLRGHTGAVTAIAFSPRA----SS---SDDGTCRIWDARLEPRIYVPRPLKFTEKDL 318 (1113)
T ss_pred ceEEEEecCCCchHH--------HHhccccceeeeccCccc----cC---CCCCceEeccccccccccCCCCCCcccccc
Confidence 999999999886443 37899999986 66643 32 48999999998721110 1011111 1244
Q ss_pred eEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCC-CC--ccCCCCCce
Q 000054 2369 ARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTG-SG--SKPGDQNGM 2445 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdG-k~--v~s~D~sv~ 2445 (2548)
+.++.+... +.-+.||+.|+.-..|.+.++.-......+ +..+.+- .+ .+-.+....
T Consensus 319 ~~s~~~~~~-------~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif-------------~t~ssd~~~~~~~ar~~~~~~ 378 (1113)
T KOG0644|consen 319 VDSILFENN-------GDRFLTGSRDGEARNHEFEQLAWRSNLLIF-------------VTRSSDLSSIVVTARNDHRLC 378 (1113)
T ss_pred eeeeecccc-------ccccccccCCcccccchhhHhhhhccceEE-------------EeccccccccceeeeeeeEee
Confidence 555555444 678999999999999986542211111111 1111111 11 233334456
Q ss_pred EEEcc--------cCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeec
Q 000054 2446 LWYIP--------KAHLGSVTRISTVP-NTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAG 2516 (2548)
Q Consensus 2446 Iwdi~--------~gH~~~VtsLafSP-dG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~ 2516 (2548)
+|+.. .+|...+..+.++| +.+...+++.||...|||+-.|.+++.+ +.||+..+
T Consensus 379 vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y-------------~~gh~kl~--- 442 (1113)
T KOG0644|consen 379 VWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHY-------------FIGHGKLV--- 442 (1113)
T ss_pred eeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceee-------------ecccceee---
Confidence 67643 46889999999999 5566778899999999999999998877 36676433
Q ss_pred EEEEEEcCCe--EEEEECCCcEEEEEC
Q 000054 2517 VTDIQVVSRG--FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2517 VtsLafSPdG--LaSGS~DGtIrIWDL 2541 (2548)
+.+||++| ++....-|.+.|...
T Consensus 443 --d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 443 --DGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred --ccccCCCCceEecCCCCCceEEecc
Confidence 44899998 554444567776654
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.7e-11 Score=138.77 Aligned_cols=279 Identities=11% Similarity=0.075 Sum_probs=178.9
Q ss_pred EEEEEEcC----CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC----CCEEEEEeCCC
Q 000054 2222 TRAFSSHP----LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY----GHRFASAALDG 2293 (2548)
Q Consensus 2222 V~~VsfSP----dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd----G~~LaSGS~DG 2293 (2548)
+..++|++ +...+++......+.||+......+..+..... ..|.+.-..++|.-+ ..++|.|+.-|
T Consensus 41 I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D-----~d~~Esfytcsw~yd~~~~~p~la~~G~~G 115 (385)
T KOG1034|consen 41 IFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYAD-----EDHDESFYTCSWSYDSNTGNPFLAAGGYLG 115 (385)
T ss_pred cceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccC-----CCCCcceEEEEEEecCCCCCeeEEeeccee
Confidence 44555543 333444444456788998875433333322111 125577888999753 56889999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCC-CEEEEEeccCCCCeEEEEECCCCCCCcceee---eccCC
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSG-SVIAAAGHSSNGINVVVWDTLAPPTSSRASI---TCHEG 2367 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdG-slLATgG~SS~DGtVrIWDl~t~~~k~v~sl---~gHs~ 2367 (2548)
.|+|.|+.+++... .+.+|...|.. +.|+. ++++++ |.|..|++|++++ ..++..+ .||.+
T Consensus 116 vIrVid~~~~~~~~--------~~~ghG~sINeik~~p~~~qlvls~---SkD~svRlwnI~~--~~Cv~VfGG~egHrd 182 (385)
T KOG1034|consen 116 VIRVIDVVSGQCSK--------NYRGHGGSINEIKFHPDRPQLVLSA---SKDHSVRLWNIQT--DVCVAVFGGVEGHRD 182 (385)
T ss_pred EEEEEecchhhhcc--------ceeccCccchhhhcCCCCCcEEEEe---cCCceEEEEeccC--CeEEEEecccccccC
Confidence 99999999876432 36788888774 55654 677776 5999999999987 5676555 47999
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCc--cCCCCCce
Q 000054 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGS--KPGDQNGM 2445 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v--~s~D~sv~ 2445 (2548)
.|.++.|+++ +..++++|.|.++++|++.. .+....+ .....+++++..- -.......
T Consensus 183 eVLSvD~~~~-------gd~i~ScGmDhslk~W~l~~---~~f~~~l----------E~s~~~~~~~t~~pfpt~~~~fp 242 (385)
T KOG1034|consen 183 EVLSVDFSLD-------GDRIASCGMDHSLKLWRLNV---KEFKNKL----------ELSITYSPNKTTRPFPTPKTHFP 242 (385)
T ss_pred cEEEEEEcCC-------CCeeeccCCcceEEEEecCh---hHHhhhh----------hhhcccCCCCccCcCCccccccc
Confidence 9999999999 78999999999999999642 1111111 1223455554431 11111122
Q ss_pred EEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC-CCcEEEEecccccccccccCcccCCCCceeecEEEE--EE
Q 000054 2446 LWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK-AAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDI--QV 2522 (2548)
Q Consensus 2446 Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~-Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsL--af 2522 (2548)
.+.....|...|-|+.| -|+++++=|-++.|..|... -++.++..+......+ .-++-+.-.+.++-+ +|
T Consensus 243 ~fst~diHrnyVDCvrw--~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~T-----i~~~~~~~~c~iWfirf~~ 315 (385)
T KOG1034|consen 243 DFSTTDIHRNYVDCVRW--FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATT-----ILGEFDYPMCDIWFIRFAF 315 (385)
T ss_pred cccccccccchHHHHHH--HhhheeecccCceEEEEecchhhhhhhccCCCcccee-----eeeEeccCccceEEEEEee
Confidence 22244679999999998 47899999999999999873 2333322211111111 112222112334444 45
Q ss_pred cCCe--EEEEECCCcEEEEECCCCc
Q 000054 2523 VSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2523 SPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+|-+ ||.|...|+|.+|||++..
T Consensus 316 d~~~~~la~gnq~g~v~vwdL~~~e 340 (385)
T KOG1034|consen 316 DPWQKMLALGNQSGKVYVWDLDNNE 340 (385)
T ss_pred cHHHHHHhhccCCCcEEEEECCCCC
Confidence 5555 8899999999999998753
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.7e-11 Score=148.77 Aligned_cols=251 Identities=18% Similarity=0.233 Sum_probs=166.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCC-----CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGK-----DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~t-----g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVr 2296 (2548)
++.+.|+|..+.|++++.||.+.+|++.. ...+..+-.+. +|.++|.|++..+++..+++|+.||+|+
T Consensus 297 ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfr-------aH~gPVl~v~v~~n~~~~ysgg~Dg~I~ 369 (577)
T KOG0642|consen 297 IRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFR-------AHEGPVLCVVVPSNGEHCYSGGIDGTIR 369 (577)
T ss_pred hhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEe-------cccCceEEEEecCCceEEEeeccCceee
Confidence 68899999999999999999999999942 11222222222 3669999999999999999999999999
Q ss_pred EEEcCCCccc--ccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEE
Q 000054 2297 TWQLEVGGRS--NVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSI 2372 (2548)
Q Consensus 2297 VWDl~tgk~i--~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSL 2372 (2548)
.|++...... ...+.....++.||...|+ +++.....|+++. .||+|++|+.... ..+........+.-.++
T Consensus 370 ~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs---~DgTvr~w~~~~~-~~~~f~~~~e~g~Plsv 445 (577)
T KOG0642|consen 370 CWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCS---SDGTVRLWEPTEE-SPCTFGEPKEHGYPLSV 445 (577)
T ss_pred eeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeec---CCceEEeeccCCc-CccccCCccccCCcceE
Confidence 9987522100 0112223356889999986 4777777788874 8999999998642 11222222333444556
Q ss_pred EEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCC---CCCCccccccccCCCCCC--ccCCCCCceEE
Q 000054 2373 SVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDR---GGSSINTCAHADAQTGSG--SKPGDQNGMLW 2447 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~---~~s~~~~~~vafSpdGk~--v~s~D~sv~Iw 2447 (2548)
.+-... -...++...-+.-.+.| +.++..++.+.... ....+.+..+...|++.. .+..++.++++
T Consensus 446 d~~ss~------~a~~~~s~~~~~~~~~~---~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~ 516 (577)
T KOG0642|consen 446 DRTSSR------PAHSLASFRFGYTSIDD---MEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFF 516 (577)
T ss_pred eeccch------hHhhhhhcccccccchh---hhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecc
Confidence 554331 11233333333333333 44455544442221 122234445556666544 55666777777
Q ss_pred Ec--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2448 YI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2448 di--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
+. ..+|...++++++.|+|.+|++|+.||.+++|.+....++...
T Consensus 517 dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es 569 (577)
T KOG0642|consen 517 DNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLES 569 (577)
T ss_pred cccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecc
Confidence 63 3468899999999999999999999999999999877777644
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-10 Score=133.03 Aligned_cols=249 Identities=14% Similarity=0.180 Sum_probs=163.6
Q ss_pred EEEEEEc--CC-CCEEEEEEC----CCeEEEEEcC--CCceeEEEeccCCCCCCCCCCCCCeEEEEEccCC-----CEEE
Q 000054 2222 TRAFSSH--PL-RPFFLVGSS----NTHIYLWEFG--KDKATATYGVLPAANVPPPYALASISALQFDHYG-----HRFA 2287 (2548)
Q Consensus 2222 V~~VsfS--Pd-G~~LASGS~----DGsVrLWDl~--tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG-----~~La 2287 (2548)
..++.|+ |+ +.+||.|+- .+.|.|-.++ +++.+.. ....|.-+++.+.|.|+. .+||
T Consensus 47 lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~---------a~fd~~YP~tK~~wiPd~~g~~pdlLA 117 (364)
T KOG0290|consen 47 LYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED---------ANFDHPYPVTKLMWIPDSKGVYPDLLA 117 (364)
T ss_pred eeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc---------CCCCCCCCccceEecCCccccCcchhh
Confidence 3455555 32 346777753 4566666655 2332222 123366789999999975 3566
Q ss_pred EEeCCCcEEEEEcCCCcc-cccccCccceeccCCcccEEEEcC---CCCEEEEEeccCCCCeEEEEECCCC-CCCcceee
Q 000054 2288 SAALDGTVCTWQLEVGGR-SNVRPMESCLCFSSHAMDVSYITS---SGSVIAAAGHSSNGINVVVWDTLAP-PTSSRASI 2362 (2548)
Q Consensus 2288 SGS~DGtVrVWDl~tgk~-i~i~p~~s~~t~~gH~~~V~afSp---dGslLATgG~SS~DGtVrIWDl~t~-~~k~v~sl 2362 (2548)
|++ -.+|+|.+..... ...........-..+..++++|.. +-++|.+. |-|-+..|||+..+ .+.....+
T Consensus 118 Ts~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtS---SiDTTCTiWdie~~~~~~vkTQL 192 (364)
T KOG0290|consen 118 TSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTS---SIDTTCTIWDIETGVSGTVKTQL 192 (364)
T ss_pred ccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEee---cccCeEEEEEEeeccccceeeEE
Confidence 554 4899999974321 110000000112233445665543 45777776 59999999999874 23345567
Q ss_pred eccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCC
Q 000054 2363 TCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQ 2442 (2548)
Q Consensus 2363 ~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~ 2442 (2548)
-+|...|..|+|.... -+++++.|.||.||+||+|.+.-...+..-
T Consensus 193 IAHDKEV~DIaf~~~s------~~~FASvgaDGSvRmFDLR~leHSTIIYE~---------------------------- 238 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGS------RDVFASVGADGSVRMFDLRSLEHSTIIYED---------------------------- 238 (364)
T ss_pred EecCcceeEEEeccCc------cceEEEecCCCcEEEEEecccccceEEecC----------------------------
Confidence 7999999999998863 569999999999999998853222221110
Q ss_pred CceEEEcccCCCCCEEEEEEeC-CCCEEEEEeCCC-cEEEEECCC-CcEEEEecccccccccccCcccCCCCceeecEEE
Q 000054 2443 NGMLWYIPKAHLGSVTRISTVP-NTSLFLTGSKDG-DVKLWDAKA-AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTD 2519 (2548)
Q Consensus 2443 sv~Iwdi~~gH~~~VtsLafSP-dG~~LaSGS~DG-tIrIWDl~T-gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vts 2519 (2548)
.....+...++|++ |-+++||-..|. .|.|-|++. ..++.+ +++|.+.| ..
T Consensus 239 --------p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~--------------L~~H~a~V----Ng 292 (364)
T KOG0290|consen 239 --------PSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR--------------LRNHQASV----NG 292 (364)
T ss_pred --------CCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh--------------hhcCcccc----cc
Confidence 11245778889988 457888876654 799999985 344443 48998655 55
Q ss_pred EEEcCCe---EEEEECCCcEEEEECCCC
Q 000054 2520 IQVVSRG---FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2520 LafSPdG---LaSGS~DGtIrIWDL~sg 2544 (2548)
|+|.|.. |.|||+|..+-+||+..-
T Consensus 293 IaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 293 IAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred eEecCCCCceeeecCCcceEEEEecccc
Confidence 6999987 999999999999999753
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=143.15 Aligned_cols=250 Identities=16% Similarity=0.144 Sum_probs=165.1
Q ss_pred cCCCCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc--CCCEE
Q 000054 2211 VDPPATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH--YGHRF 2286 (2548)
Q Consensus 2211 v~p~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP--dG~~L 2286 (2548)
+...+.+.||. |.|+.|+.+|.+|++|+.|-.+.|||.-..+.+..+. .+|.+.|.++.|-| +.+.+
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~---------TgHtaNIFsvKFvP~tnnriv 110 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS---------TGHTANIFSVKFVPYTNNRIV 110 (758)
T ss_pred cchhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee---------cccccceeEEeeeccCCCeEE
Confidence 44456778887 9999999999999999999999999998777777653 46789999999999 46789
Q ss_pred EEEeCCCcEEEEEcCCCccc--ccccCccceeccCCcccEE--EEcCCC-CEEEEEeccCCCCeEEEEECCCCCCCccee
Q 000054 2287 ASAALDGTVCTWQLEVGGRS--NVRPMESCLCFSSHAMDVS--YITSSG-SVIAAAGHSSNGINVVVWDTLAPPTSSRAS 2361 (2548)
Q Consensus 2287 aSGS~DGtVrVWDl~tgk~i--~i~p~~s~~t~~gH~~~V~--afSpdG-slLATgG~SS~DGtVrIWDl~t~~~k~v~s 2361 (2548)
++|+.|..|+++|+...+.. .-....+..++..|...|. +..|++ +.+.+++ .||+|+-+|++.+ ..+...
T Consensus 111 ~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsas---EDGtirQyDiREp-h~c~p~ 186 (758)
T KOG1310|consen 111 LSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSAS---EDGTIRQYDIREP-HVCNPD 186 (758)
T ss_pred EeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEec---CCcceeeecccCC-ccCCcc
Confidence 99999999999999753211 1122234455677777665 345666 7788875 9999999999864 222222
Q ss_pred ee---------ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcc----cccc
Q 000054 2362 IT---------CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSIN----TCAH 2428 (2548)
Q Consensus 2362 l~---------gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~----~~~v 2428 (2548)
.. ..--...|+..+|.+ ..+|++|+.|-..++||.|. .+..+........+. -+..
T Consensus 187 ~~~~~~l~ny~~~lielk~ltisp~r------p~~laVGgsdpfarLYD~Rr-----~lks~~s~~~~~~~pp~~~~cv~ 255 (758)
T KOG1310|consen 187 EDCPSILVNYNPQLIELKCLTISPSR------PYYLAVGGSDPFARLYDRRR-----VLKSFRSDGTMNTCPPKDCRCVR 255 (758)
T ss_pred ccccHHHHHhchhhheeeeeeecCCC------CceEEecCCCchhhhhhhhh-----hccCCCCCccccCCCCcccchhh
Confidence 21 122356788999986 78999999999999999663 222221111111110 1222
Q ss_pred ccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2429 ADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2429 afSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
-|+|.+.. ...++... --..++-++|+|+|.-|+..-..-.|+++|+..++....+
T Consensus 256 yf~p~hlk--n~~gn~~~------~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 256 YFSPGHLK--NSQGNLDR------YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred eecCcccc--Cccccccc------ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 33443321 11111000 0113566889999866555444458999999876654433
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-10 Score=149.01 Aligned_cols=266 Identities=16% Similarity=0.205 Sum_probs=171.8
Q ss_pred cccccCCccccCCCCccCCeEEEEEEEcCCCCEEEEEECCCeEEEEEcC-----CCceeEEEeccCCCCCCCCCCCCCeE
Q 000054 2201 WETQDDFEDYVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFG-----KDKATATYGVLPAANVPPPYALASIS 2275 (2548)
Q Consensus 2201 W~~~ed~e~~v~p~~tl~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~-----tg~~l~t~~~l~ghs~~~~~H~~~Vt 2275 (2548)
|+....+..|-.-.....+|+-.++--.-|..++++|+.||.||||+-- +.+.+.....+.+.. +.. .+.=.
T Consensus 1093 ~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~-~~~--r~~~~ 1169 (1387)
T KOG1517|consen 1093 WEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQL-PGA--RGTGL 1169 (1387)
T ss_pred cccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccC-ccC--CCCCe
Confidence 4433333333333333334433333323456789999999999999743 234445554444432 111 12225
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcC---CCCEEEEEeccCCCCeEEEEECC
Q 000054 2276 ALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITS---SGSVIAAAGHSSNGINVVVWDTL 2352 (2548)
Q Consensus 2276 sVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSp---dGslLATgG~SS~DGtVrIWDl~ 2352 (2548)
-+.|.....+|+++|.-..|+|||........-.|. +....++++++ .|+.|++|- .||.|++||.+
T Consensus 1170 v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~-------~s~t~vTaLS~~~~~gn~i~AGf---aDGsvRvyD~R 1239 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY-------GSSTLVTALSADLVHGNIIAAGF---ADGSVRVYDRR 1239 (1387)
T ss_pred eeehhhhCCeEEecCCeeEEEEEecccceeEeeccc-------CCCccceeecccccCCceEEEee---cCCceEEeecc
Confidence 577888666677777689999999987654433322 23344555443 478888875 79999999999
Q ss_pred CCCCC-cceeeeccCCC--eEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccc
Q 000054 2353 APPTS-SRASITCHEGG--ARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHA 2429 (2548)
Q Consensus 2353 t~~~k-~v~sl~gHs~~--VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~va 2429 (2548)
.+... .+...+.|+.. |..+.+.+.. -..|++|+.||.|++||+|+. ......+...+... ....+.+.
T Consensus 1240 ~a~~ds~v~~~R~h~~~~~Iv~~slq~~G------~~elvSgs~~G~I~~~DlR~~-~~e~~~~iv~~~~y-Gs~lTal~ 1311 (1387)
T KOG1517|consen 1240 MAPPDSLVCVYREHNDVEPIVHLSLQRQG------LGELVSGSQDGDIQLLDLRMS-SKETFLTIVAHWEY-GSALTALT 1311 (1387)
T ss_pred cCCccccceeecccCCcccceeEEeecCC------CcceeeeccCCeEEEEecccC-cccccceeeecccc-Cccceeee
Confidence 76544 46777789887 9999998873 227999999999999999952 22222221111100 11245667
Q ss_pred cCCCCCCccCCC-CCceEEEcc--------------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 000054 2430 DAQTGSGSKPGD-QNGMLWYIP--------------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQ 2487 (2548)
Q Consensus 2430 fSpdGk~v~s~D-~sv~Iwdi~--------------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tge 2487 (2548)
.++...+++++. +.++||++. ....+.+.|++|||.--++|+|+.|.+|.||....++
T Consensus 1312 VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1312 VHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eccCCCeeeecCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 777777755555 778899842 1235678999999999999999999999999876543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-10 Score=142.00 Aligned_cols=201 Identities=19% Similarity=0.219 Sum_probs=143.3
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
.+++|+.+|..+++|+.||++|||++.....+... ..|.+.|.++.|+|||++|++-+.| ..+||++++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e----------~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~ 216 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE----------IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNT 216 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh----------HhhcCccccceeCCCCcEEEEecCC-ceEEEEecc
Confidence 78889999999999999999999998765544332 2255899999999999999999999 999999999
Q ss_pred CcccccccCccceeccCCcc-cEEEEcCCC---CEEEEEeccCCCCeEEEEECCCCCCC---cceeeeccCCCeEEEEEc
Q 000054 2303 GGRSNVRPMESCLCFSSHAM-DVSYITSSG---SVIAAAGHSSNGINVVVWDTLAPPTS---SRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~-~V~afSpdG---slLATgG~SS~DGtVrIWDl~t~~~k---~v~sl~gHs~~VtSLafs 2375 (2548)
|..+..... +.+... .-+.|+.++ .+.+.+.. ...+.|+.||+..-.+. ...........|.+++++
T Consensus 217 g~~~a~~t~-----~~k~~~~~~cRF~~d~~~~~l~laa~~-~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS 290 (398)
T KOG0771|consen 217 GAALARKTP-----FSKDEMFSSCRFSVDNAQETLRLAASQ-FPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS 290 (398)
T ss_pred CchhhhcCC-----cccchhhhhceecccCCCceEEEEEec-CCCCceeEEEeeeeccccccchhhhhhccCcceeEEEc
Confidence 854332110 111100 111254444 22222221 25667777776542221 111222334589999999
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCC
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG 2455 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~ 2455 (2548)
++ |++++.|+.||.|-|++. .+-++++.. .+.|..
T Consensus 291 ~d-------Gkf~AlGT~dGsVai~~~---~~lq~~~~v-----------------------------------k~aH~~ 325 (398)
T KOG0771|consen 291 DD-------GKFLALGTMDGSVAIYDA---KSLQRLQYV-----------------------------------KEAHLG 325 (398)
T ss_pred CC-------CcEEEEeccCCcEEEEEe---ceeeeeEee-----------------------------------hhhhee
Confidence 98 899999999999999994 333443333 378999
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 000054 2456 SVTRISTVPNTSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2456 ~VtsLafSPdG~~LaSGS~DGtIrIWDl~T 2485 (2548)
.|+.+.|+|+.+++++.+.|..+.|..+.-
T Consensus 326 ~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 326 FVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999999999998887753
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.8e-10 Score=142.90 Aligned_cols=243 Identities=19% Similarity=0.222 Sum_probs=164.6
Q ss_pred cCCCCEEEE--EECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCc
Q 000054 2228 HPLRPFFLV--GSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQLEVGG 2304 (2548)
Q Consensus 2228 SPdG~~LAS--GS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWDl~tgk 2304 (2548)
+.+..++|+ .+..|.|.||++.....+ +...++.......|+++.|+| |...|++++.||.|++|.+..+.
T Consensus 588 can~~rvAVPL~g~gG~iai~el~~PGrL------PDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~g 661 (1012)
T KOG1445|consen 588 CANNKRVAVPLAGSGGVIAIYELNEPGRL------PDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANG 661 (1012)
T ss_pred eeccceEEEEecCCCceEEEEEcCCCCCC------CcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCC
Confidence 345566664 566799999998853211 111112222347899999999 78899999999999999998765
Q ss_pred ccccccCccceeccCCcccEEE--EcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000054 2305 RSNVRPMESCLCFSSHAMDVSY--ITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2305 ~i~i~p~~s~~t~~gH~~~V~a--fSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
... ........+..|...|++ |+| ..+.++++ |.|.+|++||+++ .+....+.+|++.|.+++|+|+
T Consensus 662 l~e-~~~tPe~~lt~h~eKI~slRfHPLAadvLa~a---syd~Ti~lWDl~~--~~~~~~l~gHtdqIf~~AWSpd---- 731 (1012)
T KOG1445|consen 662 LPE-NEMTPEKILTIHGEKITSLRFHPLAADVLAVA---SYDSTIELWDLAN--AKLYSRLVGHTDQIFGIAWSPD---- 731 (1012)
T ss_pred CCc-ccCCcceeeecccceEEEEEecchhhhHhhhh---hccceeeeeehhh--hhhhheeccCcCceeEEEECCC----
Confidence 322 223445668899999986 666 34677777 4899999999987 5667788999999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCce-eeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEE
Q 000054 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKT-KKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRI 2460 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~-l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsL 2460 (2548)
|..+++.+.||+|++|+-|. +.. ++.- +.. .+ ..--.+
T Consensus 732 ---Gr~~AtVcKDg~~rVy~Prs---~e~pv~Eg--------------------~gp-------------vg--tRgARi 770 (1012)
T KOG1445|consen 732 ---GRRIATVCKDGTLRVYEPRS---REQPVYEG--------------------KGP-------------VG--TRGARI 770 (1012)
T ss_pred ---CcceeeeecCceEEEeCCCC---CCCccccC--------------------CCC-------------cc--CcceeE
Confidence 89999999999999999552 221 1110 000 01 122346
Q ss_pred EEeCCCCEEEEEeCCC----cEEEEECCC--CcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEEE
Q 000054 2461 STVPNTSLFLTGSKDG----DVKLWDAKA--AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCG 2531 (2548)
Q Consensus 2461 afSPdG~~LaSGS~DG----tIrIWDl~T--gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS 2531 (2548)
.|.-+|+++++.|.|. .|.+||.++ +..+.+.--.-+... .|. .+++|. ++||-
T Consensus 771 ~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~---------------LvP--~YD~Ds~~lfltGK 833 (1012)
T KOG1445|consen 771 LWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSP---------------LVP--HYDYDSNVLFLTGK 833 (1012)
T ss_pred EEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCcc---------------ccc--cccCCCceEEEecC
Confidence 6777899888877754 678888764 333433210000000 010 244444 78999
Q ss_pred CCCcEEEEECCCC
Q 000054 2532 GDGSVKLIQLEDY 2544 (2548)
Q Consensus 2532 ~DGtIrIWDL~sg 2544 (2548)
+|..|.+|.+-..
T Consensus 834 GD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 834 GDRFVNMYEVIYE 846 (1012)
T ss_pred CCceEEEEEecCC
Confidence 9999999998644
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-09 Score=132.54 Aligned_cols=270 Identities=9% Similarity=0.104 Sum_probs=160.5
Q ss_pred EEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe-CCCcEEEEEcCCCcccccccCc
Q 000054 2234 FLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LDGTVCTWQLEVGGRSNVRPME 2312 (2548)
Q Consensus 2234 LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS-~DGtVrVWDl~tgk~i~i~p~~ 2312 (2548)
+++...++.|++||+.+...+..++..+ +.+....++++|++++|++++ .++.|.+|+++.........
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~--------~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~-- 74 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD--------VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAA-- 74 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe--------cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEee--
Confidence 4455779999999997432222222211 124567889999999887764 57899999997322111100
Q ss_pred cceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCC--CcceeeeccCCCeEEEEEccCCCCCCCCCCEE-E
Q 000054 2313 SCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPT--SSRASITCHEGGARSISVFDNDLGSGSVSPLI-V 2389 (2548)
Q Consensus 2313 s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~--k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lL-V 2389 (2548)
. ....++.. -..++|+++.+++++. .++.|.+||+..... +.+..+. +.....+++++|+ ++++ +
T Consensus 75 ~-~~~~~~p~-~i~~~~~g~~l~v~~~--~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~-------g~~l~v 142 (330)
T PRK11028 75 E-SPLPGSPT-HISTDHQGRFLFSASY--NANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPD-------NRTLWV 142 (330)
T ss_pred e-ecCCCCce-EEEECCCCCEEEEEEc--CCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCC-------CCEEEE
Confidence 0 01112221 2358999999998863 589999999864211 1222222 2345677889998 5555 5
Q ss_pred EEeCCCcEEEEeCCccccCceeeee-cCCCCCCCccccccccCCCCCC--ccC-CCCCceEEEcccC--C----------
Q 000054 2390 TGGKGGDVGIHDFRYIATGKTKKHK-HSDRGGSSINTCAHADAQTGSG--SKP-GDQNGMLWYIPKA--H---------- 2453 (2548)
Q Consensus 2390 SGS~DGtVrLWDLR~l~TGk~l~tl-~~~~~~s~~~~~~vafSpdGk~--v~s-~D~sv~Iwdi~~g--H---------- 2453 (2548)
+...++.|.+||+.. .+...... .............++++|+|++ +.. .++.+.+|++... .
T Consensus 143 ~~~~~~~v~v~d~~~--~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~ 220 (330)
T PRK11028 143 PCLKEDRIRLFTLSD--DGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM 220 (330)
T ss_pred eeCCCCEEEEEEECC--CCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC
Confidence 666779999999642 22221100 0000001122346789999997 333 3778888886421 0
Q ss_pred ------CCCEEEEEEeCCCCEEEEEeC-CCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe
Q 000054 2454 ------LGSVTRISTVPNTSLFLTGSK-DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG 2526 (2548)
Q Consensus 2454 ------~~~VtsLafSPdG~~LaSGS~-DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG 2526 (2548)
......+.++|+|++++++.. ++.|.+|++.......++. ++. ..+ .....++++|+|
T Consensus 221 p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~----~~~-----~~~------~~p~~~~~~~dg 285 (330)
T PRK11028 221 PADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFE----GHQ-----PTE------TQPRGFNIDHSG 285 (330)
T ss_pred CCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEe----EEE-----ecc------ccCCceEECCCC
Confidence 112235889999999999864 7899999986533111110 000 011 112356899999
Q ss_pred --EE-EEECCCcEEEEECC
Q 000054 2527 --FL-SCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2527 --La-SGS~DGtIrIWDL~ 2542 (2548)
|+ +...+++|.+|+++
T Consensus 286 ~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 286 KYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CEEEEEEccCCcEEEEEEc
Confidence 44 55569999999885
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3e-10 Score=136.56 Aligned_cols=212 Identities=16% Similarity=0.177 Sum_probs=150.3
Q ss_pred ccCCeE--EEEEEEcCC-CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeC
Q 000054 2216 TVENIS--TRAFSSHPL-RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAAL 2291 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPd-G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~ 2291 (2548)
.+.||+ +..++|+|. ...+|+|+.|.+|.||++..+.....+... .....+|...|.-|+|+|. .+.|++++.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltep---vv~L~gH~rrVg~V~wHPtA~NVLlsag~ 152 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEP---VVELYGHQRRVGLVQWHPTAPNVLLSAGS 152 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccc---eEEEeecceeEEEEeecccchhhHhhccC
Confidence 345555 788999995 567889999999999999865433322110 0012457799999999995 678999999
Q ss_pred CCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCC-
Q 000054 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGG- 2368 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~- 2368 (2548)
|.+|.+|++.+|+..- ++. |.+.|.+ |+.+|.++++++ .|+.|+|||.+. ++.+..-.+|.+.
T Consensus 153 Dn~v~iWnv~tgeali--------~l~-hpd~i~S~sfn~dGs~l~Ttc---kDKkvRv~dpr~--~~~v~e~~~heG~k 218 (472)
T KOG0303|consen 153 DNTVSIWNVGTGEALI--------TLD-HPDMVYSMSFNRDGSLLCTTC---KDKKVRVIDPRR--GTVVSEGVAHEGAK 218 (472)
T ss_pred CceEEEEeccCCceee--------ecC-CCCeEEEEEeccCCceeeeec---ccceeEEEcCCC--CcEeeecccccCCC
Confidence 9999999999986331 233 8887874 899999999986 999999999987 6777776788763
Q ss_pred eEEEEEccCCCCCCCCCCEEEEEe---CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCce
Q 000054 2369 ARSISVFDNDLGSGSVSPLIVTGG---KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGM 2445 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVSGS---~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~ 2445 (2548)
...+.|..+ +.++.||- .+..+-+||-..+...-....+
T Consensus 219 ~~Raifl~~-------g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el------------------------------- 260 (472)
T KOG0303|consen 219 PARAIFLAS-------GKIFTTGFSRMSERQIALWDPNNLEEPIALQEL------------------------------- 260 (472)
T ss_pred cceeEEecc-------CceeeeccccccccceeccCcccccCcceeEEe-------------------------------
Confidence 344555555 55554543 5788999996544443322222
Q ss_pred EEEcccCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCcE
Q 000054 2446 LWYIPKAHLGSVTRISTVPNTSLFLTGS-KDGDVKLWDAKAAQL 2488 (2548)
Q Consensus 2446 Iwdi~~gH~~~VtsLafSPdG~~LaSGS-~DGtIrIWDl~Tgel 2488 (2548)
...+.|.---|+|+..+++-+| .|+.|+-|.+..-.+
T Consensus 261 ------DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 261 ------DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred ------ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 1223444445788888776665 499999999976553
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.7e-10 Score=131.08 Aligned_cols=239 Identities=12% Similarity=0.150 Sum_probs=159.5
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEEC
Q 000054 2274 ISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDT 2351 (2548)
Q Consensus 2274 VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl 2351 (2548)
..++.|++.|.+||+|+.||.|.+||+.+.... ..+.+|..+|+ ||+++|+.++|+ |.|..|.+||+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~ia--------r~lsaH~~pi~sl~WS~dgr~Llts---S~D~si~lwDl 94 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIA--------RMLSAHVRPITSLCWSRDGRKLLTS---SRDWSIKLWDL 94 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchh--------hhhhccccceeEEEecCCCCEeeee---cCCceeEEEec
Confidence 789999999999999999999999999876422 34789999887 499999999998 49999999999
Q ss_pred CCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccC
Q 000054 2352 LAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADA 2431 (2548)
Q Consensus 2352 ~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafS 2431 (2548)
.. +.+++.+. ..++|+...|+|.+ .+..+..-.+..-.+-++. .++...-...+............|.
T Consensus 95 ~~--gs~l~rir-f~spv~~~q~hp~k------~n~~va~~~~~sp~vi~~s---~~~h~~Lp~d~d~dln~sas~~~fd 162 (405)
T KOG1273|consen 95 LK--GSPLKRIR-FDSPVWGAQWHPRK------RNKCVATIMEESPVVIDFS---DPKHSVLPKDDDGDLNSSASHGVFD 162 (405)
T ss_pred cC--CCceeEEE-ccCccceeeecccc------CCeEEEEEecCCcEEEEec---CCceeeccCCCcccccccccccccc
Confidence 87 55777665 47899999999996 4555555555555566632 1111111112222333333445688
Q ss_pred CCCCCc--cCCCCCceEEEcc--------cCC-CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE---EEeccccc
Q 000054 2432 QTGSGS--KPGDQNGMLWYIP--------KAH-LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLV---YHWSKLHE 2497 (2548)
Q Consensus 2432 pdGk~v--~s~D~sv~Iwdi~--------~gH-~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell---~tL~~~Hs 2497 (2548)
+.|+++ +.+.|.+.+++.. +.- ...|..+.++..|++|+.-+.|..||.|+++.---. .... .
T Consensus 163 r~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e---~ 239 (405)
T KOG1273|consen 163 RRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVE---P 239 (405)
T ss_pred CCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcC---h
Confidence 889984 4444555556521 111 257888999999999999999999999998621000 0000 0
Q ss_pred ccccccCcccCCCCcee-ecEEEEEEcCCe-EE--EEECCCcEEEEECCCCcc
Q 000054 2498 RHTFLQPSSRGFGGVVR-AGVTDIQVVSRG-FL--SCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2498 ~hsfl~~tl~GH~~~V~-a~VtsLafSPdG-La--SGS~DGtIrIWDL~sg~l 2546 (2548)
.|.+ .+.|+ ..-.++.||.+| ++ +.+.-..++||.-..|.+
T Consensus 240 ~~K~--------qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsL 284 (405)
T KOG1273|consen 240 EHKL--------QDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSL 284 (405)
T ss_pred hHHH--------HHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcce
Confidence 1111 01111 112456899999 33 334456799999876643
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.9e-11 Score=152.05 Aligned_cols=233 Identities=18% Similarity=0.187 Sum_probs=162.5
Q ss_pred CCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCe
Q 000054 2268 PYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGIN 2345 (2548)
Q Consensus 2268 ~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGt 2345 (2548)
.+|..+|+|+.|...|.++++|+.|..|+||..+++.+.. ...||..++.. ++.+..+++++ |.|..
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA--------s~rGhs~ditdlavs~~n~~iaaa---S~D~v 255 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA--------SCRGHSGDITDLAVSSNNTMIAAA---SNDKV 255 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc--------cCCCCccccchhccchhhhhhhhc---ccCce
Confidence 4577999999999999999999999999999998876543 47899999984 55555566666 59999
Q ss_pred EEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccc
Q 000054 2346 VVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINT 2425 (2548)
Q Consensus 2346 VrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~ 2425 (2548)
|++|.+.. +.++..+.+|++.|++++|+|- .+.+.||++++||.|. ..-.. .............
T Consensus 256 IrvWrl~~--~~pvsvLrghtgavtaiafsP~-----------~sss~dgt~~~wd~r~-~~~~y--~prp~~~~~~~~~ 319 (1113)
T KOG0644|consen 256 IRVWRLPD--GAPVSVLRGHTGAVTAIAFSPR-----------ASSSDDGTCRIWDARL-EPRIY--VPRPLKFTEKDLV 319 (1113)
T ss_pred EEEEecCC--CchHHHHhccccceeeeccCcc-----------ccCCCCCceEeccccc-ccccc--CCCCCCcccccce
Confidence 99999976 7889999999999999999998 2678899999999872 11000 0000000001111
Q ss_pred cccccCCCCCC--ccCCCCCceEEEcc--cCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEecccccccc
Q 000054 2426 CAHADAQTGSG--SKPGDQNGMLWYIP--KAHLGSVTRISTVPNT-SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHT 2500 (2548)
Q Consensus 2426 ~~vafSpdGk~--v~s~D~sv~Iwdi~--~gH~~~VtsLafSPdG-~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hs 2500 (2548)
..+.+..++.- .+..++....|.+. ..|...+.-+.++.+. .+.+++-.+-.+++|++.+|++++.+
T Consensus 320 ~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l-------- 391 (1113)
T KOG0644|consen 320 DSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL-------- 391 (1113)
T ss_pred eeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhh--------
Confidence 22233333222 45555555666532 2344443333333322 46666667888999999999888654
Q ss_pred cccCcccCCCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCCCc
Q 000054 2501 FLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2501 fl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.||...+ .-+.++|-. ..++|.||...|||+-.|.
T Consensus 392 ------~ghsd~~----yvLd~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 392 ------MGHSDEV----YVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred ------cccccce----eeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence 5676544 445899988 4599999999999997653
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.3e-10 Score=133.09 Aligned_cols=195 Identities=21% Similarity=0.236 Sum_probs=140.0
Q ss_pred CEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceee
Q 000054 2284 HRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI 2362 (2548)
Q Consensus 2284 ~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl 2362 (2548)
..+|++-.+|+|++||..+++.... .+..+++.+.|.+.+. .++.+.+|+ .||+|++||+|......+...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~-----fk~~~~~~N~vrf~~~ds~h~v~s~s---sDG~Vr~wD~Rs~~e~a~~~~ 112 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEE-----FKGPPATTNGVRFISCDSPHGVISCS---SDGTVRLWDIRSQAESARISW 112 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhe-----ecCCCCcccceEEecCCCCCeeEEec---cCCeEEEEEeecchhhhheec
Confidence 5688999999999999999764432 1224455566666655 456777775 899999999998656667777
Q ss_pred eccC-CCeEEEEEccCCCCCCCCCCEEEEEe----CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCc
Q 000054 2363 TCHE-GGARSISVFDNDLGSGSVSPLIVTGG----KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGS 2437 (2548)
Q Consensus 2363 ~gHs-~~VtSLafsP~dlg~gs~g~lLVSGS----~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v 2437 (2548)
..|. .+..+++..-. ..++++|. .|-.|.+||+|.-+ +.++.+
T Consensus 113 ~~~~~~~f~~ld~nck-------~~ii~~GtE~~~s~A~v~lwDvR~~q--q~l~~~----------------------- 160 (376)
T KOG1188|consen 113 TQQSGTPFICLDLNCK-------KNIIACGTELTRSDASVVLWDVRSEQ--QLLRQL----------------------- 160 (376)
T ss_pred cCCCCCcceEeeccCc-------CCeEEeccccccCceEEEEEEecccc--chhhhh-----------------------
Confidence 7777 45566664433 55777775 57889999988411 112222
Q ss_pred cCCCCCceEEEcccCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeec
Q 000054 2438 KPGDQNGMLWYIPKAHLGSVTRISTVP-NTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAG 2516 (2548)
Q Consensus 2438 ~s~D~sv~Iwdi~~gH~~~VtsLafSP-dG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~ 2516 (2548)
...|...|+++.|+| +.++|+|||.||.|.++|+..-..-..+ -+ ..+|+ +.
T Consensus 161 ------------~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL-----~~------viN~~----sS 213 (376)
T KOG1188|consen 161 ------------NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDAL-----LH------VINHG----SS 213 (376)
T ss_pred ------------hhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhH-----HH------hhccc----ce
Confidence 266999999999999 5689999999999999999743221111 11 13444 44
Q ss_pred EEEEEEcCCe---EEEEECCCcEEEEECCCCc
Q 000054 2517 VTDIQVVSRG---FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2517 VtsLafSPdG---LaSGS~DGtIrIWDL~sg~ 2545 (2548)
|..+.|..++ |.+-+.+++..+|+++.+.
T Consensus 214 I~~igw~~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 214 IHLIGWLSKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred eeeeeeecCCcceEEEEEccCceeEEEccCCC
Confidence 6788999988 8889999999999998763
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5.9e-10 Score=137.21 Aligned_cols=137 Identities=19% Similarity=0.206 Sum_probs=101.7
Q ss_pred CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccC
Q 000054 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPM 2311 (2548)
Q Consensus 2232 ~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~ 2311 (2548)
..++.++.||.+.|-+- .++....+ ..|.+.|.+-+|+|||.-|+|++.||.|++|.-...-+.
T Consensus 76 d~~~i~s~DGkf~il~k-~~rVE~sv----------~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRS----- 139 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK-SARVERSI----------SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRS----- 139 (737)
T ss_pred ceEEEEcCCceEEEecc-cchhhhhh----------hhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHH-----
Confidence 45777888998888763 23322222 236699999999999999999999999999986532111
Q ss_pred ccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEE
Q 000054 2312 ESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIV 2389 (2548)
Q Consensus 2312 ~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLV 2389 (2548)
+.......|. +|.|+.+.++.+ ..+.+.|=-+.. ...+...++|.+-|.++.|++. +++++
T Consensus 140 ----tl~Q~~~~v~c~~W~p~S~~vl~c----~g~h~~IKpL~~--n~k~i~WkAHDGiiL~~~W~~~-------s~lI~ 202 (737)
T KOG1524|consen 140 ----TVVQNEESIRCARWAPNSNSIVFC----QGGHISIKPLAA--NSKIIRWRAHDGLVLSLSWSTQ-------SNIIA 202 (737)
T ss_pred ----HHhhcCceeEEEEECCCCCceEEe----cCCeEEEeeccc--ccceeEEeccCcEEEEeecCcc-------cccee
Confidence 1222334454 488887766665 456777766654 3456677899999999999998 78999
Q ss_pred EEeCCCcEEEEe
Q 000054 2390 TGGKGGDVGIHD 2401 (2548)
Q Consensus 2390 SGS~DGtVrLWD 2401 (2548)
+||.|-..++||
T Consensus 203 sgGED~kfKvWD 214 (737)
T KOG1524|consen 203 SGGEDFRFKIWD 214 (737)
T ss_pred ecCCceeEEeec
Confidence 999999999999
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-10 Score=141.83 Aligned_cols=226 Identities=17% Similarity=0.213 Sum_probs=178.9
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
..+.|+.+|+.++.|+..|.|..+|+.++.....+.. ...|.++.|-.+..++|++ ....+.|||-..
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-----------~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~G 200 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-----------METVRDVTFLHNEQFFAVA-QKKYVYVYDNNG 200 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeeh-----------hhhhhhhhhhcchHHHHhh-hhceEEEecCCC
Confidence 5678889999999999999999999999988877743 3679999999888877765 457888998653
Q ss_pred CcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCC
Q 000054 2303 GGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLG 2380 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg 2380 (2548)
- ...|+..|. .|. .|-|..-++++++ ..|.++.-|+.+ ++.+..+..-.+.+..+.-+|-
T Consensus 201 t---------ElHClk~~~-~v~rLeFLPyHfLL~~~~---~~G~L~Y~DVS~--GklVa~~~t~~G~~~vm~qNP~--- 262 (545)
T KOG1272|consen 201 T---------ELHCLKRHI-RVARLEFLPYHFLLVAAS---EAGFLKYQDVST--GKLVASIRTGAGRTDVMKQNPY--- 262 (545)
T ss_pred c---------EEeehhhcC-chhhhcccchhheeeecc---cCCceEEEeech--hhhhHHHHccCCccchhhcCCc---
Confidence 2 123444443 333 2667777777775 889999999987 7888888888889999998888
Q ss_pred CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEE
Q 000054 2381 SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRI 2460 (2548)
Q Consensus 2381 ~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsL 2460 (2548)
+..+-+|..+|+|.+|. ..+.+.+..+ ..|.++|.+|
T Consensus 263 ----NaVih~GhsnGtVSlWS---P~skePLvKi------------------------------------LcH~g~V~si 299 (545)
T KOG1272|consen 263 ----NAVIHLGHSNGTVSLWS---PNSKEPLVKI------------------------------------LCHRGPVSSI 299 (545)
T ss_pred ----cceEEEcCCCceEEecC---CCCcchHHHH------------------------------------HhcCCCcceE
Confidence 56889999999999999 4444444333 5699999999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEECCCcEEEEE
Q 000054 2461 STVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2461 afSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS~DGtIrIWD 2540 (2548)
+++++|+|++|.|.|..++|||++....+.++. .-| ....+++|..|++++|....|.||.
T Consensus 300 Av~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~-------------tp~------~a~~ls~SqkglLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 300 AVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR-------------TPH------PASNLSLSQKGLLALSYGDHVQIWK 360 (545)
T ss_pred EECCCCcEEeecccccceeEeeeccccccceee-------------cCC------CccccccccccceeeecCCeeeeeh
Confidence 999999999999999999999999877666552 111 1345689999977777878899996
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.7e-09 Score=126.21 Aligned_cols=208 Identities=19% Similarity=0.259 Sum_probs=143.2
Q ss_pred EEEEEEcCCC-----CEEEEEECCCeEEEEEcCCCceeEEEe-ccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCc
Q 000054 2222 TRAFSSHPLR-----PFFLVGSSNTHIYLWEFGKDKATATYG-VLPAANVPPPYALASISALQFDH-YGHRFASAALDGT 2294 (2548)
Q Consensus 2222 V~~VsfSPdG-----~~LASGS~DGsVrLWDl~tg~~l~t~~-~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGt 2294 (2548)
+..+.|.|+. ++|||.+ ..+|+|.+...+...... .+..+ +...+.+++++..|+. +.+++.+++-|-+
T Consensus 99 ~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~--kns~~~aPlTSFDWne~dp~~igtSSiDTT 174 (364)
T KOG0290|consen 99 VTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNN--KNSEFCAPLTSFDWNEVDPNLIGTSSIDTT 174 (364)
T ss_pred ccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccC--cccccCCcccccccccCCcceeEeecccCe
Confidence 4566677765 2455433 469999998532222111 11111 2334557999999998 7889999999999
Q ss_pred EEEEEcCCCcccccccCccceeccCCcccEEE--EcCCC-CEEEEEeccCCCCeEEEEECCCCCCCc-ceeeeccCCCeE
Q 000054 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSG-SVIAAAGHSSNGINVVVWDTLAPPTSS-RASITCHEGGAR 2370 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdG-slLATgG~SS~DGtVrIWDl~t~~~k~-v~sl~gHs~~Vt 2370 (2548)
..|||++++....++ ..+-.|...|.. |...+ +.||++| .||.|+++|++.-.... +..-.....+..
T Consensus 175 CTiWdie~~~~~~vk-----TQLIAHDKEV~DIaf~~~s~~~FASvg---aDGSvRmFDLR~leHSTIIYE~p~~~~pLl 246 (364)
T KOG0290|consen 175 CTIWDIETGVSGTVK-----TQLIAHDKEVYDIAFLKGSRDVFASVG---ADGSVRMFDLRSLEHSTIIYEDPSPSTPLL 246 (364)
T ss_pred EEEEEEeecccccee-----eEEEecCcceeEEEeccCccceEEEec---CCCcEEEEEecccccceEEecCCCCCCcce
Confidence 999999987321111 125678877763 55443 5888887 89999999998632211 111112246778
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCC-CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEc
Q 000054 2371 SISVFDNDLGSGSVSPLIVTGGKG-GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYI 2449 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~D-GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi 2449 (2548)
.++|++.+ .+++++-..| ..|.|.|+|... ..+..+
T Consensus 247 RLswnkqD------pnymATf~~dS~~V~iLDiR~P~--tpva~L----------------------------------- 283 (364)
T KOG0290|consen 247 RLSWNKQD------PNYMATFAMDSNKVVILDIRVPC--TPVARL----------------------------------- 283 (364)
T ss_pred eeccCcCC------chHHhhhhcCCceEEEEEecCCC--cceehh-----------------------------------
Confidence 89999886 6788886655 479999988522 222222
Q ss_pred ccCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCC
Q 000054 2450 PKAHLGSVTRISTVPN-TSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2450 ~~gH~~~VtsLafSPd-G~~LaSGS~DGtIrIWDl~T 2485 (2548)
++|.+.|++++|.|. ...++|+|.|..+-+||+.+
T Consensus 284 -~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 284 -RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred -hcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 789999999999995 57999999999999999975
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=136.56 Aligned_cols=234 Identities=14% Similarity=0.197 Sum_probs=165.8
Q ss_pred CccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000054 2215 ATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2215 ~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
.++.+|. |.|++|+.+|+.+|+|+.|..|.+|+-.... +-.| .|.+.|.||.|+|-.+.+++|+-.
T Consensus 47 qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkY-----------SH~D~IQCMsFNP~~h~LasCsLs 114 (1081)
T KOG1538|consen 47 QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKY-----------SHNDAIQCMSFNPITHQLASCSLS 114 (1081)
T ss_pred cccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeee-----------ccCCeeeEeecCchHHHhhhcchh
Confidence 4555555 8999999999999999999999999954322 2222 267999999999999999999864
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeE
Q 000054 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGAR 2370 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~Vt 2370 (2548)
..-+|..+...... . ....++. +|..||++++.|- .||+|.|-+-.....-.+..--|.+++|+
T Consensus 115 -dFglWS~~qK~V~K---------~-kss~R~~~CsWtnDGqylalG~---~nGTIsiRNk~gEek~~I~Rpgg~Nspiw 180 (1081)
T KOG1538|consen 115 -DFGLWSPEQKSVSK---------H-KSSSRIICCSWTNDGQYLALGM---FNGTISIRNKNGEEKVKIERPGGSNSPIW 180 (1081)
T ss_pred -hccccChhhhhHHh---------h-hhheeEEEeeecCCCcEEEEec---cCceEEeecCCCCcceEEeCCCCCCCCce
Confidence 34578765432111 1 1122333 4889999999985 79999988654311112233335778999
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEE
Q 000054 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWY 2448 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwd 2448 (2548)
+++|+|.. |.|. ...+++.....++.++.+. |+.+..- ..-.....++.+-++|.+ +++.++...++.
T Consensus 181 si~~~p~s-g~G~-~di~aV~DW~qTLSFy~Ls----G~~Igk~----r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT 250 (1081)
T KOG1538|consen 181 SICWNPSS-GEGR-NDILAVADWGQTLSFYQLS----GKQIGKD----RALNFDPCCISYFTNGEYILLGGSDKQLSLFT 250 (1081)
T ss_pred EEEecCCC-CCCc-cceEEEEeccceeEEEEec----ceeeccc----ccCCCCchhheeccCCcEEEEccCCCceEEEe
Confidence 99999984 3322 4477777888888888753 3333211 111234567788899998 788888777774
Q ss_pred -------cccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 000054 2449 -------IPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2449 -------i~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
+.-..+.+|+.++..|++++++.|+.||+|..|++-
T Consensus 251 R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 251 RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 222367799999999999999999999999998864
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.9e-09 Score=133.08 Aligned_cols=200 Identities=14% Similarity=0.180 Sum_probs=149.4
Q ss_pred EEEEEEcCCCCEEEEEE---CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGS---SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS---~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVW 2298 (2548)
+..+.||..|.||++.. ....|.|.++........|+. ..+.|.++.|+|...+|++++. ..|++|
T Consensus 524 i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~k----------skG~vq~v~FHPs~p~lfVaTq-~~vRiY 592 (733)
T KOG0650|consen 524 IRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRK----------SKGLVQRVKFHPSKPYLFVATQ-RSVRIY 592 (733)
T ss_pred cceeeeecCCceEEEeccCCCcceEEEEecccccccCchhh----------cCCceeEEEecCCCceEEEEec-cceEEE
Confidence 68899999999999864 345788999887655544422 2377999999999999988875 689999
Q ss_pred EcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEcc
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
|+.....+.. +......|. +++|.|..++.++ .|+.+..+|+... .++.+.+.-|...+++|+|++
T Consensus 593 dL~kqelvKk--------L~tg~kwiS~msihp~GDnli~gs---~d~k~~WfDldls-skPyk~lr~H~~avr~Va~H~ 660 (733)
T KOG0650|consen 593 DLSKQELVKK--------LLTGSKWISSMSIHPNGDNLILGS---YDKKMCWFDLDLS-SKPYKTLRLHEKAVRSVAFHK 660 (733)
T ss_pred ehhHHHHHHH--------HhcCCeeeeeeeecCCCCeEEEec---CCCeeEEEEcccC-cchhHHhhhhhhhhhhhhhcc
Confidence 9976432221 222222333 4788998888875 8999999999863 678899999999999999999
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCC
Q 000054 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGS 2456 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~ 2456 (2548)
. -+++++|+.||++.|+--+. ...+ ..+.-+.-...+.+|...
T Consensus 661 r-------yPLfas~sdDgtv~Vfhg~V------Y~Dl------------------------~qnpliVPlK~L~gH~~~ 703 (733)
T KOG0650|consen 661 R-------YPLFASGSDDGTVIVFHGMV------YNDL------------------------LQNPLIVPLKRLRGHEKT 703 (733)
T ss_pred c-------cceeeeecCCCcEEEEeeee------ehhh------------------------hcCCceEeeeeccCceee
Confidence 8 68999999999999997321 1000 000011122334677554
Q ss_pred ----EEEEEEeCCCCEEEEEeCCCcEEEE
Q 000054 2457 ----VTRISTVPNTSLFLTGSKDGDVKLW 2481 (2548)
Q Consensus 2457 ----VtsLafSPdG~~LaSGS~DGtIrIW 2481 (2548)
|..+.|||...+|++++.||+|++|
T Consensus 704 ~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 704 NDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred cccceEeecccCCCceEEecCCCceEEee
Confidence 8999999999999999999999998
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.2e-09 Score=125.88 Aligned_cols=186 Identities=16% Similarity=0.182 Sum_probs=138.5
Q ss_pred cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeC
Q 000054 2323 DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDF 2402 (2548)
Q Consensus 2323 ~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDL 2402 (2548)
.+.+++.+|..++++| .||++|||+.-. ...+.....|.+.|.++.|+|+ +.+|++-+.| ..+|||
T Consensus 148 k~vaf~~~gs~latgg---~dg~lRv~~~Ps--~~t~l~e~~~~~eV~DL~FS~d-------gk~lasig~d-~~~VW~- 213 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGG---TDGTLRVWEWPS--MLTILEEIAHHAEVKDLDFSPD-------GKFLASIGAD-SARVWS- 213 (398)
T ss_pred eEEEEcCCCCEeeecc---ccceEEEEecCc--chhhhhhHhhcCccccceeCCC-------CcEEEEecCC-ceEEEE-
Confidence 5667999999999998 899999999632 4566777789999999999999 8899999999 999999
Q ss_pred CccccCceeeeecCCCCCCCccccccccCCCC---CC----ccCCCCCceEEEcccC-------------CCCCEEEEEE
Q 000054 2403 RYIATGKTKKHKHSDRGGSSINTCAHADAQTG---SG----SKPGDQNGMLWYIPKA-------------HLGSVTRIST 2462 (2548)
Q Consensus 2403 R~l~TGk~l~tl~~~~~~s~~~~~~vafSpdG---k~----v~s~D~sv~Iwdi~~g-------------H~~~VtsLaf 2462 (2548)
..+|.++.... + .........+-|+.|+ .+ .....+.++.+++..- -...|++++.
T Consensus 214 --~~~g~~~a~~t-~-~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~V 289 (398)
T KOG0771|consen 214 --VNTGAALARKT-P-FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAV 289 (398)
T ss_pred --eccCchhhhcC-C-cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEE
Confidence 55665555531 1 1222223334444444 11 2222233344443211 2348999999
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEE
Q 000054 2463 VPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2463 SPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWD 2540 (2548)
+++|++++.|+.||.|-|++..+-+.++.++ +.|.. .|+.+.|+|+. +++.+.|..+.+..
T Consensus 290 S~dGkf~AlGT~dGsVai~~~~~lq~~~~vk-------------~aH~~----~VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 290 SDDGKFLALGTMDGSVAIYDAKSLQRLQYVK-------------EAHLG----FVTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred cCCCcEEEEeccCCcEEEEEeceeeeeEeeh-------------hhhee----eeeeEEEcCCcCcccccccCCceeEEE
Confidence 9999999999999999999999999998775 45553 47888999998 88889999888887
Q ss_pred CCC
Q 000054 2541 LED 2543 (2548)
Q Consensus 2541 L~s 2543 (2548)
+.-
T Consensus 353 l~v 355 (398)
T KOG0771|consen 353 LAV 355 (398)
T ss_pred Eee
Confidence 754
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-09 Score=122.42 Aligned_cols=214 Identities=15% Similarity=0.194 Sum_probs=148.4
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccccccc--CccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEE
Q 000054 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRP--MESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVW 2349 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p--~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIW 2349 (2548)
..|.+-+|+|.+++|+.|..+|+|.+..+..-......+ ......+++|..++..+-....++++|| ||.|+-|
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~g----dG~V~gw 86 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGG----DGLVYGW 86 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeecc----CceEEEe
Confidence 457777899999999999999999999986431111111 1122345789998886443457788875 7999999
Q ss_pred ECCCCCC----Ccc--eeeeccC-----CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCC
Q 000054 2350 DTLAPPT----SSR--ASITCHE-----GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDR 2418 (2548)
Q Consensus 2350 Dl~t~~~----k~v--~sl~gHs-----~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~ 2418 (2548)
..+.... +.. ....-|. ..|+++...|. .+-++.++.|+.++-|| +.+|+..+.+
T Consensus 87 ~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~-------enSi~~AgGD~~~y~~d---lE~G~i~r~~---- 152 (325)
T KOG0649|consen 87 EWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS-------ENSILFAGGDGVIYQVD---LEDGRIQREY---- 152 (325)
T ss_pred eehhhhhhccchhhhhhcCccccCcccCCccceeEeccC-------CCcEEEecCCeEEEEEE---ecCCEEEEEE----
Confidence 8653111 111 1111222 36888988888 34555556899999999 7778877776
Q ss_pred CCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccc
Q 000054 2419 GGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHER 2498 (2548)
Q Consensus 2419 ~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~ 2498 (2548)
+||++.|.+++--.....+++|++||++||||.++++.+..+......
T Consensus 153 --------------------------------rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~ 200 (325)
T KOG0649|consen 153 --------------------------------RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP 200 (325)
T ss_pred --------------------------------cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccCh
Confidence 899999999998666677889999999999999999999988421111
Q ss_pred cccccCcccCCCCceeecEEEEEEcCCeEEEEECCCcEEEEECCCC
Q 000054 2499 HTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2499 hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS~DGtIrIWDL~sg 2544 (2548)
. .++.|-+ ..|.+++.+.+-+++|+ ...+.+|.++..
T Consensus 201 -~----~lRp~~g---~wigala~~edWlvCGg-Gp~lslwhLrss 237 (325)
T KOG0649|consen 201 -N----LLRPDWG---KWIGALAVNEDWLVCGG-GPKLSLWHLRSS 237 (325)
T ss_pred -h----hcCcccC---ceeEEEeccCceEEecC-CCceeEEeccCC
Confidence 1 1344443 23456677666566554 467899999764
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.3e-08 Score=122.71 Aligned_cols=233 Identities=14% Similarity=0.193 Sum_probs=155.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC--CcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD--GTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D--GtVrVWD 2299 (2548)
+..+.|+.+...|..|+.|| -++|+.......... ......|--+-|+ ..++|..+.+ +.+++.+
T Consensus 8 i~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~----------~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~ 74 (391)
T KOG2110|consen 8 INFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSK----------DTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVH 74 (391)
T ss_pred eeeeeeccceeEEEccCCCc-eeEEecCchHHhhcc----------cCCCeEEEEeecc--cceeEEEecCCCceEEEEE
Confidence 35566888888899999998 467776643321110 0011346666666 3445544444 3578887
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee---ccCCCeEEEEEcc
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT---CHEGGARSISVFD 2376 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~---gHs~~VtSLafsP 2376 (2548)
...+..+ |---....|.++.-+-+.++++ -...|+|||++. .+.++++. .+..++.++..++
T Consensus 75 ~Kk~~~I---------Ce~~fpt~IL~VrmNr~RLvV~----Lee~IyIydI~~--MklLhTI~t~~~n~~gl~AlS~n~ 139 (391)
T KOG2110|consen 75 FKKKTTI---------CEIFFPTSILAVRMNRKRLVVC----LEESIYIYDIKD--MKLLHTIETTPPNPKGLCALSPNN 139 (391)
T ss_pred cccCceE---------EEEecCCceEEEEEccceEEEE----EcccEEEEeccc--ceeehhhhccCCCccceEeeccCC
Confidence 7644311 1111223444433344556665 345699999986 56666655 3455566666555
Q ss_pred CCCCCCCCCCEEEEEe--CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000054 2377 NDLGSGSVSPLIVTGG--KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS--~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
. +.+++--+ ..|.|.+||+- +-+.+..+ .+|+
T Consensus 140 ~-------n~ylAyp~s~t~GdV~l~d~~---nl~~v~~I------------------------------------~aH~ 173 (391)
T KOG2110|consen 140 A-------NCYLAYPGSTTSGDVVLFDTI---NLQPVNTI------------------------------------NAHK 173 (391)
T ss_pred C-------CceEEecCCCCCceEEEEEcc---cceeeeEE------------------------------------EecC
Confidence 5 34666433 46899999943 33443343 6799
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCc-EEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEE
Q 000054 2455 GSVTRISTVPNTSLFLTGSKDGD-VKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCG 2531 (2548)
Q Consensus 2455 ~~VtsLafSPdG~~LaSGS~DGt-IrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS 2531 (2548)
+.+-+++|+|+|.+|||+|+.|+ |||+.+.+|+.+++|. ||-. .+.|.+++|+|++ |++.|
T Consensus 174 ~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR-------------RG~~---~~~IySL~Fs~ds~~L~~sS 237 (391)
T KOG2110|consen 174 GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR-------------RGTY---PVSIYSLSFSPDSQFLAASS 237 (391)
T ss_pred CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee-------------CCce---eeEEEEEEECCCCCeEEEec
Confidence 99999999999999999999996 7999999999999882 3322 3568999999999 66778
Q ss_pred CCCcEEEEECCCC
Q 000054 2532 GDGSVKLIQLEDY 2544 (2548)
Q Consensus 2532 ~DGtIrIWDL~sg 2544 (2548)
..++|.+|+++.-
T Consensus 238 ~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 238 NTETVHIFKLEKV 250 (391)
T ss_pred CCCeEEEEEeccc
Confidence 8899999999753
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.2e-10 Score=134.20 Aligned_cols=172 Identities=17% Similarity=0.272 Sum_probs=137.1
Q ss_pred CCeEEEEEccCCC-EEEEEeCCCcEEEEEcCCCccccc-ccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEE
Q 000054 2272 ASISALQFDHYGH-RFASAALDGTVCTWQLEVGGRSNV-RPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVV 2347 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~-~LaSGS~DGtVrVWDl~tgk~i~i-~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVr 2347 (2548)
.+|.++.|.+++. +++||+.|..|++|.++.+....- ........+..|...|.+ |+|+|.++|+|+ ++|.|.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~---D~g~v~ 90 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGG---DGGEVF 90 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecC---CCceEE
Confidence 6899999998755 999999999999999976532210 122334457788888764 999999999997 899999
Q ss_pred EEECC--------C------CCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeee
Q 000054 2348 VWDTL--------A------PPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKH 2413 (2548)
Q Consensus 2348 IWDl~--------t------~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~t 2413 (2548)
+|-.. + ........+.+|...|..++|+|+ +..+++|+.|.++++|| ...|.....
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d-------~~~l~s~s~dns~~l~D---v~~G~l~~~ 160 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD-------SNFLVSGSVDNSVRLWD---VHAGQLLAI 160 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC-------CceeeeeeccceEEEEE---eccceeEee
Confidence 99865 1 001123556689999999999999 78999999999999999 455666655
Q ss_pred ecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2414 KHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2414 l~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
+ .+|...|..++|+|-++++++-+.|...+++++...+.++..
T Consensus 161 ~------------------------------------~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~ 203 (434)
T KOG1009|consen 161 L------------------------------------DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRH 203 (434)
T ss_pred c------------------------------------cccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeee
Confidence 5 779999999999999999999999998888888766655544
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.2e-10 Score=138.52 Aligned_cols=228 Identities=18% Similarity=0.206 Sum_probs=170.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|..+.|-.+..++|++ +...++||| ..|..+++++. ...|..+.|-|..-+|++++..|.++.-|+.
T Consensus 173 v~Dv~~LHneq~~AVA-QK~y~yvYD-~~GtElHClk~-----------~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS 239 (545)
T KOG1272|consen 173 VRDVTFLHNEQFFAVA-QKKYVYVYD-NNGTELHCLKR-----------HIRVARLEFLPYHFLLVAASEAGFLKYQDVS 239 (545)
T ss_pred hhhhhhhcchHHHHhh-hhceEEEec-CCCcEEeehhh-----------cCchhhhcccchhheeeecccCCceEEEeec
Confidence 4667776677777664 557899999 56777777754 2679999999999999999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
+|+.+... . ......++.+.+|-...+-+|. .+|+|.+|.... .+++..+.+|.++|.+|++.++
T Consensus 240 ~GklVa~~-----~-t~~G~~~vm~qNP~NaVih~Gh---snGtVSlWSP~s--kePLvKiLcH~g~V~siAv~~~---- 304 (545)
T KOG1272|consen 240 TGKLVASI-----R-TGAGRTDVMKQNPYNAVIHLGH---SNGTVSLWSPNS--KEPLVKILCHRGPVSSIAVDRG---- 304 (545)
T ss_pred hhhhhHHH-----H-ccCCccchhhcCCccceEEEcC---CCceEEecCCCC--cchHHHHHhcCCCcceEEECCC----
Confidence 99754321 1 1122235556788888888876 799999999976 6788888899999999999998
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEc-cc---------
Q 000054 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYI-PK--------- 2451 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi-~~--------- 2451 (2548)
|.+++|.|.|..|+|||+|+.. .+.+.. .......+++|+.|.+..+....+.||.- ..
T Consensus 305 ---G~YMaTtG~Dr~~kIWDlR~~~---ql~t~~-----tp~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pY 373 (545)
T KOG1272|consen 305 ---GRYMATTGLDRKVKIWDLRNFY---QLHTYR-----TPHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPY 373 (545)
T ss_pred ---CcEEeecccccceeEeeecccc---ccceee-----cCCCccccccccccceeeecCCeeeeehhhhcCCCCCCcch
Confidence 8999999999999999998643 222221 12234556788888888888888899952 11
Q ss_pred -CC--CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcE
Q 000054 2452 -AH--LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQL 2488 (2548)
Q Consensus 2452 -gH--~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgel 2488 (2548)
.| .+.|..+.|.|-.+.|-.|-..|.-.+-=...|++
T Consensus 374 m~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGeP 413 (545)
T KOG1272|consen 374 MNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGEP 413 (545)
T ss_pred hhhccCcccccceeccHHHeeeccccCCceeEeccCCCCC
Confidence 12 45899999999888888777766555443344443
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.3e-09 Score=133.98 Aligned_cols=212 Identities=15% Similarity=0.149 Sum_probs=139.0
Q ss_pred CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC---CcEEEEEcCCCcccccccCcccee
Q 000054 2240 NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD---GTVCTWQLEVGGRSNVRPMESCLC 2316 (2548)
Q Consensus 2240 DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D---GtVrVWDl~tgk~i~i~p~~s~~t 2316 (2548)
+..|.+||.+... ...+. .|...+.+.+|+|||+.++.++.+ ..|.+||+.+++...+ ..
T Consensus 183 ~~~i~i~d~dg~~-~~~lt----------~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l------~~ 245 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVN----------RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV------AS 245 (429)
T ss_pred eEEEEEECCCCCC-ceEec----------cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE------ec
Confidence 5789999987554 23321 133679999999999999988654 3799999987753221 12
Q ss_pred ccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEE-EEeCCC
Q 000054 2317 FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIV-TGGKGG 2395 (2548)
Q Consensus 2317 ~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLV-SGS~DG 2395 (2548)
+.++... ..|+|||+.|+.+. +.+|.+.||.+... ......+..+...+....|+|+ ++.|+ ++..+|
T Consensus 246 ~~g~~~~-~~wSPDG~~La~~~--~~~g~~~Iy~~d~~-~~~~~~lt~~~~~~~~~~wSpD-------G~~i~f~s~~~g 314 (429)
T PRK01742 246 FRGHNGA-PAFSPDGSRLAFAS--SKDGVLNIYVMGAN-GGTPSQLTSGAGNNTEPSWSPD-------GQSILFTSDRSG 314 (429)
T ss_pred CCCccCc-eeECCCCCEEEEEE--ecCCcEEEEEEECC-CCCeEeeccCCCCcCCEEECCC-------CCEEEEEECCCC
Confidence 3444433 35999999888864 35777666644322 2334556667777889999999 56555 445688
Q ss_pred cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCC
Q 000054 2396 DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKD 2475 (2548)
Q Consensus 2396 tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~D 2475 (2548)
..+||++.. ..+.. ..+ .+.+ ...+|+|+|++|+.++.+
T Consensus 315 ~~~I~~~~~-~~~~~-~~l-------------------------------------~~~~--~~~~~SpDG~~ia~~~~~ 353 (429)
T PRK01742 315 SPQVYRMSA-SGGGA-SLV-------------------------------------GGRG--YSAQISADGKTLVMINGD 353 (429)
T ss_pred CceEEEEEC-CCCCe-EEe-------------------------------------cCCC--CCccCCCCCCEEEEEcCC
Confidence 999998541 11111 110 1222 346799999999888776
Q ss_pred CcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEEC
Q 000054 2476 GDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2476 GtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL 2541 (2548)
+ +.+||+.+++..... .++. ..++.|+|+| |++++.+|.+++|.+
T Consensus 354 ~-i~~~Dl~~g~~~~lt--------------~~~~------~~~~~~sPdG~~i~~~s~~g~~~~l~~ 400 (429)
T PRK01742 354 N-VVKQDLTSGSTEVLS--------------STFL------DESPSISPNGIMIIYSSTQGLGKVLQL 400 (429)
T ss_pred C-EEEEECCCCCeEEec--------------CCCC------CCCceECCCCCEEEEEEcCCCceEEEE
Confidence 5 555999988764311 1111 1234799999 888888998888875
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.2e-08 Score=130.89 Aligned_cols=207 Identities=14% Similarity=0.126 Sum_probs=139.0
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEecc--CCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCcccc
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVL--PAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQLEVGGRSN 2307 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l--~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWDl~tgk~i~ 2307 (2548)
+.-+++++.||.|..|+++.-......... ..|......-...+++++|.+ +...|+.|+.+|.|..-.........
T Consensus 305 ~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~ 384 (555)
T KOG1587|consen 305 NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP 384 (555)
T ss_pred CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc
Confidence 355889999999999988753321111100 010001112235799999998 57789999999998773332221111
Q ss_pred cccCccceeccCCcccEEE--EcCCCC-EEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCC
Q 000054 2308 VRPMESCLCFSSHAMDVSY--ITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSV 2384 (2548)
Q Consensus 2308 i~p~~s~~t~~gH~~~V~a--fSpdGs-lLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~ 2384 (2548)
...++....+..|.+.|.+ ++|-+. ++.++ .|-+|+||.... ...++..+..+...|++++|+|..
T Consensus 385 ~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~----gDW~vriWs~~~-~~~Pl~~~~~~~~~v~~vaWSptr------ 453 (555)
T KOG1587|consen 385 EVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSV----GDWTVRIWSEDV-IASPLLSLDSSPDYVTDVAWSPTR------ 453 (555)
T ss_pred cccccccccccccCcceEeeecCCCccceeeee----ccceeEeccccC-CCCcchhhhhccceeeeeEEcCcC------
Confidence 0111222345667777775 566554 55555 489999999873 256777788888889999999996
Q ss_pred CCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeC
Q 000054 2385 SPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVP 2464 (2548)
Q Consensus 2385 g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSP 2464 (2548)
..+++++..||.|.+||++. .....+... ..+....+.+.|++
T Consensus 454 pavF~~~d~~G~l~iWDLl~-~~~~Pv~s~------------------------------------~~~~~~l~~~~~s~ 496 (555)
T KOG1587|consen 454 PAVFATVDGDGNLDIWDLLQ-DDEEPVLSQ------------------------------------KVCSPALTRVRWSP 496 (555)
T ss_pred ceEEEEEcCCCceehhhhhc-cccCCcccc------------------------------------cccccccceeecCC
Confidence 67999999999999999863 222222221 12345667888999
Q ss_pred CCCEEEEEeCCCcEEEEECCC
Q 000054 2465 NTSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2465 dG~~LaSGS~DGtIrIWDl~T 2485 (2548)
.|+.|++|...|++++|++..
T Consensus 497 ~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 497 NGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CCcEEEEecCCCcEEEEEcCc
Confidence 999999999999999999963
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.6e-08 Score=116.23 Aligned_cols=204 Identities=13% Similarity=0.201 Sum_probs=153.5
Q ss_pred ccCCeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcE
Q 000054 2216 TVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTV 2295 (2548)
Q Consensus 2216 tl~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtV 2295 (2548)
..+++.+..+-|+.+---++...+-..+++.++.++..+..+.- ...|.+|+++ -++|+++=.+ .|
T Consensus 43 ~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f-----------pt~IL~VrmN--r~RLvV~Lee-~I 108 (391)
T KOG2110|consen 43 DTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFF-----------PTSILAVRMN--RKRLVVCLEE-SI 108 (391)
T ss_pred cCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEec-----------CCceEEEEEc--cceEEEEEcc-cE
Confidence 45677788888876543333333334689999988877766531 2679999997 4456666554 49
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEEEEcCC--CCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSS--GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpd--GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
.|||+++.+.+. +..+...+...+++++++ +.++|.-+. ...|.|.+||+.+ .+++..+.+|.+.+.+++
T Consensus 109 yIydI~~MklLh-----TI~t~~~n~~gl~AlS~n~~n~ylAyp~s-~t~GdV~l~d~~n--l~~v~~I~aH~~~lAala 180 (391)
T KOG2110|consen 109 YIYDIKDMKLLH-----TIETTPPNPKGLCALSPNNANCYLAYPGS-TTSGDVVLFDTIN--LQPVNTINAHKGPLAALA 180 (391)
T ss_pred EEEecccceeeh-----hhhccCCCccceEeeccCCCCceEEecCC-CCCceEEEEEccc--ceeeeEEEecCCceeEEE
Confidence 999999875443 233355667778876654 458887652 3679999999976 678889999999999999
Q ss_pred EccCCCCCCCCCCEEEEEeCCCc-EEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccC
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKGGD-VGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKA 2452 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGt-VrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~g 2452 (2548)
|+++ |.+|+|++..|+ |||++ ..+|+.+..++ .|
T Consensus 181 fs~~-------G~llATASeKGTVIRVf~---v~~G~kl~eFR-----------------------------------RG 215 (391)
T KOG2110|consen 181 FSPD-------GTLLATASEKGTVIRVFS---VPEGQKLYEFR-----------------------------------RG 215 (391)
T ss_pred ECCC-------CCEEEEeccCceEEEEEE---cCCccEeeeee-----------------------------------CC
Confidence 9999 899999999996 58999 66788777762 11
Q ss_pred -CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 000054 2453 -HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAA 2486 (2548)
Q Consensus 2453 -H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tg 2486 (2548)
--..|.+++|+|++++|++.|..++|+||.+.+.
T Consensus 216 ~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 216 TYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred ceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 1246889999999999999999999999988743
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.9e-08 Score=120.29 Aligned_cols=242 Identities=10% Similarity=0.097 Sum_probs=149.6
Q ss_pred EEEEEcCCCCEEEEE-ECCCeEEEEEcCC-CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC-CCcEEEEE
Q 000054 2223 RAFSSHPLRPFFLVG-SSNTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DGTVCTWQ 2299 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASG-S~DGsVrLWDl~t-g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-DGtVrVWD 2299 (2548)
..++++|++++|+++ ..++.|.+|+++. +.. ......+ ..+....++|+|+++++++++. ++.|.+|+
T Consensus 38 ~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~~--------~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~ 108 (330)
T PRK11028 38 QPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAAESP--------LPGSPTHISTDHQGRFLFSASYNANCVSVSP 108 (330)
T ss_pred ccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEeeeec--------CCCCceEEEECCCCCEEEEEEcCCCeEEEEE
Confidence 567888999988765 4588899999973 332 2221111 1134678999999999888764 78999999
Q ss_pred cCCCcccccccCccceeccCCcc-cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcc----eeee-ccCCCeEEEE
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAM-DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR----ASIT-CHEGGARSIS 2373 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~-~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v----~sl~-gHs~~VtSLa 2373 (2548)
+++..... . ......+... .-..++|+|+++++++ ..++.|.+||+... +... .... ........+.
T Consensus 109 ~~~~g~~~-~---~~~~~~~~~~~~~~~~~p~g~~l~v~~--~~~~~v~v~d~~~~-g~l~~~~~~~~~~~~g~~p~~~~ 181 (330)
T PRK11028 109 LDKDGIPV-A---PIQIIEGLEGCHSANIDPDNRTLWVPC--LKEDRIRLFTLSDD-GHLVAQEPAEVTTVEGAGPRHMV 181 (330)
T ss_pred ECCCCCCC-C---ceeeccCCCcccEeEeCCCCCEEEEee--CCCCEEEEEEECCC-CcccccCCCceecCCCCCCceEE
Confidence 97432111 0 1111222111 1124899999988776 46899999999752 2211 1111 1234567899
Q ss_pred EccCCCCCCCCCCEEEEEeC-CCcEEEEeCCccccCc--eeeeecCC-C-CCCCccccccccCCCCCC--cc-CCCCCce
Q 000054 2374 VFDNDLGSGSVSPLIVTGGK-GGDVGIHDFRYIATGK--TKKHKHSD-R-GGSSINTCAHADAQTGSG--SK-PGDQNGM 2445 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~-DGtVrLWDLR~l~TGk--~l~tl~~~-~-~~s~~~~~~vafSpdGk~--v~-s~D~sv~ 2445 (2548)
|+|+ +++++++.. +++|.+||+.. .+++ .+..+... . .........+.++|+|++ ++ ..++.+.
T Consensus 182 ~~pd-------g~~lyv~~~~~~~v~v~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~ 253 (330)
T PRK11028 182 FHPN-------QQYAYCVNELNSSVDVWQLKD-PHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLIS 253 (330)
T ss_pred ECCC-------CCEEEEEecCCCEEEEEEEeC-CCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEE
Confidence 9998 677766654 99999999641 1222 22222110 0 011111224678999997 33 3356788
Q ss_pred EEEccc--------CCC---CCEEEEEEeCCCCEEEEEeC-CCcEEEEECC--CCcE
Q 000054 2446 LWYIPK--------AHL---GSVTRISTVPNTSLFLTGSK-DGDVKLWDAK--AAQL 2488 (2548)
Q Consensus 2446 Iwdi~~--------gH~---~~VtsLafSPdG~~LaSGS~-DGtIrIWDl~--Tgel 2488 (2548)
+|++.. +|. .....++++|+|++|++++. +++|.+|++. ++.+
T Consensus 254 v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 254 VFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred EEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence 887632 111 13457899999999998876 8999999874 4444
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-08 Score=131.70 Aligned_cols=196 Identities=16% Similarity=0.117 Sum_probs=127.3
Q ss_pred EEEEEEcCCCCEEEEEECC---CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe-CCCcEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSN---THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LDGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~D---GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS-~DGtVrV 2297 (2548)
+...+|+|+|+.++.++.+ ..|++||+.+++... +.... +....++|+|||+.|+.++ .+|.+.+
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~----------g~~~~~~wSPDG~~La~~~~~~g~~~I 274 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFR----------GHNGAPAFSPDGSRLAFASSKDGVLNI 274 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCC----------CccCceeECCCCCEEEEEEecCCcEEE
Confidence 5788999999999977543 479999998875432 22112 2234689999999888764 6887777
Q ss_pred EE--cCCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000054 2298 WQ--LEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2298 WD--l~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
|. +.++... .+..+...+ ..|+|||+.++.++ ..++..+||++..... ....+ .+.+ ....
T Consensus 275 y~~d~~~~~~~---------~lt~~~~~~~~~~wSpDG~~i~f~s--~~~g~~~I~~~~~~~~-~~~~l-~~~~--~~~~ 339 (429)
T PRK01742 275 YVMGANGGTPS---------QLTSGAGNNTEPSWSPDGQSILFTS--DRSGSPQVYRMSASGG-GASLV-GGRG--YSAQ 339 (429)
T ss_pred EEEECCCCCeE---------eeccCCCCcCCEEECCCCCEEEEEE--CCCCCceEEEEECCCC-CeEEe-cCCC--CCcc
Confidence 64 4444311 122333222 35999999877664 3578889998764322 22222 3433 4577
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCC
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAH 2453 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH 2453 (2548)
|+|+ ++.|+.++.++ +.+||+ .+++..... ..+
T Consensus 340 ~SpD-------G~~ia~~~~~~-i~~~Dl---~~g~~~~lt------------------------------------~~~ 372 (429)
T PRK01742 340 ISAD-------GKTLVMINGDN-VVKQDL---TSGSTEVLS------------------------------------STF 372 (429)
T ss_pred CCCC-------CCEEEEEcCCC-EEEEEC---CCCCeEEec------------------------------------CCC
Confidence 8888 67888777765 555894 445432211 011
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECC--CCcEEEEe
Q 000054 2454 LGSVTRISTVPNTSLFLTGSKDGDVKLWDAK--AAQLVYHW 2492 (2548)
Q Consensus 2454 ~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~--Tgell~tL 2492 (2548)
....+.|+|+|++|+.++.+|.+.+|++. +|+.+.++
T Consensus 373 --~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l 411 (429)
T PRK01742 373 --LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARL 411 (429)
T ss_pred --CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEc
Confidence 12357799999999999999998888763 57776665
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-08 Score=118.19 Aligned_cols=228 Identities=13% Similarity=0.092 Sum_probs=158.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.|.+|++|+..+|++.....|.||.............+.. |...|+.|+|+|..++|++|+.|..-.+|...
T Consensus 13 itchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~-------Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSE-------HDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhh-------hCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 68999999999999999999999999887664444443333 45899999999999999999999999999985
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCC--CcceeeeccCCCeEEEEEccC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPT--SSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~--k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
.+.. -.|... +..+.....+ |+|.++.||+|+ ..+.|.||=.+..+. -..+.-+.+.+.|+++.|+|+
T Consensus 86 ~~~~--Wkptlv---LlRiNrAAt~V~WsP~enkFAVgS---gar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn 157 (361)
T KOG1523|consen 86 SGGT--WKPTLV---LLRINRAATCVKWSPKENKFAVGS---GARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN 157 (361)
T ss_pred CCCe--ecccee---EEEeccceeeEeecCcCceEEecc---CccEEEEEEEecccceehhhhhCCccccceeeeeccCC
Confidence 4432 122222 3333444433 899999999985 678888887764211 123344467889999999999
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCE
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSV 2457 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~V 2457 (2548)
+-++++|+.|+..|+|.. -++...... ...+.-..+.| | .+...+....+.|
T Consensus 158 -------nVLlaaGs~D~k~rVfSa-------yIK~Vdekp-ap~pWgsk~PF---G----------~lm~E~~~~ggwv 209 (361)
T KOG1523|consen 158 -------NVLLAAGSTDGKCRVFSA-------YIKGVDEKP-APTPWGSKMPF---G----------QLMSEASSSGGWV 209 (361)
T ss_pred -------cceecccccCcceeEEEE-------eeeccccCC-CCCCCccCCcH---H----------HHHHhhccCCCce
Confidence 568999999999999983 222221100 00000000000 0 1111112456799
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCc-EEEEe
Q 000054 2458 TRISTVPNTSLFLTGSKDGDVKLWDAKAAQ-LVYHW 2492 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS~DGtIrIWDl~Tge-ll~tL 2492 (2548)
..+.|+|+|..|+-.+.|+++.+=|..... .+.++
T Consensus 210 h~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~ 245 (361)
T KOG1523|consen 210 HGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSV 245 (361)
T ss_pred eeeEeCCCCCEeeEecCCCceEEeecCCCchhccch
Confidence 999999999999999999999999987654 34433
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.5e-09 Score=130.92 Aligned_cols=227 Identities=15% Similarity=0.193 Sum_probs=148.9
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcC--CCCEEEEEeccCC
Q 000054 2267 PPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS--SGSVIAAAGHSSN 2342 (2548)
Q Consensus 2267 ~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp--dGslLATgG~SS~ 2342 (2548)
..+|.+-|.+++|+.+|.+|++|+.|-.+.|||.-..+... ....||...|.+ |-| +.+++++|. .
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllh-------sI~TgHtaNIFsvKFvP~tnnriv~sgA---g 115 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLH-------SISTGHTANIFSVKFVPYTNNRIVLSGA---G 115 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhcceee-------eeecccccceeEEeeeccCCCeEEEecc---C
Confidence 34577999999999999999999999999999987544322 236789988875 444 344666654 8
Q ss_pred CCeEEEEECCCC--------CCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeee
Q 000054 2343 GINVVVWDTLAP--------PTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHK 2414 (2548)
Q Consensus 2343 DGtVrIWDl~t~--------~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl 2414 (2548)
|..|+++|+... .....+.+.+|...|..++..|.. ...+.+++.||+|+-+|+|.....+.-..
T Consensus 116 Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~------PhtfwsasEDGtirQyDiREph~c~p~~~- 188 (758)
T KOG1310|consen 116 DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG------PHTFWSASEDGTIRQYDIREPHVCNPDED- 188 (758)
T ss_pred cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCC------CceEEEecCCcceeeecccCCccCCcccc-
Confidence 999999999741 123456677999999999998884 57999999999999999884211111000
Q ss_pred cCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCC--------
Q 000054 2415 HSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPN-TSLFLTGSKDGDVKLWDAKA-------- 2485 (2548)
Q Consensus 2415 ~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPd-G~~LaSGS~DGtIrIWDl~T-------- 2485 (2548)
+......+ ...--...|++.+|. ..+|+.|+.|--.++||.+.
T Consensus 189 --------~~~~l~ny--------------------~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~ 240 (758)
T KOG1310|consen 189 --------CPSILVNY--------------------NPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSD 240 (758)
T ss_pred --------ccHHHHHh--------------------chhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCC
Confidence 00000000 111235678999995 57899999999999999531
Q ss_pred Cc----------EEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCCCc
Q 000054 2486 AQ----------LVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2486 ge----------ll~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+. ++..|...|.+ ..+|.....-..++-+.|+|+| |++-+. -.|+++|+..+.
T Consensus 241 ~~~~~~pp~~~~cv~yf~p~hlk------n~~gn~~~~~~~~t~vtfnpNGtElLvs~~g-EhVYlfdvn~~~ 306 (758)
T KOG1310|consen 241 GTMNTCPPKDCRCVRYFSPGHLK------NSQGNLDRYITCCTYVTFNPNGTELLVSWGG-EHVYLFDVNEDK 306 (758)
T ss_pred ccccCCCCcccchhheecCcccc------CcccccccceeeeEEEEECCCCcEEEEeeCC-eEEEEEeecCCC
Confidence 11 12222111111 0122111111236778999999 455444 468899987653
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.4e-09 Score=122.71 Aligned_cols=215 Identities=15% Similarity=0.168 Sum_probs=158.6
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEE
Q 000054 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVW 2349 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIW 2349 (2548)
++|+|.+|++|+..+|++..+..|.||.....+ +.+...++..|...|. +|+|..+.|++++ .|++-++|
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~-----~w~~~htls~Hd~~vtgvdWap~snrIvtcs---~drnayVw 82 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-----LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCS---HDRNAYVW 82 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCC-----CceeceehhhhCcceeEEeecCCCCceeEcc---CCCCcccc
Confidence 789999999999999999999999999987653 1223456778888776 4889999999986 89999999
Q ss_pred EC-CCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccc
Q 000054 2350 DT-LAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAH 2428 (2548)
Q Consensus 2350 Dl-~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~v 2428 (2548)
.. ..+..++...+..|+..+++|.|+|. ++.+++|+.-..|.||-+..-..-=.-+
T Consensus 83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~-------enkFAVgSgar~isVcy~E~ENdWWVsK---------------- 139 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRAATCVKWSPK-------ENKFAVGSGARLISVCYYEQENDWWVSK---------------- 139 (361)
T ss_pred ccCCCCeeccceeEEEeccceeeEeecCc-------CceEEeccCccEEEEEEEecccceehhh----------------
Confidence 98 44345567777889999999999999 7899999999999999853200000000
Q ss_pred ccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccccc------ccccc
Q 000054 2429 ADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHE------RHTFL 2502 (2548)
Q Consensus 2429 afSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs------~hsfl 2502 (2548)
.+-+.+.+.|+++.|+|++-+|++||.|+..+|+..- ++.+...-+ +-+|-
T Consensus 140 -------------------hikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSay----IK~Vdekpap~pWgsk~PFG 196 (361)
T KOG1523|consen 140 -------------------HIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY----IKGVDEKPAPTPWGSKMPFG 196 (361)
T ss_pred -------------------hhCCccccceeeeeccCCcceecccccCcceeEEEEe----eeccccCCCCCCCccCCcHH
Confidence 1125678899999999999999999999999999743 111110000 01110
Q ss_pred --cCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000054 2503 --QPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2503 --~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
-..+...+ ..|..+.|+|+| |+-.+.|+++.+=|....
T Consensus 197 ~lm~E~~~~g----gwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 197 QLMSEASSSG----GWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred HHHHhhccCC----CceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 00111222 335777999999 999999999999887665
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.7e-08 Score=125.41 Aligned_cols=187 Identities=16% Similarity=0.179 Sum_probs=124.7
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCcccc
Q 000054 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQLEVGGRSN 2307 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWDl~tgk~i~ 2307 (2548)
|.+--++.|=.-|.|.+.|....+..+.+.. ........|+++.|-| +...++.+-.+|.+.++|.+-..
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne------~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~--- 253 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNE------ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC--- 253 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhh------cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc---
Confidence 5666677887888898888765322222211 0111237899999999 45677888899999999874211
Q ss_pred cccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCE
Q 000054 2308 VRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPL 2387 (2548)
Q Consensus 2308 i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~l 2387 (2548)
+....-....+++..++... |--.. ...++..+.--.+.|+.++|+|+ +++
T Consensus 254 -----------~~t~p~~~~~k~~~~f~i~t----------~ksk~-~rNPv~~w~~~~g~in~f~FS~D-------G~~ 304 (636)
T KOG2394|consen 254 -----------GATAPSYQALKDGDQFAILT----------SKSKK-TRNPVARWHIGEGSINEFAFSPD-------GKY 304 (636)
T ss_pred -----------cCCCCcccccCCCCeeEEee----------eeccc-cCCccceeEeccccccceeEcCC-------Cce
Confidence 00111111224555554432 11111 01344444445669999999997 899
Q ss_pred EEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCC
Q 000054 2388 IVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTS 2467 (2548)
Q Consensus 2388 LVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~ 2467 (2548)
|++.+.||.+||||+. +.+.+.. ++.--+...||+|+|||+
T Consensus 305 LA~VSqDGfLRvF~fd---t~eLlg~------------------------------------mkSYFGGLLCvcWSPDGK 345 (636)
T KOG2394|consen 305 LATVSQDGFLRIFDFD---TQELLGV------------------------------------MKSYFGGLLCVCWSPDGK 345 (636)
T ss_pred EEEEecCceEEEeecc---HHHHHHH------------------------------------HHhhccceEEEEEcCCcc
Confidence 9999999999999953 2222211 133456889999999999
Q ss_pred EEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2468 LFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2468 ~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
|+++|++|-.|.||.+..++.+..-
T Consensus 346 yIvtGGEDDLVtVwSf~erRVVARG 370 (636)
T KOG2394|consen 346 YIVTGGEDDLVTVWSFEERRVVARG 370 (636)
T ss_pred EEEecCCcceEEEEEeccceEEEec
Confidence 9999999999999999999988744
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.4e-08 Score=118.92 Aligned_cols=286 Identities=14% Similarity=0.170 Sum_probs=178.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc--eeEEEeccCCCCCCCCC-----CCCCeEEEEEccCC--CEEEEEeCC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK--ATATYGVLPAANVPPPY-----ALASISALQFDHYG--HRFASAALD 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~--~l~t~~~l~ghs~~~~~-----H~~~VtsVaFSPdG--~~LaSGS~D 2292 (2548)
+.++.|...|.+||||..+|.|.++.-.... ....+..++.|.....+ -...|..++|.+++ ..++....|
T Consensus 28 is~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNd 107 (433)
T KOG1354|consen 28 ISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTND 107 (433)
T ss_pred eeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCC
Confidence 6889999999999999999999999866322 22233334444322111 13579999998864 567888999
Q ss_pred CcEEEEEcCCCcccc----c-------------ccC----c------cc-eeccCCcccEEE--EcCCCCEEEEEeccCC
Q 000054 2293 GTVCTWQLEVGGRSN----V-------------RPM----E------SC-LCFSSHAMDVSY--ITSSGSVIAAAGHSSN 2342 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~----i-------------~p~----~------s~-~t~~gH~~~V~a--fSpdGslLATgG~SS~ 2342 (2548)
++|++|.+....... . .|. . +. ..-.+|+.-|.+ ++.|+..++++ +
T Consensus 108 ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA----D 183 (433)
T KOG1354|consen 108 KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA----D 183 (433)
T ss_pred cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec----c
Confidence 999999986432110 0 000 0 00 012345555543 66788899997 7
Q ss_pred CCeEEEEECCCCCCC-cceeeecc-----CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecC
Q 000054 2343 GINVVVWDTLAPPTS-SRASITCH-----EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHS 2416 (2548)
Q Consensus 2343 DGtVrIWDl~t~~~k-~v~sl~gH-----s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~ 2416 (2548)
|=.|.+|.+...+.. .+..++.+ +.-|++..|+|.. .++++-.++.|+|++-|+|+.. -|..+...
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~------cn~f~YSSSKGtIrLcDmR~~a--LCd~hsKl 255 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH------CNVFVYSSSKGTIRLCDMRQSA--LCDAHSKL 255 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH------ccEEEEecCCCcEEEeechhhh--hhcchhhh
Confidence 999999998753222 13333333 3468999999996 6799999999999999988411 11111100
Q ss_pred CCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC-CCCcEEEEeccc
Q 000054 2417 DRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDA-KAAQLVYHWSKL 2495 (2548)
Q Consensus 2417 ~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl-~Tgell~tL~~~ 2495 (2548)
...... |.. -+.+.+--..|..+.|+++|+|+++-.. -+|++||+ ...+++.+++ .
T Consensus 256 fEeped---------p~~------------rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~-v 312 (433)
T KOG1354|consen 256 FEEPED---------PSS------------RSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYP-V 312 (433)
T ss_pred hccccC---------Ccc------------hhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEe-e
Confidence 000000 000 0012334457889999999999987643 58999999 4677777763 2
Q ss_pred ccc--cccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCcc
Q 000054 2496 HER--HTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2496 Hs~--hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~l 2546 (2548)
|.. ..+ .... -.+.|-+ =..++|+.++ ++|||....++++++..|..
T Consensus 313 h~~lr~kL-c~lY--EnD~Ifd-KFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 313 HEYLRSKL-CSLY--ENDAIFD-KFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred hHhHHHHH-HHHh--hccchhh-eeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 211 000 0000 1122212 2456898887 88999999999999877653
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-07 Score=112.39 Aligned_cols=237 Identities=17% Similarity=0.182 Sum_probs=148.1
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEE-EEeCC------CcE
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALD------GTV 2295 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~La-SGS~D------GtV 2295 (2548)
..++|+.|...+++|..+| .+||+.+--+....-+- ...+ -.+..|-| ..++++ +||.+ ..|
T Consensus 9 lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~------~~~G--~~~veMLf--R~N~laLVGGg~~pky~pNkv 77 (346)
T KOG2111|consen 9 LSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQF------IDGG--FKIVEMLF--RSNYLALVGGGSRPKYPPNKV 77 (346)
T ss_pred eEEEEccCCceEEEEecCc-eEEEecCchhhhhhhcc------ccCc--hhhhhHhh--hhceEEEecCCCCCCCCCceE
Confidence 5588989988888887776 89999775221111000 0000 11222222 233343 44443 379
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc--CCCeEEEE
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH--EGGARSIS 2373 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH--s~~VtSLa 2373 (2548)
.|||=....++. ...+ ...|.++.-....|++. ..+.|.+|..... .+.++.+... ..++-+++
T Consensus 78 iIWDD~k~~~i~------el~f---~~~I~~V~l~r~riVvv----l~~~I~VytF~~n-~k~l~~~et~~NPkGlC~~~ 143 (346)
T KOG2111|consen 78 IIWDDLKERCII------ELSF---NSEIKAVKLRRDRIVVV----LENKIYVYTFPDN-PKLLHVIETRSNPKGLCSLC 143 (346)
T ss_pred EEEecccCcEEE------EEEe---ccceeeEEEcCCeEEEE----ecCeEEEEEcCCC-hhheeeeecccCCCceEeec
Confidence 999933222211 1112 23454433445666666 5789999998642 3334444322 23333333
Q ss_pred EccCCCCCCCCCCEEEE-EeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccC
Q 000054 2374 VFDNDLGSGSVSPLIVT-GGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKA 2452 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVS-GS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~g 2452 (2548)
|.. ...+||- |-.-|.|+|-|+.....+. ... ..+
T Consensus 144 --~~~-----~k~~LafPg~k~GqvQi~dL~~~~~~~-p~~------------------------------------I~A 179 (346)
T KOG2111|consen 144 --PTS-----NKSLLAFPGFKTGQVQIVDLASTKPNA-PSI------------------------------------INA 179 (346)
T ss_pred --CCC-----CceEEEcCCCccceEEEEEhhhcCcCC-ceE------------------------------------EEc
Confidence 321 1334444 4467899999975322210 111 178
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCc-EEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEE
Q 000054 2453 HLGSVTRISTVPNTSLFLTGSKDGD-VKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLS 2529 (2548)
Q Consensus 2453 H~~~VtsLafSPdG~~LaSGS~DGt-IrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaS 2529 (2548)
|.+.|.|++.+-+|..+||+|..|+ |||||..+|++++++. .|...+.|.+++|||+. |+.
T Consensus 180 H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R----------------RG~d~A~iy~iaFSp~~s~Lav 243 (346)
T KOG2111|consen 180 HDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR----------------RGVDRADIYCIAFSPNSSWLAV 243 (346)
T ss_pred ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee----------------cCCchheEEEEEeCCCccEEEE
Confidence 9999999999999999999999996 7999999999999882 23334779999999999 888
Q ss_pred EECCCcEEEEECCCC
Q 000054 2530 CGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2530 GS~DGtIrIWDL~sg 2544 (2548)
+|+-||+.|+.+.+.
T Consensus 244 sSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 244 SSDKGTLHIFSLRDT 258 (346)
T ss_pred EcCCCeEEEEEeecC
Confidence 889999999999764
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.4e-09 Score=120.48 Aligned_cols=155 Identities=14% Similarity=0.290 Sum_probs=118.3
Q ss_pred EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCC-cccccccC
Q 000054 2233 FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVG-GRSNVRPM 2311 (2548)
Q Consensus 2233 ~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tg-k~i~i~p~ 2311 (2548)
++++|-++|.|.+||+.++..+..+.....-..+...|..+|.++.+.+.-+.=++|+.+..+..|.++.. ....+
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~--- 243 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI--- 243 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc---
Confidence 56689999999999999986555544322222356678899999999986666678888889999998643 11111
Q ss_pred ccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEE
Q 000054 2312 ESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTG 2391 (2548)
Q Consensus 2312 ~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSG 2391 (2548)
....++....-.-..+.||++.+||+| .|+.|++|..++ .+++..++.|.++|++++|+|+ ..+++.+
T Consensus 244 ~~e~~lknpGv~gvrIRpD~KIlATAG---WD~RiRVyswrt--l~pLAVLkyHsagvn~vAfspd-------~~lmAaa 311 (323)
T KOG0322|consen 244 RKEITLKNPGVSGVRIRPDGKILATAG---WDHRIRVYSWRT--LNPLAVLKYHSAGVNAVAFSPD-------CELMAAA 311 (323)
T ss_pred cceEEecCCCccceEEccCCcEEeecc---cCCcEEEEEecc--CCchhhhhhhhcceeEEEeCCC-------Cchhhhc
Confidence 112222222212224789999999999 999999999987 7889999999999999999999 6799999
Q ss_pred eCCCcEEEEeC
Q 000054 2392 GKGGDVGIHDF 2402 (2548)
Q Consensus 2392 S~DGtVrLWDL 2402 (2548)
+.|+.|.+|++
T Consensus 312 skD~rISLWkL 322 (323)
T KOG0322|consen 312 SKDARISLWKL 322 (323)
T ss_pred cCCceEEeeec
Confidence 99999999984
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.8e-08 Score=116.19 Aligned_cols=247 Identities=11% Similarity=0.024 Sum_probs=159.3
Q ss_pred CCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCcccee-ccCCcccEEE--EcCCCCEEEEEeccCCCC
Q 000054 2268 PYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLC-FSSHAMDVSY--ITSSGSVIAAAGHSSNGI 2344 (2548)
Q Consensus 2268 ~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t-~~gH~~~V~a--fSpdGslLATgG~SS~DG 2344 (2548)
.+|.+-|.++.|+.++++|++|+.|..+++|.++..-...+ ..+.+. -..|...|.+ |......+.+|+ .++
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~--~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~---~~~ 127 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT--PKPIGVMEHPHRSNIFSLEFDLENRFLYSGE---RWG 127 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC--CCCceeccCccccceEEEEEccCCeeEecCC---Ccc
Confidence 35789999999999999999999999999999874321111 011111 2234456655 776677888887 899
Q ss_pred eEEEEECCCCCCCcceeee--ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCC
Q 000054 2345 NVVVWDTLAPPTSSRASIT--CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSS 2422 (2548)
Q Consensus 2345 tVrIWDl~t~~~k~v~sl~--gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~ 2422 (2548)
+|...|+.+ .+.+..+. ...+.|..+..+|. .+.+++.+.+|.|.+||.|.....-.+... ....
T Consensus 128 ~VI~HDiEt--~qsi~V~~~~~~~~~VY~m~~~P~-------DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~----AN~~ 194 (609)
T KOG4227|consen 128 TVIKHDIET--KQSIYVANENNNRGDVYHMDQHPT-------DNTLIVVTRAKLVSFIDNRDRQNPISLVLP----ANSG 194 (609)
T ss_pred eeEeeeccc--ceeeeeecccCcccceeecccCCC-------CceEEEEecCceEEEEeccCCCCCCceeee----cCCC
Confidence 999999987 34443332 23458999999998 578999999999999998753311111111 0111
Q ss_pred ccccccccCCCCCC---ccCCCCCceEEEccc------------CCCC---CEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 000054 2423 INTCAHADAQTGSG---SKPGDQNGMLWYIPK------------AHLG---SVTRISTVPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2423 ~~~~~vafSpdGk~---v~s~D~sv~Iwdi~~------------gH~~---~VtsLafSPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
...-.+-|.|.... +....+.+.+||+.. +-.. .-.++.|+|+|..|.+--...--..||+-
T Consensus 195 ~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~ 274 (609)
T KOG4227|consen 195 KNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFI 274 (609)
T ss_pred ccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeee
Confidence 11223345554332 555666678888522 1111 23567899999988877555555678877
Q ss_pred CCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCC
Q 000054 2485 AAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2485 Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~s 2543 (2548)
+.++. .++..|-. .|. ...+.+.+++|-.+. ++||++|-.|.+|.++.
T Consensus 275 S~R~~-V~k~D~N~--------~GY--~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 275 SQRCF-VLKSDHNP--------NGY--CNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPR 323 (609)
T ss_pred cccce-eEeccCCC--------Ccc--eeeeeeeeeeeecceeeeccCcccceEEEecCC
Confidence 64332 23212211 111 122446677888887 99999999999999974
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.8e-07 Score=117.36 Aligned_cols=285 Identities=13% Similarity=0.115 Sum_probs=183.8
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
.++.+++.|.+....-. ..+.+|+..++. ....... ....|...+++.+++|+++++++|..||.|.+|.--.
T Consensus 164 ~~I~~~~~ge~~~i~~~-~~~~~~~v~~~~--~~~~~~~----~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~ 236 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHM-CKIHIYFVPKHT--KHTSSRD----ITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFG 236 (792)
T ss_pred ccEEEcCCceEEEEEEe-eeEEEEEecccc--eeeccch----hhhhhcccceeEEeccccceEEEeccCCcEEEEeccc
Confidence 56777788876665443 458889888755 1111111 2344667799999999999999999999999997543
Q ss_pred CcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCC
Q 000054 2303 GGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLG 2380 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg 2380 (2548)
.+ ....+..++.-|...|.+ |+++|.++++|| ..+.+.+|.+.++. .+-+..-.+.|..+.++|+
T Consensus 237 ~~----~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG---~E~VLv~Wq~~T~~---kqfLPRLgs~I~~i~vS~d--- 303 (792)
T KOG1963|consen 237 SS----DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG---REGVLVLWQLETGK---KQFLPRLGSPILHIVVSPD--- 303 (792)
T ss_pred cc----cccccceEEEecccccceeEEecCCceEeecc---cceEEEEEeecCCC---cccccccCCeeEEEEEcCC---
Confidence 11 111244568889888874 899999999999 89999999998743 3334445689999999998
Q ss_pred CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCC----CCCCCccccccccCCC-CCC-ccCCCCCceEEEccc---
Q 000054 2381 SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSD----RGGSSINTCAHADAQT-GSG-SKPGDQNGMLWYIPK--- 2451 (2548)
Q Consensus 2381 ~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~----~~~s~~~~~~vafSpd-Gk~-v~s~D~sv~Iwdi~~--- 2451 (2548)
+.+.+....|..|.+-....+.....+..+... ........+.+.++|. +.. ..+..+.+.+|+..+
T Consensus 304 ----s~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~ 379 (792)
T KOG1963|consen 304 ----SDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDST 379 (792)
T ss_pred ----CCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccce
Confidence 678888888999999885433333334333111 0011222334455552 222 445556666666322
Q ss_pred ----------------CCCCCEEEEEEeCCCCEEEEEeC--------CC--cEEEEECCCCcEEEEecccccccccccCc
Q 000054 2452 ----------------AHLGSVTRISTVPNTSLFLTGSK--------DG--DVKLWDAKAAQLVYHWSKLHERHTFLQPS 2505 (2548)
Q Consensus 2452 ----------------gH~~~VtsLafSPdG~~LaSGS~--------DG--tIrIWDl~Tgell~tL~~~Hs~hsfl~~t 2505 (2548)
.+.-.+++++.+-.|.+++|+-. || .+|+|-......-..+.. ..
T Consensus 380 i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T---------~I 450 (792)
T KOG1963|consen 380 IYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNT---------KI 450 (792)
T ss_pred eeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEE---------EE
Confidence 12335778888888999988643 44 467787654433322210 01
Q ss_pred ccCCCCceeecEEEEEEcCC---eEEEEECCCcEEEEECCC
Q 000054 2506 SRGFGGVVRAGVTDIQVVSR---GFLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2506 l~GH~~~V~a~VtsLafSPd---GLaSGS~DGtIrIWDL~s 2543 (2548)
-..|+..+-+. +..++. +.+|+|.||.+|||-+.+
T Consensus 451 ~~PH~~~~vat---~~~~~~rs~~~vta~~dg~~KiW~~~~ 488 (792)
T KOG1963|consen 451 NNPHGNAFVAT---IFLNPTRSVRCVTASVDGDFKIWVFTD 488 (792)
T ss_pred ecCCCceeEEE---EEecCcccceeEEeccCCeEEEEEEec
Confidence 24466544232 333333 388999999999999854
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-07 Score=126.44 Aligned_cols=214 Identities=18% Similarity=0.176 Sum_probs=137.8
Q ss_pred CCCCeEEEEEccC-CCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeE
Q 000054 2270 ALASISALQFDHY-GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2270 H~~~VtsVaFSPd-G~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtV 2346 (2548)
|...|..++.++. +.+|+||+.||+|++|+.+.-... .....+..++..-...+. ...+.++.+|.++ .||.|
T Consensus 1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~-~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t---~DG~v 1122 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE-GGSARSELTYSPEGSRVEKVTMCGNGDQFAVST---KDGSV 1122 (1431)
T ss_pred ccccccceeecCCCCceEEEecCCceEEEeeehhhhcC-cceeeeeEEEeccCCceEEEEeccCCCeEEEEc---CCCeE
Confidence 5577888888775 599999999999999998643211 012223333333333443 3567888999985 99999
Q ss_pred EEEECCCCCCC-----cceeeeccC-CCeEEE-EEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCC
Q 000054 2347 VVWDTLAPPTS-----SRASITCHE-GGARSI-SVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRG 2419 (2548)
Q Consensus 2347 rIWDl~t~~~k-----~v~sl~gHs-~~VtSL-afsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~ 2419 (2548)
++.++...... +......+. +.+.++ ++.... .+..++.+...+.|..||+|+......++.
T Consensus 1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~-----~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~------ 1191 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIV-----QSHVLVYATDLSRIVSWDTRMRHDAWRLKN------ 1191 (1431)
T ss_pred EEEEccccccccceeeeeecccccCCCceEEeecccccc-----cceeEEEEEeccceEEecchhhhhHHhhhc------
Confidence 99998752111 112222232 233333 333222 134888899999999999875211111111
Q ss_pred CCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccccccc
Q 000054 2420 GSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERH 2499 (2548)
Q Consensus 2420 ~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~h 2499 (2548)
....|.|++++.+|.+.++++|+..|.+.+||++-+.++..+.
T Consensus 1192 -------------------------------~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~------ 1234 (1431)
T KOG1240|consen 1192 -------------------------------QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE------ 1234 (1431)
T ss_pred -------------------------------CccccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc------
Confidence 2345789999999999999999999999999999999988773
Q ss_pred ccccCcccCCCCceeecEEEEEEc---CCe---EEEEE-CCCcEEEEECCCCcc
Q 000054 2500 TFLQPSSRGFGGVVRAGVTDIQVV---SRG---FLSCG-GDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2500 sfl~~tl~GH~~~V~a~VtsLafS---PdG---LaSGS-~DGtIrIWDL~sg~l 2546 (2548)
.++. +.+..+..+ |.. +.+++ ..+-|.+|++.+|..
T Consensus 1235 -------~P~~----~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1235 -------HPAR----APIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred -------Cccc----CCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 1122 222333333 322 44444 678899999998854
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.7e-06 Score=110.47 Aligned_cols=217 Identities=12% Similarity=0.128 Sum_probs=135.0
Q ss_pred CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC---CCcEEEEEcCCCcccccccCccceec
Q 000054 2241 THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL---DGTVCTWQLEVGGRSNVRPMESCLCF 2317 (2548)
Q Consensus 2241 GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~---DGtVrVWDl~tgk~i~i~p~~s~~t~ 2317 (2548)
..|.++|.+......... +...+.+.+|+|||+.|+..+. +..|.+|++.+++...+. .+
T Consensus 179 ~~l~~~d~dg~~~~~lt~-----------~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~------~~ 241 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHR-----------SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA------SF 241 (429)
T ss_pred eeEEEEcCCCCCCEEeec-----------CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc------CC
Confidence 368888887554322211 2367999999999999987643 357899999877532211 13
Q ss_pred cCCcccEEEEcCCCCEEEEEeccCCCC--eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeC-C
Q 000054 2318 SSHAMDVSYITSSGSVIAAAGHSSNGI--NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGK-G 2394 (2548)
Q Consensus 2318 ~gH~~~V~afSpdGslLATgG~SS~DG--tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~-D 2394 (2548)
.++... ..|+|||+.|+... +.+| .|.+||+.+ ++ ...+..+...+....|+|+ ++.|+..+. +
T Consensus 242 ~~~~~~-~~~SPDG~~La~~~--~~~g~~~I~~~d~~t--g~-~~~lt~~~~~~~~~~wSPD-------G~~I~f~s~~~ 308 (429)
T PRK03629 242 PRHNGA-PAFSPDGSKLAFAL--SKTGSLNLYVMDLAS--GQ-IRQVTDGRSNNTEPTWFPD-------SQNLAYTSDQA 308 (429)
T ss_pred CCCcCC-eEECCCCCEEEEEE--cCCCCcEEEEEECCC--CC-EEEccCCCCCcCceEECCC-------CCEEEEEeCCC
Confidence 344333 35999999888654 1344 588899875 33 3334444556788999999 677766554 4
Q ss_pred CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeC
Q 000054 2395 GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSK 2474 (2548)
Q Consensus 2395 GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~ 2474 (2548)
|...+|.+. +.+++.. .+ ..+...+....|+|+|++++..+.
T Consensus 309 g~~~Iy~~d-~~~g~~~-~l------------------------------------t~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 309 GRPQVYKVN-INGGAPQ-RI------------------------------------TWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred CCceEEEEE-CCCCCeE-Ee------------------------------------ecCCCCccCEEECCCCCEEEEEEc
Confidence 566666532 3333321 11 112223456889999999887665
Q ss_pred C---CcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCc---EEEEECCCCc
Q 000054 2475 D---GDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGS---VKLIQLEDYQ 2545 (2548)
Q Consensus 2475 D---GtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGt---IrIWDL~sg~ 2545 (2548)
+ ..|.+||+.+++.. .+. ..+. ..+..|+||| |+.++.|+. +.+++++++.
T Consensus 351 ~~g~~~I~~~dl~~g~~~-~Lt-------------~~~~------~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~ 409 (429)
T PRK03629 351 NGGQQHIAKQDLATGGVQ-VLT-------------DTFL------DETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF 409 (429)
T ss_pred cCCCceEEEEECCCCCeE-EeC-------------CCCC------CCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence 3 35888999888643 331 1110 1123799999 777776654 7778876543
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-07 Score=124.78 Aligned_cols=201 Identities=14% Similarity=0.134 Sum_probs=143.5
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEEC
Q 000054 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl 2351 (2548)
+.|....+.-+..+++.+..+..+.+||...+......+ ....+.. -...+.-.+++.-++++|. --+.|.+|+.
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~-~~er~~l-~~~~~~g~s~~~~~i~~gs---v~~~iivW~~ 162 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQ-SDERCTL-YSSLIIGDSAEELYIASGS---VFGEIIVWKP 162 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcC-CCceEEE-EeEEEEeccCcEEEEEecc---ccccEEEEec
Confidence 455555666678889999999999999997653221110 0000000 0011112566666777764 7789999998
Q ss_pred CCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccC
Q 000054 2352 LAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADA 2431 (2548)
Q Consensus 2352 ~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafS 2431 (2548)
.. +..++ .+.+|.+.|.++.++.+ |.++++.+.|.++|+|++ .+++....
T Consensus 163 ~~-dn~p~-~l~GHeG~iF~i~~s~d-------g~~i~s~SdDRsiRlW~i---~s~~~~~~------------------ 212 (967)
T KOG0974|consen 163 HE-DNKPI-RLKGHEGSIFSIVTSLD-------GRYIASVSDDRSIRLWPI---DSREVLGC------------------ 212 (967)
T ss_pred cc-cCCcc-eecccCCceEEEEEccC-------CcEEEEEecCcceeeeec---ccccccCc------------------
Confidence 73 23333 67899999999999988 889999999999999994 44443321
Q ss_pred CCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCC
Q 000054 2432 QTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGG 2511 (2548)
Q Consensus 2432 pdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~ 2511 (2548)
..-+|...|..+.|+|+ .++|++.|.+.++|+.. +..+.++ .+|.+
T Consensus 213 -----------------~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y--------------~~h~g 258 (967)
T KOG0974|consen 213 -----------------TGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVY--------------DEHSG 258 (967)
T ss_pred -----------------ccccccceeEEEEeccc--eeEEeccceEEEEEecc-cceehhh--------------hhhhh
Confidence 01579999999999998 99999999999999765 3433344 45544
Q ss_pred ceeecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000054 2512 VVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2512 ~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
..++.++..++. ++|++.||++++|++.+.
T Consensus 259 ---~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 259 ---KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred ---cceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 336777888888 789999999999998754
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.1e-07 Score=106.97 Aligned_cols=150 Identities=17% Similarity=0.220 Sum_probs=102.8
Q ss_pred EEcCCCCEEEEEecc-------CCCCeEEEEECCCCCCCcceeeec-cCCCeEEEEEccCCCCCCCCCCEE--EEEeCCC
Q 000054 2326 YITSSGSVIAAAGHS-------SNGINVVVWDTLAPPTSSRASITC-HEGGARSISVFDNDLGSGSVSPLI--VTGGKGG 2395 (2548)
Q Consensus 2326 afSpdGslLATgG~S-------S~DGtVrIWDl~t~~~k~v~sl~g-Hs~~VtSLafsP~dlg~gs~g~lL--VSGS~DG 2395 (2548)
.|+++|+.|+.-... +.-+...+|.++.. ...+..+.- ..+.|.+++|+|+ ++.+ ++|..++
T Consensus 12 ~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~-~~~~~~i~l~~~~~I~~~~WsP~-------g~~favi~g~~~~ 83 (194)
T PF08662_consen 12 HWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEK-NIPVESIELKKEGPIHDVAWSPN-------GNEFAVIYGSMPA 83 (194)
T ss_pred EecccCCEEEEEEEEeeccCcceEEeeEEEEEEecC-CCccceeeccCCCceEEEEECcC-------CCEEEEEEccCCc
Confidence 377888766654310 01134556666443 234444443 3457999999999 5554 3455788
Q ss_pred cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeC-
Q 000054 2396 DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSK- 2474 (2548)
Q Consensus 2396 tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~- 2474 (2548)
.|.+||++ ++.+..+ +...+..+.|+|+|++|++|+.
T Consensus 84 ~v~lyd~~----~~~i~~~--------------------------------------~~~~~n~i~wsP~G~~l~~~g~~ 121 (194)
T PF08662_consen 84 KVTLYDVK----GKKIFSF--------------------------------------GTQPRNTISWSPDGRFLVLAGFG 121 (194)
T ss_pred ccEEEcCc----ccEeEee--------------------------------------cCCCceEEEECCCCCEEEEEEcc
Confidence 99999953 3444443 3456788999999999999875
Q ss_pred --CCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEE------CCCcEEEEECCCC
Q 000054 2475 --DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCG------GDGSVKLIQLEDY 2544 (2548)
Q Consensus 2475 --DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS------~DGtIrIWDL~sg 2544 (2548)
.|.|.+||+++.+.+.+.. |. .++.++|+|+| +++++ .|+.++||++.+.
T Consensus 122 n~~G~l~~wd~~~~~~i~~~~---------------~~-----~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 122 NLNGDLEFWDVRKKKKISTFE---------------HS-----DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred CCCcEEEEEECCCCEEeeccc---------------cC-----cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 4679999999888887551 22 24678999999 66554 3899999999765
Q ss_pred c
Q 000054 2545 Q 2545 (2548)
Q Consensus 2545 ~ 2545 (2548)
.
T Consensus 182 ~ 182 (194)
T PF08662_consen 182 L 182 (194)
T ss_pred E
Confidence 4
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.7e-07 Score=111.10 Aligned_cols=238 Identities=12% Similarity=0.175 Sum_probs=155.0
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccccc
Q 000054 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNV 2308 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i 2308 (2548)
+....+...+.|..+..+.+............. ......+.|..++.. ...|++|-.+|.+.+|....+....
T Consensus 67 ~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~----~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hs- 139 (412)
T KOG3881|consen 67 GETEVLNARSADDDLPKFVIEEFEISSSLDDAK----TVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHS- 139 (412)
T ss_pred CceeEeeccccCcccccccccCCcccccccccc----ccccccccccchhhc--CCEEEEEecCCcEEEEeccCCcccc-
Confidence 334455555566667777766554433321100 011123556555543 4568999999999999998553111
Q ss_pred ccCccceeccCCcccEEE---EcCCCCEEEEEeccCCC--CeEEEEECCCCCCCcceeeecc-----------CCCeEEE
Q 000054 2309 RPMESCLCFSSHAMDVSY---ITSSGSVIAAAGHSSNG--INVVVWDTLAPPTSSRASITCH-----------EGGARSI 2372 (2548)
Q Consensus 2309 ~p~~s~~t~~gH~~~V~a---fSpdGslLATgG~SS~D--GtVrIWDl~t~~~k~v~sl~gH-----------s~~VtSL 2372 (2548)
.+ ...+..+ ..+.. ...+..++++|| .. ..++|||+.. . .+.+.+- .-.++++
T Consensus 140 s~---l~~la~g-~g~~~~r~~~~~p~Iva~GG---ke~~n~lkiwdle~--~--~qiw~aKNvpnD~L~LrVPvW~tdi 208 (412)
T KOG3881|consen 140 SK---LIKLATG-PGLYDVRQTDTDPYIVATGG---KENINELKIWDLEQ--S--KQIWSAKNVPNDRLGLRVPVWITDI 208 (412)
T ss_pred cc---ceeeecC-CceeeeccCCCCCceEecCc---hhcccceeeeeccc--c--eeeeeccCCCCccccceeeeeeccc
Confidence 00 0111111 12221 233445777777 56 7899999975 2 3333321 1245678
Q ss_pred EEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccC
Q 000054 2373 SVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKA 2452 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~g 2452 (2548)
.|.+.+ ....+++++.-+.|++||.+ ...+++..+ .-
T Consensus 209 ~Fl~g~-----~~~~fat~T~~hqvR~YDt~--~qRRPV~~f------------------------------------d~ 245 (412)
T KOG3881|consen 209 RFLEGS-----PNYKFATITRYHQVRLYDTR--HQRRPVAQF------------------------------------DF 245 (412)
T ss_pred eecCCC-----CCceEEEEecceeEEEecCc--ccCcceeEe------------------------------------cc
Confidence 887763 25699999999999999965 122333333 22
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEE
Q 000054 2453 HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSC 2530 (2548)
Q Consensus 2453 H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSG 2530 (2548)
-+.+|+++...|+|+++++|..-|.+..||++++++.... +.|..+ .+.+|..+|.+ +++|
T Consensus 246 ~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~-------------~kg~tG----sirsih~hp~~~~las~ 308 (412)
T KOG3881|consen 246 LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG-------------LKGITG----SIRSIHCHPTHPVLASC 308 (412)
T ss_pred ccCcceeeeecCCCcEEEEecccchhheecccCceeeccc-------------cCCccC----CcceEEEcCCCceEEee
Confidence 4678999999999999999999999999999999887542 355554 35677899997 8899
Q ss_pred ECCCcEEEEECCCC
Q 000054 2531 GGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2531 S~DGtIrIWDL~sg 2544 (2548)
|-|..|||+|+++.
T Consensus 309 GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 309 GLDRYVRIHDIKTR 322 (412)
T ss_pred ccceeEEEeecccc
Confidence 99999999999984
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.5e-07 Score=115.55 Aligned_cols=200 Identities=14% Similarity=0.132 Sum_probs=122.4
Q ss_pred EEEEEEcCCCCEEEEEE---CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCC--cE
Q 000054 2222 TRAFSSHPLRPFFLVGS---SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDG--TV 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS---~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DG--tV 2295 (2548)
+...+|+|||+.|+..+ .+..|.+|++.+++.... ..++ +.+...+|+|||+.|+.. +.+| .|
T Consensus 201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~----------~~~~~~~~SPDG~~La~~~~~~g~~~I 269 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFP----------RHNGAPAFSPDGSKLAFALSKTGSLNL 269 (429)
T ss_pred eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCC----------CCcCCeEECCCCCEEEEEEcCCCCcEE
Confidence 57899999999988643 345799999988764322 1111 234568999999988865 4455 58
Q ss_pred EEEEcCCCcccccccCccceeccCCcc-cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAM-DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~-~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
.+||+++++.... ...+.. .-..|+|||+.|+.+. ..++...||.+....+ ....+..+........|
T Consensus 270 ~~~d~~tg~~~~l--------t~~~~~~~~~~wSPDG~~I~f~s--~~~g~~~Iy~~d~~~g-~~~~lt~~~~~~~~~~~ 338 (429)
T PRK03629 270 YVMDLASGQIRQV--------TDGRSNNTEPTWFPDSQNLAYTS--DQAGRPQVYKVNINGG-APQRITWEGSQNQDADV 338 (429)
T ss_pred EEEECCCCCEEEc--------cCCCCCcCceEECCCCCEEEEEe--CCCCCceEEEEECCCC-CeEEeecCCCCccCEEE
Confidence 8889987643221 111111 1125999999887764 1345555554332212 23344444455667889
Q ss_pred ccCCCCCCCCCCEEEEEeCC---CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc
Q 000054 2375 FDNDLGSGSVSPLIVTGGKG---GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK 2451 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~D---GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~ 2451 (2548)
+|+ ++.++..+.+ ..|.+|| +.+++. +.+. .
T Consensus 339 SpD-------G~~Ia~~~~~~g~~~I~~~d---l~~g~~-~~Lt-----------------------------------~ 372 (429)
T PRK03629 339 SSD-------GKFMVMVSSNGGQQHIAKQD---LATGGV-QVLT-----------------------------------D 372 (429)
T ss_pred CCC-------CCEEEEEEccCCCceEEEEE---CCCCCe-EEeC-----------------------------------C
Confidence 998 6777665543 3577888 344432 2220 0
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCc---EEEEECCCCcEEEEe
Q 000054 2452 AHLGSVTRISTVPNTSLFLTGSKDGD---VKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS~DGt---IrIWDl~Tgell~tL 2492 (2548)
.+ ......|+|||++|+.++.|+. +.++++. |+....+
T Consensus 373 ~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l 413 (429)
T PRK03629 373 TF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARL 413 (429)
T ss_pred CC--CCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEEC
Confidence 01 1225679999999999988764 6777774 5544444
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.4e-08 Score=119.83 Aligned_cols=246 Identities=13% Similarity=0.103 Sum_probs=145.5
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE-EcCCCCEEEEEeccCCCCeEEE
Q 000054 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY-ITSSGSVIAAAGHSSNGINVVV 2348 (2548)
Q Consensus 2270 H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a-fSpdGslLATgG~SS~DGtVrI 2348 (2548)
|...|.++.|+.+...+.+++.+..++-||+.+.................|...-.. -......++.+ |.||.+.|
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~---s~DGkf~i 89 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLIC---SNDGRFVI 89 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEE---cCCceEEE
Confidence 567788999998887777766666666667654422111100000001112110000 01122355555 38999988
Q ss_pred EECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccc
Q 000054 2349 WDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAH 2428 (2548)
Q Consensus 2349 WDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~v 2428 (2548)
-+-. ++....+.+|.+.+.+-.|+|+ |.-|+|+|.||.|++|.- +|....++ ........++
T Consensus 90 l~k~---~rVE~sv~AH~~A~~~gRW~~d-------GtgLlt~GEDG~iKiWSr----sGMLRStl----~Q~~~~v~c~ 151 (737)
T KOG1524|consen 90 LNKS---ARVERSISAHAAAISSGRWSPD-------GAGLLTAGEDGVIKIWSR----SGMLRSTV----VQNEESIRCA 151 (737)
T ss_pred eccc---chhhhhhhhhhhhhhhcccCCC-------CceeeeecCCceEEEEec----cchHHHHH----hhcCceeEEE
Confidence 8753 5566778899999999999999 789999999999999982 33322222 1112234456
Q ss_pred ccCCCCCC-ccCCCCCceEEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe-cccccc
Q 000054 2429 ADAQTGSG-SKPGDQNGMLWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW-SKLHER 2498 (2548)
Q Consensus 2429 afSpdGk~-v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL-~~~Hs~ 2498 (2548)
+|.|+..- +.+..+.+.|-.+ -++|++-|.++.|+|..+++++||+|-..+|||.. |+.+.+- ..+|+-
T Consensus 152 ~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~I 230 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAI 230 (737)
T ss_pred EECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccce
Confidence 77777554 3333333322211 15899999999999999999999999999999975 4443322 111100
Q ss_pred --------ccccc---CcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEE
Q 000054 2499 --------HTFLQ---PSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKL 2538 (2548)
Q Consensus 2499 --------hsfl~---~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrI 2538 (2548)
..|+. .+++ .+.+--..|..++||+|| ++.|...|.+.+
T Consensus 231 TSva~npd~~~~v~S~nt~R-~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 231 TSVAFNPEKDYLLWSYNTAR-FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred eeeeeccccceeeeeeeeee-ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 00100 0011 111111447888999999 666666776544
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.4e-06 Score=101.69 Aligned_cols=267 Identities=12% Similarity=0.183 Sum_probs=172.0
Q ss_pred EEEEEEcCCCCEEEE-EECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCC-EEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLV-GSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGH-RFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LAS-GS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~-~LaSGS~DGtVrVWD 2299 (2548)
+.-+.|..+..+++. ...|+.|.+|++...+-...+.+ ..+.+.+++|+|||+ .|.+...|-.|.+|.
T Consensus 51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIde----------g~agls~~~WSPdgrhiL~tseF~lriTVWS 120 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDE----------GQAGLSSISWSPDGRHILLTSEFDLRITVWS 120 (447)
T ss_pred hhheeeeccceeeeeeeeccceEEEEEeecceeEEEecc----------CCCcceeeeECCCcceEeeeecceeEEEEEE
Confidence 455677777776664 58899999999998877777654 237899999999995 556677899999999
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEe---------------------------------ccCCCCeE
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAG---------------------------------HSSNGINV 2346 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG---------------------------------~SS~DGtV 2346 (2548)
+.+.+...+. +..|.....+|++||++.+.+. .+-++..+
T Consensus 121 L~t~~~~~~~-------~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~l 193 (447)
T KOG4497|consen 121 LNTQKGYLLP-------HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWL 193 (447)
T ss_pred eccceeEEec-------ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEE
Confidence 9877543321 4455556667888888776653 01123445
Q ss_pred EEEECCCCCCCcceeeecc-CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCc---------cc----------
Q 000054 2347 VVWDTLAPPTSSRASITCH-EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRY---------IA---------- 2406 (2548)
Q Consensus 2347 rIWDl~t~~~k~v~sl~gH-s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~---------l~---------- 2406 (2548)
.+||.-. + ...+.-| .-++..++|+|. +++|+.|+.|+.+|+.+--. +.
T Consensus 194 aVwd~~L---e-ykv~aYe~~lG~k~v~wsP~-------~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~ 262 (447)
T KOG4497|consen 194 AVWDNVL---E-YKVYAYERGLGLKFVEWSPC-------NQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLL 262 (447)
T ss_pred EEecchh---h-heeeeeeeccceeEEEeccc-------cceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhh
Confidence 6666422 1 1111122 357899999998 67999999999998876310 00
Q ss_pred ---cCc-------e----------------------------eeeec--CCCCCCCccccccccCCCCCCccCCCCC---
Q 000054 2407 ---TGK-------T----------------------------KKHKH--SDRGGSSINTCAHADAQTGSGSKPGDQN--- 2443 (2548)
Q Consensus 2407 ---TGk-------~----------------------------l~tl~--~~~~~s~~~~~~vafSpdGk~v~s~D~s--- 2443 (2548)
+-+ + +..++ .+.....+....++|++|..++++.+.+
T Consensus 263 ~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~Pn 342 (447)
T KOG4497|consen 263 EKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPN 342 (447)
T ss_pred hhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCc
Confidence 000 0 00000 0111112334556788888886666554
Q ss_pred -ceEEEccc-------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceee
Q 000054 2444 -GMLWYIPK-------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRA 2515 (2548)
Q Consensus 2444 -v~Iwdi~~-------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a 2515 (2548)
+-+||+.. ....+|....|+|....|+.+.....+.+|...-...+..- ..|.
T Consensus 343 alW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP-------------~~GF------ 403 (447)
T KOG4497|consen 343 ALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVP-------------KKGF------ 403 (447)
T ss_pred eEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecC-------------CCCc------
Confidence 36788532 24568899999998877777776777889987654444321 1332
Q ss_pred cEEEEEEcCCe--EEEEECCCc
Q 000054 2516 GVTDIQVVSRG--FLSCGGDGS 2535 (2548)
Q Consensus 2516 ~VtsLafSPdG--LaSGS~DGt 2535 (2548)
.|.++.|..+| ++-++.|.-
T Consensus 404 ~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 404 NIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred eeeeEEecCCCcEEEEEcCCce
Confidence 26778999888 777777753
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.9e-06 Score=99.55 Aligned_cols=180 Identities=14% Similarity=0.258 Sum_probs=129.2
Q ss_pred CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCC
Q 000054 2241 THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSH 2320 (2548)
Q Consensus 2241 GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH 2320 (2548)
+.|.|||=...+++.++.- ..+|.+|.+.++- +++. .++.|.||.....-+. .... .+. ..
T Consensus 75 NkviIWDD~k~~~i~el~f-----------~~~I~~V~l~r~r--iVvv-l~~~I~VytF~~n~k~-l~~~---et~-~N 135 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSF-----------NSEIKAVKLRRDR--IVVV-LENKIYVYTFPDNPKL-LHVI---ETR-SN 135 (346)
T ss_pred ceEEEEecccCcEEEEEEe-----------ccceeeEEEcCCe--EEEE-ecCeEEEEEcCCChhh-eeee---ecc-cC
Confidence 5799999666666666542 3789999998553 4443 4678999998743211 1111 111 11
Q ss_pred cccEEEEcCC--CCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCc-E
Q 000054 2321 AMDVSYITSS--GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGD-V 2397 (2548)
Q Consensus 2321 ~~~V~afSpd--GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGt-V 2397 (2548)
...++++.|. ..+||.-| -.-|.|+|-|+.......-..+.+|.+.|.|++.+-+ |.++||+|..|+ |
T Consensus 136 PkGlC~~~~~~~k~~LafPg--~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~-------Gt~vATaStkGTLI 206 (346)
T KOG2111|consen 136 PKGLCSLCPTSNKSLLAFPG--FKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQ-------GTLVATASTKGTLI 206 (346)
T ss_pred CCceEeecCCCCceEEEcCC--CccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCC-------ccEEEEeccCcEEE
Confidence 2235555553 34666655 3679999999975323245788899999999999887 889999999996 6
Q ss_pred EEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccC-CCCCEEEEEEeCCCCEEEEEeCCC
Q 000054 2398 GIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKA-HLGSVTRISTVPNTSLFLTGSKDG 2476 (2548)
Q Consensus 2398 rLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~g-H~~~VtsLafSPdG~~LaSGS~DG 2476 (2548)
|||| ..+|..+..++ .| ....|++++|+|++.+|+++|+.|
T Consensus 207 RIFd---t~~g~~l~E~R-----------------------------------RG~d~A~iy~iaFSp~~s~LavsSdKg 248 (346)
T KOG2111|consen 207 RIFD---TEDGTLLQELR-----------------------------------RGVDRADIYCIAFSPNSSWLAVSSDKG 248 (346)
T ss_pred EEEE---cCCCcEeeeee-----------------------------------cCCchheEEEEEeCCCccEEEEEcCCC
Confidence 9999 66788777762 22 245799999999999999999999
Q ss_pred cEEEEECCCC
Q 000054 2477 DVKLWDAKAA 2486 (2548)
Q Consensus 2477 tIrIWDl~Tg 2486 (2548)
+|+|+.++..
T Consensus 249 TlHiF~l~~~ 258 (346)
T KOG2111|consen 249 TLHIFSLRDT 258 (346)
T ss_pred eEEEEEeecC
Confidence 9999998753
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4e-07 Score=110.80 Aligned_cols=200 Identities=16% Similarity=0.112 Sum_probs=144.3
Q ss_pred CCEEEEEECCCeEEEEEcCCCc----eeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCC--CcEEEEEcCCC
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDK----ATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALD--GTVCTWQLEVG 2303 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~----~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~D--GtVrVWDl~tg 2303 (2548)
...|+++-.+|.+.+|....+. .+..+.. ...+..|.-++. ...+++|+.. ..+++||+++.
T Consensus 115 dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~-----------g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~ 183 (412)
T KOG3881|consen 115 DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLAT-----------GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQS 183 (412)
T ss_pred CCEEEEEecCCcEEEEeccCCccccccceeeec-----------CCceeeeccCCCCCceEecCchhcccceeeeecccc
Confidence 3468888999999999987432 1222211 145777777774 4456668888 89999999977
Q ss_pred cccccccCccceeccCCcccEE----EEcCC--CCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000054 2304 GRSNVRPMESCLCFSSHAMDVS----YITSS--GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2304 k~i~i~p~~s~~t~~gH~~~V~----afSpd--GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
+.+-.... .....-+-.-+|+ .|-+. ...||++. .-+.|++||++. ..+++..+..-..+++++...|+
T Consensus 184 ~qiw~aKN-vpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T---~~hqvR~YDt~~-qRRPV~~fd~~E~~is~~~l~p~ 258 (412)
T KOG3881|consen 184 KQIWSAKN-VPNDRLGLRVPVWITDIRFLEGSPNYKFATIT---RYHQVRLYDTRH-QRRPVAQFDFLENPISSTGLTPS 258 (412)
T ss_pred eeeeeccC-CCCccccceeeeeeccceecCCCCCceEEEEe---cceeEEEecCcc-cCcceeEeccccCcceeeeecCC
Confidence 43211000 0000011112232 14444 67888885 789999999985 46789999888999999999998
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCE
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSV 2457 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~V 2457 (2548)
++++++|...|.+..||+| .++.+... +.+-.+.|
T Consensus 259 -------gn~Iy~gn~~g~l~~FD~r---~~kl~g~~-----------------------------------~kg~tGsi 293 (412)
T KOG3881|consen 259 -------GNFIYTGNTKGQLAKFDLR---GGKLLGCG-----------------------------------LKGITGSI 293 (412)
T ss_pred -------CcEEEEecccchhheeccc---Cceeeccc-----------------------------------cCCccCCc
Confidence 8899999999999999966 34444332 26788999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 000054 2458 TRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYH 2491 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~t 2491 (2548)
+++..+|.+++++++|-|..|||+|+++.++++.
T Consensus 294 rsih~hp~~~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 294 RSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred ceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence 9999999999999999999999999999877653
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-07 Score=115.64 Aligned_cols=256 Identities=15% Similarity=0.150 Sum_probs=167.5
Q ss_pred CCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcC--CCCEEEEEeccCCC
Q 000054 2268 PYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS--SGSVIAAAGHSSNG 2343 (2548)
Q Consensus 2268 ~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp--dGslLATgG~SS~D 2343 (2548)
..|.+.|..|.|+..|..+++|+.|..|.+||+..++... ....+|...|.. |-| +.+.+++++ .|
T Consensus 139 ~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l-------~f~SGH~~NvfQaKFiP~s~d~ti~~~s---~d 208 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKL-------SFESGHCNNVFQAKFIPFSGDRTIVTSS---RD 208 (559)
T ss_pred cCCCCccceeeecccCceeeccCccceEEeehhhccCccc-------ccccccccchhhhhccCCCCCcCceecc---cc
Confidence 4467999999999999999999999999999998775321 125678776652 433 345677764 89
Q ss_pred CeEEEEECCCCCC-CcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCC
Q 000054 2344 INVVVWDTLAPPT-SSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSS 2422 (2548)
Q Consensus 2344 GtVrIWDl~t~~~-k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~ 2422 (2548)
|.|++=.+..... +....+..|.+.|.-++.-|.. ...+.++|.|+.|.-+|+|.-......... .......
T Consensus 209 gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~s------p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr-~~~~~~~ 281 (559)
T KOG1334|consen 209 GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDS------PKPFLSCGEDAVVFHIDLRQDVPAEKFVCR-EADEKER 281 (559)
T ss_pred CceeeeeeccccceecceecccccCccceeeecCCC------CCcccccccccceeeeeeccCCccceeeee-ccCCccc
Confidence 9999887754211 1245566899999999999985 678999999999999998752211111111 1111111
Q ss_pred ccccccccCCCCCC---ccCCCCCceEEEcccC--------------------CCCCEEEEEEeCCCCEEEEEeCCCcEE
Q 000054 2423 INTCAHADAQTGSG---SKPGDQNGMLWYIPKA--------------------HLGSVTRISTVPNTSLFLTGSKDGDVK 2479 (2548)
Q Consensus 2423 ~~~~~vafSpdGk~---v~s~D~sv~Iwdi~~g--------------------H~~~VtsLafSPdG~~LaSGS~DGtIr 2479 (2548)
.....++..|...+ +++.+.-.++|+.... ....|++++|+.++.-|.+.-.|-.|+
T Consensus 282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IY 361 (559)
T KOG1334|consen 282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIY 361 (559)
T ss_pred eeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceE
Confidence 23344555555443 7777777788874321 123689999998776666677788899
Q ss_pred EEECCC--CcEEEEecccccccccccCcccCCCCceeecEEEEE-EcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2480 LWDAKA--AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQ-VVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2480 IWDl~T--gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLa-fSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
++.-.- |...... ..+..+....++||.+.-. |-.+- |-|.. +++||+-|.|.||+-.++.
T Consensus 362 LF~~~~~~G~~p~~~---s~~~~~~k~vYKGHrN~~T--VKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e 427 (559)
T KOG1334|consen 362 LFNKSMGDGSEPDPS---SPREQYVKRVYKGHRNSRT--VKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE 427 (559)
T ss_pred EeccccccCCCCCCC---cchhhccchhhcccccccc--cceeeeccCccceEEecCccceEEEEecchhH
Confidence 995332 2111111 0011222233688876432 44444 45555 7799999999999987764
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-07 Score=112.59 Aligned_cols=222 Identities=11% Similarity=0.048 Sum_probs=141.7
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEE-EeCCCcEEEEEcCCC
Q 000054 2225 FSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFAS-AALDGTVCTWQLEVG 2303 (2548)
Q Consensus 2225 VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaS-GS~DGtVrVWDl~tg 2303 (2548)
.+|+|+|+|+|+.+.- .+.|-|..+-+....|.. .+.|.-+.|..|.-+++. ...|+.|.+|++...
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-----------ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp 81 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-----------LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP 81 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-----------HHHhhheeeeccceeeeeeeeccceEEEEEeecc
Confidence 3567999999998876 777888777665444433 256888899988766555 477889999999854
Q ss_pred cccccccCccceeccCCcccEE-EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCC
Q 000054 2304 GRSNVRPMESCLCFSSHAMDVS-YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSG 2382 (2548)
Q Consensus 2304 k~i~i~p~~s~~t~~gH~~~V~-afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~g 2382 (2548)
+- .-+.-.+..+-+. +|+|||+.|.... +.|-.|.+|.+.+. ....++--...+..++|+|+
T Consensus 82 ew-------~ckIdeg~agls~~~WSPdgrhiL~ts--eF~lriTVWSL~t~---~~~~~~~pK~~~kg~~f~~d----- 144 (447)
T KOG4497|consen 82 EW-------YCKIDEGQAGLSSISWSPDGRHILLTS--EFDLRITVWSLNTQ---KGYLLPHPKTNVKGYAFHPD----- 144 (447)
T ss_pred ee-------EEEeccCCCcceeeeECCCcceEeeee--cceeEEEEEEeccc---eeEEecccccCceeEEECCC-----
Confidence 31 1111223333232 5999997776654 48999999999762 22233333456788999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCc--eEEEcccCCC-CCEEE
Q 000054 2383 SVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNG--MLWYIPKAHL-GSVTR 2459 (2548)
Q Consensus 2383 s~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv--~Iwdi~~gH~-~~Vts 2459 (2548)
|++.+..+....-....+...+.-..++++ .......+.+-++|||..++..|+-. +++ --|. -.+..
T Consensus 145 --g~f~ai~sRrDCkdyv~i~~c~~W~ll~~f----~~dT~DltgieWsPdg~~laVwd~~Leykv~---aYe~~lG~k~ 215 (447)
T KOG4497|consen 145 --GQFCAILSRRDCKDYVQISSCKAWILLKEF----KLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY---AYERGLGLKF 215 (447)
T ss_pred --CceeeeeecccHHHHHHHHhhHHHHHHHhc----CCCcccccCceECCCCcEEEEecchhhheee---eeeeccceeE
Confidence 677776664321111111101111222222 22334556778999998755544422 211 1132 47899
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECC
Q 000054 2460 ISTVPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2460 LafSPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
++|+|.+++|+.|+.|+.+||-+--
T Consensus 216 v~wsP~~qflavGsyD~~lrvlnh~ 240 (447)
T KOG4497|consen 216 VEWSPCNQFLAVGSYDQMLRVLNHF 240 (447)
T ss_pred EEeccccceEEeeccchhhhhhcee
Confidence 9999999999999999999985543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-06 Score=112.36 Aligned_cols=164 Identities=18% Similarity=0.162 Sum_probs=105.3
Q ss_pred CCCeEEEEEccCCCEEEEEeCC---CcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEE
Q 000054 2271 LASISALQFDHYGHRFASAALD---GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVV 2347 (2548)
Q Consensus 2271 ~~~VtsVaFSPdG~~LaSGS~D---GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVr 2347 (2548)
...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...+. .+.++.. ...|+|||+.++... +.++...
T Consensus 195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~------~~~g~~~-~~~~SPDG~~la~~~--~~~g~~~ 265 (427)
T PRK02889 195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA------NFKGSNS-APAWSPDGRTLAVAL--SRDGNSQ 265 (427)
T ss_pred CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee------cCCCCcc-ceEECCCCCEEEEEE--ccCCCce
Confidence 3678899999999999887653 35999999887532211 1222221 235999999887543 3677777
Q ss_pred EEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe-CCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000054 2348 VWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGG-KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2348 IWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS-~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
||.+... ......+..+.+......|+|+ ++.|+..+ .+|...+|.+. ..+++..+..
T Consensus 266 Iy~~d~~-~~~~~~lt~~~~~~~~~~wSpD-------G~~l~f~s~~~g~~~Iy~~~-~~~g~~~~lt------------ 324 (427)
T PRK02889 266 IYTVNAD-GSGLRRLTQSSGIDTEPFFSPD-------GRSIYFTSDRGGAPQIYRMP-ASGGAAQRVT------------ 324 (427)
T ss_pred EEEEECC-CCCcEECCCCCCCCcCeEEcCC-------CCEEEEEecCCCCcEEEEEE-CCCCceEEEe------------
Confidence 7765432 2334555556666677889998 66666544 45777888743 2223221111
Q ss_pred ccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCC---cEEEEECCCCcEE
Q 000054 2427 AHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDG---DVKLWDAKAAQLV 2489 (2548)
Q Consensus 2427 ~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DG---tIrIWDl~Tgell 2489 (2548)
.+.......+|+|+|++++..+.++ .|.+||+.+++..
T Consensus 325 -------------------------~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 325 -------------------------FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT 365 (427)
T ss_pred -------------------------cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence 0111223568999999998877654 6999999988754
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.4e-06 Score=108.61 Aligned_cols=213 Identities=12% Similarity=0.088 Sum_probs=130.9
Q ss_pred CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC---CCcEEEEEcCCCcccccccCccceec
Q 000054 2241 THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL---DGTVCTWQLEVGGRSNVRPMESCLCF 2317 (2548)
Q Consensus 2241 GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~---DGtVrVWDl~tgk~i~i~p~~s~~t~ 2317 (2548)
..|.++|.+.... ..+.. |...+.+.+|+|||+.|+..+. +..|.+||+.++.... +
T Consensus 182 ~~l~~~d~dg~~~-~~lt~----------~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~---------l 241 (435)
T PRK05137 182 KRLAIMDQDGANV-RYLTD----------GSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL---------V 241 (435)
T ss_pred eEEEEECCCCCCc-EEEec----------CCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE---------e
Confidence 4788888754432 33321 3468999999999999988764 4689999998775322 1
Q ss_pred cCCcccEE--EEcCCCCEEEEEeccCCCCe--EEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe-
Q 000054 2318 SSHAMDVS--YITSSGSVIAAAGHSSNGIN--VVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGG- 2392 (2548)
Q Consensus 2318 ~gH~~~V~--afSpdGslLATgG~SS~DGt--VrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS- 2392 (2548)
..+...+. .|+|||+.++... +.++. |.+||+.. + ....+..+.+......|+|+ ++.|+..+
T Consensus 242 ~~~~g~~~~~~~SPDG~~la~~~--~~~g~~~Iy~~d~~~--~-~~~~Lt~~~~~~~~~~~spD-------G~~i~f~s~ 309 (435)
T PRK05137 242 GNFPGMTFAPRFSPDGRKVVMSL--SQGGNTDIYTMDLRS--G-TTTRLTDSPAIDTSPSYSPD-------GSQIVFESD 309 (435)
T ss_pred ecCCCcccCcEECCCCCEEEEEE--ecCCCceEEEEECCC--C-ceEEccCCCCccCceeEcCC-------CCEEEEEEC
Confidence 12222222 4899999876543 24554 77778764 2 33445556666778899998 66666655
Q ss_pred CCC--cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEE
Q 000054 2393 KGG--DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFL 2470 (2548)
Q Consensus 2393 ~DG--tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~La 2470 (2548)
.+| .|.++| ...+.. +.+ ..+.+.+....|+|+|+.|+
T Consensus 310 ~~g~~~Iy~~d---~~g~~~-~~l------------------------------------t~~~~~~~~~~~SpdG~~ia 349 (435)
T PRK05137 310 RSGSPQLYVMN---ADGSNP-RRI------------------------------------SFGGGRYSTPVWSPRGDLIA 349 (435)
T ss_pred CCCCCeEEEEE---CCCCCe-EEe------------------------------------ecCCCcccCeEECCCCCEEE
Confidence 344 566667 333332 222 11233455678999999998
Q ss_pred EEeCC---CcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEEC-C-----CcEEEE
Q 000054 2471 TGSKD---GDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGG-D-----GSVKLI 2539 (2548)
Q Consensus 2471 SGS~D---GtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~-D-----GtIrIW 2539 (2548)
..+.+ ..|.+||+.++.. ..+. .++ . +....|+||| |+..+. . ..+.+.
T Consensus 350 ~~~~~~~~~~i~~~d~~~~~~-~~lt-------------~~~--~----~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~ 409 (435)
T PRK05137 350 FTKQGGGQFSIGVMKPDGSGE-RILT-------------SGF--L----VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTV 409 (435)
T ss_pred EEEcCCCceEEEEEECCCCce-Eecc-------------CCC--C----CCCCeECCCCCEEEEEEccCCCCCcceEEEE
Confidence 77653 3688889865543 3231 111 1 2344899999 443332 2 257788
Q ss_pred ECCCCc
Q 000054 2540 QLEDYQ 2545 (2548)
Q Consensus 2540 DL~sg~ 2545 (2548)
+++++.
T Consensus 410 dl~g~~ 415 (435)
T PRK05137 410 DLTGRN 415 (435)
T ss_pred ECCCCc
Confidence 887653
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-06 Score=112.79 Aligned_cols=201 Identities=14% Similarity=0.167 Sum_probs=121.9
Q ss_pred EEEEEEcCCCCEEEEEEC---CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEE-EEeCCCcEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSS---NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALDGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~---DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~La-SGS~DGtVrV 2297 (2548)
+.+.+|+|||+.|+..+. ...|.+||+.+++.... .... +.+...+|+|||+.++ +.+.+|...+
T Consensus 198 v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~----------g~~~~~~~SPDG~~la~~~~~~g~~~I 266 (427)
T PRK02889 198 IISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFK----------GSNSAPAWSPDGRTLAVALSRDGNSQI 266 (427)
T ss_pred cccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCC----------CCccceEECCCCCEEEEEEccCCCceE
Confidence 467899999999987653 24699999998865432 2111 4466889999999887 5678888787
Q ss_pred EEcCCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEc
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafs 2375 (2548)
|.++..... .. .+..+.... ..|+|||+.++.++ ..++...||.+....+. ...+..+........|+
T Consensus 267 y~~d~~~~~-~~------~lt~~~~~~~~~~wSpDG~~l~f~s--~~~g~~~Iy~~~~~~g~-~~~lt~~g~~~~~~~~S 336 (427)
T PRK02889 267 YTVNADGSG-LR------RLTQSSGIDTEPFFSPDGRSIYFTS--DRGGAPQIYRMPASGGA-AQRVTFTGSYNTSPRIS 336 (427)
T ss_pred EEEECCCCC-cE------ECCCCCCCCcCeEEcCCCCEEEEEe--cCCCCcEEEEEECCCCc-eEEEecCCCCcCceEEC
Confidence 776432110 11 122222111 24999999888764 24566777766432222 22222223344567899
Q ss_pred cCCCCCCCCCCEEEEEeCCC---cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccC
Q 000054 2376 DNDLGSGSVSPLIVTGGKGG---DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKA 2452 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DG---tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~g 2452 (2548)
|+ ++.|+..+.++ .|.+||+ .+++..... .+
T Consensus 337 pD-------G~~Ia~~s~~~g~~~I~v~d~---~~g~~~~lt------------------------------------~~ 370 (427)
T PRK02889 337 PD-------GKLLAYISRVGGAFKLYVQDL---ATGQVTALT------------------------------------DT 370 (427)
T ss_pred CC-------CCEEEEEEccCCcEEEEEEEC---CCCCeEEcc------------------------------------CC
Confidence 98 77887766554 6999994 444432111 11
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCC---cEEEEECCCCcEEEEe
Q 000054 2453 HLGSVTRISTVPNTSLFLTGSKDG---DVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2453 H~~~VtsLafSPdG~~LaSGS~DG---tIrIWDl~Tgell~tL 2492 (2548)
.......|+|+|+.|+.++.++ .+.+.++ +|+....+
T Consensus 371 --~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l 410 (427)
T PRK02889 371 --TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRL 410 (427)
T ss_pred --CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEe
Confidence 1224578999999988887644 3455555 35444433
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-06 Score=102.21 Aligned_cols=160 Identities=13% Similarity=0.260 Sum_probs=107.1
Q ss_pred EEEEEEEcCCCCEEEEEEC----------CCeEEEEEcCC-CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE
Q 000054 2221 STRAFSSHPLRPFFLVGSS----------NTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA 2289 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LASGS~----------DGsVrLWDl~t-g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG 2289 (2548)
.-..+.|+|+|.+|+.-.. -|...||.++. +.....+.. ...+.|.+++|+|+|+.|++.
T Consensus 7 ~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l---------~~~~~I~~~~WsP~g~~favi 77 (194)
T PF08662_consen 7 DDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL---------KKEGPIHDVAWSPNGNEFAVI 77 (194)
T ss_pred ceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec---------cCCCceEEEEECcCCCEEEEE
Confidence 3478899999998885322 23455666532 223333221 112569999999999987655
Q ss_pred --eCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCC
Q 000054 2290 --ALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG 2367 (2548)
Q Consensus 2290 --S~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~ 2367 (2548)
..++.|.+||++ ++.+ ..+......-..|+|+|++++++|.....|.|.+||++. .+.+... +..
T Consensus 78 ~g~~~~~v~lyd~~-~~~i--------~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~--~~~i~~~--~~~ 144 (194)
T PF08662_consen 78 YGSMPAKVTLYDVK-GKKI--------FSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRK--KKKISTF--EHS 144 (194)
T ss_pred EccCCcccEEEcCc-ccEe--------EeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCC--CEEeecc--ccC
Confidence 456899999997 3211 113222222346999999999998544567899999974 4455444 334
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeC------CCcEEEEeCCccccCceeee
Q 000054 2368 GARSISVFDNDLGSGSVSPLIVTGGK------GGDVGIHDFRYIATGKTKKH 2413 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~------DGtVrLWDLR~l~TGk~l~t 2413 (2548)
.++.++|+|+ |++++++.. |+.++||++ .|+.+..
T Consensus 145 ~~t~~~WsPd-------Gr~~~ta~t~~r~~~dng~~Iw~~----~G~~l~~ 185 (194)
T PF08662_consen 145 DATDVEWSPD-------GRYLATATTSPRLRVDNGFKIWSF----QGRLLYK 185 (194)
T ss_pred cEEEEEEcCC-------CCEEEEEEeccceeccccEEEEEe----cCeEeEe
Confidence 5899999999 889888874 789999994 3555544
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.7e-06 Score=101.43 Aligned_cols=240 Identities=12% Similarity=0.133 Sum_probs=154.8
Q ss_pred cCCeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCCcE
Q 000054 2217 VENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTV 2295 (2548)
Q Consensus 2217 l~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DGtV 2295 (2548)
...+.++.++||+.-.-+|++..|-+|++||-.. .....++.. ....|++++|-|. +..|+.|+. +-|
T Consensus 96 ws~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~---------sQrnvtclawRPlsaselavgCr-~gI 164 (445)
T KOG2139|consen 96 WSEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSV---------SQRNVTCLAWRPLSASELAVGCR-AGI 164 (445)
T ss_pred hhhcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecch---------hhcceeEEEeccCCcceeeeeec-cee
Confidence 3445589999999877888999999999999765 444444321 2367999999995 556677665 557
Q ss_pred EEEEcCCCccccc--c--cC--ccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCC
Q 000054 2296 CTWQLEVGGRSNV--R--PM--ESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG 2367 (2548)
Q Consensus 2296 rVWDl~tgk~i~i--~--p~--~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~ 2367 (2548)
.+|.......... . .. .......+| ..|.+ +.+||..++++.. .|..|.|||..++...++. ..-.+
T Consensus 165 ciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~--gsssi~iWdpdtg~~~pL~--~~glg 239 (445)
T KOG2139|consen 165 CIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASF--GSSSIMIWDPDTGQKIPLI--PKGLG 239 (445)
T ss_pred EEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeeccc--CcceEEEEcCCCCCccccc--ccCCC
Confidence 8998753321110 0 00 011223455 45654 8999999999874 6899999999874333333 33467
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceE
Q 000054 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGML 2446 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~I 2446 (2548)
++.-+.|+|+ +.+|..+.-|+..++|...+.-+ +.+-. ..........++|+|+. +....+.-++
T Consensus 240 g~slLkwSPd-------gd~lfaAt~davfrlw~e~q~wt--~erw~-----lgsgrvqtacWspcGsfLLf~~sgsp~l 305 (445)
T KOG2139|consen 240 GFSLLKWSPD-------GDVLFAATCDAVFRLWQENQSWT--KERWI-----LGSGRVQTACWSPCGSFLLFACSGSPRL 305 (445)
T ss_pred ceeeEEEcCC-------CCEEEEecccceeeeehhcccce--eccee-----ccCCceeeeeecCCCCEEEEEEcCCceE
Confidence 8999999999 78999999999999996422111 11111 11113455667888776 1122222222
Q ss_pred EE------------------------c-----ccC---CCCCEEEEEEeCCCCEEEEEeCCC--------cEEEEECCCC
Q 000054 2447 WY------------------------I-----PKA---HLGSVTRISTVPNTSLFLTGSKDG--------DVKLWDAKAA 2486 (2548)
Q Consensus 2447 wd------------------------i-----~~g---H~~~VtsLafSPdG~~LaSGS~DG--------tIrIWDl~Tg 2486 (2548)
+. + ..+ -.+.+.+++|+|.|.+||+.-..+ .|.+||.+..
T Consensus 306 ysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 306 YSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred EEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence 21 1 011 245788999999999999875533 3667887643
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1e-06 Score=110.64 Aligned_cols=248 Identities=13% Similarity=0.112 Sum_probs=158.8
Q ss_pred EEEEEEcCCCCEEE-EEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRPFFL-VGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LA-SGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
+..+..+|||+|++ ||..-..|++||+.+-..... .+- -...|.-.-.+.|-..++--..|.+|-+..-
T Consensus 54 st~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFE--Rhl--------Dae~V~feiLsDD~SK~v~L~~DR~IefHak 123 (703)
T KOG2321|consen 54 STRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFE--RHL--------DAEVVDFEILSDDYSKSVFLQNDRTIEFHAK 123 (703)
T ss_pred cceeEecCCCcEEEEecccCCceEEEEcccceeeee--ecc--------cccceeEEEeccchhhheEeecCceeeehhh
Confidence 56788889999876 688889999999886543211 100 1144555555556566666677777755432
Q ss_pred CCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCC
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLG 2380 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg 2380 (2548)
- |....++ ++....++..-.|...++++| ....|+=.++.. +..+..+....+.++++..++-
T Consensus 124 ~-G~hy~~R-------IP~~GRDm~y~~~scDly~~g----sg~evYRlNLEq--GrfL~P~~~~~~~lN~v~in~~--- 186 (703)
T KOG2321|consen 124 Y-GRHYRTR-------IPKFGRDMKYHKPSCDLYLVG----SGSEVYRLNLEQ--GRFLNPFETDSGELNVVSINEE--- 186 (703)
T ss_pred c-Ceeeeee-------cCcCCccccccCCCccEEEee----cCcceEEEEccc--cccccccccccccceeeeecCc---
Confidence 1 2111111 222233344344566666665 345677777765 6777778777899999999988
Q ss_pred CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEE
Q 000054 2381 SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRI 2460 (2548)
Q Consensus 2381 ~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsL 2460 (2548)
..+|++|+.||.|..||.|. ...+..+.. ... +.-.| .......|+++
T Consensus 187 ----hgLla~Gt~~g~VEfwDpR~---ksrv~~l~~---~~~-----v~s~p-----------------g~~~~~svTal 234 (703)
T KOG2321|consen 187 ----HGLLACGTEDGVVEFWDPRD---KSRVGTLDA---ASS-----VNSHP-----------------GGDAAPSVTAL 234 (703)
T ss_pred ----cceEEecccCceEEEecchh---hhhheeeec---ccc-----cCCCc-----------------cccccCcceEE
Confidence 46999999999999999764 222222200 000 00000 01123469999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEEECCCcEE
Q 000054 2461 STVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVK 2537 (2548)
Q Consensus 2461 afSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIr 2537 (2548)
.|+.+|-.+++|..+|.|.|||+++.+++.. ..|++.+ .|..+.|.+.+ -+...+...++
T Consensus 235 ~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~---------------kdh~~e~--pi~~l~~~~~~~q~~v~S~Dk~~~k 297 (703)
T KOG2321|consen 235 KFRDDGLHVAVGTSTGSVLIYDLRASKPLLV---------------KDHGYEL--PIKKLDWQDTDQQNKVVSMDKRILK 297 (703)
T ss_pred EecCCceeEEeeccCCcEEEEEcccCCceee---------------cccCCcc--ceeeecccccCCCceEEecchHHhh
Confidence 9999999999999999999999999888752 3444433 45677887764 33334567899
Q ss_pred EEECCCCc
Q 000054 2538 LIQLEDYQ 2545 (2548)
Q Consensus 2538 IWDL~sg~ 2545 (2548)
|||-.+|.
T Consensus 298 iWd~~~Gk 305 (703)
T KOG2321|consen 298 IWDECTGK 305 (703)
T ss_pred hcccccCC
Confidence 99987764
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.1e-06 Score=109.97 Aligned_cols=217 Identities=14% Similarity=0.133 Sum_probs=131.8
Q ss_pred CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC---CcEEEEEcCCCcccccccCccceec
Q 000054 2241 THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD---GTVCTWQLEVGGRSNVRPMESCLCF 2317 (2548)
Q Consensus 2241 GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D---GtVrVWDl~tgk~i~i~p~~s~~t~ 2317 (2548)
..|.+||.+.... ..+.. +...+.+.+|+|||+.|+.++.+ ..|.+||+.++....+. .+
T Consensus 184 ~~l~i~D~~g~~~-~~lt~----------~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~------~~ 246 (433)
T PRK04922 184 YALQVADSDGYNP-QTILR----------SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA------SF 246 (433)
T ss_pred EEEEEECCCCCCc-eEeec----------CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec------cC
Confidence 4688899764432 23221 23678999999999999988744 46999999877532211 12
Q ss_pred cCCcccEEEEcCCCCEEEEEeccCCCC--eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe-CC
Q 000054 2318 SSHAMDVSYITSSGSVIAAAGHSSNGI--NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGG-KG 2394 (2548)
Q Consensus 2318 ~gH~~~V~afSpdGslLATgG~SS~DG--tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS-~D 2394 (2548)
.++.. ...|+|||+.++... +.++ .|.+||+.. + .+..+..+........|+|+ ++.|+.++ .+
T Consensus 247 ~g~~~-~~~~SpDG~~l~~~~--s~~g~~~Iy~~d~~~--g-~~~~lt~~~~~~~~~~~spD-------G~~l~f~sd~~ 313 (433)
T PRK04922 247 RGING-APSFSPDGRRLALTL--SRDGNPEIYVMDLGS--R-QLTRLTNHFGIDTEPTWAPD-------GKSIYFTSDRG 313 (433)
T ss_pred CCCcc-CceECCCCCEEEEEE--eCCCCceEEEEECCC--C-CeEECccCCCCccceEECCC-------CCEEEEEECCC
Confidence 22221 235899999876543 2344 699999875 2 23445556556678899998 66666555 45
Q ss_pred CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeC
Q 000054 2395 GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSK 2474 (2548)
Q Consensus 2395 GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~ 2474 (2548)
|...+|.+. +.+++..+.. .+.......+|+|+|++++..+.
T Consensus 314 g~~~iy~~d-l~~g~~~~lt-------------------------------------~~g~~~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 314 GRPQIYRVA-ASGGSAERLT-------------------------------------FQGNYNARASVSPDGKKIAMVHG 355 (433)
T ss_pred CCceEEEEE-CCCCCeEEee-------------------------------------cCCCCccCEEECCCCCEEEEEEC
Confidence 654444422 3333322111 11122346789999999987654
Q ss_pred CC---cEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEEC---CCcEEEEECCCCc
Q 000054 2475 DG---DVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGG---DGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2475 DG---tIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~---DGtIrIWDL~sg~ 2545 (2548)
++ .|.+||+.+++.. .+. .++ .. ....|+||| ++..+. .+.|.+++++++.
T Consensus 356 ~~~~~~I~v~d~~~g~~~-~Lt-------------~~~--~~----~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 356 SGGQYRIAVMDLSTGSVR-TLT-------------PGS--LD----ESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CCCceeEEEEECCCCCeE-ECC-------------CCC--CC----CCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 43 6999999888765 231 111 11 234799999 444433 3467888886653
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.4e-07 Score=105.75 Aligned_cols=233 Identities=18% Similarity=0.226 Sum_probs=149.5
Q ss_pred CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc---CCC-EEEEEeCCCcEEEEEcCCCccc-ccccCcc
Q 000054 2239 SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH---YGH-RFASAALDGTVCTWQLEVGGRS-NVRPMES 2313 (2548)
Q Consensus 2239 ~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP---dG~-~LaSGS~DGtVrVWDl~tgk~i-~i~p~~s 2313 (2548)
..|.+.+|++...+... +..++.. ....+..|.|.. +|. .++-+..+|.|.++........ ...+...
T Consensus 44 R~Gkl~Lys~~d~~~~~-l~~~q~~------dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~ 116 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSP-LDTLQCT------DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS 116 (339)
T ss_pred eccceEEEeecccccCc-cceeeee------cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch
Confidence 45778888887655443 1111111 126688888864 455 5677788899999987543211 1111110
Q ss_pred ceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeC
Q 000054 2314 CLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGK 2393 (2548)
Q Consensus 2314 ~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~ 2393 (2548)
+.+.....--..|++.+..++++. .+|.+.+-+.....-+.++..+.|.-.++...|+..+ .+++.+||.
T Consensus 117 -~ki~~~~~lslD~~~~~~~i~vs~---s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~------pnlvytGgD 186 (339)
T KOG0280|consen 117 -KKISVVEALSLDISTSGTKIFVSD---SRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKE------PNLVYTGGD 186 (339)
T ss_pred -hhhhheeeeEEEeeccCceEEEEc---CCCcEEEEecceeeeeecccccccceeeeeeecccCC------CceEEecCC
Confidence 001111111123778888888875 6788875554433345567889999999999998875 679999999
Q ss_pred CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeC-CCCEEEEE
Q 000054 2394 GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVP-NTSLFLTG 2472 (2548)
Q Consensus 2394 DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSP-dG~~LaSG 2472 (2548)
||.+..||+|. . ++. +|.-.+.|...|.++.-+| .+.+++||
T Consensus 187 D~~l~~~D~R~-p-~~~-----------------------------------i~~n~kvH~~GV~SI~ss~~~~~~I~TG 229 (339)
T KOG0280|consen 187 DGSLSCWDIRI-P-KTF-----------------------------------IWHNSKVHTSGVVSIYSSPPKPTYIATG 229 (339)
T ss_pred CceEEEEEecC-C-cce-----------------------------------eeecceeeecceEEEecCCCCCceEEEe
Confidence 99999999872 1 122 2332367999999999887 58899999
Q ss_pred eCCCcEEEEECCC-CcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCCC
Q 000054 2473 SKDGDVKLWDAKA-AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2473 S~DGtIrIWDl~T-gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~sg 2544 (2548)
+.|-.|++||.++ ++++..- .+..+|+.+.++|.- ++.+..-.-.+|-+.+++
T Consensus 230 sYDe~i~~~DtRnm~kPl~~~-------------------~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 230 SYDECIRVLDTRNMGKPLFKA-------------------KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred ccccceeeeehhcccCccccC-------------------ccccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 9999999999984 6665421 122568888888865 233333333455554443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.4e-06 Score=109.59 Aligned_cols=197 Identities=16% Similarity=0.135 Sum_probs=121.5
Q ss_pred EEEEEEcCCCCEEEEEEC---CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEE-EEeCCC--cE
Q 000054 2222 TRAFSSHPLRPFFLVGSS---NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALDG--TV 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~---DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~La-SGS~DG--tV 2295 (2548)
+...+|+|+|+.|+..+. +..|++||+.+++.... ... .+...+.+|+|+|+.++ +.+.+| .|
T Consensus 206 v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l-~~~----------~g~~~~~~~SpDG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV-ASF----------RGINGAPSFSPDGRRLALTLSRDGNPEI 274 (433)
T ss_pred cccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe-ccC----------CCCccCceECCCCCEEEEEEeCCCCceE
Confidence 577889999999997653 34699999988765322 111 13345789999999775 456666 58
Q ss_pred EEEEcCCCcccccccCccceeccCCccc--EEEEcCCCCEEEEEeccCCCCe--EEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMD--VSYITSSGSVIAAAGHSSNGIN--VVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~--V~afSpdGslLATgG~SS~DGt--VrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
.+||+.+++... +..+... -..|+|||+.++.+. ..++. |.++|+.. ++ ...+..+......
T Consensus 275 y~~d~~~g~~~~---------lt~~~~~~~~~~~spDG~~l~f~s--d~~g~~~iy~~dl~~--g~-~~~lt~~g~~~~~ 340 (433)
T PRK04922 275 YVMDLGSRQLTR---------LTNHFGIDTEPTWAPDGKSIYFTS--DRGGRPQIYRVAASG--GS-AERLTFQGNYNAR 340 (433)
T ss_pred EEEECCCCCeEE---------CccCCCCccceEECCCCCEEEEEE--CCCCCceEEEEECCC--CC-eEEeecCCCCccC
Confidence 889998765322 1222211 125899999888764 23444 55556543 22 2233333344557
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCC---cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEE
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGG---DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWY 2448 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DG---tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwd 2448 (2548)
.+|+|+ ++.++..+.++ .|.+||+ .+++.. .+
T Consensus 341 ~~~SpD-------G~~Ia~~~~~~~~~~I~v~d~---~~g~~~-~L---------------------------------- 375 (433)
T PRK04922 341 ASVSPD-------GKKIAMVHGSGGQYRIAVMDL---STGSVR-TL---------------------------------- 375 (433)
T ss_pred EEECCC-------CCEEEEEECCCCceeEEEEEC---CCCCeE-EC----------------------------------
Confidence 899998 67777654433 6899994 444432 22
Q ss_pred cccCCCCCEEEEEEeCCCCEEEEEeCC---CcEEEEECCCCcEEEEe
Q 000054 2449 IPKAHLGSVTRISTVPNTSLFLTGSKD---GDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2449 i~~gH~~~VtsLafSPdG~~LaSGS~D---GtIrIWDl~Tgell~tL 2492 (2548)
. +........|+|+|++++..+.+ +.|.++|+. |.....+
T Consensus 376 --t-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l 418 (433)
T PRK04922 376 --T-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRL 418 (433)
T ss_pred --C-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEc
Confidence 0 11122346899999988777653 367788875 4444433
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.2e-07 Score=112.00 Aligned_cols=150 Identities=17% Similarity=0.253 Sum_probs=98.1
Q ss_pred ccCCCCccCCeEEEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEE--ccCCCEE
Q 000054 2210 YVDPPATVENISTRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQF--DHYGHRF 2286 (2548)
Q Consensus 2210 ~v~p~~tl~gV~V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaF--SPdG~~L 2286 (2548)
.+...+.+..-.+.|+.|-|.++ .++++-.+|.+++||.... ...+.-.| .+++..+
T Consensus 210 lfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~--------------------~~~t~p~~~~~k~~~~f 269 (636)
T KOG2394|consen 210 LFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV--------------------CGATAPSYQALKDGDQF 269 (636)
T ss_pred hhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc--------------------ccCCCCcccccCCCCee
Confidence 33444455555689999999655 5556788999999986210 11111112 2244444
Q ss_pred EEEeCC-----CcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCccee
Q 000054 2287 ASAALD-----GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRAS 2361 (2548)
Q Consensus 2287 aSGS~D-----GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~s 2361 (2548)
.....- .-|.-|.+. .+.... .+|+|||+++|+.+ .||.++|+|..+ .+.+..
T Consensus 270 ~i~t~ksk~~rNPv~~w~~~----------------~g~in~-f~FS~DG~~LA~VS---qDGfLRvF~fdt--~eLlg~ 327 (636)
T KOG2394|consen 270 AILTSKSKKTRNPVARWHIG----------------EGSINE-FAFSPDGKYLATVS---QDGFLRIFDFDT--QELLGV 327 (636)
T ss_pred EEeeeeccccCCccceeEec----------------cccccc-eeEcCCCceEEEEe---cCceEEEeeccH--HHHHHH
Confidence 332111 112222222 111111 25889999999996 999999999976 455666
Q ss_pred eeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCcee
Q 000054 2362 ITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTK 2411 (2548)
Q Consensus 2362 l~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l 2411 (2548)
++..-++..|++|+|+ +++|++||.|.-|.||.+ ...+.+
T Consensus 328 mkSYFGGLLCvcWSPD-------GKyIvtGGEDDLVtVwSf---~erRVV 367 (636)
T KOG2394|consen 328 MKSYFGGLLCVCWSPD-------GKYIVTGGEDDLVTVWSF---EERRVV 367 (636)
T ss_pred HHhhccceEEEEEcCC-------ccEEEecCCcceEEEEEe---ccceEE
Confidence 7677789999999999 899999999999999994 444444
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.4e-05 Score=101.75 Aligned_cols=280 Identities=13% Similarity=0.105 Sum_probs=153.1
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe-CCCcEEEEEcC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LDGTVCTWQLE 2301 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS-~DGtVrVWDl~ 2301 (2548)
..+.|+|||+++.+.+.||.|.++|+.+++.+.+++. .....++++++||++++++. .++.+.++|.+
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-----------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~ 108 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-----------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAE 108 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETT
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-----------CCCcceEEEcCCCCEEEEEecCCCceeEeccc
Confidence 4567889999999999999999999999999988864 14578899999999998775 67999999999
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
+.+.+...+.... .......++.+ .++....++.+- -+.+.|.+-|.... ..................|.|+
T Consensus 109 tle~v~~I~~~~~-~~~~~~~Rv~aIv~s~~~~~fVv~l--kd~~~I~vVdy~d~-~~~~~~~i~~g~~~~D~~~dpd-- 182 (369)
T PF02239_consen 109 TLEPVKTIPTGGM-PVDGPESRVAAIVASPGRPEFVVNL--KDTGEIWVVDYSDP-KNLKVTTIKVGRFPHDGGFDPD-- 182 (369)
T ss_dssp T--EEEEEE--EE--TTTS---EEEEEE-SSSSEEEEEE--TTTTEEEEEETTTS-SCEEEEEEE--TTEEEEEE-TT--
T ss_pred cccceeecccccc-cccccCCCceeEEecCCCCEEEEEE--ccCCeEEEEEeccc-cccceeeecccccccccccCcc--
Confidence 8765443221110 01113334443 356666444432 14577777787653 2222222233456778888988
Q ss_pred CCCCCCCEEEE-EeCCCcEEEEeCCccccCceeeeecCCCCCCC------ccc-cccccCCC--CCC--ccCCCCCc---
Q 000054 2380 GSGSVSPLIVT-GGKGGDVGIHDFRYIATGKTKKHKHSDRGGSS------INT-CAHADAQT--GSG--SKPGDQNG--- 2444 (2548)
Q Consensus 2380 g~gs~g~lLVS-GS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~------~~~-~~vafSpd--Gk~--v~s~D~sv--- 2444 (2548)
+++++. ...++.|-++| .++++.+..+........ +.. ....|... +.. ...+...+
T Consensus 183 -----gry~~va~~~sn~i~viD---~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~ 254 (369)
T PF02239_consen 183 -----GRYFLVAANGSNKIAVID---TKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVH 254 (369)
T ss_dssp -----SSEEEEEEGGGTEEEEEE---TTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-S
T ss_pred -----cceeeecccccceeEEEe---eccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccc
Confidence 666555 45677999999 445555443311100000 000 00011111 111 01111112
Q ss_pred -----eEEEcccCCCCCEEEEEEeCCCCEEEEE----eCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceee
Q 000054 2445 -----MLWYIPKAHLGSVTRISTVPNTSLFLTG----SKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRA 2515 (2548)
Q Consensus 2445 -----~Iwdi~~gH~~~VtsLafSPdG~~LaSG----S~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a 2515 (2548)
++........++ .-+..+|+++++.+. ...++|.++|.++.+.+.++. .+-+ .
T Consensus 255 d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~-------------~~~~----~ 316 (369)
T PF02239_consen 255 DDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT-------------PGPG----K 316 (369)
T ss_dssp TTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH-------------HHHT-----
T ss_pred hhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEe-------------ccCC----C
Confidence 222222333444 678889999999988 445899999999998887762 0111 1
Q ss_pred cEEEEEEcCCe---EEEEECCC-cEEEEECCCCc
Q 000054 2516 GVTDIQVVSRG---FLSCGGDG-SVKLIQLEDYQ 2545 (2548)
Q Consensus 2516 ~VtsLafSPdG---LaSGS~DG-tIrIWDL~sg~ 2545 (2548)
.+..+.|+++| .+|.-.++ .|.+||..+..
T Consensus 317 ~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~ 350 (369)
T PF02239_consen 317 RVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLK 350 (369)
T ss_dssp -EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTE
T ss_pred cEeccEECCCCCEEEEEEecCCCEEEEEECCCcE
Confidence 15677999999 45555444 89999988753
|
... |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1e-05 Score=105.33 Aligned_cols=196 Identities=15% Similarity=0.104 Sum_probs=122.9
Q ss_pred EEEEEEcCCCCEEEEEE---CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEE-EEeCCCc--E
Q 000054 2222 TRAFSSHPLRPFFLVGS---SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALDGT--V 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS---~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~La-SGS~DGt--V 2295 (2548)
+...+|+|||+.|+..+ .+..|.+||+.+++... +.. +.+.+...+|+|||+.++ +.+.+|. |
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~----------~~g~~~~~~~SPDG~~la~~~~~~g~~~I 272 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGN----------FPGMTFAPRFSPDGRKVVMSLSQGGNTDI 272 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eec----------CCCcccCcEECCCCCEEEEEEecCCCceE
Confidence 68899999999988764 35689999998876532 221 225677889999999875 5566665 6
Q ss_pred EEEEcCCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
.+||++++.... +..+.... ..|+|||+.++.+.....+..|.++|+.. .....+..+.+.+....
T Consensus 273 y~~d~~~~~~~~---------Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g---~~~~~lt~~~~~~~~~~ 340 (435)
T PRK05137 273 YTMDLRSGTTTR---------LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG---SNPRRISFGGGRYSTPV 340 (435)
T ss_pred EEEECCCCceEE---------ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC---CCeEEeecCCCcccCeE
Confidence 666877664321 22222212 35899999888764211123677788754 23344444455677788
Q ss_pred EccCCCCCCCCCCEEEEEeCC---CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcc
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKG---GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP 2450 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~D---GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~ 2450 (2548)
|+|+ ++.|+..+.+ ..|.+||+ ..+. .+.+
T Consensus 341 ~Spd-------G~~ia~~~~~~~~~~i~~~d~---~~~~-~~~l------------------------------------ 373 (435)
T PRK05137 341 WSPR-------GDLIAFTKQGGGQFSIGVMKP---DGSG-ERIL------------------------------------ 373 (435)
T ss_pred ECCC-------CCEEEEEEcCCCceEEEEEEC---CCCc-eEec------------------------------------
Confidence 9998 6777765543 25777773 2222 1221
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCC------CcEEEEECCCCcE
Q 000054 2451 KAHLGSVTRISTVPNTSLFLTGSKD------GDVKLWDAKAAQL 2488 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~D------GtIrIWDl~Tgel 2488 (2548)
. ....+....|+|||+.|+..+.+ ..+.+.|+..+..
T Consensus 374 t-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 374 T-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred c-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 0 11134567899999988766543 2577888865544
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-06 Score=116.46 Aligned_cols=190 Identities=15% Similarity=0.194 Sum_probs=142.3
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccccc
Q 000054 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNV 2308 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i 2308 (2548)
-+...++.+..++.+.+||...+.....+..-. ..-.....-+.++++.-++++|+.-+.|.+|+.....
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~e------r~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn---- 166 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDE------RCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN---- 166 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCceehhcCCCc------eEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC----
Confidence 345678888999999999988776554432100 0001123334456677789999999999999987221
Q ss_pred ccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCC
Q 000054 2309 RPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSP 2386 (2548)
Q Consensus 2309 ~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~ 2386 (2548)
.+. .+.+|.+.+.. ++.||+++++++ +|+++++|++.+.. ......-+|+..|+.+.++|.
T Consensus 167 ~p~----~l~GHeG~iF~i~~s~dg~~i~s~S---dDRsiRlW~i~s~~-~~~~~~fgHsaRvw~~~~~~n--------- 229 (967)
T KOG0974|consen 167 KPI----RLKGHEGSIFSIVTSLDGRYIASVS---DDRSIRLWPIDSRE-VLGCTGFGHSARVWACCFLPN--------- 229 (967)
T ss_pred Ccc----eecccCCceEEEEEccCCcEEEEEe---cCcceeeeeccccc-ccCcccccccceeEEEEeccc---------
Confidence 111 37899999886 677999999994 99999999998732 222355589999999999987
Q ss_pred EEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC-CCEEEEEEeCC
Q 000054 2387 LIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL-GSVTRISTVPN 2465 (2548)
Q Consensus 2387 lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~-~~VtsLafSPd 2465 (2548)
.++|++.|-+.++|+.. +.. |..+.+|. ..|..++.+++
T Consensus 230 ~i~t~gedctcrvW~~~----~~~------------------------------------l~~y~~h~g~~iw~~~~~~~ 269 (967)
T KOG0974|consen 230 RIITVGEDCTCRVWGVN----GTQ------------------------------------LEVYDEHSGKGIWKIAVPIG 269 (967)
T ss_pred eeEEeccceEEEEEecc----cce------------------------------------ehhhhhhhhcceeEEEEcCC
Confidence 99999999999999732 222 22235665 47999999999
Q ss_pred CCEEEEEeCCCcEEEEECCC
Q 000054 2466 TSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2466 G~~LaSGS~DGtIrIWDl~T 2485 (2548)
....+|++.||.+++||+..
T Consensus 270 ~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 270 VIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ceEEEeeccCcchhhhhhhc
Confidence 99999999999999999864
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.9e-05 Score=99.80 Aligned_cols=181 Identities=15% Similarity=0.186 Sum_probs=111.3
Q ss_pred CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC---CcEEEEEcCCCcccccccCcccee
Q 000054 2240 NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD---GTVCTWQLEVGGRSNVRPMESCLC 2316 (2548)
Q Consensus 2240 DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D---GtVrVWDl~tgk~i~i~p~~s~~t 2316 (2548)
...|.++|...+.. ..+.. +...+.+.+|+|+|++++.+..+ ..|.+||+.+++..... .
T Consensus 169 ~~~l~~~d~~g~~~-~~l~~----------~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~------~ 231 (417)
T TIGR02800 169 RYELQVADYDGANP-QTITR----------SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA------S 231 (417)
T ss_pred cceEEEEcCCCCCC-EEeec----------CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee------c
Confidence 34577888754332 22211 22568889999999999987654 47999999877532211 1
Q ss_pred ccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe-CCC
Q 000054 2317 FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGG-KGG 2395 (2548)
Q Consensus 2317 ~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS-~DG 2395 (2548)
+.+.... ..|+|+|+.|+.......+..|.+||+.++ ....+..+........|+|+ ++.|+..+ .+|
T Consensus 232 ~~~~~~~-~~~spDg~~l~~~~~~~~~~~i~~~d~~~~---~~~~l~~~~~~~~~~~~s~d-------g~~l~~~s~~~g 300 (417)
T TIGR02800 232 FPGMNGA-PAFSPDGSKLAVSLSKDGNPDIYVMDLDGK---QLTRLTNGPGIDTEPSWSPD-------GKSIAFTSDRGG 300 (417)
T ss_pred CCCCccc-eEECCCCCEEEEEECCCCCccEEEEECCCC---CEEECCCCCCCCCCEEECCC-------CCEEEEEECCCC
Confidence 2222211 358999997775431112345888888652 23344445555567788887 66666554 344
Q ss_pred --cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEe
Q 000054 2396 --DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGS 2473 (2548)
Q Consensus 2396 --tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS 2473 (2548)
.|.++|+ .+++.. .+ ..+...+....|+|+|++++.++
T Consensus 301 ~~~iy~~d~---~~~~~~-~l------------------------------------~~~~~~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 301 SPQIYMMDA---DGGEVR-RL------------------------------------TFRGGYNASPSWSPDGDLIAFVH 340 (417)
T ss_pred CceEEEEEC---CCCCEE-Ee------------------------------------ecCCCCccCeEECCCCCEEEEEE
Confidence 4666663 333321 11 11234456788999999999888
Q ss_pred CCC---cEEEEECCCCcE
Q 000054 2474 KDG---DVKLWDAKAAQL 2488 (2548)
Q Consensus 2474 ~DG---tIrIWDl~Tgel 2488 (2548)
.++ .|.+||+.++..
T Consensus 341 ~~~~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 341 REGGGFNIAVMDLDGGGE 358 (417)
T ss_pred ccCCceEEEEEeCCCCCe
Confidence 876 889999987654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.2e-07 Score=115.01 Aligned_cols=151 Identities=23% Similarity=0.421 Sum_probs=106.7
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCc--eeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEEcCCCcc
Q 000054 2229 PLRPFFLVGSSNTHIYLWEFGKDK--ATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCTWQLEVGGR 2305 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~--~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DGtVrVWDl~tgk~ 2305 (2548)
|..++-++........+|++.... .+.-+ + .+|..+|+++.|+|+ ...+++++.|-.|..||+++..
T Consensus 79 ~a~~~wiVsts~qkaiiwnlA~ss~~aIef~--l-------hghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~- 148 (1081)
T KOG0309|consen 79 PAKPYWIVSTSNQKAIIWNLAKSSSNAIEFV--L-------HGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH- 148 (1081)
T ss_pred CCCceeEEecCcchhhhhhhhcCCccceEEE--E-------ecCccceeccccCCCCCcceeeccccccceeeeccCCC-
Confidence 344455554445556688887432 22221 1 236689999999995 5688999999999999998664
Q ss_pred cccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCC
Q 000054 2306 SNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVS 2385 (2548)
Q Consensus 2306 i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g 2385 (2548)
.|+............|.+--.+++.+|+. ..+.|.+||.+.+ +.++..+++|...|+++.|+... .
T Consensus 149 ---~p~ys~~~w~s~asqVkwnyk~p~vlass----hg~~i~vwd~r~g-s~pl~s~K~~vs~vn~~~fnr~~------~ 214 (1081)
T KOG0309|consen 149 ---RPFYSTSSWRSAASQVKWNYKDPNVLASS----HGNDIFVWDLRKG-STPLCSLKGHVSSVNSIDFNRFK------Y 214 (1081)
T ss_pred ---cceeeeecccccCceeeecccCcchhhhc----cCCceEEEeccCC-CcceEEecccceeeehHHHhhhh------h
Confidence 33322222333333444323466777774 7889999999974 67889999999999999988763 5
Q ss_pred CEEEEEeCCCcEEEEeCC
Q 000054 2386 PLIVTGGKGGDVGIHDFR 2403 (2548)
Q Consensus 2386 ~lLVSGS~DGtVrLWDLR 2403 (2548)
..+.+++.||+|+.||..
T Consensus 215 s~~~s~~~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 215 SEIMSSSNDGTVKFWDYS 232 (1081)
T ss_pred hhhcccCCCCceeeeccc
Confidence 588999999999999954
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=6.3e-06 Score=105.06 Aligned_cols=212 Identities=14% Similarity=0.184 Sum_probs=140.2
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcc-cc
Q 000054 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGR-SN 2307 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~-i~ 2307 (2548)
|.+.|+|....||.+++||..+++....|.- ...-.+..++..| .+..+.. .+
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p-------~~~~s~t~~~~~w-------------------~L~~~~s~~k 56 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAP-------IASLSGTCTYTKW-------------------GLSADYSPMK 56 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeecc-------chhccCcceeEEE-------------------EEEeccchHH
Confidence 4567899999999999999999887766632 1111233444444 3221110 00
Q ss_pred cccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee--ccCCCeEEEEEccCCCCCCCCC
Q 000054 2308 VRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT--CHEGGARSISVFDNDLGSGSVS 2385 (2548)
Q Consensus 2308 i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~--gHs~~VtSLafsP~dlg~gs~g 2385 (2548)
.. +.. ...--+.+...++-|. ..|.|.++++.. ++....+. +|.+.|+++.++.+ -
T Consensus 57 ~~------~~~----~~~~~s~~t~~lvlgt---~~g~v~~ys~~~--g~it~~~st~~h~~~v~~~~~~~~-------~ 114 (541)
T KOG4547|consen 57 WL------SLE----KAKKASLDTSMLVLGT---PQGSVLLYSVAG--GEITAKLSTDKHYGNVNEILDAQR-------L 114 (541)
T ss_pred HH------hHH----HHhhccCCceEEEeec---CCccEEEEEecC--CeEEEEEecCCCCCcceeeecccc-------c
Confidence 00 000 0001123444556553 789999999875 44444443 79999999998776 4
Q ss_pred CEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCC
Q 000054 2386 PLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPN 2465 (2548)
Q Consensus 2386 ~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPd 2465 (2548)
..|.|++.|+.+..|+ ...++.++.. .+....+.+++.+||
T Consensus 115 ~ciyS~~ad~~v~~~~---~~~~~~~~~~------------------------------------~~~~~~~~sl~is~D 155 (541)
T KOG4547|consen 115 GCIYSVGADLKVVYIL---EKEKVIIRIW------------------------------------KEQKPLVSSLCISPD 155 (541)
T ss_pred CceEecCCceeEEEEe---cccceeeeee------------------------------------ccCCCccceEEEcCC
Confidence 5799999999999999 4444444333 556677889999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCC-e---EEEEECCCcEEEEEC
Q 000054 2466 TSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSR-G---FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2466 G~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPd-G---LaSGS~DGtIrIWDL 2541 (2548)
|..+++|+ +.|++||+++++.+.+| .||.+.|++.-....++.. | |.+...+.-|.+|-+
T Consensus 156 ~~~l~~as--~~ik~~~~~~kevv~~f--------------tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 156 GKILLTAS--RQIKVLDIETKEVVITF--------------TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred CCEEEecc--ceEEEEEccCceEEEEe--------------cCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 99999986 68999999999999877 7999877554221122222 3 446667777888887
Q ss_pred CC
Q 000054 2542 ED 2543 (2548)
Q Consensus 2542 ~s 2543 (2548)
+.
T Consensus 220 ~~ 221 (541)
T KOG4547|consen 220 EK 221 (541)
T ss_pred Ec
Confidence 64
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1e-05 Score=95.98 Aligned_cols=230 Identities=16% Similarity=0.191 Sum_probs=144.6
Q ss_pred EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCc
Q 000054 2233 FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPME 2312 (2548)
Q Consensus 2233 ~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~ 2312 (2548)
.++-+..+|.|.++..........++.+....+. .....++.|++.+..++++..+|.+.+-+..... .+
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~----~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~------le 156 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKIS----VVEALSLDISTSGTKIFVSDSRGSISGVYETEMV------LE 156 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhh----heeeeEEEeeccCceEEEEcCCCcEEEEecceee------ee
Confidence 4566788899999998766666666554432211 0134678899999999999999999855543321 12
Q ss_pred cceeccCCcccEE--EEc-CCCCEEEEEeccCCCCeEEEEECCCCCCCc-ceeeeccCCCeEEEEEccCCCCCCCCCCEE
Q 000054 2313 SCLCFSSHAMDVS--YIT-SSGSVIAAAGHSSNGINVVVWDTLAPPTSS-RASITCHEGGARSISVFDNDLGSGSVSPLI 2388 (2548)
Q Consensus 2313 s~~t~~gH~~~V~--afS-pdGslLATgG~SS~DGtVrIWDl~t~~~k~-v~sl~gHs~~VtSLafsP~dlg~gs~g~lL 2388 (2548)
..+..+.|...++ .|+ .+.+++.+|| +|+.+..||++.+. +. .+..+.|..+|.+|.-+|.. +.++
T Consensus 157 ~vq~wk~He~E~Wta~f~~~~pnlvytGg---DD~~l~~~D~R~p~-~~i~~n~kvH~~GV~SI~ss~~~------~~~I 226 (339)
T KOG0280|consen 157 KVQTWKVHEFEAWTAKFSDKEPNLVYTGG---DDGSLSCWDIRIPK-TFIWHNSKVHTSGVVSIYSSPPK------PTYI 226 (339)
T ss_pred ecccccccceeeeeeecccCCCceEEecC---CCceEEEEEecCCc-ceeeecceeeecceEEEecCCCC------CceE
Confidence 2345778877665 244 3447888886 99999999999653 44 34477899999999988875 8899
Q ss_pred EEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccC---------CCCCC-ccCCCCCce---EEEcccCCCC
Q 000054 2389 VTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADA---------QTGSG-SKPGDQNGM---LWYIPKAHLG 2455 (2548)
Q Consensus 2389 VSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafS---------pdGk~-v~s~D~sv~---Iwdi~~gH~~ 2455 (2548)
+||+.|-.|++||.|++. +.+..- ..+.....+....+. -+|.. +...++... ...+.+.|.+
T Consensus 227 ~TGsYDe~i~~~DtRnm~--kPl~~~--~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdS 302 (339)
T KOG0280|consen 227 ATGSYDECIRVLDTRNMG--KPLFKA--KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDS 302 (339)
T ss_pred EEeccccceeeeehhccc--CccccC--ccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccc
Confidence 999999999999998532 222111 001111111111110 11111 112222222 3445567888
Q ss_pred CEEEEEEeCCCCEEEEEeC-CCcEE-EEECCCC
Q 000054 2456 SVTRISTVPNTSLFLTGSK-DGDVK-LWDAKAA 2486 (2548)
Q Consensus 2456 ~VtsLafSPdG~~LaSGS~-DGtIr-IWDl~Tg 2486 (2548)
-++.-.|+....+|+|++. |..++ +|-.-++
T Consensus 303 l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 303 LCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred eeeccccccccceeeeeeccccceeeeeeeccC
Confidence 8888888666677888763 66644 6654443
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.2e-05 Score=96.29 Aligned_cols=273 Identities=14% Similarity=0.114 Sum_probs=163.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-----eCCC---
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-----ALDG--- 2293 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-----S~DG--- 2293 (2548)
++.++++++|+++|.+ .+..|+|++..++..+.+... ..++++.|+|.|++|.|= ..|+
T Consensus 37 ~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~------------~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~ 103 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVEL------------KKTYDLLFSPKGNYLLTWEPWAIYGPKNAS 103 (566)
T ss_pred ceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEecc------------ceeeeeeecccccccccccccccccCCCCC
Confidence 5677788999888765 456799999998864444322 368999999999988652 2233
Q ss_pred --cEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2294 --TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2294 --tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
.+++|+++++...... ......+.+..|+.|..+.+-- ..+.|++||+... ....+. -|..+|+.
T Consensus 104 ~pn~~v~~vet~~~~s~~------q~k~Q~~W~~qfs~dEsl~arl----v~nev~f~~~~~f-~~~~~k--l~~~~i~~ 170 (566)
T KOG2315|consen 104 NPNVLVYNVETGVQRSQI------QKKMQNGWVPQFSIDESLAARL----VSNEVQFYDLGSF-KTIQHK--LSVSGITM 170 (566)
T ss_pred CCceeeeeeccceehhhe------ehhhhcCcccccccchhhhhhh----hcceEEEEecCCc-cceeee--eeccceee
Confidence 5679999885321110 0112222344578787766653 4578999998651 222233 36778888
Q ss_pred EEEccCCCCCCCCCCEEEE-----EeCCCcEEEEeCCcc----------------------ccCceeeeecC--------
Q 000054 2372 ISVFDNDLGSGSVSPLIVT-----GGKGGDVGIHDFRYI----------------------ATGKTKKHKHS-------- 2416 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVS-----GS~DGtVrLWDLR~l----------------------~TGk~l~tl~~-------- 2416 (2548)
+.++|.. ....+++ +|.-+.|+||-.... ..|..+..+..
T Consensus 171 f~lSpgp-----~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~ 245 (566)
T KOG2315|consen 171 LSLSPGP-----EPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNA 245 (566)
T ss_pred EEecCCC-----CCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCc
Confidence 8888762 1333332 344556666664310 00000100000
Q ss_pred -------------C------CCCCCccccccccCCCCCC----ccCCCCCceEEEc-----ccCCCCCEEEEEEeCCCCE
Q 000054 2417 -------------D------RGGSSINTCAHADAQTGSG----SKPGDQNGMLWYI-----PKAHLGSVTRISTVPNTSL 2468 (2548)
Q Consensus 2417 -------------~------~~~s~~~~~~vafSpdGk~----v~s~D~sv~Iwdi-----~~gH~~~VtsLafSPdG~~ 2468 (2548)
. ..........+.|+++|+- .+..-..+.|++. +.--+++=.++-|+|.|++
T Consensus 246 SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~i 325 (566)
T KOG2315|consen 246 SYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNI 325 (566)
T ss_pred cccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCE
Confidence 0 0011111233456666654 2222234555552 2234567788999999999
Q ss_pred EEEEeC---CCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEE------CCCcEE
Q 000054 2469 FLTGSK---DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCG------GDGSVK 2537 (2548)
Q Consensus 2469 LaSGS~---DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS------~DGtIr 2537 (2548)
++-+|- -|.|-|||+.+.+++..+. .-. .+-++|+||| |+|+. -|+.++
T Consensus 326 i~lAGFGNL~G~mEvwDv~n~K~i~~~~--------------a~~------tt~~eW~PdGe~flTATTaPRlrvdNg~K 385 (566)
T KOG2315|consen 326 ILLAGFGNLPGDMEVWDVPNRKLIAKFK--------------AAN------TTVFEWSPDGEYFLTATTAPRLRVDNGIK 385 (566)
T ss_pred EEEeecCCCCCceEEEeccchhhccccc--------------cCC------ceEEEEcCCCcEEEEEeccccEEecCCeE
Confidence 998876 5789999999988887662 111 1334899999 66654 389999
Q ss_pred EEECCCCc
Q 000054 2538 LIQLEDYQ 2545 (2548)
Q Consensus 2538 IWDL~sg~ 2545 (2548)
||+..+..
T Consensus 386 iwhytG~~ 393 (566)
T KOG2315|consen 386 IWHYTGSL 393 (566)
T ss_pred EEEecCce
Confidence 99987653
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00019 Score=90.95 Aligned_cols=260 Identities=13% Similarity=0.163 Sum_probs=153.4
Q ss_pred EEEEEcCCCCEEEEEEC----CCeEEEEEcCCC-ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC-CCcEE
Q 000054 2223 RAFSSHPLRPFFLVGSS----NTHIYLWEFGKD-KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DGTVC 2296 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~----DGsVrLWDl~tg-~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-DGtVr 2296 (2548)
.-++++|++++|.+... +|.|..|++... ..+..+..... .......++++|++++++++.. +|+|.
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-------~g~~p~~i~~~~~g~~l~vany~~g~v~ 112 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-------GGSSPCHIAVDPDGRFLYVANYGGGSVS 112 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-------SSSCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-------CCCCcEEEEEecCCCEEEEEEccCCeEE
Confidence 44667899999888765 579999998864 23333222110 1145678999999999999875 79999
Q ss_pred EEEcCCCcccccccCcc---------ceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCc--ceeee-c
Q 000054 2297 TWQLEVGGRSNVRPMES---------CLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--RASIT-C 2364 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s---------~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~--v~sl~-g 2364 (2548)
++++.....+....... ......|...+ .++|+|++++++.. ....|.+|++.....+. ...+. .
T Consensus 113 v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v-~~~pdg~~v~v~dl--G~D~v~~~~~~~~~~~l~~~~~~~~~ 189 (345)
T PF10282_consen 113 VFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQV-VFSPDGRFVYVPDL--GADRVYVYDIDDDTGKLTPVDSIKVP 189 (345)
T ss_dssp EEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEE-EE-TTSSEEEEEET--TTTEEEEEEE-TTS-TEEEEEEEECS
T ss_pred EEEccCCcccceeeeecccCCCCCcccccccccceeE-EECCCCCEEEEEec--CCCEEEEEEEeCCCceEEEeeccccc
Confidence 99998743222110000 00011222222 38999999988763 45689999997643222 22233 3
Q ss_pred cCCCeEEEEEccCCCCCCCCCCE-EEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCC
Q 000054 2365 HEGGARSISVFDNDLGSGSVSPL-IVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQN 2443 (2548)
Q Consensus 2365 Hs~~VtSLafsP~dlg~gs~g~l-LVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~s 2443 (2548)
...+.+.+.|+|+ +++ .++.-.++.|.++++. ...+...... .+...|.+
T Consensus 190 ~G~GPRh~~f~pd-------g~~~Yv~~e~s~~v~v~~~~-~~~g~~~~~~------------~~~~~~~~--------- 240 (345)
T PF10282_consen 190 PGSGPRHLAFSPD-------GKYAYVVNELSNTVSVFDYD-PSDGSLTEIQ------------TISTLPEG--------- 240 (345)
T ss_dssp TTSSEEEEEE-TT-------SSEEEEEETTTTEEEEEEEE-TTTTEEEEEE------------EEESCETT---------
T ss_pred cCCCCcEEEEcCC-------cCEEEEecCCCCcEEEEeec-ccCCceeEEE------------Eeeecccc---------
Confidence 3467899999998 454 4566678899999954 1233221111 00000000
Q ss_pred ceEEEcccCCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECC--CCcEE--EEecccccccccccCcccCCCCceeecEE
Q 000054 2444 GMLWYIPKAHLGSVTRISTVPNTSLFLTGSK-DGDVKLWDAK--AAQLV--YHWSKLHERHTFLQPSSRGFGGVVRAGVT 2518 (2548)
Q Consensus 2444 v~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~-DGtIrIWDl~--Tgell--~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vt 2518 (2548)
.........++++|+|++|+++.. ++.|.+|++. +|++. ..++ ..+ ....
T Consensus 241 -------~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~--------------~~G----~~Pr 295 (345)
T PF10282_consen 241 -------FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP--------------TGG----KFPR 295 (345)
T ss_dssp -------SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE--------------ESS----SSEE
T ss_pred -------ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe--------------CCC----CCcc
Confidence 011236788999999999888764 6789999993 34443 2221 111 1145
Q ss_pred EEEEcCCe--E-EEEECCCcEEEEECC--CCcc
Q 000054 2519 DIQVVSRG--F-LSCGGDGSVKLIQLE--DYQH 2546 (2548)
Q Consensus 2519 sLafSPdG--L-aSGS~DGtIrIWDL~--sg~l 2546 (2548)
.++++|+| | +++-.++.|.+|+++ +|.+
T Consensus 296 ~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 296 HFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp EEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence 67999999 4 455678899999874 5554
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.29 E-value=8.5e-05 Score=95.54 Aligned_cols=149 Identities=16% Similarity=0.130 Sum_probs=97.9
Q ss_pred EEEEEEcCCCCEEEEEECC---CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEE-EeCCC--cE
Q 000054 2222 TRAFSSHPLRPFFLVGSSN---THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFAS-AALDG--TV 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~D---GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaS-GS~DG--tV 2295 (2548)
+...+|+|+|++++.++.+ ..|++||+.+++..... . +.+.+.+++|+|+|+.|+. .+.++ .|
T Consensus 192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~----------~~~~~~~~~~spDg~~l~~~~~~~~~~~i 260 (417)
T TIGR02800 192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-S----------FPGMNGAPAFSPDGSKLAVSLSKDGNPDI 260 (417)
T ss_pred eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-c----------CCCCccceEECCCCCEEEEEECCCCCccE
Confidence 5677899999999976543 47999999887643321 1 1245667899999987764 45454 58
Q ss_pred EEEEcCCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCC--eEEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGI--NVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DG--tVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
.+||+.++.... +..+.... ..|+|+|+.|+.++. .++ .|.++|+.. ++ ...+..+...+..
T Consensus 261 ~~~d~~~~~~~~---------l~~~~~~~~~~~~s~dg~~l~~~s~--~~g~~~iy~~d~~~--~~-~~~l~~~~~~~~~ 326 (417)
T TIGR02800 261 YVMDLDGKQLTR---------LTNGPGIDTEPSWSPDGKSIAFTSD--RGGSPQIYMMDADG--GE-VRRLTFRGGYNAS 326 (417)
T ss_pred EEEECCCCCEEE---------CCCCCCCCCCEEECCCCCEEEEEEC--CCCCceEEEEECCC--CC-EEEeecCCCCccC
Confidence 888887664222 11121111 258899998876641 233 577777754 22 3344445566778
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCC---cEEEEeC
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGG---DVGIHDF 2402 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DG---tVrLWDL 2402 (2548)
+.|+|+ +..++.++.++ .|.+||+
T Consensus 327 ~~~spd-------g~~i~~~~~~~~~~~i~~~d~ 353 (417)
T TIGR02800 327 PSWSPD-------GDLIAFVHREGGGFNIAVMDL 353 (417)
T ss_pred eEECCC-------CCEEEEEEccCCceEEEEEeC
Confidence 899998 67888777765 7888884
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00042 Score=87.50 Aligned_cols=258 Identities=10% Similarity=0.014 Sum_probs=148.0
Q ss_pred CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC----------CCcEEEEEcCCCccccccc
Q 000054 2241 THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL----------DGTVCTWQLEVGGRSNVRP 2310 (2548)
Q Consensus 2241 GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~----------DGtVrVWDl~tgk~i~i~p 2310 (2548)
++|.+.|..+++.+.++..-. .-..+ ++|||+.++++.. +..|.+||..+.+.....+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~-----------~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~ 94 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGF-----------LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIE 94 (352)
T ss_pred ceEEEEECCCCEEEEEEEccC-----------CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEc
Confidence 899999999999888875411 11124 9999999888766 7899999999887543322
Q ss_pred Cccc-eeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEE
Q 000054 2311 MESC-LCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIV 2389 (2548)
Q Consensus 2311 ~~s~-~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLV 2389 (2548)
.... ....+.......++|||+++++... +.+..|.+.|+.+ .+.+..+.. .+...-....+. ...
T Consensus 95 ~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~-~p~~~V~VvD~~~--~kvv~ei~v-p~~~~vy~t~e~--------~~~- 161 (352)
T TIGR02658 95 LPEGPRFLVGTYPWMTSLTPDNKTLLFYQF-SPSPAVGVVDLEG--KAFVRMMDV-PDCYHIFPTAND--------TFF- 161 (352)
T ss_pred cCCCchhhccCccceEEECCCCCEEEEecC-CCCCEEEEEECCC--CcEEEEEeC-CCCcEEEEecCC--------ccE-
Confidence 1100 0011222234469999999988642 1488999999986 555555543 111111111111 111
Q ss_pred EEeCCCcEEEEeCCccccCceeeee-cC-CCCCCCccccccccCC-CCCC-ccCCCCCceEEEc-------------ccC
Q 000054 2390 TGGKGGDVGIHDFRYIATGKTKKHK-HS-DRGGSSINTCAHADAQ-TGSG-SKPGDQNGMLWYI-------------PKA 2452 (2548)
Q Consensus 2390 SGS~DGtVrLWDLR~l~TGk~l~tl-~~-~~~~s~~~~~~vafSp-dGk~-v~s~D~sv~Iwdi-------------~~g 2452 (2548)
+-+.||......+. .+|+....- .. +.......... .+.+ +|+. ..+..+++.+.|+ ...
T Consensus 162 ~~~~Dg~~~~v~~d--~~g~~~~~~~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR02658 162 MHCRDGSLAKVGYG--TKGNPKIKPTEVFHPEDEYLINHP-AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTE 238 (352)
T ss_pred EEeecCceEEEEec--CCCceEEeeeeeecCCccccccCC-ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccc
Confidence 22334444433321 122211100 00 00000011111 2233 5555 2333366665552 111
Q ss_pred -------CCCCEEEEEEeCCCCEEEEEeC----------CCcEEEEECCCCcEEEEecccccccccccCcccCCCCceee
Q 000054 2453 -------HLGSVTRISTVPNTSLFLTGSK----------DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRA 2515 (2548)
Q Consensus 2453 -------H~~~VtsLafSPdG~~LaSGS~----------DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a 2515 (2548)
..+.+.-++++|+++.++.+.. .+.|.++|..+++.+..++ -|+
T Consensus 239 ~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-------------vG~------ 299 (352)
T TIGR02658 239 AEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-------------LGH------ 299 (352)
T ss_pred cccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-------------CCC------
Confidence 2233445999999988887531 2579999999999999883 233
Q ss_pred cEEEEEEcCCe---E-EEEECCCcEEEEECCCCc
Q 000054 2516 GVTDIQVVSRG---F-LSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2516 ~VtsLafSPdG---L-aSGS~DGtIrIWDL~sg~ 2545 (2548)
.+..++++||| + ++...++.|.+.|..++.
T Consensus 300 ~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 300 EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 25677999999 3 455678999999998764
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.6e-05 Score=94.35 Aligned_cols=190 Identities=16% Similarity=0.231 Sum_probs=123.3
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCC-CCEEEEEeccCCCCeEEE
Q 000054 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSS-GSVIAAAGHSSNGINVVV 2348 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpd-GslLATgG~SS~DGtVrI 2348 (2548)
-.+..++|++.-..++++..|-+|++||-... +..+. + ......|. +|.|. ++.+++|+ .+.|.|
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~L-----k--s~sQrnvtclawRPlsaselavgC----r~gIci 166 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKL-----K--SVSQRNVTCLAWRPLSASELAVGC----RAGICI 166 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCC-CCcee-----c--chhhcceeEEEeccCCcceeeeee----cceeEE
Confidence 45788999998888999999999999997652 11110 1 11112333 46665 45666664 578999
Q ss_pred EECCCCC--CCc----------ceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe-CCCcEEEEeCCccccCceeeeec
Q 000054 2349 WDTLAPP--TSS----------RASITCHEGGARSISVFDNDLGSGSVSPLIVTGG-KGGDVGIHDFRYIATGKTKKHKH 2415 (2548)
Q Consensus 2349 WDl~t~~--~k~----------v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS-~DGtVrLWDLR~l~TGk~l~tl~ 2415 (2548)
|...... ... +....+| ..|+++.|.++ +..+++++ .|..|.||| ..++..+...
T Consensus 167 W~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~d-------gt~l~tAS~gsssi~iWd---pdtg~~~pL~- 234 (445)
T KOG2139|consen 167 WSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNED-------GTILVTASFGSSSIMIWD---PDTGQKIPLI- 234 (445)
T ss_pred EEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCC-------CCEEeecccCcceEEEEc---CCCCCccccc-
Confidence 9875321 111 1222244 58999999999 67788777 577999999 5555554332
Q ss_pred CCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccc
Q 000054 2416 SDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKL 2495 (2548)
Q Consensus 2416 ~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~ 2495 (2548)
...-+.++-+.|+|||.+|+.+.-|+..++|+..........
T Consensus 235 -----------------------------------~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw--- 276 (445)
T KOG2139|consen 235 -----------------------------------PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERW--- 276 (445)
T ss_pred -----------------------------------ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecce---
Confidence 123457888999999999999999999999965432211111
Q ss_pred ccccccccCcccCCCCceeecEEEEEEcCCe---EEEEECCCcEEE
Q 000054 2496 HERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVKL 2538 (2548)
Q Consensus 2496 Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIrI 2538 (2548)
. -+. +.| ....|+|+| |.+++..-.++-
T Consensus 277 ----~------lgs-grv----qtacWspcGsfLLf~~sgsp~lys 307 (445)
T KOG2139|consen 277 ----I------LGS-GRV----QTACWSPCGSFLLFACSGSPRLYS 307 (445)
T ss_pred ----e------ccC-Cce----eeeeecCCCCEEEEEEcCCceEEE
Confidence 0 122 234 344799999 567776655543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00012 Score=95.96 Aligned_cols=196 Identities=14% Similarity=0.178 Sum_probs=113.5
Q ss_pred CCeEEEEEccCCCEEEEEeCC-C--cEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCe--E
Q 000054 2272 ASISALQFDHYGHRFASAALD-G--TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGIN--V 2346 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~D-G--tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGt--V 2346 (2548)
..+.+..|+|||+.|+..+.+ + .|.+||+.+++...+. .+.++... ..|+|||+.|+... +.++. |
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt------~~~g~~~~-~~wSPDG~~La~~~--~~~g~~~I 288 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVT------SFPGINGA-PRFSPDGKKLALVL--SKDGQPEI 288 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEec------CCCCCcCC-eeECCCCCEEEEEE--eCCCCeEE
Confidence 678899999999998876543 3 5888888876532211 12222222 35899999887654 25564 7
Q ss_pred EEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEE-EeCCCcEEEEeCCccccCceeeeecCCCCCCCccc
Q 000054 2347 VVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVT-GGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINT 2425 (2548)
Q Consensus 2347 rIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVS-GS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~ 2425 (2548)
.++|+.+ + ....+..+........|+|+ ++.++. ...+|...+|-+. +.+++..+..
T Consensus 289 y~~dl~t--g-~~~~lt~~~~~~~~p~wSpD-------G~~I~f~s~~~g~~~Iy~~d-l~~g~~~~Lt----------- 346 (448)
T PRK04792 289 YVVDIAT--K-ALTRITRHRAIDTEPSWHPD-------GKSLIFTSERGGKPQIYRVN-LASGKVSRLT----------- 346 (448)
T ss_pred EEEECCC--C-CeEECccCCCCccceEECCC-------CCEEEEEECCCCCceEEEEE-CCCCCEEEEe-----------
Confidence 7777764 2 33444455556678899998 555554 4445554444322 3344432211
Q ss_pred cccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeC-CC--cEEEEECCCCcEEEEecccccccccc
Q 000054 2426 CAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSK-DG--DVKLWDAKAAQLVYHWSKLHERHTFL 2502 (2548)
Q Consensus 2426 ~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~-DG--tIrIWDl~Tgell~tL~~~Hs~hsfl 2502 (2548)
..++ .....+|+|+|++++..+. ++ .|.++|+.+++... +.
T Consensus 347 ------------------------~~g~--~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt--------- 390 (448)
T PRK04792 347 ------------------------FEGE--QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LT--------- 390 (448)
T ss_pred ------------------------cCCC--CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-cc---------
Confidence 0111 1234689999998877655 34 45667888776532 21
Q ss_pred cCcccCCCCceeecEEEEEEcCCe--EE-EEECCCc--EEEEECCCC
Q 000054 2503 QPSSRGFGGVVRAGVTDIQVVSRG--FL-SCGGDGS--VKLIQLEDY 2544 (2548)
Q Consensus 2503 ~~tl~GH~~~V~a~VtsLafSPdG--La-SGS~DGt--IrIWDL~sg 2544 (2548)
.+.. . ....|+|+| |+ +...+|. +.+++++++
T Consensus 391 ----~~~~--d----~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 391 ----STRL--D----ESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred ----CCCC--C----CCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 1110 0 122699999 44 4444443 677777654
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.5e-05 Score=92.99 Aligned_cols=197 Identities=14% Similarity=0.119 Sum_probs=135.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCC-ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKD-KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg-~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
+.+++++++...|+.|-..|++.-+.+... +.....+ ....|...|..+-|+.....+++.+.|..+.---.
T Consensus 71 ~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r-------~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~ 143 (404)
T KOG1409|consen 71 CSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLK-------DYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCT 143 (404)
T ss_pred ceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhh-------hhhhhhcceeeEEecCCceeEEEeccccceEEEee
Confidence 688999999999999999999988876532 1122221 23346799999999999999999999988754444
Q ss_pred CCCcccccccCccceeccCCcccEE-EEcC--CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVS-YITS--SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~-afSp--dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
+.+.... |-.-.+ +..+ |-.+...|. ..|.|.+-.+.......+..+.+|.+.+.++.|.+.
T Consensus 144 e~~~~lg------------~Y~~~~~~t~~~~d~~~~fvGd---~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~ 208 (404)
T KOG1409|consen 144 ESGNRLG------------GYNFETPASALQFDALYAFVGD---HSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG 208 (404)
T ss_pred ccCCccc------------ceEeeccCCCCceeeEEEEecc---cccceEEEEEeecCCceEEEEcCcccceEEEEEcCC
Confidence 4443211 110000 0000 001222322 445555555544335678899999999999999998
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCE
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSV 2457 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~V 2457 (2548)
..++.+|..|..|.+||+. ..++.. . ...+|...|
T Consensus 209 -------~~~LfSg~~d~~vi~wdig-g~~g~~--~-----------------------------------el~gh~~kV 243 (404)
T KOG1409|consen 209 -------QRLLFSGASDHSVIMWDIG-GRKGTA--Y-----------------------------------ELQGHNDKV 243 (404)
T ss_pred -------CcEEEeccccCceEEEecc-CCccee--e-----------------------------------eeccchhhh
Confidence 5799999999999999964 112211 1 126788888
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 000054 2458 TRISTVPNTSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS~DGtIrIWDl~T 2485 (2548)
..+...+..+.+++++.||.|.+||++.
T Consensus 244 ~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 244 QALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 8888888888899999999999999864
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.7e-05 Score=93.96 Aligned_cols=282 Identities=15% Similarity=0.175 Sum_probs=167.1
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc--eeEEEeccCCCCCCCCC-----CCCCeEEEEEccCC--CEEEEEeCC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK--ATATYGVLPAANVPPPY-----ALASISALQFDHYG--HRFASAALD 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~--~l~t~~~l~ghs~~~~~-----H~~~VtsVaFSPdG--~~LaSGS~D 2292 (2548)
+.++.|.-.|.|+++|...|.|.+|.-.... ..+-+..+++|.....+ -...|..+.|-.++ ..++..+.|
T Consensus 29 ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNd 108 (460)
T COG5170 29 ITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTND 108 (460)
T ss_pred eeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCC
Confidence 7899999999999999999999999876533 22334445665532222 12578899997643 457777899
Q ss_pred CcEEEEEcCCCccc-------------c-cccCcc--------------------cee-ccCCcccEEE--EcCCCCEEE
Q 000054 2293 GTVCTWQLEVGGRS-------------N-VRPMES--------------------CLC-FSSHAMDVSY--ITSSGSVIA 2335 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i-------------~-i~p~~s--------------------~~t-~~gH~~~V~a--fSpdGslLA 2335 (2548)
++|++|.+...... . ..|..+ ... -..|..-+.+ ++.|...++
T Consensus 109 ktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~l 188 (460)
T COG5170 109 KTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLL 188 (460)
T ss_pred ceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheee
Confidence 99999987532000 0 000000 000 1234433333 566777888
Q ss_pred EEeccCCCCeEEEEECCCCCCCc-ceeeeccC-----CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCc
Q 000054 2336 AAGHSSNGINVVVWDTLAPPTSS-RASITCHE-----GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGK 2409 (2548)
Q Consensus 2336 TgG~SS~DGtVrIWDl~t~~~k~-v~sl~gHs-----~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk 2409 (2548)
++ +|-.|.+|++...++.. +..++.|. .-|++..|+|.. ...+.-.+..|.|++-|+|+..-..
T Consensus 189 Sa----DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~------cn~fmYSsSkG~Ikl~DlRq~alcd 258 (460)
T COG5170 189 SA----DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEM------CNVFMYSSSKGEIKLNDLRQSALCD 258 (460)
T ss_pred ec----cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhH------cceEEEecCCCcEEehhhhhhhhcc
Confidence 86 78999999998643332 34444543 468899999985 6688888899999999988511100
Q ss_pred eeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-CcE
Q 000054 2410 TKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA-AQL 2488 (2548)
Q Consensus 2410 ~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~T-gel 2488 (2548)
....+. ...-|+ .-.+.+.+-...|..+.|+++|+++++-+. -+|+|||++. ..+
T Consensus 259 n~~klf-------------e~~~D~----------v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~p 314 (460)
T COG5170 259 NSKKLF-------------ELTIDG----------VDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNP 314 (460)
T ss_pred Cchhhh-------------hhccCc----------ccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCC
Confidence 000000 000000 001122444568889999999999987654 5899999984 567
Q ss_pred EEEecccccccc-cccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEEC
Q 000054 2489 VYHWSKLHERHT-FLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2489 l~tL~~~Hs~hs-fl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL 2541 (2548)
+.+++ .|..-. -+.... ..+.|-+ -..+.||.+. +++|+.....-+|-.
T Consensus 315 ikTi~-~h~~l~~~l~d~Y--EnDaifd-kFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 315 IKTIP-MHCDLMDELNDVY--ENDAIFD-KFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred ceeec-hHHHHHHHHHhhh--hccceee-eEEEEecCCcccccccccccceeeecc
Confidence 77773 221100 000000 0111211 1345666655 777777666666653
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00022 Score=92.66 Aligned_cols=213 Identities=14% Similarity=0.149 Sum_probs=124.4
Q ss_pred eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC---CcEEEEEcCCCcccccccCccceecc
Q 000054 2242 HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD---GTVCTWQLEVGGRSNVRPMESCLCFS 2318 (2548)
Q Consensus 2242 sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D---GtVrVWDl~tgk~i~i~p~~s~~t~~ 2318 (2548)
.|.++|.+.+... .+.. +...+....|+|||+.|+..+.+ ..|.+||+.++....+. ...
T Consensus 180 ~l~~~d~~g~~~~-~l~~----------~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~------~~~ 242 (430)
T PRK00178 180 TLQRSDYDGARAV-TLLQ----------SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT------NFE 242 (430)
T ss_pred EEEEECCCCCCce-EEec----------CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc------CCC
Confidence 4777777654432 2211 23678999999999999876644 36888999877532211 122
Q ss_pred CCcccEEEEcCCCCEEEEEeccCCCC--eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe-CCC
Q 000054 2319 SHAMDVSYITSSGSVIAAAGHSSNGI--NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGG-KGG 2395 (2548)
Q Consensus 2319 gH~~~V~afSpdGslLATgG~SS~DG--tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS-~DG 2395 (2548)
++.. -..|+|||+.++... +.++ .|.+||+.++ ....+..+........|+|+ ++.++..+ .+|
T Consensus 243 g~~~-~~~~SpDG~~la~~~--~~~g~~~Iy~~d~~~~---~~~~lt~~~~~~~~~~~spD-------g~~i~f~s~~~g 309 (430)
T PRK00178 243 GLNG-APAWSPDGSKLAFVL--SKDGNPEIYVMDLASR---QLSRVTNHPAIDTEPFWGKD-------GRTLYFTSDRGG 309 (430)
T ss_pred CCcC-CeEECCCCCEEEEEE--ccCCCceEEEEECCCC---CeEEcccCCCCcCCeEECCC-------CCEEEEEECCCC
Confidence 2222 235899999887543 2344 6888898752 23344555556677889998 55555444 445
Q ss_pred c--EEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEe
Q 000054 2396 D--VGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGS 2473 (2548)
Q Consensus 2396 t--VrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS 2473 (2548)
. |.++| +.+++..+.. ..+ .......|+|+|+.++..+
T Consensus 310 ~~~iy~~d---~~~g~~~~lt-----------------------------------~~~--~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 310 KPQIYKVN---VNGGRAERVT-----------------------------------FVG--NYNARPRLSADGKTLVMVH 349 (430)
T ss_pred CceEEEEE---CCCCCEEEee-----------------------------------cCC--CCccceEECCCCCEEEEEE
Confidence 4 55556 3344432211 011 1123467999999988776
Q ss_pred CC-C--cEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EE-EEECC--CcEEEEECCCC
Q 000054 2474 KD-G--DVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FL-SCGGD--GSVKLIQLEDY 2544 (2548)
Q Consensus 2474 ~D-G--tIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--La-SGS~D--GtIrIWDL~sg 2544 (2548)
.+ + .|.+||+.+++.. .+. .+.. . ....|+|+| ++ +...+ +.|.+++++++
T Consensus 350 ~~~~~~~l~~~dl~tg~~~-~lt-------------~~~~--~----~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 350 RQDGNFHVAAQDLQRGSVR-ILT-------------DTSL--D----ESPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred ccCCceEEEEEECCCCCEE-Ecc-------------CCCC--C----CCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 53 3 5888999887653 231 1110 0 123799999 44 43333 34667777654
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00018 Score=93.36 Aligned_cols=151 Identities=11% Similarity=0.084 Sum_probs=90.7
Q ss_pred EEEEEEcCCCCEEEEEECC---CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEE-EEeCCC--cE
Q 000054 2222 TRAFSSHPLRPFFLVGSSN---THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALDG--TV 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~D---GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~La-SGS~DG--tV 2295 (2548)
+...+|+|||+.|+..+.+ ..|.+||+.+++.... ... .+.+...+|+|||++++ +.+.+| .|
T Consensus 201 ~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~----------~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 201 ILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNF----------EGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred eeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCC----------CCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 5778999999999865533 4689999988764332 111 13355689999999887 455555 57
Q ss_pred EEEEcCCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
.+||++++.... +..+.... ..|+|||+.++.......+..|.++|+.. ++. ..+...........
T Consensus 270 y~~d~~~~~~~~---------lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~--g~~-~~lt~~~~~~~~~~ 337 (430)
T PRK00178 270 YVMDLASRQLSR---------VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNG--GRA-ERVTFVGNYNARPR 337 (430)
T ss_pred EEEECCCCCeEE---------cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCC--CCE-EEeecCCCCccceE
Confidence 778888764321 11121111 25899999887664211123566777754 332 22222223334567
Q ss_pred EccCCCCCCCCCCEEEEEeC-CC--cEEEEeC
Q 000054 2374 VFDNDLGSGSVSPLIVTGGK-GG--DVGIHDF 2402 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~-DG--tVrLWDL 2402 (2548)
|+|+ ++.++..+. ++ .|.++|+
T Consensus 338 ~Spd-------g~~i~~~~~~~~~~~l~~~dl 362 (430)
T PRK00178 338 LSAD-------GKTLVMVHRQDGNFHVAAQDL 362 (430)
T ss_pred ECCC-------CCEEEEEEccCCceEEEEEEC
Confidence 8888 566666554 33 4777883
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00021 Score=91.27 Aligned_cols=194 Identities=19% Similarity=0.145 Sum_probs=123.4
Q ss_pred EEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCcc
Q 000054 2234 FLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMES 2313 (2548)
Q Consensus 2234 LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s 2313 (2548)
+++-..+|.|.+.|..+.+.+..+.... ..-..+.|+|||+++++++.||.|.++|+.+++.+...
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~----------~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i---- 74 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGG----------APHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI---- 74 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-ST----------TEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE----
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCC----------CceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE----
Confidence 3456778999999999999988885311 22345789999999999999999999999988744321
Q ss_pred ceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc-------CCCeEEEEEccCCCCCCCCCC
Q 000054 2314 CLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH-------EGGARSISVFDNDLGSGSVSP 2386 (2548)
Q Consensus 2314 ~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH-------s~~VtSLafsP~dlg~gs~g~ 2386 (2548)
-.+....-.++++||++++++.+ .++.+.++|.++ .+.+..+... ...+..+..+|. .+
T Consensus 75 ---~~G~~~~~i~~s~DG~~~~v~n~--~~~~v~v~D~~t--le~v~~I~~~~~~~~~~~~Rv~aIv~s~~-------~~ 140 (369)
T PF02239_consen 75 ---KVGGNPRGIAVSPDGKYVYVANY--EPGTVSVIDAET--LEPVKTIPTGGMPVDGPESRVAAIVASPG-------RP 140 (369)
T ss_dssp ---E-SSEEEEEEE--TTTEEEEEEE--ETTEEEEEETTT----EEEEEE--EE-TTTS---EEEEEE-SS-------SS
T ss_pred ---ecCCCcceEEEcCCCCEEEEEec--CCCceeEecccc--ccceeecccccccccccCCCceeEEecCC-------CC
Confidence 12222233468999999998863 689999999976 6666666532 345677777776 45
Q ss_pred EEEEEeC-CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCC
Q 000054 2387 LIVTGGK-GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPN 2465 (2548)
Q Consensus 2387 lLVSGS~-DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPd 2465 (2548)
.++..-. .+.|-+-|... .+.+... . ...........|+|+
T Consensus 141 ~fVv~lkd~~~I~vVdy~d---~~~~~~~-------------------------------~----i~~g~~~~D~~~dpd 182 (369)
T PF02239_consen 141 EFVVNLKDTGEIWVVDYSD---PKNLKVT-------------------------------T----IKVGRFPHDGGFDPD 182 (369)
T ss_dssp EEEEEETTTTEEEEEETTT---SSCEEEE-------------------------------E----EE--TTEEEEEE-TT
T ss_pred EEEEEEccCCeEEEEEecc---cccccee-------------------------------e----ecccccccccccCcc
Confidence 4555544 47777777432 2222111 0 112234456789999
Q ss_pred CCEEEEE-eCCCcEEEEECCCCcEEEEec
Q 000054 2466 TSLFLTG-SKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2466 G~~LaSG-S~DGtIrIWDl~Tgell~tL~ 2493 (2548)
++|++.+ ..+..|-++|.++++.+..+.
T Consensus 183 gry~~va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 183 GRYFLVAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp SSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred cceeeecccccceeEEEeeccceEEEEee
Confidence 9988775 457799999999998877653
|
... |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00018 Score=94.13 Aligned_cols=147 Identities=12% Similarity=0.112 Sum_probs=86.1
Q ss_pred EEEEEEcCCCCEEEEEEC-CC--eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEE-EeCCCc--E
Q 000054 2222 TRAFSSHPLRPFFLVGSS-NT--HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFAS-AALDGT--V 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~-DG--sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaS-GS~DGt--V 2295 (2548)
+....|+|||+.|+..+. ++ .|.+||+.+++... +.... +.....+|+|||+.|+. .+.+|. |
T Consensus 220 ~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~----------g~~~~~~wSPDG~~La~~~~~~g~~~I 288 (448)
T PRK04792 220 LMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFP----------GINGAPRFSPDGKKLALVLSKDGQPEI 288 (448)
T ss_pred ccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCC----------CCcCCeeECCCCCEEEEEEeCCCCeEE
Confidence 467889999999886543 33 58888988776432 22111 23346899999998865 566775 6
Q ss_pred EEEEcCCCcccccccCccceeccCCcc--cEEEEcCCCCEEEEEeccCCCC--eEEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAM--DVSYITSSGSVIAAAGHSSNGI--NVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~--~V~afSpdGslLATgG~SS~DG--tVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
.++|+++++... +..+.. .-..|+|||+.++.... .++ .|.++|+.. ++. ..+..+......
T Consensus 289 y~~dl~tg~~~~---------lt~~~~~~~~p~wSpDG~~I~f~s~--~~g~~~Iy~~dl~~--g~~-~~Lt~~g~~~~~ 354 (448)
T PRK04792 289 YVVDIATKALTR---------ITRHRAIDTEPSWHPDGKSLIFTSE--RGGKPQIYRVNLAS--GKV-SRLTFEGEQNLG 354 (448)
T ss_pred EEEECCCCCeEE---------CccCCCCccceEECCCCCEEEEEEC--CCCCceEEEEECCC--CCE-EEEecCCCCCcC
Confidence 667777664221 112221 11258999998877642 344 455566654 332 222222233445
Q ss_pred EEEccCCCCCCCCCCEEEEEe-CCCcEEEE
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGG-KGGDVGIH 2400 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS-~DGtVrLW 2400 (2548)
..|+|+ ++.++..+ .++..+||
T Consensus 355 ~~~SpD-------G~~l~~~~~~~g~~~I~ 377 (448)
T PRK04792 355 GSITPD-------GRSMIMVNRTNGKFNIA 377 (448)
T ss_pred eeECCC-------CCEEEEEEecCCceEEE
Confidence 688988 56665544 34544443
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0002 Score=93.24 Aligned_cols=203 Identities=11% Similarity=0.024 Sum_probs=117.5
Q ss_pred EEEEEcCCCCEE---EEEECC--CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC-CC---
Q 000054 2223 RAFSSHPLRPFF---LVGSSN--THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DG--- 2293 (2548)
Q Consensus 2223 ~~VsfSPdG~~L---ASGS~D--GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-DG--- 2293 (2548)
..-.|+|||+.+ .+...+ ..|.+.++.+++.... ..++ +.....+|+|||+.|+..+. +|
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~----------g~~~~p~wSPDG~~Laf~s~~~g~~d 256 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQ----------GNQLMPTFSPRKKLLAFISDRYGNPD 256 (428)
T ss_pred ccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCC----------CCccceEECCCCCEEEEEECCCCCcc
Confidence 455899999742 244333 3577778877754332 2222 34556899999998887653 23
Q ss_pred -cEEEEEcCCCcccccccCccceeccCCccc--EEEEcCCCCEEEEEeccCCCCeEEEEECCCC-CCCcceeeeccCCCe
Q 000054 2294 -TVCTWQLEVGGRSNVRPMESCLCFSSHAMD--VSYITSSGSVIAAAGHSSNGINVVVWDTLAP-PTSSRASITCHEGGA 2369 (2548)
Q Consensus 2294 -tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~--V~afSpdGslLATgG~SS~DGtVrIWDl~t~-~~k~v~sl~gHs~~V 2369 (2548)
.+..|++..+...... +...++... -..|+|||+.|+... ..+|...+|.+... .+.....+..+...+
T Consensus 257 i~~~~~~~~~g~~g~~~-----~lt~~~~~~~~~p~wSPDG~~Laf~s--~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~ 329 (428)
T PRK01029 257 LFIQSFSLETGAIGKPR-----RLLNEAFGTQGNPSFSPDGTRLVFVS--NKDGRPRIYIMQIDPEGQSPRLLTKKYRNS 329 (428)
T ss_pred eeEEEeecccCCCCcce-----EeecCCCCCcCCeEECCCCCEEEEEE--CCCCCceEEEEECcccccceEEeccCCCCc
Confidence 4445776653111101 111111111 125999999888764 24565556654321 122334454555677
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCC---CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceE
Q 000054 2370 RSISVFDNDLGSGSVSPLIVTGGKG---GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGML 2446 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~D---GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~I 2446 (2548)
....|+|+ |+.|+..+.+ ..|.+|| +.+++.....
T Consensus 330 ~~p~wSPD-------G~~Laf~~~~~g~~~I~v~d---l~~g~~~~Lt-------------------------------- 367 (428)
T PRK01029 330 SCPAWSPD-------GKKIAFCSVIKGVRQICVYD---LATGRDYQLT-------------------------------- 367 (428)
T ss_pred cceeECCC-------CCEEEEEEcCCCCcEEEEEE---CCCCCeEEcc--------------------------------
Confidence 88999999 6777655433 3688888 4445432221
Q ss_pred EEcccCCCCCEEEEEEeCCCCEEEEEeC---CCcEEEEECCCCcEEE
Q 000054 2447 WYIPKAHLGSVTRISTVPNTSLFLTGSK---DGDVKLWDAKAAQLVY 2490 (2548)
Q Consensus 2447 wdi~~gH~~~VtsLafSPdG~~LaSGS~---DGtIrIWDl~Tgell~ 2490 (2548)
.....+....|+|||+.|+..+. ++.|.+||+.+++...
T Consensus 368 -----~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 368 -----TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred -----CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 11223456889999998775433 3578889998776543
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00037 Score=90.86 Aligned_cols=205 Identities=12% Similarity=0.090 Sum_probs=115.7
Q ss_pred CCeEEEEEccCCCEE---EEEeCCC--cEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEecc--CCCC
Q 000054 2272 ASISALQFDHYGHRF---ASAALDG--TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHS--SNGI 2344 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~L---aSGS~DG--tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~S--S~DG 2344 (2548)
..+.+=+|+|||+.+ ++...+| .|.+.++.+++...+ ..+.+... .-.|+|||+.|+..... ..+.
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l------t~~~g~~~-~p~wSPDG~~Laf~s~~~g~~di 257 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI------LALQGNQL-MPTFSPRKKLLAFISDRYGNPDL 257 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe------ecCCCCcc-ceEECCCCCEEEEEECCCCCcce
Confidence 445677999999752 3455554 566667776643221 11233222 13599999988876410 0122
Q ss_pred eEEEEECCCCC-CCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe-CCCcEEEEeCCccccCceeeeecCCCCCCC
Q 000054 2345 NVVVWDTLAPP-TSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGG-KGGDVGIHDFRYIATGKTKKHKHSDRGGSS 2422 (2548)
Q Consensus 2345 tVrIWDl~t~~-~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS-~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~ 2422 (2548)
.+.+|++.... +........+.+......|+|+ |+.|+..+ .+|...+|.+..-..+...+.+
T Consensus 258 ~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPD-------G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l-------- 322 (428)
T PRK01029 258 FIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPD-------GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL-------- 322 (428)
T ss_pred eEEEeecccCCCCcceEeecCCCCCcCCeEECCC-------CCEEEEEECCCCCceEEEEECcccccceEEe--------
Confidence 34456765421 2223333233344567899999 66666544 5776666653210011111111
Q ss_pred ccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCC---CcEEEEECCCCcEEEEeccccccc
Q 000054 2423 INTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKD---GDVKLWDAKAAQLVYHWSKLHERH 2499 (2548)
Q Consensus 2423 ~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~D---GtIrIWDl~Tgell~tL~~~Hs~h 2499 (2548)
..+...+....|+|||+.|+..+.+ ..|.+||+.+++... +.
T Consensus 323 ----------------------------t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt------ 367 (428)
T PRK01029 323 ----------------------------TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LT------ 367 (428)
T ss_pred ----------------------------ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-cc------
Confidence 2233455678899999988876543 379999999887643 21
Q ss_pred ccccCcccCCCCceeecEEEEEEcCCe--EE-EEE--CCCcEEEEECCCCc
Q 000054 2500 TFLQPSSRGFGGVVRAGVTDIQVVSRG--FL-SCG--GDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2500 sfl~~tl~GH~~~V~a~VtsLafSPdG--La-SGS--~DGtIrIWDL~sg~ 2545 (2548)
.+ .. .+.+..|+||| |+ ++. .++.|.+++++++.
T Consensus 368 -------~~-~~----~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 368 -------TS-PE----NKESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred -------CC-CC----CccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 11 11 12345899999 44 333 24578888988764
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.2e-05 Score=91.56 Aligned_cols=237 Identities=16% Similarity=0.129 Sum_probs=153.6
Q ss_pred CCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC-CcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeE
Q 000054 2268 PYALASISALQFDHYGHRFASAALDGTVCTWQLEV-GGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2268 ~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t-gk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtV 2346 (2548)
.+|.+.|++...-|-..-+++.+.|.++++|--+. ++.-. ...-.......+..+.+....|+.+- ++|++
T Consensus 21 eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wp-----sI~~~mP~~~~~~~y~~e~~~L~vg~---~ngtv 92 (404)
T KOG1409|consen 21 EGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWP-----SIYHYMPSPCSAMEYVSESRRLYVGQ---DNGTV 92 (404)
T ss_pred cCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCc-----hhhhhCCCCceEeeeeccceEEEEEE---ecceE
Confidence 45668888888888777899999999999996543 32111 11112222334445666777777764 78999
Q ss_pred EEEECCCC--CCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcc
Q 000054 2347 VVWDTLAP--PTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSIN 2424 (2548)
Q Consensus 2347 rIWDl~t~--~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~ 2424 (2548)
.-+.+... .....+....|...|..+.|+-. ..++++.+.|..+.-.- .+.+..+..........
T Consensus 93 tefs~sedfnkm~~~r~~~~h~~~v~~~if~~~-------~e~V~s~~~dk~~~~hc---~e~~~~lg~Y~~~~~~t--- 159 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQARVSAIVFSLT-------HEWVLSTGKDKQFAWHC---TESGNRLGGYNFETPAS--- 159 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhhcceeeEEecCC-------ceeEEEeccccceEEEe---eccCCcccceEeeccCC---
Confidence 88876421 12345666789999999999876 57999999998876555 33333332210000000
Q ss_pred ccccccCCCCCCccCCCCCceEEE----------cccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 000054 2425 TCAHADAQTGSGSKPGDQNGMLWY----------IPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSK 2494 (2548)
Q Consensus 2425 ~~~vafSpdGk~v~s~D~sv~Iwd----------i~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~ 2494 (2548)
...+.-.-.+++...+.+.... .+.+|.+.+++++|+|....|++|..|..|.+||+.-++-+...
T Consensus 160 --~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~e-- 235 (404)
T KOG1409|consen 160 --ALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYE-- 235 (404)
T ss_pred --CCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeee--
Confidence 0000000111333444443332 45789999999999999999999999999999999765544322
Q ss_pred cccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000054 2495 LHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2495 ~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
+.||.+.|.+. ..-+.- +.+++.||.|.+|+++..
T Consensus 236 -----------l~gh~~kV~~l----~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 236 -----------LQGHNDKVQAL----SYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred -----------eccchhhhhhh----hhhhhheeeeeccCCCeEEEEeccce
Confidence 47787777543 222222 899999999999999754
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.3e-05 Score=92.99 Aligned_cols=220 Identities=23% Similarity=0.315 Sum_probs=129.9
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCc---------------ccEEEEcC-CCCEEE
Q 000054 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHA---------------MDVSYITS-SGSVIA 2335 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~---------------~~V~afSp-dGslLA 2335 (2548)
+-|.+|.|..+|.+|+||+.+|.|.++.-+..... .......++.|. ..|.++.+ +...+.
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~---ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG---EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeeccccccc---ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 67999999999999999999999999986543210 011111233333 23333333 233444
Q ss_pred EEeccCCCCeEEEEECCCCCCCc---------------------------------ceee-eccCCCeEEEEEccCCCCC
Q 000054 2336 AAGHSSNGINVVVWDTLAPPTSS---------------------------------RASI-TCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2336 TgG~SS~DGtVrIWDl~t~~~k~---------------------------------v~sl-~gHs~~VtSLafsP~dlg~ 2381 (2548)
..+ .|++|++|.+.....+. .+.+ .+|+--|+++.++.+
T Consensus 103 lst---NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD---- 175 (433)
T KOG1354|consen 103 LST---NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSD---- 175 (433)
T ss_pred Eec---CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCc----
Confidence 444 89999999986422111 0011 146667788887776
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc----CCCCCE
Q 000054 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK----AHLGSV 2457 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~----gH~~~V 2457 (2548)
...++++ .|=.|.+|++.. .|+.-.|.|+-. .-..-|
T Consensus 176 ---~Et~lSA-DdLRINLWnlei-----------------------------------~d~sFnIVDIKP~nmEeLteVI 216 (433)
T KOG1354|consen 176 ---KETFLSA-DDLRINLWNLEI-----------------------------------IDQSFNIVDIKPANMEELTEVI 216 (433)
T ss_pred ---cceEeec-cceeeeeccccc-----------------------------------cCCceeEEEccccCHHHHHHHH
Confidence 4455554 477788888542 111122333322 224468
Q ss_pred EEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCc
Q 000054 2458 TRISTVPN-TSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGS 2535 (2548)
Q Consensus 2458 tsLafSPd-G~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGt 2535 (2548)
++..|+|. ..+|+-.+..|+|++-|++...+...-.+..+.. ..+.-+..-..|-+.|.++.|+++| ++-.-+--+
T Consensus 217 TsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep--edp~~rsffseiIsSISDvKFs~sGryilsRDylt 294 (433)
T KOG1354|consen 217 TSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP--EDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLT 294 (433)
T ss_pred hhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc--cCCcchhhHHHHhhhhhceEEccCCcEEEEeccce
Confidence 88899995 5788888899999999999554432111000000 0011111112233668999999999 443334489
Q ss_pred EEEEECC
Q 000054 2536 VKLIQLE 2542 (2548)
Q Consensus 2536 IrIWDL~ 2542 (2548)
|++||+.
T Consensus 295 vk~wD~n 301 (433)
T KOG1354|consen 295 VKLWDLN 301 (433)
T ss_pred eEEEecc
Confidence 9999984
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00097 Score=95.32 Aligned_cols=283 Identities=10% Similarity=0.088 Sum_probs=154.3
Q ss_pred EEEcC-CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCC----CCCCCCCeEEEEEccCCCEEEEEeC-CCcEEEE
Q 000054 2225 FSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVP----PPYALASISALQFDHYGHRFASAAL-DGTVCTW 2298 (2548)
Q Consensus 2225 VsfSP-dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~----~~~H~~~VtsVaFSPdG~~LaSGS~-DGtVrVW 2298 (2548)
+++++ ++.++++-+.++.|+++|.. +..+..+......... ...+...-..|+++++++.|+++.. ++.|+++
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i 651 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI 651 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence 45556 46677777888999999975 4444443221000000 0112345688999998887766654 5789999
Q ss_pred EcCCCcccccccCcc-ceecc----------CCcccEEEEcCC-CCEEEEEeccCCCCeEEEEECCCCCCCcceeeec--
Q 000054 2299 QLEVGGRSNVRPMES-CLCFS----------SHAMDVSYITSS-GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC-- 2364 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s-~~t~~----------gH~~~V~afSpd-GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g-- 2364 (2548)
|..++....+..... ..... .+...| +++++ +.++++. +.++.|++||.... .+..+.+
T Consensus 652 d~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gV-a~dp~~g~LyVad---~~~~~I~v~d~~~g---~v~~~~G~G 724 (1057)
T PLN02919 652 DFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDV-CFEPVNEKVYIAM---AGQHQIWEYNISDG---VTRVFSGDG 724 (1057)
T ss_pred ecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEE-EEecCCCeEEEEE---CCCCeEEEEECCCC---eEEEEecCC
Confidence 987653211100000 00000 111122 57774 4555554 37889999998642 1212211
Q ss_pred -------c------CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccC
Q 000054 2365 -------H------EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADA 2431 (2548)
Q Consensus 2365 -------H------s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafS 2431 (2548)
+ -...+.|+++|++ +.++++-+.++.|++||+ .++........... .
T Consensus 725 ~~~~~~g~~~~~~~~~~P~GIavspdG------~~LYVADs~n~~Irv~D~---~tg~~~~~~gg~~~-----------~ 784 (1057)
T PLN02919 725 YERNLNGSSGTSTSFAQPSGISLSPDL------KELYIADSESSSIRALDL---KTGGSRLLAGGDPT-----------F 784 (1057)
T ss_pred ccccCCCCccccccccCccEEEEeCCC------CEEEEEECCCCeEEEEEC---CCCcEEEEEecccc-----------c
Confidence 1 1235678888883 336677778899999994 34432111100000 0
Q ss_pred CCCCC-ccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccc-cCcccCC
Q 000054 2432 QTGSG-SKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFL-QPSSRGF 2509 (2548)
Q Consensus 2432 pdGk~-v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl-~~tl~GH 2509 (2548)
++... .+..++... ...-..-.+++++++|.++++-+.++.|++||..++...... +. ....+. .....+.
T Consensus 785 ~~~l~~fG~~dG~g~-----~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia-G~-G~~G~~dG~~~~a~ 857 (1057)
T PLN02919 785 SDNLFKFGDHDGVGS-----EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA-GT-GKAGFKDGKALKAQ 857 (1057)
T ss_pred CcccccccCCCCchh-----hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe-cc-CCcCCCCCcccccc
Confidence 00000 011111000 011122358899999999999999999999999887665432 10 000000 0000011
Q ss_pred CCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCcc
Q 000054 2510 GGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2510 ~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~l 2546 (2548)
- .....++++++| +++.+.+++|++||+.++..
T Consensus 858 l----~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 858 L----SEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred c----CCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 1 124677999999 77888999999999988743
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.3e-05 Score=88.74 Aligned_cols=213 Identities=16% Similarity=0.158 Sum_probs=119.7
Q ss_pred eEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCC-C-CCCCCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 000054 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAAN-V-PPPYALASISALQFDHYGHRFASAALDGTVCT 2297 (2548)
Q Consensus 2220 V~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs-~-~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrV 2297 (2548)
+.+..+.+.-+ ..|+++..++.+......++.+......-.+.. + -..+|.+.-.+-+.+-.++.++++..||.+.+
T Consensus 37 ~~~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v 115 (319)
T KOG4714|consen 37 VKLSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAV 115 (319)
T ss_pred eEEEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEE
Confidence 44566665443 356677666666555544433322111000000 0 00011122112222234677999999999999
Q ss_pred EEcCCCcccccccCccceeccCCcccE-EEEcCCCCEEEEEecc--CCCCeEEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMDV-SYITSSGSVIAAAGHS--SNGINVVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V-~afSpdGslLATgG~S--S~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
.+.+...... .. .-..|.+.. .++...++.+.++++. ..-+..++|+++.. ...+...+ -...|++++-
T Consensus 116 ~s~~~~~~~~-~~-----i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~-~t~~~~~~-~~~~v~~l~~ 187 (319)
T KOG4714|consen 116 FSTDKDLALM-SR-----IPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPI-KTLIPSKK-ALDAVTALCS 187 (319)
T ss_pred EechHHHhhh-hh-----cccccccccccceeecccEEecCCcceEeeccceeeeccccc-cccccccc-ccccchhhhC
Confidence 9987521110 00 011111111 1233355666665421 02234566776531 11111111 2234999999
Q ss_pred ccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000054 2375 FDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
+|.. ..++++|+.||.+-+||.|+.. ... ..+..|+
T Consensus 188 hp~q------q~~v~cgt~dg~~~l~d~rn~~--~p~------------------------------------S~l~ahk 223 (319)
T KOG4714|consen 188 HPAQ------QHLVCCGTDDGIVGLWDARNVA--MPV------------------------------------SLLKAHK 223 (319)
T ss_pred Cccc------ccEEEEecCCCeEEEEEccccc--chH------------------------------------HHHHHhh
Confidence 9985 7799999999999999987520 110 1237899
Q ss_pred CCEEEEEEeC-CCCEEEEEeCCCcEEEEECCC
Q 000054 2455 GSVTRISTVP-NTSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2455 ~~VtsLafSP-dG~~LaSGS~DGtIrIWDl~T 2485 (2548)
.+|+.+-|+| ++..|+++++||.+.-||..+
T Consensus 224 ~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 224 AEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9999999999 678999999999999999874
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00019 Score=84.52 Aligned_cols=198 Identities=13% Similarity=0.023 Sum_probs=130.3
Q ss_pred CCEEEEEECCCeEEEEEcCCCcee-EEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEEcCCCccccc
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKAT-ATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCTWQLEVGGRSNV 2308 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l-~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DGtVrVWDl~tgk~i~i 2308 (2548)
..+||.|+..|...+|...+.+.. ..... |...|+-+.=..+ ...+..++.|.++++.+++.+...
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~----------snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~-- 151 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDV----------SNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK-- 151 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecc----------cccchhhhhhhcccccceeeccCCcceeEEEEecCccc--
Confidence 457999999999999998865432 22211 1122221111111 234777889999999998755321
Q ss_pred ccCccceeccCCccc--E--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcce-eeeccCCCeEEEEEccCCCCCCC
Q 000054 2309 RPMESCLCFSSHAMD--V--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA-SITCHEGGARSISVFDNDLGSGS 2383 (2548)
Q Consensus 2309 ~p~~s~~t~~gH~~~--V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~-sl~gHs~~VtSLafsP~dlg~gs 2383 (2548)
+..|... + ..+++|+++.++.| +...|-.|.+.......+. .....++.-.+..|+..
T Consensus 152 --------~~~h~~~~~~ns~~~snd~~~~~~Vg---ds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~------ 214 (344)
T KOG4532|consen 152 --------FAVHNQNLTQNSLHYSNDPSWGSSVG---DSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEN------ 214 (344)
T ss_pred --------ceeeccccceeeeEEcCCCceEEEec---CCCcceEEEeCCccceeeeeEecccCCCceeeeeccC------
Confidence 1122222 1 24899999999998 6788999988753233333 23344556677888877
Q ss_pred CCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEe
Q 000054 2384 VSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTV 2463 (2548)
Q Consensus 2384 ~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafS 2463 (2548)
...+|++..||++.|||+|.+.+....... ....|.++++.+.|+
T Consensus 215 -~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss----------------------------------trp~hnGa~R~c~Fs 259 (344)
T KOG4532|consen 215 -DLQFAVVFQDGTCAIYDVRNMATPMAEISS----------------------------------TRPHHNGAFRVCRFS 259 (344)
T ss_pred -cceEEEEecCCcEEEEEecccccchhhhcc----------------------------------cCCCCCCceEEEEec
Confidence 569999999999999999875443221111 014589999999999
Q ss_pred CCC--CEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2464 PNT--SLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2464 PdG--~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
|.| .+|+-.-.-+.+.+-|++++...+.+
T Consensus 260 l~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 260 LYGLLDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred CCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence 876 45555555678999999998776655
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.5e-06 Score=100.55 Aligned_cols=176 Identities=17% Similarity=0.265 Sum_probs=120.9
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCC
Q 000054 2267 PPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGI 2344 (2548)
Q Consensus 2267 ~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DG 2344 (2548)
..+|+..|..++--.+.+-+++++.|++|++|.++.... .+....+..+++.|...|.. |-.+-+.++++ ||
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD-~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-----D~ 804 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD-EIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-----DG 804 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC-ccccceeeeEhhhccCcccceeeeeccceeeec-----cC
Confidence 345778898888777888899999999999999974321 12233345567888887764 55566777774 89
Q ss_pred eEEEEECCCCCCCcceeee--ccCCCeEEEEEccC-CCCCCCCCCEEEEE-eCCCcEEEEeCCccccCceeeeecCCCCC
Q 000054 2345 NVVVWDTLAPPTSSRASIT--CHEGGARSISVFDN-DLGSGSVSPLIVTG-GKGGDVGIHDFRYIATGKTKKHKHSDRGG 2420 (2548)
Q Consensus 2345 tVrIWDl~t~~~k~v~sl~--gHs~~VtSLafsP~-dlg~gs~g~lLVSG-S~DGtVrLWDLR~l~TGk~l~tl~~~~~~ 2420 (2548)
.|.+||.-. ++.+..+. ...+.+..+...++ + ...++.| +...+|+++|.|. +.....
T Consensus 805 giHlWDPFi--gr~Laq~~dapk~~a~~~ikcl~nv~------~~iliAgcsaeSTVKl~DaRs---ce~~~E------- 866 (1034)
T KOG4190|consen 805 GIHLWDPFI--GRLLAQMEDAPKEGAGGNIKCLENVD------RHILIAGCSAESTVKLFDARS---CEWTCE------- 866 (1034)
T ss_pred cceeecccc--cchhHhhhcCcccCCCceeEecccCc------chheeeeccchhhheeeeccc---ccceee-------
Confidence 999999864 34433221 11222333333333 1 3355554 7889999999662 222111
Q ss_pred CCccccccccCCCCCCccCCCCCceEEEcc--cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2421 SSINTCAHADAQTGSGSKPGDQNGMLWYIP--KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2421 s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~--~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
|.+- .+..+.+++++..|.|+.++.|-..|.|.+-|.++|+.+..+
T Consensus 867 --------------------------~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 867 --------------------------LKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSW 914 (1034)
T ss_pred --------------------------EEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccC
Confidence 2211 345667899999999999999999999999999999998876
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.3e-05 Score=93.39 Aligned_cols=78 Identities=17% Similarity=0.317 Sum_probs=65.5
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEE
Q 000054 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLS 2529 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaS 2529 (2548)
-||-..++.|+++||+++++|+..|..|+|=....-..+..| +-||.. -|..++.-++. |+|
T Consensus 148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf-------------clGH~e----FVS~isl~~~~~LlS 210 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF-------------CLGHKE----FVSTISLTDNYLLLS 210 (390)
T ss_pred hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh-------------ccccHh----heeeeeeccCceeee
Confidence 579999999999999999999999999999777655555444 467874 45667888888 899
Q ss_pred EECCCcEEEEECCCCc
Q 000054 2530 CGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2530 GS~DGtIrIWDL~sg~ 2545 (2548)
||+|++|++||+.+|.
T Consensus 211 ~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 211 GSGDKTLRLWDITSGK 226 (390)
T ss_pred cCCCCcEEEEecccCC
Confidence 9999999999999875
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0023 Score=78.96 Aligned_cols=265 Identities=10% Similarity=0.124 Sum_probs=164.5
Q ss_pred CCeEEEEEcCCCce-eEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC---CCcEEEEEcCCC-cccccccCccc
Q 000054 2240 NTHIYLWEFGKDKA-TATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL---DGTVCTWQLEVG-GRSNVRPMESC 2314 (2548)
Q Consensus 2240 DGsVrLWDl~tg~~-l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~---DGtVrVWDl~tg-k~i~i~p~~s~ 2314 (2548)
+.-|++|++++..- +.... ...+.+.++=|+|+|+++.|.++-. +|.|..|.++.. ..... ...
T Consensus 15 s~gI~v~~ld~~~g~l~~~~--------~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~---ln~ 83 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ--------LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTF---LNR 83 (346)
T ss_pred CCceEEEEEeCcccccchhh--------hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEE---eec
Confidence 56699999984322 11111 1123478899999999999988855 478888888742 22211 112
Q ss_pred eeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCC--cceeeeccCCC----------eEEEEEccCCCCCC
Q 000054 2315 LCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTS--SRASITCHEGG----------ARSISVFDNDLGSG 2382 (2548)
Q Consensus 2315 ~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k--~v~sl~gHs~~----------VtSLafsP~dlg~g 2382 (2548)
....++...=.+++++|++++++.+ ..|.|.++-++.. +. ....+..|.+. +.+..+.|+
T Consensus 84 ~~~~g~~p~yvsvd~~g~~vf~AnY--~~g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~----- 155 (346)
T COG2706 84 QTLPGSPPCYVSVDEDGRFVFVANY--HSGSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPD----- 155 (346)
T ss_pred cccCCCCCeEEEECCCCCEEEEEEc--cCceEEEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCC-----
Confidence 2234444322358999999999975 4699999998752 32 22233356655 888899998
Q ss_pred CCCCEEEEEe-CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC---ccCCCCCceEEEccc-------
Q 000054 2383 SVSPLIVTGG-KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG---SKPGDQNGMLWYIPK------- 2451 (2548)
Q Consensus 2383 s~g~lLVSGS-~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~---v~s~D~sv~Iwdi~~------- 2451 (2548)
+++|++.. .-..|.+|++ ..|+....- ..........+.++|+|+|++ +..-++++.+|....
T Consensus 156 --~~~l~v~DLG~Dri~~y~~---~dg~L~~~~-~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~ 229 (346)
T COG2706 156 --GRYLVVPDLGTDRIFLYDL---DDGKLTPAD-PAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEE 229 (346)
T ss_pred --CCEEEEeecCCceEEEEEc---ccCcccccc-ccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEE
Confidence 67777765 3457899994 444433221 122234455678999999998 666777887776322
Q ss_pred ---------C--CCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECCC-CcEEEEecccccccccccCcccCCCCceeecEE
Q 000054 2452 ---------A--HLGSVTRISTVPNTSLFLTGSK-DGDVKLWDAKA-AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVT 2518 (2548)
Q Consensus 2452 ---------g--H~~~VtsLafSPdG~~LaSGS~-DGtIrIWDl~T-gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vt 2518 (2548)
. -..+..+|..+|+|++|.++.. ...|.++.+.. +..+..+. .. . ..|+. -.
T Consensus 230 lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~-~~---~-----teg~~------PR 294 (346)
T COG2706 230 LQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVG-IT---P-----TEGQF------PR 294 (346)
T ss_pred eeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEE-Ee---c-----cCCcC------Cc
Confidence 1 2346678889999999998854 33788887753 22232221 00 0 01111 13
Q ss_pred EEEEcCCe--EE-EEECCCcEEEEECCCC
Q 000054 2519 DIQVVSRG--FL-SCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2519 sLafSPdG--La-SGS~DGtIrIWDL~sg 2544 (2548)
+..++++| |+ +.=.+.+|.+|..+..
T Consensus 295 ~F~i~~~g~~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 295 DFNINPSGRFLIAANQKSDNITVFERDKE 323 (346)
T ss_pred cceeCCCCCEEEEEccCCCcEEEEEEcCC
Confidence 44788888 44 4444567999888643
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00044 Score=87.31 Aligned_cols=235 Identities=14% Similarity=0.113 Sum_probs=149.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC--------
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG-------- 2293 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG-------- 2293 (2548)
+..+.++|.|.+|++....| |.+|.-..+..+..+. | ..|..+.|+|.+++|.|=+..+
T Consensus 35 ~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~-----------~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~ 101 (561)
T COG5354 35 VAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR-----------H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEI 101 (561)
T ss_pred hhheeecCcchheehhhccc-eEEccccchhheeeee-----------c-CCceecccCcccceeeeeccCCccChhhcc
Confidence 67888999999999876654 8899877665555543 2 6799999999999999865543
Q ss_pred -------cEEEEEcCCCcccccccCccceeccCCcc-cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCC--cceeee
Q 000054 2294 -------TVCTWQLEVGGRSNVRPMESCLCFSSHAM-DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTS--SRASIT 2363 (2548)
Q Consensus 2294 -------tVrVWDl~tgk~i~i~p~~s~~t~~gH~~-~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k--~v~sl~ 2363 (2548)
.+.+||+.+|..+..... . -..... .+..|+-+.+++|-. -...++|+++ ++... +.+.++
T Consensus 102 sp~~~~n~~~vwd~~sg~iv~sf~~---~-~q~~~~Wp~~k~s~~D~y~ARv----v~~sl~i~e~-t~n~~~~p~~~lr 172 (561)
T COG5354 102 SPFTSKNNVFVWDIASGMIVFSFNG---I-SQPYLGWPVLKFSIDDKYVARV----VGSSLYIHEI-TDNIEEHPFKNLR 172 (561)
T ss_pred CCccccCceeEEeccCceeEeeccc---c-CCcccccceeeeeecchhhhhh----ccCeEEEEec-CCccccCchhhcc
Confidence 489999998864322110 0 001112 255677787777654 2467999996 32111 223332
Q ss_pred ccCCCeEEEEEccCCCCCCCCCCEEEE-----EeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--
Q 000054 2364 CHEGGARSISVFDNDLGSGSVSPLIVT-----GGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-- 2436 (2548)
Q Consensus 2364 gHs~~VtSLafsP~dlg~gs~g~lLVS-----GS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-- 2436 (2548)
..++....++|.. ++..|+. ++.++.+++|.+. .++.+.+.... ....+.+-|.+.|.+
T Consensus 173 --~~gi~dFsisP~~-----n~~~la~~tPEk~~kpa~~~i~sIp---~~s~l~tk~lf----k~~~~qLkW~~~g~~ll 238 (561)
T COG5354 173 --PVGILDFSISPEG-----NHDELAYWTPEKLNKPAMVRILSIP---KNSVLVTKNLF----KVSGVQLKWQVLGKYLL 238 (561)
T ss_pred --ccceeeEEecCCC-----CCceEEEEccccCCCCcEEEEEEcc---CCCeeeeeeeE----eecccEEEEecCCceEE
Confidence 4678888888872 2455553 5688999999964 33433332100 111233444555554
Q ss_pred -----------ccCCCCCceEEEcc-------cCCCCCEEEEEEeCCCCEEEEEe--CCCcEEEEECCCCcEEEEec
Q 000054 2437 -----------SKPGDQNGMLWYIP-------KAHLGSVTRISTVPNTSLFLTGS--KDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2437 -----------v~s~D~sv~Iwdi~-------~gH~~~VtsLafSPdG~~LaSGS--~DGtIrIWDl~Tgell~tL~ 2493 (2548)
...+..+++++++. .+-.++|...+|.|.++.+++.+ .+..+.++|++.+ ++..++
T Consensus 239 ~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P 314 (561)
T COG5354 239 VLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP 314 (561)
T ss_pred EEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEecC
Confidence 11223455666642 24578999999999988776655 5889999999865 666554
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0001 Score=93.49 Aligned_cols=199 Identities=17% Similarity=0.231 Sum_probs=135.3
Q ss_pred EEEEEcC-CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2223 RAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2223 ~~VsfSP-dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+.+|. .-.+++.| ....|+-++++.|+.+..|.. ..+.+++|..++...+|++|+.||.|..||.+
T Consensus 137 RDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~----------~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR 205 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFET----------DSGELNVVSINEEHGLLACGTEDGVVEFWDPR 205 (703)
T ss_pred ccccccCCCccEEEee-cCcceEEEEcccccccccccc----------ccccceeeeecCccceEEecccCceEEEecch
Confidence 3444443 33444444 445688889999988877754 22789999999999999999999999999998
Q ss_pred CCcccccccCccceeccCCcc-----cEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcce-eeeccCCCeEEEE
Q 000054 2302 VGGRSNVRPMESCLCFSSHAM-----DVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA-SITCHEGGARSIS 2373 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~-----~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~-sl~gHs~~VtSLa 2373 (2548)
+......... ......|.. .|++ |+.+|-.+++|. .+|.|.|||+++ .+++. .-.+..-+|..+.
T Consensus 206 ~ksrv~~l~~--~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt---s~G~v~iyDLRa--~~pl~~kdh~~e~pi~~l~ 278 (703)
T KOG2321|consen 206 DKSRVGTLDA--ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT---STGSVLIYDLRA--SKPLLVKDHGYELPIKKLD 278 (703)
T ss_pred hhhhheeeec--ccccCCCccccccCcceEEEecCCceeEEeec---cCCcEEEEEccc--CCceeecccCCccceeeec
Confidence 6643322111 111222222 3554 777788888875 899999999997 34432 2223345788899
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCC
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAH 2453 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH 2453 (2548)
|.+.+ ..+.++| .....++||| -.+|+..... ..
T Consensus 279 ~~~~~-----~q~~v~S-~Dk~~~kiWd---~~~Gk~~asi-------------------------------------Ep 312 (703)
T KOG2321|consen 279 WQDTD-----QQNKVVS-MDKRILKIWD---ECTGKPMASI-------------------------------------EP 312 (703)
T ss_pred ccccC-----CCceEEe-cchHHhhhcc---cccCCceeec-------------------------------------cc
Confidence 87774 1335555 4467899999 6666665443 12
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 000054 2454 LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2454 ~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~T 2485 (2548)
...+..+++-|++.++++|-.++.+..|=+..
T Consensus 313 t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 313 TSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred cCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 34578889999999999999888887776554
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00043 Score=87.66 Aligned_cols=264 Identities=13% Similarity=0.158 Sum_probs=161.1
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC---------
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD--------- 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D--------- 2292 (2548)
-+-+.|||.|.||+|--..| |.+|--.+-..++.| .| ..|.-+.|||..++|+|=+..
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF-----------~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~ 279 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF-----------YH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDN 279 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc-----------cC-CCceeeecCCccceEEEecCCccccCcccC
Confidence 46789999999999988877 778975544333333 24 569999999999999986542
Q ss_pred --CcEEEEEcCCCcccccccCccceeccC--CcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCC
Q 000054 2293 --GTVCTWQLEVGGRSNVRPMESCLCFSS--HAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGG 2368 (2548)
Q Consensus 2293 --GtVrVWDl~tgk~i~i~p~~s~~t~~g--H~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~ 2368 (2548)
..++|||+.+|...... .++.+ ..-++..||.|++++|--+ ...|.|++... ...+..-.-.-.+
T Consensus 280 e~~~l~IWDI~tG~lkrsF-----~~~~~~~~~WP~frWS~DdKy~Arm~----~~sisIyEtps--f~lld~Kslki~g 348 (698)
T KOG2314|consen 280 EGQQLIIWDIATGLLKRSF-----PVIKSPYLKWPIFRWSHDDKYFARMT----GNSISIYETPS--FMLLDKKSLKISG 348 (698)
T ss_pred CCceEEEEEccccchhcce-----eccCCCccccceEEeccCCceeEEec----cceEEEEecCc--eeeecccccCCcc
Confidence 48999999999643221 11111 1124445899999999864 57899998743 2222111123467
Q ss_pred eEEEEEccCCCCCCCCCCEEEEEe--C---CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCcc-----
Q 000054 2369 ARSISVFDNDLGSGSVSPLIVTGG--K---GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSK----- 2438 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVSGS--~---DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~----- 2438 (2548)
|....|+|. +++|+-=. . -..+.+-. +.+++.+++.+... ...+.+.|..+|.+++
T Consensus 349 Ir~FswsP~-------~~llAYwtpe~~~~parvtL~e---vPs~~~iRt~nlfn----VsDckLhWQk~gdyLcvkvdR 414 (698)
T KOG2314|consen 349 IRDFSWSPT-------SNLLAYWTPETNNIPARVTLME---VPSKREIRTKNLFN----VSDCKLHWQKSGDYLCVKVDR 414 (698)
T ss_pred ccCcccCCC-------cceEEEEcccccCCcceEEEEe---cCccceeeecccee----eeccEEEeccCCcEEEEEEEe
Confidence 888899988 45655322 1 12344444 44455554431111 1224455666666521
Q ss_pred -------CCCCCceEEEccc--------CCCCCEEEEEEeCCCCEEEEEeC---CCcEEEEECCC----CcEEEEecccc
Q 000054 2439 -------PGDQNGMLWYIPK--------AHLGSVTRISTVPNTSLFLTGSK---DGDVKLWDAKA----AQLVYHWSKLH 2496 (2548)
Q Consensus 2439 -------s~D~sv~Iwdi~~--------gH~~~VtsLafSPdG~~LaSGS~---DGtIrIWDl~T----gell~tL~~~H 2496 (2548)
+.-.+..|+.+.. .-...|...+|.|.|.-+++-+. ..++.+|.+.+ -+++.+++
T Consensus 415 ~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--- 491 (698)
T KOG2314|consen 415 HTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--- 491 (698)
T ss_pred eccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc---
Confidence 1112234444322 23557888999999988877654 45788888773 22333332
Q ss_pred cccccccCcccCCCCceeecEEEEEEcCCe--EE---EEECCCcEEEEECCC
Q 000054 2497 ERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FL---SCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2497 s~hsfl~~tl~GH~~~V~a~VtsLafSPdG--La---SGS~DGtIrIWDL~s 2543 (2548)
+-| .+.+-|+|.| ++ -+|..|.+.++|++.
T Consensus 492 ----------k~~-------~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 492 ----------KKF-------ANTVFWSPKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred ----------ccc-------cceEEEcCCCcEEEEEEecccccceEEEecch
Confidence 111 3456899999 32 335689999999873
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0016 Score=82.36 Aligned_cols=243 Identities=8% Similarity=-0.073 Sum_probs=136.3
Q ss_pred EcCCCCEEEEEE----------CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe-C-CCc
Q 000054 2227 SHPLRPFFLVGS----------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-L-DGT 2294 (2548)
Q Consensus 2227 fSPdG~~LASGS----------~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS-~-DGt 2294 (2548)
.+|||+.+.++. .+..|.+||..+++.+..+..-+. +.......-..++++|||+++++.. . +..
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~---p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~ 129 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG---PRFLVGTYPWMTSLTPDNKTLLFYQFSPSPA 129 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC---chhhccCccceEEECCCCCEEEEecCCCCCE
Confidence 679998877654 588999999999999888754211 1111123455789999999999876 3 689
Q ss_pred EEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCc-ce---eeeccCCCeE
Q 000054 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS-RA---SITCHEGGAR 2370 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~-v~---sl~gHs~~Vt 2370 (2548)
|.+.|+.+++.+...+. +-...+...+.+... +-+ .||......+... ++. .. .+.+....+.
T Consensus 130 V~VvD~~~~kvv~ei~v-------p~~~~vy~t~e~~~~-~~~----~Dg~~~~v~~d~~-g~~~~~~~~vf~~~~~~v~ 196 (352)
T TIGR02658 130 VGVVDLEGKAFVRMMDV-------PDCYHIFPTANDTFF-MHC----RDGSLAKVGYGTK-GNPKIKPTEVFHPEDEYLI 196 (352)
T ss_pred EEEEECCCCcEEEEEeC-------CCCcEEEEecCCccE-EEe----ecCceEEEEecCC-CceEEeeeeeecCCccccc
Confidence 99999998875442221 111112212222222 222 1333333222211 110 11 1111000000
Q ss_pred E-EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCc--cccCceeeeecCC---CCCCCccccccccCCCCCC--ccC---
Q 000054 2371 S-ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRY--IATGKTKKHKHSD---RGGSSINTCAHADAQTGSG--SKP--- 2439 (2548)
Q Consensus 2371 S-LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~--l~TGk~l~tl~~~---~~~s~~~~~~vafSpdGk~--v~s--- 2439 (2548)
. -.|.+.+ +.++..... |+|.+.|+.. ....+....+... ..........++++++|+. +..
T Consensus 197 ~rP~~~~~d------g~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~ 269 (352)
T TIGR02658 197 NHPAYSNKS------GRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQR 269 (352)
T ss_pred cCCceEcCC------CcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCC
Confidence 0 0334532 566666555 9999999532 1111222221111 1222333344889999887 311
Q ss_pred -------CCCCceEEEcccC-------CCCCEEEEEEeCCCC-EEEEEe-CCCcEEEEECCCCcEEEEe
Q 000054 2440 -------GDQNGMLWYIPKA-------HLGSVTRISTVPNTS-LFLTGS-KDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2440 -------~D~sv~Iwdi~~g-------H~~~VtsLafSPdG~-~LaSGS-~DGtIrIWDl~Tgell~tL 2492 (2548)
..+.+.++|..+. -...+..++++||++ +|++.. .++.|.+.|..+++.+.++
T Consensus 270 ~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 270 AKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 1134556664321 234788999999999 888776 5889999999999999877
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0011 Score=94.97 Aligned_cols=230 Identities=12% Similarity=0.087 Sum_probs=133.4
Q ss_pred EEEEEcCCCCEEEEE-ECCCeEEEEEcCCCceeEEEecc--CCCCCCCC-----CCCCCeEEEEEcc-CCCEEEEEeCCC
Q 000054 2223 RAFSSHPLRPFFLVG-SSNTHIYLWEFGKDKATATYGVL--PAANVPPP-----YALASISALQFDH-YGHRFASAALDG 2293 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASG-S~DGsVrLWDl~tg~~l~t~~~l--~ghs~~~~-----~H~~~VtsVaFSP-dG~~LaSGS~DG 2293 (2548)
..+++++++..|.++ ..++.|+++|..++. +.++... .+...... .....-..++|+| ++..+++.+.++
T Consensus 627 ~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~ 705 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH 705 (1057)
T ss_pred cEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC
Confidence 566777888765544 456789999987764 3343221 00000000 0012346899999 566667777889
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcc--------cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcce-----
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAM--------DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA----- 2360 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~--------~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~----- 2360 (2548)
.|++||..++...............++.. .-.+++|+|+.++++. +.++.|++||+.+.....+.
T Consensus 706 ~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVAD--s~n~~Irv~D~~tg~~~~~~gg~~~ 783 (1057)
T PLN02919 706 QIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIAD--SESSSIRALDLKTGGSRLLAGGDPT 783 (1057)
T ss_pred eEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEE--CCCCeEEEEECCCCcEEEEEecccc
Confidence 99999987664221110000000111110 1134789998666665 47899999998752111000
Q ss_pred ------eeecc--------CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000054 2361 ------SITCH--------EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2361 ------sl~gH--------s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
.+-.+ -.....+++.++ +.++++-+.++.|++|| ..++...... ..+.
T Consensus 784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~d-------G~LYVADs~N~rIrviD---~~tg~v~tia-G~G~------- 845 (1057)
T PLN02919 784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKD-------GQIYVADSYNHKIKKLD---PATKRVTTLA-GTGK------- 845 (1057)
T ss_pred cCcccccccCCCCchhhhhccCCceeeEeCC-------CcEEEEECCCCEEEEEE---CCCCeEEEEe-ccCC-------
Confidence 00000 112356777776 67888889999999999 4444443222 0000
Q ss_pred ccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcE
Q 000054 2427 AHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQL 2488 (2548)
Q Consensus 2427 ~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgel 2488 (2548)
.-..+|.. ..++-.....|+++++|+++++-+.++.|++||+.+++.
T Consensus 846 --~G~~dG~~-------------~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 846 --AGFKDGKA-------------LKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred --cCCCCCcc-------------cccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 00001110 123344667999999999999988999999999998875
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=7.4e-05 Score=92.16 Aligned_cols=168 Identities=17% Similarity=0.222 Sum_probs=111.9
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCC
Q 000054 2274 ISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLA 2353 (2548)
Q Consensus 2274 VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t 2353 (2548)
...+..++.++++|++..++...+++.....+. .......+.......+.+...+...+++-... +...+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~--~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkag-D~~~~di~s~~~ 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKG--AKLLDVSCVPKRPTAISFIREDTSVLVADKAG-DVYSFDILSADS 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCc--ceeeeEeecccCcceeeeeeccceEEEEeecC-Cceeeeeecccc
Confidence 444556677888888888888777777644320 11111223333344444444343333332211 556666666543
Q ss_pred CCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCC
Q 000054 2354 PPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQT 2433 (2548)
Q Consensus 2354 ~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpd 2433 (2548)
.+...+-||-+-++.|+++|+ ++.|+++..|..|++-.... --.+..+
T Consensus 142 ---~~~~~~lGhvSml~dVavS~D-------~~~IitaDRDEkIRvs~ypa---~f~Iesf------------------- 189 (390)
T KOG3914|consen 142 ---GRCEPILGHVSMLLDVAVSPD-------DQFIITADRDEKIRVSRYPA---TFVIESF------------------- 189 (390)
T ss_pred ---cCcchhhhhhhhhheeeecCC-------CCEEEEecCCceEEEEecCc---ccchhhh-------------------
Confidence 344556699999999999999 68999999999999977431 1111111
Q ss_pred CCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000054 2434 GSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2434 Gk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
..||+.-|..++.-++ ..|++||.|++|++||+.+|+.+.++.
T Consensus 190 ----------------clGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 190 ----------------CLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ----------------ccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcccccc
Confidence 2689999999998764 558999999999999999999998774
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0038 Score=79.20 Aligned_cols=224 Identities=12% Similarity=0.145 Sum_probs=133.4
Q ss_pred EEEEEEcCCCCEEEEEE-CCCeEEEEEcCC-CceeEEEecc--CCCC-CCCCCCCCCeEEEEEccCCCEEEEEeC-CCcE
Q 000054 2222 TRAFSSHPLRPFFLVGS-SNTHIYLWEFGK-DKATATYGVL--PAAN-VPPPYALASISALQFDHYGHRFASAAL-DGTV 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS-~DGsVrLWDl~t-g~~l~t~~~l--~ghs-~~~~~H~~~VtsVaFSPdG~~LaSGS~-DGtV 2295 (2548)
.+.++.+|++++|+++. .+|+|.++++.. |......... .+.. .+.........++.|+|+|+++++... ...|
T Consensus 89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v 168 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRV 168 (345)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEE
T ss_pred cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEE
Confidence 46788889999999886 589999999986 4433332111 1100 001112355789999999998888754 3489
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCC--cceeeec----c--CC
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTS--SRASITC----H--EG 2367 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k--~v~sl~g----H--s~ 2367 (2548)
.+|+++..... ..+........+..-+=..|+|+++++.+.. -.++.|.++++....+. .+..+.. . ..
T Consensus 169 ~~~~~~~~~~~-l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~--e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~ 245 (345)
T PF10282_consen 169 YVYDIDDDTGK-LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN--ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN 245 (345)
T ss_dssp EEEEE-TTS-T-EEEEEEEECSTTSSEEEEEE-TTSSEEEEEE--TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS
T ss_pred EEEEEeCCCce-EEEeeccccccCCCCcEEEEcCCcCEEEEec--CCCCcEEEEeecccCCceeEEEEeeeccccccccC
Confidence 99999765411 1111111112222223345999999888876 37889999998732232 2222221 1 12
Q ss_pred CeEEEEEccCCCCCCCCCCEEE-EEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceE
Q 000054 2368 GARSISVFDNDLGSGSVSPLIV-TGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGML 2446 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLV-SGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~I 2446 (2548)
....|.++|+ +++|. +...+++|.+|++. ..+|+....
T Consensus 246 ~~~~i~ispd-------g~~lyvsnr~~~sI~vf~~d-~~~g~l~~~--------------------------------- 284 (345)
T PF10282_consen 246 APAEIAISPD-------GRFLYVSNRGSNSISVFDLD-PATGTLTLV--------------------------------- 284 (345)
T ss_dssp SEEEEEE-TT-------SSEEEEEECTTTEEEEEEEC-TTTTTEEEE---------------------------------
T ss_pred CceeEEEecC-------CCEEEEEeccCCEEEEEEEe-cCCCceEEE---------------------------------
Confidence 5788999998 56555 45567889999963 122332111
Q ss_pred EEcccCCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEEC--CCCcEEE
Q 000054 2447 WYIPKAHLGSVTRISTVPNTSLFLTGSK-DGDVKLWDA--KAAQLVY 2490 (2548)
Q Consensus 2447 wdi~~gH~~~VtsLafSPdG~~LaSGS~-DGtIrIWDl--~Tgell~ 2490 (2548)
.........-+.++++|+|++|+++.. ++.|.+|++ .+|.+..
T Consensus 285 -~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 285 -QTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTP 330 (345)
T ss_dssp -EEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred -EEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence 111112334689999999999998875 678999866 5777654
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0033 Score=88.65 Aligned_cols=296 Identities=13% Similarity=0.070 Sum_probs=172.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEE----EcCCC--ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLW----EFGKD--KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTV 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLW----Dl~tg--~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtV 2295 (2548)
+.++.|-++..-++.+..+|.|.+. +..+. +.+..+ ...|.+++||||+..++.+..+|+|
T Consensus 78 ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v-------------d~GI~a~~WSPD~Ella~vT~~~~l 144 (928)
T PF04762_consen 78 IVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV-------------DSGILAASWSPDEELLALVTGEGNL 144 (928)
T ss_pred EEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE-------------cCcEEEEEECCCcCEEEEEeCCCEE
Confidence 6899999999999999999999999 44332 223333 2689999999999999999999988
Q ss_pred EEEEcC---------------C--------Cccccc--------------ccCcc---ceeccCCcccE-EEEcCCCCEE
Q 000054 2296 CTWQLE---------------V--------GGRSNV--------------RPMES---CLCFSSHAMDV-SYITSSGSVI 2334 (2548)
Q Consensus 2296 rVWDl~---------------t--------gk~i~i--------------~p~~s---~~t~~gH~~~V-~afSpdGslL 2334 (2548)
.+-+-. . |++... .|... .....-....+ .+|..||.++
T Consensus 145 ~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yF 224 (928)
T PF04762_consen 145 LLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYF 224 (928)
T ss_pred EEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEE
Confidence 765321 0 110000 00000 00011111222 2588899999
Q ss_pred EEEeccC-C--CCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeC---CCcEEEEeCCccccC
Q 000054 2335 AAAGHSS-N--GINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGK---GGDVGIHDFRYIATG 2408 (2548)
Q Consensus 2335 ATgG~SS-~--DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~---DGtVrLWDLR~l~TG 2408 (2548)
|+..... . -+.++||+-. +....+-..-.+--.+++|-|. |++|++.-. ...|.+|.- .|
T Consensus 225 AVss~~~~~~~~R~iRVy~Re---G~L~stSE~v~gLe~~l~WrPs-------G~lIA~~q~~~~~~~VvFfEr----NG 290 (928)
T PF04762_consen 225 AVSSVEPETGSRRVIRVYSRE---GELQSTSEPVDGLEGALSWRPS-------GNLIASSQRLPDRHDVVFFER----NG 290 (928)
T ss_pred EEEEEEcCCCceeEEEEECCC---ceEEeccccCCCccCCccCCCC-------CCEEEEEEEcCCCcEEEEEec----CC
Confidence 9875311 2 3689999975 2222222222233356889888 788888764 456777762 23
Q ss_pred ceeeeecCCCCCCCccccccccCCCCCCcc-CCCCCceEEEcccC-----------CCCCEEEEEEeCC-CCEEEEEeCC
Q 000054 2409 KTKKHKHSDRGGSSINTCAHADAQTGSGSK-PGDQNGMLWYIPKA-----------HLGSVTRISTVPN-TSLFLTGSKD 2475 (2548)
Q Consensus 2409 k~l~tl~~~~~~s~~~~~~vafSpdGk~v~-s~D~sv~Iwdi~~g-----------H~~~VtsLafSPd-G~~LaSGS~D 2475 (2548)
-....+.............+.|++|+..++ .....+.+|..-.- ....+..+.|+|. ...|..++.+
T Consensus 291 LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~ 370 (928)
T PF04762_consen 291 LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSN 370 (928)
T ss_pred cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecC
Confidence 333333222222333446789999999832 22345888864322 2334556999995 4557777776
Q ss_pred CcEEEEE----CCCC--------cEEEEecccccccc-----cccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcE
Q 000054 2476 GDVKLWD----AKAA--------QLVYHWSKLHERHT-----FLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSV 2536 (2548)
Q Consensus 2476 GtIrIWD----l~Tg--------ell~tL~~~Hs~hs-----fl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtI 2536 (2548)
|.+..++ +..+ ..+..+.+..-.-+ ..-|-+..+.=...+.|.+++|++++ +++-..||+|
T Consensus 371 g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l 450 (928)
T PF04762_consen 371 GQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSL 450 (928)
T ss_pred CcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCE
Confidence 7776543 3222 12333322111100 00111111111223457889999998 9999999999
Q ss_pred EEEECCCC
Q 000054 2537 KLIQLEDY 2544 (2548)
Q Consensus 2537 rIWDL~sg 2544 (2548)
.+|+.+.+
T Consensus 451 ~~~~~~~~ 458 (928)
T PF04762_consen 451 SIYEWDLK 458 (928)
T ss_pred EEEEecCC
Confidence 99996543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00078 Score=86.67 Aligned_cols=236 Identities=11% Similarity=0.054 Sum_probs=142.8
Q ss_pred CCeEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCC-----CCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000054 2218 ENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAA-----NVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2218 ~gV~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~gh-----s~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
+++...|++|+....|+|.|+.||.+++-.+.+...-...+++... +....+|.+.|.-+.|+.+...|-|.+.+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 4556799999999999999999999999998865433222221111 11356788999999999999999999999
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcc-cEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcc--eeeeccCC
Q 000054 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAM-DVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR--ASITCHEG 2367 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~-~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v--~sl~gHs~ 2367 (2548)
|.|.+|-+-.|+-.. ...+.... -|. +|+.+|..|+.+- .||.|.+=.+.. ..+ ..+++ .
T Consensus 93 GlIiVWmlykgsW~E-------EMiNnRnKSvV~SmsWn~dG~kIcIvY---eDGavIVGsvdG---NRIwgKeLkg--~ 157 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCE-------EMINNRNKSVVVSMSWNLDGTKICIVY---EDGAVIVGSVDG---NRIWGKELKG--Q 157 (1189)
T ss_pred ceEEEEeeecccHHH-------HHhhCcCccEEEEEEEcCCCcEEEEEE---ccCCEEEEeecc---ceecchhcch--h
Confidence 999999987664211 01222222 232 4888999888875 788887766542 111 11221 2
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCc-----cccCceeeee---cC---CCCCCCcc-c-cccccCCCC
Q 000054 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRY-----IATGKTKKHK---HS---DRGGSSIN-T-CAHADAQTG 2434 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~-----l~TGk~l~tl---~~---~~~~s~~~-~-~~vafSpdG 2434 (2548)
-...+.|+++ ..++..+-.+|.+.++|... +.. .+.... .+ ........ . +.....||.
T Consensus 158 ~l~hv~ws~D-------~~~~Lf~~ange~hlydnqgnF~~Kl~~-~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr 229 (1189)
T KOG2041|consen 158 LLAHVLWSED-------LEQALFKKANGETHLYDNQGNFERKLEK-DCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR 229 (1189)
T ss_pred eccceeeccc-------HHHHHhhhcCCcEEEecccccHHHhhhh-ceEEeeeeeecCCCccccceeeccCccccCCCCC
Confidence 2346788888 45666777789999999521 000 110000 00 00000000 0 111122233
Q ss_pred CC--ccCCCCCceEEEcccC-------CCCCEEEEEEeCCCCEEEEEeCCC
Q 000054 2435 SG--SKPGDQNGMLWYIPKA-------HLGSVTRISTVPNTSLFLTGSKDG 2476 (2548)
Q Consensus 2435 k~--v~s~D~sv~Iwdi~~g-------H~~~VtsLafSPdG~~LaSGS~DG 2476 (2548)
.. ++..+|...|.+.... -.-.|....|+++|..|+.+|.|.
T Consensus 230 P~lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 230 PRLAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred CEEEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcc
Confidence 22 4445555555442221 123567889999999999998753
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0039 Score=79.71 Aligned_cols=255 Identities=12% Similarity=0.063 Sum_probs=138.9
Q ss_pred CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccc
Q 000054 2230 LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVR 2309 (2548)
Q Consensus 2230 dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~ 2309 (2548)
++..++.++.+|.+..+|..+|+.+-.... . +.+.+.-.. .+..++.++.||.|..||.++|+..-..
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~-~----------~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 171 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKL-S----------SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTY 171 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeecc-C----------ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEE
Confidence 466788889999999999999988766432 1 112111001 3556788888999999999988643221
Q ss_pred cCcc-ceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc-CC---C---eEEEEEccCCCCC
Q 000054 2310 PMES-CLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH-EG---G---ARSISVFDNDLGS 2381 (2548)
Q Consensus 2310 p~~s-~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH-s~---~---VtSLafsP~dlg~ 2381 (2548)
.... ..........+. .++ .++.+. .++.+..+|.++ ++.+...... .. . ...+.-.|.
T Consensus 172 ~~~~~~~~~~~~~sp~~---~~~-~v~~~~---~~g~v~ald~~t--G~~~W~~~~~~~~g~~~~~~~~~~~~~p~---- 238 (377)
T TIGR03300 172 SRVTPALTLRGSASPVI---ADG-GVLVGF---AGGKLVALDLQT--GQPLWEQRVALPKGRTELERLVDVDGDPV---- 238 (377)
T ss_pred ccCCCceeecCCCCCEE---ECC-EEEEEC---CCCEEEEEEccC--CCEeeeeccccCCCCCchhhhhccCCccE----
Confidence 1100 000111111111 133 455543 678899999876 3332221100 00 0 000000110
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEEcccCC-------
Q 000054 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWYIPKAH------- 2453 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwdi~~gH------- 2453 (2548)
..+..+..++.+|.+..+| ..+|+.+-..... . ....... ++.. +...++.+..++...+.
T Consensus 239 -~~~~~vy~~~~~g~l~a~d---~~tG~~~W~~~~~-~-----~~~p~~~-~~~vyv~~~~G~l~~~d~~tG~~~W~~~~ 307 (377)
T TIGR03300 239 -VDGGQVYAVSYQGRVAALD---LRSGRVLWKRDAS-S-----YQGPAVD-DNRLYVTDADGVVVALDRRSGSELWKNDE 307 (377)
T ss_pred -EECCEEEEEEcCCEEEEEE---CCCCcEEEeeccC-C-----ccCceEe-CCEEEEECCCCeEEEEECCCCcEEEcccc
Confidence 0134788888899999999 5677766544210 0 1111111 2222 44455555555543221
Q ss_pred --CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEE
Q 000054 2454 --LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCG 2531 (2548)
Q Consensus 2454 --~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS 2531 (2548)
.....+... .+..+++++.||.|.++|..+|+.+.+++ -++..+.+ ...+..+.|+.++
T Consensus 308 ~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~--------------~~~~~~~~---sp~~~~~~l~v~~ 368 (377)
T TIGR03300 308 LKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLK--------------TDGSGIAS---PPVVVGDGLLVQT 368 (377)
T ss_pred ccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE--------------cCCCcccc---CCEEECCEEEEEe
Confidence 111111111 46788999999999999999999998773 11111111 1134445588999
Q ss_pred CCCcEEEE
Q 000054 2532 GDGSVKLI 2539 (2548)
Q Consensus 2532 ~DGtIrIW 2539 (2548)
.||.|..+
T Consensus 369 ~dG~l~~~ 376 (377)
T TIGR03300 369 RDGDLYAF 376 (377)
T ss_pred CCceEEEe
Confidence 99999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0054 Score=74.00 Aligned_cols=228 Identities=13% Similarity=0.137 Sum_probs=125.7
Q ss_pred EEcCCCCEEEEEECCCeEEEEEcCCC--ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 000054 2226 SSHPLRPFFLVGSSNTHIYLWEFGKD--KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVG 2303 (2548)
Q Consensus 2226 sfSPdG~~LASGS~DGsVrLWDl~tg--~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tg 2303 (2548)
+.+.+|+.||. -+|..|-|-...+. ..+......... ...=+.++|+||+..||.+...|+|+++|+...
T Consensus 4 ~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~-------~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~ 75 (282)
T PF15492_consen 4 ALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDP-------NPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGS 75 (282)
T ss_pred eecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCC-------CchheEEEECCCCcEEEEEcCCCeEEEEecccc
Confidence 34578887775 45666766655432 223333321111 134678999999999999999999999999754
Q ss_pred cccccccCccceeccCC-cccEE---EEcC------CCCEEEEEeccCCCCeEEEEECCCC---CCCcceeee---ccCC
Q 000054 2304 GRSNVRPMESCLCFSSH-AMDVS---YITS------SGSVIAAAGHSSNGINVVVWDTLAP---PTSSRASIT---CHEG 2367 (2548)
Q Consensus 2304 k~i~i~p~~s~~t~~gH-~~~V~---afSp------dGslLATgG~SS~DGtVrIWDl~t~---~~k~v~sl~---gHs~ 2367 (2548)
..-.+.|.. .+.+- ...|. +... .-.+++.. .+|.++=|-+... ..+.-+.+. .+..
T Consensus 76 ~lf~I~p~~---~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~----Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~ 148 (282)
T PF15492_consen 76 ELFVIPPAM---SFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN----YRGQLRSYLVSVGTNQGYQENHSFSFSSHYPH 148 (282)
T ss_pred eeEEcCccc---ccCCccccceeeeEeeccccccccceeEEEEe----ccceeeeEEEEcccCCcceeeEEEEecccCCC
Confidence 332222211 11111 12222 1111 12344443 5677776664321 122233333 2467
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeC-CCc----------EEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC
Q 000054 2368 GARSISVFDNDLGSGSVSPLIVTGGK-GGD----------VGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG 2436 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~-DGt----------VrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~ 2436 (2548)
+|.++.|+|.+ ++|+.||. ... +.-|.+ -.+... ...+.-..++.
T Consensus 149 Gi~~~vy~p~h-------~LLlVgG~~~~~~~~s~a~~~GLtaWRi---L~~~Py-------------yk~v~~~~~~~- 204 (282)
T PF15492_consen 149 GINSAVYHPKH-------RLLLVGGCEQNQDGMSKASSCGLTAWRI---LSDSPY-------------YKQVTSSEDDI- 204 (282)
T ss_pred ceeEEEEcCCC-------CEEEEeccCCCCCccccccccCceEEEE---cCCCCc-------------EEEccccCccc-
Confidence 99999999994 56666553 221 223331 111110 00001011111
Q ss_pred ccCCCCCceEEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000054 2437 SKPGDQNGMLWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2437 v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
.....+..++++ .......|..|..+|||..||+...+|.|.+|++.+-++...++
T Consensus 205 -~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 205 -TASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred -cccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 000001112221 12346789999999999999999999999999999888877763
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0027 Score=81.14 Aligned_cols=260 Identities=11% Similarity=0.021 Sum_probs=143.7
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccccccc
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRP 2310 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p 2310 (2548)
+..+++++.+|.|.-+|..+|+.+-.+..... ... ... .++..++.++.||.+..+|.++|+..-...
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~-------~~~---~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 132 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDER-------LSG---GVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAK 132 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCC-------ccc---ceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeec
Confidence 56788889999999999999988766543110 001 111 246778899999999999999886432211
Q ss_pred CccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE--EccCCCCCCCCCC
Q 000054 2311 MESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS--VFDNDLGSGSVSP 2386 (2548)
Q Consensus 2311 ~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa--fsP~dlg~gs~g~ 2386 (2548)
.. ..+.+ .- .+..++.+. .++.+..||..+ ++.+-.+........ +. -+|. ..+.
T Consensus 133 ------~~---~~~~~~p~v-~~~~v~v~~---~~g~l~a~d~~t--G~~~W~~~~~~~~~~-~~~~~sp~-----~~~~ 191 (377)
T TIGR03300 133 ------LS---SEVLSPPLV-ANGLVVVRT---NDGRLTALDAAT--GERLWTYSRVTPALT-LRGSASPV-----IADG 191 (377)
T ss_pred ------cC---ceeecCCEE-ECCEEEEEC---CCCeEEEEEcCC--CceeeEEccCCCcee-ecCCCCCE-----EECC
Confidence 11 11111 11 233445443 689999999876 444443332221111 10 0010 0023
Q ss_pred EEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCc-------cccccccCCCCCC-ccCCCCCceEEEcccCCCC---
Q 000054 2387 LIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSI-------NTCAHADAQTGSG-SKPGDQNGMLWYIPKAHLG--- 2455 (2548)
Q Consensus 2387 lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~-------~~~~vafSpdGk~-v~s~D~sv~Iwdi~~gH~~--- 2455 (2548)
.++.+..+|.+..+| ..+|+.+-........... ......+. ++.. +...++.++.++...+...
T Consensus 192 ~v~~~~~~g~v~ald---~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~-~~~vy~~~~~g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 192 GVLVGFAGGKLVALD---LQTGQPLWEQRVALPKGRTELERLVDVDGDPVVD-GGQVYAVSYQGRVAALDLRSGRVLWKR 267 (377)
T ss_pred EEEEECCCCEEEEEE---ccCCCEeeeeccccCCCCCchhhhhccCCccEEE-CCEEEEEEcCCEEEEEECCCCcEEEee
Confidence 678888899999999 5567665432111000000 00000111 2222 4444555666665333211
Q ss_pred ---CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEEC
Q 000054 2456 ---SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGG 2532 (2548)
Q Consensus 2456 ---~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS~ 2532 (2548)
..... ...+..++.++.||.|..+|..+|+.+...+. +.+. ..... ....+.+++++.
T Consensus 268 ~~~~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~-----------~~~~--~~ssp----~i~g~~l~~~~~ 328 (377)
T TIGR03300 268 DASSYQGP--AVDDNRLYVTDADGVVVALDRRSGSELWKNDE-----------LKYR--QLTAP----AVVGGYLVVGDF 328 (377)
T ss_pred ccCCccCc--eEeCCEEEEECCCCeEEEEECCCCcEEEcccc-----------ccCC--ccccC----EEECCEEEEEeC
Confidence 11111 12467788888999999999999988764410 0110 01011 222233888999
Q ss_pred CCcEEEEECCCCcc
Q 000054 2533 DGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2533 DGtIrIWDL~sg~l 2546 (2548)
||.|.++|..++..
T Consensus 329 ~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 329 EGYLHWLSREDGSF 342 (377)
T ss_pred CCEEEEEECCCCCE
Confidence 99999999987754
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.77 E-value=9e-05 Score=92.24 Aligned_cols=213 Identities=16% Similarity=0.203 Sum_probs=132.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCC-CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~t-g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
+++++--.+.+-+++++.|.+|++|.+.. |..+.+-.+ ...+..|..+|.++.|-.+.++++++ ||-|.+||.
T Consensus 738 iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaC----QfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDP 811 (1034)
T KOG4190|consen 738 IRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSAC----QFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDP 811 (1034)
T ss_pred hHHHHhcccccceeeccCCceEEEEEeccccCcccccee----eeEhhhccCcccceeeeeccceeeec--cCcceeecc
Confidence 34444334667899999999999999873 222221000 01344577999999999888887765 899999998
Q ss_pred CCCcccccccCccceeccCCcccEEEEcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceee---eccCCCeEEEEEcc
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI---TCHEGGARSISVFD 2376 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~afSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl---~gHs~~VtSLafsP 2376 (2548)
-.+.....- ......+....|.++.. +..++.. |+ +...+|+++|.+.....+.... .+..+.+.++++.+
T Consensus 812 Figr~Laq~---~dapk~~a~~~ikcl~nv~~~iliA-gc-saeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 812 FIGRLLAQM---EDAPKEGAGGNIKCLENVDRHILIA-GC-SAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred cccchhHhh---hcCcccCCCceeEecccCcchheee-ec-cchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 665432210 00111223334555543 4444444 43 3889999999987433332222 24456789999988
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCC
Q 000054 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGS 2456 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~ 2456 (2548)
. |+.++.|-.+|.|.+.|.| +|+.+... ...+-.
T Consensus 887 ~-------GN~lAa~LSnGci~~LDaR---~G~vINsw------------------------------------rpmecd 920 (1034)
T KOG4190|consen 887 K-------GNKLAAALSNGCIAILDAR---NGKVINSW------------------------------------RPMECD 920 (1034)
T ss_pred C-------cchhhHHhcCCcEEEEecC---CCceeccC------------------------------------Ccccch
Confidence 8 8899999999999999955 46655433 111111
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEE-EECCCCcEEEEe
Q 000054 2457 VTRISTVPNTSLFLTGSKDGDVKL-WDAKAAQLVYHW 2492 (2548)
Q Consensus 2457 VtsLafSPdG~~LaSGS~DGtIrI-WDl~Tgell~tL 2492 (2548)
...++ .|..+.|+....|.++.| |..-+|....+.
T Consensus 921 llqla-apsdq~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 921 LLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred hhhhc-CchhHHHHhhcccceeEeeehhcCCeeeecc
Confidence 11221 355667777777778877 877666655444
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0001 Score=89.09 Aligned_cols=161 Identities=14% Similarity=0.208 Sum_probs=115.5
Q ss_pred EEEEccC--CCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEEC
Q 000054 2276 ALQFDHY--GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDT 2351 (2548)
Q Consensus 2276 sVaFSPd--G~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl 2351 (2548)
.++|+-+ |-. ++.+.+-.|-+-++++|.... +. ...+|.+ |...++++..|+ .+|.|...|+
T Consensus 216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~qs---------f~-sksDVfAlQf~~s~nLv~~Gc---RngeI~~iDL 281 (425)
T KOG2695|consen 216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQS---------FQ-SKSDVFALQFAGSDNLVFNGC---RNGEIFVIDL 281 (425)
T ss_pred hhhhhhccceee-ecccccceeEEEEeecccccc---------cc-cchhHHHHHhcccCCeeEecc---cCCcEEEEEe
Confidence 3355532 333 556667788899999884322 33 4456665 555677888876 8999999999
Q ss_pred CCCC---CCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccc
Q 000054 2352 LAPP---TSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAH 2428 (2548)
Q Consensus 2352 ~t~~---~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~v 2428 (2548)
+... +.+.+.+ -|.+.|+++....-+ ++.|++.+.+|+|++||+|..+.++.+.+.
T Consensus 282 R~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s------~q~LmaS~M~gkikLyD~R~~K~~~~V~qY-------------- 340 (425)
T KOG2695|consen 282 RCRNQGNGWCAQRL-YHDSSVTSLQILQFS------QQKLMASDMTGKIKLYDLRATKCKKSVMQY-------------- 340 (425)
T ss_pred eecccCCCcceEEE-EcCcchhhhhhhccc------cceEeeccCcCceeEeeehhhhcccceeee--------------
Confidence 8631 2233443 589999999876633 679999999999999999987666656554
Q ss_pred ccCCCCCCccCCCCCceEEEcccCCCCCEE--EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000054 2429 ADAQTGSGSKPGDQNGMLWYIPKAHLGSVT--RISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2429 afSpdGk~v~s~D~sv~Iwdi~~gH~~~Vt--sLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
.||-..-. -+-.++.+..++++|.|...+||.+++|.++.+++
T Consensus 341 ----------------------eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 341 ----------------------EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred ----------------------ecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 55543222 23356677889999999999999999999999885
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00038 Score=86.52 Aligned_cols=265 Identities=17% Similarity=0.110 Sum_probs=165.9
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC-CCcEEEEEcCCCcccccc
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DGTVCTWQLEVGGRSNVR 2309 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-DGtVrVWDl~tgk~i~i~ 2309 (2548)
.+++.+++.||.++.|.-..-.-+.-++.+. .|.+.|.+++.+-+|..+.|.+. |..++++|++.-...+..
T Consensus 20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFr-------aHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminmi 92 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFR-------AHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMI 92 (558)
T ss_pred hheEEeeecchhhhhcCCCCccceeehhhhH-------HHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhc
Confidence 4789999999999999865422222222222 25688999999999999999777 999999999865433211
Q ss_pred cCccceeccCCcccEEEEcCCC---CEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCC
Q 000054 2310 PMESCLCFSSHAMDVSYITSSG---SVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSP 2386 (2548)
Q Consensus 2310 p~~s~~t~~gH~~~V~afSpdG---slLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~ 2386 (2548)
. +.--...+.++...| ..+++.. -+++.+.++|-.....+....-.-|..+|.++.+.+. +.
T Consensus 93 K------L~~lPg~a~wv~skGd~~s~IAVs~--~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa-------~D 157 (558)
T KOG0882|consen 93 K------LVDLPGFAEWVTSKGDKISLIAVSL--FKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQA-------GD 157 (558)
T ss_pred c------cccCCCceEEecCCCCeeeeEEeec--ccCCCcEEECCcCCcCccceecccccCceEEEEeecc-------cc
Confidence 1 111122333333333 2455543 2789999999876433444555569999999999998 77
Q ss_pred EEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCC
Q 000054 2387 LIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNT 2466 (2548)
Q Consensus 2387 lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG 2466 (2548)
.+++....|.|.-|... + ..+.. .++.........-++.. ........++.|+|+|
T Consensus 158 s~vSiD~~gmVEyWs~e----~-~~qfP------------------r~~l~~~~K~eTdLy~f-~K~Kt~pts~Efsp~g 213 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAE----G-PFQFP------------------RTNLNFELKHETDLYGF-PKAKTEPTSFEFSPDG 213 (558)
T ss_pred ceeeccccceeEeecCC----C-cccCc------------------cccccccccccchhhcc-cccccCccceEEcccc
Confidence 89999999999999943 1 11100 00000000001111111 2234566799999999
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEecccccccccc------------------cCcccCCCCceeecEEEEEEcCCe--
Q 000054 2467 SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFL------------------QPSSRGFGGVVRAGVTDIQVVSRG-- 2526 (2548)
Q Consensus 2467 ~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl------------------~~tl~GH~~~V~a~VtsLafSPdG-- 2526 (2548)
..+.+-+.|..|++++.++|++++.+.......... .+.+.-|+..+ -+.+.|+..|
T Consensus 214 ~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~---~~~~~fdes~~f 290 (558)
T KOG0882|consen 214 AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTV---GTNAVFDESGNF 290 (558)
T ss_pred CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcc---cceeEEcCCCCE
Confidence 999999999999999999999988774311111110 11122233222 2455788888
Q ss_pred EEEEECCCcEEEEECCCCc
Q 000054 2527 FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2527 LaSGS~DGtIrIWDL~sg~ 2545 (2548)
|+-|+- =-|++.++.++.
T Consensus 291 lly~t~-~gikvin~~tn~ 308 (558)
T KOG0882|consen 291 LLYGTI-LGIKVINLDTNT 308 (558)
T ss_pred EEeecc-eeEEEEEeecCe
Confidence 444443 347888887763
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00043 Score=88.94 Aligned_cols=149 Identities=13% Similarity=0.147 Sum_probs=115.2
Q ss_pred CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccc
Q 000054 2230 LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVR 2309 (2548)
Q Consensus 2230 dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~ 2309 (2548)
+-..++-|...|.|.+|+...|+....+. ...|.+.|.++.++.+-..|.+++.|+.+..|+........+
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~s--------t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~- 139 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLS--------TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRI- 139 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEe--------cCCCCCcceeeecccccCceEecCCceeEEEEecccceeeee-
Confidence 34467779999999999999998877763 356889999999999999999999999999999987653322
Q ss_pred cCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCE
Q 000054 2310 PMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPL 2387 (2548)
Q Consensus 2310 p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~l 2387 (2548)
+......+. +++|||..+++|+ +.|++||+.+ .+.+..|.||.+.|+++.|.-. + .+-.|.+
T Consensus 140 -------~~~~~~~~~sl~is~D~~~l~~as-----~~ik~~~~~~--kevv~~ftgh~s~v~t~~f~~~-~-~g~~G~~ 203 (541)
T KOG4547|consen 140 -------WKEQKPLVSSLCISPDGKILLTAS-----RQIKVLDIET--KEVVITFTGHGSPVRTLSFTTL-I-DGIIGKY 203 (541)
T ss_pred -------eccCCCccceEEEcCCCCEEEecc-----ceEEEEEccC--ceEEEEecCCCcceEEEEEEEe-c-cccccce
Confidence 333333332 5899999999975 8999999987 7889999999999999999765 1 1223444
Q ss_pred EE-EEeCCCcEEEEeCC
Q 000054 2388 IV-TGGKGGDVGIHDFR 2403 (2548)
Q Consensus 2388 LV-SGS~DGtVrLWDLR 2403 (2548)
+. +...+..+.+|=++
T Consensus 204 vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 204 VLSSAAAERGITVWVVE 220 (541)
T ss_pred eeeccccccceeEEEEE
Confidence 44 44566777888754
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00057 Score=90.54 Aligned_cols=189 Identities=14% Similarity=0.220 Sum_probs=136.8
Q ss_pred CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccc
Q 000054 2230 LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVR 2309 (2548)
Q Consensus 2230 dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~ 2309 (2548)
++..++.|+-...+..+|+.+++..+.... ..+.|+-|+- +++.+.+|...|+|.+-|.++-+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v----------~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~----- 208 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNV----------SASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFE----- 208 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeec----------cCCceEEEEe--cCcEEEeecccceEEeecCCcCc-----
Confidence 456678888888888999998877666432 1134666665 48899999999999999988654
Q ss_pred cCccceeccCCcccEEEEcCCCCEEEEEeccC------CCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCC
Q 000054 2310 PMESCLCFSSHAMDVSYITSSGSVIAAAGHSS------NGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGS 2383 (2548)
Q Consensus 2310 p~~s~~t~~gH~~~V~afSpdGslLATgG~SS------~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs 2383 (2548)
...++..|.+.|..|+-.|++++++|+|. -|..|++||+++ .+.+.-+.-+.++ .-+.|+|.-
T Consensus 209 ---~iht~~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRm--mral~PI~~~~~P-~flrf~Psl----- 277 (1118)
T KOG1275|consen 209 ---TIHTFDAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRM--MRALSPIQFPYGP-QFLRFHPSL----- 277 (1118)
T ss_pred ---eeeeeeccccceeeeeccCCeEEEeecccccccccccchhhhhhhhh--hhccCCcccccCc-hhhhhcccc-----
Confidence 33568899999999999999999999753 356699999986 3444444444433 567888883
Q ss_pred CCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEe
Q 000054 2384 VSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTV 2463 (2548)
Q Consensus 2384 ~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafS 2463 (2548)
...+++++..|...+-|.-.+ +... ..+..+ ..-...+.++.++
T Consensus 278 -~t~~~V~S~sGq~q~vd~~~l--sNP~--------------------------------~~~~~v-~p~~s~i~~fDiS 321 (1118)
T KOG1275|consen 278 -TTRLAVTSQSGQFQFVDTATL--SNPP--------------------------------AGVKMV-NPNGSGISAFDIS 321 (1118)
T ss_pred -cceEEEEecccceeecccccc--CCCc--------------------------------cceeEE-ccCCCcceeEEec
Confidence 668999999999999883111 1110 000000 1123358899999
Q ss_pred CCCCEEEEEeCCCcEEEEE
Q 000054 2464 PNTSLFLTGSKDGDVKLWD 2482 (2548)
Q Consensus 2464 PdG~~LaSGS~DGtIrIWD 2482 (2548)
++|+.++-|..+|.|.+|.
T Consensus 322 sn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 322 SNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred CCCceEEEecccCcEeeec
Confidence 9999999999999999998
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.033 Score=78.92 Aligned_cols=221 Identities=15% Similarity=0.099 Sum_probs=134.4
Q ss_pred EEEEEEcCCCCEEEEEEC---C---CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC---C
Q 000054 2222 TRAFSSHPLRPFFLVGSS---N---THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL---D 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~---D---GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~---D 2292 (2548)
...++|-.||.|+|+.+- . ..+|||+-+ |....+-+.. .+--.+++|-|.|+++|+... .
T Consensus 212 ~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v----------~gLe~~l~WrPsG~lIA~~q~~~~~ 280 (928)
T PF04762_consen 212 RVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV----------DGLEGALSWRPSGNLIASSQRLPDR 280 (928)
T ss_pred ceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC----------CCccCCccCCCCCCEEEEEEEcCCC
Confidence 378899999999997653 3 579999965 5433332111 133457899999999998865 3
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc-CCCe
Q 000054 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH-EGGA 2369 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH-s~~V 2369 (2548)
..|.+|.-+.-++..+. ..+......|. .|++|+.++|..- ...|++|-...-..-..+.+... ...+
T Consensus 281 ~~VvFfErNGLrhgeF~-----l~~~~~~~~v~~l~Wn~ds~iLAv~~----~~~vqLWt~~NYHWYLKqei~~~~~~~~ 351 (928)
T PF04762_consen 281 HDVVFFERNGLRHGEFT-----LRFDPEEEKVIELAWNSDSEILAVWL----EDRVQLWTRSNYHWYLKQEIRFSSSESV 351 (928)
T ss_pred cEEEEEecCCcEeeeEe-----cCCCCCCceeeEEEECCCCCEEEEEe----cCCceEEEeeCCEEEEEEEEEccCCCCC
Confidence 46777776543322211 01122333443 5999999999974 33499999865322334444432 3345
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCC-CccCCCC-CceEE
Q 000054 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGS-GSKPGDQ-NGMLW 2447 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk-~v~s~D~-sv~Iw 2447 (2548)
..+.|+|.+ ...|.....+|.+..+++.. ..... -..+|+.. .++.-|| ++.+-
T Consensus 352 ~~~~Wdpe~------p~~L~v~t~~g~~~~~~~~~-------~v~~s-----------~~~~~~D~g~vaVIDG~~lllT 407 (928)
T PF04762_consen 352 NFVKWDPEK------PLRLHVLTSNGQYEIYDFAW-------DVSRS-----------PGSSPNDNGTVAVIDGNKLLLT 407 (928)
T ss_pred CceEECCCC------CCEEEEEecCCcEEEEEEEE-------EEEec-----------CCCCccCceEEEEEeCCeEEEe
Confidence 569999985 66788888888888877532 00000 00011111 1222222 22221
Q ss_pred Ecc------------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 000054 2448 YIP------------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAA 2486 (2548)
Q Consensus 2448 di~------------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tg 2486 (2548)
... -.-...|.+++|++++..+++-..||.|.+|.....
T Consensus 408 pf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 408 PFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred cccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 110 123578999999999988999999999999986543
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00068 Score=80.85 Aligned_cols=222 Identities=18% Similarity=0.235 Sum_probs=126.7
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCc-ccccccCccceeccCCc---------------ccEEEEcCCCC-E
Q 000054 2271 LASISALQFDHYGHRFASAALDGTVCTWQLEVGG-RSNVRPMESCLCFSSHA---------------MDVSYITSSGS-V 2333 (2548)
Q Consensus 2271 ~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk-~i~i~p~~s~~t~~gH~---------------~~V~afSpdGs-l 2333 (2548)
.+.|++|.|...|.++++|...|.|.++.-+... +.. .-...+++|. ..|.++.+.|+ .
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~cey----kf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~h 101 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEY----KFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNH 101 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccch----hhhhhhcccccchhhhhhccHHHHhhheeeecCCCcce
Confidence 3789999999999999999999999999876432 111 0111244443 23344555443 3
Q ss_pred EEEEeccCCCCeEEEEECCCCCCCcce----------------------------------------ee-eccCCCeEEE
Q 000054 2334 IAAAGHSSNGINVVVWDTLAPPTSSRA----------------------------------------SI-TCHEGGARSI 2372 (2548)
Q Consensus 2334 LATgG~SS~DGtVrIWDl~t~~~k~v~----------------------------------------sl-~gHs~~VtSL 2372 (2548)
++..+ .|++|++|.+.....+.+. .. ..|.--++++
T Consensus 102 FLlst---NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSi 178 (460)
T COG5170 102 FLLST---NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSI 178 (460)
T ss_pred EEEec---CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeee
Confidence 33333 8999999998643111100 00 1344455666
Q ss_pred EEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc-
Q 000054 2373 SVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK- 2451 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~- 2451 (2548)
.++.+ ...+++ +.|=.|.+|++.. .|+.-.|.|+..
T Consensus 179 S~NsD-------~et~lS-aDdLrINLWnl~i-----------------------------------~D~sFnIVDiKP~ 215 (460)
T COG5170 179 SFNSD-------KETLLS-ADDLRINLWNLEI-----------------------------------IDGSFNIVDIKPH 215 (460)
T ss_pred eecCc-------hheeee-ccceeeeeccccc-----------------------------------cCCceEEEeccCc
Confidence 66655 233333 3466677777431 111222333311
Q ss_pred ---CCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-
Q 000054 2452 ---AHLGSVTRISTVPNT-SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG- 2526 (2548)
Q Consensus 2452 ---gH~~~VtsLafSPdG-~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG- 2526 (2548)
.-..-|++..|+|.. ..+.-.+..|.|++-|++...+...-....+. +.=+....+..+.+ +.|.++.|+++|
T Consensus 216 nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~-~~D~v~~~ff~eiv-sSISD~kFs~ngr 293 (460)
T COG5170 216 NMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFEL-TIDGVDVDFFEEIV-SSISDFKFSDNGR 293 (460)
T ss_pred cHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhh-ccCcccchhHHHHh-hhhcceEEcCCCc
Confidence 123467888899954 56667778999999999854432111000000 00000011222333 557899999999
Q ss_pred EEEEECCCcEEEEECCCC
Q 000054 2527 FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2527 LaSGS~DGtIrIWDL~sg 2544 (2548)
++.+-+--+|++||+...
T Consensus 294 yIlsRdyltvkiwDvnm~ 311 (460)
T COG5170 294 YILSRDYLTVKIWDVNMA 311 (460)
T ss_pred EEEEeccceEEEEecccc
Confidence 555556689999998643
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.031 Score=69.31 Aligned_cols=247 Identities=11% Similarity=0.150 Sum_probs=148.8
Q ss_pred EEEEEcCCCCEEEEEEC---CCeEEEEEcCC--CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC-CcEE
Q 000054 2223 RAFSSHPLRPFFLVGSS---NTHIYLWEFGK--DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD-GTVC 2296 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~---DGsVrLWDl~t--g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D-GtVr 2296 (2548)
.=++++|++++|.++.. +|.|.-|.++. |+.. .+.... ..+ ..-..++++++|++++++... |.|.
T Consensus 43 tyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt-~ln~~~-----~~g--~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 43 TYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT-FLNRQT-----LPG--SPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred ceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE-Eeeccc-----cCC--CCCeEEEECCCCCEEEEEEccCceEE
Confidence 56778899988887644 57788888875 4432 221111 111 223889999999999999765 7999
Q ss_pred EEEcCCCcccccccCccceecc---CCcc---c-EE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcce-eeeccC
Q 000054 2297 TWQLEVGGRSNVRPMESCLCFS---SHAM---D-VS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA-SITCHE 2366 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~---gH~~---~-V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~-sl~gHs 2366 (2548)
++-++....+. +........ .|.. . +. -+.|+++++++..- .--.|.+|++..+...... ....-.
T Consensus 115 v~p~~~dG~l~--~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL--G~Dri~~y~~~dg~L~~~~~~~v~~G 190 (346)
T COG2706 115 VYPLQADGSLQ--PVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL--GTDRIFLYDLDDGKLTPADPAEVKPG 190 (346)
T ss_pred EEEcccCCccc--cceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec--CCceEEEEEcccCccccccccccCCC
Confidence 99986533221 000000011 1111 0 22 28899999999852 3446899998753222221 111345
Q ss_pred CCeEEEEEccCCCCCCCCCCEEEE-EeCCCcEEEEeCCccccC--ceeeeec--CCCCCCCccccccccCCCCCCccCCC
Q 000054 2367 GGARSISVFDNDLGSGSVSPLIVT-GGKGGDVGIHDFRYIATG--KTKKHKH--SDRGGSSINTCAHADAQTGSGSKPGD 2441 (2548)
Q Consensus 2367 ~~VtSLafsP~dlg~gs~g~lLVS-GS~DGtVrLWDLR~l~TG--k~l~tl~--~~~~~s~~~~~~vafSpdGk~v~s~D 2441 (2548)
.+.+.|.|+|+ +++... +--+++|-+|..... .+ +.++.+. ...-........+.+++||+++...+
T Consensus 191 ~GPRHi~FHpn-------~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN 262 (346)
T COG2706 191 AGPRHIVFHPN-------GKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN 262 (346)
T ss_pred CCcceEEEcCC-------CcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec
Confidence 67899999999 565444 456899999996521 22 2233321 11223344456678899999844443
Q ss_pred C---CceEEEccc------------CCCCCEEEEEEeCCCCEEEEEeCCC-cEEEEECC--CCcEE
Q 000054 2442 Q---NGMLWYIPK------------AHLGSVTRISTVPNTSLFLTGSKDG-DVKLWDAK--AAQLV 2489 (2548)
Q Consensus 2442 ~---sv~Iwdi~~------------gH~~~VtsLafSPdG~~LaSGS~DG-tIrIWDl~--Tgell 2489 (2548)
+ .+.++.+.. -+...-+...++|+|++|++++.|+ .|.+|... +|++-
T Consensus 263 Rg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 263 RGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred CCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 3 344554322 2333356788999999999998855 68888664 56554
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.014 Score=74.56 Aligned_cols=275 Identities=9% Similarity=0.133 Sum_probs=147.9
Q ss_pred EEEEEEcCCCCEEEEEE-----------CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe
Q 000054 2222 TRAFSSHPLRPFFLVGS-----------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA 2290 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS-----------~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS 2290 (2548)
+.-+.|||..+||+|-+ ....++|||+.+|...+.|....+. ...-.-.+||.|++++|--.
T Consensus 252 Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~-------~~~WP~frWS~DdKy~Arm~ 324 (698)
T KOG2314|consen 252 VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSP-------YLKWPIFRWSHDDKYFARMT 324 (698)
T ss_pred ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCC-------ccccceEEeccCCceeEEec
Confidence 47888999999999843 2257999999999998888654321 12223468999999998766
Q ss_pred CCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCC--CeEEEEECCCCCCCcceeeeccC
Q 000054 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNG--INVVVWDTLAPPTSSRASITCHE 2366 (2548)
Q Consensus 2291 ~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~D--GtVrIWDl~t~~~k~v~sl~gHs 2366 (2548)
. .+|.|++...-.....++ + ....|. .|+|.+++||.-.-..++ ..+.+-.+- ..+.+++-.-|.
T Consensus 325 ~-~sisIyEtpsf~lld~Ks------l--ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evP--s~~~iRt~nlfn 393 (698)
T KOG2314|consen 325 G-NSISIYETPSFMLLDKKS------L--KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVP--SKREIRTKNLFN 393 (698)
T ss_pred c-ceEEEEecCceeeecccc------c--CCccccCcccCCCcceEEEEcccccCCcceEEEEecC--ccceeeecccee
Confidence 6 577888876432111111 1 111222 377877777764210011 123333332 122232222221
Q ss_pred CCeEEEEEccCCCCCCCCCCEEEE----------EeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC
Q 000054 2367 GGARSISVFDNDLGSGSVSPLIVT----------GGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG 2436 (2548)
Q Consensus 2367 ~~VtSLafsP~dlg~gs~g~lLVS----------GS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~ 2436 (2548)
-.=..+.|-.+ |.+|+. +|.-..+.|+.+|.-. -.+.. ..-....-..+|-|.|..
T Consensus 394 VsDckLhWQk~-------gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd--Ipve~-----velke~vi~FaWEP~gdk 459 (698)
T KOG2314|consen 394 VSDCKLHWQKS-------GDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD--IPVEV-----VELKESVIAFAWEPHGDK 459 (698)
T ss_pred eeccEEEeccC-------CcEEEEEEEeeccccccceEeeEEEEEeeccC--CCcee-----eecchheeeeeeccCCCe
Confidence 11111222222 444443 1222234555544200 00000 111122334567777765
Q ss_pred ---cc--CCCCCceEEEcc-cCC---------CCCEEEEEEeCCCCEEEEEe---CCCcEEEEECCCCcEEEEecccccc
Q 000054 2437 ---SK--PGDQNGMLWYIP-KAH---------LGSVTRISTVPNTSLFLTGS---KDGDVKLWDAKAAQLVYHWSKLHER 2498 (2548)
Q Consensus 2437 ---v~--s~D~sv~Iwdi~-~gH---------~~~VtsLafSPdG~~LaSGS---~DGtIrIWDl~Tgell~tL~~~Hs~ 2498 (2548)
+. ....++..|.+. ..| ....+.+.|+|.|++++.+. .-|.+.++|+.-..+..+- +.
T Consensus 460 F~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~---~~- 535 (698)
T KOG2314|consen 460 FAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTA---SP- 535 (698)
T ss_pred EEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhcc---Cc-
Confidence 11 223345556543 111 23567899999999998874 4789999998743333211 11
Q ss_pred cccccCcccCCCCceeecEEEEEEcCCe--EEEEEC------CCcEEEEECCCCcc
Q 000054 2499 HTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGG------DGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2499 hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~------DGtIrIWDL~sg~l 2546 (2548)
-| ...+.+.|+|.| ++|++. |.--++|++.+..+
T Consensus 536 ---------eh-----~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll 577 (698)
T KOG2314|consen 536 ---------EH-----FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLL 577 (698)
T ss_pred ---------cc-----cccccceECCCCCEEEEeeehhhhccccceEEEEeecHHH
Confidence 12 124567999999 666654 66678888876543
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.026 Score=71.05 Aligned_cols=165 Identities=12% Similarity=0.063 Sum_probs=113.0
Q ss_pred CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC-cEEEEEcCCCccccc
Q 000054 2230 LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG-TVCTWQLEVGGRSNV 2308 (2548)
Q Consensus 2230 dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG-tVrVWDl~tgk~i~i 2308 (2548)
+|.+++..+. |.+.|.+...+-.+.. +|.+.|.-..+..+++.++.|..|| .+-++|.++++...
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv------------~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr- 396 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQV------------GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR- 396 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEc------------CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-
Confidence 5777777665 5666666554443332 2347788888888888999999999 99999999885322
Q ss_pred ccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCC
Q 000054 2309 RPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSP 2386 (2548)
Q Consensus 2309 ~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~ 2386 (2548)
+.+.-+.|.+ .+++|+.++++. +...+-+.|+.+ ++....-+...+-|+.+.|+|+ +.
T Consensus 397 --------~e~~lg~I~av~vs~dGK~~vvaN---dr~el~vididn--gnv~~idkS~~~lItdf~~~~n-------sr 456 (668)
T COG4946 397 --------IEKDLGNIEAVKVSPDGKKVVVAN---DRFELWVIDIDN--GNVRLIDKSEYGLITDFDWHPN-------SR 456 (668)
T ss_pred --------eeCCccceEEEEEcCCCcEEEEEc---CceEEEEEEecC--CCeeEecccccceeEEEEEcCC-------ce
Confidence 3333344543 799999999874 566777788876 4444444456788999999999 78
Q ss_pred EEEEEeCCC----cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC
Q 000054 2387 LIVTGGKGG----DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG 2436 (2548)
Q Consensus 2387 lLVSGS~DG----tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~ 2436 (2548)
+++-+--+| .|+++| +..++..... .+. ..--.-+|.|||++
T Consensus 457 ~iAYafP~gy~tq~Iklyd---m~~~Kiy~vT-T~t----a~DfsPaFD~d~ry 502 (668)
T COG4946 457 WIAYAFPEGYYTQSIKLYD---MDGGKIYDVT-TPT----AYDFSPAFDPDGRY 502 (668)
T ss_pred eEEEecCcceeeeeEEEEe---cCCCeEEEec-CCc----ccccCcccCCCCcE
Confidence 888877665 689999 5556655443 111 11123467788886
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00047 Score=89.20 Aligned_cols=201 Identities=14% Similarity=0.186 Sum_probs=128.8
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceec-cCCcccEEEEcCCC--C-EEEEEeccCCCCeEE
Q 000054 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCF-SSHAMDVSYITSSG--S-VIAAAGHSSNGINVV 2347 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~-~gH~~~V~afSpdG--s-lLATgG~SS~DGtVr 2347 (2548)
+.+.++..+|.|+-++.++.-|.. +-|+...- .|..-..-. ....+++ .|++.. . .+++. ....-.
T Consensus 25 ~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~----~ppr~l~h~tpw~vad~-qws~h~a~~~wiVst----s~qkai 94 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQGLY-IIDLDDPF----TPPRWLHHITPWQVADV-QWSPHPAKPYWIVST----SNQKAI 94 (1081)
T ss_pred CcccceeeccccchhhhhhhcCeE-EEeccCCC----CCceeeeccCcchhcce-ecccCCCCceeEEec----Ccchhh
Confidence 667888999999999999887755 45665331 111100000 1111122 144332 2 34443 345566
Q ss_pred EEECCCCCCCcc-eeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000054 2348 VWDTLAPPTSSR-ASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2348 IWDl~t~~~k~v-~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
+|++..+..+.+ ..+.+|+.+|+.+.|+|.+ ...+++++.|-.|..||+|... ..+
T Consensus 95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~------pdVlatcsvdt~vh~wd~rSp~--~p~--------------- 151 (1081)
T KOG0309|consen 95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQH------PDVLATCSVDTYVHAWDMRSPH--RPF--------------- 151 (1081)
T ss_pred hhhhhcCCccceEEEEecCccceeccccCCCC------CcceeeccccccceeeeccCCC--cce---------------
Confidence 898876444443 4566999999999999986 7799999999999999976311 111
Q ss_pred ccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-EEEEecccccccccccCc
Q 000054 2427 AHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQ-LVYHWSKLHERHTFLQPS 2505 (2548)
Q Consensus 2427 ~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tge-ll~tL~~~Hs~hsfl~~t 2505 (2548)
+.| ..-......|+|+-....+.+.+....|++||.+.|. ++..+
T Consensus 152 ------------------ys~---~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~------------- 197 (1081)
T KOG0309|consen 152 ------------------YST---SSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSL------------- 197 (1081)
T ss_pred ------------------eee---ecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEe-------------
Confidence 111 1123345678888755555555677899999999765 44444
Q ss_pred ccCCCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCCC
Q 000054 2506 SRGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2506 l~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~sg 2544 (2548)
++|- +.|..++|...- +.+++.||+|++||.+..
T Consensus 198 -K~~v----s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS 234 (1081)
T KOG0309|consen 198 -KGHV----SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS 234 (1081)
T ss_pred -cccc----eeeehHHHhhhhhhhhcccCCCCceeeeccccc
Confidence 5554 344556776544 889999999999998753
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.017 Score=71.41 Aligned_cols=205 Identities=14% Similarity=0.109 Sum_probs=131.1
Q ss_pred CeEEEEEcc-CCCEEEEEeCCC-cEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEec--cCCCCeEEE
Q 000054 2273 SISALQFDH-YGHRFASAALDG-TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGH--SSNGINVVV 2348 (2548)
Q Consensus 2273 ~VtsVaFSP-dG~~LaSGS~DG-tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~--SS~DGtVrI 2348 (2548)
....++.+| .+..++.+-.-| ...+||..+++...........-|.+|. .|++||+++++.-. .+..|.|-|
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg----~fs~dG~~LytTEnd~~~g~G~IgV 81 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHG----VFSPDGRLLYTTENDYETGRGVIGV 81 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCE----EEcCCCCEEEEeccccCCCcEEEEE
Confidence 345677788 566667777766 4567999888755433333334455665 59999999998631 124678999
Q ss_pred EECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe------------------CCCcEEEEeCCccccCce
Q 000054 2349 WDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGG------------------KGGDVGIHDFRYIATGKT 2410 (2548)
Q Consensus 2349 WDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS------------------~DGtVrLWDLR~l~TGk~ 2410 (2548)
||... ..+.+..+..|.-+-..+.+.|+ ++.|+.+- .+-++.+.| ..+|+.
T Consensus 82 yd~~~-~~~ri~E~~s~GIGPHel~l~pD-------G~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld---~~sG~l 150 (305)
T PF07433_consen 82 YDAAR-GYRRIGEFPSHGIGPHELLLMPD-------GETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLD---ARSGAL 150 (305)
T ss_pred EECcC-CcEEEeEecCCCcChhhEEEcCC-------CCEEEEEcCCCccCcccCceecChhhcCCceEEEe---cCCCce
Confidence 99983 35667788877777788888988 54554432 122344444 456666
Q ss_pred eeeecCCCCCCCccccccccCCCCCCccCCCCCc---------eEEE---------c----ccCCCCCEEEEEEeCCCCE
Q 000054 2411 KKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNG---------MLWY---------I----PKAHLGSVTRISTVPNTSL 2468 (2548)
Q Consensus 2411 l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv---------~Iwd---------i----~~gH~~~VtsLafSPdG~~ 2468 (2548)
+.....+.......+..+++.++|.........+ -+++ . ...-.+.|-+|++++++.+
T Consensus 151 l~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ 230 (305)
T PF07433_consen 151 LEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRL 230 (305)
T ss_pred eeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCE
Confidence 6554333333444567778888877622221111 1111 1 1134578999999999987
Q ss_pred EEEEe-CCCcEEEEECCCCcEEEEe
Q 000054 2469 FLTGS-KDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2469 LaSGS-~DGtIrIWDl~Tgell~tL 2492 (2548)
++..| .-|.+.+||..+++.+...
T Consensus 231 ia~tsPrGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 231 IAVTSPRGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred EEEECCCCCEEEEEECCCCCEeecc
Confidence 75554 5779999999999998755
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00059 Score=80.34 Aligned_cols=73 Identities=22% Similarity=0.416 Sum_probs=57.4
Q ss_pred CEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEEE
Q 000054 2456 SVTRISTVPN-TSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCG 2531 (2548)
Q Consensus 2456 ~VtsLafSPd-G~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS 2531 (2548)
.|++++-+|. ...+++|+.||.+-+||.+.......+ +..|.. .++.+.|+|.. |++++
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~-------------l~ahk~----~i~eV~FHpk~p~~Lft~s 243 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL-------------LKAHKA----EIWEVHFHPKNPEHLFTCS 243 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH-------------HHHhhh----hhhheeccCCCchheeEec
Confidence 4889999995 467788889999999999977443333 567764 45666999977 99999
Q ss_pred CCCcEEEEECCCCc
Q 000054 2532 GDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2532 ~DGtIrIWDL~sg~ 2545 (2548)
.||.+-.||-.+..
T Consensus 244 edGslw~wdas~~~ 257 (319)
T KOG4714|consen 244 EDGSLWHWDASTTF 257 (319)
T ss_pred CCCcEEEEcCCCce
Confidence 99999999987543
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00045 Score=59.20 Aligned_cols=35 Identities=29% Similarity=0.649 Sum_probs=32.8
Q ss_pred EcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000054 2448 YIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWD 2482 (2548)
Q Consensus 2448 di~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWD 2482 (2548)
..+.+|.+.|++|+|+|++.+|++|+.|+.|++||
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 34589999999999999999999999999999998
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.011 Score=76.02 Aligned_cols=150 Identities=13% Similarity=0.218 Sum_probs=102.8
Q ss_pred EEEEEEcCCCCEEE---EEECC---------CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE
Q 000054 2222 TRAFSSHPLRPFFL---VGSSN---------THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA 2289 (2548)
Q Consensus 2222 V~~VsfSPdG~~LA---SGS~D---------GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG 2289 (2548)
-..+.|++-|.-|+ +..-| .++++.+++.......+. ..++|.++.|+++|+.|+++
T Consensus 220 kvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-----------k~GPVhdv~W~~s~~EF~Vv 288 (566)
T KOG2315|consen 220 KVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-----------KEGPVHDVTWSPSGREFAVV 288 (566)
T ss_pred eeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-----------CCCCceEEEECCCCCEEEEE
Confidence 36778887776332 23223 357777776333333321 13899999999999887765
Q ss_pred --eCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCC
Q 000054 2290 --ALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG 2367 (2548)
Q Consensus 2290 --S~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~ 2367 (2548)
-.=..+.++|++..-. ..+......-..|+|.|++++.+|.+.-.|.+-+||+.. .+.+..+.+ .
T Consensus 289 yGfMPAkvtifnlr~~~v---------~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n--~K~i~~~~a--~ 355 (566)
T KOG2315|consen 289 YGFMPAKVTIFNLRGKPV---------FDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN--RKLIAKFKA--A 355 (566)
T ss_pred EecccceEEEEcCCCCEe---------EeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc--hhhcccccc--C
Confidence 4456889999874311 112222222335999999999999877789999999975 566766654 3
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeC------CCcEEEEeC
Q 000054 2368 GARSISVFDNDLGSGSVSPLIVTGGK------GGDVGIHDF 2402 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~------DGtVrLWDL 2402 (2548)
..+-+.|+|+ |.+++|+.. |+.++||+.
T Consensus 356 ~tt~~eW~Pd-------Ge~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 356 NTTVFEWSPD-------GEYFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred CceEEEEcCC-------CcEEEEEeccccEEecCCeEEEEe
Confidence 4567899999 788888763 789999995
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.036 Score=72.47 Aligned_cols=159 Identities=13% Similarity=0.150 Sum_probs=90.2
Q ss_pred CCeEEEEEccCCCE-EEEEeCC---CcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEE
Q 000054 2272 ASISALQFDHYGHR-FASAALD---GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVV 2347 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~-LaSGS~D---GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVr 2347 (2548)
+.+..-.|+|||+. ++..+.+ ..|.++|+.+++...+. ...+. .....|+|||+.++.......+..|.
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt------~~~g~-~~~~~~SPDG~~la~~~~~~g~~~Iy 260 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA------SSQGM-LVVSDVSKDGSKLLLTMAPKGQPDIY 260 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe------cCCCc-EEeeEECCCCCEEEEEEccCCCcEEE
Confidence 35778999999985 6654443 46888898877533221 11111 12235899998777543111345677
Q ss_pred EEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEE-EEeCCC--cEEEEeCCccccCceeeeecCCCCCCCcc
Q 000054 2348 VWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIV-TGGKGG--DVGIHDFRYIATGKTKKHKHSDRGGSSIN 2424 (2548)
Q Consensus 2348 IWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLV-SGS~DG--tVrLWDLR~l~TGk~l~tl~~~~~~s~~~ 2424 (2548)
++|+.. +. ...+..+.+......|+|+ |+.|+ +....| .|.+.| +.+++..+..
T Consensus 261 ~~dl~~--g~-~~~LT~~~~~d~~p~~SPD-------G~~I~F~Sdr~g~~~Iy~~d---l~~g~~~rlt---------- 317 (419)
T PRK04043 261 LYDTNT--KT-LTQITNYPGIDVNGNFVED-------DKRIVFVSDRLGYPNIFMKK---LNSGSVEQVV---------- 317 (419)
T ss_pred EEECCC--Cc-EEEcccCCCccCccEECCC-------CCEEEEEECCCCCceEEEEE---CCCCCeEeCc----------
Confidence 778764 22 3334333433445679998 55444 443444 455555 3444432221
Q ss_pred ccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCC---------CcEEEEECCCCcEE
Q 000054 2425 TCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKD---------GDVKLWDAKAAQLV 2489 (2548)
Q Consensus 2425 ~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~D---------GtIrIWDl~Tgell 2489 (2548)
..+.. ...|+|+|+.++..+.. ..|.+.|+.+++..
T Consensus 318 -------------------------~~g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~ 362 (419)
T PRK04043 318 -------------------------FHGKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR 362 (419)
T ss_pred -------------------------cCCCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE
Confidence 01111 13789999888766543 36788888887653
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0046 Score=79.96 Aligned_cols=222 Identities=12% Similarity=0.106 Sum_probs=135.1
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccc-ccc------CccceeccCCcccEE--EEcCCCCEEEEEeccCC
Q 000054 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSN-VRP------MESCLCFSSHAMDVS--YITSSGSVIAAAGHSSN 2342 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~-i~p------~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~ 2342 (2548)
....++.|+....+++.|+.||.+++-.+.+..... ..+ ....+++.||...|. .|+.+.+.+.+.. .
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD---t 91 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD---T 91 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC---C
Confidence 568899999999999999999999999887542111 111 122366889998876 4777777887765 7
Q ss_pred CCeEEEEECCCCCCCcceee--eccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCC
Q 000054 2343 GINVVVWDTLAPPTSSRASI--TCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGG 2420 (2548)
Q Consensus 2343 DGtVrIWDl~t~~~k~v~sl--~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~ 2420 (2548)
+|.|.+|-+-. +.-...+ ....+.|.+++|+.+ |+.++....||.|.+=.+. |..+-... -
T Consensus 92 ~GlIiVWmlyk--gsW~EEMiNnRnKSvV~SmsWn~d-------G~kIcIvYeDGavIVGsvd----GNRIwgKe----L 154 (1189)
T KOG2041|consen 92 SGLIIVWMLYK--GSWCEEMINNRNKSVVVSMSWNLD-------GTKICIVYEDGAVIVGSVD----GNRIWGKE----L 154 (1189)
T ss_pred CceEEEEeeec--ccHHHHHhhCcCccEEEEEEEcCC-------CcEEEEEEccCCEEEEeec----cceecchh----c
Confidence 89999999865 3322222 234567889999888 6777777777777554421 11110000 0
Q ss_pred CCccccccccCCCCCC--ccCCCCCceEEEcc-------------------cCCCCCEEEEEEe--------CCCCEEEE
Q 000054 2421 SSINTCAHADAQTGSG--SKPGDQNGMLWYIP-------------------KAHLGSVTRISTV--------PNTSLFLT 2471 (2548)
Q Consensus 2421 s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~-------------------~gH~~~VtsLafS--------PdG~~LaS 2471 (2548)
.......+.+++|.+. .+-.++...+++.. ......|-.+.|. |+...|+.
T Consensus 155 kg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lav 234 (1189)
T KOG2041|consen 155 KGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAV 234 (1189)
T ss_pred chheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEE
Confidence 0111235667777665 44455666666521 1111124444443 46678888
Q ss_pred EeCCCcEEEEECCC-CcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECC
Q 000054 2472 GSKDGDVKLWDAKA-AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGD 2533 (2548)
Q Consensus 2472 GS~DGtIrIWDl~T-gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~D 2533 (2548)
+-..|.+.|-.-.+ .+++- +. .| --+.+..|+++| |+.||.|
T Consensus 235 cy~nGr~QiMR~eND~~Pvv-~d-------------tg------m~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 235 CYANGRMQIMRSENDPEPVV-VD-------------TG------MKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred EEcCceehhhhhcCCCCCeE-Ee-------------cc------cEeecceecCCCcEEEEccCc
Confidence 88888887764332 22221 10 01 124566899999 7777765
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00025 Score=92.69 Aligned_cols=192 Identities=16% Similarity=0.235 Sum_probs=135.5
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEE--cCCCCEEEEEeccCCCCeEE
Q 000054 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYI--TSSGSVIAAAGHSSNGINVV 2347 (2548)
Q Consensus 2270 H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~af--SpdGslLATgG~SS~DGtVr 2347 (2548)
|...-+|++|+-+.+.|+.|+..|.|+++++.+|.... ..++|...|+-+ +.+|....+...+ ..--..
T Consensus 1100 ~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~--------s~ncH~SavT~vePs~dgs~~Ltsss~-S~Plsa 1170 (1516)
T KOG1832|consen 1100 ETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE--------SVNCHQSAVTLVEPSVDGSTQLTSSSS-SSPLSA 1170 (1516)
T ss_pred cccceeeEEeecCCceEEeeeccceEEEEEccCccccc--------cccccccccccccccCCcceeeeeccc-cCchHH
Confidence 44789999999999999999999999999999986432 267888888764 4478877775421 233578
Q ss_pred EEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccc
Q 000054 2348 VWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCA 2427 (2548)
Q Consensus 2348 IWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~ 2427 (2548)
+|++.. .+..++++. .-.++.|+.. ...-+.|.....+.+|| .+++..+.+..++..........
T Consensus 1171 LW~~~s-~~~~~Hsf~----ed~~vkFsn~-------~q~r~~gt~~d~a~~YD---vqT~~~l~tylt~~~~~~y~~n~ 1235 (1516)
T KOG1832|consen 1171 LWDASS-TGGPRHSFD----EDKAVKFSNS-------LQFRALGTEADDALLYD---VQTCSPLQTYLTDTVTSSYSNNL 1235 (1516)
T ss_pred Hhcccc-ccCcccccc----ccceeehhhh-------HHHHHhcccccceEEEe---cccCcHHHHhcCcchhhhhhccc
Confidence 999875 355666664 3456777765 33445555567789999 77787777754555555555677
Q ss_pred cccCCCCCCccCCCCCceEEEcccC---CC----CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000054 2428 HADAQTGSGSKPGDQNGMLWYIPKA---HL----GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2428 vafSpdGk~v~s~D~sv~Iwdi~~g---H~----~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
+.|+|+..++- +++.+||+... |. ..-..-.|+|+|.-++.-++ |||++|.+++++.+
T Consensus 1236 a~FsP~D~LIl---ndGvLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1236 AHFSPCDTLIL---NDGVLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVP 1300 (1516)
T ss_pred cccCCCcceEe---eCceeeeeccHHHHhhhhhheecccccccCCCceEEeech-----hhhhHHHHHHhcCc
Confidence 88999887743 35678886432 11 01112359999998887764 89999998887765
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.047 Score=68.86 Aligned_cols=196 Identities=17% Similarity=0.172 Sum_probs=126.6
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEE---EE-Ecc-CCCEEEEEeCCCcEEEEEcCCC
Q 000054 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISA---LQ-FDH-YGHRFASAALDGTVCTWQLEVG 2303 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~Vts---Va-FSP-dG~~LaSGS~DGtVrVWDl~tg 2303 (2548)
.||+.++- +.-|.|.+||.++......--.++-.. .......+.- +. |++ +|++++..+. |...+.+...+
T Consensus 276 sDGkrIvF-q~~GdIylydP~td~lekldI~lpl~r--k~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 276 SDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDR--KKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred CCCcEEEE-ecCCcEEEeCCCcCcceeeecCCcccc--ccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 67776654 345679999988765332211111110 0000111111 22 443 6888888776 55656555444
Q ss_pred cccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCC-eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCC
Q 000054 2304 GRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGI-NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLG 2380 (2548)
Q Consensus 2304 k~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DG-tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg 2380 (2548)
-.+ --+|...|.. +..+++-++.|. .|| .+-|+|.+. ..+..+...-+.|.++..+++
T Consensus 352 ~~i----------qv~~~~~VrY~r~~~~~e~~vigt---~dgD~l~iyd~~~---~e~kr~e~~lg~I~av~vs~d--- 412 (668)
T COG4946 352 YSI----------QVGKKGGVRYRRIQVDPEGDVIGT---NDGDKLGIYDKDG---GEVKRIEKDLGNIEAVKVSPD--- 412 (668)
T ss_pred eeE----------EcCCCCceEEEEEccCCcceEEec---cCCceEEEEecCC---ceEEEeeCCccceEEEEEcCC---
Confidence 222 1245555653 555666666664 677 899999975 345566677789999999998
Q ss_pred CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEE
Q 000054 2381 SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRI 2460 (2548)
Q Consensus 2381 ~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsL 2460 (2548)
|+.++.+.....+-+.| +.+|.....- +...+-|+..
T Consensus 413 ----GK~~vvaNdr~el~vid---idngnv~~id------------------------------------kS~~~lItdf 449 (668)
T COG4946 413 ----GKKVVVANDRFELWVID---IDNGNVRLID------------------------------------KSEYGLITDF 449 (668)
T ss_pred ----CcEEEEEcCceEEEEEE---ecCCCeeEec------------------------------------ccccceeEEE
Confidence 78899998888888888 4455443221 4456789999
Q ss_pred EEeCCCCEEEEEeCCC----cEEEEECCCCcEEE
Q 000054 2461 STVPNTSLFLTGSKDG----DVKLWDAKAAQLVY 2490 (2548)
Q Consensus 2461 afSPdG~~LaSGS~DG----tIrIWDl~Tgell~ 2490 (2548)
+|||+++++|-+--+| .|+++|+.+++...
T Consensus 450 ~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~ 483 (668)
T COG4946 450 DWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD 483 (668)
T ss_pred EEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence 9999999999886666 68999999887665
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0011 Score=80.62 Aligned_cols=151 Identities=13% Similarity=0.086 Sum_probs=103.0
Q ss_pred EEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccc
Q 000054 2235 LVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESC 2314 (2548)
Q Consensus 2235 ASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~ 2314 (2548)
++.+.+-.|-+-|+.+|....- ...+.|.++.|...++.+..|..+|.|...|++.......- ..
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf------------~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~---~a 292 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSF------------QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGW---CA 292 (425)
T ss_pred ecccccceeEEEEeeccccccc------------ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCc---ce
Confidence 4455566788888887643211 12377999999999999999999999999999865221111 11
Q ss_pred eeccCCcccEEE---EcCCCCEEEEEeccCCCCeEEEEECCCCCCCc---ceeeeccCCCeEEEEEccCCCCCCCCCCEE
Q 000054 2315 LCFSSHAMDVSY---ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS---RASITCHEGGARSISVFDNDLGSGSVSPLI 2388 (2548)
Q Consensus 2315 ~t~~gH~~~V~a---fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~---v~sl~gHs~~VtSLafsP~dlg~gs~g~lL 2388 (2548)
+ .--|...|++ +..+++.+++.+ .+|+|++||.+. .++ +..+.||...-.-+-++-+. ....+
T Consensus 293 ~-rlyh~Ssvtslq~Lq~s~q~LmaS~---M~gkikLyD~R~--~K~~~~V~qYeGHvN~~a~l~~~v~~-----eeg~I 361 (425)
T KOG2695|consen 293 Q-RLYHDSSVTSLQILQFSQQKLMASD---MTGKIKLYDLRA--TKCKKSVMQYEGHVNLSAYLPAHVKE-----EEGSI 361 (425)
T ss_pred E-EEEcCcchhhhhhhccccceEeecc---CcCceeEeeehh--hhcccceeeeeccccccccccccccc-----ccceE
Confidence 1 2246666665 333566666655 899999999986 344 77777876544443333221 24588
Q ss_pred EEEeCCCcEEEEeCCccccCceeeee
Q 000054 2389 VTGGKGGDVGIHDFRYIATGKTKKHK 2414 (2548)
Q Consensus 2389 VSGS~DGtVrLWDLR~l~TGk~l~tl 2414 (2548)
+++|.|...|||. +..|..+.++
T Consensus 362 ~s~GdDcytRiWs---l~~ghLl~ti 384 (425)
T KOG2695|consen 362 FSVGDDCYTRIWS---LDSGHLLCTI 384 (425)
T ss_pred EEccCeeEEEEEe---cccCceeecc
Confidence 8899999999999 5667777665
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.069 Score=68.41 Aligned_cols=246 Identities=12% Similarity=0.128 Sum_probs=144.6
Q ss_pred EEEEEEcCCCCEEEEEECC---------------CeEEEEEcCCCceeEEEeccCCCCC---------------------
Q 000054 2222 TRAFSSHPLRPFFLVGSSN---------------THIYLWEFGKDKATATYGVLPAANV--------------------- 2265 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~D---------------GsVrLWDl~tg~~l~t~~~l~ghs~--------------------- 2265 (2548)
|.-+.|+|.++||.+-+.. +.+.+||..+|..+..+........
T Consensus 74 V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~s 153 (561)
T COG5354 74 VKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSS 153 (561)
T ss_pred ceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCe
Confidence 5888899999999985433 3489999998887666544221100
Q ss_pred -----------CCCCC---CCCeEEEEEccC--CCEEEE-----EeCCCcEEEEEcCCCcccccccCccceeccCCcccE
Q 000054 2266 -----------PPPYA---LASISALQFDHY--GHRFAS-----AALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDV 2324 (2548)
Q Consensus 2266 -----------~~~~H---~~~VtsVaFSPd--G~~LaS-----GS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V 2324 (2548)
..+.| ...|+...|+|. +..|+. .+.++++++|.+..+..+... ++-. ...|
T Consensus 154 l~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk------~lfk-~~~~ 226 (561)
T COG5354 154 LYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK------NLFK-VSGV 226 (561)
T ss_pred EEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeee------eeEe-eccc
Confidence 00111 134666667764 233332 345667777777644322211 1111 1112
Q ss_pred E-EEcCCCCEEEEEec---cC-----CCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCC
Q 000054 2325 S-YITSSGSVIAAAGH---SS-----NGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGG 2395 (2548)
Q Consensus 2325 ~-afSpdGslLATgG~---SS-----~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DG 2395 (2548)
. .|.+.|++++.--. .| ...+++|+++.. ..+.....-.++|..+.|.|.. ..=-+++|-.+-
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e---~~i~V~~~~~~pVhdf~W~p~S-----~~F~vi~g~~pa 298 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE---RSIPVEKDLKDPVHDFTWEPLS-----SRFAVISGYMPA 298 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecc---cccceeccccccceeeeecccC-----CceeEEeccccc
Confidence 1 25666665443210 00 135688888863 3333333557899999999983 112345567899
Q ss_pred cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCC
Q 000054 2396 DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKD 2475 (2548)
Q Consensus 2396 tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~D 2475 (2548)
.+.++|+|. .....+ .++.=..+.|+|.+++++.++-|
T Consensus 299 ~~s~~~lr~----Nl~~~~--------------------------------------Pe~~rNT~~fsp~~r~il~agF~ 336 (561)
T COG5354 299 SVSVFDLRG----NLRFYF--------------------------------------PEQKRNTIFFSPHERYILFAGFD 336 (561)
T ss_pred ceeeccccc----ceEEec--------------------------------------CCcccccccccCcccEEEEecCC
Confidence 999999762 322111 22333467799999999998775
Q ss_pred ---CcEEEEECCCCcEEE-EecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEE--E----CCCcEEEEECCC
Q 000054 2476 ---GDVKLWDAKAAQLVY-HWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSC--G----GDGSVKLIQLED 2543 (2548)
Q Consensus 2476 ---GtIrIWDl~Tgell~-tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSG--S----~DGtIrIWDL~s 2543 (2548)
|.|-+||...+..+. .+ .|-+ ..-+.|+|+| +.+. | .|..|++||+.+
T Consensus 337 nl~gni~i~~~~~rf~~~~~~--------------~~~n------~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 337 NLQGNIEIFDPAGRFKVAGAF--------------NGLN------TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred ccccceEEeccCCceEEEEEe--------------ecCC------ceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 689999988765554 34 2222 2334899999 3333 2 378999999865
Q ss_pred C
Q 000054 2544 Y 2544 (2548)
Q Consensus 2544 g 2544 (2548)
.
T Consensus 397 ~ 397 (561)
T COG5354 397 A 397 (561)
T ss_pred c
Confidence 4
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.079 Score=62.77 Aligned_cols=226 Identities=15% Similarity=0.132 Sum_probs=124.6
Q ss_pred CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccC
Q 000054 2240 NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSS 2319 (2548)
Q Consensus 2240 DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~g 2319 (2548)
+|+|..||..+|+.+-.+..-+. .....+. ..+++..+++++.++.|..||..+|+..-... ..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~--------~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~------~~~ 66 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPG--------IGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFD------LPG 66 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSS--------CSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEE------CSS
T ss_pred CCEEEEEECCCCCEEEEEECCCC--------CCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEee------ccc
Confidence 68899999999998888753110 0222211 22357778888999999999999886432211 111
Q ss_pred CcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee-eccC---CCeEEEEEccCCCCCCCCCCEEEEEeCCC
Q 000054 2320 HAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHE---GGARSISVFDNDLGSGSVSPLIVTGGKGG 2395 (2548)
Q Consensus 2320 H~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-~gHs---~~VtSLafsP~dlg~gs~g~lLVSGS~DG 2395 (2548)
...... .. ++..++++. .++.+..+|..+ ++.+... .... ........... +..++.+..+|
T Consensus 67 ~~~~~~-~~-~~~~v~v~~---~~~~l~~~d~~t--G~~~W~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~g 132 (238)
T PF13360_consen 67 PISGAP-VV-DGGRVYVGT---SDGSLYALDAKT--GKVLWSIYLTSSPPAGVRSSSSPAVD-------GDRLYVGTSSG 132 (238)
T ss_dssp CGGSGE-EE-ETTEEEEEE---TTSEEEEEETTT--SCEEEEEEE-SSCTCSTB--SEEEEE-------TTEEEEEETCS
T ss_pred ccccee-ee-ccccccccc---ceeeeEecccCC--cceeeeeccccccccccccccCceEe-------cCEEEEEeccC
Confidence 111111 11 334444443 577999999776 5555442 2211 11111111111 34888888899
Q ss_pred cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCC
Q 000054 2396 DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKD 2475 (2548)
Q Consensus 2396 tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~D 2475 (2548)
.|..+| ..+|+.+-......... ...+. ....+..-....++ .++.++.+
T Consensus 133 ~l~~~d---~~tG~~~w~~~~~~~~~---------------------~~~~~-----~~~~~~~~~~~~~~-~v~~~~~~ 182 (238)
T PF13360_consen 133 KLVALD---PKTGKLLWKYPVGEPRG---------------------SSPIS-----SFSDINGSPVISDG-RVYVSSGD 182 (238)
T ss_dssp EEEEEE---TTTTEEEEEEESSTT-S---------------------S--EE-----EETTEEEEEECCTT-EEEEECCT
T ss_pred cEEEEe---cCCCcEEEEeecCCCCC---------------------Cccee-----eecccccceEEECC-EEEEEcCC
Confidence 999999 67788766652100000 00000 01112222222244 66777777
Q ss_pred Cc-EEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCcc
Q 000054 2476 GD-VKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2476 Gt-IrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~l 2546 (2548)
|. +.+ |+.+++.+...+ . .+ +.. ....++ ++.++.|+.|..||+.+|..
T Consensus 183 g~~~~~-d~~tg~~~w~~~-~-----------~~--------~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 183 GRVVAV-DLATGEKLWSKP-I-----------SG--------IYS-LPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp SSEEEE-ETTTTEEEEEEC-S-----------S---------ECE-CEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred CeEEEE-ECCCCCEEEEec-C-----------CC--------ccC-CceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 75 555 999999765331 0 11 111 122333 66677899999999999864
|
... |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.027 Score=74.21 Aligned_cols=258 Identities=14% Similarity=0.106 Sum_probs=147.8
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC------------CCEEEEEe
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY------------GHRFASAA 2290 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd------------G~~LaSGS 2290 (2548)
.++.|+|.| ++|-|+ ...|.+-|..+-+.+..+.. |...|+.|+|.|. .-.+|+++
T Consensus 19 ~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~----------h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD 86 (1062)
T KOG1912|consen 19 NAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIEL----------HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD 86 (1062)
T ss_pred cccccCccc-eEEEec-CceEEEEehhhhhhhhcccc----------CccceeEEEeccCCCchhccCccccceeEEecc
Confidence 567777877 445444 45688889877776666532 5588999999873 12578888
Q ss_pred CCCcEEEEEcCCCcccccccCccceeccCCcc---cEEE--EcCCC-CEEEEEeccCCCCeEEEEECCCCCCCcceeeec
Q 000054 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAM---DVSY--ITSSG-SVIAAAGHSSNGINVVVWDTLAPPTSSRASITC 2364 (2548)
Q Consensus 2291 ~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~---~V~a--fSpdG-slLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g 2364 (2548)
..|.|.+||...+..... +..|.. ++++ ..++. .++++-. ...++.+|+..+ ++.+-....
T Consensus 87 ~~GrIil~d~~~~s~~~~--------l~~~~~~~qdl~W~~~rd~Srd~LlaIh---~ss~lvLwntdt--G~k~Wk~~y 153 (1062)
T KOG1912|consen 87 ISGRIILVDFVLASVINW--------LSHSNDSVQDLCWVPARDDSRDVLLAIH---GSSTLVLWNTDT--GEKFWKYDY 153 (1062)
T ss_pred ccCcEEEEEehhhhhhhh--------hcCCCcchhheeeeeccCcchheeEEec---CCcEEEEEEccC--Cceeecccc
Confidence 889999999987643221 233333 3343 23344 3333332 468999999887 555555544
Q ss_pred cCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccc----cCceeeeecCCCCCCCccccccccCCCCCCccCC
Q 000054 2365 HEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIA----TGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPG 2440 (2548)
Q Consensus 2365 Hs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~----TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~ 2440 (2548)
-.....|+.+.|-+ ...+..-+..|.|-+-+.-... .|+..+.. .+ ++. .....+..+.+
T Consensus 154 s~~iLs~f~~DPfd------~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~-sd--~Sd-------l~~lere~at~ 217 (1062)
T KOG1912|consen 154 SHEILSCFRVDPFD------SRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT-SD--HSD-------LAHLERETATG 217 (1062)
T ss_pred CCcceeeeeeCCCC------cceEEEEccCceEEEEeccCCCCCCCCceeEEEe-cC--ccc-------hhhhhhhhhcc
Confidence 45567779998886 6677777778888777742111 11111111 00 000 00000001110
Q ss_pred CCCceEEEcccCCC---CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecE
Q 000054 2441 DQNGMLWYIPKAHL---GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGV 2517 (2548)
Q Consensus 2441 D~sv~Iwdi~~gH~---~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~V 2517 (2548)
+... ...... -..-.++|+|.-+-++-...-..+.|+|++-..++.+.+-+ +|. +
T Consensus 218 ns~t----s~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpie-----------r~~-------a 275 (1062)
T KOG1912|consen 218 NSTT----STPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIE-----------RGG-------A 275 (1062)
T ss_pred cccc----CCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEec-----------cCC-------c
Confidence 0000 000000 01224667886554444456678999999988888877422 121 1
Q ss_pred EEEEEcCCe----EEEEECCCcEEEEECCC
Q 000054 2518 TDIQVVSRG----FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2518 tsLafSPdG----LaSGS~DGtIrIWDL~s 2543 (2548)
.=+.+-|++ |.+.-.||.+.+|.-+.
T Consensus 276 kfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 276 KFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 112455555 88899999999997643
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.21 Score=60.24 Aligned_cols=207 Identities=12% Similarity=0.107 Sum_probs=123.1
Q ss_pred EEEEcC-CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2224 AFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2224 ~VsfSP-dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
+..|.+ ++.++++-...+.|..|+..++.... +.. .....+++...+..++.+..++. .++|..+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~------------~~~~G~~~~~~~g~l~v~~~~~~-~~~d~~~ 69 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDL------------PGPNGMAFDRPDGRLYVADSGGI-AVVDPDT 69 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EES------------SSEEEEEEECTTSEEEEEETTCE-EEEETTT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Eec------------CCCceEEEEccCCEEEEEEcCce-EEEecCC
Confidence 567888 77777787788999999998876543 211 23778888833355666665554 4559887
Q ss_pred CcccccccCccceeccC-CcccEE--EEcCCCCEEEEEeccCC---C--CeEEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000054 2303 GGRSNVRPMESCLCFSS-HAMDVS--YITSSGSVIAAAGHSSN---G--INVVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~g-H~~~V~--afSpdGslLATgG~SS~---D--GtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
++...+.. . .... ...... ++.++|++.++...... . |.|..++.. ++ +..+...-...+.++|
T Consensus 70 g~~~~~~~---~-~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~---~~-~~~~~~~~~~pNGi~~ 141 (246)
T PF08450_consen 70 GKVTVLAD---L-PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD---GK-VTVVADGLGFPNGIAF 141 (246)
T ss_dssp TEEEEEEE---E-ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT---SE-EEEEEEEESSEEEEEE
T ss_pred CcEEEEee---c-cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC---Ce-EEEEecCcccccceEE
Confidence 74322211 0 0011 111222 47899997777531100 0 456666664 22 2333334567789999
Q ss_pred ccCCCCCCCCCC-EEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCC
Q 000054 2375 FDNDLGSGSVSP-LIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAH 2453 (2548)
Q Consensus 2375 sP~dlg~gs~g~-lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH 2453 (2548)
+|+ ++ ++++-+..+.|..+|+.. .+..+... +++--...-
T Consensus 142 s~d-------g~~lyv~ds~~~~i~~~~~~~--~~~~~~~~------------------------------~~~~~~~~~ 182 (246)
T PF08450_consen 142 SPD-------GKTLYVADSFNGRIWRFDLDA--DGGELSNR------------------------------RVFIDFPGG 182 (246)
T ss_dssp ETT-------SSEEEEEETTTTEEEEEEEET--TTCCEEEE------------------------------EEEEE-SSS
T ss_pred CCc-------chheeecccccceeEEEeccc--cccceeee------------------------------eeEEEcCCC
Confidence 999 45 556777888899888531 11111110 111001112
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2454 LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2454 ~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
.+..-.++++.+|++.++.-..+.|.++|.+ |+.+..+
T Consensus 183 ~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i 220 (246)
T PF08450_consen 183 PGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREI 220 (246)
T ss_dssp SCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEE
T ss_pred CcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEE
Confidence 2357789999999999988889999999987 9988877
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.077 Score=69.45 Aligned_cols=138 Identities=12% Similarity=0.058 Sum_probs=80.5
Q ss_pred EEEEEEcCCCCE-EEEEEC---CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCC--Cc
Q 000054 2222 TRAFSSHPLRPF-FLVGSS---NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALD--GT 2294 (2548)
Q Consensus 2222 V~~VsfSPdG~~-LASGS~---DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~D--Gt 2294 (2548)
...-.|+|+|+. ++..+. +..|.++|+.+++...... . .+.+....|+|||+.++.. +.+ ..
T Consensus 190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~----------~g~~~~~~~SPDG~~la~~~~~~g~~~ 258 (419)
T PRK04043 190 NIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-S----------QGMLVVSDVSKDGSKLLLTMAPKGQPD 258 (419)
T ss_pred eEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-C----------CCcEEeeEECCCCCEEEEEEccCCCcE
Confidence 467899999985 554333 4568999998886544331 1 1456678899999877644 334 46
Q ss_pred EEEEEcCCCcccccccCccceeccCCcc-cE-EEEcCCCCEEEEEeccCCCC--eEEEEECCCCCCCcceeeeccCCCeE
Q 000054 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAM-DV-SYITSSGSVIAAAGHSSNGI--NVVVWDTLAPPTSSRASITCHEGGAR 2370 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~~t~~gH~~-~V-~afSpdGslLATgG~SS~DG--tVrIWDl~t~~~k~v~sl~gHs~~Vt 2370 (2548)
|.++|+.++.... +..+.. .+ -.|+|||+.|+.... ..+ .|.+.|+.. ++..+ +..... .
T Consensus 259 Iy~~dl~~g~~~~---------LT~~~~~d~~p~~SPDG~~I~F~Sd--r~g~~~Iy~~dl~~--g~~~r-lt~~g~--~ 322 (419)
T PRK04043 259 IYLYDTNTKTLTQ---------ITNYPGIDVNGNFVEDDKRIVFVSD--RLGYPNIFMKKLNS--GSVEQ-VVFHGK--N 322 (419)
T ss_pred EEEEECCCCcEEE---------cccCCCccCccEECCCCCEEEEEEC--CCCCceEEEEECCC--CCeEe-CccCCC--c
Confidence 7777776664221 111111 12 259999998777641 233 577777764 33212 211111 1
Q ss_pred EEEEccCCCCCCCCCCEEEEEeC
Q 000054 2371 SISVFDNDLGSGSVSPLIVTGGK 2393 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~ 2393 (2548)
...|+|+ ++.++..+.
T Consensus 323 ~~~~SPD-------G~~Ia~~~~ 338 (419)
T PRK04043 323 NSSVSTY-------KNYIVYSSR 338 (419)
T ss_pred CceECCC-------CCEEEEEEc
Confidence 2478998 666665543
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00097 Score=57.14 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=35.4
Q ss_pred CcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEe
Q 000054 2357 SSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHD 2401 (2548)
Q Consensus 2357 k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWD 2401 (2548)
+++..+.+|.+.|++++|+|+ +.+|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~-------~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPD-------GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETT-------SSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecc-------cccceeeCCCCEEEEEC
Confidence 467789999999999999999 78999999999999998
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.037 Score=66.05 Aligned_cols=190 Identities=12% Similarity=0.028 Sum_probs=117.4
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE---Ec-CCCCEEEEEeccCCCCeEEEEECCCCCCCc
Q 000054 2283 GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY---IT-SSGSVIAAAGHSSNGINVVVWDTLAPPTSS 2358 (2548)
Q Consensus 2283 G~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a---fS-pdGslLATgG~SS~DGtVrIWDl~t~~~k~ 2358 (2548)
-.+|+.|+.-|...+|...+.+... +....|..+|.- .. .....+++ |.|.++++.++.....+.
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~-------~~cd~snn~v~~~~r~cd~~~~~~i~----sndht~k~~~~~~~s~~~ 152 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHL-------YQCDVSNNDVTLVKRYCDLKFPLNIA----SNDHTGKTMVVSGDSNKF 152 (344)
T ss_pred ccEEEeccccceeeeecccCcccce-------eeecccccchhhhhhhcccccceeec----cCCcceeEEEEecCcccc
Confidence 4578999999999999988654211 112333343321 11 11223333 378999999887532222
Q ss_pred ceeeeccCC--CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC
Q 000054 2359 RASITCHEG--GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG 2436 (2548)
Q Consensus 2359 v~sl~gHs~--~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~ 2436 (2548)
. .|.. .+.++.++++ +.++++.+....|-.|.+.. .++-+.....
T Consensus 153 ~----~h~~~~~~ns~~~snd-------~~~~~~Vgds~~Vf~y~id~--~sey~~~~~~-------------------- 199 (344)
T KOG4532|consen 153 A----VHNQNLTQNSLHYSND-------PSWGSSVGDSRRVFRYAIDD--ESEYIENIYE-------------------- 199 (344)
T ss_pred e----eeccccceeeeEEcCC-------CceEEEecCCCcceEEEeCC--ccceeeeeEe--------------------
Confidence 1 2333 3788999998 78999999999999998642 2221111100
Q ss_pred ccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-EEEEecccccccccccCcccCCCCceee
Q 000054 2437 SKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQ-LVYHWSKLHERHTFLQPSSRGFGGVVRA 2515 (2548)
Q Consensus 2437 v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tge-ll~tL~~~Hs~hsfl~~tl~GH~~~V~a 2515 (2548)
..-+..=.+..|+.....+|++..||++.|||++... +..+.. .+-..|.+.
T Consensus 200 --------------a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s----------strp~hnGa--- 252 (344)
T KOG4532|consen 200 --------------APTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS----------STRPHHNGA--- 252 (344)
T ss_pred --------------cccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc----------ccCCCCCCc---
Confidence 1112233577899999999999999999999998643 333221 111235543
Q ss_pred cEEEEEEcCCe----EEEEECCCcEEEEECCCC
Q 000054 2516 GVTDIQVVSRG----FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2516 ~VtsLafSPdG----LaSGS~DGtIrIWDL~sg 2544 (2548)
+..+.|++.| |.-.-.-+.+.+-|++++
T Consensus 253 -~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 253 -FRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred -eEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence 4566899877 444445678888888775
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.013 Score=77.85 Aligned_cols=194 Identities=17% Similarity=0.202 Sum_probs=127.8
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEEC
Q 000054 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl 2351 (2548)
+.++|++++ ++.|+-|..+|.|++.+....... ...|... ..+|.++++|+ .||+|.|-.+
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~~----------~~~~s~~----~~~Gey~asCS---~DGkv~I~sl 100 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNPKT----------NFDHSSS----ILEGEYVASCS---DDGKVVIGSL 100 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcccc----------ccccccc----ccCCceEEEec---CCCcEEEeec
Confidence 567777776 788999999999999998643110 1122221 56899999984 9999999998
Q ss_pred CCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccC
Q 000054 2352 LAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADA 2431 (2548)
Q Consensus 2352 ~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafS 2431 (2548)
.++.......+ ..++.+|+++|+- .-..+..+++||.-| +.++.-+.+.....+
T Consensus 101 ~~~~~~~~~df---~rpiksial~Pd~--~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-------------------- 154 (846)
T KOG2066|consen 101 FTDDEITQYDF---KRPIKSIALHPDF--SRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-------------------- 154 (846)
T ss_pred cCCccceeEec---CCcceeEEeccch--hhhhhhheeecCcce-EEEehhhhhcCccce--------------------
Confidence 76433333333 4589999999981 001256899999999 877773322111111
Q ss_pred CCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCC
Q 000054 2432 QTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGG 2511 (2548)
Q Consensus 2432 pdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~ 2511 (2548)
+...-.|+|.++.| .|.++|-++.+| |+|||+.+++.+..++..+.... ...++
T Consensus 155 -----------------~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R--~e~fp---- 208 (846)
T KOG2066|consen 155 -----------------VLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVR--PELFP---- 208 (846)
T ss_pred -----------------eeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCC--cccCC----
Confidence 11345789999999 688999988776 79999999999987754441110 01122
Q ss_pred ceeecEEEEEEcCCeEEEEECCCcEEEEECC
Q 000054 2512 VVRAGVTDIQVVSRGFLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2512 ~V~a~VtsLafSPdGLaSGS~DGtIrIWDL~ 2542 (2548)
..+.|.++..+.-|-..+|+|..+.
T Consensus 209 ------phl~W~~~~~LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 209 ------PHLHWQDEDRLVIGWGDSVKICSIK 233 (846)
T ss_pred ------CceEecCCCeEEEecCCeEEEEEEe
Confidence 2346887773333344567777776
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0089 Score=79.87 Aligned_cols=181 Identities=15% Similarity=0.176 Sum_probs=121.9
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCccee
Q 000054 2282 YGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRAS 2361 (2548)
Q Consensus 2282 dG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~s 2361 (2548)
++..++.|+-...+..+|+++.+..... .-....|.-...+++++.+|. ..|+|.+-|.++ .+.+++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~--------~v~a~~v~imR~Nnr~lf~G~---t~G~V~LrD~~s--~~~iht 212 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTT--------NVSASGVTIMRYNNRNLFCGD---TRGTVFLRDPNS--FETIHT 212 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeee--------eccCCceEEEEecCcEEEeec---ccceEEeecCCc--Cceeee
Confidence 3556788888888888999877543321 111222433445677787774 889999999986 788999
Q ss_pred eeccCCCeEEEEEccCCCCCCCCCCEEEEEeC---------CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCC
Q 000054 2362 ITCHEGGARSISVFDNDLGSGSVSPLIVTGGK---------GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQ 2432 (2548)
Q Consensus 2362 l~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~---------DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSp 2432 (2548)
+.+|++.|..+... |++|+++|. |..|+|||+|++..-..+..
T Consensus 213 ~~aHs~siSDfDv~---------GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~------------------- 264 (1118)
T KOG1275|consen 213 FDAHSGSISDFDVQ---------GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF------------------- 264 (1118)
T ss_pred eeccccceeeeecc---------CCeEEEeecccccccccccchhhhhhhhhhhccCCccc-------------------
Confidence 99999999998865 458888884 67789999986433222211
Q ss_pred CCCCccCCCCCceEEEcccCCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCC-CcE-EEEecccccccccccCcccCC
Q 000054 2433 TGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPN-TSLFLTGSKDGDVKLWDAKA-AQL-VYHWSKLHERHTFLQPSSRGF 2509 (2548)
Q Consensus 2433 dGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPd-G~~LaSGS~DGtIrIWDl~T-gel-l~tL~~~Hs~hsfl~~tl~GH 2509 (2548)
+.++ .-+.|+|. ...++.++..|...+-|..+ +.+ ...+ +
T Consensus 265 --------------------~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~----------------~ 307 (1118)
T KOG1275|consen 265 --------------------PYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVK----------------M 307 (1118)
T ss_pred --------------------ccCc-hhhhhcccccceEEEEecccceeeccccccCCCcccee----------------E
Confidence 1111 34567774 45677788889988888332 122 1111 1
Q ss_pred CCceeecEEEEEEcCCe--EEEEECCCcEEEEE
Q 000054 2510 GGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2510 ~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWD 2540 (2548)
-......+..+++|++| ++-|-.+|.|.+|.
T Consensus 308 v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 308 VNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 11122346778999999 89999999999998
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.018 Score=76.74 Aligned_cols=181 Identities=16% Similarity=0.086 Sum_probs=118.6
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccccccc
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRP 2310 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p 2310 (2548)
+++++-|+-+|.|++.+.+..- ...+ .|... ..+|.+++||+.||+|.+-.+.+++....
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~-~~~~-----------~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~-- 108 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP-KTNF-----------DHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ-- 108 (846)
T ss_pred cceeeeccccceEEEEecCCcc-cccc-----------ccccc------ccCCceEEEecCCCcEEEeeccCCcccee--
Confidence 6789999999999999966432 1111 12122 56799999999999999998877653321
Q ss_pred CccceeccCCcccEEEEcCC-----CCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCC
Q 000054 2311 MESCLCFSSHAMDVSYITSS-----GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVS 2385 (2548)
Q Consensus 2311 ~~s~~t~~gH~~~V~afSpd-----GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g 2385 (2548)
..+..... +.+++|+ .+.+++|| .-| +.++.-+--..+.-..+..-.|.|.++.|..+
T Consensus 109 ----~df~rpik-sial~Pd~~~~~sk~fv~GG---~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~-------- 171 (846)
T KOG2066|consen 109 ----YDFKRPIK-SIALHPDFSRQQSKQFVSGG---MAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN-------- 171 (846)
T ss_pred ----EecCCcce-eEEeccchhhhhhhheeecC---cce-EEEehhhhhcCccceeeecCccceEEEEecCc--------
Confidence 11222222 2345554 56788887 445 77776442111111134445689999999754
Q ss_pred CEEEEEeCCCcEEEEeCCccccCceeeeecC--CCCCCCccccccccCCCCCCccCCCCCceEEEcccCC
Q 000054 2386 PLIVTGGKGGDVGIHDFRYIATGKTKKHKHS--DRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAH 2453 (2548)
Q Consensus 2386 ~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~--~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH 2453 (2548)
+++=++.+| |++|| ..+++.+..+.. .........+.+.|.++.+.+.+...+++|..+.+++
T Consensus 172 -lIAWand~G-v~vyd---~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~I~~~~ 236 (846)
T KOG2066|consen 172 -LIAWANDDG-VKVYD---TPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICSIKKRS 236 (846)
T ss_pred -EEEEecCCC-cEEEe---ccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEEEeccc
Confidence 888887666 89999 555565555422 2233445557788999999999999999988876444
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.3 Score=63.28 Aligned_cols=256 Identities=11% Similarity=0.044 Sum_probs=133.2
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEE-EEEccCCCEEEEEeCCCcEEEEEcCCCcccccc
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISA-LQFDHYGHRFASAALDGTVCTWQLEVGGRSNVR 2309 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~Vts-VaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~ 2309 (2548)
+..++.++.+|.++-+|..+|+.+-.+... +.+.+ -.. .+..++.+..+|.+..+|.++|+..-..
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-----------~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 186 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA-----------GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTV 186 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCC-----------CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeee
Confidence 456777888999999999999887665421 11111 011 2456777888999999999998754322
Q ss_pred cCcc-ceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc--CC-----CeEEEEEccCCCCC
Q 000054 2310 PMES-CLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH--EG-----GARSISVFDNDLGS 2381 (2548)
Q Consensus 2310 p~~s-~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH--s~-----~VtSLafsP~dlg~ 2381 (2548)
+... .....+...++. . ++ .++.++ .++.+...|..+ ++.+-..... .+ ....+..+|-
T Consensus 187 ~~~~~~~~~~~~~sP~v--~-~~-~v~~~~---~~g~v~a~d~~~--G~~~W~~~~~~~~~~~~~~~~~~~~~sP~---- 253 (394)
T PRK11138 187 NLDVPSLTLRGESAPAT--A-FG-GAIVGG---DNGRVSAVLMEQ--GQLIWQQRISQPTGATEIDRLVDVDTTPV---- 253 (394)
T ss_pred cCCCCcccccCCCCCEE--E-CC-EEEEEc---CCCEEEEEEccC--ChhhheeccccCCCccchhcccccCCCcE----
Confidence 1110 000111112221 1 23 344443 678888888765 3332222100 00 0001111111
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEEcccCC-------
Q 000054 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWYIPKAH------- 2453 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwdi~~gH------- 2453 (2548)
-.+..+..++.+|.+..+| ..+|+.+-........ ..... +++. +...++.+..++...+.
T Consensus 254 -v~~~~vy~~~~~g~l~ald---~~tG~~~W~~~~~~~~------~~~~~-~~~vy~~~~~g~l~ald~~tG~~~W~~~~ 322 (394)
T PRK11138 254 -VVGGVVYALAYNGNLVALD---LRSGQIVWKREYGSVN------DFAVD-GGRIYLVDQNDRVYALDTRGGVELWSQSD 322 (394)
T ss_pred -EECCEEEEEEcCCeEEEEE---CCCCCEEEeecCCCcc------CcEEE-CCEEEEEcCCCeEEEEECCCCcEEEcccc
Confidence 0133677778899999999 6677766443111100 01111 1111 33334444333322211
Q ss_pred --CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEE
Q 000054 2454 --LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCG 2531 (2548)
Q Consensus 2454 --~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS 2531 (2548)
.....+... .+..++.++.||.|.+.|..+|+.+.+.+- +... +.+ ...+..+.|+.++
T Consensus 323 ~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~-------------~~~~-~~s---~P~~~~~~l~v~t 383 (394)
T PRK11138 323 LLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV-------------DSSG-FLS---EPVVADDKLLIQA 383 (394)
T ss_pred cCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc-------------CCCc-cee---CCEEECCEEEEEe
Confidence 111111112 356778899999999999999999876620 1111 111 1123333388899
Q ss_pred CCCcEEEEECC
Q 000054 2532 GDGSVKLIQLE 2542 (2548)
Q Consensus 2532 ~DGtIrIWDL~ 2542 (2548)
.||.|..++++
T Consensus 384 ~~G~l~~~~~~ 394 (394)
T PRK11138 384 RDGTVYAITRP 394 (394)
T ss_pred CCceEEEEeCC
Confidence 99999888753
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.11 Score=61.59 Aligned_cols=191 Identities=16% Similarity=0.192 Sum_probs=112.5
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccccc
Q 000054 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNV 2308 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i 2308 (2548)
+++..+++++.++.++.||..+|+.+-.+.. ++. . ... . ...+..++.++.|+.+..+|..+|+..-.
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~-----~--~~~---~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~ 101 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGP-----I--SGA---P-VVDGGRVYVGTSDGSLYALDAKTGKVLWS 101 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSC-----G--GSG---E-EEETTEEEEEETTSEEEEEETTTSCEEEE
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccc-----c--cce---e-eecccccccccceeeeEecccCCcceeee
Confidence 3567788889999999999999998887764 211 0 111 1 22466677788889999999998875432
Q ss_pred ccCccceeccCCc-ccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCC----------eEEEEEccC
Q 000054 2309 RPMESCLCFSSHA-MDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGG----------ARSISVFDN 2377 (2548)
Q Consensus 2309 ~p~~s~~t~~gH~-~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~----------VtSLafsP~ 2377 (2548)
..... ..... ........++..++.+. .++.|..+|.++ ++.+......... +.+-....+
T Consensus 102 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~g~l~~~d~~t--G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (238)
T PF13360_consen 102 IYLTS---SPPAGVRSSSSPAVDGDRLYVGT---SSGKLVALDPKT--GKLLWKYPVGEPRGSSPISSFSDINGSPVISD 173 (238)
T ss_dssp EEE-S---SCTCSTB--SEEEEETTEEEEEE---TCSEEEEEETTT--TEEEEEEESSTT-SS--EEEETTEEEEEECCT
T ss_pred ecccc---ccccccccccCceEecCEEEEEe---ccCcEEEEecCC--CcEEEEeecCCCCCCcceeeecccccceEEEC
Confidence 10000 00001 00011222366677664 689999999886 5655555443311 111111112
Q ss_pred CCCCCCCCCEEEEEeCCCc-EEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCC
Q 000054 2378 DLGSGSVSPLIVTGGKGGD-VGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGS 2456 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGt-VrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~ 2456 (2548)
+ .+..++.+|. +.+ | ..+++.+ |.. . ...
T Consensus 174 -------~-~v~~~~~~g~~~~~-d---~~tg~~~-----------------------------------w~~-~--~~~ 203 (238)
T PF13360_consen 174 -------G-RVYVSSGDGRVVAV-D---LATGEKL-----------------------------------WSK-P--ISG 203 (238)
T ss_dssp -------T-EEEEECCTSSEEEE-E---TTTTEEE-----------------------------------EEE-C--SS-
T ss_pred -------C-EEEEEcCCCeEEEE-E---CCCCCEE-----------------------------------EEe-c--CCC
Confidence 3 6666666665 555 8 4455533 211 1 111
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEE
Q 000054 2457 VTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVY 2490 (2548)
Q Consensus 2457 VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~ 2490 (2548)
+.. ...+++..++.++.|+.|..||+++|+.+.
T Consensus 204 ~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 204 IYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred ccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 222 134678888888899999999999999875
|
... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.18 Score=70.23 Aligned_cols=207 Identities=15% Similarity=0.061 Sum_probs=123.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.++.|..++.-++.+..+|.|.+-|..+...... .. -.+.|.+++|+||+..++..+.++++.+-+-.
T Consensus 71 i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv-g~----------vd~GI~aaswS~Dee~l~liT~~~tll~mT~~ 139 (1265)
T KOG1920|consen 71 IVSVQFLADTNSICVITALGDIILVDPETLELEIV-GN----------VDNGISAASWSPDEELLALITGRQTLLFMTKD 139 (1265)
T ss_pred eEEEEEecccceEEEEecCCcEEEEcccccceeee-ee----------ccCceEEEeecCCCcEEEEEeCCcEEEEEecc
Confidence 68999999999999999999999998776543211 11 12789999999999999999998888664320
Q ss_pred ----CCcc-----------cccccCccceecc------------------------CCcccEEEEcCCCCEEEEEeccC-
Q 000054 2302 ----VGGR-----------SNVRPMESCLCFS------------------------SHAMDVSYITSSGSVIAAAGHSS- 2341 (2548)
Q Consensus 2302 ----tgk~-----------i~i~p~~s~~t~~------------------------gH~~~V~afSpdGslLATgG~SS- 2341 (2548)
..+. +...=......+. .|...| +|..||+++|+.+..+
T Consensus 140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~I-sWRgDg~~fAVs~~~~~ 218 (1265)
T KOG1920|consen 140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSI-SWRGDGEYFAVSFVESE 218 (1265)
T ss_pred ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceE-EEccCCcEEEEEEEecc
Confidence 0000 0000000000011 122122 4778999999843211
Q ss_pred CC-CeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe---CCCcEEEEeCCccccCceeeeecCC
Q 000054 2342 NG-INVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGG---KGGDVGIHDFRYIATGKTKKHKHSD 2417 (2548)
Q Consensus 2342 ~D-GtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS---~DGtVrLWDLR~l~TGk~l~tl~~~ 2417 (2548)
.+ +.|++||... ..-..-..-.+.=.+++|-|. |.++++-. .|+.|.+|.-. |-....+...
T Consensus 219 ~~~RkirV~drEg---~Lns~se~~~~l~~~LsWkPs-------gs~iA~iq~~~sd~~IvffErN----GL~hg~f~l~ 284 (1265)
T KOG1920|consen 219 TGTRKIRVYDREG---ALNSTSEPVEGLQHSLSWKPS-------GSLIAAIQCKTSDSDIVFFERN----GLRHGEFVLP 284 (1265)
T ss_pred CCceeEEEecccc---hhhcccCcccccccceeecCC-------CCeEeeeeecCCCCcEEEEecC----CccccccccC
Confidence 33 7999999861 111111112233457899887 66777654 46678888722 2211111000
Q ss_pred CCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEE---EeCCCcEEEEECCCC
Q 000054 2418 RGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLT---GSKDGDVKLWDAKAA 2486 (2548)
Q Consensus 2418 ~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaS---GS~DGtIrIWDl~Tg 2486 (2548)
+......|..++|+.++..|++ ......|++|-+.+.
T Consensus 285 --------------------------------~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 285 --------------------------------FPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred --------------------------------CcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 0112234888999999988887 444445999987754
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.037 Score=73.04 Aligned_cols=255 Identities=14% Similarity=0.119 Sum_probs=140.8
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCC--CEEEEEeCCCcEEEEEc
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYG--HRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG--~~LaSGS~DGtVrVWDl 2300 (2548)
..++|+|.-+-++-......+.|+|++-..++..+... .+.+.-+.+-|++ ..|+..-.||.+.+|-.
T Consensus 234 a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpie----------r~~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 234 AQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIE----------RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred HhhhcChhhhceEEEEeccceEEEcchhhceeEEEEec----------cCCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 45677776555554555667899998876666655321 2556667777764 56889999999999986
Q ss_pred CCCcccccccCcccee-ccCCcccEE----------EEcCC-CCEEEEEeccCCCCeEEEEECCCCCCCc----------
Q 000054 2301 EVGGRSNVRPMESCLC-FSSHAMDVS----------YITSS-GSVIAAAGHSSNGINVVVWDTLAPPTSS---------- 2358 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t-~~gH~~~V~----------afSpd-GslLATgG~SS~DGtVrIWDl~t~~~k~---------- 2358 (2548)
+........+...... .......++ ...|. .+.++.-- .+|.+.+|.+..+....
T Consensus 304 k~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~---s~g~~~~w~l~~~ri~~~~~s~~iel~ 380 (1062)
T KOG1912|consen 304 KEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLY---SSGDSTFWQLSNGRIHLDYRSSSIELV 380 (1062)
T ss_pred eccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhh---hcchhHHHhhhcCCcCccccccccccc
Confidence 5422111111111000 000000010 11222 22222211 36677778776311000
Q ss_pred -------------------ceeeeccCCCeEEEEEccCCCC----CCCC-------CCEEEEEeCCCcEEEEeCCccccC
Q 000054 2359 -------------------RASITCHEGGARSISVFDNDLG----SGSV-------SPLIVTGGKGGDVGIHDFRYIATG 2408 (2548)
Q Consensus 2359 -------------------v~sl~gHs~~VtSLafsP~dlg----~gs~-------g~lLVSGS~DGtVrLWDLR~l~TG 2408 (2548)
+....+|..+.+++...|-..- +.+. -++++.|...|+|.++| +.++
T Consensus 381 ~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvd---vst~ 457 (1062)
T KOG1912|consen 381 LPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVD---VSTN 457 (1062)
T ss_pred ccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEE---ecch
Confidence 0011135556666555443200 0000 12566677777777777 3333
Q ss_pred ceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEE---------EEeCCCcEE
Q 000054 2409 KTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFL---------TGSKDGDVK 2479 (2548)
Q Consensus 2409 k~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~La---------SGS~DGtIr 2479 (2548)
.....+ ..|.+.|.++.|--..+++- +|+.-+.+.
T Consensus 458 ~v~~~f------------------------------------svht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~ 501 (1062)
T KOG1912|consen 458 AVAASF------------------------------------SVHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLV 501 (1062)
T ss_pred hhhhhh------------------------------------cccccceeeeeeccceeEEEeeeccccccccceeeeEE
Confidence 332222 56899999999976555442 223334677
Q ss_pred EEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000054 2480 LWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2480 IWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
|-|+++|.-.. |+|-.+.-.+.|.-+..|..| ++..-.|.-+.+||+++-
T Consensus 502 vtdLrtGlsk~---------------fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~ 553 (1062)
T KOG1912|consen 502 VTDLRTGLSKR---------------FRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL 553 (1062)
T ss_pred EEEcccccccc---------------cccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence 78888876543 355444445677778888888 778889999999999653
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.01 Score=74.44 Aligned_cols=219 Identities=17% Similarity=0.112 Sum_probs=135.4
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCC-CCe
Q 000054 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSN-GIN 2345 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~-DGt 2345 (2548)
.|.+.|+.+.-. -.+++.+++.||.++.|--..-.- .+-.+.+..|...+. +.+-+|.++.+.+ + |..
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isG-----vEfVKhFraHL~~I~sl~~S~dg~L~~Sv~---d~Dhs 77 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISG-----VEFVKHFRAHLGVILSLAVSYDGWLFRSVE---DPDHS 77 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccc-----eeehhhhHHHHHHHHhhhccccceeEeecc---Ccccc
Confidence 366777776544 467899999999999997543111 112234556665554 3677899999976 5 999
Q ss_pred EEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccc
Q 000054 2346 VVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINT 2425 (2548)
Q Consensus 2346 VrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~ 2425 (2548)
++++|+..-+.-....+..-.+.+..+ .++.+ ....+-++.-.+|.|.++|-+. .......+
T Consensus 78 ~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd----~~s~IAVs~~~sg~i~VvD~~~--d~~q~~~f----------- 139 (558)
T KOG0882|consen 78 VKVFDVENFDMINMIKLVDLPGFAEWV-TSKGD----KISLIAVSLFKSGKIFVVDGFG--DFCQDGYF----------- 139 (558)
T ss_pred eeEEEeeccchhhhcccccCCCceEEe-cCCCC----eeeeEEeecccCCCcEEECCcC--CcCcccee-----------
Confidence 999998752211112222222233222 23321 1122344445789999999431 11111111
Q ss_pred cccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC------CcEEEEeccccccc
Q 000054 2426 CAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA------AQLVYHWSKLHERH 2499 (2548)
Q Consensus 2426 ~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~T------gell~tL~~~Hs~h 2499 (2548)
..-|..+|.++.+.|.+..+++....|.|.-|.... .+....+ .|+.
T Consensus 140 ------------------------kklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~--K~eT- 192 (558)
T KOG0882|consen 140 ------------------------KKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFEL--KHET- 192 (558)
T ss_pred ------------------------cccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccc--cccc-
Confidence 145999999999999999999999999999999872 1222222 1211
Q ss_pred ccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCccc
Q 000054 2500 TFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQHR 2547 (2548)
Q Consensus 2500 sfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~lr 2547 (2548)
++...-+.- +...++.|+|+| +.+-+.|.+|+++++.+|.+.
T Consensus 193 -dLy~f~K~K-----t~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv 236 (558)
T KOG0882|consen 193 -DLYGFPKAK-----TEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV 236 (558)
T ss_pred -hhhcccccc-----cCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence 111111111 234677999999 888889999999999988653
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.095 Score=63.69 Aligned_cols=168 Identities=15% Similarity=0.231 Sum_probs=106.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC------CCEEEEEeCCCcE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY------GHRFASAALDGTV 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd------G~~LaSGS~DGtV 2295 (2548)
.+.++|+||+.+||.+...|+|+++|+...+ +..+. +.+... ..-..+|..+.|-+. ...|++-..+|.+
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~--p~~~~~-~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L 121 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIP--PAMSFP-GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL 121 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcC--cccccC-CccccceeeeEeeccccccccceeEEEEecccee
Confidence 4889999999999999999999999987533 33322 122111 112367888888653 2357777888998
Q ss_pred EEEEcCCCcccccccCcccee--ccC-CcccEE--EEcCCCCEEEEEeccCCCC--------eEEEEECCCCCC------
Q 000054 2296 CTWQLEVGGRSNVRPMESCLC--FSS-HAMDVS--YITSSGSVIAAAGHSSNGI--------NVVVWDTLAPPT------ 2356 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t--~~g-H~~~V~--afSpdGslLATgG~SS~DG--------tVrIWDl~t~~~------ 2356 (2548)
+-|-+..+.... +....+ +.. +...|. .++|..++|++||+...+. -+..|.+-....
T Consensus 122 ~Sy~vs~gt~q~---y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~ 198 (282)
T PF15492_consen 122 RSYLVSVGTNQG---YQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVT 198 (282)
T ss_pred eeEEEEcccCCc---ceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEcc
Confidence 888774432111 111111 222 234454 3788888999888643221 356676532100
Q ss_pred ---C---------cc---ee---e---eccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCC
Q 000054 2357 ---S---------SR---AS---I---TCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFR 2403 (2548)
Q Consensus 2357 ---k---------~v---~s---l---~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR 2403 (2548)
. .. .. + ....+.|..+..+|+ +..||+...+|.|.+|++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd-------g~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 199 SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD-------GSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred ccCccccccccccceeeccceeeeeccccCCCceEEEEECCC-------CCEEEEEEcCCeEEEEecC
Confidence 0 00 00 0 123568889999999 8899999999999999964
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.27 Score=63.74 Aligned_cols=274 Identities=11% Similarity=0.048 Sum_probs=136.2
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeE-EEEEccCCCEEEEEeCCCcEEEEEcCCCcccccc
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASIS-ALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVR 2309 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~Vt-sVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~ 2309 (2548)
+..+.+++.+|.+.-+|..+|+.+-..........-...+...+. .+.. ++..++.++.+|.+..+|.++|+..-..
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 557777888899999999999887665431100000000000000 0111 3567888889999999999998754322
Q ss_pred cCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE-EEEccCCCCCCCCCCEE
Q 000054 2310 PMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS-ISVFDNDLGSGSVSPLI 2388 (2548)
Q Consensus 2310 p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS-LafsP~dlg~gs~g~lL 2388 (2548)
.... ......+. .++ .++.+. .++.+..+|..+ ++.+-........... ..-+|. ..+..+
T Consensus 147 ~~~~----~~~ssP~v---~~~-~v~v~~---~~g~l~ald~~t--G~~~W~~~~~~~~~~~~~~~sP~-----v~~~~v 208 (394)
T PRK11138 147 KVAG----EALSRPVV---SDG-LVLVHT---SNGMLQALNESD--GAVKWTVNLDVPSLTLRGESAPA-----TAFGGA 208 (394)
T ss_pred cCCC----ceecCCEE---ECC-EEEEEC---CCCEEEEEEccC--CCEeeeecCCCCcccccCCCCCE-----EECCEE
Confidence 1100 00111111 134 444443 678899999876 4444333321110000 000111 002256
Q ss_pred EEEeCCCcEEEEeCCccccCceeeeecCCCCCC-Cc--cccccccCC---CCCC-ccCCCCCceEEEcccCCC------C
Q 000054 2389 VTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGS-SI--NTCAHADAQ---TGSG-SKPGDQNGMLWYIPKAHL------G 2455 (2548)
Q Consensus 2389 VSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s-~~--~~~~vafSp---dGk~-v~s~D~sv~Iwdi~~gH~------~ 2455 (2548)
+.++.+|.+..+| ..+|+.+-......... .. ....+..+| ++.. +...++.+..+|...+.. +
T Consensus 209 ~~~~~~g~v~a~d---~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~ 285 (394)
T PRK11138 209 IVGGDNGRVSAVL---MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG 285 (394)
T ss_pred EEEcCCCEEEEEE---ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC
Confidence 7778899999988 55666544321110000 00 000000011 2222 333344444444322211 1
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEECCCc
Q 000054 2456 SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGGDGS 2535 (2548)
Q Consensus 2456 ~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS~DGt 2535 (2548)
....+. ..+..++.++.||.+..+|..+|+.+...+. ..+. ...+. .+..+.++.++.||.
T Consensus 286 ~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~------------~~~~-~~~sp----~v~~g~l~v~~~~G~ 346 (394)
T PRK11138 286 SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSD------------LLHR-LLTAP----VLYNGYLVVGDSEGY 346 (394)
T ss_pred CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccc------------cCCC-cccCC----EEECCEEEEEeCCCE
Confidence 111111 2456777888999999999999988764310 0010 01111 222222778889999
Q ss_pred EEEEECCCCcc
Q 000054 2536 VKLIQLEDYQH 2546 (2548)
Q Consensus 2536 IrIWDL~sg~l 2546 (2548)
|.+.|.++|..
T Consensus 347 l~~ld~~tG~~ 357 (394)
T PRK11138 347 LHWINREDGRF 357 (394)
T ss_pred EEEEECCCCCE
Confidence 99999888753
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.12 Score=64.87 Aligned_cols=73 Identities=14% Similarity=0.183 Sum_probs=61.6
Q ss_pred EEEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCCcEEEE
Q 000054 2221 STRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2221 ~V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DGtVrVW 2298 (2548)
.++.++|+|..+ ++..++.+..|.|.|+.+...+..+.. + ..+++++|.-+ .++++.|..+|.|.+|
T Consensus 195 ~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a----------~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 195 FIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA----------Y-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred hhhhhccCccccceeeeeccCceEEEEecccceeeeheec----------c-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 378999999887 777899999999999999887777643 2 78999999875 6778888999999999
Q ss_pred EcCCCc
Q 000054 2299 QLEVGG 2304 (2548)
Q Consensus 2299 Dl~tgk 2304 (2548)
|++...
T Consensus 264 D~R~~~ 269 (463)
T KOG1645|consen 264 DMRQPE 269 (463)
T ss_pred EccCCC
Confidence 998653
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.88 Score=54.96 Aligned_cols=165 Identities=16% Similarity=0.129 Sum_probs=96.6
Q ss_pred EEEEEEc-CCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC--------
Q 000054 2222 TRAFSSH-PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD-------- 2292 (2548)
Q Consensus 2222 V~~VsfS-PdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D-------- 2292 (2548)
...+.++ +++.+ +.+..++ +.++|..+++....+....+. ......+++++.++|+..++....
T Consensus 42 ~~G~~~~~~~g~l-~v~~~~~-~~~~d~~~g~~~~~~~~~~~~-----~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~ 114 (246)
T PF08450_consen 42 PNGMAFDRPDGRL-YVADSGG-IAVVDPDTGKVTVLADLPDGG-----VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDP 114 (246)
T ss_dssp EEEEEEECTTSEE-EEEETTC-EEEEETTTTEEEEEEEEETTC-----SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGS
T ss_pred CceEEEEccCCEE-EEEEcCc-eEEEecCCCcEEEEeeccCCC-----cccCCCceEEEcCCCCEEEEecCCCccccccc
Confidence 4666777 56554 4445544 555699888655544432111 123678999999999977776544
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCc--ceee---eccCC
Q 000054 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--RASI---TCHEG 2367 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~--v~sl---~gHs~ 2367 (2548)
|.|..++.. ++.... . -.-+...-.+++|+++.++.+. +..+.|..+++....... ...+ ..-.+
T Consensus 115 g~v~~~~~~-~~~~~~------~-~~~~~pNGi~~s~dg~~lyv~d--s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g 184 (246)
T PF08450_consen 115 GSVYRIDPD-GKVTVV------A-DGLGFPNGIAFSPDGKTLYVAD--SFNGRIWRFDLDADGGELSNRRVFIDFPGGPG 184 (246)
T ss_dssp EEEEEEETT-SEEEEE------E-EEESSEEEEEEETTSSEEEEEE--TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSC
T ss_pred cceEEECCC-CeEEEE------e-cCcccccceEECCcchheeecc--cccceeEEEeccccccceeeeeeEEEcCCCCc
Confidence 345555555 321110 0 0011112235899999887765 578889999986532211 1222 22223
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeee
Q 000054 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHK 2414 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl 2414 (2548)
....+++..+ +++.++....+.|.++| .. |+.+..+
T Consensus 185 ~pDG~~vD~~-------G~l~va~~~~~~I~~~~---p~-G~~~~~i 220 (246)
T PF08450_consen 185 YPDGLAVDSD-------GNLWVADWGGGRIVVFD---PD-GKLLREI 220 (246)
T ss_dssp EEEEEEEBTT-------S-EEEEEETTTEEEEEE---TT-SCEEEEE
T ss_pred CCCcceEcCC-------CCEEEEEcCCCEEEEEC---CC-ccEEEEE
Confidence 4788998887 77888888899999999 33 6666554
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.19 E-value=1.6 Score=55.19 Aligned_cols=259 Identities=14% Similarity=0.120 Sum_probs=137.9
Q ss_pred CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe----------CCCcEEEEEcCCCcccc--c
Q 000054 2241 THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA----------LDGTVCTWQLEVGGRSN--V 2308 (2548)
Q Consensus 2241 GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS----------~DGtVrVWDl~tgk~i~--i 2308 (2548)
+.++++|.++++.+..+.. +-.-.+..+|+++.++++. ..-.|.+||..+-.... .
T Consensus 17 ~rv~viD~d~~k~lGmi~~------------g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~ 84 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT------------GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIE 84 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE------------ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEE
T ss_pred ceEEEEECCCCcEEEEeec------------ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEe
Confidence 4799999999988877754 4455677899999988753 23478999998763221 1
Q ss_pred ccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEE
Q 000054 2309 RPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLI 2388 (2548)
Q Consensus 2309 ~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lL 2388 (2548)
.|... ............++.||+++++.-. +--..|.|-|+.. .+.+..+. ..++..+- |.. ..-+
T Consensus 85 iP~k~-R~~~~~~~~~~~ls~dgk~~~V~N~-TPa~SVtVVDl~~--~kvv~ei~--~PGC~~iy--P~~------~~~F 150 (342)
T PF06433_consen 85 IPPKP-RAQVVPYKNMFALSADGKFLYVQNF-TPATSVTVVDLAA--KKVVGEID--TPGCWLIY--PSG------NRGF 150 (342)
T ss_dssp ETTS--B--BS--GGGEEE-TTSSEEEEEEE-SSSEEEEEEETTT--TEEEEEEE--GTSEEEEE--EEE------TTEE
T ss_pred cCCcc-hheecccccceEEccCCcEEEEEcc-CCCCeEEEEECCC--Cceeeeec--CCCEEEEE--ecC------CCce
Confidence 11110 0011112233458889988877643 2566788999875 44444443 23344433 331 3468
Q ss_pred EEEeCCCcEEEEeCCccccCceeeeec-CCCCCCCccccccccCCC-CCC-ccCCCCCceE-------------EEcccC
Q 000054 2389 VTGGKGGDVGIHDFRYIATGKTKKHKH-SDRGGSSINTCAHADAQT-GSG-SKPGDQNGML-------------WYIPKA 2452 (2548)
Q Consensus 2389 VSGS~DGtVrLWDLR~l~TGk~l~tl~-~~~~~s~~~~~~vafSpd-Gk~-v~s~D~sv~I-------------wdi~~g 2452 (2548)
.+-+.||++.-..+. ..|+..+... .......+.....++... +.+ -.+.++.++- |.+...
T Consensus 151 ~~lC~DGsl~~v~Ld--~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~ 228 (342)
T PF06433_consen 151 SMLCGDGSLLTVTLD--ADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTD 228 (342)
T ss_dssp EEEETTSCEEEEEET--STSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-H
T ss_pred EEEecCCceEEEEEC--CCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCc
Confidence 888899999888853 2455442210 000111111111111111 222 1223333322 222210
Q ss_pred ---C----CCCEEEEEEeCCCCEEEEEeC---CC-------cEEEEECCCCcEEEEecccccccccccCcccCCCCceee
Q 000054 2453 ---H----LGSVTRISTVPNTSLFLTGSK---DG-------DVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRA 2515 (2548)
Q Consensus 2453 ---H----~~~VtsLafSPdG~~LaSGS~---DG-------tIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a 2515 (2548)
- .+.-.-+++++....|+..-. +| .|.++|+.+++.+.+++.+ .
T Consensus 229 ~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-------------------~ 289 (342)
T PF06433_consen 229 AEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-------------------H 289 (342)
T ss_dssp HHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-------------------E
T ss_pred cccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-------------------C
Confidence 0 112234667765554444321 22 4788899999999988411 1
Q ss_pred cEEEEEEcCCe---EEE-EECCCcEEEEECCCCcc
Q 000054 2516 GVTDIQVVSRG---FLS-CGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2516 ~VtsLafSPdG---LaS-GS~DGtIrIWDL~sg~l 2546 (2548)
.+.+|+++.+. |++ ...++.+.+||..+|.+
T Consensus 290 ~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 290 PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 24567888887 444 45689999999998853
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.7 Score=61.04 Aligned_cols=74 Identities=16% Similarity=0.194 Sum_probs=59.0
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEE
Q 000054 2452 AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLS 2529 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaS 2529 (2548)
.....|.+++++|+++.|+.|+.||.|.+||...+....+- .. ...+.++|+|+| +++
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~k------a~--------------~~P~~iaWHp~gai~~V 316 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAK------AE--------------FIPTLIAWHPDGAIFVV 316 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeee------ec--------------ccceEEEEcCCCcEEEE
Confidence 46778999999999999999999999999998766333211 11 235678999999 778
Q ss_pred EECCCcEEEEECCCCc
Q 000054 2530 CGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2530 GS~DGtIrIWDL~sg~ 2545 (2548)
|+.-|.+.+||+.-+.
T Consensus 317 ~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 317 GSEQGELQCFDMALSP 332 (545)
T ss_pred EcCCceEEEEEeecCc
Confidence 8888999999986543
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.36 Score=64.39 Aligned_cols=142 Identities=14% Similarity=0.149 Sum_probs=95.7
Q ss_pred eEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2220 V~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
+.-+|++ ..+++++.|+.-|.+++|+-..+.....- ..+..+.+..+..+++..++|.|+..|.|.++.
T Consensus 36 v~lTc~d--st~~~l~~GsS~G~lyl~~R~~~~~~~~~---------~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~q 104 (726)
T KOG3621|consen 36 VKLTCVD--ATEEYLAMGSSAGSVYLYNRHTGEMRKLK---------NEGATGITCVRSVSSVEYLVAAGTASGRVSVFQ 104 (726)
T ss_pred EEEEEee--cCCceEEEecccceEEEEecCchhhhccc---------ccCccceEEEEEecchhHhhhhhcCCceEEeeh
Confidence 3345555 78899999999999999998877654331 122236677777888899999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCC-C-CCcceeeeccCCCeEEEEEc
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAP-P-TSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~-~-~k~v~sl~gHs~~VtSLafs 2375 (2548)
++.+..-... ........|...|++ |++++..+.+|. ..|.|..-.+... - ....+.+....+.|-.+.+.
T Consensus 105 l~~~~p~~~~--~~t~~d~~~~~rVTal~Ws~~~~k~ysGD---~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 105 LNKELPRDLD--YVTPCDKSHKCRVTALEWSKNGMKLYSGD---SQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred hhccCCCcce--eeccccccCCceEEEEEecccccEEeecC---CCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 9864311110 011123346778875 899999999986 6788888777541 0 11233444456677777766
Q ss_pred cC
Q 000054 2376 DN 2377 (2548)
Q Consensus 2376 P~ 2377 (2548)
..
T Consensus 180 q~ 181 (726)
T KOG3621|consen 180 QS 181 (726)
T ss_pred cc
Confidence 44
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.004 Score=80.57 Aligned_cols=205 Identities=18% Similarity=0.181 Sum_probs=120.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEE----eCCCcEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASA----ALDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSG----S~DGtVr 2296 (2548)
+.+..++-+...+++|..+|.|.+-.......- ++. -.++|....++++|++ |.+.||.| ..|..+.
T Consensus 61 cva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-------s~E-~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 61 CVASFYGNDRCILAVGSATGNISLLSVRHPHDS-------SAE-VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred eehhhcCCchhhhhhccccCceEEeecCCcccc-------cce-ecccccccccccccccccHHHHHhhhhhhcccCCcc
Confidence 333344455568889999999999887643221 111 2344668899999998 55666665 2356899
Q ss_pred EEEcCCCcccccccCccceeccCCc--ccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000054 2297 TWQLEVGGRSNVRPMESCLCFSSHA--MDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~--~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
+||+.++-. .|.+..+...+.. ..+.|+-.+.+++.+|. ..+.+.++|++. .+.....-.+..+..+.+
T Consensus 133 Iwdi~s~lt---vPke~~~fs~~~l~gqns~cwlrd~klvlaGm---~sr~~~ifdlRq---s~~~~~svnTk~vqG~tV 203 (783)
T KOG1008|consen 133 IWDINSLLT---VPKESPLFSSSTLDGQNSVCWLRDTKLVLAGM---TSRSVHIFDLRQ---SLDSVSSVNTKYVQGITV 203 (783)
T ss_pred ceecccccC---CCccccccccccccCccccccccCcchhhccc---ccchhhhhhhhh---hhhhhhhhhhhhccccee
Confidence 999987632 2222222111111 12334556777777764 678999999984 222222223445666777
Q ss_pred ccCCCCCCCCCCEEEEEeCCCcEEEEe-CCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCC
Q 000054 2375 FDNDLGSGSVSPLIVTGGKGGDVGIHD-FRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAH 2453 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~DGtVrLWD-LR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH 2453 (2548)
.|-. +.++++-. ||.|.+|| .|.++ ..++.+.. ++ ...
T Consensus 204 dp~~------~nY~cs~~-dg~iAiwD~~rnie--npl~~i~~--------------~~------------------N~~ 242 (783)
T KOG1008|consen 204 DPFS------PNYFCSNS-DGDIAIWDTYRNIE--NPLQIILR--------------NE------------------NKK 242 (783)
T ss_pred cCCC------CCceeccc-cCceeeccchhhhc--cHHHHHhh--------------CC------------------CCc
Confidence 7742 55777766 99999999 33211 11111100 00 111
Q ss_pred CCCEEEEEEeCCC-CEEEEEeC-CCcEEEEECC
Q 000054 2454 LGSVTRISTVPNT-SLFLTGSK-DGDVKLWDAK 2484 (2548)
Q Consensus 2454 ~~~VtsLafSPdG-~~LaSGS~-DGtIrIWDl~ 2484 (2548)
...+..++|.|.. ..+++.+. .++|+.+|+.
T Consensus 243 ~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 243 PKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred ccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 2257889999943 34555554 5689999876
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.96 Score=61.57 Aligned_cols=205 Identities=12% Similarity=0.095 Sum_probs=117.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCC-eEEEEEccCCCEEEEEeCCC-----cE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALAS-ISALQFDHYGHRFASAALDG-----TV 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~-VtsVaFSPdG~~LaSGS~DG-----tV 2295 (2548)
+.|++ +++..++.|+.+|.|.+.+-. -+.+..+ ..+. .. |..+....+.++|++.+.|+ .|
T Consensus 28 isc~~--s~~~~vvigt~~G~V~~Ln~s-~~~~~~f---qa~~-------~siv~~L~~~~~~~~L~sv~Ed~~~np~ll 94 (933)
T KOG2114|consen 28 ISCCS--SSTGSVVIGTADGRVVILNSS-FQLIRGF---QAYE-------QSIVQFLYILNKQNFLFSVGEDEQGNPVLL 94 (933)
T ss_pred eeEEc--CCCceEEEeeccccEEEeccc-ceeeehh---eecc-------hhhhhHhhcccCceEEEEEeecCCCCceEE
Confidence 45544 889999999999988887732 1111223 2221 33 44444444456788877775 48
Q ss_pred EEEEcCCCcccccccCccc---eec----c--CCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCC--CCCCcceeeec
Q 000054 2296 CTWQLEVGGRSNVRPMESC---LCF----S--SHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLA--PPTSSRASITC 2364 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~---~t~----~--gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t--~~~k~v~sl~g 2364 (2548)
++|+++.-+.... |. .. ..+ + .....+.+++.+-+.+|.|= .||.|..+.=+- ..+........
T Consensus 95 kiw~lek~~~n~s-P~-c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf---~nG~V~~~~GDi~RDrgsr~~~~~~ 169 (933)
T KOG2114|consen 95 KIWDLEKVDKNNS-PQ-CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGF---TNGLVICYKGDILRDRGSRQDYSHR 169 (933)
T ss_pred EEecccccCCCCC-cc-eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEe---cCcEEEEEcCcchhccccceeeecc
Confidence 9999975432110 10 11 001 1 11223345777767777764 789988875321 11111112222
Q ss_pred cCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCce--eeeecCCCCCCCccccccccCCCCCCccCCCC
Q 000054 2365 HEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKT--KKHKHSDRGGSSINTCAHADAQTGSGSKPGDQ 2442 (2548)
Q Consensus 2365 Hs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~--l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~ 2442 (2548)
-.++|+.+.+..+ +..++-...-..|.+|.+. |+. ...+
T Consensus 170 ~~~pITgL~~~~d-------~~s~lFv~Tt~~V~~y~l~----gr~p~~~~l---------------------------- 210 (933)
T KOG2114|consen 170 GKEPITGLALRSD-------GKSVLFVATTEQVMLYSLS----GRTPSLKVL---------------------------- 210 (933)
T ss_pred CCCCceeeEEecC-------CceeEEEEecceeEEEEec----CCCcceeee----------------------------
Confidence 3578999998877 3332222334568888843 232 1111
Q ss_pred CceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2443 NGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2443 sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
..|..++.|.++++....|++++ +.-|.+||....++-.+|
T Consensus 211 --------d~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 211 --------DNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred --------ccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence 45777888999988666455544 347899998877777666
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=95.67 E-value=2.4 Score=51.92 Aligned_cols=229 Identities=15% Similarity=0.176 Sum_probs=121.4
Q ss_pred CCCCEEEEEECCCeEEEEEcCC-CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccc
Q 000054 2229 PLRPFFLVGSSNTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSN 2307 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~t-g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~ 2307 (2548)
..++.|+.|+.+| +.+++... ....... +...|..+...++-+.+++-+ ||.+.++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~------------~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL------------KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVS 70 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe------------ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccc
Confidence 4578899999999 99999832 2222222 124599999999877666665 4999999987543221
Q ss_pred ccc-Cccce-----eccCCcccEEEEc----C-CCCEEEEEeccCCCCeEEEEECCCC--CC-CcceeeeccCCCeEEEE
Q 000054 2308 VRP-MESCL-----CFSSHAMDVSYIT----S-SGSVIAAAGHSSNGINVVVWDTLAP--PT-SSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2308 i~p-~~s~~-----t~~gH~~~V~afS----p-dGslLATgG~SS~DGtVrIWDl~t~--~~-k~v~sl~gHs~~VtSLa 2373 (2548)
... ....+ ........+..+. . .+..++++ ..++|.+|....+ .. +....+. -.+.+.++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va----~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~ 145 (275)
T PF00780_consen 71 TSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA----VKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIA 145 (275)
T ss_pred ccccccccccccccccccccCCeeEEeeccccccceEEEEE----ECCEEEEEEEECCcccccceeEEEE-cCCCcEEEE
Confidence 100 00000 0111122333333 2 33455554 4679999887652 12 2334443 357889999
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCC-------CCccccccccCCCCCCccCCCCCceE
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGG-------SSINTCAHADAQTGSGSKPGDQNGML 2446 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~-------s~~~~~~vafSpdGk~v~s~D~sv~I 2446 (2548)
|.++ .++.|..++ ..+.|+. ++.....+...... .......+.--+++.++...++.+..
T Consensus 146 ~~~~---------~i~v~~~~~-f~~idl~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~~g~f 212 (275)
T PF00780_consen 146 FLGN---------KICVGTSKG-FYLIDLN---TGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDNIGVF 212 (275)
T ss_pred EeCC---------EEEEEeCCc-eEEEecC---CCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecceEEE
Confidence 9865 777777555 6778854 33332222101000 00001111111222332222222222
Q ss_pred EEcccCC---------CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000054 2447 WYIPKAH---------LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2447 wdi~~gH---------~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
.+. .|. .....++++ ...||+..+. +.|.||++.+++++++++
T Consensus 213 v~~-~G~~~r~~~i~W~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 213 VNK-NGEPSRKSTIQWSSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred EcC-CCCcCcccEEEcCCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 221 111 123334444 3468877765 459999999999999884
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.13 Score=68.34 Aligned_cols=106 Identities=16% Similarity=0.202 Sum_probs=78.2
Q ss_pred EEEEcCCCCEEEEEE----CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2224 AFSSHPLRPFFLVGS----SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2224 ~VsfSPdG~~LASGS----~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
-.+|||..+++++++ ..|+|.||- ++|++.... ..+.| +++++|+|..-.|+.|-.-|.+.+|.
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V--------t~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~ 87 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV--------TYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQK 87 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc--------cccee---hhhhccChHHHHHhhccccceeEEEe
Confidence 357899999999764 457888875 555533322 23333 67799999999999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTL 2352 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~ 2352 (2548)
..+.+... ....|..++. .|+++|..++++. .-|.|.+|...
T Consensus 88 ~~~~e~ht--------v~~th~a~i~~l~wS~~G~~l~t~d---~~g~v~lwr~d 131 (1416)
T KOG3617|consen 88 TNTTETHT--------VVETHPAPIQGLDWSHDGTVLMTLD---NPGSVHLWRYD 131 (1416)
T ss_pred cCCceeee--------eccCCCCCceeEEecCCCCeEEEcC---CCceeEEEEee
Confidence 87654221 1345666665 5999999999986 67999999876
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.28 Score=66.34 Aligned_cols=191 Identities=9% Similarity=0.057 Sum_probs=116.9
Q ss_pred cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCC-eEEEEEccCCCCCCCCCCEEEEEeCCC-----c
Q 000054 2323 DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGG-ARSISVFDNDLGSGSVSPLIVTGGKGG-----D 2396 (2548)
Q Consensus 2323 ~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~-VtSLafsP~dlg~gs~g~lLVSGS~DG-----t 2396 (2548)
.+.++++++..++.|. .+|.|.+.+-. .+.++.++++... |..+..... ..+|++-+.|+ .
T Consensus 27 ~isc~~s~~~~vvigt---~~G~V~~Ln~s---~~~~~~fqa~~~siv~~L~~~~~-------~~~L~sv~Ed~~~np~l 93 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGT---ADGRVVILNSS---FQLIRGFQAYEQSIVQFLYILNK-------QNFLFSVGEDEQGNPVL 93 (933)
T ss_pred ceeEEcCCCceEEEee---ccccEEEeccc---ceeeehheecchhhhhHhhcccC-------ceEEEEEeecCCCCceE
Confidence 7788999999999985 89988888764 3455788888877 444443333 45788877665 4
Q ss_pred EEEEeCCccccC---cee---eeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEE--c----------ccCCCCC
Q 000054 2397 VGIHDFRYIATG---KTK---KHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWY--I----------PKAHLGS 2456 (2548)
Q Consensus 2397 VrLWDLR~l~TG---k~l---~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwd--i----------~~gH~~~ 2456 (2548)
|++||+...+.. .++ +.+...........+.++++.+-+. +|-.+|.+..+. + ...-..+
T Consensus 94 lkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~p 173 (933)
T KOG2114|consen 94 LKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEP 173 (933)
T ss_pred EEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCC
Confidence 899998654332 344 2222222334455667778887665 445555555543 1 1123569
Q ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCC
Q 000054 2457 VTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDG 2534 (2548)
Q Consensus 2457 VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DG 2534 (2548)
|+++++..++..++-...-..|.+|.+....+.... +..||...+ +..+++.. +++|+ +.
T Consensus 174 ITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~-------------ld~~G~~ln----Css~~~~t~qfIca~-~e 235 (933)
T KOG2114|consen 174 ITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKV-------------LDNNGISLN----CSSFSDGTYQFICAG-SE 235 (933)
T ss_pred ceeeEEecCCceeEEEEecceeEEEEecCCCcceee-------------eccCCccce----eeecCCCCccEEEec-Cc
Confidence 999999988876222223457899998844322221 255654443 33566554 55443 45
Q ss_pred cEEEEECCCC
Q 000054 2535 SVKLIQLEDY 2544 (2548)
Q Consensus 2535 tIrIWDL~sg 2544 (2548)
.+.+|+.+..
T Consensus 236 ~l~fY~sd~~ 245 (933)
T KOG2114|consen 236 FLYFYDSDGR 245 (933)
T ss_pred eEEEEcCCCc
Confidence 6788887653
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.04 Score=72.11 Aligned_cols=70 Identities=11% Similarity=0.201 Sum_probs=59.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.|.+++|+...++.|+.||+|.+||..++.....- +.-..+.++|+|+|..+++|+..|.+.+||+.
T Consensus 262 v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~k------------a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 262 VICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAK------------AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred ceEEecCcccceEEEEecCCeEEEEEcCCCeeeeee------------ecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 688899999999999999999999998876433221 12457899999999999999999999999987
Q ss_pred CC
Q 000054 2302 VG 2303 (2548)
Q Consensus 2302 tg 2303 (2548)
-+
T Consensus 330 Ls 331 (545)
T PF11768_consen 330 LS 331 (545)
T ss_pred cC
Confidence 44
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.48 E-value=2.7 Score=50.85 Aligned_cols=67 Identities=15% Similarity=0.223 Sum_probs=51.9
Q ss_pred CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeE-EEEEccCCCEEEEEeCCCcEEEEEcCCCcccc
Q 000054 2230 LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASIS-ALQFDHYGHRFASAALDGTVCTWQLEVGGRSN 2307 (2548)
Q Consensus 2230 dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~Vt-sVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~ 2307 (2548)
-|++++.|...|.+++-+..+|+....+... +.|. .-...+++..+..|+.|++....|..+..++.
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~-----------~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVy 129 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVIL-----------ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVY 129 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeeh-----------hhhccceEEcCCCceEEEecCCCcEEEecccccceEE
Confidence 3788999999999999999999877666432 2222 22346689999999999999999998776543
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.03 Score=74.31 Aligned_cols=181 Identities=12% Similarity=0.113 Sum_probs=103.8
Q ss_pred CCCCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE
Q 000054 2212 DPPATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA 2289 (2548)
Q Consensus 2212 ~p~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG 2289 (2548)
.+...+..++ -+|++|+-+.+.|++|+-.|.|+++++.+|.....+.+ |..+|+-+.=+.+|..+++.
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc----------H~SavT~vePs~dgs~~Lts 1161 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC----------HQSAVTLVEPSVDGSTQLTS 1161 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccc----------cccccccccccCCcceeeee
Confidence 3344444443 68899999999999999999999999999987666543 45667766666666655554
Q ss_pred eCCC--cEEEEEc---------------------------------------CCCcccccccCccceeccCCcccEEEEc
Q 000054 2290 ALDG--TVCTWQL---------------------------------------EVGGRSNVRPMESCLCFSSHAMDVSYIT 2328 (2548)
Q Consensus 2290 S~DG--tVrVWDl---------------------------------------~tgk~i~i~p~~s~~t~~gH~~~V~afS 2328 (2548)
+.-. -..+|++ +++...... .....-.........|+
T Consensus 1162 ss~S~PlsaLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty--lt~~~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1162 SSSSSPLSALWDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY--LTDTVTSSYSNNLAHFS 1239 (1516)
T ss_pred ccccCchHHHhccccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHh--cCcchhhhhhccccccC
Confidence 3322 2344554 333211100 00000000111222378
Q ss_pred CCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccC
Q 000054 2329 SSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATG 2408 (2548)
Q Consensus 2329 pdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TG 2408 (2548)
|+..+|.- || .+||++. .+.++.|..-+..+ .-.|+|. |..++..+ .|||+|. -
T Consensus 1240 P~D~LIln------dG--vLWDvR~--~~aIh~FD~ft~~~-~G~FHP~-------g~eVIINS-----EIwD~RT---F 1293 (1516)
T KOG1832|consen 1240 PCDTLILN------DG--VLWDVRI--PEAIHRFDQFTDYG-GGGFHPS-------GNEVIINS-----EIWDMRT---F 1293 (1516)
T ss_pred CCcceEee------Cc--eeeeecc--HHHHhhhhhheecc-cccccCC-------CceEEeec-----hhhhhHH---H
Confidence 88777765 33 6899987 35566665433222 2246787 66776655 5899764 2
Q ss_pred ceeeeecCCCCCCCccccccccCCCCCC
Q 000054 2409 KTKKHKHSDRGGSSINTCAHADAQTGSG 2436 (2548)
Q Consensus 2409 k~l~tl~~~~~~s~~~~~~vafSpdGk~ 2436 (2548)
+.+++. .....|.+.|+..|..
T Consensus 1294 ~lLh~V------P~Ldqc~VtFNstG~V 1315 (1516)
T KOG1832|consen 1294 KLLHSV------PSLDQCAVTFNSTGDV 1315 (1516)
T ss_pred HHHhcC------ccccceEEEeccCccc
Confidence 333222 1223455667777765
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.16 Score=67.66 Aligned_cols=73 Identities=16% Similarity=0.230 Sum_probs=60.8
Q ss_pred eEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2220 V~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
+.+.+++|||..-.|+.|-.-|.+.+|...+.+.-... ..|...|..+.|+++|..++|+..=|.|.+|.
T Consensus 60 ~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~----------~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 60 VHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVV----------ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWR 129 (1416)
T ss_pred eehhhhccChHHHHHhhccccceeEEEecCCceeeeec----------cCCCCCceeEEecCCCCeEEEcCCCceeEEEE
Confidence 34677999999999999999999999997765433222 23668999999999999999999999999998
Q ss_pred cCC
Q 000054 2300 LEV 2302 (2548)
Q Consensus 2300 l~t 2302 (2548)
...
T Consensus 130 ~d~ 132 (1416)
T KOG3617|consen 130 YDV 132 (1416)
T ss_pred eee
Confidence 763
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.20 E-value=13 Score=48.60 Aligned_cols=115 Identities=16% Similarity=0.152 Sum_probs=69.5
Q ss_pred EEEEEEcCCCCEEEEE-ECCC----eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC---
Q 000054 2222 TRAFSSHPLRPFFLVG-SSNT----HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG--- 2293 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASG-S~DG----sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG--- 2293 (2548)
+..++++|+|+++|.+ +..| .++++|+.+|+.+...-. . ..-..+.|.++++.|+....|.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~--~---------~~~~~~~W~~d~~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE--N---------PKFSSVSWSDDGKGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE--E---------EESEEEEECTTSSEEEEEECSTTTS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc--c---------cccceEEEeCCCCEEEEEEeCcccc
Confidence 4578889999999854 3333 599999999977654211 0 1123499999988876665443
Q ss_pred --------cEEEEEcCCCcccccccCccceeccCCcccE---E-EEcCCCCEEEEEeccCCC-CeEEEEECCC
Q 000054 2294 --------TVCTWQLEVGGRSNVRPMESCLCFSSHAMDV---S-YITSSGSVIAAAGHSSNG-INVVVWDTLA 2353 (2548)
Q Consensus 2294 --------tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V---~-afSpdGslLATgG~SS~D-GtVrIWDl~t 2353 (2548)
.|..|++.++.... ...+......+ . ..+.++++++....+..+ ..+.+.|+..
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d------~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSED------ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG-------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred cccCCCCcEEEEEECCCChHhC------eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 36777777654221 12233333322 2 378899987764433344 5688888865
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.75 E-value=1.3 Score=62.47 Aligned_cols=168 Identities=11% Similarity=0.068 Sum_probs=100.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEc----CC-------------------CceeEEEeccCCCCC-CCC-C-------
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEF----GK-------------------DKATATYGVLPAANV-PPP-Y------- 2269 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl----~t-------------------g~~l~t~~~l~ghs~-~~~-~------- 2269 (2548)
|.+++|+||+.+++..+.++++.+-+. -. |+.-..|++-.+... +.. .
T Consensus 112 I~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~ 191 (1265)
T KOG1920|consen 112 ISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQ 191 (1265)
T ss_pred eEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccc
Confidence 589999999999999888888766432 11 111222322111000 000 0
Q ss_pred --CCCCeEEEEEccCCCEEEEE-----eCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCC
Q 000054 2270 --ALASISALQFDHYGHRFASA-----ALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN 2342 (2548)
Q Consensus 2270 --H~~~VtsVaFSPdG~~LaSG-----S~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~ 2342 (2548)
-.+.=+.|.|--||.++|+. ..-+.|++||-+ |...... . .........+|-|.|.++++-.....
T Consensus 192 ~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~s---e---~~~~l~~~LsWkPsgs~iA~iq~~~s 264 (1265)
T KOG1920|consen 192 IEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTS---E---PVEGLQHSLSWKPSGSLIAAIQCKTS 264 (1265)
T ss_pred hhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhccc---C---cccccccceeecCCCCeEeeeeecCC
Confidence 00122458999999999883 223799999988 4321110 0 11122334568899999999876657
Q ss_pred CCeEEEEECCCC-CCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEE---EeCCCcEEEEeCC
Q 000054 2343 GINVVVWDTLAP-PTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVT---GGKGGDVGIHDFR 2403 (2548)
Q Consensus 2343 DGtVrIWDl~t~-~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVS---GS~DGtVrLWDLR 2403 (2548)
|+.|.++.-+.- .+.....+......|..++|+.+ +..|++ ......|++|-+.
T Consensus 265 d~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~-------sdiLAv~~~~~e~~~v~lwt~~ 322 (1265)
T KOG1920|consen 265 DSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSN-------SDILAVVTSNLENSLVQLWTTG 322 (1265)
T ss_pred CCcEEEEecCCccccccccCCcccccchheeeecCC-------CCceeeeecccccceEEEEEec
Confidence 778999986421 01122223333445999999988 667776 5555569999853
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.017 Score=75.19 Aligned_cols=203 Identities=16% Similarity=0.198 Sum_probs=122.5
Q ss_pred CCeEEEEEccC--CCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcC-CCCEEEEEec-cCCCCe
Q 000054 2272 ASISALQFDHY--GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS-SGSVIAAAGH-SSNGIN 2345 (2548)
Q Consensus 2272 ~~VtsVaFSPd--G~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp-dGslLATgG~-SS~DGt 2345 (2548)
..+.|+++.-+ ...++.|..+|.|.+-.++..... .....+++...+.+ |++ |.+.+|+|-. ...|..
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~ 130 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS 130 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc------cceecccccccccccccccccHHHHHhhhhhhcccCC
Confidence 45667776553 346888999999999888744211 11234555555553 444 4456666421 124667
Q ss_pred EEEEECCCCCCCc--ceeeec-cCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCC
Q 000054 2346 VVVWDTLAPPTSS--RASITC-HEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSS 2422 (2548)
Q Consensus 2346 VrIWDl~t~~~k~--v~sl~g-Hs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~ 2422 (2548)
+.|||+.+.-..+ -..|.+ -..+..+++|..+ .+++.+|...+.+.++|+|+ .+.+..
T Consensus 131 ~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd-------~klvlaGm~sr~~~ifdlRq----s~~~~~-------- 191 (783)
T KOG1008|consen 131 LKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRD-------TKLVLAGMTSRSVHIFDLRQ----SLDSVS-------- 191 (783)
T ss_pred ccceecccccCCCccccccccccccCccccccccC-------cchhhcccccchhhhhhhhh----hhhhhh--------
Confidence 9999987531111 112222 4456778888854 67899999999999999884 111110
Q ss_pred ccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEEC-CC-CcEEEEeccccccc
Q 000054 2423 INTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVP-NTSLFLTGSKDGDVKLWDA-KA-AQLVYHWSKLHERH 2499 (2548)
Q Consensus 2423 ~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSP-dG~~LaSGS~DGtIrIWDl-~T-gell~tL~~~Hs~h 2499 (2548)
.-.+..|..+..+| .+.|+++-. ||.|.+||. +. ..++..+ .|..
T Consensus 192 ----------------------------svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i--~~~~- 239 (783)
T KOG1008|consen 192 ----------------------------SVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQII--LRNE- 239 (783)
T ss_pred ----------------------------hhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHH--hhCC-
Confidence 11233556788888 788887765 999999993 22 2222222 1111
Q ss_pred ccccCcccCCCCceeecEEEEEEcCCe---EEEEECC-CcEEEEECC
Q 000054 2500 TFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGD-GSVKLIQLE 2542 (2548)
Q Consensus 2500 sfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~D-GtIrIWDL~ 2542 (2548)
+.....+..++|.|.. ++++..| ++|+.+++.
T Consensus 240 -----------N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 240 -----------NKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred -----------CCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 1111235677898866 7777765 689998875
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=94.53 E-value=4.4 Score=55.05 Aligned_cols=280 Identities=11% Similarity=0.066 Sum_probs=145.7
Q ss_pred EEEEECCCeEEEEEcCCCceeEEEeccCCCCCCC------------CCC------CCCeEEEEEc-----cCCCEEEEEe
Q 000054 2234 FLVGSSNTHIYLWEFGKDKATATYGVLPAANVPP------------PYA------LASISALQFD-----HYGHRFASAA 2290 (2548)
Q Consensus 2234 LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~------------~~H------~~~VtsVaFS-----PdG~~LaSGS 2290 (2548)
+.+|+..|.|+|+-+.+++.+..+..+....... .++ .+......+| -||++++.-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 4489999999999999988877766553222100 000 0011111111 1577777765
Q ss_pred C-CCcEEEEEcCCCcccccccCcccee-----cc--CCcccEEE-------EcCCCCEEEEEeccCCCCeEEEEECCCCC
Q 000054 2291 L-DGTVCTWQLEVGGRSNVRPMESCLC-----FS--SHAMDVSY-------ITSSGSVIAAAGHSSNGINVVVWDTLAPP 2355 (2548)
Q Consensus 2291 ~-DGtVrVWDl~tgk~i~i~p~~s~~t-----~~--gH~~~V~a-------fSpdGslLATgG~SS~DGtVrIWDl~t~~ 2355 (2548)
. +..|...+++.-++..+......+. +. .++..|.+ +++||+.+.... -..+.+.+.|..+
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~--ey~~~vSvID~et-- 224 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPK--KYRSLFTAVDAET-- 224 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeeccc--ceeEEEEEEECcc--
Confidence 4 4566666665444332221111111 11 23444543 567887665432 2567788888865
Q ss_pred CCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeC----CCcEEEEeCCccccCceeeeecCCCCCCCccccccccC
Q 000054 2356 TSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGK----GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADA 2431 (2548)
Q Consensus 2356 ~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~----DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafS 2431 (2548)
.+....+.- .+....+.++++ +.++.+.+. .+++..-|. .....+..+.. .......
T Consensus 225 meV~~qV~V-dgnpd~v~~spd-------Gk~afvTsyNsE~G~tl~em~a---~e~d~~vvfni--------~~iea~v 285 (635)
T PRK02888 225 MEVAWQVMV-DGNLDNVDTDYD-------GKYAFSTCYNSEEGVTLAEMMA---AERDWVVVFNI--------ARIEEAV 285 (635)
T ss_pred ceEEEEEEe-CCCcccceECCC-------CCEEEEeccCcccCcceeeecc---ccCceEEEEch--------HHHHHhh
Confidence 333333322 223455666776 566666542 223333331 11111111100 0112345
Q ss_pred CCCCCccCCCCCceEEEccc----C--------CCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECCCCcEEEEecccccc
Q 000054 2432 QTGSGSKPGDQNGMLWYIPK----A--------HLGSVTRISTVPNTSLFLTGSK-DGDVKLWDAKAAQLVYHWSKLHER 2498 (2548)
Q Consensus 2432 pdGk~v~s~D~sv~Iwdi~~----g--------H~~~VtsLafSPdG~~LaSGS~-DGtIrIWDl~Tgell~tL~~~Hs~ 2498 (2548)
++|++....++.+.+.|..+ + -......+.++|||+++++++. +.+|.|.|+.+.+....=+ ...+
T Consensus 286 kdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~-~~~~ 364 (635)
T PRK02888 286 KAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK-IKPR 364 (635)
T ss_pred hCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc-CCcc
Confidence 56665333455677777544 1 1224467899999999887765 8999999998755311000 0000
Q ss_pred cccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCC
Q 000054 2499 HTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2499 hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~s 2543 (2548)
........-|-+ -...+|+++| +.|--.|..|..|+++.
T Consensus 365 ~~vvaevevGlG------PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 365 DAVVAEPELGLG------PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ceEEEeeccCCC------cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 000000011221 1234799998 77889999999999875
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.49 E-value=3.4 Score=54.75 Aligned_cols=138 Identities=12% Similarity=0.126 Sum_probs=79.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
...++++|+|+++++ +.||.-.|+.....+.... +.-....|.+ .+.+|+-..+++|.++.--
T Consensus 35 p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~---------------G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF---------------GSGLSFVWSS-RNRYAVLESSSTIKIYKNF 97 (443)
T ss_dssp -SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE---------------EE-SEEEE-T-SSEEEEE-TTS-EEEEETT
T ss_pred CeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc---------------CceeEEEEec-CccEEEEECCCeEEEEEcC
Confidence 578899999999998 6677888888444333222 4456788988 4558888878999996322
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
..... ... ........+.. |.+|...+ ++.|.+||+.+ ++.+..+.. .+|..|.|+++
T Consensus 98 ~~~~~--k~i----~~~~~~~~If~----G~LL~~~~----~~~i~~yDw~~--~~~i~~i~v--~~vk~V~Ws~~---- 155 (443)
T PF04053_consen 98 KNEVV--KSI----KLPFSVEKIFG----GNLLGVKS----SDFICFYDWET--GKLIRRIDV--SAVKYVIWSDD---- 155 (443)
T ss_dssp EE-TT-----------SS-EEEEE-----SSSEEEEE----TTEEEEE-TTT----EEEEESS---E-EEEEE-TT----
T ss_pred ccccc--eEE----cCCcccceEEc----CcEEEEEC----CCCEEEEEhhH--cceeeEEec--CCCcEEEEECC----
Confidence 22110 000 01112233332 88888764 55899999986 566777653 24899999988
Q ss_pred CCCCCEEEEEeCCCcEEEEeC
Q 000054 2382 GSVSPLIVTGGKGGDVGIHDF 2402 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDL 2402 (2548)
+.+++-.+.+ ++.+++.
T Consensus 156 ---g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 156 ---GELVALVTKD-SIYILKY 172 (443)
T ss_dssp ---SSEEEEE-S--SEEEEEE
T ss_pred ---CCEEEEEeCC-eEEEEEe
Confidence 6788877744 7778773
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=94.16 E-value=7.6 Score=49.94 Aligned_cols=99 Identities=12% Similarity=0.159 Sum_probs=60.0
Q ss_pred cCCCCEEEEE---------ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 000054 2228 HPLRPFFLVG---------SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2228 SPdG~~LASG---------S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVW 2298 (2548)
|||+++++.. +..+...|+|+.+++....... ...+....|+|+|+.++... ++.|.++
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-----------~~~~~~~~~sP~g~~~~~v~-~~nly~~ 68 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-----------PPKLQDAKWSPDGKYIAFVR-DNNLYLR 68 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-----------ETTBSEEEE-SSSTEEEEEE-TTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-----------ccccccceeecCCCeeEEEe-cCceEEE
Confidence 5788877753 3446789999998764433211 26788999999999988875 5789999
Q ss_pred EcCCCcccccccCccceeccCC-----------cccEEEEcCCCCEEEEEe
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSH-----------AMDVSYITSSGSVIAAAG 2338 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH-----------~~~V~afSpdGslLATgG 2338 (2548)
+..++....+........+.|- .....+|+|||+.||..-
T Consensus 69 ~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 69 DLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp SSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 8876643322111111111111 123346999999988864
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=94.03 E-value=4.4 Score=53.07 Aligned_cols=229 Identities=15% Similarity=0.133 Sum_probs=109.9
Q ss_pred eEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeE-------------------------EEeccCCCCCC--------
Q 000054 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATA-------------------------TYGVLPAANVP-------- 2266 (2548)
Q Consensus 2220 V~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~-------------------------t~~~l~ghs~~-------- 2266 (2548)
+.|..++|.++..-|++|...|.|.||.+...+... .+.......++
T Consensus 2 ~~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 2 VSVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp --EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred ceEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 457888999999999999999999999987432221 00000000000
Q ss_pred CCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccC-CcccEE-------EEcCCC---CEEE
Q 000054 2267 PPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSS-HAMDVS-------YITSSG---SVIA 2335 (2548)
Q Consensus 2267 ~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~g-H~~~V~-------afSpdG---slLA 2335 (2548)
.....+.|++++.+ |--+++.|..+|.+.|.|++....+....... ..... ....+. .+..|+ -.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~-~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE-SFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG---T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc-cccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 01125889999997 55579999999999999997664332111111 00111 111222 133333 2444
Q ss_pred EEeccCCCCeEEEEECCC-CCCCcc----eeeeccCCCeEEEEEccCCCCC--------------CCCCCEEEEEeCCCc
Q 000054 2336 AAGHSSNGINVVVWDTLA-PPTSSR----ASITCHEGGARSISVFDNDLGS--------------GSVSPLIVTGGKGGD 2396 (2548)
Q Consensus 2336 TgG~SS~DGtVrIWDl~t-~~~k~v----~sl~gHs~~VtSLafsP~dlg~--------------gs~g~lLVSGS~DGt 2396 (2548)
+|. +.|.+.+|.+.- ..+... .....+.+.|..+.....+.|. +..-+.++....+..
T Consensus 160 vGT---n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ 236 (395)
T PF08596_consen 160 VGT---NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESD 236 (395)
T ss_dssp EEE---TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSE
T ss_pred EEe---CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccc
Confidence 543 779999998752 112111 1112455666666533221010 000112333344666
Q ss_pred EEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEE-----eCCCCEEEE
Q 000054 2397 VGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRIST-----VPNTSLFLT 2471 (2548)
Q Consensus 2397 VrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLaf-----SPdG~~LaS 2471 (2548)
+|++. ..+.+..... | ...-.+..+.+ ...+..|++
T Consensus 237 irv~~---~~~~k~~~K~--------------------------------~----~~~~~~~~~~vv~~~~~~~~~~Lv~ 277 (395)
T PF08596_consen 237 IRVFK---PPKSKGAHKS--------------------------------F----DDPFLCSSASVVPTISRNGGYCLVC 277 (395)
T ss_dssp EEEE----TT---EEEEE-------------------------------------SS-EEEEEEEEEEEE-EEEEEEEEE
T ss_pred eEEEe---CCCCccccee--------------------------------e----ccccccceEEEEeecccCCceEEEE
Confidence 77777 3333332221 0 01112223333 235678888
Q ss_pred EeCCCcEEEEECCCCcEEEEe
Q 000054 2472 GSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2472 GS~DGtIrIWDl~Tgell~tL 2492 (2548)
-..+|.|+++.+..-+.+..+
T Consensus 278 l~~~G~i~i~SLP~Lkei~~~ 298 (395)
T PF08596_consen 278 LFNNGSIRIYSLPSLKEIKSV 298 (395)
T ss_dssp EETTSEEEEEETTT--EEEEE
T ss_pred EECCCcEEEEECCCchHhhcc
Confidence 899999999999988888766
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.12 Score=41.14 Aligned_cols=32 Identities=41% Similarity=0.801 Sum_probs=29.9
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000054 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWD 2482 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWD 2482 (2548)
..|...|.++.|+|++.++++++.||.+++||
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 57888999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=93.68 E-value=9.6 Score=46.98 Aligned_cols=212 Identities=12% Similarity=0.103 Sum_probs=103.4
Q ss_pred CCeEEEEEccCCC-EEEEEeCCCcEEEEEcCCCcccccccCccceeccCCc--ccEEEEcCCCCEEEEEeccCCCCeEEE
Q 000054 2272 ASISALQFDHYGH-RFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHA--MDVSYITSSGSVIAAAGHSSNGINVVV 2348 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~-~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~--~~V~afSpdGslLATgG~SS~DGtVrI 2348 (2548)
..++.++|+|+.+ ++++....+.|...+.+ |+.+... .+.+.. ..|. +..++.++++.. .++.+.+
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i------~l~g~~D~EgI~-y~g~~~~vl~~E---r~~~L~~ 90 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRI------PLDGFGDYEGIT-YLGNGRYVLSEE---RDQRLYI 90 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEE------E-SS-SSEEEEE-E-STTEEEEEET---TTTEEEE
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEE------eCCCCCCceeEE-EECCCEEEEEEc---CCCcEEE
Confidence 5699999999755 66666777888777764 4433222 133322 2343 444566666542 5888998
Q ss_pred EECCCCCCCc-c---eeee-----ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCC
Q 000054 2349 WDTLAPPTSS-R---ASIT-----CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRG 2419 (2548)
Q Consensus 2349 WDl~t~~~k~-v---~sl~-----gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~ 2419 (2548)
+++....... . ..+. .++.++-.++|.+. ++.|+.+-...-..++.++....+..+.....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~-------~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~--- 160 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPK-------TNRLFVAKERKPKRLYEVNGFPGGFDLFVSDD--- 160 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETT-------TTEEEEEEESSSEEEEEEESTT-SS--EEEE----
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCC-------CCEEEEEeCCCChhhEEEccccCccceeeccc---
Confidence 8884321111 1 1121 35567899999998 44555566666666776432111111111000
Q ss_pred CCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEecccccc
Q 000054 2420 GSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNT-SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHER 2498 (2548)
Q Consensus 2420 ~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG-~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~ 2498 (2548)
.. |.-.......+.+++++|.. .+++-...+..|.++| .+|+.+..+.-..
T Consensus 161 --------~~-----------------~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~-- 212 (248)
T PF06977_consen 161 --------QD-----------------LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDR-- 212 (248)
T ss_dssp --------HH-----------------HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-ST--
T ss_pred --------cc-----------------cccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCC--
Confidence 00 00001234457899999964 5566666688899999 6788887663111
Q ss_pred cccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEE
Q 000054 2499 HTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLI 2539 (2548)
Q Consensus 2499 hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIW 2539 (2548)
.+.|-...+.. .-.|+++++| |...+.-+...++
T Consensus 213 ------g~~gl~~~~~Q-pEGIa~d~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 213 ------GFHGLSKDIPQ-PEGIAFDPDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp ------TGGG-SS---S-EEEEEE-TT--EEEEETTTEEEEE
T ss_pred ------cccCcccccCC-ccEEEECCCCCEEEEcCCceEEEe
Confidence 11111122322 3567999999 7777776655544
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.54 E-value=1 Score=60.41 Aligned_cols=76 Identities=16% Similarity=0.241 Sum_probs=58.1
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
.....|++..++|.|+..|.|.++.++.+......-.-+.+ ..|...|++++|++++..+++|...|+|.+-.++.
T Consensus 80 ~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d----~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 80 CVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCD----KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred EEEEecchhHhhhhhcCCceEEeehhhccCCCcceeecccc----ccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 44555688889999999999999998874332222111111 22678999999999999999999999999988876
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=93.38 E-value=2.7 Score=53.03 Aligned_cols=183 Identities=15% Similarity=0.141 Sum_probs=103.4
Q ss_pred CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEE---EEccC----CCEEEEEeC----------CCcEEEEEcCCC
Q 000054 2241 THIYLWEFGKDKATATYGVLPAANVPPPYALASISAL---QFDHY----GHRFASAAL----------DGTVCTWQLEVG 2303 (2548)
Q Consensus 2241 GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsV---aFSPd----G~~LaSGS~----------DGtVrVWDl~tg 2303 (2548)
..|++.|..+.+.+.++...+. ..+.++ .+..+ ..++++|.. .|.|.++++...
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~---------E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~ 72 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPN---------EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISES 72 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETT---------EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS
T ss_pred cEEEEEeCCCCeEEEEEECCCC---------ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcc
Confidence 3688899888887777654332 334544 44432 467777643 288999999874
Q ss_pred cccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcc-eeeeccCCCeEEEEEccCCCCCC
Q 000054 2304 GRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR-ASITCHEGGARSISVFDNDLGSG 2382 (2548)
Q Consensus 2304 k~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v-~sl~gHs~~VtSLafsP~dlg~g 2382 (2548)
.... ...... .-....+.|.++.+-+..++++ .++.|.+|++.... +.. .........+.++....+
T Consensus 73 ~~~~-~~l~~i-~~~~~~g~V~ai~~~~~~lv~~----~g~~l~v~~l~~~~-~l~~~~~~~~~~~i~sl~~~~~----- 140 (321)
T PF03178_consen 73 PENN-FKLKLI-HSTEVKGPVTAICSFNGRLVVA----VGNKLYVYDLDNSK-TLLKKAFYDSPFYITSLSVFKN----- 140 (321)
T ss_dssp ------EEEEE-EEEEESS-EEEEEEETTEEEEE----ETTEEEEEEEETTS-SEEEEEEE-BSSSEEEEEEETT-----
T ss_pred cccc-eEEEEE-EEEeecCcceEhhhhCCEEEEe----ecCEEEEEEccCcc-cchhhheecceEEEEEEecccc-----
Confidence 1000 000000 0112234455543323345554 36899999998632 121 111122336777776544
Q ss_pred CCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEE
Q 000054 2383 SVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRIST 2462 (2548)
Q Consensus 2383 s~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLaf 2462 (2548)
+++.|...+.|.++.++. .++.+..+. .......++++.|
T Consensus 141 ----~I~vgD~~~sv~~~~~~~--~~~~l~~va----------------------------------~d~~~~~v~~~~~ 180 (321)
T PF03178_consen 141 ----YILVGDAMKSVSLLRYDE--ENNKLILVA----------------------------------RDYQPRWVTAAEF 180 (321)
T ss_dssp ----EEEEEESSSSEEEEEEET--TTE-EEEEE----------------------------------EESS-BEEEEEEE
T ss_pred ----EEEEEEcccCEEEEEEEc--cCCEEEEEE----------------------------------ecCCCccEEEEEE
Confidence 999999989898885321 122222210 0123456889999
Q ss_pred eCCCCEEEEEeCCCcEEEEECC
Q 000054 2463 VPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2463 SPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
-++++.++.+..+|.+.++...
T Consensus 181 l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 181 LVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp E-SSSEEEEEETTSEEEEEEE-
T ss_pred ecCCcEEEEEcCCCeEEEEEEC
Confidence 8777899999999999998875
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=93.31 E-value=9.1 Score=50.43 Aligned_cols=39 Identities=13% Similarity=0.280 Sum_probs=32.4
Q ss_pred CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2454 LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2454 ~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
.+++..++.||+|+++|.-..+|.+.|.+..-.+.+.++
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~ 254 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEF 254 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEe
Confidence 458999999999999999999999999887666666555
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.16 Score=40.27 Aligned_cols=38 Identities=13% Similarity=0.308 Sum_probs=32.9
Q ss_pred CcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEe
Q 000054 2357 SSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHD 2401 (2548)
Q Consensus 2357 k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWD 2401 (2548)
++...+..|...|.++.|.+. +..+++++.||.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~-------~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPD-------GKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCC-------CCEEEEecCCCeEEEcC
Confidence 345667788999999999987 57999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=93.28 E-value=8.9 Score=48.34 Aligned_cols=164 Identities=16% Similarity=0.129 Sum_probs=90.7
Q ss_pred CCccCCeEEEEEEEcCCCCEEEEE-----ECCCeEEEEEcC-CCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEE
Q 000054 2214 PATVENISTRAFSSHPLRPFFLVG-----SSNTHIYLWEFG-KDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA 2287 (2548)
Q Consensus 2214 ~~tl~gV~V~~VsfSPdG~~LASG-----S~DGsVrLWDl~-tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~La 2287 (2548)
.+++.+| -.|+|||++|.+. +..|.|-|||.. +-+.+..+.. +. -.-..+.+.|||+.|+
T Consensus 49 gRHFyGH----g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s---~G-------IGPHel~l~pDG~tLv 114 (305)
T PF07433_consen 49 GRHFYGH----GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPS---HG-------IGPHELLLMPDGETLV 114 (305)
T ss_pred CCEEecC----EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecC---CC-------cChhhEEEcCCCCEEE
Confidence 4567777 4567999999975 567899999998 4444444432 21 2335678999998888
Q ss_pred EEeC-------CC-----------cEEEEEcCCCcccccccCccceec--cCCcccEE--EEcCCCCEEEEEeccCCCC-
Q 000054 2288 SAAL-------DG-----------TVCTWQLEVGGRSNVRPMESCLCF--SSHAMDVS--YITSSGSVIAAAGHSSNGI- 2344 (2548)
Q Consensus 2288 SGS~-------DG-----------tVrVWDl~tgk~i~i~p~~s~~t~--~gH~~~V~--afSpdGslLATgG~SS~DG- 2344 (2548)
++-. .| ++..-|..+|+.+.. ..+ .-|...+. ++..+|..++..- ..|
T Consensus 115 VANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q------~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q---~qg~ 185 (305)
T PF07433_consen 115 VANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ------VELPPDLHQLSIRHLAVDGDGTVAFAMQ---YQGD 185 (305)
T ss_pred EEcCCCccCcccCceecChhhcCCceEEEecCCCceeee------eecCccccccceeeEEecCCCcEEEEEe---cCCC
Confidence 7622 12 333334444432211 011 11323332 3455554443331 111
Q ss_pred ------eEEEEECCCCCCCcceee-------eccCCCeEEEEEccCCCCCCCCCCEE-EEEeCCCcEEEEeCCccccCce
Q 000054 2345 ------NVVVWDTLAPPTSSRASI-------TCHEGGARSISVFDNDLGSGSVSPLI-VTGGKGGDVGIHDFRYIATGKT 2410 (2548)
Q Consensus 2345 ------tVrIWDl~t~~~k~v~sl-------~gHs~~VtSLafsP~dlg~gs~g~lL-VSGS~DGtVrLWDLR~l~TGk~ 2410 (2548)
-|-+++.. +....+ ..-.+.+-+|+++++ +..+ +|+=..|.+.+|| ..+++.
T Consensus 186 ~~~~~PLva~~~~g----~~~~~~~~p~~~~~~l~~Y~gSIa~~~~-------g~~ia~tsPrGg~~~~~d---~~tg~~ 251 (305)
T PF07433_consen 186 PGDAPPLVALHRRG----GALRLLPAPEEQWRRLNGYIGSIAADRD-------GRLIAVTSPRGGRVAVWD---AATGRL 251 (305)
T ss_pred CCccCCeEEEEcCC----CcceeccCChHHHHhhCCceEEEEEeCC-------CCEEEEECCCCCEEEEEE---CCCCCE
Confidence 12233321 111111 123467889999888 4555 5555788999999 667777
Q ss_pred eeee
Q 000054 2411 KKHK 2414 (2548)
Q Consensus 2411 l~tl 2414 (2548)
+...
T Consensus 252 ~~~~ 255 (305)
T PF07433_consen 252 LGSV 255 (305)
T ss_pred eecc
Confidence 6554
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.08 E-value=3.1 Score=52.87 Aligned_cols=78 Identities=15% Similarity=0.097 Sum_probs=61.3
Q ss_pred eccCCcccEE--EEcCCCC-EEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe
Q 000054 2316 CFSSHAMDVS--YITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGG 2392 (2548)
Q Consensus 2316 t~~gH~~~V~--afSpdGs-lLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS 2392 (2548)
.+.++...|. +++|..+ ++..+ |.+..|+|.|+++ ...+..+..| ..+++++|.-++ ..++..|-
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~a---sl~nkiki~dlet--~~~vssy~a~-~~~wSC~wDlde------~h~IYaGl 255 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLA---SLGNKIKIMDLET--SCVVSSYIAY-NQIWSCCWDLDE------RHVIYAGL 255 (463)
T ss_pred cccccchhhhhhccCccccceeeee---ccCceEEEEeccc--ceeeeheecc-CCceeeeeccCC------cceeEEec
Confidence 3556666665 4888777 44454 4899999999987 4566677776 889999999885 77999999
Q ss_pred CCCcEEEEeCCcc
Q 000054 2393 KGGDVGIHDFRYI 2405 (2548)
Q Consensus 2393 ~DGtVrLWDLR~l 2405 (2548)
.+|.|.+||+|+.
T Consensus 256 ~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 256 QNGMVLVYDMRQP 268 (463)
T ss_pred cCceEEEEEccCC
Confidence 9999999999863
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.29 Score=64.53 Aligned_cols=74 Identities=16% Similarity=0.223 Sum_probs=61.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeE-EEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASIS-ALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~Vt-sVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
+..+.|+|..+++|++..+|.|.+..++ .+.+.++.. |...++ +++|.|||+.+|+|-.||+|++.|+
T Consensus 23 i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~----------p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dv 91 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPI----------PGENVTASLCWRPDGKLLAVGFKDGTIRLHDV 91 (665)
T ss_pred eEEEEEcCccchhheeccCCcEEEEEec-cceeEeccC----------CCCccceeeeecCCCCEEEEEecCCeEEEEEc
Confidence 6889999999999999999999999887 555555421 124455 9999999999999999999999999
Q ss_pred CCCccc
Q 000054 2301 EVGGRS 2306 (2548)
Q Consensus 2301 ~tgk~i 2306 (2548)
+++..+
T Consensus 92 e~~~~l 97 (665)
T KOG4640|consen 92 EKGGRL 97 (665)
T ss_pred cCCCce
Confidence 988643
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=92.40 E-value=4.7 Score=56.46 Aligned_cols=141 Identities=16% Similarity=0.139 Sum_probs=85.1
Q ss_pred CCEEEEE-eCCCcEEEEEcCCCcccccccCccceeccCCccc-EEEEcCC--------CCEEEEEeccCCCCeEEEEECC
Q 000054 2283 GHRFASA-ALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMD-VSYITSS--------GSVIAAAGHSSNGINVVVWDTL 2352 (2548)
Q Consensus 2283 G~~LaSG-S~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~-V~afSpd--------GslLATgG~SS~DGtVrIWDl~ 2352 (2548)
.++|+.- .....|.-.|++.|+.+. .+..+... |..+.|+ .+.++.- .++.+..||.|
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~--------eW~~~~~~~v~~~~p~~K~aqlt~e~tflGl----s~n~lfriDpR 560 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVE--------EWKVHDDIPVVDIAPDSKFAQLTNEQTFLGL----SDNSLFRIDPR 560 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEE--------EeecCCCcceeEecccccccccCCCceEEEE----CCCceEEeccC
Confidence 3444433 345678888888886432 13333322 4444332 2233332 68899999999
Q ss_pred CCCCCccee-ee--ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccc
Q 000054 2353 APPTSSRAS-IT--CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHA 2429 (2548)
Q Consensus 2353 t~~~k~v~s-l~--gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~va 2429 (2548)
....+.+.. .. .......|++-..++ .||+|+.+|.||+|| | .|+.-++.
T Consensus 561 ~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G--------~iavgs~~G~IRLyd-~---~g~~AKT~--------------- 613 (794)
T PF08553_consen 561 LSGNKLVDSQSKQYSSKNNFSCFATTEDG--------YIAVGSNKGDIRLYD-R---LGKRAKTA--------------- 613 (794)
T ss_pred CCCCceeeccccccccCCCceEEEecCCc--------eEEEEeCCCcEEeec-c---cchhhhhc---------------
Confidence 753333321 10 223456677765553 999999999999999 2 12221111
Q ss_pred cCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 000054 2430 DAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDA 2483 (2548)
Q Consensus 2430 fSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl 2483 (2548)
+.+-..+|..|..+.||+++++.+. ..+.+++.
T Consensus 614 --------------------lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 614 --------------------LPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred --------------------CCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 1456679999999999999887764 45666664
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.21 E-value=10 Score=46.74 Aligned_cols=233 Identities=15% Similarity=0.191 Sum_probs=125.9
Q ss_pred eEEEEEccC-CCEEEEEeCCCc-EEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEec--cCCCCeEEEE
Q 000054 2274 ISALQFDHY-GHRFASAALDGT-VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGH--SSNGINVVVW 2349 (2548)
Q Consensus 2274 VtsVaFSPd-G~~LaSGS~DGt-VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~--SS~DGtVrIW 2349 (2548)
-..|+|+|. .+-++.+-.-|+ ..++|.++.+...........-+.+|. .|++||.++...-. ...-|.|-||
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG----vfs~dG~~LYATEndfd~~rGViGvY 145 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG----VFSPDGRLLYATENDFDPNRGVIGVY 145 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc----ccCCCCcEEEeecCCCCCCCceEEEE
Confidence 345677774 445556655564 346888776544333222222344444 58999999887531 1134679999
Q ss_pred ECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEE-eCCc----------------cccCceee
Q 000054 2350 DTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIH-DFRY----------------IATGKTKK 2412 (2548)
Q Consensus 2350 Dl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLW-DLR~----------------l~TGk~l~ 2412 (2548)
|.+. ..+.+..+..|.-+...+.+.++ |..++.+ +|-|... |... ..+|..+.
T Consensus 146 d~r~-~fqrvgE~~t~GiGpHev~lm~D-------Grtlvva--nGGIethpdfgR~~lNldsMePSlvlld~atG~lie 215 (366)
T COG3490 146 DARE-GFQRVGEFSTHGIGPHEVTLMAD-------GRTLVVA--NGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE 215 (366)
T ss_pred eccc-ccceecccccCCcCcceeEEecC-------CcEEEEe--CCceecccccCccccchhhcCccEEEEeccccchhh
Confidence 9984 35567788888888889999988 6666654 3445554 3210 12222222
Q ss_pred eecCCCCCCCccccccccCCCCCCccCCC------C------------CceEEEccc----CCCCCEEEEEEeCCCCEEE
Q 000054 2413 HKHSDRGGSSINTCAHADAQTGSGSKPGD------Q------------NGMLWYIPK----AHLGSVTRISTVPNTSLFL 2470 (2548)
Q Consensus 2413 tl~~~~~~s~~~~~~vafSpdGk~v~s~D------~------------sv~Iwdi~~----gH~~~VtsLafSPdG~~La 2470 (2548)
....+.......+..++..+||....... . .....++.+ +....|-+++.+.+..+++
T Consensus 216 kh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~ 295 (366)
T COG3490 216 KHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVA 295 (366)
T ss_pred hccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEE
Confidence 21111111112223334444443311100 0 011111111 1234566787776555555
Q ss_pred EEeC-CCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEECCCcEEEEE
Q 000054 2471 TGSK-DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2471 SGS~-DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS~DGtIrIWD 2540 (2548)
..+- .+...+||..+|..+..-. +.. +..++....|++..+.+|.+.++.
T Consensus 296 lTSP~GN~~vi~da~tG~vv~~a~------------l~d--------aaGva~~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 296 LTSPRGNRAVIWDAATGAVVSEAA------------LPD--------AAGVAAAKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred EecCCCCeEEEEEcCCCcEEeccc------------ccc--------cccceeccCceEEecCCceEEecc
Confidence 5554 4467789999999886331 011 122345556688888889888664
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=92.12 E-value=30 Score=46.65 Aligned_cols=71 Identities=11% Similarity=0.157 Sum_probs=44.5
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeE--EEEEccCCCEEEEEeCCCcEEEEEcCCCccc
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASIS--ALQFDHYGHRFASAALDGTVCTWQLEVGGRS 2306 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~Vt--sVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i 2306 (2548)
+..+..++.++.|+-.|..+|+.+-.+....... .+...+. .+... ++..++.++.||.|..+|.++|+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~----~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~ 133 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPAD----RGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQV 133 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCcc----ccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEe
Confidence 4456677888999999999998776654311100 0000010 11111 2367888899999999999998754
|
The alignment model contains an 8-bladed beta-propeller. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=92.11 E-value=28 Score=47.02 Aligned_cols=29 Identities=21% Similarity=0.508 Sum_probs=25.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000054 2465 NTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2465 dG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
.+..++.|+.||.|+.+|.++|+.+.+++
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 56788899999999999999999998773
|
The alignment model contains an 8-bladed beta-propeller. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=90.91 E-value=53 Score=41.57 Aligned_cols=239 Identities=17% Similarity=0.212 Sum_probs=127.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCC------Cc-eeEEEeccCCCCCCCCCCCCCeEEEEEccCCC----------
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGK------DK-ATATYGVLPAANVPPPYALASISALQFDHYGH---------- 2284 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~t------g~-~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~---------- 2284 (2548)
.+.++++|.+.+-++...-+...+||... .+ .+.++-..++ .......+.+.|+....
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~-----~~~~~~PTGiVfN~~~~F~vt~~g~~~ 99 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPP-----LAAEGTPTGQVFNGSDTFVVSGEGITG 99 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCC-----CCCCCCccEEEEeCCCceEEcCCCccc
Confidence 58899999999999888889999999861 11 1222211011 11235678888875322
Q ss_pred --EEEEEeCCCcEEEEEcCCCcccccccCccceecc-CCcccEE---EEc--CCCCEEEEEeccCCCCeEEEEECCCCCC
Q 000054 2285 --RFASAALDGTVCTWQLEVGGRSNVRPMESCLCFS-SHAMDVS---YIT--SSGSVIAAAGHSSNGINVVVWDTLAPPT 2356 (2548)
Q Consensus 2285 --~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~-gH~~~V~---afS--pdGslLATgG~SS~DGtVrIWDl~t~~~ 2356 (2548)
.++.++.||+|.-|.-..+....+ .....+. .....|. ++. ..+.+|..+.. .+++|.++|-.-..-
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~---~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF--~~g~IDVFd~~f~~~ 174 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMT---RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF--RQGRIDVFKGSFRPP 174 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCccccc---ccEEEEccCCCcceeeeeEEeecCCCceEEEecc--CCCceEEecCccccc
Confidence 367889999999998643321000 0011121 1123343 232 34567777654 689999998653100
Q ss_pred Ccceeeecc-----C--------CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCc
Q 000054 2357 SSRASITCH-----E--------GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSI 2423 (2548)
Q Consensus 2357 k~v~sl~gH-----s--------~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~ 2423 (2548)
..-..+... - +.-.-|.|...+ +....=+.|..-|.|.+||. .|+.++++..
T Consensus 175 ~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd----~~~~d~v~G~G~G~VdvFd~----~G~l~~r~as------- 239 (336)
T TIGR03118 175 PLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQD----ADRNDEVAGAGLGYVNVFTL----NGQLLRRVAS------- 239 (336)
T ss_pred cCCCCccCCCCCCCCCCcceEEECCeEEEEEEecC----CcccccccCCCcceEEEEcC----CCcEEEEecc-------
Confidence 000011100 0 000111111111 00112223334467777774 2455554410
Q ss_pred cccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeC------CCCEEEEEeCCCcEEEEECCCCcEEEEeccccc
Q 000054 2424 NTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVP------NTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHE 2497 (2548)
Q Consensus 2424 ~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSP------dG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs 2497 (2548)
.+.-..-+.|+..| .|.+|+---.||+|.++|..+|+.+..+...
T Consensus 240 ---------------------------~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~-- 290 (336)
T TIGR03118 240 ---------------------------SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDP-- 290 (336)
T ss_pred ---------------------------CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCC--
Confidence 22334455666655 4677776667999999999999988877311
Q ss_pred ccccccCcccCCCCceeecEEEEEEcC
Q 000054 2498 RHTFLQPSSRGFGGVVRAGVTDIQVVS 2524 (2548)
Q Consensus 2498 ~hsfl~~tl~GH~~~V~a~VtsLafSP 2524 (2548)
.|+ ..+-...+.|+|..
T Consensus 291 ---------~G~-pi~i~GLWgL~fGn 307 (336)
T TIGR03118 291 ---------DNH-PVKVDGLWSLTFGN 307 (336)
T ss_pred ---------CCC-eEEecCeEEeeeCC
Confidence 122 12234567888866
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=90.68 E-value=19 Score=47.31 Aligned_cols=125 Identities=18% Similarity=0.160 Sum_probs=70.3
Q ss_pred CeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccc--c-ccC--------------------------------ccceec
Q 000054 2273 SISALQFDHYGHRFASAALDGTVCTWQLEVGGRSN--V-RPM--------------------------------ESCLCF 2317 (2548)
Q Consensus 2273 ~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~--i-~p~--------------------------------~s~~t~ 2317 (2548)
.|+.|.|.++...|++|...|.|.+|.+...+... . .+. .+..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 48999999999999999999999999876442211 0 000 000001
Q ss_pred cCCcccEEEEc-CCCCEEEEEeccCCCCeEEEEECCCCCCCccee--eec------cCCCeEEEEEccCCCCC-CCCCCE
Q 000054 2318 SSHAMDVSYIT-SSGSVIAAAGHSSNGINVVVWDTLAPPTSSRAS--ITC------HEGGARSISVFDNDLGS-GSVSPL 2387 (2548)
Q Consensus 2318 ~gH~~~V~afS-pdGslLATgG~SS~DGtVrIWDl~t~~~k~v~s--l~g------Hs~~VtSLafsP~dlg~-gs~g~l 2387 (2548)
....+.|.++. .|=-++|.|. .+|.+.|.|+|.+ ..+.. +.. ....|+++.|.--.++. +..+..
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy---~~G~l~viD~RGP--avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~ 157 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGY---ESGSLVVIDLRGP--AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSIC 157 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEE---TTSEEEEEETTTT--EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEe---cCCcEEEEECCCC--eEEeeccccccccccccccCeeEEEEEEEecCCCcccceE
Confidence 11234454421 2334666664 8999999999853 32222 111 23468888886332111 112458
Q ss_pred EEEEeCCCcEEEEeC
Q 000054 2388 IVTGGKGGDVGIHDF 2402 (2548)
Q Consensus 2388 LVSGS~DGtVrLWDL 2402 (2548)
+++|...|.+.+|.+
T Consensus 158 L~vGTn~G~v~~fkI 172 (395)
T PF08596_consen 158 LLVGTNSGNVLTFKI 172 (395)
T ss_dssp EEEEETTSEEEEEEE
T ss_pred EEEEeCCCCEEEEEE
Confidence 899999999999986
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=90.41 E-value=0.71 Score=53.45 Aligned_cols=81 Identities=21% Similarity=0.463 Sum_probs=53.3
Q ss_pred eEEeecCCCCcccceeeecCCeEEEE---ecC-------CCCC---CCceeEEEEEEEEe--------------------
Q 000054 98 TSISWSPETPSIGQLAAASENCIFVF---AHD-------SASS---KGSFCWSQNAILVQ-------------------- 144 (2548)
Q Consensus 98 ~~v~~s~~~~~~G~iAa~~~n~v~if---~~~-------~~~~---~~~~~W~~~~~~~~-------------------- 144 (2548)
.||+||.+ |+||++.|+.|.|+ .|. .... .....|..+-.-..
T Consensus 8 ~~l~WS~D----g~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 83 (173)
T PF12657_consen 8 NALAWSED----GQLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEI 83 (173)
T ss_pred cCeeECCC----CCEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceecccccccccc
Confidence 58999999 99999999999999 553 0000 01233322221111
Q ss_pred -cceEEEeeecCCCCe--------eEEecceEEeeccCCCcceEEEEe
Q 000054 145 -GTKVEAIEWTGSGDG--------IVAGGMETVLWKKKNTLWEIAWKF 183 (2548)
Q Consensus 145 -~~~v~~l~W~~~G~~--------ll~~g~~~~lw~~~~~~W~~~W~~ 183 (2548)
...|.+++|+|.|.. +||....|-||...... .--|..
T Consensus 84 s~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~-~~~W~~ 130 (173)
T PF12657_consen 84 SSSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNP-QGEWNR 130 (173)
T ss_pred ccccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCc-cccEee
Confidence 138999999998762 45888899999988543 444443
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=90.14 E-value=5.9 Score=54.30 Aligned_cols=147 Identities=16% Similarity=0.241 Sum_probs=79.4
Q ss_pred CCCEEEEEECC------CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC-----cEEEE
Q 000054 2230 LRPFFLVGSSN------THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG-----TVCTW 2298 (2548)
Q Consensus 2230 dG~~LASGS~D------GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG-----tVrVW 2298 (2548)
+|..+++||.| .++..||..+++-.. ...... ..+...+.. -+|...++||.|| +|-.|
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~-----~R~~~~v~~----l~g~iYavGG~dg~~~l~svE~Y 401 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNT-----KRSDFGVAV----LDGKLYAVGGFDGEKSLNSVECY 401 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccC-----ccccceeEE----ECCEEEEEeccccccccccEEEe
Confidence 45778889888 356778877766322 211111 111111211 2688899999997 57778
Q ss_pred EcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCC---CeEEEEECCCCCCCcceeeeccCCCeEEEEEc
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG---INVVVWDTLAPPTSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~D---GtVrIWDl~t~~~k~v~sl~gHs~~VtSLafs 2375 (2548)
|..+.+-....+. ......+....-+|.+.++||..... ..|..||..+.....+..+..-..... ++..
T Consensus 402 Dp~~~~W~~va~m------~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~ 474 (571)
T KOG4441|consen 402 DPVTNKWTPVAPM------LTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFG-VAVL 474 (571)
T ss_pred cCCCCcccccCCC------CcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccce-EEEE
Confidence 8776643222211 11111111223478888888743222 467889988755555555543222222 3322
Q ss_pred cCCCCCCCCCCEEEEEeCCCc-----EEEEe
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGD-----VGIHD 2401 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGt-----VrLWD 2401 (2548)
. +.+.+.||.||. |..+|
T Consensus 475 ~--------~~iYvvGG~~~~~~~~~VE~yd 497 (571)
T KOG4441|consen 475 N--------GKIYVVGGFDGTSALSSVERYD 497 (571)
T ss_pred C--------CEEEEECCccCCCccceEEEEc
Confidence 2 448888888872 55565
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=90.10 E-value=5.8 Score=55.63 Aligned_cols=153 Identities=15% Similarity=0.148 Sum_probs=91.6
Q ss_pred CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCC-eEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccC
Q 000054 2330 SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGG-ARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATG 2408 (2548)
Q Consensus 2330 dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~-VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TG 2408 (2548)
+.++|+.-. .+...|+-.|+.. ++.+..+..|... |..++ |+.-+.-........|-.+..+..||.|. ...
T Consensus 492 d~~mil~~~--~~~~~ly~mDLe~--GKVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lfriDpR~-~~~ 564 (794)
T PF08553_consen 492 DRNMILLDP--NNPNKLYKMDLER--GKVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLFRIDPRL-SGN 564 (794)
T ss_pred ccceEeecC--CCCCceEEEecCC--CcEEEEeecCCCcceeEec--ccccccccCCCceEEEECCCceEEeccCC-CCC
Confidence 344554432 2457788888876 7888888887754 55554 43100001134667788899999999883 332
Q ss_pred ceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcE
Q 000054 2409 KTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQL 2488 (2548)
Q Consensus 2409 k~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgel 2488 (2548)
+.+... .+. -.......|++.+.+| +||.|+.+|.||+|| +.|..
T Consensus 565 k~v~~~-----------------------------~k~----Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd-~~g~~ 609 (794)
T PF08553_consen 565 KLVDSQ-----------------------------SKQ----YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYD-RLGKR 609 (794)
T ss_pred ceeecc-----------------------------ccc----cccCCCceEEEecCCc-eEEEEeCCCcEEeec-ccchh
Confidence 222111 000 1123456778777666 778999999999999 34433
Q ss_pred EEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEEC
Q 000054 2489 VYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2489 l~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL 2541 (2548)
-++. +.|-+. +|..|..+.|| -+-|..+..+-+++.
T Consensus 610 AKT~-------------lp~lG~----pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 610 AKTA-------------LPGLGD----PIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred hhhc-------------CCCCCC----CeeEEEecCCCcEEEEeecceEEEEEE
Confidence 2222 456564 45677999999 333333456666665
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=89.72 E-value=24 Score=43.62 Aligned_cols=170 Identities=9% Similarity=0.047 Sum_probs=92.7
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
+..++|+|+.. ++++....+.|...+. +|+.+..+.. .+ .+..-.|++..++.++++--.++.+.++++
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l-~g--------~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPL-DG--------FGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE--SS---------SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeC-CC--------CCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 68999999755 5666788888888886 4777777643 21 256788899888877777667899999998
Q ss_pred CCCcc-cccccCccce-ecc-CCcc--cEEEEcCCCCEEEEEeccCCCCeEEEEECCC--CCCCc-ceee------eccC
Q 000054 2301 EVGGR-SNVRPMESCL-CFS-SHAM--DVSYITSSGSVIAAAGHSSNGINVVVWDTLA--PPTSS-RASI------TCHE 2366 (2548)
Q Consensus 2301 ~tgk~-i~i~p~~s~~-t~~-gH~~--~V~afSpdGslLATgG~SS~DGtVrIWDl~t--~~~k~-v~sl------~gHs 2366 (2548)
..... .......... .+. .+.. .-.++++.++.++.+- ...-..++.+.. ..... +... ....
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---CCCChhhEEEccccCccceeecccccccccccee
Confidence 54321 1111000000 011 1222 2246888777666653 444445555432 11111 1111 1234
Q ss_pred CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeee
Q 000054 2367 GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHK 2414 (2548)
Q Consensus 2367 ~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl 2414 (2548)
..+.++.++|.. +.+++.......|-.+|. +|+.+...
T Consensus 171 ~d~S~l~~~p~t------~~lliLS~es~~l~~~d~----~G~~~~~~ 208 (248)
T PF06977_consen 171 RDLSGLSYDPRT------GHLLILSDESRLLLELDR----QGRVVSSL 208 (248)
T ss_dssp S---EEEEETTT------TEEEEEETTTTEEEEE-T----T--EEEEE
T ss_pred ccccceEEcCCC------CeEEEEECCCCeEEEECC----CCCEEEEE
Confidence 567899999985 788999899999999983 35554443
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.69 E-value=1.1 Score=59.30 Aligned_cols=80 Identities=25% Similarity=0.350 Sum_probs=62.4
Q ss_pred CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCce
Q 000054 2366 EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGM 2445 (2548)
Q Consensus 2366 s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~ 2445 (2548)
...+.-+.|+|. -.++|.+..+|.|-+..+. . -+
T Consensus 20 ~~~i~~~ewnP~-------~dLiA~~t~~gelli~R~n----~-----------------------------------qR 53 (665)
T KOG4640|consen 20 PINIKRIEWNPK-------MDLIATRTEKGELLIHRLN----W-----------------------------------QR 53 (665)
T ss_pred ccceEEEEEcCc-------cchhheeccCCcEEEEEec----c-----------------------------------ce
Confidence 346778899998 6799999999988887632 1 24
Q ss_pred EEEcccCCCCCE-EEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2446 LWYIPKAHLGSV-TRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2446 Iwdi~~gH~~~V-tsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
+|.+.. |...+ .+++|.|||++||.|-.||+|++-|+.++..+..+
T Consensus 54 lwtip~-p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 54 LWTIPI-PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF 100 (665)
T ss_pred eEeccC-CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence 555432 33344 59999999999999999999999999999888653
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=89.27 E-value=43 Score=43.01 Aligned_cols=205 Identities=17% Similarity=0.188 Sum_probs=109.7
Q ss_pred EEEcCCCCEEEEE--ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2225 FSSHPLRPFFLVG--SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2225 VsfSPdG~~LASG--S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
++.+.+|+++..- +--.+|.|-|+..++.+..+.. ..+..+-=+ ..+.|.+-+.||++....+..
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~------------PGC~~iyP~-~~~~F~~lC~DGsl~~v~Ld~ 166 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT------------PGCWLIYPS-GNRGFSMLCGDGSLLTVTLDA 166 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG------------TSEEEEEEE-ETTEEEEEETTSCEEEEEETS
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC------------CCEEEEEec-CCCceEEEecCCceEEEEECC
Confidence 4556889888763 5566799999999988888754 223333212 235688999999999999985
Q ss_pred CcccccccCccceeccCCcccEE---EEcCCC-CEEEEEeccCCCCeEEEEECCCCCCCcceeeec----------cCCC
Q 000054 2303 GGRSNVRPMESCLCFSSHAMDVS---YITSSG-SVIAAAGHSSNGINVVVWDTLAPPTSSRASITC----------HEGG 2368 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~---afSpdG-slLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g----------Hs~~ 2368 (2548)
..+..... ...|..-...+. .+...+ .++.+ |.+|.|+--|+.....+....+.- -.++
T Consensus 167 ~Gk~~~~~---t~~F~~~~dp~f~~~~~~~~~~~~~F~----Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG 239 (342)
T PF06433_consen 167 DGKEAQKS---TKVFDPDDDPLFEHPAYSRDGGRLYFV----SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGG 239 (342)
T ss_dssp TSSEEEEE---EEESSTTTS-B-S--EEETTTTEEEEE----BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-S
T ss_pred CCCEeEee---ccccCCCCcccccccceECCCCeEEEE----ecCCEEEEEeccCCcccccCcccccCccccccCcCCcc
Confidence 44332111 122333233332 233333 34444 278888888876421111111110 0122
Q ss_pred eEEEEEccCCCCCCCCCCEEEE--Ee-----CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCC
Q 000054 2369 ARSISVFDNDLGSGSVSPLIVT--GG-----KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGD 2441 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVS--GS-----~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D 2441 (2548)
-.-+++++.. +.+.+. .+ +|+.-.||-+. +++++.+..+
T Consensus 240 ~Q~~A~~~~~------~rlyvLMh~g~~gsHKdpgteVWv~D-~~t~krv~Ri--------------------------- 285 (342)
T PF06433_consen 240 WQLIAYHAAS------GRLYVLMHQGGEGSHKDPGTEVWVYD-LKTHKRVARI--------------------------- 285 (342)
T ss_dssp SS-EEEETTT------TEEEEEEEE--TT-TTS-EEEEEEEE-TTTTEEEEEE---------------------------
T ss_pred eeeeeecccc------CeEEEEecCCCCCCccCCceEEEEEE-CCCCeEEEEE---------------------------
Confidence 3334555441 222221 11 23333333322 4555555444
Q ss_pred CCceEEEcccCCCCCEEEEEEeCCCC-EEEEEe-CCCcEEEEECCCCcEEEEec
Q 000054 2442 QNGMLWYIPKAHLGSVTRISTVPNTS-LFLTGS-KDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2442 ~sv~Iwdi~~gH~~~VtsLafSPdG~-~LaSGS-~DGtIrIWDl~Tgell~tL~ 2493 (2548)
. -...+.+|+.+.+.+ +|++.+ .++.+.|||..+|+.+++++
T Consensus 286 ---------~-l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 286 ---------P-LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp ---------E-EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred ---------e-CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 1 123567888888764 666554 58999999999999999884
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.20 E-value=1.3 Score=61.69 Aligned_cols=103 Identities=25% Similarity=0.324 Sum_probs=70.7
Q ss_pred CCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeC
Q 000054 2385 SPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVP 2464 (2548)
Q Consensus 2385 g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSP 2464 (2548)
+..++.|++.|.|-..|++. . +..++ |+ ..-.++|++++|+.
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~----n-L~~~~-------------------------------~n--e~v~~~Vtsvafn~ 140 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTG----N-LGPLH-------------------------------QN--ERVQGPVTSVAFNQ 140 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhc----c-cchhh-------------------------------cC--CccCCcceeeEecC
Confidence 33789999999999999642 1 11010 00 22457999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEEC
Q 000054 2465 NTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2465 dG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL 2541 (2548)
+|..++.|-.+|.|.+||+..++.++.+. -|+.++.+.+.-...+.+. ++++..-|. +|++
T Consensus 141 dg~~l~~G~~~G~V~v~D~~~~k~l~~i~--------------e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 141 DGSLLLAGLGDGHVTVWDMHRAKILKVIT--------------EHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCceeccccCCCcEEEEEccCCcceeeee--------------ecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 99999999999999999999999988772 2333333444444444444 667766665 6665
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=88.78 E-value=69 Score=39.50 Aligned_cols=121 Identities=12% Similarity=0.062 Sum_probs=75.1
Q ss_pred CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccC
Q 000054 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPM 2311 (2548)
Q Consensus 2232 ~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~ 2311 (2548)
.+++.|+..+.+.--|..+|...-.-.. . .+|-+-+.- -|++++.|...|.+.+.+..+|.......
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il-g----------~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~- 90 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL-G----------VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFV- 90 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh-C----------ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeee-
Confidence 4666788888888888888876533110 0 222222221 47889999999999999999985432110
Q ss_pred ccceeccCCcccEEE-EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEcc
Q 000054 2312 ESCLCFSSHAMDVSY-ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2312 ~s~~t~~gH~~~V~a-fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
.. .+-.+.+ ..+++.+|..+ |.|++.+.-|.++ ..++...++-.+...+-+..|
T Consensus 91 ----~~--~~vk~~a~~d~~~glIycg---shd~~~yalD~~~--~~cVykskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 91 ----IL--ETVKVRAQCDFDGGLIYCG---SHDGNFYALDPKT--YGCVYKSKCGGGTFVSPVIAP 145 (354)
T ss_pred ----eh--hhhccceEEcCCCceEEEe---cCCCcEEEecccc--cceEEecccCCceeccceecC
Confidence 01 1112222 56788888887 4999999999986 566666554333333333344
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.36 E-value=5.7 Score=54.27 Aligned_cols=25 Identities=0% Similarity=0.062 Sum_probs=20.4
Q ss_pred CCCEEEEEeCCC--cEEEEECCCCcEE
Q 000054 2465 NTSLFLTGSKDG--DVKLWDAKAAQLV 2489 (2548)
Q Consensus 2465 dG~~LaSGS~DG--tIrIWDl~Tgell 2489 (2548)
+|++.++||.|| .+-.||..+.+-.
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred CCEEEEEeeecceeehhhcCccccccc
Confidence 788999999988 7788888877654
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=87.57 E-value=14 Score=40.12 Aligned_cols=106 Identities=15% Similarity=0.256 Sum_probs=64.6
Q ss_pred eEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEE
Q 000054 2369 ARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWY 2448 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwd 2448 (2548)
|+++++..-+ +...+.|++|+.|..||+|+= ...+..+
T Consensus 2 V~al~~~d~d---~dg~~eLlvGs~D~~IRvf~~-----~e~~~Ei---------------------------------- 39 (111)
T PF14783_consen 2 VTALCLFDFD---GDGENELLVGSDDFEIRVFKG-----DEIVAEI---------------------------------- 39 (111)
T ss_pred eeEEEEEecC---CCCcceEEEecCCcEEEEEeC-----CcEEEEE----------------------------------
Confidence 5666665532 112468999999999999992 1333232
Q ss_pred cccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--
Q 000054 2449 IPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-- 2526 (2548)
Q Consensus 2449 i~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-- 2526 (2548)
.-.+.|++++-... ..|+.|-.+|+|-+|+-. +.+...+.. | .++ + +....+..+|
T Consensus 40 ---~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRiKSK-------------~-~~~-~-~~~~D~~gdG~~ 97 (111)
T PF14783_consen 40 ---TETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRIKSK-------------N-QVT-S-MAFYDINGDGVP 97 (111)
T ss_pred ---ecccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeeeccC-------------C-CeE-E-EEEEcCCCCCce
Confidence 13456777776655 668889999999999863 333333211 1 111 1 1222344455
Q ss_pred -EEEEECCCcEEE
Q 000054 2527 -FLSCGGDGSVKL 2538 (2548)
Q Consensus 2527 -LaSGS~DGtIrI 2538 (2548)
|++|-.+|.|-+
T Consensus 98 eLI~GwsnGkve~ 110 (111)
T PF14783_consen 98 ELIVGWSNGKVEV 110 (111)
T ss_pred EEEEEecCCeEEe
Confidence 999999998754
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=87.50 E-value=13 Score=50.74 Aligned_cols=197 Identities=10% Similarity=0.011 Sum_probs=110.3
Q ss_pred EcCCCCEEE-EEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC----cEEEEEcC
Q 000054 2227 SHPLRPFFL-VGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG----TVCTWQLE 2301 (2548)
Q Consensus 2227 fSPdG~~LA-SGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG----tVrVWDl~ 2301 (2548)
+.|||+.+. +.-..+.+.+.|.++.+...++.. .+.-..++++++|+++++.+.+. ++..-+..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-----------dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~ 268 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-----------DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAA 268 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEe-----------CCCcccceECCCCCEEEEeccCcccCcceeeeccc
Confidence 346776554 334456778888887776666543 13345678999999998886432 23222221
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCC---CCCcceeeeccCCCeEEEEEccCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAP---PTSSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~---~~k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
..... ..+. ...+..+.++|+....+ ++.|.+.|.++. ....+..+ .-....+.+.++|+
T Consensus 269 e~d~~--------vvfn--i~~iea~vkdGK~~~V~-----gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPD- 331 (635)
T PRK02888 269 ERDWV--------VVFN--IARIEEAVKAGKFKTIG-----GSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPD- 331 (635)
T ss_pred cCceE--------EEEc--hHHHHHhhhCCCEEEEC-----CCEEEEEECCccccCCcceEEEE-ECCCCccceEECCC-
Confidence 11000 0000 00111234578766653 578999998751 11233333 34567788999999
Q ss_pred CCCCCCCCE-EEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCE
Q 000054 2379 LGSGSVSPL-IVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSV 2457 (2548)
Q Consensus 2379 lg~gs~g~l-LVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~V 2457 (2548)
+++ ++++..+.+|.+.|+..+ +.. +. ... .+. ...+-.+ .- .-.-
T Consensus 332 ------GkylyVanklS~tVSVIDv~k~---k~~--~~-~~~-----------~~~---------~~vvaev-ev-GlGP 377 (635)
T PRK02888 332 ------GKYFIANGKLSPTVTVIDVRKL---DDL--FD-GKI-----------KPR---------DAVVAEP-EL-GLGP 377 (635)
T ss_pred ------CCEEEEeCCCCCcEEEEEChhh---hhh--hh-ccC-----------Ccc---------ceEEEee-cc-CCCc
Confidence 555 555567999999996531 110 00 000 000 0000000 00 1112
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 000054 2458 TRISTVPNTSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS~DGtIrIWDl~T 2485 (2548)
.-.+|+++|....|.-.|..|..||+.+
T Consensus 378 LHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 378 LHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ceEEECCCCCEEEeEeecceeEEEehHH
Confidence 3467899999888888999999999875
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=87.47 E-value=17 Score=39.63 Aligned_cols=95 Identities=21% Similarity=0.298 Sum_probs=64.6
Q ss_pred EcCCC-CEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCcc
Q 000054 2327 ITSSG-SVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYI 2405 (2548)
Q Consensus 2327 fSpdG-slLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l 2405 (2548)
+.-+| +.|++| |+|..|++|+-. ..+..+. ..+.|+++..... ..++.+-.+|+|-+|+-
T Consensus 10 ~d~dg~~eLlvG---s~D~~IRvf~~~----e~~~Ei~-e~~~v~~L~~~~~--------~~F~Y~l~NGTVGvY~~--- 70 (111)
T PF14783_consen 10 FDGDGENELLVG---SDDFEIRVFKGD----EIVAEIT-ETDKVTSLCSLGG--------GRFAYALANGTVGVYDR--- 70 (111)
T ss_pred cCCCCcceEEEe---cCCcEEEEEeCC----cEEEEEe-cccceEEEEEcCC--------CEEEEEecCCEEEEEeC---
Confidence 44444 355555 499999999863 3555554 4677888886655 38999999999999992
Q ss_pred ccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEe-CCC---CEEEEEeCCCcEE
Q 000054 2406 ATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTV-PNT---SLFLTGSKDGDVK 2479 (2548)
Q Consensus 2406 ~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafS-PdG---~~LaSGS~DGtIr 2479 (2548)
..++|++...|. +.++++. .++ .-|++|=.+|.|-
T Consensus 71 -------------------------------------~~RlWRiKSK~~--~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 -------------------------------------SQRLWRIKSKNQ--VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -------------------------------------cceeeeeccCCC--eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 135676655454 5566543 333 4788888888764
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.18 E-value=14 Score=49.14 Aligned_cols=135 Identities=16% Similarity=0.135 Sum_probs=73.3
Q ss_pred EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCc
Q 000054 2325 SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRY 2404 (2548)
Q Consensus 2325 ~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~ 2404 (2548)
..++|+|+.++++| ||.-.|+.... .+. . ..+......|.+.+ .+++-...++|.++.-
T Consensus 38 ls~npngr~v~V~g----~geY~iyt~~~--~r~--k---~~G~g~~~vw~~~n--------~yAv~~~~~~I~I~kn-- 96 (443)
T PF04053_consen 38 LSHNPNGRFVLVCG----DGEYEIYTALA--WRN--K---AFGSGLSFVWSSRN--------RYAVLESSSTIKIYKN-- 96 (443)
T ss_dssp EEE-TTSSEEEEEE----TTEEEEEETTT--TEE--E---EEEE-SEEEE-TSS--------EEEEE-TTS-EEEEET--
T ss_pred EEECCCCCEEEEEc----CCEEEEEEccC--Ccc--c---ccCceeEEEEecCc--------cEEEEECCCeEEEEEc--
Confidence 35899999999975 88888888432 111 1 12344567787763 5777777888999631
Q ss_pred cccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 000054 2405 IATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2405 l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
.+. +....+ + ....+..+-. |.+|...+.+ .|.+||..
T Consensus 97 ~~~-~~~k~i------------------------------------~-~~~~~~~If~---G~LL~~~~~~-~i~~yDw~ 134 (443)
T PF04053_consen 97 FKN-EVVKSI------------------------------------K-LPFSVEKIFG---GNLLGVKSSD-FICFYDWE 134 (443)
T ss_dssp TEE--TT------------------------------------------SS-EEEEE----SSSEEEEETT-EEEEE-TT
T ss_pred Ccc-ccceEE------------------------------------c-CCcccceEEc---CcEEEEECCC-CEEEEEhh
Confidence 111 110111 0 0112333322 7777777655 89999999
Q ss_pred CCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECC
Q 000054 2485 AAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2485 Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~ 2542 (2548)
+++.+.++. + ..|..+.|+++| +++-..+.++.|.+.+
T Consensus 135 ~~~~i~~i~-------------------v-~~vk~V~Ws~~g~~val~t~~~i~il~~~ 173 (443)
T PF04053_consen 135 TGKLIRRID-------------------V-SAVKYVIWSDDGELVALVTKDSIYILKYN 173 (443)
T ss_dssp T--EEEEES-------------------S--E-EEEEE-TTSSEEEEE-S-SEEEEEE-
T ss_pred HcceeeEEe-------------------c-CCCcEEEEECCCCEEEEEeCCeEEEEEec
Confidence 999999882 1 125677899999 5544456677777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.97 E-value=26 Score=48.05 Aligned_cols=71 Identities=10% Similarity=0.080 Sum_probs=35.8
Q ss_pred CCCEEEEEeCC------CcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccC--CCCeEEEEECCC
Q 000054 2282 YGHRFASAALD------GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSS--NGINVVVWDTLA 2353 (2548)
Q Consensus 2282 dG~~LaSGS~D------GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS--~DGtVrIWDl~t 2353 (2548)
++..++.||.+ ..+..||..+..-....+. ...........-+|++.+.||... .-..+..||..+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m------~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPM------IKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCC------cchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCC
Confidence 56777777754 2466788776532221111 101111112233678888887310 013588899876
Q ss_pred CCCCc
Q 000054 2354 PPTSS 2358 (2548)
Q Consensus 2354 ~~~k~ 2358 (2548)
.....
T Consensus 377 ~~W~~ 381 (557)
T PHA02713 377 DKWKM 381 (557)
T ss_pred CeEEE
Confidence 43333
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.85 E-value=1e+02 Score=40.43 Aligned_cols=203 Identities=15% Similarity=0.148 Sum_probs=122.2
Q ss_pred EEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC---CCcEEEE
Q 000054 2223 RAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL---DGTVCTW 2298 (2548)
Q Consensus 2223 ~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~---DGtVrVW 2298 (2548)
..++.++.+. .+++...++.|.+.|..+.+....... + ..-..++++++++.+..+.. ++++.+.
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v--G---------~~P~~~~~~~~~~~vYV~n~~~~~~~vsvi 145 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV--G---------LGPVGLAVDPDGKYVYVANAGNGNNTVSVI 145 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee--c---------cCCceEEECCCCCEEEEEecccCCceEEEE
Confidence 4455667776 455556678999999777766665432 0 25678999999988877765 6888888
Q ss_pred EcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcce-e---eeccCCCeEEEEE
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA-S---ITCHEGGARSISV 2374 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~-s---l~gHs~~VtSLaf 2374 (2548)
|-.+++..... ..+....-..++|+|+.+..+. +.++.|.+.|.... .... . ...-...-..+.+
T Consensus 146 d~~t~~~~~~~-------~vG~~P~~~a~~p~g~~vyv~~--~~~~~v~vi~~~~~--~v~~~~~~~~~~~~~~P~~i~v 214 (381)
T COG3391 146 DAATNKVTATI-------PVGNTPTGVAVDPDGNKVYVTN--SDDNTVSVIDTSGN--SVVRGSVGSLVGVGTGPAGIAV 214 (381)
T ss_pred eCCCCeEEEEE-------ecCCCcceEEECCCCCeEEEEe--cCCCeEEEEeCCCc--ceeccccccccccCCCCceEEE
Confidence 88777543321 2222222235899999777764 36899999997642 1111 0 0111223456677
Q ss_pred ccCCCCCCCCCC-EEEEEeCC--CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc
Q 000054 2375 FDNDLGSGSVSP-LIVTGGKG--GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK 2451 (2548)
Q Consensus 2375 sP~dlg~gs~g~-lLVSGS~D--GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~ 2451 (2548)
.|+ +. ..++-..+ +.+...|. .++...... ...
T Consensus 215 ~~~-------g~~~yV~~~~~~~~~v~~id~---~~~~v~~~~----------------------------------~~~ 250 (381)
T COG3391 215 DPD-------GNRVYVANDGSGSNNVLKIDT---ATGNVTATD----------------------------------LPV 250 (381)
T ss_pred CCC-------CCEEEEEeccCCCceEEEEeC---CCceEEEec----------------------------------ccc
Confidence 777 44 33333333 57777773 333333221 001
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECCCCcEEEEe
Q 000054 2452 AHLGSVTRISTVPNTSLFLTGSK-DGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS~-DGtIrIWDl~Tgell~tL 2492 (2548)
+.. .-..+..+|+|..+.+... .+.+.+-|..+.+....+
T Consensus 251 ~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~ 291 (381)
T COG3391 251 GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTG 291 (381)
T ss_pred ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeee
Confidence 111 3345677888887777733 478888888777776655
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=86.27 E-value=39 Score=46.62 Aligned_cols=138 Identities=17% Similarity=0.254 Sum_probs=73.3
Q ss_pred CCEEEEEECC------CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC-C-----cEEEE
Q 000054 2231 RPFFLVGSSN------THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD-G-----TVCTW 2298 (2548)
Q Consensus 2231 G~~LASGS~D------GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D-G-----tVrVW 2298 (2548)
+.+++.||.+ ..+..+|..+++-... ..++ +...-.+++.. ++..+++||.| | ++-.|
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~-a~m~--------~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~Y 354 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSL-APMP--------SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERY 354 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeec-CCCC--------cccccccEEEE-CCEEEEEccccCCCcccceEEEe
Confidence 4556667666 3577888877643322 1111 11222333333 46778899988 3 66778
Q ss_pred EcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCC-----eEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGI-----NVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DG-----tVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
|..+++-....+. . ...+...+. .-+|.+.|+|| .|| +|-.||..+.....+..+.......-.+.
T Consensus 355 D~~~~~W~~~a~M---~-~~R~~~~v~--~l~g~iYavGG---~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~ 425 (571)
T KOG4441|consen 355 DPRTNQWTPVAPM---N-TKRSDFGVA--VLDGKLYAVGG---FDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV 425 (571)
T ss_pred cCCCCceeccCCc---c-CccccceeE--EECCEEEEEec---cccccccccEEEecCCCCcccccCCCCcceeeeEEEE
Confidence 8776642221111 1 111122222 23788888888 454 47788988755555554433222222222
Q ss_pred EccCCCCCCCCCCEEEEEeCCCc
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKGGD 2396 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGt 2396 (2548)
+ + +.+.+.||.|+.
T Consensus 426 ~---~------g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 426 L---G------GKLYIIGGGDGS 439 (571)
T ss_pred E---C------CEEEEEcCcCCC
Confidence 2 1 568888886654
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=85.52 E-value=1.7e+02 Score=41.46 Aligned_cols=114 Identities=11% Similarity=0.082 Sum_probs=66.7
Q ss_pred EEEEEEcCCCCEEEEE-----ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC----
Q 000054 2222 TRAFSSHPLRPFFLVG-----SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD---- 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASG-----S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D---- 2292 (2548)
+..+.++|+|++|+.+ +....+++-|+.+|..+... +. +.-..++|.+|++.|+....+
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~--i~----------~~~~~~~w~~D~~~~~y~~~~~~~~ 196 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL--LD----------NVEPSFVWANDSWTFYYVRKHPVTL 196 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc--cc----------CcceEEEEeeCCCEEEEEEecCCCC
Confidence 5678889999988853 33345888898877532221 00 111569999998877666443
Q ss_pred --CcEEEEEcCCCcccccccCccceeccCCc--ccEEE-EcCCCCEEEEEeccCCCCeEEEEECCC
Q 000054 2293 --GTVCTWQLEVGGRSNVRPMESCLCFSSHA--MDVSY-ITSSGSVIAAAGHSSNGINVVVWDTLA 2353 (2548)
Q Consensus 2293 --GtVrVWDl~tgk~i~i~p~~s~~t~~gH~--~~V~a-fSpdGslLATgG~SS~DGtVrIWDl~t 2353 (2548)
..|..+++.++..... ..+.... ..+.. .+.+++.++....+..++.+.+++...
T Consensus 197 ~~~~v~~h~lgt~~~~d~------lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 197 LPYQVWRHTIGTPASQDE------LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred CCCEEEEEECCCChhHCe------EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 2566777776631111 1122211 12222 344777666554444567899999654
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=85.14 E-value=32 Score=45.66 Aligned_cols=154 Identities=16% Similarity=0.110 Sum_probs=87.0
Q ss_pred eEEEEEEEcCCCCEEEEE---ECC-CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEE-EeCCCc
Q 000054 2220 ISTRAFSSHPLRPFFLVG---SSN-THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFAS-AALDGT 2294 (2548)
Q Consensus 2220 V~V~~VsfSPdG~~LASG---S~D-GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaS-GS~DGt 2294 (2548)
..+..-.|+|++..++.- ... ..+.++++++++...... .. +.-..-+|+|||++++. ...||.
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~----------g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FN----------GNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cC----------CccCCccCCCCCCEEEEEECCCCC
Confidence 335666788888876632 222 469999999876554442 12 33455689999988765 466776
Q ss_pred EEEE--EcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEE
Q 000054 2295 VCTW--QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSI 2372 (2548)
Q Consensus 2295 VrVW--Dl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSL 2372 (2548)
..+| |+.++.... .....+... --+|+|||+.++.+. +..|.-.||-.... +.....+....+.-..-
T Consensus 262 ~~iy~~dl~~~~~~~------Lt~~~gi~~-~Ps~spdG~~ivf~S--dr~G~p~I~~~~~~-g~~~~riT~~~~~~~~p 331 (425)
T COG0823 262 PDIYLMDLDGKNLPR------LTNGFGINT-SPSWSPDGSKIVFTS--DRGGRPQIYLYDLE-GSQVTRLTFSGGGNSNP 331 (425)
T ss_pred ccEEEEcCCCCccee------cccCCcccc-CccCCCCCCEEEEEe--CCCCCcceEEECCC-CCceeEeeccCCCCcCc
Confidence 5555 554433111 000111111 125899999998875 35666555554432 23334444333333366
Q ss_pred EEccCCCCCCCCCCEEEEEeC-CCc--EEEEe
Q 000054 2373 SVFDNDLGSGSVSPLIVTGGK-GGD--VGIHD 2401 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS~-DGt--VrLWD 2401 (2548)
.|+|+ |++++..+. +|. |.+.|
T Consensus 332 ~~Spd-------G~~i~~~~~~~g~~~i~~~~ 356 (425)
T COG0823 332 VWSPD-------GDKIVFESSSGGQWDIDKND 356 (425)
T ss_pred cCCCC-------CCEEEEEeccCCceeeEEec
Confidence 67777 677666554 344 44554
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=84.84 E-value=47 Score=43.95 Aligned_cols=48 Identities=17% Similarity=0.244 Sum_probs=36.6
Q ss_pred eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCC
Q 000054 2345 NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFR 2403 (2548)
Q Consensus 2345 tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR 2403 (2548)
.|+||+.. ++.+..+.-..+.+.++.|..++ .|+.-..||.++++|+.
T Consensus 62 ~I~iys~s---G~ll~~i~w~~~~iv~~~wt~~e--------~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSSS---GKLLSSIPWDSGRIVGMGWTDDE--------ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCC---CCEeEEEEECCCCEEEEEECCCC--------eEEEEEcCCEEEEEeCC
Confidence 58888875 45666555444899999998774 67777899999999964
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=84.49 E-value=1.3e+02 Score=38.57 Aligned_cols=111 Identities=11% Similarity=0.097 Sum_probs=57.4
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC---CCEEEEEeC-C------
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY---GHRFASAAL-D------ 2292 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd---G~~LaSGS~-D------ 2292 (2548)
+.|+|.|+|+++++ ...|.|++++ ..+.....+..... -..........++++|+ ..+|..... .
T Consensus 5 ~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~---v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 5 RSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPE---VFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp EEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TT---TBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred eEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceeccccc---ccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 78899999987665 6699999999 44443222222210 01123467899999994 334433322 1
Q ss_pred --CcEEEEEcCCCc-ccc-cccC---ccceeccCCcccEEEEcCCCCEEEEEe
Q 000054 2293 --GTVCTWQLEVGG-RSN-VRPM---ESCLCFSSHAMDVSYITSSGSVIAAAG 2338 (2548)
Q Consensus 2293 --GtVrVWDl~tgk-~i~-i~p~---~s~~t~~gH~~~V~afSpdGslLATgG 2338 (2548)
..|.-|....+. ... .... ........|...-..|.|||.+.++.|
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G 132 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG 132 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence 134444444331 000 0000 000012346655567999998888877
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=84.29 E-value=30 Score=45.91 Aligned_cols=112 Identities=20% Similarity=0.186 Sum_probs=64.6
Q ss_pred CCeEEEEEccCCCEEEEEe---CC-CcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEE
Q 000054 2272 ASISALQFDHYGHRFASAA---LD-GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVV 2347 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS---~D-GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVr 2347 (2548)
..+..-+|+|++..++..+ .. ..+.++++++++...+. .+.++.. .-.|+|||+.++.+. ..||...
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~------~~~g~~~-~P~fspDG~~l~f~~--~rdg~~~ 263 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL------NFNGNNG-APAFSPDGSKLAFSS--SRDGSPD 263 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee------ccCCccC-CccCCCCCCEEEEEE--CCCCCcc
Confidence 4566678889887765442 22 35889999988643322 1333332 225899999988876 3667655
Q ss_pred EE--ECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEE-EEeCCCcEEEEeC
Q 000054 2348 VW--DTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIV-TGGKGGDVGIHDF 2402 (2548)
Q Consensus 2348 IW--Dl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLV-SGS~DGtVrLWDL 2402 (2548)
|| |+.. .. ...+..-.+.-..=.|+|+ |+.++ +.+..|.-.||-+
T Consensus 264 iy~~dl~~--~~-~~~Lt~~~gi~~~Ps~spd-------G~~ivf~Sdr~G~p~I~~~ 311 (425)
T COG0823 264 IYLMDLDG--KN-LPRLTNGFGINTSPSWSPD-------GSKIVFTSDRGGRPQIYLY 311 (425)
T ss_pred EEEEcCCC--Cc-ceecccCCccccCccCCCC-------CCEEEEEeCCCCCcceEEE
Confidence 55 5543 22 3233322233335567777 55544 5556666555553
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=81.44 E-value=3.3 Score=38.28 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=31.2
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000054 2453 HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLV 2489 (2548)
Q Consensus 2453 H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell 2489 (2548)
....|.+++|+|..+++|.|+.||.|.++.+ +++.+
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence 3457999999999999999999999999998 55543
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=81.33 E-value=30 Score=46.94 Aligned_cols=111 Identities=12% Similarity=0.139 Sum_probs=53.5
Q ss_pred CCCEEEEEECCC------eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC-----cEEEE
Q 000054 2230 LRPFFLVGSSNT------HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG-----TVCTW 2298 (2548)
Q Consensus 2230 dG~~LASGS~DG------sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG-----tVrVW 2298 (2548)
++..++.||.++ .+..||..+++.. .....+. + ......+.. ++..++.||.++ .+..|
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~-~~~~~~~---~----R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~y 363 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWN-KVPELIY---P----RKNPGVTVF--NNRIYVIGGIYNSISLNTVESW 363 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeee-ECCCCCc---c----cccceEEEE--CCEEEEEeCCCCCEecceEEEE
Confidence 455666666543 4677887766542 2211110 1 111222222 577778887663 56678
Q ss_pred EcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCC---CeEEEEECCCCCC
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG---INVVVWDTLAPPT 2356 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~D---GtVrIWDl~t~~~ 2356 (2548)
|..+++-....+.. ....+|.. ...++++++.||....+ +.+..||+.+...
T Consensus 364 d~~~~~W~~~~~lp--~~r~~~~~----~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 364 KPGESKWREEPPLI--FPRYNPCV----VNVNNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred cCCCCceeeCCCcC--cCCccceE----EEECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 87665322111110 01112221 22366777777632111 4578889875433
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.26 E-value=14 Score=48.94 Aligned_cols=148 Identities=11% Similarity=0.011 Sum_probs=96.0
Q ss_pred CCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccC
Q 000054 2329 SSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATG 2408 (2548)
Q Consensus 2329 pdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TG 2408 (2548)
.+.++++..+. ....++--|+.. ++.+.....|.+ |+-+.+.|+.-+.-.....-+.|-.|..|.-||.| ....
T Consensus 343 ~dsnlil~~~~--~~~~l~klDIE~--GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpR-v~~~ 416 (644)
T KOG2395|consen 343 ADSNLILMDGG--EQDKLYKLDIER--GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPR-VQGK 416 (644)
T ss_pred cccceEeeCCC--CcCcceeeeccc--ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEeccc-ccCc
Confidence 45556655442 445677777776 778888877766 77777777731110012234567789999999988 3332
Q ss_pred ceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Q 000054 2409 KTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVK 2479 (2548)
Q Consensus 2409 k~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIr 2479 (2548)
..+...............+.+...+|.+ +++.+|.+++|+- +.+-..+|.-|..+.+|++++..+ +..+.
T Consensus 417 ~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLl 495 (644)
T KOG2395|consen 417 NKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLL 495 (644)
T ss_pred ceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEE
Confidence 2222222223333444556666777777 8889999999983 457788999999999999988765 45565
Q ss_pred EEEC
Q 000054 2480 LWDA 2483 (2548)
Q Consensus 2480 IWDl 2483 (2548)
+-|+
T Consensus 496 Li~t 499 (644)
T KOG2395|consen 496 LIDT 499 (644)
T ss_pred EEEE
Confidence 6554
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.22 E-value=3.8 Score=49.21 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=76.6
Q ss_pred EEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc
Q 000054 2286 FASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH 2365 (2548)
Q Consensus 2286 LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH 2365 (2548)
+..-+.||.|+-++++.-+.. .+. -.-+... ..+..-+..+++|+ .+|.|.+|..... +.....+..-
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s-~rs------e~~~~e~-~~v~~~~~~~~vG~---~dg~v~~~n~n~~-g~~~d~~~s~ 100 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKES-CRS------ERFIDEG-QRVVTASAKLMVGT---SDGAVYVFNWNLE-GAHSDRVCSG 100 (238)
T ss_pred hccccCCcccccchhhhhhhh-hhh------hhhhhcc-eeecccCceEEeec---ccceEEEecCCcc-chHHHhhhcc
Confidence 445577888888887643211 000 0111111 11222345666665 7999999988631 1111111111
Q ss_pred CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCce
Q 000054 2366 EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGM 2445 (2548)
Q Consensus 2366 s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~ 2445 (2548)
...|.+..-.-.+ +.+..+++.||.|+.|++ +.++.+...
T Consensus 101 ~e~i~~~Ip~~~~------~~~~c~~~~dg~ir~~n~---~p~k~~g~~------------------------------- 140 (238)
T KOG2444|consen 101 EESIDLGIPNGRD------SSLGCVGAQDGRIRACNI---KPNKVLGYV------------------------------- 140 (238)
T ss_pred cccceeccccccc------cceeEEeccCCceeeecc---ccCceeeee-------------------------------
Confidence 2222222222221 558889999999999994 334433322
Q ss_pred EEEcccCCC-CCEEEEEEeCCCCEEEEE--eCCCcEEEEECCC
Q 000054 2446 LWYIPKAHL-GSVTRISTVPNTSLFLTG--SKDGDVKLWDAKA 2485 (2548)
Q Consensus 2446 Iwdi~~gH~-~~VtsLafSPdG~~LaSG--S~DGtIrIWDl~T 2485 (2548)
..|. .++........+++++.+ |.|..++.|++..
T Consensus 141 -----g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 141 -----GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred -----ccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 2344 455555556666777777 7777777887763
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2548 | |||
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.98 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.97 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.97 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.97 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.97 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.97 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.97 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.97 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.97 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.96 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.96 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.96 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.96 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.96 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.96 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.96 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.95 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.95 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.95 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.95 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.95 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.95 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.95 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.95 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.95 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.95 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.94 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.94 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.94 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.94 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.94 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.94 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.94 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.94 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.94 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.94 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.94 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.94 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.94 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.94 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.94 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.93 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.93 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.93 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.93 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.93 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.93 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.93 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.93 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.93 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.93 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.93 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.92 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.92 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.92 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.92 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.92 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.92 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.92 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.92 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.92 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.92 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.92 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.92 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.91 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.91 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.91 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.91 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.91 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.91 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.91 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.91 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.91 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.91 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.91 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.91 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.91 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.9 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.9 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.9 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.9 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.9 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.9 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.9 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.89 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.89 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.89 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.89 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.89 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.88 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.88 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.88 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.88 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.88 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.87 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.87 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.87 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.87 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.87 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.87 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.87 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.87 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.87 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.86 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.86 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.86 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.85 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.85 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.85 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.85 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.85 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.85 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.84 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.84 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.83 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.83 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.83 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.83 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.82 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.8 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.79 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.79 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.78 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.78 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.74 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.68 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.67 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.65 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.65 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.64 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.64 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.62 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.61 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.61 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.61 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.61 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.6 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.58 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.58 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.56 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.54 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.54 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.53 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.52 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.48 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.48 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.46 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.45 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.45 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.44 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.43 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.42 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.41 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.4 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.39 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.36 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.33 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.33 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.32 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.31 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.3 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.28 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.26 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.26 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.21 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.1 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.09 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.08 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.08 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.06 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.03 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.01 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.01 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.01 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.0 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.99 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.94 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.92 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.89 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.89 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.87 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.87 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.86 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.84 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.82 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.82 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.8 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.8 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.79 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.79 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.78 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.69 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.64 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.6 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.59 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.58 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.58 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.56 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.55 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.54 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.48 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.47 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.42 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.42 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.41 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.38 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.35 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.34 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.32 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.3 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.27 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.24 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.23 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.19 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.16 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.15 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.06 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.0 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 97.97 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.94 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 97.88 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.87 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 97.81 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.78 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.74 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.68 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 97.66 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.61 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.54 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.49 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.43 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.39 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.36 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.33 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.28 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.14 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.14 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.13 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.11 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.1 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.04 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 96.99 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.98 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 96.87 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 96.78 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 96.77 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 96.73 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 96.73 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 96.72 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 96.68 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.61 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.5 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.39 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.36 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.22 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 96.06 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 96.02 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 95.99 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 95.97 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 95.9 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 95.85 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 95.78 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 95.76 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 95.7 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 95.57 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 95.5 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 95.21 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 95.05 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 95.01 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 94.98 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 94.96 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 94.96 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 94.94 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 94.31 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 94.29 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 94.0 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 93.67 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 93.46 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 93.08 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 92.99 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 92.89 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 92.24 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 92.1 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 92.09 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 92.04 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 91.65 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 91.05 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 91.04 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 89.4 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 89.38 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 89.21 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 89.1 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 88.63 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 88.31 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 88.06 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 87.64 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 87.5 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 86.74 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 86.22 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 86.22 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 85.95 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 85.44 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 85.05 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 84.8 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 84.54 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 84.11 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 83.98 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 83.89 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 83.85 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 83.71 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 83.5 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 82.73 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 81.1 |
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-30 Score=327.71 Aligned_cols=271 Identities=18% Similarity=0.252 Sum_probs=227.3
Q ss_pred cCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCc
Q 000054 2217 VENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT 2294 (2548)
Q Consensus 2217 l~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGt 2294 (2548)
+.+|. |.+++|+|+++++++|+.||+|+|||+.+++....+.. |.+.|++++|+|++++|++|+.||+
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~----------h~~~V~~v~~~~~~~~l~sgs~D~~ 173 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG----------HTDSVQDISFDHSGKLLASCSADMT 173 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC----------CSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEec----------cCCcEEEEEEcCCCCEEEEEeCCCe
Confidence 34443 79999999999999999999999999999988877643 5689999999999999999999999
Q ss_pred EEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEE
Q 000054 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSI 2372 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSL 2372 (2548)
|++||+.+++.. ..+.+|...|.+ |+|+++++++++ .|++|++||+++ +.++..+.+|...|.++
T Consensus 174 i~iwd~~~~~~~--------~~~~~h~~~V~~v~~~p~~~~l~s~s---~D~~i~~wd~~~--~~~~~~~~~h~~~v~~~ 240 (410)
T 1vyh_C 174 IKLWDFQGFECI--------RTMHGHDHNVSSVSIMPNGDHIVSAS---RDKTIKMWEVQT--GYCVKTFTGHREWVRMV 240 (410)
T ss_dssp CCEEETTSSCEE--------ECCCCCSSCEEEEEECSSSSEEEEEE---TTSEEEEEETTT--CCEEEEEECCSSCEEEE
T ss_pred EEEEeCCCCcee--------EEEcCCCCCEEEEEEeCCCCEEEEEe---CCCeEEEEECCC--CcEEEEEeCCCccEEEE
Confidence 999999876533 346788888875 899999999986 899999999986 67888999999999999
Q ss_pred EEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCC-------------------
Q 000054 2373 SVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQT------------------- 2433 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpd------------------- 2433 (2548)
.++|+ +.++++|+.||+|++||+ .++++...+... ......+.|+|+
T Consensus 241 ~~~~~-------g~~l~s~s~D~~v~vwd~---~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (410)
T 1vyh_C 241 RPNQD-------GTLIASCSNDQTVRVWVV---ATKECKAELREH----RHVVECISWAPESSYSSISEATGSETKKSGK 306 (410)
T ss_dssp EECTT-------SSEEEEEETTSCEEEEET---TTCCEEEEECCC----SSCEEEEEECCSCGGGGGGGCCSCC------
T ss_pred EECCC-------CCEEEEEcCCCeEEEEEC---CCCceeeEecCC----CceEEEEEEcCcccccchhhhccccccccCC
Confidence 99998 789999999999999994 456666555211 122344556654
Q ss_pred -CCC--ccCCCCCceEEEcc--------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccc
Q 000054 2434 -GSG--SKPGDQNGMLWYIP--------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFL 2502 (2548)
Q Consensus 2434 -Gk~--v~s~D~sv~Iwdi~--------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl 2502 (2548)
|.+ .++.|+.+++||+. .+|.+.|++++|+|+|++|++|+.||+|++||+.+++++.++
T Consensus 307 ~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~---------- 376 (410)
T 1vyh_C 307 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL---------- 376 (410)
T ss_dssp -CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE----------
T ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEE----------
Confidence 333 56778899999953 479999999999999999999999999999999999888766
Q ss_pred cCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECC
Q 000054 2503 QPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2503 ~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
.+|.+. |++++|+|++ |+|||.||+|++|+++
T Consensus 377 ----~~h~~~----v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 377 ----NAHEHF----VTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ----ECCSSC----EEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred ----cCCCCc----EEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 567643 5778999999 9999999999999863
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=308.88 Aligned_cols=273 Identities=16% Similarity=0.232 Sum_probs=226.2
Q ss_pred ccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000054 2216 TVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
++.+|. |.+++|+|++++|++|+.||+|++||..+++.+..+.. |...|.+++|+|+++++++|+.||
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~----------~~~~v~~~~~s~~~~~l~s~~~d~ 119 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL----------RSSWVMTCAYAPSGNYVACGGLDN 119 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC----------SSSCEEEEEECTTSSEEEEEETTC
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec----------CCccEEEEEECCCCCEEEEEeCCC
Confidence 444554 79999999999999999999999999999988877643 458899999999999999999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
.|++|++.++... ......+.+|...|.+ +++++. +++++ .|++|++||+.+ ++.+..+.+|.+.|.+
T Consensus 120 ~v~iw~~~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s---~d~~i~~wd~~~--~~~~~~~~~h~~~v~~ 189 (340)
T 1got_B 120 ICSIYNLKTREGN----VRVSRELAGHTGYLSCCRFLDDNQ-IVTSS---GDTTCALWDIET--GQQTTTFTGHTGDVMS 189 (340)
T ss_dssp EEEEEETTTCSBS----CEEEEEEECCSSCEEEEEEEETTE-EEEEE---TTSCEEEEETTT--TEEEEEECCCSSCEEE
T ss_pred eEEEEECccCCCc----ceeEEEecCCCccEEEEEECCCCc-EEEEE---CCCcEEEEECCC--CcEEEEEcCCCCceEE
Confidence 9999999865321 1123446788888874 666665 66765 899999999986 6778889999999999
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI 2449 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi 2449 (2548)
++|+|+ +.++++|+.||+|++||+ .+++++..+.. .......+.|+|+|.+ +++.|+.+++|++
T Consensus 190 ~~~~~~-------~~~l~sg~~d~~v~~wd~---~~~~~~~~~~~----h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~ 255 (340)
T 1got_B 190 LSLAPD-------TRLFVSGACDASAKLWDV---REGMCRQTFTG----HESDINAICFFPNGNAFATGSDDATCRLFDL 255 (340)
T ss_dssp EEECTT-------SSEEEEEETTSCEEEEET---TTCSEEEEECC----CSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEECCC-------CCEEEEEeCCCcEEEEEC---CCCeeEEEEcC----CcCCEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence 999998 789999999999999995 45677666521 1223567889999987 6778899999996
Q ss_pred cc----------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEE
Q 000054 2450 PK----------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTD 2519 (2548)
Q Consensus 2450 ~~----------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vts 2519 (2548)
.. .+...|++++|+|+|++|++|+.||.|++||+.+++.+.++ .+|.+. |.+
T Consensus 256 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~--------------~~h~~~----v~~ 317 (340)
T 1got_B 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL--------------AGHDNR----VSC 317 (340)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--------------ECCSSC----EEE
T ss_pred CCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe--------------ecCCCc----EEE
Confidence 42 23357999999999999999999999999999999988766 677754 567
Q ss_pred EEEcCCe--EEEEECCCcEEEEE
Q 000054 2520 IQVVSRG--FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2520 LafSPdG--LaSGS~DGtIrIWD 2540 (2548)
++|+|+| |+|||.||+|++||
T Consensus 318 ~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 318 LGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEcCCCCEEEEEcCCccEEecC
Confidence 7999999 99999999999997
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=307.79 Aligned_cols=268 Identities=17% Similarity=0.245 Sum_probs=222.1
Q ss_pred EEEEEEcCC----CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 000054 2222 TRAFSSHPL----RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPd----G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrV 2297 (2548)
|.+++|+|+ +.+|++|+.|++|+|||+.+++...... + .+|...|.+++|++++..+++|+.||+|++
T Consensus 35 V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~-l-------~gh~~~v~~~~~~~~~~~l~s~s~D~~i~l 106 (321)
T 3ow8_A 35 IWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWS-L-------EGHQLGVVSVDISHTLPIAASSSLDAHIRL 106 (321)
T ss_dssp EEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEE-E-------CCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred EEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeee-e-------ccCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 699999874 6799999999999999998776433321 2 236689999999999999999999999999
Q ss_pred EEcCCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEc
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafs 2375 (2548)
||+++++... .+..|...+ .+|+|+++++++++ .|+.|++||++. .+....+..|...|.+++|+
T Consensus 107 Wd~~~~~~~~--------~~~~~~~~~~~~~~spdg~~l~~g~---~dg~v~i~~~~~--~~~~~~~~~~~~~v~~~~~s 173 (321)
T 3ow8_A 107 WDLENGKQIK--------SIDAGPVDAWTLAFSPDSQYLATGT---HVGKVNIFGVES--GKKEYSLDTRGKFILSIAYS 173 (321)
T ss_dssp EETTTTEEEE--------EEECCTTCCCCEEECTTSSEEEEEC---TTSEEEEEETTT--CSEEEEEECSSSCEEEEEEC
T ss_pred EECCCCCEEE--------EEeCCCccEEEEEECCCCCEEEEEc---CCCcEEEEEcCC--CceeEEecCCCceEEEEEEC
Confidence 9999876432 244455444 35999999999986 899999999986 56777888899999999999
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc----
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI---- 2449 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi---- 2449 (2548)
|+ +++|++|+.||.|++|| +.+++.+..+.. .......+.|+|++++ .++.|+.+++|++
T Consensus 174 pd-------g~~lasg~~dg~i~iwd---~~~~~~~~~~~~----h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~ 239 (321)
T 3ow8_A 174 PD-------GKYLASGAIDGIINIFD---IATGKLLHTLEG----HAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHAN 239 (321)
T ss_dssp TT-------SSEEEEEETTSCEEEEE---TTTTEEEEEECC----CSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCC
T ss_pred CC-------CCEEEEEcCCCeEEEEE---CCCCcEEEEEcc----cCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcc
Confidence 98 78999999999999999 556777766621 1223456889999987 6678889999985
Q ss_pred ----ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCC
Q 000054 2450 ----PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSR 2525 (2548)
Q Consensus 2450 ----~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPd 2525 (2548)
+.+|...|.+++|+|++++|++|+.||+|++||+++++++.++ .+|.+. |++++|+|+
T Consensus 240 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~--------------~~h~~~----v~~v~~s~~ 301 (321)
T 3ow8_A 240 LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF--------------FDHQDQ----VWGVKYNGN 301 (321)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE--------------CCCSSC----EEEEEECTT
T ss_pred eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE--------------cCCCCc----EEEEEECCC
Confidence 3579999999999999999999999999999999999999877 567643 567799999
Q ss_pred e--EEEEECCCcEEEEECC
Q 000054 2526 G--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2526 G--LaSGS~DGtIrIWDL~ 2542 (2548)
| |++++.||+|++||.+
T Consensus 302 g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 302 GSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SSEEEEEETTCCEEEEECC
T ss_pred CCEEEEEeCCCeEEEEeCC
Confidence 9 9999999999999974
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=303.67 Aligned_cols=279 Identities=14% Similarity=0.212 Sum_probs=221.4
Q ss_pred CCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC
Q 000054 2214 PATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL 2291 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~ 2291 (2548)
..++.+|. |.+++|+|++++|++|+.||+|++||+.+++.+..+.. |...|.+++|+|++++|++|+.
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~s~s~ 75 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQV----------TETPVRAGKFIARKNWIIVGSD 75 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC----------CSSCEEEEEEEGGGTEEEEEET
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeec----------cCCcEEEEEEeCCCCEEEEECC
Confidence 33455554 89999999999999999999999999999988877753 4588999999999999999999
Q ss_pred CCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe
Q 000054 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA 2369 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V 2369 (2548)
||+|++||+++++.. ..+.+|...|.+ ++|+++++++|+ .|++|++||++.. ......+.+|...|
T Consensus 76 d~~i~vwd~~~~~~~--------~~~~~h~~~v~~~~~~~~~~~l~sgs---~D~~v~lWd~~~~-~~~~~~~~~h~~~v 143 (304)
T 2ynn_A 76 DFRIRVFNYNTGEKV--------VDFEAHPDYIRSIAVHPTKPYVLSGS---DDLTVKLWNWENN-WALEQTFEGHEHFV 143 (304)
T ss_dssp TSEEEEEETTTCCEE--------EEEECCSSCEEEEEECSSSSEEEEEE---TTSCEEEEEGGGT-TEEEEEECCCCSCE
T ss_pred CCEEEEEECCCCcEE--------EEEeCCCCcEEEEEEcCCCCEEEEEC---CCCeEEEEECCCC-cchhhhhcccCCcE
Confidence 999999999987643 347789888874 899999999986 8999999999752 34567788999999
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCC--CCCC--ccCCCCCce
Q 000054 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQ--TGSG--SKPGDQNGM 2445 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSp--dGk~--v~s~D~sv~ 2445 (2548)
.+++|+|.+ +..|++|+.||+|++||++. +.....+... .......+.+.+ ++.+ .++.|+.++
T Consensus 144 ~~v~~~p~~------~~~l~sgs~D~~v~iwd~~~---~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~s~s~D~~i~ 211 (304)
T 2ynn_A 144 MCVAFNPKD------PSTFASGCLDRTVKVWSLGQ---STPNFTLTTG---QERGVNYVDYYPLPDKPYMITASDDLTIK 211 (304)
T ss_dssp EEEEECTTC------TTEEEEEETTSEEEEEETTC---SSCSEEEECC---CTTCEEEEEECCSTTCCEEEEEETTSEEE
T ss_pred EEEEECCCC------CCEEEEEeCCCeEEEEECCC---CCccceeccC---CcCcEEEEEEEEcCCCCEEEEEcCCCeEE
Confidence 999999964 77999999999999999653 3333222111 111123344444 5555 678899999
Q ss_pred EEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecE
Q 000054 2446 LWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGV 2517 (2548)
Q Consensus 2446 Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~V 2517 (2548)
+|++ +.+|...|.+++|+|++++|++|+.||+|++||+++++++.++ .+|.+. +
T Consensus 212 iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~--------------~~~~~~----~ 273 (304)
T 2ynn_A 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL--------------NVGLER----S 273 (304)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE--------------CCSSSS----E
T ss_pred EEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec--------------cCCCcc----E
Confidence 9995 3579999999999999999999999999999999999999877 445433 4
Q ss_pred EEEEEcCCe---EEEEECCCcEEEEECCCC
Q 000054 2518 TDIQVVSRG---FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2518 tsLafSPdG---LaSGS~DGtIrIWDL~sg 2544 (2548)
++++++|++ +++++.|..+.+|++.+.
T Consensus 274 ~~~~~~~~~~~~~~asg~~~g~~~~~~~~~ 303 (304)
T 2ynn_A 274 WCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (304)
T ss_dssp EEEEECTTCGGGCEEEEETTEEEEEECC--
T ss_pred EEEEECCCCCceEEEEecCCceEEEEeccC
Confidence 677999987 344445556778888654
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=312.91 Aligned_cols=277 Identities=16% Similarity=0.161 Sum_probs=210.4
Q ss_pred EEEEEEcCCCCEEEEEEC------CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcE
Q 000054 2222 TRAFSSHPLRPFFLVGSS------NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTV 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~------DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtV 2295 (2548)
|.+++|+|||++|++|+. |+.|++|+..++.....+.. ....|...|++++|+|++. +++++.||+|
T Consensus 45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~------~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v 117 (357)
T 4g56_B 45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT------AGVQTEAGVTDVAWVSEKG-ILVASDSGAV 117 (357)
T ss_dssp EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCS------EEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred EEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEec------ccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence 799999999999999997 77899999877654322211 1123568899999999976 6678899999
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
++||+.+++..... .....+|...|.+ |+|++++|++++ .|+.|++||+++ ++.+..+.+|.+.|++++
T Consensus 118 ~lWd~~~~~~~~~~----~~~~~~h~~~V~~v~~spdg~~l~sgs---~dg~v~iwd~~~--~~~~~~~~~h~~~v~~v~ 188 (357)
T 4g56_B 118 ELWEILEKESLLVN----KFAKYEHDDIVKTLSVFSDGTQAVSGG---KDFSVKVWDLSQ--KAVLKSYNAHSSEVNCVA 188 (357)
T ss_dssp EEC--------CCC----CEEECCCSSCEEEEEECSSSSEEEEEE---TTSCEEEEETTT--TEEEEEECCCSSCEEEEE
T ss_pred EEeeccccceeEEE----eeccCCCCCCEEEEEECCCCCEEEEEe---CCCeEEEEECCC--CcEEEEEcCCCCCEEEEE
Confidence 99999887643221 1235578888875 899999999997 899999999986 678889999999999999
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCC-C--ccCCCCCceEEEc-
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGS-G--SKPGDQNGMLWYI- 2449 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk-~--v~s~D~sv~Iwdi- 2449 (2548)
|++++ ..++++++.||+|++||++ +++....+. ..........++|+|++. + ++..++.+++|++
T Consensus 189 ~s~~~------~~~~~s~~~dg~v~~wd~~---~~~~~~~~~--~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~ 257 (357)
T 4g56_B 189 ACPGK------DTIFLSCGEDGRILLWDTR---KPKPATRID--FCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIK 257 (357)
T ss_dssp ECTTC------SSCEEEEETTSCEEECCTT---SSSCBCBCC--CTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESS
T ss_pred EccCC------CceeeeeccCCceEEEECC---CCceeeeee--eccccccccchhhhhcccceEEEeecccceeEEECC
Confidence 99984 4589999999999999954 455444331 111223345678898854 3 4577889999985
Q ss_pred -------ccCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEE
Q 000054 2450 -------PKAHLGSVTRISTVPNT-SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQ 2521 (2548)
Q Consensus 2450 -------~~gH~~~VtsLafSPdG-~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLa 2521 (2548)
+.+|...|++++|+|++ ++|++|+.||+|+|||+++++++..+ +|.+. |++++
T Consensus 258 ~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---------------~H~~~----V~~va 318 (357)
T 4g56_B 258 NPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---------------SHRDF----VTGVA 318 (357)
T ss_dssp CGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---------------CCSSC----EEEEE
T ss_pred CCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---------------CCCCC----EEEEE
Confidence 35799999999999987 68999999999999999999887633 57644 57789
Q ss_pred EcC-Ce--EEEEECCCcEEEEECCCC
Q 000054 2522 VVS-RG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2522 fSP-dG--LaSGS~DGtIrIWDL~sg 2544 (2548)
|+| ++ |+|||.||+|++|++++.
T Consensus 319 fsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 319 WSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp ECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 998 56 899999999999999754
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-28 Score=302.94 Aligned_cols=279 Identities=15% Similarity=0.204 Sum_probs=230.0
Q ss_pred CccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000054 2215 ATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2215 ~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
..+.+|. |.+++|+|++++|++|+.||+|++||..+++....+.. |...|.+++|+|+|..+++|+.|
T Consensus 58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~----------~~~~v~~~~~sp~g~~lasg~~d 127 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM----------PCTWVMACAYAPSGCAIACGGLD 127 (354)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC----------SSSCCCEEEECTTSSEEEEESTT
T ss_pred EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEec----------CCCCEEEEEECCCCCEEEEeeCC
Confidence 3455555 89999999999999999999999999999887777643 34789999999999999999999
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeE
Q 000054 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGAR 2370 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~Vt 2370 (2548)
+.+++|++........ ......+.+|...|.+ |++++..+++++ .|++|++||+++ ++.+..+.+|...|.
T Consensus 128 ~~i~v~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s---~D~~v~lwd~~~--~~~~~~~~~h~~~v~ 200 (354)
T 2pbi_B 128 NKCSVYPLTFDKNENM--AAKKKSVAMHTNYLSACSFTNSDMQILTAS---GDGTCALWDVES--GQLLQSFHGHGADVL 200 (354)
T ss_dssp SEEEEEECCCCTTCCS--GGGCEEEEECSSCEEEEEECSSSSEEEEEE---TTSEEEEEETTT--CCEEEEEECCSSCEE
T ss_pred CCEEEEEEeccccccc--cccceeeeccCCcEEEEEEeCCCCEEEEEe---CCCcEEEEeCCC--CeEEEEEcCCCCCeE
Confidence 9999999975432111 1223446678888764 899999999986 899999999986 678889999999999
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEE
Q 000054 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWY 2448 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwd 2448 (2548)
++.++|.. .+.+|++|+.||+|++||+ .+++++..+.. .......+.++|++.. +++.|+.+++|+
T Consensus 201 ~~~~~~~~-----~g~~l~sgs~Dg~v~~wd~---~~~~~~~~~~~----h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd 268 (354)
T 2pbi_B 201 CLDLAPSE-----TGNTFVSGGCDKKAMVWDM---RSGQCVQAFET----HESDVNSVRYYPSGDAFASGSDDATCRLYD 268 (354)
T ss_dssp EEEECCCS-----SCCEEEEEETTSCEEEEET---TTCCEEEEECC----CSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEeCC-----CCCEEEEEeCCCeEEEEEC---CCCcEEEEecC----CCCCeEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 99998862 2679999999999999994 56777766521 1223567889999887 677899999999
Q ss_pred ccc----------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEE
Q 000054 2449 IPK----------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVT 2518 (2548)
Q Consensus 2449 i~~----------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vt 2518 (2548)
+.. .+...+.+++|+|+|++|++|+.||+|++||+.+++.+..+ .+|.+. |+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l--------------~~h~~~----v~ 330 (354)
T 2pbi_B 269 LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL--------------FGHENR----VS 330 (354)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE--------------CCCSSC----EE
T ss_pred CCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE--------------ECCCCc----EE
Confidence 632 23457899999999999999999999999999999988766 677754 56
Q ss_pred EEEEcCCe--EEEEECCCcEEEEE
Q 000054 2519 DIQVVSRG--FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2519 sLafSPdG--LaSGS~DGtIrIWD 2540 (2548)
+++|+|+| |++|+.||+|++|+
T Consensus 331 ~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 331 TLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEECCCCCEEEEEcCCCCEEecC
Confidence 77999999 99999999999996
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-29 Score=308.06 Aligned_cols=241 Identities=17% Similarity=0.197 Sum_probs=196.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|.+++|+|++ .+++|+.||+|+|||+.+++.....+. ...+|.+.|++++|+|+|++|++|+.||+|++||++
T Consensus 85 v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~------~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~ 157 (344)
T 4gqb_B 85 VADLTWVGER-GILVASDSGAVELWELDENETLIVSKF------CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA 157 (344)
T ss_dssp EEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEE------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeec------cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 5899999985 688999999999999999887655432 112466999999999999999999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCC-EEEEEeccCCCCeEEEEECCCCCCCcceeee--ccCCCeEEEEEcc
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSSRASIT--CHEGGARSISVFD 2376 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGs-lLATgG~SS~DGtVrIWDl~t~~~k~v~sl~--gHs~~VtSLafsP 2376 (2548)
+++.+ ..+.+|...|.+ |++++. ++++++ .|++|++||+++ .++...+. .|...+.+++|+|
T Consensus 158 ~~~~~--------~~~~~h~~~V~~~~~~~~~~~~l~s~s---~D~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~p 224 (344)
T 4gqb_B 158 QQVVL--------SSYRAHAAQVTCVAASPHKDSVFLSCS---EDNRILLWDTRC--PKPASQIGCSAPGYLPTSLAWHP 224 (344)
T ss_dssp TTEEE--------EEECCCSSCEEEEEECSSCTTEEEEEE---TTSCEEEEETTS--SSCEEECC----CCCEEEEEECS
T ss_pred CCcEE--------EEEcCcCCceEEEEecCCCCCceeeec---cccccccccccc--cceeeeeecceeeccceeeeecC
Confidence 87543 347889998875 888874 778875 899999999987 45555543 5667899999999
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCC
Q 000054 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGS 2456 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~ 2456 (2548)
.+ +.++++|+.||+|++||+ .+++++..+ .+|...
T Consensus 225 ~~------~~~l~sg~~dg~v~~wd~---~~~~~~~~~------------------------------------~~h~~~ 259 (344)
T 4gqb_B 225 QQ------SEVFVFGDENGTVSLVDT---KSTSCVLSS------------------------------------AVHSQC 259 (344)
T ss_dssp SC------TTEEEEEETTSEEEEEES---CC--CCEEE------------------------------------ECCSSC
T ss_pred CC------CcceEEeccCCcEEEEEC---CCCcEEEEE------------------------------------cCCCCC
Confidence 85 789999999999999994 456666665 789999
Q ss_pred EEEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEEEC
Q 000054 2457 VTRISTVPNT-SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGG 2532 (2548)
Q Consensus 2457 VtsLafSPdG-~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~ 2532 (2548)
|++++|+|++ ++|++|+.||+|+|||+++++++. +.+|.+. |++++|+|++ |+|||.
T Consensus 260 v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~---------------~~~H~~~----V~~v~~sp~~~~llas~s~ 320 (344)
T 4gqb_B 260 VTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR---------------SQAHRDF----VRDATWSPLNHSLLTTVGW 320 (344)
T ss_dssp EEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE---------------ECCCSSC----EEEEEECSSSTTEEEEEET
T ss_pred EEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE---------------EcCCCCC----EEEEEEeCCCCeEEEEEcC
Confidence 9999999998 689999999999999999988653 2678754 5677999998 669999
Q ss_pred CCcEEEEECCCCcc
Q 000054 2533 DGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2533 DGtIrIWDL~sg~l 2546 (2548)
||+|++|+++++.+
T Consensus 321 D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 321 DHQVVHHVVPTEPL 334 (344)
T ss_dssp TSCEEEEECCC---
T ss_pred CCeEEEEECCCCCC
Confidence 99999999987643
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9e-29 Score=302.83 Aligned_cols=281 Identities=14% Similarity=0.215 Sum_probs=220.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+|+|++||+|+.|++|+|||+.++......... .+|.+.|++++|+|++++|++|+.||+|++||+.
T Consensus 19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~-------~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~ 91 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS-------EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKN 91 (345)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEEC-------SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeec-------cccCCcEEEEEECCCCCEEEEEECCCcEEEEEcc
Confidence 689999999999999999999999999887654333222 2466999999999999999999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCC-CcceeeeccCCCeEEEEEccCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPT-SSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~-k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
.+... ....+.+|...|.+ |+|++++|++++ .|++|++||++.... .++..+.+|...|.+++|+|+
T Consensus 92 ~~~~~------~~~~~~~h~~~v~~v~~sp~~~~l~s~s---~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~- 161 (345)
T 3fm0_A 92 QDDFE------CVTTLEGHENEVKSVAWAPSGNLLATCS---RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS- 161 (345)
T ss_dssp CC-EE------EEEEECCCSSCEEEEEECTTSSEEEEEE---TTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSS-
T ss_pred CCCeE------EEEEccCCCCCceEEEEeCCCCEEEEEE---CCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCC-
Confidence 65321 22457889988874 899999999996 899999999975322 346678899999999999998
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCCccccCc--eeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEccc---
Q 000054 2379 LGSGSVSPLIVTGGKGGDVGIHDFRYIATGK--TKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIPK--- 2451 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk--~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~~--- 2451 (2548)
+.+|++|+.||+|++||++ +++ +...+. .+ ......++|+|+|++ +++.|+.+++|+...
T Consensus 162 ------~~~l~s~s~d~~i~~w~~~---~~~~~~~~~~~---~h-~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~ 228 (345)
T 3fm0_A 162 ------QELLASASYDDTVKLYREE---EDDWVCCATLE---GH-ESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGN 228 (345)
T ss_dssp ------SSCEEEEETTSCEEEEEEE---TTEEEEEEEEC---CC-SSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTC
T ss_pred ------CCEEEEEeCCCcEEEEEec---CCCEEEEEEec---CC-CCceEEEEECCCCCEEEEEeCCCeEEEeccccCCC
Confidence 7899999999999999953 343 223331 11 223567889999987 677899999998521
Q ss_pred ---------------------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcE----EEEecccccccccccCcc
Q 000054 2452 ---------------------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQL----VYHWSKLHERHTFLQPSS 2506 (2548)
Q Consensus 2452 ---------------------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgel----l~tL~~~Hs~hsfl~~tl 2506 (2548)
.|...|++++|+|++..|++++.|+.|++|+...+.. ...+ .....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~---------~~~~~ 299 (345)
T 3fm0_A 229 EQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSL---------TAHLH 299 (345)
T ss_dssp TTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEE---------EEEET
T ss_pred CccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEE---------Eeeec
Confidence 2888999999999999999999999999999875431 1111 00113
Q ss_pred cCCCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCCCc
Q 000054 2507 RGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2507 ~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.+|.+. |++++|+|++ |+|||.||+|++|++.++.
T Consensus 300 ~~h~~~----V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 300 QAHSQD----VNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp TSSSSC----EEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred ccccCc----EeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 577754 5777999986 8899999999999998764
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-29 Score=306.72 Aligned_cols=289 Identities=16% Similarity=0.257 Sum_probs=227.9
Q ss_pred CccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000054 2215 ATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2215 ~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
.++.+|. |.+++|+|++++|++|+.||+|+|||..+++....+.. |...|.+++|+|+|++|++|+.|
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~----------h~~~v~~~~~s~~g~~las~~~d 129 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL----------HCPWVMECAFAPNGQSVACGGLD 129 (380)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC----------CCTTCCCCEECTTSSEEEECCSS
T ss_pred ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEec----------CCCCEEEEEECCCCCEEEEeeCC
Confidence 3455555 89999999999999999999999999999988887753 45889999999999999999999
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCC-CCEEEEEeccCCCCeEEEEECCCCCCCcceee-----ec
Q 000054 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSS-GSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-----TC 2364 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpd-GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-----~g 2364 (2548)
+.|++||+.+..... ........+.+|...|.+ +.|+ +..+++|+ .|++|++||+++ ++.+..+ .+
T Consensus 130 ~~v~iw~~~~~~~~~-~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s---~D~~i~~wd~~~--~~~~~~~~~~~~~~ 203 (380)
T 3iz6_a 130 SACSIFNLSSQADRD-GNMPVSRVLTGHKGYASSCQYVPDQETRLITGS---GDQTCVLWDVTT--GQRISIFGSEFPSG 203 (380)
T ss_dssp SCCEEEECCCCSSCC-CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEEC---TTSCEEEECTTT--CCEEEEECCCSSSS
T ss_pred CcEEEEECCCCcccc-CCccceeeccCCCcceEEEEEecCCCCEEEEEC---CCCcEEEEEcCC--CcEEEEeecccCCC
Confidence 999999997543111 111223457788887763 6665 45788875 899999999986 5555555 57
Q ss_pred cCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCC
Q 000054 2365 HEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQ 2442 (2548)
Q Consensus 2365 Hs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~ 2442 (2548)
|...|.++.+++.+ +.++++|+.||+|++||++. .++.+..+.. .......+.|+|+|.. .++.|+
T Consensus 204 h~~~v~~~~~~~~~------~~~l~sgs~D~~v~~wd~~~--~~~~~~~~~~----h~~~v~~v~~~p~~~~l~s~s~D~ 271 (380)
T 3iz6_a 204 HTADVLSLSINSLN------ANMFISGSCDTTVRLWDLRI--TSRAVRTYHG----HEGDINSVKFFPDGQRFGTGSDDG 271 (380)
T ss_dssp CCSCEEEEEECSSS------CCEEEEEETTSCEEEEETTT--TCCCCEEECC----CSSCCCEEEECTTSSEEEEECSSS
T ss_pred CccCeEEEEeecCC------CCEEEEEECCCeEEEEECCC--CCcceEEECC----cCCCeEEEEEecCCCeEEEEcCCC
Confidence 99999999998864 78999999999999999763 2344444421 1223557889999987 678889
Q ss_pred CceEEEcccC---------------CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCccc
Q 000054 2443 NGMLWYIPKA---------------HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSR 2507 (2548)
Q Consensus 2443 sv~Iwdi~~g---------------H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~ 2507 (2548)
.+++||+..+ +...|++++|+|+|++|++|+.||.|++||+.+++.+..+.. ...
T Consensus 272 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~----------~~~ 341 (380)
T 3iz6_a 272 TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGT----------LQN 341 (380)
T ss_dssp CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECC----------SCS
T ss_pred eEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEec----------ccC
Confidence 9999996432 123489999999999999999999999999999998876621 125
Q ss_pred CCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2508 GFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2508 GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+|.+. |++++|+|+| |+|||.||+|++|++.+..
T Consensus 342 ~h~~~----v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 342 SHEGR----ISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SCCCC----CCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCCc----eEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 67654 4677999999 8999999999999998763
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-28 Score=289.40 Aligned_cols=273 Identities=18% Similarity=0.243 Sum_probs=223.1
Q ss_pred ccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000054 2216 TVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
++.+|. |.+++|+|++++|++|+.||.|++|+..+++....+.. |...|.+++|+|++++|++|+.||
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~----------h~~~v~~~~~~~~~~~l~s~~~d~ 87 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG----------HKLGISDVAWSSDSNLLVSASDDK 87 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC----------CSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhcc----------CCCceEEEEEcCCCCEEEEECCCC
Confidence 344443 79999999999999999999999999999887777632 558899999999999999999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
.|++||+++++.. ..+.+|...|.+ ++|+++++++++ .|+.|++||++. .+.+..+..|...|.+
T Consensus 88 ~i~vwd~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~s~~---~d~~i~iwd~~~--~~~~~~~~~~~~~v~~ 154 (312)
T 4ery_A 88 TLKIWDVSSGKCL--------KTLKGHSNYVFCCNFNPQSNLIVSGS---FDESVRIWDVKT--GKCLKTLPAHSDPVSA 154 (312)
T ss_dssp EEEEEETTTCCEE--------EEEECCSSCEEEEEECSSSSEEEEEE---TTSCEEEEETTT--CCEEEEECCCSSCEEE
T ss_pred EEEEEECCCCcEE--------EEEcCCCCCEEEEEEcCCCCEEEEEe---CCCcEEEEECCC--CEEEEEecCCCCcEEE
Confidence 9999999987533 346778888764 899999999987 899999999986 6778889999999999
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI 2449 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi 2449 (2548)
+.|+|+ +.++++|+.||.|++||+ .+++.+..+.. ........+.++|++++ +++.++.+++|++
T Consensus 155 ~~~~~~-------~~~l~~~~~d~~i~~wd~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 221 (312)
T 4ery_A 155 VHFNRD-------GSLIVSSSYDGLCRIWDT---ASGQCLKTLID---DDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 221 (312)
T ss_dssp EEECTT-------SSEEEEEETTSCEEEEET---TTCCEEEEECC---SSCCCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred EEEcCC-------CCEEEEEeCCCcEEEEEC---CCCceeeEEec---cCCCceEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 999998 789999999999999995 45666655421 12233456789999987 6677889999996
Q ss_pred c--------cCCCCCEE---EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEE
Q 000054 2450 P--------KAHLGSVT---RISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVT 2518 (2548)
Q Consensus 2450 ~--------~gH~~~Vt---sLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vt 2518 (2548)
. .+|...+. .....+++.+|++|+.||.|++||+.+++.+.++ .+|.+. |.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~--------------~~h~~~----v~ 283 (312)
T 4ery_A 222 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKL--------------QGHTDV----VI 283 (312)
T ss_dssp TTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEE--------------CCCSSC----EE
T ss_pred CCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhh--------------hccCCc----EE
Confidence 3 34554332 2233467899999999999999999999998876 677654 56
Q ss_pred EEEEcCCe--EEEEE--CCCcEEEEECC
Q 000054 2519 DIQVVSRG--FLSCG--GDGSVKLIQLE 2542 (2548)
Q Consensus 2519 sLafSPdG--LaSGS--~DGtIrIWDL~ 2542 (2548)
+++|+|++ +++++ .||+|++|+.+
T Consensus 284 ~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 284 STACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEeecCcCCceEEEEccCCccEEEecCC
Confidence 77999999 77776 69999999975
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-28 Score=292.96 Aligned_cols=291 Identities=16% Similarity=0.212 Sum_probs=223.3
Q ss_pred CCccCCeE--EEEEEEcCCC-CEEEEEECCCeEEEEEcCCCce--eEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEE
Q 000054 2214 PATVENIS--TRAFSSHPLR-PFFLVGSSNTHIYLWEFGKDKA--TATYGVLPAANVPPPYALASISALQFDHYGHRFAS 2288 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPdG-~~LASGS~DGsVrLWDl~tg~~--l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaS 2288 (2548)
..++.+|. |.+++|+|++ ++|++|+.|++|++||+..... ...+..+. +|...|++++|+|++++|++
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-------~h~~~v~~~~~s~dg~~l~s 82 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-------GHSHIVQDCTLTADGAYALS 82 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE-------CCSSCEEEEEECTTSSEEEE
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe-------CCcccEEEEEECCCCCEEEE
Confidence 33455665 7999999965 8999999999999999874321 11122222 35689999999999999999
Q ss_pred EeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccC
Q 000054 2289 AALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE 2366 (2548)
Q Consensus 2289 GS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs 2366 (2548)
|+.||+|++||+++++.. ..+.+|...|.+ ++|++.++++++ .|++|++||++ ..++..+.+|.
T Consensus 83 ~s~D~~v~~wd~~~~~~~--------~~~~~h~~~v~~~~~~~~~~~l~s~s---~D~~i~vwd~~---~~~~~~~~~h~ 148 (319)
T 3frx_A 83 ASWDKTLRLWDVATGETY--------QRFVGHKSDVMSVDIDKKASMIISGS---RDKTIKVWTIK---GQCLATLLGHN 148 (319)
T ss_dssp EETTSEEEEEETTTTEEE--------EEEECCSSCEEEEEECTTSCEEEEEE---TTSCEEEEETT---SCEEEEECCCS
T ss_pred EeCCCEEEEEECCCCCee--------EEEccCCCcEEEEEEcCCCCEEEEEe---CCCeEEEEECC---CCeEEEEeccC
Confidence 999999999999987532 347789988875 899999999986 89999999996 46788888999
Q ss_pred CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCc
Q 000054 2367 GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNG 2444 (2548)
Q Consensus 2367 ~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv 2444 (2548)
..|.++.+.|.. .....+..+++|+.||.|++||++ +++....+.. .......++++|+|++ .++.|+.+
T Consensus 149 ~~v~~~~~~~~~-~~~~~~~~l~s~~~d~~i~~wd~~---~~~~~~~~~~----h~~~v~~~~~sp~g~~l~s~~~dg~i 220 (319)
T 3frx_A 149 DWVSQVRVVPNE-KADDDSVTIISAGNDKMVKAWNLN---QFQIEADFIG----HNSNINTLTASPDGTLIASAGKDGEI 220 (319)
T ss_dssp SCEEEEEECCC-------CCEEEEEETTSCEEEEETT---TTEEEEEECC----CCSCEEEEEECTTSSEEEEEETTCEE
T ss_pred CcEEEEEEccCC-CCCCCccEEEEEeCCCEEEEEECC---cchhheeecC----CCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 999999999862 011124589999999999999954 4555554421 1223556789999987 56788999
Q ss_pred eEEEccc-------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecE
Q 000054 2445 MLWYIPK-------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGV 2517 (2548)
Q Consensus 2445 ~Iwdi~~-------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~V 2517 (2548)
++|++.. .+...|.+++|+|++.+|++++.+ .+++|++..+..+..+.....+. ...|. ..+
T Consensus 221 ~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~------~~~~~----~~v 289 (319)
T 3frx_A 221 MLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGY------SKAAE----PHA 289 (319)
T ss_dssp EEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTC------CGGGC----CCE
T ss_pred EEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcccccc------ccCcC----cce
Confidence 9999643 245689999999999999988755 59999999888887663211111 12233 346
Q ss_pred EEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000054 2518 TDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2518 tsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
.+++|+|+| |++|+.||+|++||+.++
T Consensus 290 ~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 290 VSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred eEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 788999999 899999999999998764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.5e-28 Score=291.97 Aligned_cols=279 Identities=15% Similarity=0.162 Sum_probs=204.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc--eeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK--ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~--~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
|.+++|+|+ +|++|+.|++|++||+.++. ....+. ...|.+.|++++|+|++++|++|+.||+|++||
T Consensus 17 v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~--------~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~ 86 (330)
T 2hes_X 17 IWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLD--------ETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA 86 (330)
T ss_dssp EEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEEC--------TTCCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEe--------cCCccCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 688999887 99999999999999998753 333331 123668999999999999999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCC--CCcceeeeccCCCeEEEEEc
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPP--TSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~--~k~v~sl~gHs~~VtSLafs 2375 (2548)
++...... ........+.+|...|.+ |+|+|++|++++ .|++|++||++... .+++..+.+|...|++++|+
T Consensus 87 ~~~~~~~~-~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s---~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 87 KEESADRT-FEMDLLAIIEGHENEVKGVAWSNDGYYLATCS---RDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp C--------CCCEEEEEEC----CEEEEEECTTSCEEEEEE---TTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred cccCcCcc-ccceeEEEEcCCCCcEEEEEECCCCCEEEEEe---CCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 96432110 111233457889998874 899999999996 89999999995321 24567788999999999999
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCC--CCC--ccCCCCCceEEEccc
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQT--GSG--SKPGDQNGMLWYIPK 2451 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpd--Gk~--v~s~D~sv~Iwdi~~ 2451 (2548)
|+ +.+|++|+.||+|++||.+. ...+++..+. .+. .....+.|+|+ +.. .++.|+.+++|++..
T Consensus 163 p~-------~~~l~s~s~D~~i~iW~~~~-~~~~~~~~~~---~h~-~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 163 PS-------EALLASSSYDDTVRIWKDYD-DDWECVAVLN---GHE-GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp SS-------SSEEEEEETTSCEEEEEEET-TEEEEEEEEC---CCS-SCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred CC-------CCEEEEEcCCCeEEEEECCC-CCeeEEEEcc---CCC-CcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence 98 78999999999999999541 1124555542 111 22445778888 443 677899999998632
Q ss_pred -----------------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcE--EEEecccccccccccCcccCCCCc
Q 000054 2452 -----------------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQL--VYHWSKLHERHTFLQPSSRGFGGV 2512 (2548)
Q Consensus 2452 -----------------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgel--l~tL~~~Hs~hsfl~~tl~GH~~~ 2512 (2548)
.|...|++++|++++ +|++|+.||+|++||..+++. +... +.+|..
T Consensus 231 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-------------~~~h~~- 295 (330)
T 2hes_X 231 DDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-------------ALCHGV- 295 (330)
T ss_dssp ECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-------------SCTTTT-
T ss_pred CCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-------------cccccc-
Confidence 289999999999765 899999999999999987742 3222 245653
Q ss_pred eeecEEEEEEcC--Ce--EEEEECCCcEEEEECCC
Q 000054 2513 VRAGVTDIQVVS--RG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2513 V~a~VtsLafSP--dG--LaSGS~DGtIrIWDL~s 2543 (2548)
..|.+++|+| ++ |+|||.||+|++|++++
T Consensus 296 --~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 296 --YEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp --SCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred --ceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 1357779999 56 99999999999999875
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=314.02 Aligned_cols=284 Identities=17% Similarity=0.181 Sum_probs=218.3
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
+.+++|+|+++ .|++|+.|++|++||..+++...++.. |.+.|++++|+|+|++|++|+.||+|++||+
T Consensus 150 v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~----------H~~~V~~v~fspdg~~las~s~D~~i~lwd~ 219 (611)
T 1nr0_A 150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE----------HTKFVHSVRYNPDGSLFASTGGDGTIVLYNG 219 (611)
T ss_dssp EEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC----------CSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc----------ccCceEEEEECCCCCEEEEEECCCcEEEEEC
Confidence 79999999987 599999999999999988877776632 5689999999999999999999999999999
Q ss_pred CCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCC----------------------
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPT---------------------- 2356 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~---------------------- 2356 (2548)
.+++....... ......+|...|.+ |+|+|++|++++ .|++|++||+.+...
T Consensus 220 ~~g~~~~~~~~-~~~~~~~h~~~V~~v~~spdg~~l~s~s---~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (611)
T 1nr0_A 220 VDGTKTGVFED-DSLKNVAHSGSVFGLTWSPDGTKIASAS---ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ 295 (611)
T ss_dssp TTCCEEEECBC-TTSSSCSSSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSS
T ss_pred CCCcEeeeecc-ccccccccCCCEEEEEECCCCCEEEEEe---CCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCC
Confidence 88764332100 00112278888874 899999999997 899999999875210
Q ss_pred -------------------CcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecC-
Q 000054 2357 -------------------SSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHS- 2416 (2548)
Q Consensus 2357 -------------------k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~- 2416 (2548)
+....+.+|...|++++|+|+ +++|++|+.||+|++||++ +++....+..
T Consensus 296 ~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spd-------g~~l~s~s~D~~v~~Wd~~---~~~~~~~~~~~ 365 (611)
T 1nr0_A 296 ALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSAD-------GKTLFSADAEGHINSWDIS---TGISNRVFPDV 365 (611)
T ss_dssp CEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTT-------SSEEEEEETTSCEEEEETT---TCCEEECSSCS
T ss_pred EEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCC-------CCEEEEEeCCCcEEEEECC---CCceeeecccC
Confidence 012345689999999999998 7899999999999999954 3332221100
Q ss_pred ------------------------------CCC-----------------------C-----------------------
Q 000054 2417 ------------------------------DRG-----------------------G----------------------- 2420 (2548)
Q Consensus 2417 ------------------------------~~~-----------------------~----------------------- 2420 (2548)
... .
T Consensus 366 h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~ 445 (611)
T 1nr0_A 366 HATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV 445 (611)
T ss_dssp CSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE
T ss_pred CcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee
Confidence 000 0
Q ss_pred -CCccccccccCCCCCC--ccCCCCCceEEEcc---------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-Cc
Q 000054 2421 -SSINTCAHADAQTGSG--SKPGDQNGMLWYIP---------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA-AQ 2487 (2548)
Q Consensus 2421 -s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~---------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~T-ge 2487 (2548)
.......++++|||++ +++.|+.+++|++. .+|...|++++|+|+|++|++++.|++|++||+.+ ++
T Consensus 446 ~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~ 525 (611)
T 1nr0_A 446 PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE 525 (611)
T ss_dssp ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE
T ss_pred ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCc
Confidence 0011235678999988 67788899999853 35899999999999999999999999999999987 55
Q ss_pred EEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2488 LVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2488 ll~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
++... .+.+|.+. |++++|+|+| |+|||.|++|++|+++++.
T Consensus 526 ~~~~~------------~~~~H~~~----V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 526 LAHTN------------SWTFHTAK----VACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp ESCCC------------CCCCCSSC----EEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred eeeee------------eeeecccc----eeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 43220 02447654 5677999999 9999999999999998753
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-27 Score=295.82 Aligned_cols=281 Identities=21% Similarity=0.302 Sum_probs=221.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCC--------CCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANV--------PPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~--------~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
|.+++|+|+|++|++|+ ++.+++|++.+++.+..+........ ....+...|++++|+|+|++|++|+.||
T Consensus 67 V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~ 145 (393)
T 1erj_A 67 VCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR 145 (393)
T ss_dssp CCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCC
Confidence 68999999999999976 68999999999988777653221100 0012234599999999999999999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
+|++||+++++.. ..+.+|...|.+ |+|+++.+++++ .|++|++||+++ +++...+. +...+.+
T Consensus 146 ~i~iwd~~~~~~~--------~~~~~h~~~v~~~~~~p~~~~l~s~s---~d~~v~iwd~~~--~~~~~~~~-~~~~v~~ 211 (393)
T 1erj_A 146 LIRIWDIENRKIV--------MILQGHEQDIYSLDYFPSGDKLVSGS---GDRTVRIWDLRT--GQCSLTLS-IEDGVTT 211 (393)
T ss_dssp CEEEEETTTTEEE--------EEECCCSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTT--TEEEEEEE-CSSCEEE
T ss_pred eEEEEECCCCcEE--------EEEccCCCCEEEEEEcCCCCEEEEec---CCCcEEEEECCC--CeeEEEEE-cCCCcEE
Confidence 9999999877532 347789988875 899999999986 899999999986 45555554 6778999
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCC---CCCCccccccccCCCCCC--ccCCCCCceE
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDR---GGSSINTCAHADAQTGSG--SKPGDQNGML 2446 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~---~~s~~~~~~vafSpdGk~--v~s~D~sv~I 2446 (2548)
++++|.+ +.++++|+.||.|++||+ .+++.+..+.... .........+.|+|+|+. .++.|+.+++
T Consensus 212 ~~~~~~~------~~~l~~~s~d~~v~iwd~---~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~ 282 (393)
T 1erj_A 212 VAVSPGD------GKYIAAGSLDRAVRVWDS---ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 282 (393)
T ss_dssp EEECSTT------CCEEEEEETTSCEEEEET---TTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEEECCC------CCEEEEEcCCCcEEEEEC---CCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEE
Confidence 9999954 789999999999999994 4566665542111 112234567889999987 6677899999
Q ss_pred EEcc--------------------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcc
Q 000054 2447 WYIP--------------------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSS 2506 (2548)
Q Consensus 2447 wdi~--------------------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl 2506 (2548)
|++. .+|...|.+++|+|++.+|++|+.||.|++||+.+++++..+
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l-------------- 348 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML-------------- 348 (393)
T ss_dssp EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE--------------
T ss_pred EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEE--------------
Confidence 9853 368899999999999999999999999999999999988766
Q ss_pred cCCCCceeecEEEEEEcC------Ce--EEEEECCCcEEEEECCCC
Q 000054 2507 RGFGGVVRAGVTDIQVVS------RG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2507 ~GH~~~V~a~VtsLafSP------dG--LaSGS~DGtIrIWDL~sg 2544 (2548)
.+|.+. |.+++|++ ++ |+|||.||+|++|++...
T Consensus 349 ~~h~~~----v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 349 QGHRNS----VISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp ECCSSC----EEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred CCCCCC----EEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 677754 45668876 55 899999999999998653
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-26 Score=274.97 Aligned_cols=272 Identities=14% Similarity=0.176 Sum_probs=215.9
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
.+++|++++ +||+| .|++|+|||..+++.+..+.. ..|...|++++|+|++++|++|+.||+|++||+++
T Consensus 29 ~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~--------~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~ 98 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQM--------EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ 98 (318)
T ss_dssp BCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEEC--------CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred eEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEe--------cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC
Confidence 568999886 66665 599999999999998888753 23568899999999999999999999999999998
Q ss_pred CcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCC
Q 000054 2303 GGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSG 2382 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~g 2382 (2548)
++.. ..+.+|...+.++++++..+++++ .++.+++|+.... ...+..+.+|...+..+.+.+.
T Consensus 99 ~~~~--------~~~~~h~~~~~~~~~~~~~l~s~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----- 161 (318)
T 4ggc_A 99 QKRL--------RNMTSHSARVGSLSWNSYILSSGS---RSGHIHHHDVRVA-EHHVATLSGHSQEVCGLRWAPD----- 161 (318)
T ss_dssp TEEE--------EEEECCSSCEEEEEEETTEEEEEE---TTSEEEEEETTSS-SCEEEEEECCSSCEEEEEECTT-----
T ss_pred ceeE--------EEecCccceEEEeecCCCEEEEEe---cCCceEeeecCCC-ceeEEEEcCccCceEEEEEcCC-----
Confidence 8643 346789888888888899999986 8999999998763 4567788899999999999988
Q ss_pred CCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-----ccCCCCCceEEEccc------
Q 000054 2383 SVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-----SKPGDQNGMLWYIPK------ 2451 (2548)
Q Consensus 2383 s~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-----v~s~D~sv~Iwdi~~------ 2451 (2548)
+.++++++.||+|++||++. ++..................+.+.+++.. .+..++.+++|+...
T Consensus 162 --~~~l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~ 236 (318)
T 4ggc_A 162 --GRHLASGGNDNLVNVWPSAP---GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA 236 (318)
T ss_dssp --SSEEEEEETTSCEEEEESSC---BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEE
T ss_pred --CCEEEEEecCcceeEEECCC---CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccc
Confidence 78999999999999999653 32211110000111112334556666543 355677899998533
Q ss_pred -CCCCCEEEEEEeCCCCEEEEEe--CCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--
Q 000054 2452 -AHLGSVTRISTVPNTSLFLTGS--KDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-- 2526 (2548)
Q Consensus 2452 -gH~~~VtsLafSPdG~~LaSGS--~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-- 2526 (2548)
.|...+..+.|+|++..+++++ .||.|++||+++++++.++ .||.+. |++++|+|+|
T Consensus 237 ~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l--------------~gH~~~----V~~l~~spdg~~ 298 (318)
T 4ggc_A 237 VDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL--------------KGHTSR----VLSLTMSPDGAT 298 (318)
T ss_dssp EECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE--------------CCCSSC----EEEEEECTTSSC
T ss_pred ccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE--------------cCCCCC----EEEEEEcCCCCE
Confidence 4677899999999999888765 7999999999999999877 678754 5777999999
Q ss_pred EEEEECCCcEEEEECCCC
Q 000054 2527 FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2527 LaSGS~DGtIrIWDL~sg 2544 (2548)
|+|||.||+|++||+.+.
T Consensus 299 l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 299 VASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEEETTTEEEEECCSCC
T ss_pred EEEEecCCeEEEEECCCC
Confidence 999999999999999653
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-27 Score=310.01 Aligned_cols=285 Identities=18% Similarity=0.181 Sum_probs=225.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+|+|++|++++ ++.|++|++.+++....+.. |.+.|++++|+|+|++|++|+.||+|++||+.
T Consensus 21 ~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~----------h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~ 89 (611)
T 1nr0_A 21 AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTE----------HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTT 89 (611)
T ss_dssp CCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECC----------CSSCEEEEEECTTSSEEEEEETTSEEEEEESS
T ss_pred eeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecC----------CCCceEEEEECCCCcEEEEEeCCCCEEEeECC
Confidence 36788999999999987 56999999998887777643 56899999999999999999999999999997
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCC--CCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSN--GINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~--DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
+++... ...+.+|...|.+ |+|+|+.+++++.. . ++.|++||. ++....+.+|.+.|++++|+|+
T Consensus 90 ~~~~~~------~~~~~~~~~~v~~v~fs~dg~~l~~~~~~-~~~~~~v~~wd~----~~~~~~l~gh~~~v~~v~f~p~ 158 (611)
T 1nr0_A 90 QTTHIL------KTTIPVFSGPVKDISWDSESKRIAAVGEG-RERFGHVFLFDT----GTSNGNLTGQARAMNSVDFKPS 158 (611)
T ss_dssp STTCCE------EEEEECSSSCEEEEEECTTSCEEEEEECC-SSCSEEEEETTT----CCBCBCCCCCSSCEEEEEECSS
T ss_pred CCccee------eEeecccCCceEEEEECCCCCEEEEEECC-CCceeEEEEeeC----CCCcceecCCCCCceEEEECCC
Confidence 654221 2346778888874 99999999998721 1 157888885 3466778899999999999998
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEcc-----
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIP----- 2450 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~----- 2450 (2548)
. ...|++|+.|++|++|| ..++++...+.. + ......++|+|+|++ .++.|+.+++|+..
T Consensus 159 ~------~~~l~s~s~D~~v~lwd---~~~~~~~~~l~~---H-~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~ 225 (611)
T 1nr0_A 159 R------PFRIISGSDDNTVAIFE---GPPFKFKSTFGE---H-TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKT 225 (611)
T ss_dssp S------SCEEEEEETTSCEEEEE---TTTBEEEEEECC---C-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred C------CeEEEEEeCCCeEEEEE---CCCCeEeeeecc---c-cCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEe
Confidence 3 34799999999999999 455666666521 1 224567899999987 67889999999842
Q ss_pred ----c------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccc--cc------------------
Q 000054 2451 ----K------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHER--HT------------------ 2500 (2548)
Q Consensus 2451 ----~------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~--hs------------------ 2500 (2548)
. +|.+.|.+++|+|+|++|++|+.|++|++||+.+++++.+++..+.. ..
T Consensus 226 ~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~ 305 (611)
T 1nr0_A 226 GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 305 (611)
T ss_dssp EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCC
T ss_pred eeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCc
Confidence 2 79999999999999999999999999999999999988877421100 00
Q ss_pred ---------cccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2501 ---------FLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2501 ---------fl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.....+.||.+. |++++|+|+| |++++.||+|++||+.++.
T Consensus 306 i~~~~~~~~~~~~~~~gh~~~----v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 306 INFVNPELGSIDQVRYGHNKA----ITALSSSADGKTLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp EEEEETTTTEEEEEECCCSSC----EEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred EEEEeCCCCCcceEEcCCCCC----EEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence 001234677754 5777999999 9999999999999998764
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-26 Score=276.28 Aligned_cols=252 Identities=21% Similarity=0.219 Sum_probs=191.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCC--ceeEEEeccCCCCCCCCCCCCCeEEEEEcc--CCCEEEEEeCCCcEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKD--KATATYGVLPAANVPPPYALASISALQFDH--YGHRFASAALDGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg--~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP--dG~~LaSGS~DGtVrV 2297 (2548)
|.+++|+|+|++||+|+.|++|+|||+.++ +.+.++. +|.+.|++++|++ ++++|++|+.||+|++
T Consensus 12 V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~----------gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 12 IHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT----------GHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC----------CCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc----------cccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 689999999999999999999999999753 4445543 3669999999986 4899999999999999
Q ss_pred EEcCCCcccccccCccceeccCCcccEEE--EcCC--CCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSS--GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpd--GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
||++++... ....+.+|...|.+ |+|+ |.++++++ .|+.|++||++.........+.+|...|.+++
T Consensus 82 Wd~~~~~~~------~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s---~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~ 152 (297)
T 2pm7_B 82 WKEENGRWS------QIAVHAVHSASVNSVQWAPHEYGPMLLVAS---SDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 152 (297)
T ss_dssp EEBSSSCBC------CCEEECCCSSCEEEEEECCGGGCSEEEEEE---TTSEEEEEEBCSSSCBCCEEEECCSSCEEEEE
T ss_pred EEcCCCceE------EEEEeecCCCceeEEEeCcCCCCcEEEEEE---CCCcEEEEEecCCCceeeeeeecccCccceEe
Confidence 999876421 12346678888864 8887 88999986 89999999997632223567789999999999
Q ss_pred EccCCCCC------CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEE
Q 000054 2374 VFDNDLGS------GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLW 2447 (2548)
Q Consensus 2374 fsP~dlg~------gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iw 2447 (2548)
|+|+.... ...+.+|++|+.||+|++||++ +++.... +.
T Consensus 153 ~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~---~~~~~~~--------------------------------~~ 197 (297)
T 2pm7_B 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN---SDAQTYV--------------------------------LE 197 (297)
T ss_dssp ECCCC------------CCEEEEEETTSCEEEEEEE---TTTTEEE--------------------------------EE
T ss_pred ecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEc---CCCceEE--------------------------------EE
Confidence 99962000 0014699999999999999954 2321100 11
Q ss_pred EcccCCCCCEEEEEEeCCC---CEEEEEeCCCcEEEEECCCCc--EEEEecccccccccccCcccCCCCceeecEEEEEE
Q 000054 2448 YIPKAHLGSVTRISTVPNT---SLFLTGSKDGDVKLWDAKAAQ--LVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQV 2522 (2548)
Q Consensus 2448 di~~gH~~~VtsLafSPdG---~~LaSGS~DGtIrIWDl~Tge--ll~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLaf 2522 (2548)
..+.+|.+.|.+++|+|++ .+|++|+.||+|+|||++++. ...... ...+|.+ .|++++|
T Consensus 198 ~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~-----------~~~~~~~----~v~~~~~ 262 (297)
T 2pm7_B 198 STLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLL-----------KEEKFPD----VLWRASW 262 (297)
T ss_dssp EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEES-----------SSSCCSS----CEEEEEE
T ss_pred EEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeee-----------ecccCCC----cEEEEEE
Confidence 1237899999999999984 899999999999999998643 111110 0134543 4677899
Q ss_pred cCCe--EEEEECCCcEEEEECC
Q 000054 2523 VSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2523 SPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
+|+| |++++.||+|++|+..
T Consensus 263 s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 263 SLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp CSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCCCEEEEEcCCCcEEEEEEC
Confidence 9999 9999999999999986
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=287.53 Aligned_cols=293 Identities=15% Similarity=0.210 Sum_probs=216.4
Q ss_pred CccCCeE--EEEEEE-----cC-CCCEEEEEECCCeEEEEEcCCCce----eEEEeccCCCCCCCCCCCCCeEEEEEccC
Q 000054 2215 ATVENIS--TRAFSS-----HP-LRPFFLVGSSNTHIYLWEFGKDKA----TATYGVLPAANVPPPYALASISALQFDHY 2282 (2548)
Q Consensus 2215 ~tl~gV~--V~~Vsf-----SP-dG~~LASGS~DGsVrLWDl~tg~~----l~t~~~l~ghs~~~~~H~~~VtsVaFSPd 2282 (2548)
..+.+|. |.+++| ++ ++++|++|+.|++|++||+.+++. ......+. +|...|++++|+|+
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~-------~h~~~V~~~~~~~~ 87 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT-------GHNHFVSDLALSQE 87 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC-------CCSSCEEEEEECSS
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc-------cCCCceEEEEECCC
Confidence 3445554 788988 66 899999999999999999975432 11122222 35689999999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcce
Q 000054 2283 GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA 2360 (2548)
Q Consensus 2283 G~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~ 2360 (2548)
+.++++|+.||+|++||+++++.. ..+.+|...|.+ |+|+++++++++ .|++|++||+.. ....
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~~~~~--------~~~~~h~~~v~~v~~sp~~~~l~s~~---~d~~i~~wd~~~---~~~~ 153 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRTGTTY--------KRFVGHQSEVYSVAFSPDNRQILSAG---AEREIKLWNILG---ECKF 153 (343)
T ss_dssp TTEEEEEETTSEEEEEETTSSCEE--------EEEECCCSCEEEEEECSSTTEEEEEE---TTSCEEEEESSS---CEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCcEE--------EEEcCCCCcEEEEEECCCCCEEEEEc---CCCEEEEEeccC---Ccee
Confidence 999999999999999999987532 347789888874 899999999997 899999999973 2222
Q ss_pred ee---eccCCCeEEEEEccCCCC---CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCC
Q 000054 2361 SI---TCHEGGARSISVFDNDLG---SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTG 2434 (2548)
Q Consensus 2361 sl---~gHs~~VtSLafsP~dlg---~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdG 2434 (2548)
.. .+|...|.+++|+|.... ..+.+.++++|+.||+|++||.+ ++....+.. + ......++|+|+|
T Consensus 154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~----~~~~~~~~~---h-~~~v~~~~~s~~g 225 (343)
T 2xzm_R 154 SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN----FQIRYTFKA---H-ESNVNHLSISPNG 225 (343)
T ss_dssp ECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT----TEEEEEEEC---C-SSCEEEEEECTTS
T ss_pred eeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC----CceeEEEcC---c-cccceEEEECCCC
Confidence 22 378999999999997310 01123699999999999999943 233333311 1 1235668899999
Q ss_pred CC--ccCCCCCceEEEccc--------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEE--Eecccccccccc
Q 000054 2435 SG--SKPGDQNGMLWYIPK--------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVY--HWSKLHERHTFL 2502 (2548)
Q Consensus 2435 k~--v~s~D~sv~Iwdi~~--------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~--tL~~~Hs~hsfl 2502 (2548)
++ .++.|+.+++|++.. .+...|.+++|+|++.++++| .|+.|++||+.+++... ++... ....
T Consensus 226 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~-~~~~-- 301 (343)
T 2xzm_R 226 KYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAE-PITK-- 301 (343)
T ss_dssp SEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCC-SGGG--
T ss_pred CEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecC-cchh--
Confidence 98 667889999999732 256679999999999988755 58889999998776543 33110 0000
Q ss_pred cCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000054 2503 QPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2503 ~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
.....+|.+ .|.+++|+|+| |++|+.||+|++|+++++
T Consensus 302 ~~~~~~~~~----~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 302 AEGQKGKNP----QCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp BTTBCCSCC----CEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred hhhhcCCCC----ceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 011246654 35778999999 999999999999998765
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-26 Score=276.22 Aligned_cols=291 Identities=19% Similarity=0.261 Sum_probs=219.4
Q ss_pred CCccCCeE--EEEEEEcCC-CCEEEEEECCCeEEEEEcCCCceeE--EEeccCCCCCCCCCCCCCeEEEEEccCCCEEEE
Q 000054 2214 PATVENIS--TRAFSSHPL-RPFFLVGSSNTHIYLWEFGKDKATA--TYGVLPAANVPPPYALASISALQFDHYGHRFAS 2288 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPd-G~~LASGS~DGsVrLWDl~tg~~l~--t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaS 2288 (2548)
..++.+|. |.+++|+|+ +++|+||+.||+|+|||+.+++... ....+. +|.+.|++++|+|++++|++
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~-------~h~~~V~~~~~s~dg~~l~s 103 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR-------GHSHFVSDVVISSDGQFALS 103 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC-------CCSSCEEEEEECTTSSEEEE
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe-------CCCCCEEEEEECCCCCEEEE
Confidence 44567776 899999998 6899999999999999998754321 122222 35689999999999999999
Q ss_pred EeCCCcEEEEEcCCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccC
Q 000054 2289 AALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE 2366 (2548)
Q Consensus 2289 GS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs 2366 (2548)
|+.||.|++|+........ ....+...+ ..+++++..+++++ .|+.+++||+... ........+|.
T Consensus 104 ~~~d~~i~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~s~s---~d~~~~~~d~~~~-~~~~~~~~~~~ 171 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTTTR--------RFVGHTKDVLSVAFSSDNRQIVSGS---RDKTIKLWNTLGV-CKYTVQDESHS 171 (340)
T ss_dssp EETTSEEEEEETTTTEEEE--------EEECCSSCEEEEEECTTSSCEEEEE---TTSCEEEECTTSC-EEEEECSSSCS
T ss_pred EcccccceEEeecccceee--------eecCCCCceeEEEEeecCccceeec---CCCeEEEEEeCCC-ceEEEEecccc
Confidence 9999999999998764322 122333333 35888999999986 8999999998752 23345566899
Q ss_pred CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCc
Q 000054 2367 GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNG 2444 (2548)
Q Consensus 2367 ~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv 2444 (2548)
..+..++|+++. ...++++++.|+.|++|| ..+++.+..+.. + ......++++|+|++ +++.|+.+
T Consensus 172 ~~v~~~~~~~~~-----~~~~~~s~~~d~~i~i~d---~~~~~~~~~~~~---h-~~~v~~~~~s~~~~~l~s~s~Dg~i 239 (340)
T 4aow_A 172 EWVSCVRFSPNS-----SNPIIVSCGWDKLVKVWN---LANCKLKTNHIG---H-TGYLNTVTVSPDGSLCASGGKDGQA 239 (340)
T ss_dssp SCEEEEEECSCS-----SSCEEEEEETTSCEEEEE---TTTTEEEEEECC---C-SSCEEEEEECTTSSEEEEEETTCEE
T ss_pred CcccceEEccCC-----CCcEEEEEcCCCEEEEEE---CCCCceeeEecC---C-CCcEEEEEECCCCCEEEEEeCCCeE
Confidence 999999998873 256899999999999999 455666666521 1 123456789999988 66788999
Q ss_pred eEEEccc-------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecE
Q 000054 2445 MLWYIPK-------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGV 2517 (2548)
Q Consensus 2445 ~Iwdi~~-------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~V 2517 (2548)
++|++.. .+...|.++.|+|++.++ +++.|+.|++||++++..+..++..... ....+|.. .|
T Consensus 240 ~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~-----~~~~~h~~----~v 309 (340)
T 4aow_A 240 MLWDLNEGKHLYTLDGGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVIS-----TSSKAEPP----QC 309 (340)
T ss_dssp EEEETTTTEEEEEEECSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC------------CCCC----CE
T ss_pred EEEEeccCceeeeecCCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEecccccee-----eeccCCCC----CE
Confidence 9999643 355689999999988665 5567999999999999998877422211 12356764 45
Q ss_pred EEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2518 TDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2518 tsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
++++|+|+| |+||+.||+|++||+++|.
T Consensus 310 ~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 310 TSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 778999999 8999999999999999885
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-26 Score=269.67 Aligned_cols=275 Identities=14% Similarity=0.117 Sum_probs=225.2
Q ss_pred ccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000054 2216 TVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
.+.+|. +.+++| |++++|++|+.||.|++||+.+++....+.. |.+.|.+++|+|+++++++|+.||
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~dg 81 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYT----------GQGFLNSVCYDSEKELLLFGGKDT 81 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEE----------CSSCEEEEEEETTTTEEEEEETTS
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeec----------CCccEEEEEECCCCCEEEEecCCC
Confidence 344444 789999 9999999999999999999998887777653 458899999999999999999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
.|++|++...... .....+.+|...|.++..+++.+++++ .|+.|++||. .+.+..+..|...+.++.
T Consensus 82 ~i~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~l~~~~---~d~~i~~~d~----~~~~~~~~~~~~~v~~~~ 149 (313)
T 3odt_A 82 MINGVPLFATSGE-----DPLYTLIGHQGNVCSLSFQDGVVISGS---WDKTAKVWKE----GSLVYNLQAHNASVWDAK 149 (313)
T ss_dssp CEEEEETTCCTTS-----CC-CEECCCSSCEEEEEEETTEEEEEE---TTSEEEEEET----TEEEEEEECCSSCEEEEE
T ss_pred eEEEEEeeecCCC-----CcccchhhcccCEEEEEecCCEEEEEe---CCCCEEEEcC----CcEEEecccCCCceeEEE
Confidence 9999999765321 123446788888887666889999986 8999999992 567888889999999999
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEEcc--
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWYIP-- 2450 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwdi~-- 2450 (2548)
+.|.+ +..+++++.||.|++||.+ +....+. .........+.+++++.+ ++..++.+++|++.
T Consensus 150 ~~~~~------~~~l~~~~~d~~i~i~d~~-----~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~~~ 215 (313)
T 3odt_A 150 VVSFS------ENKFLTASADKTIKLWQND-----KVIKTFS---GIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMHTG 215 (313)
T ss_dssp EEETT------TTEEEEEETTSCEEEEETT-----EEEEEEC---SSCSSCEEEEEEEETTEEEEEETTSEEEEEETTTC
T ss_pred EccCC------CCEEEEEECCCCEEEEecC-----ceEEEEe---ccCcccEEEEEEcCCCeEEEccCCCeEEEEECCch
Confidence 99954 7899999999999999943 3444431 112233566788888887 67788899999853
Q ss_pred ------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcC
Q 000054 2451 ------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVS 2524 (2548)
Q Consensus 2451 ------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSP 2524 (2548)
.+|.+.|++++|+|++ .|++|+.||.|++||+++++++..+ .+|.+ .|.+++|+|
T Consensus 216 ~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~--------------~~~~~----~i~~~~~~~ 276 (313)
T 3odt_A 216 DVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVI--------------TLPAI----SIWSVDCMS 276 (313)
T ss_dssp CEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEE--------------ECSSS----CEEEEEECT
T ss_pred hhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEE--------------eccCc----eEEEEEEcc
Confidence 4699999999999999 5889999999999999999998877 44543 367789999
Q ss_pred Ce-EEEEECCCcEEEEECCCCcc
Q 000054 2525 RG-FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2525 dG-LaSGS~DGtIrIWDL~sg~l 2546 (2548)
++ +++++.||.|++||++++..
T Consensus 277 ~~~~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 277 NGDIIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp TSCEEEEETTSCEEEEESCGGGC
T ss_pred CCCEEEEeCCCcEEEEeCCCCce
Confidence 99 99999999999999987643
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-26 Score=284.69 Aligned_cols=271 Identities=14% Similarity=0.173 Sum_probs=218.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+..++|+++ ++||+|. |++|+|||..+|+....+.. ..|.+.|++|+|+|+|++|++|+.||+|++||++
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~--------~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~ 177 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQM--------EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 177 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEEC--------CSTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEe--------cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcC
Confidence 367889875 5777765 99999999999998877643 2356889999999999999999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
+++.. ..+.+|...+.++++++.++++++ .|+.+++||.... ...+..+.+|...+..+.+.|.
T Consensus 178 ~~~~~--------~~~~~h~~~v~~~s~~~~~l~sgs---~d~~i~~~d~~~~-~~~~~~~~~h~~~~~~~~~~~~---- 241 (420)
T 4gga_A 178 QQKRL--------RNMTSHSARVGSLSWNSYILSSGS---RSGHIHHHDVRVA-EHHVATLSGHSQEVCGLRWAPD---- 241 (420)
T ss_dssp TTEEE--------EEECCCSSCEEEEEEETTEEEEEE---TTSEEEEEETTSS-SCEEEEEECCSSCEEEEEECTT----
T ss_pred CCcEE--------EEEeCCCCceEEEeeCCCEEEEEe---CCCceeEeeeccc-ceeeEEecccccceeeeeecCC----
Confidence 87643 347789999999888999999986 8999999999863 4567788999999999999998
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCc-eeeeecCCCCCCCccccccccCCCCCC-----ccCCCCCceEEEcccC---
Q 000054 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGK-TKKHKHSDRGGSSINTCAHADAQTGSG-----SKPGDQNGMLWYIPKA--- 2452 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk-~l~tl~~~~~~s~~~~~~vafSpdGk~-----v~s~D~sv~Iwdi~~g--- 2452 (2548)
+.++++++.||.|++||.+...... .+... .........++++|++.. .++.|+.+++|++..+
T Consensus 242 ---g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~----~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~ 314 (420)
T 4gga_A 242 ---GRHLASGGNDNLVNVWPSAPGEGGWVPLQTF----TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 314 (420)
T ss_dssp ---SSEEEEEETTSCEEEEESSCCSSCSCCSEEE----CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE
T ss_pred ---CCeeeeeeccccceEEeeccccccceeeeee----cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc
Confidence 7899999999999999965311111 11111 111223455678887664 2456889999997542
Q ss_pred ----CCCCEEEEEEeCCCCEEEEEe--CCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe
Q 000054 2453 ----HLGSVTRISTVPNTSLFLTGS--KDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG 2526 (2548)
Q Consensus 2453 ----H~~~VtsLafSPdG~~LaSGS--~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG 2526 (2548)
+...|.++.|+|+++.+++++ .||.|+|||+.+++++.++ .||.+. |++++|+|+|
T Consensus 315 ~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l--------------~gH~~~----V~~l~~spdg 376 (420)
T 4gga_A 315 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL--------------KGHTSR----VLSLTMSPDG 376 (420)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE--------------CCCSSC----EEEEEECTTS
T ss_pred eeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE--------------cCCCCC----EEEEEEcCCC
Confidence 456899999999999998875 6999999999999999877 688754 5677999999
Q ss_pred --EEEEECCCcEEEEECCC
Q 000054 2527 --FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2527 --LaSGS~DGtIrIWDL~s 2543 (2548)
|+|||.||+|+|||+.+
T Consensus 377 ~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 377 ATVASAAADETLRLWRCFE 395 (420)
T ss_dssp SCEEEEETTTEEEEECCSC
T ss_pred CEEEEEecCCeEEEEECCC
Confidence 99999999999999865
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=285.04 Aligned_cols=248 Identities=19% Similarity=0.173 Sum_probs=192.1
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccC-CC----CCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLP-AA----NVPPPYALASISALQFDHYGHRFASAALDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~-gh----s~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVr 2296 (2548)
+.+++|+|||++|++++ |+++++||... ..+.... .+ ......|...|.+++|+|++ .+++|+.||+|+
T Consensus 33 v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~ 106 (344)
T 4gqb_B 33 LEAARYRSDGALLLGAS-SLSGRCWAGSL----WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVE 106 (344)
T ss_dssp EEEEEECTTSCEEEEEE-CCSSSCCCEEE----EEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEE
T ss_pred EEEEEECCCCCEEEEEe-CCceEEeecee----eeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEE
Confidence 68999999999998877 77888887321 1111000 00 00011134679999999985 688999999999
Q ss_pred EEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000054 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
+||+++++.... ......+|...|.+ |+|+|++|++|+ .|++|++||+.+ ++++..+.+|.+.|++++|
T Consensus 107 lWd~~~~~~~~~----~~~~~~~H~~~V~~v~~spdg~~l~sgs---~d~~i~iwd~~~--~~~~~~~~~h~~~V~~~~~ 177 (344)
T 4gqb_B 107 LWELDENETLIV----SKFCKYEHDDIVSTVSVLSSGTQAVSGS---KDICIKVWDLAQ--QVVLSSYRAHAAQVTCVAA 177 (344)
T ss_dssp EEEECTTSSCEE----EEEEEECCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTT--TEEEEEECCCSSCEEEEEE
T ss_pred EEeccCCCceeE----eeccccCCCCCEEEEEECCCCCEEEEEe---CCCeEEEEECCC--CcEEEEEcCcCCceEEEEe
Confidence 999998864332 12235689988875 899999999996 899999999986 6788999999999999999
Q ss_pred ccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000054 2375 FDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
++++ ..++++|+.||+|++||++ +++....+. ...|.
T Consensus 178 ~~~~------~~~l~s~s~D~~v~iwd~~---~~~~~~~~~----------------------------------~~~~~ 214 (344)
T 4gqb_B 178 SPHK------DSVFLSCSEDNRILLWDTR---CPKPASQIG----------------------------------CSAPG 214 (344)
T ss_dssp CSSC------TTEEEEEETTSCEEEEETT---SSSCEEECC--------------------------------------C
T ss_pred cCCC------CCceeeecccccccccccc---ccceeeeee----------------------------------cceee
Confidence 9984 5689999999999999954 556555440 03466
Q ss_pred CCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEE
Q 000054 2455 GSVTRISTVPN-TSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSC 2530 (2548)
Q Consensus 2455 ~~VtsLafSPd-G~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSG 2530 (2548)
..+.+++|+|+ +++|++|+.||+|++||+++++++.++ .+|.+. |++++|+|+| |+||
T Consensus 215 ~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~--------------~~h~~~----v~~v~fsp~g~~~lasg 276 (344)
T 4gqb_B 215 YLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS--------------AVHSQC----VTGLVFSPHSVPFLASL 276 (344)
T ss_dssp CCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE--------------ECCSSC----EEEEEECSSSSCCEEEE
T ss_pred ccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE--------------cCCCCC----EEEEEEccCCCeEEEEE
Confidence 68999999994 678999999999999999999988766 677754 5677999997 8899
Q ss_pred ECCCcEEEEECCCCc
Q 000054 2531 GGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2531 S~DGtIrIWDL~sg~ 2545 (2548)
+.||+|++||+.++.
T Consensus 277 s~D~~i~vwd~~~~~ 291 (344)
T 4gqb_B 277 SEDCSLAVLDSSLSE 291 (344)
T ss_dssp ETTSCEEEECTTCCE
T ss_pred eCCCeEEEEECCCCc
Confidence 999999999998874
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-26 Score=270.85 Aligned_cols=269 Identities=14% Similarity=0.179 Sum_probs=219.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+|+++++++++ ||.|++||+.+++....+.... ...|...|.+++|+|+++++++++.||.|++||++
T Consensus 54 v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~ 127 (337)
T 1gxr_A 54 VCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLD-----CLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp CCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEE-----CSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred eEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeeccc-----ccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence 58899999999999999 9999999998765433322211 12356899999999999999999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
+++... ...+..|...|.+ ++|+++++++++ .|+.|++||++. .+.+..+.+|.+.|.+++|+|+
T Consensus 128 ~~~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~v~~~d~~~--~~~~~~~~~~~~~i~~~~~~~~-- 194 (337)
T 1gxr_A 128 APTPRI------KAELTSSAPACYALAISPDSKVCFSCC---SDGNIAVWDLHN--QTLVRQFQGHTDGASCIDISND-- 194 (337)
T ss_dssp CC--EE------EEEEECSSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTT--
T ss_pred CCCcce------eeecccCCCceEEEEECCCCCEEEEEe---CCCcEEEEeCCC--CceeeeeecccCceEEEEECCC--
Confidence 765211 2235677777764 899999999986 899999999986 5778888899999999999998
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEcc-------
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIP------- 2450 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~------- 2450 (2548)
++.+++++.||.|++||+ .+++.+..+.. ......+.++|+++. ++..++.+++|++.
T Consensus 195 -----~~~l~~~~~dg~i~~~d~---~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~ 261 (337)
T 1gxr_A 195 -----GTKLWTGGLDNTVRSWDL---REGRQLQQHDF-----TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261 (337)
T ss_dssp -----SSEEEEEETTSEEEEEET---TTTEEEEEEEC-----SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE
T ss_pred -----CCEEEEEecCCcEEEEEC---CCCceEeeecC-----CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEE
Confidence 789999999999999995 45666555421 123456789999987 56678899999953
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EE
Q 000054 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FL 2528 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--La 2528 (2548)
..|...|.+++|+|++++|++++.||.|++||+.+++.+... .|. ..|.+++|+|++ |+
T Consensus 262 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~---------------~~~----~~v~~~~~s~~~~~l~ 322 (337)
T 1gxr_A 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS---------------KES----SSVLSCDISVDDKYIV 322 (337)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---------------ECS----SCEEEEEECTTSCEEE
T ss_pred cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe---------------cCC----CcEEEEEECCCCCEEE
Confidence 478999999999999999999999999999999999887544 233 336778999999 88
Q ss_pred EEECCCcEEEEEC
Q 000054 2529 SCGGDGSVKLIQL 2541 (2548)
Q Consensus 2529 SGS~DGtIrIWDL 2541 (2548)
+++.||.|++|++
T Consensus 323 ~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 323 TGSGDKKATVYEV 335 (337)
T ss_dssp EEETTSCEEEEEE
T ss_pred EecCCCeEEEEEE
Confidence 9999999999997
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-26 Score=291.82 Aligned_cols=259 Identities=22% Similarity=0.298 Sum_probs=216.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+|+++++++++.||+|++||..... +..+. .|...|.+++|+|+++++++|+.||.|++||..
T Consensus 306 v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-~~~~~----------~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~ 374 (577)
T 2ymu_A 306 VWGVAFSPDGQTIASASDDKTVKLWNRNGQH-LQTLT----------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 374 (577)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTSCE-EEEEC----------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-eEEEe----------CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC
Confidence 6899999999999999999999999976543 33332 245889999999999999999999999999964
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
++. ...+.+|...|.+ ++|+|+++++++ .|+.|++||.. ++.+..+.+|...|++++|+|+
T Consensus 375 -~~~--------~~~~~~~~~~v~~~~~s~dg~~l~~~~---~d~~v~~~~~~---~~~~~~~~~~~~~v~~~~~s~d-- 437 (577)
T 2ymu_A 375 -GQL--------LQTLTGHSSSVRGVAFSPDGQTIASAS---DDKTVKLWNRN---GQLLQTLTGHSSSVWGVAFSPD-- 437 (577)
T ss_dssp -CCE--------EEEEECCSSCEEEEEECTTSSCEEEEE---TTSEEEEECTT---CCEEEEEECCSSCEEEEEECTT--
T ss_pred -CCE--------EEEecCCCCCeEEEEECCCCCEEEEEe---CCCEEEEEeCC---CCEEEEecCCCCCeEEEEECCC--
Confidence 321 2346778888864 899999999986 89999999964 5678889999999999999998
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc-------c
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI-------P 2450 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi-------~ 2450 (2548)
+.+|++++.|+.|++||. +++.+..+... ......++|+|+|++ +++.|+.+++|+. +
T Consensus 438 -----~~~l~~~~~d~~v~~w~~----~~~~~~~~~~~----~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~ 504 (577)
T 2ymu_A 438 -----DQTIASASDDKTVKLWNR----NGQLLQTLTGH----SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 504 (577)
T ss_dssp -----SSEEEEEETTSEEEEEET----TSCEEEEEECC----SSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEE
T ss_pred -----CCEEEEEcCCCEEEEEEC----CCCEEEEEcCC----CCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEE
Confidence 689999999999999994 34555554221 223456889999998 5677889999983 4
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EE
Q 000054 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FL 2528 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--La 2528 (2548)
.+|...|++++|+|+|++|++|+.||.|++||. +++++.++ .+|.+. |++++|+||| |+
T Consensus 505 ~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~--------------~~h~~~----v~~~~fs~dg~~l~ 565 (577)
T 2ymu_A 505 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL--------------TGHSSS----VWGVAFSPDGQTIA 565 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE--------------ECCSSC----EEEEEECTTSSCEE
T ss_pred eCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEE--------------cCCCCC----EEEEEEcCCCCEEE
Confidence 579999999999999999999999999999996 67887766 678754 5677999999 99
Q ss_pred EEECCCcEEEEE
Q 000054 2529 SCGGDGSVKLIQ 2540 (2548)
Q Consensus 2529 SGS~DGtIrIWD 2540 (2548)
|+|.||+|++||
T Consensus 566 s~~~D~~i~~Wd 577 (577)
T 2ymu_A 566 SASSDKTVKLWN 577 (577)
T ss_dssp EEETTSCEEEEC
T ss_pred EEeCCCEEEEeC
Confidence 999999999997
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=290.28 Aligned_cols=280 Identities=14% Similarity=0.139 Sum_probs=203.5
Q ss_pred EEEEEEcC-CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSP-dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWD 2299 (2548)
|.|++||| ++.+||+|+.||+|+|||+.+++....+. ..+|.+.|++|+|+| ++++|++|+.||+|++||
T Consensus 122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~--------~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIK--------GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEEC--------CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEE--------ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 79999999 46799999999999999999876555542 234779999999998 689999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
++++..... .....+...+ ..+++++++|++|+ .||.|++||++ ++.+..+.+|.+.|++++|+|.
T Consensus 194 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~g~---~dg~i~~wd~~---~~~~~~~~~h~~~v~~v~~~p~ 261 (435)
T 4e54_B 194 FKGNILRVF------ASSDTINIWFCSLDVSASSRMVVTGD---NVGNVILLNMD---GKELWNLRMHKKKVTHVALNPC 261 (435)
T ss_dssp TTSCEEEEE------ECCSSCSCCCCCEEEETTTTEEEEEC---SSSBEEEEESS---SCBCCCSBCCSSCEEEEEECTT
T ss_pred ccCCceeEE------eccCCCCccEEEEEECCCCCEEEEEe---CCCcEeeeccC---cceeEEEecccceEEeeeecCC
Confidence 986532111 1112222223 24889999999986 89999999986 4567788899999999999998
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEccc----
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIPK---- 2451 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~~---- 2451 (2548)
+ ..++++|+.||+|++||++.......+... ..+ ......++|+|+|.+ +++.|+.+++|++..
T Consensus 262 ~------~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~---~~h-~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 262 C------DWFLATASVDQTVKIWDLRQVRGKASFLYS---LPH-RHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCP 331 (435)
T ss_dssp C------SSEEEEEETTSBCCEEETTTCCSSSCCSBC---CBC-SSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSE
T ss_pred C------ceEEEEecCcceeeEEecccccccceEEEe---eec-cccccceeECCCCCeeEEEcCCCEEEEEECCCCccc
Confidence 4 568999999999999997642222221111 111 223456789999987 677889999999643
Q ss_pred ----CCCC------CEEEEEEeCCCCEEEEEeC------------CCcEEEEECCCCcEEEEecccccccccccCcccCC
Q 000054 2452 ----AHLG------SVTRISTVPNTSLFLTGSK------------DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGF 2509 (2548)
Q Consensus 2452 ----gH~~------~VtsLafSPdG~~LaSGS~------------DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH 2509 (2548)
.|.. .+....|+|++.++++++. ++.|++||..+++.+.++ ..+|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l-------------~~~~ 398 (435)
T 4e54_B 332 LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL-------------YDPE 398 (435)
T ss_dssp EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE-------------CCSS
T ss_pred eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE-------------eCCC
Confidence 2221 2345678888877777642 357999999999998877 2456
Q ss_pred CCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCCccc
Q 000054 2510 GGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDYQHR 2547 (2548)
Q Consensus 2510 ~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg~lr 2547 (2548)
...|.+. .+|+|+| +++++.|++|+||+++++..|
T Consensus 399 ~~~v~s~---~~fspdg~~lasg~d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 399 SSGISSL---NEFNPMGDTLASAMGYHILIWSQQEARTR 434 (435)
T ss_dssp CCCCCCE---EEECTTSSCEEEECSSEEEECCCC-----
T ss_pred CCcEEEE---EEECCCCCEEEEEcCCcEEEEECCcCeee
Confidence 6544332 2799999 443445899999999998654
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-25 Score=268.69 Aligned_cols=270 Identities=13% Similarity=0.187 Sum_probs=221.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|.+++|+|++++|++|+.||.|++||+.+++.+..+.. |.+.|++++|+|++++|++++.||.|++||+.
T Consensus 35 v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~----------h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 35 LTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDG----------HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS 104 (369)
T ss_dssp EEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECC----------CSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred EEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhh----------cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 79999999999999999999999999999988887743 55899999999999999999999999999999
Q ss_pred CCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCC-----CeEEEEECCCCCC---------Ccceeeecc
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNG-----INVVVWDTLAPPT---------SSRASITCH 2365 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~D-----GtVrIWDl~t~~~---------k~v~sl~gH 2365 (2548)
+++.... +. +...+. .++|+++.+++++ .+ +.|++||+..... ..+..+..|
T Consensus 105 ~~~~~~~--------~~-~~~~v~~~~~~~~~~~l~~~~---~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
T 3zwl_B 105 NGQCVAT--------WK-SPVPVKRVEFSPCGNYFLAIL---DNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH 172 (369)
T ss_dssp TCCEEEE--------EE-CSSCEEEEEECTTSSEEEEEE---CCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred CCcEEEE--------ee-cCCCeEEEEEccCCCEEEEec---CCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence 8764332 22 455555 4899999999986 67 9999999875321 244556667
Q ss_pred CC--CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCcccc-CceeeeecCCCCCCCccccccccCCCCCC--ccCC
Q 000054 2366 EG--GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIAT-GKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPG 2440 (2548)
Q Consensus 2366 s~--~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~T-Gk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~ 2440 (2548)
.+ .+.+++|+|+ +..+++|+.||.|++||++ + ++.+..+.. .......+.++|++.+ +++.
T Consensus 173 ~~~~~~~~~~~~~~-------~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~ 238 (369)
T 3zwl_B 173 EGLDAATVAGWSTK-------GKYIIAGHKDGKISKYDVS---NNYEYVDSIDL----HEKSISDMQFSPDLTYFITSSR 238 (369)
T ss_dssp TTCCCEEEEEECGG-------GCEEEEEETTSEEEEEETT---TTTEEEEEEEC----CSSCEEEEEECTTSSEEEEEET
T ss_pred cCccceeEEEEcCC-------CCEEEEEcCCCEEEEEECC---CCcEeEEEEec----CCCceeEEEECCCCCEEEEecC
Confidence 76 9999999998 7899999999999999954 3 455544421 1223556789999987 5677
Q ss_pred CCCceEEEccc-------CCCCCEEEEEEeCCCCEEEEEeCCC--------------cEEEEECCCCcEEEEeccccccc
Q 000054 2441 DQNGMLWYIPK-------AHLGSVTRISTVPNTSLFLTGSKDG--------------DVKLWDAKAAQLVYHWSKLHERH 2499 (2548)
Q Consensus 2441 D~sv~Iwdi~~-------gH~~~VtsLafSPdG~~LaSGS~DG--------------tIrIWDl~Tgell~tL~~~Hs~h 2499 (2548)
++.+++|++.. .+...+.+++|+|+++++++++.++ .+++||..+++.+..+
T Consensus 239 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~------- 311 (369)
T 3zwl_B 239 DTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV------- 311 (369)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE-------
T ss_pred CceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe-------
Confidence 88999999643 2678899999999999999999998 8999999999998876
Q ss_pred ccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2500 TFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2500 sfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.+|.+ .|.+++|+|++ |++|+.||+|++|+++++.
T Consensus 312 -------~~~~~----~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 312 -------QGHFG----PLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp -------ECCSS----CEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred -------ecccC----cEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 56664 35777999999 8999999999999998653
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=269.99 Aligned_cols=231 Identities=16% Similarity=0.217 Sum_probs=192.3
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEE
Q 000054 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVV 2347 (2548)
Q Consensus 2270 H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVr 2347 (2548)
|.+.|++++|+|+++++++|+.||+|++||++++... ..+..|...|.+ |+++++++++|+ .|++|+
T Consensus 12 h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~s~s---~d~~i~ 80 (304)
T 2ynn_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEV--------RSIQVTETPVRAGKFIARKNWIIVGS---DDFRIR 80 (304)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE--------EEEECCSSCEEEEEEEGGGTEEEEEE---TTSEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcee--------EEeeccCCcEEEEEEeCCCCEEEEEC---CCCEEE
Confidence 5689999999999999999999999999999887533 236677777764 899999999996 899999
Q ss_pred EEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCcee-eeecCCCCCCCcccc
Q 000054 2348 VWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTK-KHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2348 IWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l-~tl~~~~~~s~~~~~ 2426 (2548)
+||+.+ ++.+..+.+|.+.|++++|+|+ +++|++|+.||+|++||++ ++... ..+. .+ .....
T Consensus 81 vwd~~~--~~~~~~~~~h~~~v~~~~~~~~-------~~~l~sgs~D~~v~lWd~~---~~~~~~~~~~---~h-~~~v~ 144 (304)
T 2ynn_A 81 VFNYNT--GEKVVDFEAHPDYIRSIAVHPT-------KPYVLSGSDDLTVKLWNWE---NNWALEQTFE---GH-EHFVM 144 (304)
T ss_dssp EEETTT--CCEEEEEECCSSCEEEEEECSS-------SSEEEEEETTSCEEEEEGG---GTTEEEEEEC---CC-CSCEE
T ss_pred EEECCC--CcEEEEEeCCCCcEEEEEEcCC-------CCEEEEECCCCeEEEEECC---CCcchhhhhc---cc-CCcEE
Confidence 999986 6788899999999999999998 7899999999999999954 44333 3331 11 22345
Q ss_pred ccccCCC-CCC--ccCCCCCceEEEcc---------cCCCCCEEEEEEeC--CCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2427 AHADAQT-GSG--SKPGDQNGMLWYIP---------KAHLGSVTRISTVP--NTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2427 ~vafSpd-Gk~--v~s~D~sv~Iwdi~---------~gH~~~VtsLafSP--dG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
.++|+|+ +.. .++.|+.+++|++. .+|...|..+.|+| ++.+|++|+.||+|++||+++++++.++
T Consensus 145 ~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~ 224 (304)
T 2ynn_A 145 CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224 (304)
T ss_dssp EEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceee
Confidence 6788884 554 67889999999963 35678899999987 6789999999999999999999998877
Q ss_pred cccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2493 SKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2493 ~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.+|.+. |..++|+|++ |+||+.||+|++||+.++.
T Consensus 225 --------------~~h~~~----v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~ 261 (304)
T 2ynn_A 225 --------------EGHMSN----VSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261 (304)
T ss_dssp --------------ECCSSC----EEEEEECSSSSEEEEEETTSCEEEEETTTCC
T ss_pred --------------CCCCCC----EEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 677754 4667999999 8999999999999998764
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-25 Score=260.30 Aligned_cols=267 Identities=20% Similarity=0.209 Sum_probs=194.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCcee-EEEeccCCCCCCCCCCCCCeEEEEEcc--CCCEEEEEeCCCcEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKAT-ATYGVLPAANVPPPYALASISALQFDH--YGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l-~t~~~l~ghs~~~~~H~~~VtsVaFSP--dG~~LaSGS~DGtVrVW 2298 (2548)
|.+++|+|++++|++|+.||.|++||+.++... .....+. .|.+.|++++|+| ++++|++|+.||+|++|
T Consensus 14 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw 86 (351)
T 3f3f_A 14 VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-------AHDSSIVAIDWASPEYGRIIASASYDKTVKLW 86 (351)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE-------CCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred eeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceec-------cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence 799999999999999999999999999976422 1111122 2558999999999 69999999999999999
Q ss_pred EcCCCccccc-ccCccceeccCCcccEEE--EcCC--CCEEEEEeccCCCCeEEEEECCCCCCCcceeee----------
Q 000054 2299 QLEVGGRSNV-RPMESCLCFSSHAMDVSY--ITSS--GSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT---------- 2363 (2548)
Q Consensus 2299 Dl~tgk~i~i-~p~~s~~t~~gH~~~V~a--fSpd--GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~---------- 2363 (2548)
|++++..... ........+.+|...|.+ |+|+ ++++++++ .||.|++||++.. +.+..+.
T Consensus 87 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~dg~v~iwd~~~~--~~~~~~~~~~~~~~~~~ 161 (351)
T 3f3f_A 87 EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG---NDGILRLYDALEP--SDLRSWTLTSEMKVLSI 161 (351)
T ss_dssp EECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE---TTCEEEEEECSST--TCTTCCEEEEEEESCSC
T ss_pred ecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec---CCCcEEEecCCCh--HHhcccccccccccccc
Confidence 9987642110 011223456788888874 8898 99999987 8999999999863 3332222
Q ss_pred ---ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCC
Q 000054 2364 ---CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPG 2440 (2548)
Q Consensus 2364 ---gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~ 2440 (2548)
.|...+.++.|+|+. ..+..+++++.|+.+.+|+.+ .++..
T Consensus 162 ~~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~~~~---~~~~~----------------------------- 205 (351)
T 3f3f_A 162 PPANHLQSDFCLSWCPSR----FSPEKLAVSALEQAIIYQRGK---DGKLH----------------------------- 205 (351)
T ss_dssp CCSSCSCCCEEEEECCCS----SSCCEEEEEETTEEEEEEECT---TSCEE-----------------------------
T ss_pred ccCCcccceeEEEeccCC----CCCcEEEEecCCCcEEEEccC---CCcee-----------------------------
Confidence 688899999999972 126799999999999888732 23321
Q ss_pred CCCceEEEcccCCCCCEEEEEEeCCC----CEEEEEeCCCcEEEEECCCCcEEEEecccccc------------------
Q 000054 2441 DQNGMLWYIPKAHLGSVTRISTVPNT----SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHER------------------ 2498 (2548)
Q Consensus 2441 D~sv~Iwdi~~gH~~~VtsLafSPdG----~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~------------------ 2498 (2548)
....+.+|...|++++|+|++ ++|++|+.||.|++||++++............
T Consensus 206 -----~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (351)
T 3f3f_A 206 -----VAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRS 280 (351)
T ss_dssp -----EEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------
T ss_pred -----eeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccccccccc
Confidence 111236799999999999998 89999999999999999875322111000000
Q ss_pred --------------cccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2499 --------------HTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2499 --------------hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
..-....+.+|.+ .|++++|+|++ |++|+.||+|++|++.++.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~h~~----~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 281 DSNTEEKAELQSNLQVELLSEHDDHNG----EVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp ----------CCSEEEEEEEEECTTSS----CEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred ccccceeeeecccccccEEEEEecccc----cEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 0000112467764 45778999999 9999999999999998763
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=286.38 Aligned_cols=282 Identities=10% Similarity=0.068 Sum_probs=200.1
Q ss_pred EEEEEEcCCCCEEEEEECCC-------eEEEEEcCCCcee-----EEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNT-------HIYLWEFGKDKAT-----ATYGVLPAANVPPPYALASISALQFDHYGHRFASA 2289 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DG-------sVrLWDl~tg~~l-----~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG 2289 (2548)
|.+++|+|+|++|++|+.|. .|++|++..+... ...... ....|...|.+++++ ++.+++|
T Consensus 17 V~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~-----~l~~~~~~v~s~~~~--~~~~~~g 89 (365)
T 4h5i_A 17 AYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEF-----ALEDNDDSPTAIDAS--KGIILVG 89 (365)
T ss_dssp EEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEE-----ECCTTSCCCCEEEEE--TTEEEEE
T ss_pred EEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEE-----EccCCCCceEEEEeC--CCEEEEE
Confidence 79999999999999997644 5999999765321 111110 122355788888765 5566665
Q ss_pred -----------eCCCcEEEEEcCCCcccccccCccc--eeccCCcc--cEEEEcCCCCEEEEEeccCCCCeEEEEECCCC
Q 000054 2290 -----------ALDGTVCTWQLEVGGRSNVRPMESC--LCFSSHAM--DVSYITSSGSVIAAAGHSSNGINVVVWDTLAP 2354 (2548)
Q Consensus 2290 -----------S~DGtVrVWDl~tgk~i~i~p~~s~--~t~~gH~~--~V~afSpdGslLATgG~SS~DGtVrIWDl~t~ 2354 (2548)
+.|+++++|++....... ...... .....+.. .+.+|+|||+++++++. +.|++|+|||+.+
T Consensus 90 ~~~~~~~l~s~~~d~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~-~~d~~i~iwd~~~- 166 (365)
T 4h5i_A 90 CNENSTKITQGKGNKHLRKFKYDKVNDQL-EFLTSVDFDASTNADDYTKLVYISREGTVAAIASS-KVPAIMRIIDPSD- 166 (365)
T ss_dssp CCCCHHHHHHTSCCCCEEEEEEETTTTEE-EEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEES-CSSCEEEEEETTT-
T ss_pred ECCCccEEEEecCCCcEEEEEecCCCceE-EEeeeeceeecCCcccCEEEEEEcCCCCEEEEEEC-CCCCEEEEeECCC-
Confidence 457789999987653211 100001 11222333 34569999999887653 3799999999986
Q ss_pred CCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCC
Q 000054 2355 PTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTG 2434 (2548)
Q Consensus 2355 ~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdG 2434 (2548)
.+.+..+. |.+.|.+++|+|+ +.++++++.| .+++|+ ..+++.+.... ..........+.|+|+|
T Consensus 167 -~~~~~~~~-~~~~V~~v~fspd-------g~~l~s~s~~-~~~~~~---~~~~~~~~~~~--~~~~~~~v~~v~fspdg 231 (365)
T 4h5i_A 167 -LTEKFEIE-TRGEVKDLHFSTD-------GKVVAYITGS-SLEVIS---TVTGSCIARKT--DFDKNWSLSKINFIADD 231 (365)
T ss_dssp -TEEEEEEE-CSSCCCEEEECTT-------SSEEEEECSS-CEEEEE---TTTCCEEEEEC--CCCTTEEEEEEEEEETT
T ss_pred -CcEEEEeC-CCCceEEEEEccC-------CceEEeccce-eEEEEE---eccCcceeeee--cCCCCCCEEEEEEcCCC
Confidence 56666664 7889999999998 7899998855 566666 34455544321 11122335678899999
Q ss_pred CC--ccCCCC----CceEEEc------------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccc
Q 000054 2435 SG--SKPGDQ----NGMLWYI------------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLH 2496 (2548)
Q Consensus 2435 k~--v~s~D~----sv~Iwdi------------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~H 2496 (2548)
.. +++.++ .+++|++ ..+|...|++++|+|+|++||+|+.||+|+|||+++++++.++
T Consensus 232 ~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~---- 307 (365)
T 4h5i_A 232 TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF---- 307 (365)
T ss_dssp EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE----
T ss_pred CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe----
Confidence 87 333333 3455653 3478899999999999999999999999999999999999877
Q ss_pred cccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2497 ERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2497 s~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+.+|.+. |++++|+||| |||||.|++||||+++.+.
T Consensus 308 ---------~~gH~~~----V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 308 ---------KQAHSFA----ITEVTISPDSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp ---------TTSSSSC----EEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred ---------cCcccCC----EEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 4788754 5778999999 9999999999999998653
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-25 Score=266.56 Aligned_cols=285 Identities=15% Similarity=0.205 Sum_probs=210.5
Q ss_pred EEEEEEcCCCCEEE-EEEC---CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC---CCEEEEEeCCCc
Q 000054 2222 TRAFSSHPLRPFFL-VGSS---NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY---GHRFASAALDGT 2294 (2548)
Q Consensus 2222 V~~VsfSPdG~~LA-SGS~---DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd---G~~LaSGS~DGt 2294 (2548)
+.+++|+|+++.++ +|+. ||.|++||+.+++....... .|.+.|++++|+|+ +++|++|+.||.
T Consensus 21 v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 21 VFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREI---------EKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEE---------EESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred eEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeee---------cccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 79999999997555 5665 99999999998876544321 25589999999998 799999999999
Q ss_pred EEEEEcCCCcccccccCccceeccCCcccEEEE--------cCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccC
Q 000054 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYI--------TSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE 2366 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~af--------SpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs 2366 (2548)
|++||+.+++. ....+.+|...|.++ +++++++++++ .|+.|++||++.. ...+..+..|.
T Consensus 92 i~iwd~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~---~d~~i~vwd~~~~-~~~~~~~~~~~ 160 (357)
T 3i2n_A 92 LHIWNLEAPEM-------PVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGS---RDGTVKVWDPRQK-DDPVANMEPVQ 160 (357)
T ss_dssp EEEECTTSCSS-------CSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEE---TTSCEEEECTTSC-SSCSEEECCCT
T ss_pred EEEEeCCCCCc-------cEEEEEecccceEEEeeccccccCCCccEEEEEe---CCCeEEEEeCCCC-CCcceeccccC
Confidence 99999987751 123467888877753 78999999986 8999999999863 23667776665
Q ss_pred C----CeEEEEE----ccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCC---CCC
Q 000054 2367 G----GARSISV----FDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQ---TGS 2435 (2548)
Q Consensus 2367 ~----~VtSLaf----sP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSp---dGk 2435 (2548)
+ .++++.| +|+ +.++++|+.||.|++||++ +++...... .......+.++| ++.
T Consensus 161 ~~~~~~v~~~~~~~~~~~~-------~~~l~~~~~d~~i~i~d~~---~~~~~~~~~-----~~~~v~~~~~~~~~~~~~ 225 (357)
T 3i2n_A 161 GENKRDCWTVAFGNAYNQE-------ERVVCAGYDNGDIKLFDLR---NMALRWETN-----IKNGVCSLEFDRKDISMN 225 (357)
T ss_dssp TSCCCCEEEEEEECCCC-C-------CCEEEEEETTSEEEEEETT---TTEEEEEEE-----CSSCEEEEEESCSSSSCC
T ss_pred CCCCCceEEEEEEeccCCC-------CCEEEEEccCCeEEEEECc---cCceeeecC-----CCCceEEEEcCCCCCCCC
Confidence 5 8999994 555 7899999999999999954 455433321 112356678888 777
Q ss_pred C--ccCCCCCceEEEcc--------c-----CCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCcEEEEecccc---
Q 000054 2436 G--SKPGDQNGMLWYIP--------K-----AHLGSVTRISTVPNTS-LFLTGSKDGDVKLWDAKAAQLVYHWSKLH--- 2496 (2548)
Q Consensus 2436 ~--v~s~D~sv~Iwdi~--------~-----gH~~~VtsLafSPdG~-~LaSGS~DGtIrIWDl~Tgell~tL~~~H--- 2496 (2548)
. +++.++.+++|++. . +|...|++++|+|+++ +|++|+.||.|++||++++..........
T Consensus 226 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~ 305 (357)
T 3i2n_A 226 KLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEM 305 (357)
T ss_dssp EEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCC
T ss_pred EEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcc
Confidence 6 67778899999842 2 7999999999999998 89999999999999998654322110000
Q ss_pred --cccccccCcccCCCCceeecEEEEEEcCCe--EE-EEECCCcEEEEECCCCc
Q 000054 2497 --ERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FL-SCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2497 --s~hsfl~~tl~GH~~~V~a~VtsLafSPdG--La-SGS~DGtIrIWDL~sg~ 2545 (2548)
.+.......+.+|.+ .|++++|+|+| |+ +|+.||.|++||+.+..
T Consensus 306 ~~~~~~~~~~~~~~~~~----~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 306 GVAGSVSLLQNVTLSTQ----PISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp CCCCEEEEEEEEECCSS----CEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred ccccccceeeccccCCC----CeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 000000112366764 45778999999 77 89999999999998753
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-25 Score=273.34 Aligned_cols=271 Identities=13% Similarity=0.121 Sum_probs=210.1
Q ss_pred EEEEEEcCCC-CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLR-PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG-~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWD 2299 (2548)
+.+++|+|++ ++|++|+.||.|+|||+.+++....+. ..+|.+.|.+++|+| ++++|++|+.||.|++||
T Consensus 76 v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 147 (383)
T 3ei3_B 76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ--------GMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD 147 (383)
T ss_dssp EEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEEC--------CCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred EEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeee--------cCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence 7999999999 999999999999999999888776653 224669999999999 789999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
+++.. .. ......+|...|.+ ++|+++++++++ .|+.|++||++ .+.+..+.+|.+.|.+++|+|+
T Consensus 148 ~~~~~-~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~i~d~~---~~~~~~~~~h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 148 FSGSV-IQ-----VFAKTDSWDYWYCCVDVSVSRQMLATGD---STGRLLLLGLD---GHEIFKEKLHKAKVTHAEFNPR 215 (383)
T ss_dssp TTSCE-EE-----EEECCCCSSCCEEEEEEETTTTEEEEEE---TTSEEEEEETT---SCEEEEEECSSSCEEEEEECSS
T ss_pred CCCCc-eE-----EEeccCCCCCCeEEEEECCCCCEEEEEC---CCCCEEEEECC---CCEEEEeccCCCcEEEEEECCC
Confidence 98532 11 11223444566654 899999999987 89999999994 5688889999999999999999
Q ss_pred CCCCCCCCC-EEEEEeCCCcEEEEeCCcccc-CceeeeecCCCCCCCccccccccCC-CCCC--ccCCCCCceEEEcccC
Q 000054 2378 DLGSGSVSP-LIVTGGKGGDVGIHDFRYIAT-GKTKKHKHSDRGGSSINTCAHADAQ-TGSG--SKPGDQNGMLWYIPKA 2452 (2548)
Q Consensus 2378 dlg~gs~g~-lLVSGS~DGtVrLWDLR~l~T-Gk~l~tl~~~~~~s~~~~~~vafSp-dGk~--v~s~D~sv~Iwdi~~g 2452 (2548)
++ ++++|+.||.|++||++.... +..+..+. .......+.|+| +|.. +++.|+.+++|++..+
T Consensus 216 -------~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~ 283 (383)
T 3ei3_B 216 -------CDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-----HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW 283 (383)
T ss_dssp -------CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-----CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT
T ss_pred -------CCCEEEEEeCCCEEEEEeCCCCCcccceEEEec-----CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC
Confidence 55 999999999999999764222 44444431 123456788999 8887 6677889999996321
Q ss_pred --------C-------C----------CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCccc
Q 000054 2453 --------H-------L----------GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSR 2507 (2548)
Q Consensus 2453 --------H-------~----------~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~ 2507 (2548)
| . +.+..++|+|++++ +|+.||.|++||+.+++++.++.. .
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~------------~ 349 (383)
T 3ei3_B 284 SKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD------------P 349 (383)
T ss_dssp TSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB------------T
T ss_pred ccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecC------------C
Confidence 2 2 23444666777766 778999999999999999987721 1
Q ss_pred CCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCC
Q 000054 2508 GFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2508 GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~s 2543 (2548)
+|.+ .+..++|+|+| |++|+ ||+|++||+++
T Consensus 350 ~~~~----~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 350 NAAG----IISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TBCS----CCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CCCc----eEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 1333 24556999999 77776 99999999975
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.7e-26 Score=279.81 Aligned_cols=282 Identities=15% Similarity=0.262 Sum_probs=221.2
Q ss_pred EEEEEEcCCCC-EEEEE----------ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe
Q 000054 2222 TRAFSSHPLRP-FFLVG----------SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA 2290 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASG----------S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS 2290 (2548)
+.+++|+|+++ ++++| +.|+.|+|||+.++.....+ ....|...|++++|+|++++|++|+
T Consensus 15 v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~--------~~~~~~~~v~~~~~s~~~~~l~~~~ 86 (416)
T 2pm9_A 15 TATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPI--------ASLQVDSKFNDLDWSHNNKIIAGAL 86 (416)
T ss_dssp SCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCS--------CCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred cceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEE--------EEEecCCceEEEEECCCCCeEEEEc
Confidence 57889999987 99999 89999999999987643221 1223568999999999999999999
Q ss_pred CCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCC-CCEEEEEeccCCCCeEEEEECCCCCC-----C--cce
Q 000054 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSS-GSVIAAAGHSSNGINVVVWDTLAPPT-----S--SRA 2360 (2548)
Q Consensus 2291 ~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpd-GslLATgG~SS~DGtVrIWDl~t~~~-----k--~v~ 2360 (2548)
.||.|++||+.+.... ......+.+|...|.+ |+|+ ++++++++ .|+.|++||+..... . ...
T Consensus 87 ~dg~v~vw~~~~~~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~---~dg~v~iwd~~~~~~~~~~~~~~~~~ 159 (416)
T 2pm9_A 87 DNGSLELYSTNEANNA----INSMARFSNHSSSVKTVKFNAKQDNVLASGG---NNGEIFIWDMNKCTESPSNYTPLTPG 159 (416)
T ss_dssp SSSCEEEECCSSTTSC----CCEEEECCCSSSCCCEEEECSSSTTBEEEEC---SSSCEEBCBTTTTSSCTTTCCCBCCC
T ss_pred cCCeEEEeeccccccc----ccchhhccCCccceEEEEEcCCCCCEEEEEc---CCCeEEEEECCCCccccccccccccc
Confidence 9999999999863110 0123446778887764 8898 88999986 899999999986421 1 123
Q ss_pred eeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCC--CCccccccccCCCCC-C-
Q 000054 2361 SITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGG--SSINTCAHADAQTGS-G- 2436 (2548)
Q Consensus 2361 sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~--s~~~~~~vafSpdGk-~- 2436 (2548)
...+|...|.+++|+|++ +.++++|+.||.|++||+ .+++.+..+...... .......+.++|++. .
T Consensus 160 ~~~~~~~~v~~~~~~~~~------~~~l~~~~~dg~v~iwd~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (416)
T 2pm9_A 160 QSMSSVDEVISLAWNQSL------AHVFASAGSSNFASIWDL---KAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRV 230 (416)
T ss_dssp CSCCSSCCCCEEEECSSC------TTEEEEESSSSCEEEEET---TTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEE
T ss_pred cccCCCCCeeEEEeCCCC------CcEEEEEcCCCCEEEEEC---CCCCcceEEeccccccccCCceEEEEECCCCCCEE
Confidence 346799999999999984 679999999999999994 456666665222110 034456788999974 3
Q ss_pred -ccCCCC---CceEEEcc---------c-CCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccccccccc
Q 000054 2437 -SKPGDQ---NGMLWYIP---------K-AHLGSVTRISTVP-NTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTF 2501 (2548)
Q Consensus 2437 -v~s~D~---sv~Iwdi~---------~-gH~~~VtsLafSP-dG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsf 2501 (2548)
++..++ .+++|++. . +|...|++++|+| ++++|++|+.||.|++||+++++.+.++
T Consensus 231 ~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~--------- 301 (416)
T 2pm9_A 231 ATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQF--------- 301 (416)
T ss_dssp EEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEE---------
T ss_pred EEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceee---------
Confidence 556666 89999953 3 6899999999999 9999999999999999999999998877
Q ss_pred ccCcccCCCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCCCc
Q 000054 2502 LQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2502 l~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.+|.+.| .+++|+|++ +++++.||+|++|++.++.
T Consensus 302 -----~~~~~~v----~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 302 -----PARGNWC----FKTKFAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp -----ECSSSCC----CCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred -----cCCCCce----EEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 5666544 566999987 8899999999999998764
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=277.77 Aligned_cols=252 Identities=17% Similarity=0.199 Sum_probs=190.0
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCce--eEEEeccCCCCCCCCCCCCCeEEEEEcc--CCCEEEEEeCCCcEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKA--TATYGVLPAANVPPPYALASISALQFDH--YGHRFASAALDGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~--l~t~~~l~ghs~~~~~H~~~VtsVaFSP--dG~~LaSGS~DGtVrV 2297 (2548)
|.+++|+|+|++||+|+.|++|+|||+.++.. +..+. +|.+.|++++|++ ++++|++|+.||+|++
T Consensus 16 V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~----------gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 16 IHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLR----------GHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp EEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEE----------CCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred EEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEc----------CCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 79999999999999999999999999988753 33432 3568999999986 4899999999999999
Q ss_pred EEcCCCcccccccCccceeccCCcccEE--EEcCC--CCEEEEEeccCCCCeEEEEECCCCCC-CcceeeeccCCCeEEE
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSS--GSVIAAAGHSSNGINVVVWDTLAPPT-SSRASITCHEGGARSI 2372 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpd--GslLATgG~SS~DGtVrIWDl~t~~~-k~v~sl~gHs~~VtSL 2372 (2548)
||++++... ....+.+|...|. +|+|+ +.++++++ .|+.|++||++.... .....+.+|...|.++
T Consensus 86 Wd~~~~~~~------~~~~~~~h~~~V~~v~~~p~~~g~~lasgs---~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~ 156 (316)
T 3bg1_A 86 WREENGTWE------KSHEHAGHDSSVNSVCWAPHDYGLILACGS---SDGAISLLTYTGEGQWEVKKINNAHTIGCNAV 156 (316)
T ss_dssp ECCSSSCCC------EEEEECCCSSCCCEEEECCTTTCSCEEEEC---SSSCEEEEEECSSSCEEECCBTTSSSSCBCCC
T ss_pred EECCCCcce------EEEEccCCCCceEEEEECCCCCCcEEEEEc---CCCCEEEEecCCCCCcceeeeeccccCCcceE
Confidence 999876321 1234677887776 48887 78999986 899999999975311 1245667899999999
Q ss_pred EEccCCCCC----------CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCC
Q 000054 2373 SVFDNDLGS----------GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQ 2442 (2548)
Q Consensus 2373 afsP~dlg~----------gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~ 2442 (2548)
+|+|+.... ...+.+|++|+.||+|++||++.....+.+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~----------------------------- 207 (316)
T 3bg1_A 157 SWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK----------------------------- 207 (316)
T ss_dssp EECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEEC-----------------------------
T ss_pred EEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeee-----------------------------
Confidence 999872100 00136899999999999999531000012222
Q ss_pred CceEEEcccCCCCCEEEEEEeCCC----CEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEE
Q 000054 2443 NGMLWYIPKAHLGSVTRISTVPNT----SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVT 2518 (2548)
Q Consensus 2443 sv~Iwdi~~gH~~~VtsLafSPdG----~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vt 2518 (2548)
+.+|.+.|++++|+|++ .+|++|+.||+|++||+.+...-. . . ...+.+|.+ .|+
T Consensus 208 -------l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~-~----~-----~~~~~~~~~----~v~ 266 (316)
T 3bg1_A 208 -------LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNT-W----S-----PKLLHKFND----VVW 266 (316)
T ss_dssp -------CBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCC-C----B-----CCEEEECSS----CEE
T ss_pred -------cccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccc-h----h-----hhhhhcCCC----cEE
Confidence 37899999999999986 899999999999999997631100 0 0 001234543 467
Q ss_pred EEEEcCCe--EEEEECCCcEEEEECC
Q 000054 2519 DIQVVSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2519 sLafSPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
+++|+|+| |++|+.||+|++|+..
T Consensus 267 ~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 267 HVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 78999999 9999999999999976
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-25 Score=283.94 Aligned_cols=263 Identities=21% Similarity=0.283 Sum_probs=218.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+|+++++++++.|+.|++||.. ++....+. +|.+.|++++|+|+++.+++++.||+|++||..
T Consensus 265 v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~----------~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~ 333 (577)
T 2ymu_A 265 VNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLT----------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN 333 (577)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEEC----------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEe----------cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 6889999999999999999999999964 44454442 255899999999999999999999999999986
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
... ...+.+|...+.+ ++|+++.+++++ .|+.|++||.. ++.+..+.+|...|++++|+|+
T Consensus 334 ~~~---------~~~~~~~~~~v~~~~~s~~g~~l~~~~---~dg~v~~~~~~---~~~~~~~~~~~~~v~~~~~s~d-- 396 (577)
T 2ymu_A 334 GQH---------LQTLTGHSSSVWGVAFSPDGQTIASAS---DDKTVKLWNRN---GQLLQTLTGHSSSVRGVAFSPD-- 396 (577)
T ss_dssp SCE---------EEEECCCSSCEEEEEECTTSSEEEEEE---TTSEEEEEETT---CCEEEEEECCSSCEEEEEECTT--
T ss_pred CCe---------eEEEeCCCCCEEEEEECCCCCEEEEEe---CCCEEEEEcCC---CCEEEEecCCCCCeEEEEECCC--
Confidence 542 1235678777764 899999999986 89999999964 5678889999999999999998
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc-------c
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI-------P 2450 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi-------~ 2450 (2548)
+++|++|+.|+.|++||. +++.+..+... ......++++|++++ +++.|+.+++|+. +
T Consensus 397 -----g~~l~~~~~d~~v~~~~~----~~~~~~~~~~~----~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~ 463 (577)
T 2ymu_A 397 -----GQTIASASDDKTVKLWNR----NGQLLQTLTGH----SSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTL 463 (577)
T ss_dssp -----SSCEEEEETTSEEEEECT----TCCEEEEEECC----SSCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEE
T ss_pred -----CCEEEEEeCCCEEEEEeC----CCCEEEEecCC----CCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEE
Confidence 789999999999999994 34555554221 123456789999988 5677888999984 3
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EE
Q 000054 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FL 2528 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--La 2528 (2548)
.+|...|++++|+|++++|++++.|++|++||. +++++.++ .+|.+. |++++|+|+| |+
T Consensus 464 ~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~--------------~~h~~~----v~~l~~s~dg~~l~ 524 (577)
T 2ymu_A 464 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL--------------TGHSSS----VRGVAFSPDGQTIA 524 (577)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE--------------ECCSSC----EEEEEECTTSSCEE
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE--------------eCCCCC----EEEEEEcCCCCEEE
Confidence 579999999999999999999999999999995 67887766 577654 5678999999 99
Q ss_pred EEECCCcEEEEECCCC
Q 000054 2529 SCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2529 SGS~DGtIrIWDL~sg 2544 (2548)
+++.||+|++||.+..
T Consensus 525 s~~~dg~v~lwd~~~~ 540 (577)
T 2ymu_A 525 SASDDKTVKLWNRNGQ 540 (577)
T ss_dssp EEETTSEEEEECTTSC
T ss_pred EEECcCEEEEEeCCCC
Confidence 9999999999997654
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=278.35 Aligned_cols=270 Identities=13% Similarity=0.176 Sum_probs=214.3
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
.+++|+|+|++|++|+.||.|++||..+++....+. .| ..+....|++++++|++|+.||.|++||+++
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 128 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLK----------RA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNF 128 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSC----------SC-CEEEEEEECSSSCEEEEEETTSCEEEECTTS
T ss_pred cceeeeecCCeEEEEEcCCcEEEEEecccceeeEEe----------cC-CceEEEEEecCCCEEEEEECCCCEEEEeCCC
Confidence 356788999999999999999999988765433221 12 4455557899999999999999999999987
Q ss_pred CcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCC
Q 000054 2303 GGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLG 2380 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg 2380 (2548)
+... ..+.+|...|.+ |+|+++++++++ .|+.|++||+.. .+.+..+.+|.+.|.+++|+|+
T Consensus 129 ~~~~--------~~~~~h~~~v~~~~~~~~~~~l~s~s---~d~~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~~~--- 192 (420)
T 3vl1_A 129 NLQR--------EIDQAHVSEITKLKFFPSGEALISSS---QDMQLKIWSVKD--GSNPRTLIGHRATVTDIAIIDR--- 192 (420)
T ss_dssp CEEE--------EETTSSSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTT--CCCCEEEECCSSCEEEEEEETT---
T ss_pred ccee--------eecccccCccEEEEECCCCCEEEEEe---CCCeEEEEeCCC--CcCceEEcCCCCcEEEEEEcCC---
Confidence 6532 235688888875 899999999986 899999999986 6778889999999999999998
Q ss_pred CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCC--------------------CCccccccccCCCCCC--cc
Q 000054 2381 SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGG--------------------SSINTCAHADAQTGSG--SK 2438 (2548)
Q Consensus 2381 ~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~--------------------s~~~~~~vafSpdGk~--v~ 2438 (2548)
+.+|++|+.||+|++||+ .+++.+..+...... .......+.++|+|++ ++
T Consensus 193 ----~~~l~s~~~d~~v~iwd~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 265 (420)
T 3vl1_A 193 ----GRNVLSASLDGTIRLWEC---GTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAG 265 (420)
T ss_dssp ----TTEEEEEETTSCEEEEET---TTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEE
T ss_pred ----CCEEEEEcCCCcEEEeEC---CCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEE
Confidence 789999999999999994 456666665321111 1133456788999987 66
Q ss_pred CCCCCceEEEcc---------cCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCcE-EEEecccccccccccCccc
Q 000054 2439 PGDQNGMLWYIP---------KAHLGSVTRISTVPNTS-LFLTGSKDGDVKLWDAKAAQL-VYHWSKLHERHTFLQPSSR 2507 (2548)
Q Consensus 2439 s~D~sv~Iwdi~---------~gH~~~VtsLafSPdG~-~LaSGS~DGtIrIWDl~Tgel-l~tL~~~Hs~hsfl~~tl~ 2507 (2548)
..++.+++|++. .+|...|++++|+|+++ +|++|+.||.|++||+++++. +..+ .
T Consensus 266 ~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~--------------~ 331 (420)
T 3vl1_A 266 HVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF--------------L 331 (420)
T ss_dssp ETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE--------------E
T ss_pred cCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhh--------------h
Confidence 788899999853 35888999999999998 999999999999999998753 4444 3
Q ss_pred C-CCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2508 G-FGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2508 G-H~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
+ |.. .|..+.+.+.. |++++.||+|++|++.+.
T Consensus 332 ~~~~~----~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 332 INEGT----PINNVYFAAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp ESTTS----CEEEEEEETTEEEEEETTTEEEEEEEECCT
T ss_pred ccCCC----CceEEEeCCCCEEEEecCCccEEEEeccCC
Confidence 3 333 35566666555 899999999999998763
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-25 Score=271.13 Aligned_cols=279 Identities=13% Similarity=0.174 Sum_probs=212.3
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEc----CCCc------eeEEEecc-CCCCCCCCCCCCCeEEEEEccCCCEEEEE
Q 000054 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEF----GKDK------ATATYGVL-PAANVPPPYALASISALQFDHYGHRFASA 2289 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl----~tg~------~l~t~~~l-~ghs~~~~~H~~~VtsVaFSPdG~~LaSG 2289 (2548)
+.+++|+|+|+ +|++|+.||.|++||+ .+++ ....+... .++ ....+|.+.|++++|+|++++|++|
T Consensus 48 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~ 126 (425)
T 1r5m_A 48 IVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALS-ASSGKTTNQVTCLAWSHDGNSIVTG 126 (425)
T ss_dssp CSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC-------CBCEEEEEECTTSSEEEEE
T ss_pred eEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccc-ccccCCCCceEEEEEcCCCCEEEEE
Confidence 58999999999 9999999999999999 8877 34444321 111 0122356799999999999999999
Q ss_pred eCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCC------------
Q 000054 2290 ALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPP------------ 2355 (2548)
Q Consensus 2290 S~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~------------ 2355 (2548)
+.||.|++||. +++. ...+.+|...|.+ |+|+++++++++ .|+.|++||+....
T Consensus 127 ~~dg~i~i~~~-~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~ 194 (425)
T 1r5m_A 127 VENGELRLWNK-TGAL--------LNVLNFHRAPIVSVKWNKDGTHIISMD---VENVTILWNVISGTVMQHFELKETGG 194 (425)
T ss_dssp ETTSCEEEEET-TSCE--------EEEECCCCSCEEEEEECTTSSEEEEEE---TTCCEEEEETTTTEEEEEECCC----
T ss_pred eCCCeEEEEeC-CCCe--------eeeccCCCccEEEEEECCCCCEEEEEe---cCCeEEEEECCCCcEEEEeeccccCc
Confidence 99999999993 3332 2336678887764 899999999986 89999999986421
Q ss_pred ------------------------------------------CCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeC
Q 000054 2356 ------------------------------------------TSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGK 2393 (2548)
Q Consensus 2356 ------------------------------------------~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~ 2393 (2548)
.+.+..+.+|...|.+++|+|+ +.+|++++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~-------~~~l~~~~~ 267 (425)
T 1r5m_A 195 SSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT-------NKLLLSASD 267 (425)
T ss_dssp -----------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT-------TTEEEEEET
T ss_pred cceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC-------CCEEEEEcC
Confidence 1223345578899999999998 779999999
Q ss_pred CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEEcc--------cCCCCCEEEEEEeC
Q 000054 2394 GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWYIP--------KAHLGSVTRISTVP 2464 (2548)
Q Consensus 2394 DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwdi~--------~gH~~~VtsLafSP 2464 (2548)
||.|++||++ +++.+..+.. .......+.++|++.+ +++.++.+++|++. ..|...|.+++|+|
T Consensus 268 d~~i~i~d~~---~~~~~~~~~~----~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~ 340 (425)
T 1r5m_A 268 DGTLRIWHGG---NGNSQNCFYG----HSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ 340 (425)
T ss_dssp TSCEEEECSS---SBSCSEEECC----CSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT
T ss_pred CCEEEEEECC---CCccceEecC----CCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC
Confidence 9999999954 4555555421 1223466788898844 67788899999953 46889999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc--------------------EEEEecccccccccccCcccCCCCceeecEEEEEEcC
Q 000054 2465 NTSLFLTGSKDGDVKLWDAKAAQ--------------------LVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVS 2524 (2548)
Q Consensus 2465 dG~~LaSGS~DGtIrIWDl~Tge--------------------ll~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSP 2524 (2548)
++++|++|+.||.|++||+.+++ .+..+ .+|... ..|++++|+|
T Consensus 341 ~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~--~~v~~~~~s~ 404 (425)
T 1r5m_A 341 DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASY--------------QSSQDN--DYIFDLSWNC 404 (425)
T ss_dssp TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEE--------------CCTTCC--CCEEEEEECT
T ss_pred CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhh--------------cCcccC--CceEEEEccC
Confidence 99999999999999999999877 55544 556430 0467889999
Q ss_pred Ce--EEEEECCCcEEEEECCC
Q 000054 2525 RG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2525 dG--LaSGS~DGtIrIWDL~s 2543 (2548)
++ |++++.||.|++|+++.
T Consensus 405 ~~~~l~~~~~dg~i~iw~~~g 425 (425)
T 1r5m_A 405 AGNKISVAYSLQEGSVVAIPG 425 (425)
T ss_dssp TSSEEEEEESSSCCEEEECCC
T ss_pred CCceEEEEecCceEEEEeecC
Confidence 99 88999999999999863
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-25 Score=279.43 Aligned_cols=232 Identities=22% Similarity=0.354 Sum_probs=199.5
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeE
Q 000054 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtV 2346 (2548)
+|.+.|++++|+|++.++++|+.||+|++||+.+++.. ..+.+|...|.+ |+|+++++++|+ .|++|
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~--------~~l~~h~~~V~~v~~~~~~~~l~sgs---~D~~i 174 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--------RTLKGHTDSVQDISFDHSGKLLASCS---ADMTI 174 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC--------EEECCCSSCEEEEEECTTSSEEEEEE---TTSCC
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE--------EEEeccCCcEEEEEEcCCCCEEEEEe---CCCeE
Confidence 36699999999999999999999999999999987532 347889988874 899999999997 89999
Q ss_pred EEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000054 2347 VVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2347 rIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
++||+.. .+++..+.+|.+.|.+++|+|+ +.+|++|+.||+|++|| +.++.++..+... .....
T Consensus 175 ~iwd~~~--~~~~~~~~~h~~~V~~v~~~p~-------~~~l~s~s~D~~i~~wd---~~~~~~~~~~~~h----~~~v~ 238 (410)
T 1vyh_C 175 KLWDFQG--FECIRTMHGHDHNVSSVSIMPN-------GDHIVSASRDKTIKMWE---VQTGYCVKTFTGH----REWVR 238 (410)
T ss_dssp CEEETTS--SCEEECCCCCSSCEEEEEECSS-------SSEEEEEETTSEEEEEE---TTTCCEEEEEECC----SSCEE
T ss_pred EEEeCCC--CceeEEEcCCCCCEEEEEEeCC-------CCEEEEEeCCCeEEEEE---CCCCcEEEEEeCC----CccEE
Confidence 9999976 6788889999999999999998 78999999999999999 5567777776321 22345
Q ss_pred ccccCCCCCC--ccCCCCCceEEEc--------ccCCCCCEEEEEEeCC--------------------CCEEEEEeCCC
Q 000054 2427 AHADAQTGSG--SKPGDQNGMLWYI--------PKAHLGSVTRISTVPN--------------------TSLFLTGSKDG 2476 (2548)
Q Consensus 2427 ~vafSpdGk~--v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPd--------------------G~~LaSGS~DG 2476 (2548)
.+.++++|.+ .++.|+.+++|++ +.+|...|.+++|+|+ |.+|++|+.||
T Consensus 239 ~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~ 318 (410)
T 1vyh_C 239 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318 (410)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCC
Confidence 6788999987 6778899999985 3579999999999996 67999999999
Q ss_pred cEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2477 DVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2477 tIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+|++||+++++++.++ .+|.+. |.+++|+|+| |++|+.||+|++||+.++.
T Consensus 319 ~i~iwd~~~~~~~~~~--------------~~h~~~----v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~ 371 (410)
T 1vyh_C 319 TIKMWDVSTGMCLMTL--------------VGHDNW----VRGVLFHSGGKFILSCADDKTLRVWDYKNKR 371 (410)
T ss_dssp EEEEEETTTTEEEEEE--------------ECCSSC----EEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred eEEEEECCCCceEEEE--------------ECCCCc----EEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence 9999999999998876 577754 4677999999 9999999999999998764
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=273.58 Aligned_cols=290 Identities=13% Similarity=0.095 Sum_probs=217.1
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc------eeEEEeccCCCCCCCCCCCCCeEEEEEccC----C---CEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK------ATATYGVLPAANVPPPYALASISALQFDHY----G---HRFAS 2288 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~------~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd----G---~~LaS 2288 (2548)
|.+++|+| ++|++|+.||.|++||+.+++ .+..+. .|...|++++|+|+ + ++|++
T Consensus 19 i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~~g~~~~~l~s 86 (397)
T 1sq9_A 19 IFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF----------VHKSGLHHVDVLQAIERDAFELCLVAT 86 (397)
T ss_dssp EEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE----------CCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred eEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEe----------cCCCcEEEEEEecccccCCccccEEEE
Confidence 79999999 899999999999999999887 555553 25589999999999 9 99999
Q ss_pred EeCCCcEEEEEcCCCcccccccCccceeccCC-----cccEEE--Ec----CCCCE-EEEEeccCCCCeEEEEECCCCC-
Q 000054 2289 AALDGTVCTWQLEVGGRSNVRPMESCLCFSSH-----AMDVSY--IT----SSGSV-IAAAGHSSNGINVVVWDTLAPP- 2355 (2548)
Q Consensus 2289 GS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH-----~~~V~a--fS----pdGsl-LATgG~SS~DGtVrIWDl~t~~- 2355 (2548)
++.||.|++||+.+++... ......+..| ...|.+ |+ |+++. +++++ .||.|++||++...
T Consensus 87 ~~~dg~i~iw~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETK---KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD---VKGTTYIWKFHPFAD 160 (397)
T ss_dssp EETTSCEEEEEEEECTTTC---CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE---TTSCEEEEEEESSSS
T ss_pred EcCCCCEEEEEccCCcccc---cccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEe---CCCcEEEEeCCcccc
Confidence 9999999999998775310 0012335566 466764 88 89999 99986 89999999997510
Q ss_pred ---CCcce-----ee-------eccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCC
Q 000054 2356 ---TSSRA-----SI-------TCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGG 2420 (2548)
Q Consensus 2356 ---~k~v~-----sl-------~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~ 2420 (2548)
.+.+. .+ ..|...|.+++|+|+ + ++++|+.||.|++||+ .+++.+..+.....+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~-~l~~~~~dg~i~i~d~---~~~~~~~~~~~~~~h 229 (397)
T 1sq9_A 161 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISER-------G-LIATGFNNGTVQISEL---STLRPLYNFESQHSM 229 (397)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTT-------S-EEEEECTTSEEEEEET---TTTEEEEEEECCC--
T ss_pred ccccceeeccCcceeeeeeccccCCCCCceEEEECCC-------c-eEEEEeCCCcEEEEEC---CCCceeEEEeccccc
Confidence 13333 55 348899999999998 7 9999999999999995 456666665320001
Q ss_pred --CCccccccccCCCCCC--ccCCC---CCceEEEc--------ccC-------------CCCCEEEEEEeCCCCEEEEE
Q 000054 2421 --SSINTCAHADAQTGSG--SKPGD---QNGMLWYI--------PKA-------------HLGSVTRISTVPNTSLFLTG 2472 (2548)
Q Consensus 2421 --s~~~~~~vafSpdGk~--v~s~D---~sv~Iwdi--------~~g-------------H~~~VtsLafSPdG~~LaSG 2472 (2548)
.......+.++|++.+ +++.+ +.+++|++ +.+ |...|.+++|+|++++|++|
T Consensus 230 ~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 309 (397)
T 1sq9_A 230 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 309 (397)
T ss_dssp -CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred cccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEE
Confidence 1334567889999987 55566 78999985 235 89999999999999999999
Q ss_pred eCCCcEEEEECCCCcEEEEecc-----cccccccc--cCcccCCCCceeecEEEEEEcCC-----------e-EEEEECC
Q 000054 2473 SKDGDVKLWDAKAAQLVYHWSK-----LHERHTFL--QPSSRGFGGVVRAGVTDIQVVSR-----------G-FLSCGGD 2533 (2548)
Q Consensus 2473 S~DGtIrIWDl~Tgell~tL~~-----~Hs~hsfl--~~tl~GH~~~V~a~VtsLafSPd-----------G-LaSGS~D 2533 (2548)
+.||.|++||+++++.+.++.. .|.....- .....+|. ..|.+++|+|+ . |++|+.|
T Consensus 310 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~d 385 (397)
T 1sq9_A 310 GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAE----PGVFDVKFLKKGWRSGMGADLNESLCCVCLD 385 (397)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSS----CCEEEEEEECTTTSBSTTCTTSCEEEEEETT
T ss_pred eCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccC----CceeEEEeccccccccccccccceEEEecCC
Confidence 9999999999999999988841 11000000 00012234 34678899999 3 8899999
Q ss_pred CcEEEEECCCC
Q 000054 2534 GSVKLIQLEDY 2544 (2548)
Q Consensus 2534 GtIrIWDL~sg 2544 (2548)
|.|++|++++|
T Consensus 386 g~i~iw~~~~g 396 (397)
T 1sq9_A 386 RSIRWFREAGG 396 (397)
T ss_dssp TEEEEEEEEC-
T ss_pred CcEEEEEcCCC
Confidence 99999999876
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-25 Score=265.87 Aligned_cols=252 Identities=21% Similarity=0.198 Sum_probs=196.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCC--CceeEEEeccCCCCCCCCCCCCCeEEEEEccC--CCEEEEEeCCCcEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGK--DKATATYGVLPAANVPPPYALASISALQFDHY--GHRFASAALDGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~t--g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd--G~~LaSGS~DGtVrV 2297 (2548)
|.+++|+|++++|++|+.||.|+|||+.. ++.+..+. .|.+.|++++|+++ +++|++|+.||.|++
T Consensus 14 v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 14 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT----------GHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC----------CCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred EEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec----------CCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 79999999999999999999999999984 44444442 25689999999977 999999999999999
Q ss_pred EEcCCCcccccccCccceeccCCcccEEE--EcCC--CCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSS--GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpd--GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
||+++++.. ....+.+|...|.+ |+|+ +.++++++ .|+.|++||++.........+.+|...|.+++
T Consensus 84 wd~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~ 154 (379)
T 3jrp_A 84 WKEENGRWS------QIAVHAVHSASVNSVQWAPHEYGPLLLVAS---SDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 154 (379)
T ss_dssp EEEETTEEE------EEEEECCCSSCEEEEEECCGGGCSEEEEEE---TTSEEEEEECCTTSCCCEEEEECCTTCEEEEE
T ss_pred EEcCCCcee------EeeeecCCCcceEEEEeCCCCCCCEEEEec---CCCcEEEEecCCCCceeeEEecCCCCceEEEE
Confidence 999877421 12336678877874 8898 89999987 89999999998753445667789999999999
Q ss_pred EccCCCC------CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEE
Q 000054 2374 VFDNDLG------SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLW 2447 (2548)
Q Consensus 2374 fsP~dlg------~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iw 2447 (2548)
|+|.... ....+.++++|+.||.|++||++ +++.... +.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~---~~~~~~~--------------------------------~~ 199 (379)
T 3jrp_A 155 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN---SDAQTYV--------------------------------LE 199 (379)
T ss_dssp ECCCC----------CTTCEEEEEETTSCEEEEEEE---TTTTEEE--------------------------------EE
T ss_pred EcCccccccccccCCCCCCEEEEEeCCCeEEEEEec---CCCccee--------------------------------eE
Confidence 9994000 00016799999999999999964 2221111 11
Q ss_pred EcccCCCCCEEEEEEeCC---CCEEEEEeCCCcEEEEECCCCc---EEEEecccccccccccCcccCCCCceeecEEEEE
Q 000054 2448 YIPKAHLGSVTRISTVPN---TSLFLTGSKDGDVKLWDAKAAQ---LVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQ 2521 (2548)
Q Consensus 2448 di~~gH~~~VtsLafSPd---G~~LaSGS~DGtIrIWDl~Tge---ll~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLa 2521 (2548)
..+.+|...|.+++|+|+ +.+|++|+.||.|++||+++++ ....+ ...+|. ..|++++
T Consensus 200 ~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------~~~~~~----~~v~~~~ 263 (379)
T 3jrp_A 200 STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLL------------KEEKFP----DVLWRAS 263 (379)
T ss_dssp EEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEES------------SSSCCS----SCEEEEE
T ss_pred EEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeee------------ccccCC----CcEEEEE
Confidence 123679999999999999 8999999999999999999864 22211 013344 3467889
Q ss_pred EcCCe--EEEEECCCcEEEEECCC
Q 000054 2522 VVSRG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2522 fSPdG--LaSGS~DGtIrIWDL~s 2543 (2548)
|+|+| |++++.||.|++|++..
T Consensus 264 ~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 264 WSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp ECSSSCCEEEEESSSSEEEEEEEE
T ss_pred EcCCCCEEEEecCCCcEEEEeCCC
Confidence 99999 89999999999999873
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=268.55 Aligned_cols=276 Identities=9% Similarity=0.042 Sum_probs=211.3
Q ss_pred EEEEEEcCC----CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC----CCEEEEEeCCC
Q 000054 2222 TRAFSSHPL----RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY----GHRFASAALDG 2293 (2548)
Q Consensus 2222 V~~VsfSPd----G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd----G~~LaSGS~DG 2293 (2548)
+.+++|+|+ ...+++++.++.|++||+.+++.+..+..+.. ..|.+.|++++|+|+ +++|++|+.||
T Consensus 21 v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg 95 (366)
T 3k26_A 21 LFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVD-----ADADENFYTCAWTYDSNTSHPLLAVAGSRG 95 (366)
T ss_dssp EEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEEC-----SCTTCCEEEEEEEECTTTCCEEEEEEETTC
T ss_pred eEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccc-----cCCCCcEEEEEeccCCCCCCCEEEEecCCC
Confidence 799999984 56777778888999999998888777765332 235688999999998 67999999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEE--EcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceee---eccCC
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI---TCHEG 2367 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl---~gHs~ 2367 (2548)
.|++||+.+++.. ..+.+|...|.+ |+| +++++++++ .||.|++||++. .+.+..+ .+|..
T Consensus 96 ~i~v~d~~~~~~~--------~~~~~~~~~i~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~--~~~~~~~~~~~~~~~ 162 (366)
T 3k26_A 96 IIRIINPITMQCI--------KHYVGHGNAINELKFHPRDPNLLLSVS---KDHALRLWNIQT--DTLVAIFGGVEGHRD 162 (366)
T ss_dssp EEEEECTTTCCEE--------EEEESCCSCEEEEEECSSCTTEEEEEE---TTSCEEEEETTT--TEEEEEECSTTSCSS
T ss_pred EEEEEEchhceEe--------eeecCCCCcEEEEEECCCCCCEEEEEe---CCCeEEEEEeec--CeEEEEecccccccC
Confidence 9999999877533 336678888875 888 899999987 899999999986 5666666 68999
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecC------------------------CCCCCCc
Q 000054 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHS------------------------DRGGSSI 2423 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~------------------------~~~~s~~ 2423 (2548)
.|.+++|+|+ +.+|++|+.||.|++||++. ++....+.. .......
T Consensus 163 ~v~~~~~~~~-------~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T 3k26_A 163 EVLSADYDLL-------GEKIMSCGMDHSLKLWRINS---KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRN 232 (366)
T ss_dssp CEEEEEECTT-------SSEEEEEETTSCEEEEESCS---HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSS
T ss_pred ceeEEEECCC-------CCEEEEecCCCCEEEEECCC---CccccccceeEEecCCCCcccccceeeccCccccccCCcc
Confidence 9999999998 78999999999999999653 322211100 0000112
Q ss_pred cccccccCCCCCC--ccCCCCCceEEEcc----------------------cCCCCCEEEEEEeCC--CCEEEEEeCCCc
Q 000054 2424 NTCAHADAQTGSG--SKPGDQNGMLWYIP----------------------KAHLGSVTRISTVPN--TSLFLTGSKDGD 2477 (2548)
Q Consensus 2424 ~~~~vafSpdGk~--v~s~D~sv~Iwdi~----------------------~gH~~~VtsLafSPd--G~~LaSGS~DGt 2477 (2548)
....+.++ +.+ +++.++.+++|++. .+|...|++++|+|+ +++|++|+.||.
T Consensus 233 ~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~ 310 (366)
T 3k26_A 233 YVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGK 310 (366)
T ss_dssp CCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSC
T ss_pred eEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCc
Confidence 23344455 333 66778889999853 247778999999999 999999999999
Q ss_pred EEEEECCCCcEE----EEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCC
Q 000054 2478 VKLWDAKAAQLV----YHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2478 IrIWDl~Tgell----~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~s 2543 (2548)
|++||+.+++.. ..+ .+|.. ...|++++|+|++ |++|+.||.|++||+.+
T Consensus 311 i~vwd~~~~~~~~~~~~~~--------------~~~~~--~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 311 LYVWDLEVEDPHKAKCTTL--------------THHKC--GAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEEECCSSSGGGCEEEEE--------------CCTTC--CSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEEEECCCCCCccccceEE--------------ccccc--CCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 999999987632 233 44420 1346788999999 89999999999999853
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-25 Score=272.74 Aligned_cols=273 Identities=14% Similarity=0.172 Sum_probs=220.1
Q ss_pred eEEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2220 V~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
+.+.+++|++ ..+++++.||.|++||..+++....+.. .|.+.|++++|+|++++|++|+.||.|++||
T Consensus 94 ~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~---------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 162 (401)
T 4aez_A 94 YYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAET---------DESTYVASVKWSHDGSFLSVGLGNGLVDIYD 162 (401)
T ss_dssp TTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEEC---------CTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeec---------CCCCCEEEEEECCCCCEEEEECCCCeEEEEE
Confidence 3356777765 4588899999999999999988777643 1458899999999999999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
+.+++.. ..+.+|...|.++..+++.+++++ .||.|++||++.. ...+..+.+|.+.|.+++|+|+
T Consensus 163 ~~~~~~~--------~~~~~~~~~v~~~~~~~~~l~~~~---~dg~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~-- 228 (401)
T 4aez_A 163 VESQTKL--------RTMAGHQARVGCLSWNRHVLSSGS---RSGAIHHHDVRIA-NHQIGTLQGHSSEVCGLAWRSD-- 228 (401)
T ss_dssp TTTCCEE--------EEECCCSSCEEEEEEETTEEEEEE---TTSEEEEEETTSS-SCEEEEEECCSSCEEEEEECTT--
T ss_pred CcCCeEE--------EEecCCCCceEEEEECCCEEEEEc---CCCCEEEEecccC-cceeeEEcCCCCCeeEEEEcCC--
Confidence 9877533 336688888987666889999986 8999999999853 5567888899999999999997
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--c---cCCCCCceEEEccc---
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--S---KPGDQNGMLWYIPK--- 2451 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v---~s~D~sv~Iwdi~~--- 2451 (2548)
+.+|++|+.||.|++||++ +++.+..+.. .......+.++|++.. + +..++.+++|++..
T Consensus 229 -----~~~l~s~~~d~~v~iwd~~---~~~~~~~~~~----~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~ 296 (401)
T 4aez_A 229 -----GLQLASGGNDNVVQIWDAR---SSIPKFTKTN----HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR 296 (401)
T ss_dssp -----SSEEEEEETTSCEEEEETT---CSSEEEEECC----CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE
T ss_pred -----CCEEEEEeCCCeEEEccCC---CCCccEEecC----CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE
Confidence 7899999999999999954 5666655521 1233567889998765 2 22589999999643
Q ss_pred ----CCCCCEEEEEEeCCCCEEEEE--eCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCC
Q 000054 2452 ----AHLGSVTRISTVPNTSLFLTG--SKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSR 2525 (2548)
Q Consensus 2452 ----gH~~~VtsLafSPdG~~LaSG--S~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPd 2525 (2548)
.|...|.+++|+|++++++++ +.||.|++||+.+++...... +.+|.+. |.+++|+|+
T Consensus 297 ~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~------------~~~h~~~----v~~~~~s~d 360 (401)
T 4aez_A 297 VNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVD------------IPAHDTR----VLYSALSPD 360 (401)
T ss_dssp EEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEE------------EECCSSC----CCEEEECTT
T ss_pred EEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEE------------ecCCCCC----EEEEEECCC
Confidence 367789999999999999995 489999999999877665441 3567654 466799999
Q ss_pred e--EEEEECCCcEEEEECCCCc
Q 000054 2526 G--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2526 G--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
| |++++.||+|++|++.++.
T Consensus 361 g~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 361 GRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp SSEEEEECTTSEEEEEECCC--
T ss_pred CCEEEEEeCCCcEEEEECCCCc
Confidence 9 8999999999999998764
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-24 Score=286.96 Aligned_cols=253 Identities=19% Similarity=0.252 Sum_probs=195.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+|++++|++|+.||+|+|||+.+++....+.. |.+.|.+++|+|++++|++|+.||+|++||+.
T Consensus 433 v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~----------h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~ 502 (694)
T 3dm0_A 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVG----------HTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL 502 (694)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC----------CSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeC----------CCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC
Confidence 68999999999999999999999999999988877643 56899999999999999999999999999986
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCC--CEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSG--SVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdG--slLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
....... .....+|...|.+ |+|++ ..+++++ .|++|++||++. .+....+.+|.+.|++++|+|+
T Consensus 503 ~~~~~~~-----~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---~d~~v~vwd~~~--~~~~~~~~~h~~~v~~v~~spd 572 (694)
T 3dm0_A 503 GECKYTI-----SEGGEGHRDWVSCVRFSPNTLQPTIVSAS---WDKTVKVWNLSN--CKLRSTLAGHTGYVSTVAVSPD 572 (694)
T ss_dssp SCEEEEE-----CSSTTSCSSCEEEEEECSCSSSCEEEEEE---TTSCEEEEETTT--CCEEEEECCCSSCEEEEEECTT
T ss_pred CCcceee-----ccCCCCCCCcEEEEEEeCCCCcceEEEEe---CCCeEEEEECCC--CcEEEEEcCCCCCEEEEEEeCC
Confidence 5432111 1123567777764 88876 5788886 899999999986 6778889999999999999998
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCE
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSV 2457 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~V 2457 (2548)
+.+|++|+.||+|++||+ .+++.+..+ .+...|
T Consensus 573 -------g~~l~sg~~Dg~i~iwd~---~~~~~~~~~-------------------------------------~~~~~v 605 (694)
T 3dm0_A 573 -------GSLCASGGKDGVVLLWDL---AEGKKLYSL-------------------------------------EANSVI 605 (694)
T ss_dssp -------SSEEEEEETTSBCEEEET---TTTEEEECC-------------------------------------BCSSCE
T ss_pred -------CCEEEEEeCCCeEEEEEC---CCCceEEEe-------------------------------------cCCCcE
Confidence 789999999999999994 456555443 234579
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCC--ceeecEEEEEEcCCe--EEEEECC
Q 000054 2458 TRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGG--VVRAGVTDIQVVSRG--FLSCGGD 2533 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~--~V~a~VtsLafSPdG--LaSGS~D 2533 (2548)
.+++|+|++.++++++ |+.|+|||+++++.+..+......... .....++.. .....+++++|+|+| |+||+.|
T Consensus 606 ~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~D 683 (694)
T 3dm0_A 606 HALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAE-KADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTD 683 (694)
T ss_dssp EEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC-----------------CCCCEEEEEECTTSSEEEEEETT
T ss_pred EEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccc-cccccccccCCceeEEeeeEEEcCCCCEEEEEcCC
Confidence 9999999999888775 566999999999999877422111000 000001100 000236789999999 9999999
Q ss_pred CcEEEEECCC
Q 000054 2534 GSVKLIQLED 2543 (2548)
Q Consensus 2534 GtIrIWDL~s 2543 (2548)
|+|++|++..
T Consensus 684 g~i~iW~i~~ 693 (694)
T 3dm0_A 684 GVIRVWGIGR 693 (694)
T ss_dssp SEEEEEEC--
T ss_pred CeEEEEeccC
Confidence 9999999853
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-24 Score=261.19 Aligned_cols=226 Identities=15% Similarity=0.222 Sum_probs=187.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+|+|++|++|+.|++|++||+.+++.+..+.. |.+.|.+++|+|++.++++|+.||+|++||++
T Consensus 68 v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~----------h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~ 137 (319)
T 3frx_A 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVG----------HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137 (319)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC----------CSSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEcc----------CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 68899999999999999999999999999998877753 55899999999999999999999999999997
Q ss_pred CCcccccccCccceeccCCcccEEE--EcC------CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITS------SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSp------dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
... ...+.+|...|.+ +.| ++..+++++ .|+.|++||++. .+....+.+|...|++++
T Consensus 138 ~~~---------~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~---~d~~i~~wd~~~--~~~~~~~~~h~~~v~~~~ 203 (319)
T 3frx_A 138 GQC---------LATLLGHNDWVSQVRVVPNEKADDDSVTIISAG---NDKMVKAWNLNQ--FQIEADFIGHNSNINTLT 203 (319)
T ss_dssp SCE---------EEEECCCSSCEEEEEECCC------CCEEEEEE---TTSCEEEEETTT--TEEEEEECCCCSCEEEEE
T ss_pred CCe---------EEEEeccCCcEEEEEEccCCCCCCCccEEEEEe---CCCEEEEEECCc--chhheeecCCCCcEEEEE
Confidence 431 2346678877764 555 445888886 899999999976 567778889999999999
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEEcc--
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWYIP-- 2450 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwdi~-- 2450 (2548)
|+|+ +.+|++|+.||+|++|| +.+++.+..+.. ......++|+|++.. ++..+..+++|++.
T Consensus 204 ~sp~-------g~~l~s~~~dg~i~iwd---~~~~~~~~~~~~-----~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~ 268 (319)
T 3frx_A 204 ASPD-------GTLIASAGKDGEIMLWN---LAAKKAMYTLSA-----QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268 (319)
T ss_dssp ECTT-------SSEEEEEETTCEEEEEE---TTTTEEEEEEEC-----CSCEEEEEECSSSSEEEEEETTEEEEEEETTE
T ss_pred EcCC-------CCEEEEEeCCCeEEEEE---CCCCcEEEEecC-----CCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcC
Confidence 9998 78999999999999999 456677666532 123567899999988 44455567888742
Q ss_pred --------------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 000054 2451 --------------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAA 2486 (2548)
Q Consensus 2451 --------------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tg 2486 (2548)
..|...|.+++|+|+|++|++|+.||.|+|||+.++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 269 YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred eeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 235678999999999999999999999999998764
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.9e-25 Score=276.43 Aligned_cols=288 Identities=14% Similarity=0.176 Sum_probs=208.2
Q ss_pred EEEEEEcC-CCCEEEEEECCCeEEEEEcCC---CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEE
Q 000054 2222 TRAFSSHP-LRPFFLVGSSNTHIYLWEFGK---DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSP-dG~~LASGS~DGsVrLWDl~t---g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrV 2297 (2548)
|.+++|+| ++++|++|+.||+|+|||+.+ +....... ...|.+.|++++|+|++++|++|+.||+|++
T Consensus 66 V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~--------~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~v 137 (437)
T 3gre_A 66 ITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL--------TYDCSSTVTQITMIPNFDAFAVSSKDGQIIV 137 (437)
T ss_dssp EEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE--------EEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee--------eccCCCCEEEEEEeCCCCEEEEEeCCCEEEE
Confidence 79999999 999999999999999999876 43111100 0125689999999999999999999999999
Q ss_pred EEcC---CCcccccccCcccee--ccC--CcccEEE----EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeec--
Q 000054 2298 WQLE---VGGRSNVRPMESCLC--FSS--HAMDVSY----ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC-- 2364 (2548)
Q Consensus 2298 WDl~---tgk~i~i~p~~s~~t--~~g--H~~~V~a----fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g-- 2364 (2548)
||++ +++............ +.. +...+.+ +++++.++++++ .|+.|++||++. .+.+..+.+
T Consensus 138 wd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~--~~~~~~~~~~~ 212 (437)
T 3gre_A 138 LKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALT---NLSRVIIFDIRT--LERLQIIENSP 212 (437)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEE---TTSEEEEEETTT--CCEEEEEECCG
T ss_pred EEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEe---CCCeEEEEeCCC--CeeeEEEccCC
Confidence 9995 443222111111111 111 3333432 568899999987 899999999986 677888887
Q ss_pred cCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccc----ccCCCCCC--cc
Q 000054 2365 HEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAH----ADAQTGSG--SK 2438 (2548)
Q Consensus 2365 Hs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~v----afSpdGk~--v~ 2438 (2548)
|.+.|++++|+|+ +.+|++|+.||.|++||++ +++.+..+.... ......+ .+++++.+ .+
T Consensus 213 h~~~v~~~~~s~~-------~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~---~~~v~~~~~~~~~s~~~~~l~s~ 279 (437)
T 3gre_A 213 RHGAVSSICIDEE-------CCVLILGTTRGIIDIWDIR---FNVLIRSWSFGD---HAPITHVEVCQFYGKNSVIVVGG 279 (437)
T ss_dssp GGCCEEEEEECTT-------SCEEEEEETTSCEEEEETT---TTEEEEEEBCTT---CEEEEEEEECTTTCTTEEEEEEE
T ss_pred CCCceEEEEECCC-------CCEEEEEcCCCeEEEEEcC---CccEEEEEecCC---CCceEEEEeccccCCCccEEEEE
Confidence 8999999999998 7899999999999999954 567766652111 1123344 56677766 56
Q ss_pred CCCCCceEEEccc--------------------------------C--CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 000054 2439 PGDQNGMLWYIPK--------------------------------A--HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2439 s~D~sv~Iwdi~~--------------------------------g--H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
+.|+.+++|++.. + |...|++++|+ ++++|++|+.||.|++||+.
T Consensus 280 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~ 358 (437)
T 3gre_A 280 SSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLN 358 (437)
T ss_dssp STTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETT
T ss_pred cCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECC
Confidence 7788899998531 1 66779999999 78999999999999999999
Q ss_pred CCcEEEEecccccc-ccc----------------------ccCcccCCCCceeecEEEEEEcCC--e--EEEEECCCcEE
Q 000054 2485 AAQLVYHWSKLHER-HTF----------------------LQPSSRGFGGVVRAGVTDIQVVSR--G--FLSCGGDGSVK 2537 (2548)
Q Consensus 2485 Tgell~tL~~~Hs~-hsf----------------------l~~tl~GH~~~V~a~VtsLafSPd--G--LaSGS~DGtIr 2537 (2548)
+++.+..+.+.... ..+ ....+.+|.+ .|++++|+++ + |+||+.||+|+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----~I~~i~~~~~~~~~~l~s~~~dG~I~ 434 (437)
T 3gre_A 359 ELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHD----IINSISTCEVDETPLLVACDNSGLIG 434 (437)
T ss_dssp CGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CC----CEEEEEEEESSSSEEEEEEETTSCEE
T ss_pred CcccceEEecccccCceEEEEEeecceEEEEEecccccccccCccccccc----ceeeEeeeccCCceEEEEEcCCceEE
Confidence 99887777421000 000 0011233654 4567788887 4 89999999999
Q ss_pred EEE
Q 000054 2538 LIQ 2540 (2548)
Q Consensus 2538 IWD 2540 (2548)
+|+
T Consensus 435 iw~ 437 (437)
T 3gre_A 435 IFQ 437 (437)
T ss_dssp EEC
T ss_pred EeC
Confidence 995
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=261.76 Aligned_cols=257 Identities=12% Similarity=0.068 Sum_probs=199.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc--eeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK--ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~--~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
+.+++|+|++++|++|+.||.|++||+.+++ .+..+.. |.+.|++++|+|++++|++++.||.|++||
T Consensus 11 i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~----------h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE----------HNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC----------CSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecC----------CCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence 5899999999999999999999999999887 5666542 558999999999999999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCC--cceeeeccCCCeEEEEEc
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTS--SRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k--~v~sl~gHs~~VtSLafs 2375 (2548)
+++++.... .....|...|.+ |+|+++++++++ .|+.|++||++..... ......+|...|.+++|+
T Consensus 81 ~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 151 (372)
T 1k8k_C 81 LKGRTWKPT------LVILRINRAARCVRWAPNEKKFAVGS---GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH 151 (372)
T ss_dssp EETTEEEEE------EECCCCSSCEEEEEECTTSSEEEEEE---TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred CCCCeeeee------EEeecCCCceeEEEECCCCCEEEEEe---CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEc
Confidence 987642211 224567777764 899999999987 8999999999863211 123335789999999999
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCC
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG 2455 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~ 2455 (2548)
|+ +.++++|+.||.|++||++........ .................+.+|..
T Consensus 152 ~~-------~~~l~~~~~dg~i~~~d~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~ 203 (372)
T 1k8k_C 152 PN-------SVLLAAGSCDFKCRIFSAYIKEVEERP---------------------APTPWGSKMPFGELMFESSSSCG 203 (372)
T ss_dssp TT-------SSEEEEEETTSCEEEEECCCTTTSCCC---------------------CCBTTBSCCCTTCEEEECCCCSS
T ss_pred CC-------CCEEEEEcCCCCEEEEEcccccccccc---------------------cccccccccchhhheEecCCCCC
Confidence 98 789999999999999996521100000 00000000111233334468999
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCC
Q 000054 2456 SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDG 2534 (2548)
Q Consensus 2456 ~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DG 2534 (2548)
.|.+++|+|++++|++++.||.|++||+++++++.++ .+|.. .|.+++|+|++ +++++.||
T Consensus 204 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--------------~~~~~----~v~~~~~~~~~~~l~~~~d~ 265 (372)
T 1k8k_C 204 WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL--------------ASETL----PLLAVTFITESSLVAAGHDC 265 (372)
T ss_dssp CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE--------------ECSSC----CEEEEEEEETTEEEEEETTS
T ss_pred eEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE--------------ccCCC----CeEEEEEecCCCEEEEEeCC
Confidence 9999999999999999999999999999999998877 45543 35778999999 66566999
Q ss_pred cEEEEECCC
Q 000054 2535 SVKLIQLED 2543 (2548)
Q Consensus 2535 tIrIWDL~s 2543 (2548)
.|++|++.+
T Consensus 266 ~i~i~~~~~ 274 (372)
T 1k8k_C 266 FPVLFTYDS 274 (372)
T ss_dssp SCEEEEEET
T ss_pred eEEEEEccC
Confidence 999999987
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-24 Score=288.25 Aligned_cols=277 Identities=14% Similarity=0.225 Sum_probs=227.1
Q ss_pred ccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000054 2216 TVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
.+.+|. +.+++|+|+|+++++|+.||.|+|||+.+++.+..+.. |.+.|++++|+|++++|++|+.||
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~----------~~~~v~~~~~s~~~~~l~~~~~dg 77 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQV----------TETPVRAGKFIARKNWIIVGSDDF 77 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC----------CSSCEEEEEEEGGGTEEEEEETTS
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEec----------CCCcEEEEEEeCCCCEEEEEeCCC
Confidence 444444 79999999999999999999999999999998888753 458899999999999999999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
.|++||+.+++.. ..+.+|...|.+ |+|+++.+++++ .||.|++||+... ......+.+|.+.|.+
T Consensus 78 ~i~vw~~~~~~~~--------~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~vw~~~~~-~~~~~~~~~~~~~v~~ 145 (814)
T 3mkq_A 78 RIRVFNYNTGEKV--------VDFEAHPDYIRSIAVHPTKPYVLSGS---DDLTVKLWNWENN-WALEQTFEGHEHFVMC 145 (814)
T ss_dssp EEEEEETTTCCEE--------EEEECCSSCEEEEEECSSSSEEEEEE---TTSEEEEEEGGGT-SEEEEEEECCSSCEEE
T ss_pred eEEEEECCCCcEE--------EEEecCCCCEEEEEEeCCCCEEEEEc---CCCEEEEEECCCC-ceEEEEEcCCCCcEEE
Confidence 9999999987643 236678888874 899999999986 8999999999752 3567788899999999
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCC--CCCC--ccCCCCCceEE
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQ--TGSG--SKPGDQNGMLW 2447 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSp--dGk~--v~s~D~sv~Iw 2447 (2548)
++|+|.+ +..+++|+.||+|++||++ +++....+.. ........+.++| ++.. +++.++.+++|
T Consensus 146 ~~~~p~~------~~~l~~~~~dg~v~vwd~~---~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~ 213 (814)
T 3mkq_A 146 VAFNPKD------PSTFASGCLDRTVKVWSLG---QSTPNFTLTT---GQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213 (814)
T ss_dssp EEEETTE------EEEEEEEETTSEEEEEETT---CSSCSEEEEC---CCTTCCCEEEECCSTTCCEEEEECTTSEEEEE
T ss_pred EEEEcCC------CCEEEEEeCCCeEEEEECC---CCcceeEEec---CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 9999943 6799999999999999954 3444444321 1112345567777 7776 66778899999
Q ss_pred Ec--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEE
Q 000054 2448 YI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTD 2519 (2548)
Q Consensus 2448 di--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vts 2519 (2548)
+. +.+|.+.|.+++|+|+++++++|+.||.|++||+.+++.+.++ ..|.. .+++
T Consensus 214 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~--------------~~~~~----~v~~ 275 (814)
T 3mkq_A 214 DYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL--------------NVGLE----RSWC 275 (814)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEE--------------CCSSS----SEEE
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe--------------ecCCC----cEEE
Confidence 85 3468999999999999999999999999999999999998877 34443 3567
Q ss_pred EEEcCCe---EEEEECCCcEEEEECCCC
Q 000054 2520 IQVVSRG---FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2520 LafSPdG---LaSGS~DGtIrIWDL~sg 2544 (2548)
++|+|+| +++++.|+.+.+|++.++
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (814)
T 3mkq_A 276 IATHPTGRKNYIASGFDNGFTVLSLGND 303 (814)
T ss_dssp EEECTTCGGGEEEEEETTEEEEEECSCC
T ss_pred EEEccCCCceEEEEEeCCCEEEEEcCCC
Confidence 7999998 577777888999998754
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=262.01 Aligned_cols=234 Identities=20% Similarity=0.258 Sum_probs=195.1
Q ss_pred CCCCCeEEEEEccC----CCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCC
Q 000054 2269 YALASISALQFDHY----GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSN 2342 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPd----G~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~ 2342 (2548)
+|.+.|++++|+|+ +.+|+||+.||+|++|+++.+... ....+.+|...|.+ +++++.++++++ .
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~------~~~~l~gh~~~v~~~~~~~~~~~l~s~s---~ 100 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD------LQWSLEGHQLGVVSVDISHTLPIAASSS---L 100 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE------EEEEECCCSSCEEEEEECSSSSEEEEEE---T
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee------eeeeeccCCCCEEEEEECCCCCEEEEEe---C
Confidence 46799999999874 678999999999999999865321 12347899998875 889999999986 8
Q ss_pred CCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCC
Q 000054 2343 GINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSS 2422 (2548)
Q Consensus 2343 DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~ 2422 (2548)
|++|++||+.+ ++.+..+..|...+.+++|+|+ +++|++|+.||.|++||+ .+++....+.. ..
T Consensus 101 D~~i~lWd~~~--~~~~~~~~~~~~~~~~~~~spd-------g~~l~~g~~dg~v~i~~~---~~~~~~~~~~~----~~ 164 (321)
T 3ow8_A 101 DAHIRLWDLEN--GKQIKSIDAGPVDAWTLAFSPD-------SQYLATGTHVGKVNIFGV---ESGKKEYSLDT----RG 164 (321)
T ss_dssp TSEEEEEETTT--TEEEEEEECCTTCCCCEEECTT-------SSEEEEECTTSEEEEEET---TTCSEEEEEEC----SS
T ss_pred CCcEEEEECCC--CCEEEEEeCCCccEEEEEECCC-------CCEEEEEcCCCcEEEEEc---CCCceeEEecC----CC
Confidence 99999999986 6778888899999999999998 789999999999999994 45666555421 12
Q ss_pred ccccccccCCCCCC--ccCCCCCceEEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2423 INTCAHADAQTGSG--SKPGDQNGMLWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2423 ~~~~~vafSpdGk~--v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
.....++++|+|++ +++.|+.+++|++ +.+|...|++++|+|++++|++|+.||+|++||+++++.+.++
T Consensus 165 ~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~ 244 (321)
T 3ow8_A 165 KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTL 244 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred ceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEE
Confidence 23456889999998 6678899999985 3579999999999999999999999999999999999888766
Q ss_pred cccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2493 SKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2493 ~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.+|.+. |.+++|+|++ |++|+.||+|++||+.++.
T Consensus 245 --------------~~h~~~----v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~ 281 (321)
T 3ow8_A 245 --------------SGHASW----VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT 281 (321)
T ss_dssp --------------CCCSSC----EEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred --------------cCCCCc----eEEEEECCCCCEEEEEeCCCcEEEEeCCCCE
Confidence 677654 5677999999 8999999999999998764
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-24 Score=300.23 Aligned_cols=271 Identities=14% Similarity=0.205 Sum_probs=227.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+|+|+++++|+.||+|++||+.+++.+..+.. |.+.|++++|+|+++++++|+.||+|++||+.
T Consensus 618 v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~----------h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 618 VYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA----------HEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC----------CSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEecc----------CCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 79999999999999999999999999999998887742 56899999999999999999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEE--EcC--CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITS--SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSp--dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
+++.. ..+.+|...|.+ |++ ++.++++++ .|+.|++||+.+ ++++..+.+|.+.|++++|+|+
T Consensus 688 ~~~~~--------~~~~~~~~~v~~~~~~~~~~~~~l~sg~---~d~~v~vwd~~~--~~~~~~~~~h~~~v~~~~~sp~ 754 (1249)
T 3sfz_A 688 TGKLV--------HTYDEHSEQVNCCHFTNKSNHLLLATGS---NDFFLKLWDLNQ--KECRNTMFGHTNSVNHCRFSPD 754 (1249)
T ss_dssp TCCEE--------EEEECCSSCEEEEEECSSSSCCEEEEEE---TTSCEEEEETTS--SSEEEEECCCSSCEEEEEECSS
T ss_pred CCceE--------EEEcCCCCcEEEEEEecCCCceEEEEEe---CCCeEEEEECCC--cchhheecCCCCCEEEEEEecC
Confidence 87643 346788888874 777 455788876 899999999986 6788889999999999999998
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCC---------CCCCccccccccCCCCCC-ccCCCCCceEE
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDR---------GGSSINTCAHADAQTGSG-SKPGDQNGMLW 2447 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~---------~~s~~~~~~vafSpdGk~-v~s~D~sv~Iw 2447 (2548)
++.+++|+.||+|++||+ .+++....+.... .........++++|+|.. +...++.+.+|
T Consensus 755 -------~~~l~s~s~dg~v~vwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~ 824 (1249)
T 3sfz_A 755 -------DELLASCSADGTLRLWDV---RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF 824 (1249)
T ss_dssp -------TTEEEEEESSSEEEEEEG---GGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEE
T ss_pred -------CCEEEEEECCCeEEEEeC---CCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEE
Confidence 789999999999999995 4555554432111 111224567789999998 55557888999
Q ss_pred Ecc---------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEE
Q 000054 2448 YIP---------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVT 2518 (2548)
Q Consensus 2448 di~---------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vt 2518 (2548)
+.. .+|...|.+++|+|+++++++|+.||.|++||+.+++.+..+ .+|.+. |.
T Consensus 825 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~--------------~~h~~~----v~ 886 (1249)
T 3sfz_A 825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADC--------------RGHLSW----VH 886 (1249)
T ss_dssp ETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEE--------------CCCSSC----EE
T ss_pred EecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeec--------------CCCccc----eE
Confidence 853 378999999999999999999999999999999999988766 577654 56
Q ss_pred EEEEcCCe--EEEEECCCcEEEEECCC
Q 000054 2519 DIQVVSRG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2519 sLafSPdG--LaSGS~DGtIrIWDL~s 2543 (2548)
+++|+|+| +++++.||+|++|++.+
T Consensus 887 ~v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 887 GVMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEccc
Confidence 77999999 89999999999999753
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-24 Score=263.27 Aligned_cols=243 Identities=18% Similarity=0.215 Sum_probs=188.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc--eeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK--ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~--~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
|.+++|+|+|++|++|+.|++|++||..++. .+..+ . +|.+.|.+++|+|++++|++|+.||+|++||
T Consensus 64 v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~---~-------~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd 133 (345)
T 3fm0_A 64 VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTL---E-------GHENEVKSVAWAPSGNLLATCSRDKSVWVWE 133 (345)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEE---C-------CCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEc---c-------CCCCCceEEEEeCCCCEEEEEECCCeEEEEE
Confidence 6899999999999999999999999998764 33343 2 3568999999999999999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
++++.... ....+.+|...|.+ |+|++++|++++ .|+.|++||.+.....+...+.+|.+.|++++|+|+
T Consensus 134 ~~~~~~~~-----~~~~~~~h~~~v~~~~~~p~~~~l~s~s---~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~ 205 (345)
T 3fm0_A 134 VDEEDEYE-----CVSVLNSHTQDVKHVVWHPSQELLASAS---YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPS 205 (345)
T ss_dssp ECTTSCEE-----EEEEECCCCSCEEEEEECSSSSCEEEEE---TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTT
T ss_pred CCCCCCeE-----EEEEecCcCCCeEEEEECCCCCEEEEEe---CCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCC
Confidence 98664221 23346788888864 899999999986 899999999876322356788899999999999998
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccC------------ceeeeecCCCCCCCccccccccCCCCCC--ccCCCCC
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATG------------KTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQN 2443 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TG------------k~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~s 2443 (2548)
+.+|++|+.||+|++||.+..... +++..+ ..........+++++++.. .++.|+.
T Consensus 206 -------g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~v~~~~~~~~l~s~~~d~~ 275 (345)
T 3fm0_A 206 -------GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL---SGFHSRTIYDIAWCQLTGALATACGDDA 275 (345)
T ss_dssp -------SSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEE---CSSCSSCEEEEEECTTTCCEEEEETTSC
T ss_pred -------CCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEe---cCCCCCcEEEEEEecCCCEEEEEeCCCe
Confidence 789999999999999996421111 112222 1111223456788998887 6678899
Q ss_pred ceEEEcc-----------------cCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2444 GMLWYIP-----------------KAHLGSVTRISTVPNT-SLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2444 v~Iwdi~-----------------~gH~~~VtsLafSPdG-~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
+++|+.. .+|...|++++|+|++ .+|++|+.||+|++|++.+++....+
T Consensus 276 i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 276 IRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp EEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred EEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 9999742 4789999999999987 59999999999999999988876544
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=269.54 Aligned_cols=261 Identities=10% Similarity=0.125 Sum_probs=190.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc-----------eeEEEeccCCCCCCCCCCC------------CCeEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK-----------ATATYGVLPAANVPPPYAL------------ASISALQ 2278 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~-----------~l~t~~~l~ghs~~~~~H~------------~~VtsVa 2278 (2548)
|.+++|+|+|++||+|+.||.|+|||+.+++ ....+. +|. +.|++++
T Consensus 31 V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~----------~h~~~~~~~~~~~~~~~V~~l~ 100 (447)
T 3dw8_B 31 ISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ----------SHEPEFDYLKSLEIEEKINKIR 100 (447)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE----------CCCCEEEGGGTEEECCCCCEEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc----------cccccccccccccccCceEEEE
Confidence 6999999999999999999999999999776 244443 244 7899999
Q ss_pred EccCC--CEEEEEeCCCcEEEEEcCCCccccc-------------------ccC------------ccc-eeccCCcccE
Q 000054 2279 FDHYG--HRFASAALDGTVCTWQLEVGGRSNV-------------------RPM------------ESC-LCFSSHAMDV 2324 (2548)
Q Consensus 2279 FSPdG--~~LaSGS~DGtVrVWDl~tgk~i~i-------------------~p~------------~s~-~t~~gH~~~V 2324 (2548)
|+|++ ..|++++.||+|++||+.++..... ... ... ....+|...|
T Consensus 101 ~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 180 (447)
T 3dw8_B 101 WLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI 180 (447)
T ss_dssp ECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred EcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence 99998 8999999999999999976432100 000 000 1135788877
Q ss_pred EE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcce-------eeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCC
Q 000054 2325 SY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA-------SITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGG 2395 (2548)
Q Consensus 2325 ~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~-------sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DG 2395 (2548)
.+ |+|++++++++ .|+.|++||++.. ...+. .+.+|...|++++|+|++ ..+|++|+.||
T Consensus 181 ~~~~~~~~~~~l~s~----~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~------~~~l~s~~~dg 249 (447)
T 3dw8_B 181 NSISINSDYETYLSA----DDLRINLWHLEIT-DRSFNIVDIKPANMEELTEVITAAEFHPNS------CNTFVYSSSKG 249 (447)
T ss_dssp CEEEECTTSSEEEEE----CSSEEEEEETTEE-EEEEEEEECCCSSGGGCCCCEEEEEECSSC------TTEEEEEETTS
T ss_pred EEEEEcCCCCEEEEe----CCCeEEEEECCCC-CceeeeeecccccccccCcceEEEEECCCC------CcEEEEEeCCC
Confidence 64 89999999996 5999999999742 23333 366899999999999982 38999999999
Q ss_pred cEEEEeCCccccCce----eeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEE
Q 000054 2396 DVGIHDFRYIATGKT----KKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLT 2471 (2548)
Q Consensus 2396 tVrLWDLR~l~TGk~----l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaS 2471 (2548)
.|++||++. ++. +..+...... ..-..+.+|...|.+++|+|+|++|++
T Consensus 250 ~i~iwd~~~---~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~v~~~~~s~~g~~l~~ 302 (447)
T 3dw8_B 250 TIRLCDMRA---SALCDRHSKLFEEPEDP------------------------SNRSFFSEIISSISDVKFSHSGRYMMT 302 (447)
T ss_dssp CEEEEETTT---CSSSCTTCEEECCC-----------------------------CCHHHHHTTCEEEEEECTTSSEEEE
T ss_pred eEEEEECcC---CccccceeeEeccCCCc------------------------cccccccccCceEEEEEECCCCCEEEE
Confidence 999999653 332 2232000000 000012345669999999999999999
Q ss_pred EeCCCcEEEEECCC-CcEEEEecccccccccccCcccCCCCcee-----------ecEEEEEEcCCe--EEEEECCCcEE
Q 000054 2472 GSKDGDVKLWDAKA-AQLVYHWSKLHERHTFLQPSSRGFGGVVR-----------AGVTDIQVVSRG--FLSCGGDGSVK 2537 (2548)
Q Consensus 2472 GS~DGtIrIWDl~T-gell~tL~~~Hs~hsfl~~tl~GH~~~V~-----------a~VtsLafSPdG--LaSGS~DGtIr 2537 (2548)
++. |.|++||+++ ++++.++ .+|...+. ..+.+++|+|+| |++|+.||.|+
T Consensus 303 ~~~-~~v~iwd~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~ 367 (447)
T 3dw8_B 303 RDY-LSVKVWDLNMENRPVETY--------------QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFR 367 (447)
T ss_dssp EES-SEEEEEETTCCSSCSCCE--------------ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEE
T ss_pred eeC-CeEEEEeCCCCcccccee--------------eccccccccccccccccccccceEEEECCCCCEEEEeccCCEEE
Confidence 999 9999999997 7776655 34432111 012347999999 89999999999
Q ss_pred EEECCCCc
Q 000054 2538 LIQLEDYQ 2545 (2548)
Q Consensus 2538 IWDL~sg~ 2545 (2548)
+||+.++.
T Consensus 368 iwd~~~~~ 375 (447)
T 3dw8_B 368 MFDRNTKR 375 (447)
T ss_dssp EEETTTCC
T ss_pred EEEcCCCc
Confidence 99998764
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.6e-24 Score=258.96 Aligned_cols=234 Identities=21% Similarity=0.277 Sum_probs=192.9
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEE
Q 000054 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVV 2347 (2548)
Q Consensus 2270 H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVr 2347 (2548)
|.+.|++++|+|++++|++|+.||+|++||+.++... ..+..|...|. +|+|+++++++++ .|+.|+
T Consensus 54 H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~--------~~~~~~~~~v~~~~~s~~~~~l~s~~---~d~~v~ 122 (340)
T 1got_B 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV--------HAIPLRSSWVMTCAYAPSGNYVACGG---LDNICS 122 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE--------EEEECSSSCEEEEEECTTSSEEEEEE---TTCEEE
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcc--------eEeecCCccEEEEEECCCCCEEEEEe---CCCeEE
Confidence 6699999999999999999999999999999877543 23566777776 4899999999997 899999
Q ss_pred EEECCCCCC--CcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccc
Q 000054 2348 VWDTLAPPT--SSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINT 2425 (2548)
Q Consensus 2348 IWDl~t~~~--k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~ 2425 (2548)
+||+..... .....+.+|.+.|.++.|++++ .+++|+.||+|++|| +.+++.+..+.. + ....
T Consensus 123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--------~l~s~s~d~~i~~wd---~~~~~~~~~~~~---h-~~~v 187 (340)
T 1got_B 123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--------QIVTSSGDTTCALWD---IETGQQTTTFTG---H-TGDV 187 (340)
T ss_dssp EEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--------EEEEEETTSCEEEEE---TTTTEEEEEECC---C-SSCE
T ss_pred EEECccCCCcceeEEEecCCCccEEEEEECCCC--------cEEEEECCCcEEEEE---CCCCcEEEEEcC---C-CCce
Confidence 999976322 2456778999999999999874 699999999999999 556777766621 1 2235
Q ss_pred cccccCCCCCC--ccCCCCCceEEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccc
Q 000054 2426 CAHADAQTGSG--SKPGDQNGMLWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKL 2495 (2548)
Q Consensus 2426 ~~vafSpdGk~--v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~ 2495 (2548)
..+.++|++++ .++.|+.+++|++ +.+|...|++++|+|++++|++|+.||+|++||+++++.+..+.
T Consensus 188 ~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-- 265 (340)
T 1got_B 188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS-- 265 (340)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC--
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEc--
Confidence 67789999987 6678999999995 35799999999999999999999999999999999998887662
Q ss_pred ccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2496 HERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2496 Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
| .++. ..|++++|+|+| |++|+.||+|++||+.++.
T Consensus 266 ~----------~~~~----~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 303 (340)
T 1got_B 266 H----------DNII----CGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303 (340)
T ss_dssp C----------TTCC----SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred c----------CCcc----cceEEEEECCCCCEEEEECCCCeEEEEEcccCc
Confidence 1 1111 347888999999 8899999999999987653
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-23 Score=255.83 Aligned_cols=229 Identities=15% Similarity=0.164 Sum_probs=184.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|.+++|+|++.++++|+.|++|++||+.+++.+..+.. |.+.|.+++|+|++++|++|+.||+|++||+.
T Consensus 79 V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~----------h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~ 148 (343)
T 2xzm_R 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVG----------HQSEVYSVAFSPDNRQILSAGAEREIKLWNIL 148 (343)
T ss_dssp EEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEEC----------CCSCEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred eEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcC----------CCCcEEEEEECCCCCEEEEEcCCCEEEEEecc
Confidence 68999999999999999999999999999988877743 55899999999999999999999999999997
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCC----------CEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSG----------SVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA 2369 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdG----------slLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V 2369 (2548)
...... .....+|...|.+ ++|++ .++++++ .|+.|++||.. ......+.+|...|
T Consensus 149 ~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~---~d~~i~iwd~~---~~~~~~~~~h~~~v 216 (343)
T 2xzm_R 149 GECKFS------SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG---WDGRLKVWNTN---FQIRYTFKAHESNV 216 (343)
T ss_dssp SCEEEE------CCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE---TTSEEEEEETT---TEEEEEEECCSSCE
T ss_pred CCceee------eecccCCCceeeeeeeccccccccccCCCCCEEEEEc---CCCEEEEEcCC---CceeEEEcCccccc
Confidence 432111 1113367666664 77776 7899986 89999999953 45677888999999
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEE
Q 000054 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWY 2448 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwd 2448 (2548)
++++|+|+ +++|++|+.||.|++||++. .......+.. ......++|+|++.+ .++.++.+++|+
T Consensus 217 ~~~~~s~~-------g~~l~sgs~dg~v~iwd~~~--~~~~~~~~~~-----~~~v~~v~~sp~~~~la~~~d~~v~iw~ 282 (343)
T 2xzm_R 217 NHLSISPN-------GKYIATGGKDKKLLIWDILN--LTYPQREFDA-----GSTINQIAFNPKLQWVAVGTDQGVKIFN 282 (343)
T ss_dssp EEEEECTT-------SSEEEEEETTCEEEEEESSC--CSSCSEEEEC-----SSCEEEEEECSSSCEEEEEESSCEEEEE
T ss_pred eEEEECCC-------CCEEEEEcCCCeEEEEECCC--CcccceeecC-----CCcEEEEEECCCCCEEEEECCCCEEEEE
Confidence 99999998 78999999999999999742 2222222211 112567889999987 455677899998
Q ss_pred ccc---------------------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 000054 2449 IPK---------------------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAA 2486 (2548)
Q Consensus 2449 i~~---------------------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tg 2486 (2548)
+.. +|...|.+++|+|+|++|++|+.||+|++||+.++
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 283 LMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred eCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 521 57788999999999999999999999999998765
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-24 Score=284.48 Aligned_cols=245 Identities=20% Similarity=0.327 Sum_probs=197.2
Q ss_pred cCCeE--EEEEEEcCCC-CEEEEEECCCeEEEEEcCCCcee--EEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC
Q 000054 2217 VENIS--TRAFSSHPLR-PFFLVGSSNTHIYLWEFGKDKAT--ATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL 2291 (2548)
Q Consensus 2217 l~gV~--V~~VsfSPdG-~~LASGS~DGsVrLWDl~tg~~l--~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~ 2291 (2548)
+.+|. |.+++|+|++ ++|+||+.||+|++||+.++... .....+ .+|.+.|++++|+|++++|++|+.
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~-------~~h~~~v~~v~~s~~g~~l~sgs~ 450 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL-------TGHSHFVEDVVLSSDGQFALSGSW 450 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEE-------ECCSSCEEEEEECTTSSEEEEEET
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccccccccee-------cCCCCcEEEEEECCCCCEEEEEeC
Confidence 44444 7999999875 79999999999999999864321 111111 236689999999999999999999
Q ss_pred CCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCccee----eecc
Q 000054 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRAS----ITCH 2365 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~s----l~gH 2365 (2548)
||+|++||+.++... ..+.+|...|.+ |+|+++.+++++ .|++|++||... .+... ..+|
T Consensus 451 Dg~v~vwd~~~~~~~--------~~~~~h~~~v~~~~~s~~~~~l~s~s---~D~~i~iwd~~~---~~~~~~~~~~~~h 516 (694)
T 3dm0_A 451 DGELRLWDLAAGVST--------RRFVGHTKDVLSVAFSLDNRQIVSAS---RDRTIKLWNTLG---ECKYTISEGGEGH 516 (694)
T ss_dssp TSEEEEEETTTTEEE--------EEEECCSSCEEEEEECTTSSCEEEEE---TTSCEEEECTTS---CEEEEECSSTTSC
T ss_pred CCcEEEEECCCCcce--------eEEeCCCCCEEEEEEeCCCCEEEEEe---CCCEEEEEECCC---CcceeeccCCCCC
Confidence 999999999887532 346789988874 899999999986 899999999864 22222 2478
Q ss_pred CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCce
Q 000054 2366 EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGM 2445 (2548)
Q Consensus 2366 s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~ 2445 (2548)
...|.+++|+|+. ....+++|+.||+|++||++ +++....+
T Consensus 517 ~~~v~~~~~~~~~-----~~~~l~s~s~d~~v~vwd~~---~~~~~~~~------------------------------- 557 (694)
T 3dm0_A 517 RDWVSCVRFSPNT-----LQPTIVSASWDKTVKVWNLS---NCKLRSTL------------------------------- 557 (694)
T ss_dssp SSCEEEEEECSCS-----SSCEEEEEETTSCEEEEETT---TCCEEEEE-------------------------------
T ss_pred CCcEEEEEEeCCC-----CcceEEEEeCCCeEEEEECC---CCcEEEEE-------------------------------
Confidence 9999999999983 13589999999999999954 45555554
Q ss_pred EEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCC
Q 000054 2446 LWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSR 2525 (2548)
Q Consensus 2446 Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPd 2525 (2548)
.+|.+.|++++|+|++++|++|+.||+|++||+++++.+..+ ..+ ..|.+++|+|+
T Consensus 558 -----~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~--------------~~~-----~~v~~~~~sp~ 613 (694)
T 3dm0_A 558 -----AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL--------------EAN-----SVIHALCFSPN 613 (694)
T ss_dssp -----CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC--------------BCS-----SCEEEEEECSS
T ss_pred -----cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe--------------cCC-----CcEEEEEEcCC
Confidence 789999999999999999999999999999999999988655 222 23678899999
Q ss_pred e-EEEEECCCcEEEEECCCCc
Q 000054 2526 G-FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2526 G-LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+ +++++.|+.|++||+.++.
T Consensus 614 ~~~l~~~~~~~i~iwd~~~~~ 634 (694)
T 3dm0_A 614 RYWLCAATEHGIKIWDLESKS 634 (694)
T ss_dssp SSEEEEEETTEEEEEETTTTE
T ss_pred CcEEEEEcCCCEEEEECCCCC
Confidence 9 7777778889999998764
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8.5e-24 Score=251.53 Aligned_cols=275 Identities=12% Similarity=0.160 Sum_probs=215.5
Q ss_pred EEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
.+.+++|+|+|++++++..++.+.+|+.......... ..|.+.|++++|+|+++++++++ ||.|++||+
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~ 79 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINT----------LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDI 79 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEE----------ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEET
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccCCcccccee----------ccCCCceEEEEEecCCcEEEEcC-CCeEEEEEC
Confidence 3688999999999999887777766654433222221 12568999999999999999999 999999999
Q ss_pred CCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCC
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
.+++..... ......+|...|.+ ++|+++++++++ .|+.|++||+..+.......+..|...|.+++|+|+
T Consensus 80 ~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~- 152 (337)
T 1gxr_A 80 SHPGNKSPV---SQLDCLNRDNYIRSCKLLPDGCTLIVGG---EASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD- 152 (337)
T ss_dssp TSTTCCSCS---EEEECSCTTSBEEEEEECTTSSEEEEEE---SSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTT-
T ss_pred CCCCceeee---ecccccCCCCcEEEEEEcCCCCEEEEEc---CCCcEEEEECCCCCcceeeecccCCCceEEEEECCC-
Confidence 876532211 11112367777764 899999999986 899999999987433356778889999999999998
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEccc-----
Q 000054 2379 LGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIPK----- 2451 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~~----- 2451 (2548)
++++++++.||.|++||+ .+++.+..+.. .......+.++|++.. +++.++.+++|++..
T Consensus 153 ------~~~l~~~~~dg~v~~~d~---~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~ 219 (337)
T 1gxr_A 153 ------SKVCFSCCSDGNIAVWDL---HNQTLVRQFQG----HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ 219 (337)
T ss_dssp ------SSEEEEEETTSCEEEEET---TTTEEEEEECC----CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred ------CCEEEEEeCCCcEEEEeC---CCCceeeeeec----ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEe
Confidence 789999999999999994 45666666521 1223567789999887 667788999999643
Q ss_pred --CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--E
Q 000054 2452 --AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--F 2527 (2548)
Q Consensus 2452 --gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--L 2527 (2548)
.|...+.+++|+|+++++++++.||.|++||+++++... + .+|.+ .|.+++|+|++ +
T Consensus 220 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~--------------~~~~~----~v~~~~~~~~~~~l 280 (337)
T 1gxr_A 220 QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-L--------------HLHES----CVLSLKFAYCGKWF 280 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-E--------------CCCSS----CEEEEEECTTSSEE
T ss_pred eecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-E--------------cCCcc----ceeEEEECCCCCEE
Confidence 477899999999999999999999999999999887643 2 45654 45778999999 8
Q ss_pred EEEECCCcEEEEECCCCc
Q 000054 2528 LSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2528 aSGS~DGtIrIWDL~sg~ 2545 (2548)
++++.||.|++|++.++.
T Consensus 281 ~~~~~dg~i~~~~~~~~~ 298 (337)
T 1gxr_A 281 VSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp EEEETTSEEEEEETTTCC
T ss_pred EEecCCCcEEEEECCCCe
Confidence 899999999999998764
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.6e-25 Score=270.98 Aligned_cols=293 Identities=14% Similarity=0.118 Sum_probs=214.0
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCC----CceeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCCcEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGK----DKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~t----g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DGtVr 2296 (2548)
+.+++|+|++++|++|+.||.|++||+.+ .+.+..+. .|.+.|++++|+|+ +++|++|+.||+|+
T Consensus 70 v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 139 (416)
T 2pm9_A 70 FNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFS----------NHSSSVKTVKFNAKQDNVLASGGNNGEIF 139 (416)
T ss_dssp EEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECC----------CSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred eEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhcc----------CCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence 68999999999999999999999999987 23444432 35689999999998 89999999999999
Q ss_pred EEEcCCCcccccc-cCccceeccCCcccEE--EEcCC-CCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc------C
Q 000054 2297 TWQLEVGGRSNVR-PMESCLCFSSHAMDVS--YITSS-GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH------E 2366 (2548)
Q Consensus 2297 VWDl~tgk~i~i~-p~~s~~t~~gH~~~V~--afSpd-GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH------s 2366 (2548)
+||+++++..... .........+|...|. +|+|+ +.++++++ .|+.|++||++. .+.+..+..| .
T Consensus 140 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~v~iwd~~~--~~~~~~~~~~~~~~~~~ 214 (416)
T 2pm9_A 140 IWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAG---SSNFASIWDLKA--KKEVIHLSYTSPNSGIK 214 (416)
T ss_dssp BCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEES---SSSCEEEEETTT--TEEEEEECCCCCSSCCC
T ss_pred EEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEc---CCCCEEEEECCC--CCcceEEeccccccccC
Confidence 9999877511000 0001122456777665 48888 78889886 899999999986 5666777665 7
Q ss_pred CCeEEEEEccCCCCCCCCCCEEEEEeCCC---cEEEEeCCccccCceeeeecCCCCCCCccccccccCC-CCCC--ccCC
Q 000054 2367 GGARSISVFDNDLGSGSVSPLIVTGGKGG---DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQ-TGSG--SKPG 2440 (2548)
Q Consensus 2367 ~~VtSLafsP~dlg~gs~g~lLVSGS~DG---tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSp-dGk~--v~s~ 2440 (2548)
..|.+++|+|++ ..++++++.|| .|++||++.. ...+..+. .........+.++| ++.+ +++.
T Consensus 215 ~~v~~~~~~~~~------~~~l~~~~~d~~~~~i~~~d~~~~--~~~~~~~~---~~~~~~v~~~~~s~~~~~~l~s~~~ 283 (416)
T 2pm9_A 215 QQLSVVEWHPKN------STRVATATGSDNDPSILIWDLRNA--NTPLQTLN---QGHQKGILSLDWCHQDEHLLLSSGR 283 (416)
T ss_dssp CCEEEEEECSSC------TTEEEEEECCSSSCCCCEEETTST--TSCSBCCC---SCCSSCEEEEEECSSCSSCEEEEES
T ss_pred CceEEEEECCCC------CCEEEEEECCCCCceEEEEeCCCC--CCCcEEee---cCccCceeEEEeCCCCCCeEEEEeC
Confidence 899999999984 56999999999 9999996531 12322221 01123356778888 7777 6677
Q ss_pred CCCceEEEc--------ccCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEecc-------------c---
Q 000054 2441 DQNGMLWYI--------PKAHLGSVTRISTVPNT-SLFLTGSKDGDVKLWDAKAAQLVYHWSK-------------L--- 2495 (2548)
Q Consensus 2441 D~sv~Iwdi--------~~gH~~~VtsLafSPdG-~~LaSGS~DGtIrIWDl~Tgell~tL~~-------------~--- 2495 (2548)
|+.+++|++ +.+|...|++++|+|++ .+|++++.||.|++||+.+++....... .
T Consensus 284 dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (416)
T 2pm9_A 284 DNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVS 363 (416)
T ss_dssp SSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-------------------
T ss_pred CCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccc
Confidence 889999985 34789999999999999 8999999999999999987654321100 0
Q ss_pred ---ccccc--cccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000054 2496 ---HERHT--FLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2496 ---Hs~hs--fl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
|.... +-.+....|.. .+.+++|+|+| |++++.||+|++|++.++
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 364 REESKEKPSVFHLQAPTWYGE----PSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ---CCSCCCSSCCCCCSTTCC----CSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccccccccCCccccC----CccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 00000 00011112333 34566999999 779999999999999875
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=252.39 Aligned_cols=263 Identities=16% Similarity=0.182 Sum_probs=200.9
Q ss_pred EEEEEEcCC---CCEEEEEECCCeEEEEEcCC-Ccee-EEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 000054 2222 TRAFSSHPL---RPFFLVGSSNTHIYLWEFGK-DKAT-ATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPd---G~~LASGS~DGsVrLWDl~t-g~~l-~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVr 2296 (2548)
|.+++|+|+ |++|++|+.||.|++||+.+ +..+ ..+. .|.+.|++++|+|++++|++|+.||.|+
T Consensus 42 v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~l~s~~~dg~v~ 111 (368)
T 3mmy_A 42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ----------MHTGPVLDVCWSDDGSKVFTASCDKTAK 111 (368)
T ss_dssp EEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE----------ECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec----------cccCCEEEEEECcCCCEEEEEcCCCcEE
Confidence 799999999 69999999999999999997 5444 3443 2568999999999999999999999999
Q ss_pred EEEcCCCcccccccCccceeccCCcccEEE--E--cCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEE
Q 000054 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSY--I--TSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSI 2372 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--f--SpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSL 2372 (2548)
+||+++++... ..+|...|.+ | +++++++++++ .||.|++||++. .+.+..+..|. .+.++
T Consensus 112 iwd~~~~~~~~---------~~~~~~~v~~~~~~~~~~~~~l~~~~---~dg~i~vwd~~~--~~~~~~~~~~~-~~~~~ 176 (368)
T 3mmy_A 112 MWDLSSNQAIQ---------IAQHDAPVKTIHWIKAPNYSCVMTGS---WDKTLKFWDTRS--SNPMMVLQLPE-RCYCA 176 (368)
T ss_dssp EEETTTTEEEE---------EEECSSCEEEEEEEECSSCEEEEEEE---TTSEEEEECSSC--SSCSEEEECSS-CEEEE
T ss_pred EEEcCCCCcee---------eccccCceEEEEEEeCCCCCEEEEcc---CCCcEEEEECCC--CcEEEEEecCC-CceEE
Confidence 99999775332 3457777764 6 88999999986 899999999986 56777777654 67777
Q ss_pred EEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccccc------CCCCCCccCCCCCceE
Q 000054 2373 SVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHAD------AQTGSGSKPGDQNGML 2446 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vaf------SpdGk~v~s~D~sv~I 2446 (2548)
.+.+. .+++++.|+.+++||++. ............. .....+.+ .+++..+++.++.+++
T Consensus 177 ~~~~~---------~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i 242 (368)
T 3mmy_A 177 DVIYP---------MAVVATAERGLIVYQLEN---QPSEFRRIESPLK--HQHRCVAIFKDKQNKPTGFALGSIEGRVAI 242 (368)
T ss_dssp EEETT---------EEEEEEGGGCEEEEECSS---SCEEEEECCCSCS--SCEEEEEEEECTTSCEEEEEEEETTSEEEE
T ss_pred EecCC---------eeEEEeCCCcEEEEEecc---ccchhhhcccccc--CCCceEEEcccCCCCCCeEEEecCCCcEEE
Confidence 76655 889999999999999753 2221111111111 11112222 2222347788899999
Q ss_pred EEcc-----------cCCCC------------CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccccccccccc
Q 000054 2447 WYIP-----------KAHLG------------SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQ 2503 (2548)
Q Consensus 2447 wdi~-----------~gH~~------------~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~ 2503 (2548)
|++. .+|.. .|++++|+|++++|++|+.||.|++||+.+++++.++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~----------- 311 (368)
T 3mmy_A 243 HYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS----------- 311 (368)
T ss_dssp EESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC-----------
T ss_pred EecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe-----------
Confidence 9853 34554 7999999999999999999999999999999998766
Q ss_pred CcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEEC
Q 000054 2504 PSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2504 ~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL 2541 (2548)
.+|.+ .|.+++|+|+| |++|+.|+..+.|++
T Consensus 312 ---~~~~~----~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 312 ---EQLDQ----PISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp ---CCCSS----CEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred ---cCCCC----CceEEEECCCCCeEEEEecccccccccc
Confidence 56664 45778999999 999999986665554
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-24 Score=268.65 Aligned_cols=262 Identities=17% Similarity=0.222 Sum_probs=199.9
Q ss_pred EEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcc
Q 000054 2243 IYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAM 2322 (2548)
Q Consensus 2243 VrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~ 2322 (2548)
+..|+..+.....++. +|.+.|++++|+|++++|++|+.||+|++||+.+++.. ..+..|..
T Consensus 48 ~~~~~~~~~~~~~~l~----------gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~--------~~~~~h~~ 109 (380)
T 3iz6_a 48 AVSFNPTDLVCCRTLQ----------GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKT--------HAIKLHCP 109 (380)
T ss_dssp CCCCCCCCCEEEEEEC----------CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE--------EEEECCCT
T ss_pred ccccccceeEEeeccc----------ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccc--------eEEecCCC
Confidence 3345555555555553 35699999999999999999999999999999887543 23567777
Q ss_pred cEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCC-----CCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCC
Q 000054 2323 DVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPP-----TSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGG 2395 (2548)
Q Consensus 2323 ~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~-----~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DG 2395 (2548)
.|. +|+|+|+++++++ .|+.|++||+.... ......+.+|.+.|.++.|.|++ +..|++|+.||
T Consensus 110 ~v~~~~~s~~g~~las~~---~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~------~~~l~s~s~D~ 180 (380)
T 3iz6_a 110 WVMECAFAPNGQSVACGG---LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ------ETRLITGSGDQ 180 (380)
T ss_dssp TCCCCEECTTSSEEEECC---SSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS------SSCEEEECTTS
T ss_pred CEEEEEECCCCCEEEEee---CCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCC------CCEEEEECCCC
Confidence 775 5999999999986 89999999986421 12356788999999999999984 66899999999
Q ss_pred cEEEEeCCccccCceeeeecCCC-CCCCccccccccCC-CCCC--ccCCCCCceEEEcc---------cCCCCCEEEEEE
Q 000054 2396 DVGIHDFRYIATGKTKKHKHSDR-GGSSINTCAHADAQ-TGSG--SKPGDQNGMLWYIP---------KAHLGSVTRIST 2462 (2548)
Q Consensus 2396 tVrLWDLR~l~TGk~l~tl~~~~-~~s~~~~~~vafSp-dGk~--v~s~D~sv~Iwdi~---------~gH~~~VtsLaf 2462 (2548)
+|++|| +.+++.+..+.... .........+.+++ ++.+ .++.|+.+++||+. .+|.+.|++++|
T Consensus 181 ~i~~wd---~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~ 257 (380)
T 3iz6_a 181 TCVLWD---VTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKF 257 (380)
T ss_dssp CEEEEC---TTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEE
T ss_pred cEEEEE---cCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEE
Confidence 999999 55677766552111 11122233445544 6665 67889999999953 479999999999
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEE
Q 000054 2463 VPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2463 SPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWD 2540 (2548)
+|++++|++|+.||+|++||+++++.+..+...... ...+. ..|++++|+|+| +++|+.||.|++||
T Consensus 258 ~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~-------~~~~~----~~v~~~~~s~~g~~l~~g~~dg~i~vwd 326 (380)
T 3iz6_a 258 FPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDR-------NDNEL----PIVTSVAFSISGRLLFAGYSNGDCYVWD 326 (380)
T ss_dssp CTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSS-------SCCSS----CSCSEEEECSSSSEEEEECTTSCEEEEE
T ss_pred ecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccc-------ccccc----CceEEEEECCCCCEEEEEECCCCEEEEE
Confidence 999999999999999999999999999877321111 01121 236778999999 88999999999999
Q ss_pred CCCCc
Q 000054 2541 LEDYQ 2545 (2548)
Q Consensus 2541 L~sg~ 2545 (2548)
+.++.
T Consensus 327 ~~~~~ 331 (380)
T 3iz6_a 327 TLLAE 331 (380)
T ss_dssp TTTCC
T ss_pred CCCCc
Confidence 87653
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-23 Score=253.62 Aligned_cols=226 Identities=18% Similarity=0.303 Sum_probs=186.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc------eeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK------ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTV 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~------~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtV 2295 (2548)
+.+++|+|+|.++++|+.|+.+++|++.... ....+ ..|.+.|.+++|+|++..|++|+.||+|
T Consensus 109 v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~----------~~h~~~v~~~~~~~~~~~l~t~s~D~~v 178 (354)
T 2pbi_B 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSV----------AMHTNYLSACSFTNSDMQILTASGDGTC 178 (354)
T ss_dssp CCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEE----------EECSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred EEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceee----------eccCCcEEEEEEeCCCCEEEEEeCCCcE
Confidence 4788999999999999999999999987532 12222 2366899999999999999999999999
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEEE--EcC--CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS--SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp--dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
++||+++++.. ..+.+|...|.+ ++| +|+++++++ .||.|++||+++ ++++..+.+|...|++
T Consensus 179 ~lwd~~~~~~~--------~~~~~h~~~v~~~~~~~~~~g~~l~sgs---~Dg~v~~wd~~~--~~~~~~~~~h~~~v~~ 245 (354)
T 2pbi_B 179 ALWDVESGQLL--------QSFHGHGADVLCLDLAPSETGNTFVSGG---CDKKAMVWDMRS--GQCVQAFETHESDVNS 245 (354)
T ss_dssp EEEETTTCCEE--------EEEECCSSCEEEEEECCCSSCCEEEEEE---TTSCEEEEETTT--CCEEEEECCCSSCEEE
T ss_pred EEEeCCCCeEE--------EEEcCCCCCeEEEEEEeCCCCCEEEEEe---CCCeEEEEECCC--CcEEEEecCCCCCeEE
Confidence 99999987533 347788888864 555 578999986 899999999987 6788899999999999
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI 2449 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi 2449 (2548)
++|+|+ +.+|++|+.||+|++||++ +++.+..+.. .........+.|+|+|.+ ++..|+.+++|++
T Consensus 246 v~~~p~-------~~~l~s~s~D~~v~lwd~~---~~~~~~~~~~--~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~ 313 (354)
T 2pbi_B 246 VRYYPS-------GDAFASGSDDATCRLYDLR---ADREVAIYSK--ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV 313 (354)
T ss_dssp EEECTT-------SSEEEEEETTSCEEEEETT---TTEEEEEECC--TTCCSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEEeCC-------CCEEEEEeCCCeEEEEECC---CCcEEEEEcC--CCcccceeEEEEeCCCCEEEEEECCCcEEEEEC
Confidence 999998 7899999999999999965 3444444311 111223456789999998 6677889999995
Q ss_pred --------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000054 2450 --------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWD 2482 (2548)
Q Consensus 2450 --------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWD 2482 (2548)
+.+|.+.|++++|+|+|++|++|+.||+|+||+
T Consensus 314 ~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 314 LKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 347999999999999999999999999999996
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.5e-24 Score=262.16 Aligned_cols=282 Identities=15% Similarity=0.175 Sum_probs=212.4
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
....|+|++++|++|+.||.|++||+.+++....+. .|.+.|++++|+|++++|++|+.||+|++||+++
T Consensus 101 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~ 170 (420)
T 3vl1_A 101 AVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ----------AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD 170 (420)
T ss_dssp EEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT----------SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc----------cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence 445678999999999999999999999887765542 3568999999999999999999999999999997
Q ss_pred CcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeec---cCCCeEEEEEccC
Q 000054 2303 GGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC---HEGGARSISVFDN 2377 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g---Hs~~VtSLafsP~ 2377 (2548)
++.. ..+.+|...|.+ |+|+++++++++ .|+.|++||+++ ++.+..+.. |...|.++.+.+.
T Consensus 171 ~~~~--------~~~~~h~~~v~~~~~~~~~~~l~s~~---~d~~v~iwd~~~--~~~~~~~~~~~~~~~~v~~~~~~~~ 237 (420)
T 3vl1_A 171 GSNP--------RTLIGHRATVTDIAIIDRGRNVLSAS---LDGTIRLWECGT--GTTIHTFNRKENPHDGVNSIALFVG 237 (420)
T ss_dssp CCCC--------EEEECCSSCEEEEEEETTTTEEEEEE---TTSCEEEEETTT--TEEEEEECBTTBTTCCEEEEEEEEC
T ss_pred CcCc--------eEEcCCCCcEEEEEEcCCCCEEEEEc---CCCcEEEeECCC--CceeEEeecCCCCCCCccEEEEecC
Confidence 7533 346788888874 899999999986 899999999986 566666664 5667777777543
Q ss_pred C--------------CCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCC-C--ccCC
Q 000054 2378 D--------------LGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGS-G--SKPG 2440 (2548)
Q Consensus 2378 d--------------lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk-~--v~s~ 2440 (2548)
. +...+.+.++++|+.||.|++||++ +++.+..+.. ........+.++|++. + +++.
T Consensus 238 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~g~~ 311 (420)
T 3vl1_A 238 TDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVF---SKEQTIQLPS---KFTCSCNSLTVDGNNANYIYAGYE 311 (420)
T ss_dssp CCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETT---TCCEEEEECC---TTSSCEEEEEECSSCTTEEEEEET
T ss_pred CcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECC---CCceeEEccc---ccCCCceeEEEeCCCCCEEEEEeC
Confidence 1 0011237799999999999999954 5665555421 1223456788999988 4 6778
Q ss_pred CCCceEEEccc---------C-CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCC
Q 000054 2441 DQNGMLWYIPK---------A-HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFG 2510 (2548)
Q Consensus 2441 D~sv~Iwdi~~---------g-H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~ 2510 (2548)
++.+++|++.. + |...|.++.+ |++++|++|+.||.|++||+.+.+....+... .... .+.+|.
T Consensus 312 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~-~~~~----~~~~~~ 385 (420)
T 3vl1_A 312 NGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEF-ETPT----FLVSND 385 (420)
T ss_dssp TSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECT-TSCE----EECCSS
T ss_pred CCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceec-cCcc----EEccCC
Confidence 89999999642 2 6778888855 57889999999999999999874322111000 1111 134565
Q ss_pred CceeecEEEEEEcCCe-----EEEEECCCcEEEEECCC
Q 000054 2511 GVVRAGVTDIQVVSRG-----FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2511 ~~V~a~VtsLafSPdG-----LaSGS~DGtIrIWDL~s 2543 (2548)
+. |.+++|+|++ ++++|.+|.+++|++++
T Consensus 386 ~~----v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 386 DA----VSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CC----CCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred cc----eEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 44 4567899987 88999999999999976
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=264.53 Aligned_cols=260 Identities=10% Similarity=0.028 Sum_probs=186.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCC--ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKD--KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg--~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
|.+++|+|+|++|++|+.||.|++||+.++ +....+ .+|.+.|++++|+|++++|++|+.||+|++||
T Consensus 14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~----------~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTF----------SDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp CSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCB----------CCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred EEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEE----------ecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 688999999999999999999999999987 444333 23668999999999999999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCC-CCcceeeec-cCCCeEEEEEc
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPP-TSSRASITC-HEGGARSISVF 2375 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~-~k~v~sl~g-Hs~~VtSLafs 2375 (2548)
+.+++.. .....+.+|...|.+ |+|+++++++++ .|+.|++||++... ......+.+ |.+.|++++|+
T Consensus 84 ~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~ 155 (377)
T 3dwl_C 84 KRPDGTW-----KQTLVLLRLNRAATFVRWSPNEDKFAVGS---GARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWH 155 (377)
T ss_dssp -----CC-----CCEEECCCCSSCEEEEECCTTSSCCEEEE---SSSCEEECCC-----CCCCEEECSSCCSCEEEEEEC
T ss_pred cCCCCce-----eeeeEecccCCceEEEEECCCCCEEEEEe---cCCeEEEEEECCcccceeeeEeecccCCCeEEEEEc
Confidence 9877511 122346678888875 889999999986 89999999998632 114667777 99999999999
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCC
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG 2455 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~ 2455 (2548)
|+ +.+|++|+.||.|++||++. +...... .....+..-....+...+ +|.+
T Consensus 156 ~~-------~~~l~~~~~d~~i~iwd~~~---~~~~~~~------------------~~~~~~~~~~~~~~~~~~-~~~~ 206 (377)
T 3dwl_C 156 PN-------NVLLAAGCADRKAYVLSAYV---RDVDAKP------------------EASVWGSRLPFNTVCAEY-PSGG 206 (377)
T ss_dssp TT-------SSEEEEEESSSCEEEEEECC---SSCC-CC------------------CSCSSCSCCCEEEEEECC-CCSS
T ss_pred CC-------CCEEEEEeCCCEEEEEEEEe---cccCCCc------------------cccccccccchhhhhhcc-cCCc
Confidence 98 78999999999999999642 1111000 000000001123334444 8999
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECC
Q 000054 2456 SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGD 2533 (2548)
Q Consensus 2456 ~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~D 2533 (2548)
.|++++|+|++++|++|+.||.|++||+.+++..... ...+.+|... |.+++|+|+| |++|+.
T Consensus 207 ~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~----------~~~~~~~~~~----v~~~~~s~~~~~l~~~~~- 271 (377)
T 3dwl_C 207 WVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA----------LITVKLSQLP----LRSLLWANESAIVAAGYN- 271 (377)
T ss_dssp SEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE----------CCCEECSSSC----EEEEEEEETTEEEEEESS-
T ss_pred eEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee----------eEeecCCCCc----eEEEEEcCCCCEEEEEcC-
Confidence 9999999999999999999999999999988762111 0123677654 5677999999 556655
Q ss_pred CcEEEEECCC
Q 000054 2534 GSVKLIQLED 2543 (2548)
Q Consensus 2534 GtIrIWDL~s 2543 (2548)
+.+.+|+...
T Consensus 272 ~~~~~~~~~~ 281 (377)
T 3dwl_C 272 YSPILLQGNE 281 (377)
T ss_dssp SSEEEECCCC
T ss_pred CcEEEEEeCC
Confidence 4455777653
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-23 Score=253.63 Aligned_cols=284 Identities=14% Similarity=0.149 Sum_probs=194.5
Q ss_pred EEEEEEcC-CCCEEEEEECCCeEEEEEcCCCceeEEEeccCC---CCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEE
Q 000054 2222 TRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPA---ANVPPPYALASISALQFDH-YGHRFASAALDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSP-dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~g---hs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVr 2296 (2548)
+.+++|+| ++++|++|+.||.|++||+.+++....+..... ......+|.+.|.+++|+| ++.+|++++.||.|+
T Consensus 46 v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~ 125 (408)
T 4a11_B 46 INTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLK 125 (408)
T ss_dssp EEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEE
T ss_pred EEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEE
Confidence 79999999 999999999999999999998765444321100 0001234779999999999 788999999999999
Q ss_pred EEEcCCCcccccccCccceeccCCcccEE--EEcC---CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITS---SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSp---dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
+||+.+++.... +. +...+. .+.+ ++.++++++ .|+.|++||++. .+.+..+.+|.+.|.+
T Consensus 126 iwd~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~d~~~--~~~~~~~~~~~~~v~~ 191 (408)
T 4a11_B 126 VWDTNTLQTADV--------FN-FEETVYSHHMSPVSTKHCLVAVGT---RGPKVQLCDLKS--GSCSHILQGHRQEILA 191 (408)
T ss_dssp EEETTTTEEEEE--------EE-CSSCEEEEEECSSCSSCCEEEEEE---SSSSEEEEESSS--SCCCEEECCCCSCEEE
T ss_pred EeeCCCCcccee--------cc-CCCceeeeEeecCCCCCcEEEEEc---CCCeEEEEeCCC--cceeeeecCCCCcEEE
Confidence 999998754322 11 233333 2444 556899886 899999999986 6778889999999999
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCC-----------CCCCccccccccCCCCCC--cc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDR-----------GGSSINTCAHADAQTGSG--SK 2438 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~-----------~~s~~~~~~vafSpdGk~--v~ 2438 (2548)
++|+|++ ..++++|+.||.|++||++... ..+..+.... .........+.++|+|.+ ++
T Consensus 192 ~~~~~~~------~~ll~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 263 (408)
T 4a11_B 192 VSWSPRY------DYILATASADSRVKLWDVRRAS--GCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV 263 (408)
T ss_dssp EEECSSC------TTEEEEEETTSCEEEEETTCSS--CCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE
T ss_pred EEECCCC------CcEEEEEcCCCcEEEEECCCCC--cccccccccccccceeeccccccccCceeEEEEcCCCCEEEEe
Confidence 9999983 3479999999999999976321 1222221000 111222344566666665 44
Q ss_pred CCCCCceEEEcccCCC-------------CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCc
Q 000054 2439 PGDQNGMLWYIPKAHL-------------GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPS 2505 (2548)
Q Consensus 2439 s~D~sv~Iwdi~~gH~-------------~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~t 2505 (2548)
+.++.+++|++..+.. ..+........+..+++++.||.|++||+.+++.+..+
T Consensus 264 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~------------- 330 (408)
T 4a11_B 264 GTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML------------- 330 (408)
T ss_dssp ETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE-------------
T ss_pred cCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee-------------
Confidence 5566667776533210 11111111223344555566677777777777766655
Q ss_pred ccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2506 SRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2506 l~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.+|.+ .|++++|+|++ |++|+.||.|++||+.++.
T Consensus 331 -~~~~~----~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 331 -KGHYK----TVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp -CCCSS----CEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred -ccCCC----eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 56764 45678999999 8999999999999998764
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=253.38 Aligned_cols=257 Identities=11% Similarity=0.099 Sum_probs=198.1
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+|++++|++|+.||.|++||+.+++....+.. ..|...|.+++|+|++++|++|+.||.|++||++
T Consensus 55 v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~ 126 (372)
T 1k8k_C 55 VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVI--------LRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 126 (372)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEEC--------CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEE
T ss_pred ccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEe--------ecCCCceeEEEECCCCCEEEEEeCCCEEEEEEec
Confidence 68999999999999999999999999998876555432 2255889999999999999999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECC----------------CCCCCcceeee
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTL----------------APPTSSRASIT 2363 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~----------------t~~~k~v~sl~ 2363 (2548)
.+..... ......+|...|.+ |+|+++++++++ .|+.|++||++ .+..+.+..+.
T Consensus 127 ~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
T 1k8k_C 127 QENDWWV----CKHIKKPIRSTVLSLDWHPNSVLLAAGS---CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 199 (372)
T ss_dssp TTTTEEE----EEEECTTCCSCEEEEEECTTSSEEEEEE---TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC
T ss_pred CCCccee----eeeeecccCCCeeEEEEcCCCCEEEEEc---CCCCEEEEEcccccccccccccccccccchhhheEecC
Confidence 7652111 11223567777764 899999999986 89999999975 22356778888
Q ss_pred ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCC
Q 000054 2364 CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQN 2443 (2548)
Q Consensus 2364 gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~s 2443 (2548)
+|.+.|.+++|+|+ +.+|++|+.||.|++|| +.+++.+..+
T Consensus 200 ~~~~~v~~~~~~~~-------~~~l~~~~~d~~i~i~d---~~~~~~~~~~----------------------------- 240 (372)
T 1k8k_C 200 SSCGWVHGVCFSAN-------GSRVAWVSHDSTVCLAD---ADKKMAVATL----------------------------- 240 (372)
T ss_dssp CCSSCEEEEEECSS-------SSEEEEEETTTEEEEEE---GGGTTEEEEE-----------------------------
T ss_pred CCCCeEEEEEECCC-------CCEEEEEeCCCEEEEEE---CCCCceeEEE-----------------------------
Confidence 99999999999998 78999999999999999 4456666665
Q ss_pred ceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC--CcEE--EEeccc-----------------ccccccc
Q 000054 2444 GMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA--AQLV--YHWSKL-----------------HERHTFL 2502 (2548)
Q Consensus 2444 v~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~T--gell--~tL~~~-----------------Hs~hsfl 2502 (2548)
..|...|.+++|+|++.++++| .||.|++||+.+ ++.. ..+... .......
T Consensus 241 -------~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (372)
T 1k8k_C 241 -------ASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE 312 (372)
T ss_dssp -------ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---
T ss_pred -------ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccc
Confidence 6788899999999999999888 999999999987 5421 111000 0000000
Q ss_pred ------cCcccCCCCceeecEEEEEEc-CC----e-EEEEECCCcEEEEECCCC
Q 000054 2503 ------QPSSRGFGGVVRAGVTDIQVV-SR----G-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2503 ------~~tl~GH~~~V~a~VtsLafS-Pd----G-LaSGS~DGtIrIWDL~sg 2544 (2548)
.....+|.+. |++++|. ++ . |+||+.||+|++|+++++
T Consensus 313 ~~~~~~~~~~~~h~~~----v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 313 GSAAAGAGLDSLHKNS----VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp ------CCCSSSSSSC----EEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred cCccccccccccccCC----cceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 1112478754 4666755 65 4 999999999999999764
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-23 Score=246.53 Aligned_cols=234 Identities=21% Similarity=0.263 Sum_probs=191.6
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeE
Q 000054 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtV 2346 (2548)
+|.+.|++++|+|++++|++|+.||.|++|++.+++.. ..+.+|...|.+ |+|+++++++++ .|+.|
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~--------~~~~~h~~~v~~~~~~~~~~~l~s~~---~d~~i 89 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE--------KTISGHKLGISDVAWSSDSNLLVSAS---DDKTL 89 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE--------EEECCCSSCEEEEEECTTSSEEEEEE---TTSEE
T ss_pred ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccc--------hhhccCCCceEEEEEcCCCCEEEEEC---CCCEE
Confidence 46699999999999999999999999999999877532 336788888864 899999999997 89999
Q ss_pred EEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000054 2347 VVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2347 rIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
++||++. .+.+..+.+|...|.++.|+|+ ++++++|+.||.|++||+ .+++.+..+... .....
T Consensus 90 ~vwd~~~--~~~~~~~~~~~~~v~~~~~~~~-------~~~l~s~~~d~~i~iwd~---~~~~~~~~~~~~----~~~v~ 153 (312)
T 4ery_A 90 KIWDVSS--GKCLKTLKGHSNYVFCCNFNPQ-------SNLIVSGSFDESVRIWDV---KTGKCLKTLPAH----SDPVS 153 (312)
T ss_dssp EEEETTT--CCEEEEEECCSSCEEEEEECSS-------SSEEEEEETTSCEEEEET---TTCCEEEEECCC----SSCEE
T ss_pred EEEECCC--CcEEEEEcCCCCCEEEEEEcCC-------CCEEEEEeCCCcEEEEEC---CCCEEEEEecCC----CCcEE
Confidence 9999986 6788899999999999999998 789999999999999994 566776665211 22345
Q ss_pred ccccCCCCCC--ccCCCCCceEEEccc---------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccc
Q 000054 2427 AHADAQTGSG--SKPGDQNGMLWYIPK---------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKL 2495 (2548)
Q Consensus 2427 ~vafSpdGk~--v~s~D~sv~Iwdi~~---------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~ 2495 (2548)
.+.+++++.. +++.++.+++|++.. .|...+..++|+|++++|++++.||.|++||+++++.+..+
T Consensus 154 ~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~--- 230 (312)
T 4ery_A 154 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY--- 230 (312)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEE---
T ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE---
Confidence 6788999887 677889999999632 45678999999999999999999999999999999988877
Q ss_pred ccccccccCcccCCCCceeecEEEEEEc-CCe--EEEEECCCcEEEEECCCCc
Q 000054 2496 HERHTFLQPSSRGFGGVVRAGVTDIQVV-SRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2496 Hs~hsfl~~tl~GH~~~V~a~VtsLafS-PdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.+|...+... . ..++ +++ +++|+.||.|++||+.++.
T Consensus 231 -----------~~~~~~~~~~-~-~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 270 (312)
T 4ery_A 231 -----------TGHKNEKYCI-F-ANFSVTGGKWIVSGSEDNLVYIWNLQTKE 270 (312)
T ss_dssp -----------CSSCCSSSCC-C-EEEECSSSCEEEECCTTSCEEEEETTTCC
T ss_pred -----------EecCCceEEE-E-EEEEeCCCcEEEEECCCCEEEEEECCCch
Confidence 3444332221 1 1344 445 8899999999999998764
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-23 Score=257.83 Aligned_cols=234 Identities=18% Similarity=0.291 Sum_probs=192.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.++.+ +++++++|+.||+|++||+.+++.+..+. +|.+.|++++|++++ .+++|+.||+|++||++
T Consensus 125 ~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~----------~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 125 ITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLS----------GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEEC----------CCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred EEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEe----------CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence 456665 56899999999999999999999888774 256999999999988 89999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEE--Ec--CCCCEEEEEeccCCCCeEEEEECCCCCCC--------------------
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--IT--SSGSVIAAAGHSSNGINVVVWDTLAPPTS-------------------- 2357 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fS--pdGslLATgG~SS~DGtVrIWDl~t~~~k-------------------- 2357 (2548)
+++.. ..+.+|...|.+ ++ ++++++++++ .|+.|++||+......
T Consensus 192 ~~~~~--------~~~~~h~~~v~~l~~~~~~~~~~l~s~s---~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (464)
T 3v7d_B 192 KGCCT--------HVFEGHNSTVRCLDIVEYKNIKYIVTGS---RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 260 (464)
T ss_dssp TTEEE--------EEECCCSSCEEEEEEEESSSCEEEEEEE---TTSCEEEEECCCCCCC------CCSSEEESCGGGCT
T ss_pred CCcEE--------EEECCCCCccEEEEEecCCCCCEEEEEc---CCCcEEEeeCCCCcccccccccCCcceEeeccCCCe
Confidence 87533 346788888875 44 6788999986 8999999999863211
Q ss_pred -cceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC
Q 000054 2358 -SRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG 2436 (2548)
Q Consensus 2358 -~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~ 2436 (2548)
.+..+.+|...|.++... +.++++|+.||.|++||+ .+++.+..+
T Consensus 261 ~~~~~~~~~~~~v~~~~~~---------~~~l~~~~~d~~i~vwd~---~~~~~~~~~---------------------- 306 (464)
T 3v7d_B 261 YFVGVLRGHMASVRTVSGH---------GNIVVSGSYDNTLIVWDV---AQMKCLYIL---------------------- 306 (464)
T ss_dssp TEEEEECCCSSCEEEEEEE---------TTEEEEEETTSCEEEEET---TTTEEEEEE----------------------
T ss_pred EEEEEccCccceEEEEcCC---------CCEEEEEeCCCeEEEEEC---CCCcEEEEe----------------------
Confidence 145677899999988543 559999999999999994 456666665
Q ss_pred ccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeec
Q 000054 2437 SKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAG 2516 (2548)
Q Consensus 2437 v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~ 2516 (2548)
.+|...|.+++|+|+++++++|+.||.|++||+++++++.++ .+|...
T Consensus 307 --------------~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~--------------~~h~~~---- 354 (464)
T 3v7d_B 307 --------------SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL--------------QGHTAL---- 354 (464)
T ss_dssp --------------CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEE--------------CCCSSC----
T ss_pred --------------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEE--------------eCCCCc----
Confidence 679999999999999999999999999999999999988877 567644
Q ss_pred EEEEEEcCCeEEEEECCCcEEEEECCCCc
Q 000054 2517 VTDIQVVSRGFLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2517 VtsLafSPdGLaSGS~DGtIrIWDL~sg~ 2545 (2548)
|.++++++.-+++|+.||+|++||+.++.
T Consensus 355 v~~~~~~~~~l~s~s~dg~v~vwd~~~~~ 383 (464)
T 3v7d_B 355 VGLLRLSDKFLVSAAADGSIRGWDANDYS 383 (464)
T ss_dssp EEEEEECSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEEEEcCCEEEEEeCCCcEEEEECCCCc
Confidence 46668886559999999999999998754
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.6e-24 Score=260.37 Aligned_cols=267 Identities=17% Similarity=0.209 Sum_probs=179.3
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC------CCcEEE
Q 000054 2224 AFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL------DGTVCT 2297 (2548)
Q Consensus 2224 ~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~------DGtVrV 2297 (2548)
.+...+++.+ +.++.+.....|++.... +..|.+.|++++|+|||++|++|+. ||+|++
T Consensus 10 g~d~g~~~~~-~~~~g~~~~~~w~~p~~~--------------p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~ 74 (357)
T 4g56_B 10 GVDLGTENLY-FQSNGSSKGSAWGRPVTA--------------PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWV 74 (357)
T ss_dssp ---------------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEE
T ss_pred CCCCCccceE-EecCCCccccccCCCCCC--------------cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEE
Confidence 3343344444 445556778889865321 2346789999999999999999998 788999
Q ss_pred EEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcc--eeeeccCCCeEEEE
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR--ASITCHEGGARSIS 2373 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v--~sl~gHs~~VtSLa 2373 (2548)
|+..++..... ......+|...|.+ |+|++.++++ + .||+|++||+.++..... ....+|.+.|++++
T Consensus 75 ~~~~~~~~~~~----~~~~~~~~~~~V~~~~~s~d~~~l~~-s---~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~ 146 (357)
T 4g56_B 75 FKDPEGAPNES----LCTAGVQTEAGVTDVAWVSEKGILVA-S---DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLS 146 (357)
T ss_dssp ESSCC---CGG----GCSEEEECSSCEEEEEEETTTEEEEE-E---TTSCEEEC--------CCCCEEECCCSSCEEEEE
T ss_pred EECCCCCccee----EecccCCCCCCEEEEEEcCCCCEEEE-E---CCCEEEEeeccccceeEEEeeccCCCCCCEEEEE
Confidence 99877643221 11224467777764 8898876654 3 799999999986432222 33458999999999
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC---ccCCCCCceEEEcc
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG---SKPGDQNGMLWYIP 2450 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~---v~s~D~sv~Iwdi~ 2450 (2548)
|+|+ +++|++|+.||+|++|| ..+++.+..+.. + ......+++++++.. .++.|+.+++||+.
T Consensus 147 ~spd-------g~~l~sgs~dg~v~iwd---~~~~~~~~~~~~---h-~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~ 212 (357)
T 4g56_B 147 VFSD-------GTQAVSGGKDFSVKVWD---LSQKAVLKSYNA---H-SSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212 (357)
T ss_dssp ECSS-------SSEEEEEETTSCEEEEE---TTTTEEEEEECC---C-SSCEEEEEECTTCSSCEEEEETTSCEEECCTT
T ss_pred ECCC-------CCEEEEEeCCCeEEEEE---CCCCcEEEEEcC---C-CCCEEEEEEccCCCceeeeeccCCceEEEECC
Confidence 9998 78999999999999999 556777776621 1 223456788888753 56788999999853
Q ss_pred c----------CCCCCEEEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEE
Q 000054 2451 K----------AHLGSVTRISTVPN-TSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTD 2519 (2548)
Q Consensus 2451 ~----------gH~~~VtsLafSPd-G~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vts 2519 (2548)
. .|...|++++|+|+ +.+|++|+.|+.|++||+++++++.++ .+|.+. |++
T Consensus 213 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~--------------~~~~~~----v~~ 274 (357)
T 4g56_B 213 KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS--------------AVHSQN----ITG 274 (357)
T ss_dssp SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE--------------CCCSSC----EEE
T ss_pred CCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE--------------ecccee----EEE
Confidence 2 46678999999997 578999999999999999999887766 567643 567
Q ss_pred EEEcCCe---EEEEECCCcEEEEECCCCc
Q 000054 2520 IQVVSRG---FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2520 LafSPdG---LaSGS~DGtIrIWDL~sg~ 2545 (2548)
++|+|++ |++|+.||+|+|||++++.
T Consensus 275 l~~sp~~~~~lasgs~D~~i~iwd~~~~~ 303 (357)
T 4g56_B 275 LAYSYHSSPFLASISEDCTVAVLDADFSE 303 (357)
T ss_dssp EEECSSSSCCEEEEETTSCEEEECTTSCE
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEECCCCc
Confidence 8999987 8899999999999998874
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-23 Score=258.86 Aligned_cols=272 Identities=13% Similarity=0.151 Sum_probs=215.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEc--cCCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFD--HYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFS--PdG~~LaSGS~DGtVrVWD 2299 (2548)
+.+++|+|++ ++++|+.||+|++||+.+++.+..+.. |.+.|.+++|+ ++++++++|+.||+|++||
T Consensus 165 V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~----------h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd 233 (464)
T 3v7d_B 165 VWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEG----------HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233 (464)
T ss_dssp EEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECC----------CSSCEEEEEEEESSSCEEEEEEETTSCEEEEE
T ss_pred EEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECC----------CCCccEEEEEecCCCCCEEEEEcCCCcEEEee
Confidence 6899999988 999999999999999999988877642 55899999998 4789999999999999999
Q ss_pred cCCCcccccccC---------------ccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeec
Q 000054 2300 LEVGGRSNVRPM---------------ESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC 2364 (2548)
Q Consensus 2300 l~tgk~i~i~p~---------------~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g 2364 (2548)
++++........ .......+|...+.+++++++++++++ .|+.|++||+++ .+++..+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~---~d~~i~vwd~~~--~~~~~~~~~ 308 (464)
T 3v7d_B 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS---YDNTLIVWDVAQ--MKCLYILSG 308 (464)
T ss_dssp CCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEE---TTSCEEEEETTT--TEEEEEECC
T ss_pred CCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEe---CCCeEEEEECCC--CcEEEEecC
Confidence 987653211100 013457788999999999999999997 899999999986 678888999
Q ss_pred cCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCc
Q 000054 2365 HEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNG 2444 (2548)
Q Consensus 2365 Hs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv 2444 (2548)
|...|.+++|+|+ ++.+++|+.||.|++|| +.+++.+..+.. +. .....+.++++--.+++.|+.+
T Consensus 309 ~~~~v~~~~~~~~-------~~~l~sg~~dg~i~vwd---~~~~~~~~~~~~---h~-~~v~~~~~~~~~l~s~s~dg~v 374 (464)
T 3v7d_B 309 HTDRIYSTIYDHE-------RKRCISASMDTTIRIWD---LENGELMYTLQG---HT-ALVGLLRLSDKFLVSAAADGSI 374 (464)
T ss_dssp CSSCEEEEEEETT-------TTEEEEEETTSCEEEEE---TTTTEEEEEECC---CS-SCEEEEEECSSEEEEEETTSEE
T ss_pred CCCCEEEEEEcCC-------CCEEEEEeCCCcEEEEE---CCCCcEEEEEeC---CC-CcEEEEEEcCCEEEEEeCCCcE
Confidence 9999999999998 78999999999999999 556777777622 11 2234455553222277889999
Q ss_pred eEEEccc-------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecE
Q 000054 2445 MLWYIPK-------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGV 2517 (2548)
Q Consensus 2445 ~Iwdi~~-------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~V 2517 (2548)
++|++.. .|...+..++|+|+++++++|+ ||.|++||+++++++..+ +.+|.+ .|
T Consensus 375 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~-------------~~~~~~----~v 436 (464)
T 3v7d_B 375 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHAN-------------ILKDAD----QI 436 (464)
T ss_dssp EEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESC-------------TTTTCS----EE
T ss_pred EEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehh-------------hccCCC----cE
Confidence 9999643 3666788899999999999998 999999999999998754 245543 45
Q ss_pred EEEEEcCCe-EEEEECCCcEEEEEC
Q 000054 2518 TDIQVVSRG-FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2518 tsLafSPdG-LaSGS~DGtIrIWDL 2541 (2548)
++++|+++. +++++.||.+.+|-+
T Consensus 437 ~~v~~~~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 437 WSVNFKGKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEEE
T ss_pred EEEEecCCEEEEEEEeCCeEEEEEe
Confidence 777998666 567777876665543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-23 Score=252.84 Aligned_cols=239 Identities=16% Similarity=0.203 Sum_probs=177.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCC-------ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCc
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKD-------KATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT 2294 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg-------~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGt 2294 (2548)
|.+++|+|++++|++|+.|++|+|||.... +.+..+ . +|.+.|++++|+|++++|++|+.||+
T Consensus 61 v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~---~-------~h~~~V~~v~~sp~g~~las~s~D~~ 130 (330)
T 2hes_X 61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAII---E-------GHENEVKGVAWSNDGYYLATCSRDKS 130 (330)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEE---C-----------CEEEEEECTTSCEEEEEETTSC
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEE---c-------CCCCcEEEEEECCCCCEEEEEeCCCE
Confidence 689999999999999999999999998542 223333 2 35689999999999999999999999
Q ss_pred EEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEE
Q 000054 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSI 2372 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSL 2372 (2548)
|++||++.... .......+.+|...|.+ |+|++.+|++++ .|++|++||......+++..+.+|.+.|+++
T Consensus 131 v~iwd~~~~~~----~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s---~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~ 203 (330)
T 2hes_X 131 VWIWETDESGE----EYECISVLQEHSQDVKHVIWHPSEALLASSS---YDDTVRIWKDYDDDWECVAVLNGHEGTVWSS 203 (330)
T ss_dssp EEEEECCTTCC----CCEEEEEECCCSSCEEEEEECSSSSEEEEEE---TTSCEEEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred EEEEeccCCCC----CeEEEEEeccCCCceEEEEECCCCCEEEEEc---CCCeEEEEECCCCCeeEEEEccCCCCcEEEE
Confidence 99999954321 11123457789888874 899999999997 8999999998753335788899999999999
Q ss_pred EEccCCCCCCCCCCEEEEEeCCCcEEEEeCCcccc-C----ceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceE
Q 000054 2373 SVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIAT-G----KTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGML 2446 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~T-G----k~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~I 2446 (2548)
+|+|+. .+..|++|+.||+|++||++.... . .+...+ ..........++|++++.+ .++.|+.+++
T Consensus 204 ~~~~~~-----~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~v~~s~~~~l~s~~~dg~v~i 275 (330)
T 2hes_X 204 DFDKTE-----GVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAIL---PDVHKRQVYNVAWGFNGLIASVGADGVLAV 275 (330)
T ss_dssp EECCSS-----SSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEEC---CSCCSSCEEEEEECTTSCEEEEETTSCEEE
T ss_pred EecCCC-----CeeEEEEEeCCCeEEEEEecCCCccccceeEEeeec---ccccccceEEEEEcCCCEEEEEeCCCEEEE
Confidence 999973 145899999999999999642110 0 122222 1111223456677877755 6778999999
Q ss_pred EEcc-----------cCCCC-CEEEEEEeC--CCCEEEEEeCCCcEEEEECCC
Q 000054 2447 WYIP-----------KAHLG-SVTRISTVP--NTSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2447 wdi~-----------~gH~~-~VtsLafSP--dG~~LaSGS~DGtIrIWDl~T 2485 (2548)
|+.. .+|.. .|.+++|+| ++++|++|+.||+|++||+++
T Consensus 276 w~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 276 YEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 9842 35776 899999999 789999999999999999864
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-23 Score=248.04 Aligned_cols=259 Identities=11% Similarity=0.123 Sum_probs=200.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCC-EEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGH-RFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~-~LaSGS~DGtVrVWDl 2300 (2548)
+.+++|+|++++|++|+.||.|++||+.++.......... .|...|++++|+|+++ +|++|+.||.|++||+
T Consensus 14 v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-------RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp EEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-------ECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred EEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee-------ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 6899999999999999999999999999877211111111 2558999999999999 9999999999999999
Q ss_pred -CCCcccccccCccceeccC--CcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCC-------CCcceeeeccCCC
Q 000054 2301 -EVGGRSNVRPMESCLCFSS--HAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPP-------TSSRASITCHEGG 2368 (2548)
Q Consensus 2301 -~tgk~i~i~p~~s~~t~~g--H~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~-------~k~v~sl~gHs~~ 2368 (2548)
.++.. ..+.+ |...|.+ +++ ++.+++++ .|+.|++||++... .+++..+. |.+.
T Consensus 87 ~~~~~~---------~~~~~~~~~~~v~~l~~~~-~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~ 152 (342)
T 1yfq_A 87 IGSPSF---------QALTNNEANLGICRICKYG-DDKLIAAS---WDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNK 152 (342)
T ss_dssp SSSSSE---------EECBSCCCCSCEEEEEEET-TTEEEEEE---TTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCC
T ss_pred ccCCce---------EeccccCCCCceEEEEeCC-CCEEEEEc---CCCeEEEEcccccccccccccCCeeeEEe-eCCc
Confidence 76642 23566 8888864 788 99999987 89999999986400 23445555 8899
Q ss_pred eEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCcee-eeecCCCCCCCccccccccCC-CCCC--ccCCCCCc
Q 000054 2369 ARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTK-KHKHSDRGGSSINTCAHADAQ-TGSG--SKPGDQNG 2444 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l-~tl~~~~~~s~~~~~~vafSp-dGk~--v~s~D~sv 2444 (2548)
|.+++|+|+ .+++|+.||.|++||++.. +... .... .........+.++| ++.. +++.++.+
T Consensus 153 v~~~~~~~~---------~l~~~~~d~~i~i~d~~~~--~~~~~~~~~---~~~~~~i~~i~~~~~~~~~l~~~~~dg~i 218 (342)
T 1yfq_A 153 IFTMDTNSS---------RLIVGMNNSQVQWFRLPLC--EDDNGTIEE---SGLKYQIRDVALLPKEQEGYACSSIDGRV 218 (342)
T ss_dssp EEEEEECSS---------EEEEEESTTEEEEEESSCC--TTCCCEEEE---CSCSSCEEEEEECSGGGCEEEEEETTSEE
T ss_pred eEEEEecCC---------cEEEEeCCCeEEEEECCcc--ccccceeee---cCCCCceeEEEECCCCCCEEEEEecCCcE
Confidence 999999987 4999999999999996530 2211 1110 01122346778899 8887 66778889
Q ss_pred eEEEccc--------------CCCC---------CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccccccccc
Q 000054 2445 MLWYIPK--------------AHLG---------SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTF 2501 (2548)
Q Consensus 2445 ~Iwdi~~--------------gH~~---------~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsf 2501 (2548)
++|+... +|.. .|.+++|+|++++|++|+.||.|++||+.+++.+.++
T Consensus 219 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--------- 289 (342)
T 1yfq_A 219 AVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF--------- 289 (342)
T ss_dssp EEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC---------
T ss_pred EEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhh---------
Confidence 9988532 3544 9999999999999999999999999999999998766
Q ss_pred ccCcccCC-CCceeecEEEEEEcCCe--EEEEECCCc
Q 000054 2502 LQPSSRGF-GGVVRAGVTDIQVVSRG--FLSCGGDGS 2535 (2548)
Q Consensus 2502 l~~tl~GH-~~~V~a~VtsLafSPdG--LaSGS~DGt 2535 (2548)
.+| .+.| .+++ |+| |++|+.||+
T Consensus 290 -----~~~h~~~v----~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 290 -----AKFNEDSV----VKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp -----CCCSSSEE----EEEE--ECSSEEEEEEECTH
T ss_pred -----hcccCCCc----eEec--CCCCeEEEEecCCc
Confidence 565 6544 5556 777 899999999
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-24 Score=276.99 Aligned_cols=242 Identities=13% Similarity=0.078 Sum_probs=175.7
Q ss_pred cCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC------CCEEEEEeCCCcEEEEEcC
Q 000054 2228 HPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY------GHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2228 SPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd------G~~LaSGS~DGtVrVWDl~ 2301 (2548)
+|+++.+++|+.|++|+|||+.+++....... ...+|.+.|.+++|+|+ +.+||+|+.||+|++||+.
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~------~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~ 243 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQ------TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEII 243 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEE------EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECC
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEE------EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcC
Confidence 58899999999999999999987764321100 00124588999999996 5799999999999999998
Q ss_pred CCcccc---cccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE--E
Q 000054 2302 VGGRSN---VRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS--V 2374 (2548)
Q Consensus 2302 tgk~i~---i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa--f 2374 (2548)
.+.... .........+.+|...|.+ |+++ ..|++|+ .||+|++||++++ ..+...+.+|.+.|++|+ |
T Consensus 244 ~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs---~DgtV~lWD~~~~-~~~~~~~~~H~~~V~sv~~~~ 318 (524)
T 2j04_B 244 DNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGF---KNGFVAEFDLTDP-EVPSFYDQVHDSYILSVSTAY 318 (524)
T ss_dssp CCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEE---TTSEEEEEETTBC-SSCSEEEECSSSCEEEEEEEC
T ss_pred CCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEe---CCCEEEEEECCCC-CCceEEeecccccEEEEEEEc
Confidence 764221 0111223457788888875 6765 4788885 8999999999863 345667889999999994 4
Q ss_pred ccCCCCCCCCC-CEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCC
Q 000054 2375 FDNDLGSGSVS-PLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAH 2453 (2548)
Q Consensus 2375 sP~dlg~gs~g-~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH 2453 (2548)
+|+ + .+|+||+.||+|+|||+| +++++..+ .+|
T Consensus 319 s~~-------g~~~laS~S~D~tvklWD~~---~~~~~~~~------------------------------------~~~ 352 (524)
T 2j04_B 319 SDF-------EDTVVSTVAVDGYFYIFNPK---DIATTKTT------------------------------------VSR 352 (524)
T ss_dssp CTT-------SCCEEEEEETTSEEEEECGG---GHHHHCEE------------------------------------EEE
T ss_pred CCC-------CCeEEEEeccCCeEEEEECC---CCCccccc------------------------------------ccc
Confidence 554 5 799999999999999965 34443333 334
Q ss_pred C--CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEE
Q 000054 2454 L--GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLS 2529 (2548)
Q Consensus 2454 ~--~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaS 2529 (2548)
. ..|.+++|+|+++.+++++.|++|++||++++.++.++ .+|.+ .|++++|+|+| |++
T Consensus 353 ~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l--------------~gH~~----~V~sva~Sp~g~~l~S 414 (524)
T 2j04_B 353 FRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPL--------------VSRET----TITAIGVSRLHPMVLA 414 (524)
T ss_dssp CSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEE--------------EECSS----CEEEEECCSSCCBCEE
T ss_pred cccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceee--------------ecCCC----ceEEEEeCCCCCeEEE
Confidence 3 35789999999999999999999999999998877655 56765 45777999999 999
Q ss_pred EECCCcEEEEECCCC
Q 000054 2530 CGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2530 GS~DGtIrIWDL~sg 2544 (2548)
|+.||+|++||+..+
T Consensus 415 gs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 415 GSADGSLIITNAARR 429 (524)
T ss_dssp EETTTEEECCBSCSS
T ss_pred EECCCEEEEEechHh
Confidence 999999999998654
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-23 Score=258.31 Aligned_cols=261 Identities=16% Similarity=0.232 Sum_probs=203.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++ ++++++++|+.||.|++||..+++....+.. |.+.|++++| +++++++|+.||+|++||++
T Consensus 136 v~~~~--~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~----------h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~ 201 (435)
T 1p22_A 136 VYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTG----------HTGSVLCLQY--DERVIITGSSDSTVRVWDVN 201 (435)
T ss_dssp EEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECC----------CSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred EEEEE--ECCCEEEEEeCCCeEEEEeCCCCeEEEEEcC----------CCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence 46666 5899999999999999999999988877642 5589999999 78999999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCC-cceeeeccCCCeEEEEEccCCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTS-SRASITCHEGGARSISVFDNDLG 2380 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k-~v~sl~gHs~~VtSLafsP~dlg 2380 (2548)
+++.. ..+.+|...|.++..++..+++++ .||.|++||+...... ....+.+|...|.++.+.
T Consensus 202 ~~~~~--------~~~~~h~~~v~~l~~~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~----- 265 (435)
T 1p22_A 202 TGEML--------NTLIHHCEAVLHLRFNNGMMVTCS---KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD----- 265 (435)
T ss_dssp SCCEE--------EEECCCCSCEEEEECCTTEEEEEE---TTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE-----
T ss_pred CCcEE--------EEEcCCCCcEEEEEEcCCEEEEee---CCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC-----
Confidence 88643 346788888988766778999986 8999999999863211 126778999999999993
Q ss_pred CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc--------c
Q 000054 2381 SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI--------P 2450 (2548)
Q Consensus 2381 ~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi--------~ 2450 (2548)
+.++++|+.||.|++|| +.+++.+..+... . .....+.+ ++.. +++.|+.+++|++ +
T Consensus 266 ----~~~l~s~~~dg~i~vwd---~~~~~~~~~~~~~---~-~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 332 (435)
T 1p22_A 266 ----DKYIVSASGDRTIKVWN---TSTCEFVRTLNGH---K-RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL 332 (435)
T ss_dssp ----TTEEEEEETTSEEEEEE---TTTCCEEEEEECC---S-SCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred ----CCEEEEEeCCCeEEEEE---CCcCcEEEEEcCC---C-CcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence 45999999999999999 4567777766321 1 11233344 3444 7788999999995 3
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc---------EEEEecccccccccccCcccCCCCceeecEEEEE
Q 000054 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQ---------LVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQ 2521 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tge---------ll~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLa 2521 (2548)
.+|...|.+++| ++.+|++|+.||.|++||+.+++ ++.++ .+|.+.| ++++
T Consensus 333 ~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--------------~~h~~~v----~~l~ 392 (435)
T 1p22_A 333 EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL--------------VEHSGRV----FRLQ 392 (435)
T ss_dssp CCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE--------------CCCSSCC----CCEE
T ss_pred eCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec--------------cCCCCCe----EEEE
Confidence 579999999999 78999999999999999998765 55544 6777655 4557
Q ss_pred EcCCeEEEEECCCcEEEEECCCCc
Q 000054 2522 VVSRGFLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2522 fSPdGLaSGS~DGtIrIWDL~sg~ 2545 (2548)
|++..|++|+.||+|++||+.++.
T Consensus 393 ~~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 393 FDEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp ECSSCEEECCSSSEEEEEC-----
T ss_pred eCCCEEEEEeCCCEEEEEECCCCC
Confidence 844449999999999999998753
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-22 Score=253.76 Aligned_cols=262 Identities=18% Similarity=0.224 Sum_probs=211.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++ ++|+++++|+.||+|++||+.+++.+..+. +|.+.|++++|+ ++.+++|+.||+|++||+.
T Consensus 122 ~~~~~--~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~----------~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 122 ITCLQ--FCGNRIVSGSDDNTLKVWSAVTGKCLRTLV----------GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp EEEEE--EETTEEEEEETTSCEEEEETTTCCEEEECC----------CCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred EEEEE--EcCCEEEEEECCCcEEEEECCCCcEEEEEc----------CCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 35555 568999999999999999999998877763 356899999997 6799999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
+++.. ..+.+|...|.++..+++.+++++ .||.|++||+.. ++.+..+.+|...|.++.+.
T Consensus 188 ~~~~~--------~~~~~h~~~v~~~~~~~~~l~s~s---~dg~i~~wd~~~--~~~~~~~~~~~~~v~~~~~~------ 248 (445)
T 2ovr_B 188 TGECI--------HTLYGHTSTVRCMHLHEKRVVSGS---RDATLRVWDIET--GQCLHVLMGHVAAVRCVQYD------ 248 (445)
T ss_dssp TTEEE--------EEECCCSSCEEEEEEETTEEEEEE---TTSEEEEEESSS--CCEEEEEECCSSCEEEEEEC------
T ss_pred cCcEE--------EEECCCCCcEEEEEecCCEEEEEe---CCCEEEEEECCC--CcEEEEEcCCcccEEEEEEC------
Confidence 87533 346789999988766788999986 899999999986 67888899999999999983
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc--------cc
Q 000054 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI--------PK 2451 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi--------~~ 2451 (2548)
+..+++|+.||.|++|| ..+++.+..+.. +. .....+.+ ++.. +++.++.+++|++ +.
T Consensus 249 ---~~~l~~~~~dg~i~iwd---~~~~~~~~~~~~---~~-~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 316 (445)
T 2ovr_B 249 ---GRRVVSGAYDFMVKVWD---PETETCLHTLQG---HT-NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT 316 (445)
T ss_dssp ---SSCEEEEETTSCEEEEE---GGGTEEEEEECC---CS-SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred ---CCEEEEEcCCCEEEEEE---CCCCcEeEEecC---CC-CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc
Confidence 45999999999999999 556777766621 11 12233444 5555 6778899999995 34
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEE
Q 000054 2452 AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCG 2531 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS 2531 (2548)
+|...+.++.+ +++++++|+.||.|++||+++++.+.++.. ..+|.. .|++++|+++-+++|+
T Consensus 317 ~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----------~~~~~~----~v~~~~~~~~~l~s~~ 379 (445)
T 2ovr_B 317 GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQG-----------PNKHQS----AVTCLQFNKNFVITSS 379 (445)
T ss_dssp CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECS-----------TTSCSS----CEEEEEECSSEEEEEE
T ss_pred CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEcc-----------CCCCCC----CEEEEEECCCEEEEEe
Confidence 68888988887 467999999999999999999999987721 123543 4577789866699999
Q ss_pred CCCcEEEEECCCCc
Q 000054 2532 GDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2532 ~DGtIrIWDL~sg~ 2545 (2548)
.||+|++||+.++.
T Consensus 380 ~dg~v~iwd~~~~~ 393 (445)
T 2ovr_B 380 DDGTVKLWDLKTGE 393 (445)
T ss_dssp TTSEEEEEETTTCC
T ss_pred CCCeEEEEECCCCc
Confidence 99999999998874
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-23 Score=258.82 Aligned_cols=248 Identities=14% Similarity=0.272 Sum_probs=195.5
Q ss_pred EEEEEEcCC-CCEEEEEECCCeEEEEEcCC----------CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCC-EEEEE
Q 000054 2222 TRAFSSHPL-RPFFLVGSSNTHIYLWEFGK----------DKATATYGVLPAANVPPPYALASISALQFDHYGH-RFASA 2289 (2548)
Q Consensus 2222 V~~VsfSPd-G~~LASGS~DGsVrLWDl~t----------g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~-~LaSG 2289 (2548)
+.+++|+|+ +.++++|+.||.|++||+.+ ......+. +|.+.|++++|+|++. +|++|
T Consensus 131 v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~----------~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 131 VNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR----------GHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp CSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE----------CCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec----------CCCCCeEEEEeCCCCCCeEEEE
Confidence 588999997 67999999999999999986 34444443 3568899999999988 99999
Q ss_pred eCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcC-CCCEEEEEeccCCCCeEEEEECCCCC-CCcceeeecc
Q 000054 2290 ALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS-SGSVIAAAGHSSNGINVVVWDTLAPP-TSSRASITCH 2365 (2548)
Q Consensus 2290 S~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp-dGslLATgG~SS~DGtVrIWDl~t~~-~k~v~sl~gH 2365 (2548)
+.||+|++||+.++.... ........+.+|...|.+ |+| ++.++++++ .|+.|++||++... .+.+..+..|
T Consensus 201 ~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~---~dg~i~i~d~~~~~~~~~~~~~~~~ 276 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEH-RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA---DDQKLMIWDTRNNNTSKPSHTVDAH 276 (430)
T ss_dssp CTTSCEEEEETTSCCBGG-GEEECSEEECCCSSCEEEEEECSSCTTEEEEEE---TTSEEEEEETTCSCSSSCSEEEECC
T ss_pred eCCCeEEEEeCCCCCCCC-ceeccceeecCCCCCEeeeEEeCCCCCEEEEEe---CCCeEEEEECCCCCCCcceeEeecC
Confidence 999999999998753211 111123446688888864 788 678888886 89999999998632 2567788899
Q ss_pred CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCce
Q 000054 2366 EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGM 2445 (2548)
Q Consensus 2366 s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~ 2445 (2548)
...|++++|+|++ ..++++|+.||.|++||+|.. +..+..+
T Consensus 277 ~~~v~~i~~~p~~------~~~l~tg~~dg~v~vwd~~~~--~~~~~~~------------------------------- 317 (430)
T 2xyi_A 277 TAEVNCLSFNPYS------EFILATGSADKTVALWDLRNL--KLKLHSF------------------------------- 317 (430)
T ss_dssp SSCEEEEEECSSC------TTEEEEEETTSEEEEEETTCT--TSCSEEE-------------------------------
T ss_pred CCCeEEEEeCCCC------CCEEEEEeCCCeEEEEeCCCC--CCCeEEe-------------------------------
Confidence 9999999999983 458999999999999997631 2233333
Q ss_pred EEEcccCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCC--------------cEEEEecccccccccccCcccCCC
Q 000054 2446 LWYIPKAHLGSVTRISTVPNTS-LFLTGSKDGDVKLWDAKAA--------------QLVYHWSKLHERHTFLQPSSRGFG 2510 (2548)
Q Consensus 2446 Iwdi~~gH~~~VtsLafSPdG~-~LaSGS~DGtIrIWDl~Tg--------------ell~tL~~~Hs~hsfl~~tl~GH~ 2510 (2548)
.+|.+.|++++|+|+++ +|++++.||.|+|||+... +++.. +.+|.
T Consensus 318 -----~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--------------~~~h~ 378 (430)
T 2xyi_A 318 -----ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFI--------------HGGHT 378 (430)
T ss_dssp -----ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEE--------------CCCCS
T ss_pred -----ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEE--------------cCCCC
Confidence 57999999999999984 7999999999999999872 33332 36676
Q ss_pred CceeecEEEEEEcCCe---EEEEECCCcEEEEECCCCc
Q 000054 2511 GVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2511 ~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+ .|.+++|+|++ +++++.||.|++|++.++.
T Consensus 379 ~----~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~ 412 (430)
T 2xyi_A 379 A----KISDFSWNPNEPWIICSVSEDNIMQVWQMAENV 412 (430)
T ss_dssp S----CEEEEEECSSSTTEEEEEETTSEEEEEEECHHH
T ss_pred C----CceEEEECCCCCCEEEEEECCCCEEEeEccccc
Confidence 4 35777999998 8899999999999997643
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.3e-23 Score=264.25 Aligned_cols=280 Identities=15% Similarity=0.177 Sum_probs=219.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCC----ceeEEEeccCCCCCCCCCCCCC-eEEEEEcc--CCCEEEEEeCCCc
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKD----KATATYGVLPAANVPPPYALAS-ISALQFDH--YGHRFASAALDGT 2294 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg----~~l~t~~~l~ghs~~~~~H~~~-VtsVaFSP--dG~~LaSGS~DGt 2294 (2548)
+.+++|+|+|++|++++ ++.|++||+.++ +....+.. |.+. |++++|+| ++++|++|+.||+
T Consensus 21 v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~----------h~~~~v~~~~~sp~~~~~~l~s~~~dg~ 89 (615)
T 1pgu_A 21 TTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTG----------HGSSVVTTVKFSPIKGSQYLCSGDESGK 89 (615)
T ss_dssp CCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECT----------TTTSCEEEEEECSSTTCCEEEEEETTSE
T ss_pred eeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEec----------CCCceEEEEEECcCCCCCEEEEecCCCE
Confidence 58889999999999998 889999999988 77666632 5588 99999999 9999999999999
Q ss_pred EEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCC----CeEEEEECCCCCCCcceeeeccCCC
Q 000054 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNG----INVVVWDTLAPPTSSRASITCHEGG 2368 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~D----GtVrIWDl~t~~~k~v~sl~gHs~~ 2368 (2548)
|++||+.+++............+..|...|.+ |+|+++++++++ .+ +.|.+||. .+.+..+.+|.+.
T Consensus 90 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~~~~~~~~v~~~d~----~~~~~~~~~~~~~ 162 (615)
T 1pgu_A 90 VIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVG---EGRDNFGVFISWDS----GNSLGEVSGHSQR 162 (615)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEE---CCSSCSEEEEETTT----CCEEEECCSCSSC
T ss_pred EEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEec---cCCCCccEEEEEEC----CCcceeeecCCcc
Confidence 99999975521100011122346678888874 899999999987 45 68889984 4678888999999
Q ss_pred eEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCC-CCC--ccCCCCCce
Q 000054 2369 ARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQT-GSG--SKPGDQNGM 2445 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpd-Gk~--v~s~D~sv~ 2445 (2548)
|++++|+|++ ...+++|+.||.|++|| ..+++.+..+..... .......+.++|+ +++ +++.++.++
T Consensus 163 v~~~~~~~~~------~~~l~~~~~d~~v~vwd---~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 232 (615)
T 1pgu_A 163 INACHLKQSR------PMRSMTVGDDGSVVFYQ---GPPFKFSASDRTHHK-QGSFVRDVEFSPDSGEFVITVGSDRKIS 232 (615)
T ss_dssp EEEEEECSSS------SCEEEEEETTTEEEEEE---TTTBEEEEEECSSSC-TTCCEEEEEECSTTCCEEEEEETTCCEE
T ss_pred EEEEEECCCC------CcEEEEEeCCCcEEEEe---CCCcceeeeecccCC-CCceEEEEEECCCCCCEEEEEeCCCeEE
Confidence 9999999993 33899999999999999 556677766632111 1114567889999 887 567789999
Q ss_pred EEEc--------c-c---CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCce
Q 000054 2446 LWYI--------P-K---AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVV 2513 (2548)
Q Consensus 2446 Iwdi--------~-~---gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V 2513 (2548)
+|++ + . +|...|.+++|+ ++++|++++.||.|++||+++++.+..+. .+...+
T Consensus 233 vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~--------------~~~~~~ 297 (615)
T 1pgu_A 233 CFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWT--------------LDKQQL 297 (615)
T ss_dssp EEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEE--------------CCTTCG
T ss_pred EEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEc--------------CCCCcc
Confidence 9984 2 4 899999999999 99999999999999999999999988773 222222
Q ss_pred eecEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2514 RAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2514 ~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
...+.++.++... +++++.||.|++||+.++
T Consensus 298 ~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~ 329 (615)
T 1pgu_A 298 GNQQVGVVATGNGRIISLSLDGTLNFYELGHD 329 (615)
T ss_dssp GGCEEEEEEEETTEEEEEETTSCEEEEETTEE
T ss_pred cCceeEEEeCCCCeEEEEECCCCEEEEECCCC
Confidence 2345666776333 999999999999999864
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-23 Score=269.03 Aligned_cols=260 Identities=10% Similarity=0.050 Sum_probs=181.8
Q ss_pred EEEEEEcCC------CCEEEEEECCCeEEEEEcCCCceeE--EEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000054 2222 TRAFSSHPL------RPFFLVGSSNTHIYLWEFGKDKATA--TYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2222 V~~VsfSPd------G~~LASGS~DGsVrLWDl~tg~~l~--t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
+.+++|+|+ +.+||+|+.||+|+|||+.++.... .+. .........+|.+.|++++|++++ .|++|+.||
T Consensus 210 V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~-~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~Dg 287 (524)
T 2j04_B 210 VWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM-CEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNG 287 (524)
T ss_dssp EEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC-CCSCSEEECCTTTCEEEEEESSSS-EEEEEETTS
T ss_pred EEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee-ecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCC
Confidence 689999997 5799999999999999998764320 000 000000113466899999999864 899999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEE----EcCCC-CEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCC-
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY----ITSSG-SVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG- 2367 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a----fSpdG-slLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~- 2367 (2548)
+|++||++++.. ....+.+|...|.+ ++++| ++|++++ .|++|+|||++. .++...+.+|..
T Consensus 288 tV~lWD~~~~~~-------~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S---~D~tvklWD~~~--~~~~~~~~~~~~~ 355 (524)
T 2j04_B 288 FVAEFDLTDPEV-------PSFYDQVHDSYILSVSTAYSDFEDTVVSTVA---VDGYFYIFNPKD--IATTKTTVSRFRG 355 (524)
T ss_dssp EEEEEETTBCSS-------CSEEEECSSSCEEEEEEECCTTSCCEEEEEE---TTSEEEEECGGG--HHHHCEEEEECSC
T ss_pred EEEEEECCCCCC-------ceEEeecccccEEEEEEEcCCCCCeEEEEec---cCCeEEEEECCC--CCccccccccccc
Confidence 999999987632 12336788887764 46777 8999986 899999999986 456667777764
Q ss_pred -CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceE
Q 000054 2368 -GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGML 2446 (2548)
Q Consensus 2368 -~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~I 2446 (2548)
.|.+++|+|+ +..+++++.|++|++||+| ++.++..+
T Consensus 356 ~~v~~v~fsp~-------~~~l~s~~~d~tv~lwd~~---~~~~~~~l-------------------------------- 393 (524)
T 2j04_B 356 SNLVPVVYCPQ-------IYSYIYSDGASSLRAVPSR---AAFAVHPL-------------------------------- 393 (524)
T ss_dssp CSCCCEEEETT-------TTEEEEECSSSEEEEEETT---CTTCCEEE--------------------------------
T ss_pred CcccceEeCCC-------cCeEEEeCCCCcEEEEECc---ccccceee--------------------------------
Confidence 5889999998 6789999999999999955 45554444
Q ss_pred EEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc--------------EEEEeccccccc-------------
Q 000054 2447 WYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQ--------------LVYHWSKLHERH------------- 2499 (2548)
Q Consensus 2447 wdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tge--------------ll~tL~~~Hs~h------------- 2499 (2548)
.+|.+.|++|+|+|+|++|++|+.||+|++||+..+. .+..+.-...+.
T Consensus 394 ----~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~ 469 (524)
T 2j04_B 394 ----VSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPL 469 (524)
T ss_dssp ----EECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-
T ss_pred ----ecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceeccc
Confidence 5677778888888877777888888888877764320 111110000000
Q ss_pred ---ccccCcccCCCCceeecEEEEEEcCCe-----EEEEECCCcEEEEECCCCc
Q 000054 2500 ---TFLQPSSRGFGGVVRAGVTDIQVVSRG-----FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2500 ---sfl~~tl~GH~~~V~a~VtsLafSPdG-----LaSGS~DGtIrIWDL~sg~ 2545 (2548)
......+.+|.+.| .+++|+|++ +++|+.||+||||++....
T Consensus 470 ~~~g~~~~~l~gh~~~V----~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~~ 519 (524)
T 2j04_B 470 TVNDVSKAKIDAHGINI----TCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEH 519 (524)
T ss_dssp ------------CCCSC----CCEEECCSTTTTTEEEEECTTSEEEEEECSCC-
T ss_pred ccCCcceeeecCCCceE----EEEECCCCCCccHHHHhhccCceEEEEEccccc
Confidence 00122356777544 566999994 8899999999999998653
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-22 Score=239.59 Aligned_cols=236 Identities=18% Similarity=0.227 Sum_probs=186.5
Q ss_pred CCCCeEEEEEccC-CCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeE
Q 000054 2270 ALASISALQFDHY-GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2270 H~~~VtsVaFSPd-G~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtV 2346 (2548)
|.+.|++|+|+|+ +++|+||+.||+|++||+.+++.... .....+.+|...|.+ |+|+|+++++++ .|+.|
T Consensus 37 H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~---~~~~~l~~h~~~V~~~~~s~dg~~l~s~~---~d~~i 110 (340)
T 4aow_A 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG---IPQRALRGHSHFVSDVVISSDGQFALSGS---WDGTL 110 (340)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE---EEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSEE
T ss_pred ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc---eeeEEEeCCCCCEEEEEECCCCCEEEEEc---ccccc
Confidence 6699999999997 68999999999999999987643221 123457889998875 899999999997 89999
Q ss_pred EEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000054 2347 VVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2347 rIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
++|+... .........+...+..+.+.+. +..+++|+.||.+++||++. ....... . .. ......
T Consensus 111 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~l~s~s~d~~~~~~d~~~---~~~~~~~-~-~~-~~~~v~ 175 (340)
T 4aow_A 111 RLWDLTT--GTTTRRFVGHTKDVLSVAFSSD-------NRQIVSGSRDKTIKLWNTLG---VCKYTVQ-D-ES-HSEWVS 175 (340)
T ss_dssp EEEETTT--TEEEEEEECCSSCEEEEEECTT-------SSCEEEEETTSCEEEECTTS---CEEEEEC-S-SS-CSSCEE
T ss_pred eEEeecc--cceeeeecCCCCceeEEEEeec-------CccceeecCCCeEEEEEeCC---CceEEEE-e-cc-ccCccc
Confidence 9999975 4556667778889999998888 67999999999999999642 2222111 1 11 112234
Q ss_pred ccccCCCCCC----ccCCCCCceEEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 000054 2427 AHADAQTGSG----SKPGDQNGMLWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSK 2494 (2548)
Q Consensus 2427 ~vafSpdGk~----v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~ 2494 (2548)
.+.+++++.. .++.++.+++|+. +.+|.+.|++++|+|++++|++|+.||.|++||+++++.+..+
T Consensus 176 ~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~-- 253 (340)
T 4aow_A 176 CVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL-- 253 (340)
T ss_dssp EEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE--
T ss_pred ceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee--
Confidence 4556666443 5667889999985 3579999999999999999999999999999999999988766
Q ss_pred cccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCCc
Q 000054 2495 LHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2495 ~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.++. .|..++|+|++ +++++.|+.|++||++++.
T Consensus 254 ------------~~~~-----~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~ 288 (340)
T 4aow_A 254 ------------DGGD-----IINALCFSPNRYWLCAATGPSIKIWDLEGKI 288 (340)
T ss_dssp ------------ECSS-----CEEEEEECSSSSEEEEEETTEEEEEETTTTE
T ss_pred ------------cCCc-----eEEeeecCCCCceeeccCCCEEEEEECCCCe
Confidence 2332 35778999999 8899999999999998753
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=9.9e-23 Score=253.74 Aligned_cols=249 Identities=17% Similarity=0.216 Sum_probs=183.0
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccc----------eeccCCcccEE--EEcCCCCEEEEE
Q 000054 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESC----------LCFSSHAMDVS--YITSSGSVIAAA 2337 (2548)
Q Consensus 2270 H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~----------~t~~gH~~~V~--afSpdGslLATg 2337 (2548)
|.+.|.+++|+|+|++|++|+ |+++++|++.+++.......... .....+...|. +|+|+|++++++
T Consensus 63 h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~ 141 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 141 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence 568999999999999999976 78999999988764322110000 00011222354 489999999998
Q ss_pred eccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCC
Q 000054 2338 GHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSD 2417 (2548)
Q Consensus 2338 G~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~ 2417 (2548)
+ .|+.|++||+.. .+.+..+.+|...|++++|+|+ +..|++|+.||+|++||+ .++++...+..
T Consensus 142 ~---~d~~i~iwd~~~--~~~~~~~~~h~~~v~~~~~~p~-------~~~l~s~s~d~~v~iwd~---~~~~~~~~~~~- 205 (393)
T 1erj_A 142 A---EDRLIRIWDIEN--RKIVMILQGHEQDIYSLDYFPS-------GDKLVSGSGDRTVRIWDL---RTGQCSLTLSI- 205 (393)
T ss_dssp E---TTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTT-------SSEEEEEETTSEEEEEET---TTTEEEEEEEC-
T ss_pred c---CCCeEEEEECCC--CcEEEEEccCCCCEEEEEEcCC-------CCEEEEecCCCcEEEEEC---CCCeeEEEEEc-
Confidence 6 899999999976 6678889999999999999998 789999999999999994 45666655421
Q ss_pred CCCCCccccccccCC-CCCC--ccCCCCCceEEEcc---------------cCCCCCEEEEEEeCCCCEEEEEeCCCcEE
Q 000054 2418 RGGSSINTCAHADAQ-TGSG--SKPGDQNGMLWYIP---------------KAHLGSVTRISTVPNTSLFLTGSKDGDVK 2479 (2548)
Q Consensus 2418 ~~~s~~~~~~vafSp-dGk~--v~s~D~sv~Iwdi~---------------~gH~~~VtsLafSPdG~~LaSGS~DGtIr 2479 (2548)
......++++| +|++ +++.|+.+++|+.. .+|...|++++|+|+|++|++|+.||+|+
T Consensus 206 ----~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~ 281 (393)
T 1erj_A 206 ----EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 281 (393)
T ss_dssp ----SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred ----CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEE
Confidence 11245567787 7776 67788999999852 46899999999999999999999999999
Q ss_pred EEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2480 LWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2480 IWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+||+++............+. ....+.+|.+. |.+++|+|++ |++|+.||+|++||+.++.
T Consensus 282 ~wd~~~~~~~~~~~~~~~~~--~~~~~~~h~~~----v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~ 343 (393)
T 1erj_A 282 LWNLQNANNKSDSKTPNSGT--CEVTYIGHKDF----VLSVATTQNDEYILSGSKDRGVLFWDKKSGN 343 (393)
T ss_dssp EEEC---------------C--EEEEEECCSSC----EEEEEECGGGCEEEEEETTSEEEEEETTTCC
T ss_pred EEECCCCCCcccccCCCCCc--ceEEEecccCc----EEEEEECCCCCEEEEEeCCCeEEEEECCCCe
Confidence 99998754432211000000 01124678754 4677999999 8999999999999998764
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=280.58 Aligned_cols=157 Identities=9% Similarity=0.071 Sum_probs=126.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|.+++|+| |++|++++.|++|+|||+.+++.+..+. |.+.|++++|+|+++++++|+.||+|++||++
T Consensus 61 V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-----------~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~ 128 (902)
T 2oaj_A 61 IKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-----------VPGKITSIDTDASLDWMLIGLQNGSMIVYDID 128 (902)
T ss_dssp EEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-----------CSSCEEEEECCTTCSEEEEEETTSCEEEEETT
T ss_pred EEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-----------CCCCEEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence 68999999 8899999999999999999998887773 23789999999999999999999999999998
Q ss_pred CCcccccccC--ccc-eeccCCcccEEE--EcCC-CCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc----------
Q 000054 2302 VGGRSNVRPM--ESC-LCFSSHAMDVSY--ITSS-GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH---------- 2365 (2548)
Q Consensus 2302 tgk~i~i~p~--~s~-~t~~gH~~~V~a--fSpd-GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH---------- 2365 (2548)
++........ ... ....+|...|.+ |+|+ +..+++++ .|+.| +||++. .+++..+..|
T Consensus 129 ~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~---~dg~v-lWd~~~--~~~~~~~~~~~~~g~~~~~~ 202 (902)
T 2oaj_A 129 RDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY---EYVTL-TYSLVE--NEIKQSFIYELPPFAPGGDF 202 (902)
T ss_dssp TTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC---SSCEE-EEETTT--TEEEEEECCCBCTTCCCSTT
T ss_pred CCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe---CCCcE-EEECCC--CceEEEEecccCCcCCCccc
Confidence 7753211000 000 224678777764 8886 46777774 89999 999986 5566666554
Q ss_pred --------CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCC
Q 000054 2366 --------EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFR 2403 (2548)
Q Consensus 2366 --------s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR 2403 (2548)
...|++++|+|+ +.+|++|+.||+|++||++
T Consensus 203 ~~~~~~~h~~~V~~v~fspd-------g~~lasgs~Dg~i~lWd~~ 241 (902)
T 2oaj_A 203 SEKTNEKRTPKVIQSLYHPN-------SLHIITIHEDNSLVFWDAN 241 (902)
T ss_dssp CCCTTSCBCCCEEEEEECTT-------SSEEEEEETTCCEEEEETT
T ss_pred ccccccccCCCeEEEEEcCC-------CCEEEEEECCCeEEEEECC
Confidence 578999999999 7899999999999999974
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-22 Score=251.58 Aligned_cols=263 Identities=19% Similarity=0.324 Sum_probs=210.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+ +.++++|+.||+|++||+.+++.+..+.. |...|.++.|+ ++.+++|+.||+|++||++
T Consensus 162 v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~----------h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~ 227 (445)
T 2ovr_B 162 VWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYG----------HTSTVRCMHLH--EKRVVSGSRDATLRVWDIE 227 (445)
T ss_dssp EEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECC----------CSSCEEEEEEE--TTEEEEEETTSEEEEEESS
T ss_pred EEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECC----------CCCcEEEEEec--CCEEEEEeCCCEEEEEECC
Confidence 5777776 67999999999999999999988877642 55899999995 6789999999999999999
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
+++.. ..+.+|...|.++..+++.+++++ .||.|++||+++ .+.+..+.+|...|.++.| +
T Consensus 228 ~~~~~--------~~~~~~~~~v~~~~~~~~~l~~~~---~dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~--~---- 288 (445)
T 2ovr_B 228 TGQCL--------HVLMGHVAAVRCVQYDGRRVVSGA---YDFMVKVWDPET--ETCLHTLQGHTNRVYSLQF--D---- 288 (445)
T ss_dssp SCCEE--------EEEECCSSCEEEEEECSSCEEEEE---TTSCEEEEEGGG--TEEEEEECCCSSCEEEEEE--C----
T ss_pred CCcEE--------EEEcCCcccEEEEEECCCEEEEEc---CCCEEEEEECCC--CcEeEEecCCCCceEEEEE--C----
Confidence 87543 336788888888666899999986 899999999986 6778889999999999999 3
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEcc--------c
Q 000054 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIP--------K 2451 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~--------~ 2451 (2548)
+..+++|+.||.|++|| +.+++.+..+... .. ....+. .++.. +++.|+.+++|++. .
T Consensus 289 ---~~~l~~~~~d~~i~i~d---~~~~~~~~~~~~~---~~-~v~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 356 (445)
T 2ovr_B 289 ---GIHVVSGSLDTSIRVWD---VETGNCIHTLTGH---QS-LTSGME--LKDNILVSGNADSTVKIWDIKTGQCLQTLQ 356 (445)
T ss_dssp ---SSEEEEEETTSCEEEEE---TTTCCEEEEECCC---CS-CEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred ---CCEEEEEeCCCeEEEEE---CCCCCEEEEEcCC---cc-cEEEEE--EeCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence 55999999999999999 4567777665221 11 122223 34444 67788999999953 2
Q ss_pred ---CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--
Q 000054 2452 ---AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-- 2526 (2548)
Q Consensus 2452 ---gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-- 2526 (2548)
.|...|++++|+ +++|++|+.||.|++||+.+++.+..+...+ ..+|. ..|++++|+|+|
T Consensus 357 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~---------~~~~~----~~v~~~~~s~~~~~ 421 (445)
T 2ovr_B 357 GPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLE---------SGGSG----GVVWRIRASNTKLV 421 (445)
T ss_dssp STTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECT---------TGGGT----CEEEEEEECSSEEE
T ss_pred cCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccc---------cCCCC----ceEEEEEecCCEEE
Confidence 388899999995 6899999999999999999999988772111 12344 346788999999
Q ss_pred EEEEECCCc----EEEEECCCC
Q 000054 2527 FLSCGGDGS----VKLIQLEDY 2544 (2548)
Q Consensus 2527 LaSGS~DGt----IrIWDL~sg 2544 (2548)
+++|+.||+ |.+||++..
T Consensus 422 la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 422 CAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEECSSSSSCCEEEEEECCCC
T ss_pred EEEcccCCCCccEEEEEECCCC
Confidence 789999998 999999865
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-23 Score=279.90 Aligned_cols=255 Identities=21% Similarity=0.209 Sum_probs=197.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCC--ceeEEEeccCCCCCCCCCCCCCeEEEEEccC--CCEEEEEeCCCcEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKD--KATATYGVLPAANVPPPYALASISALQFDHY--GHRFASAALDGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg--~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd--G~~LaSGS~DGtVrV 2297 (2548)
|.+++|+|+|+++++|+.||.|+|||+.++ +....+. +|.+.|++++|+++ +++|++|+.||+|++
T Consensus 12 V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~----------~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 12 IHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT----------GHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp EEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEEC----------CCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred eEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceecc----------CCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 799999999999999999999999999843 4444442 35689999999987 999999999999999
Q ss_pred EEcCCCcccccccCccceeccCCcccEEE--EcCC--CCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSS--GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpd--GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
||+.+++.. ....+.+|...|.+ |+|+ ++.+++++ .||.|++||++.........+.+|...|.++.
T Consensus 82 wd~~~~~~~------~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs---~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~ 152 (753)
T 3jro_A 82 WKEENGRWS------QIAVHAVHSASVNSVQWAPHEYGPLLLVAS---SDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 152 (753)
T ss_dssp EEEETTEEE------EEEEECCCSSCEEEEEECCGGGCSEEEEEE---TTSEEEEEECCSSSCCCCEEEECCSSCEEEEE
T ss_pred EECCCCccc------ccccccCCCCCeEEEEECCCCCCCEEEEEe---CCCcEEEEEeecCCCcceeEeecCCCceEEEE
Confidence 999876421 12346778888875 8898 99999997 89999999998754455677789999999999
Q ss_pred EccCCCCC------CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEE
Q 000054 2374 VFDNDLGS------GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLW 2447 (2548)
Q Consensus 2374 fsP~dlg~------gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iw 2447 (2548)
|+|..... .+.+..+++|+.||.|++||++. +.... .+.
T Consensus 153 ~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~---~~~~~--------------------------------~~~ 197 (753)
T 3jro_A 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS---DAQTY--------------------------------VLE 197 (753)
T ss_dssp ECCCC---------CGGGCCEEEEETTSCEEEEEEET---TTTEE--------------------------------EEE
T ss_pred ecCcccccccccccCCCCCEEEEEECCCeEEEEeccC---Ccccc--------------------------------eee
Confidence 99941000 00167999999999999999652 21110 111
Q ss_pred EcccCCCCCEEEEEEeCC---CCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcC
Q 000054 2448 YIPKAHLGSVTRISTVPN---TSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVS 2524 (2548)
Q Consensus 2448 di~~gH~~~VtsLafSPd---G~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSP 2524 (2548)
..+.+|.+.|++++|+|+ +.+|++|+.||.|++||+.+++...... .....+|.+. |++++|+|
T Consensus 198 ~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~---------~~~~~~~~~~----v~~l~~sp 264 (753)
T 3jro_A 198 STLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT---------LLKEEKFPDV----LWRASWSL 264 (753)
T ss_dssp EEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCC---------BSSSSCCSSC----CCCEEECT
T ss_pred eeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeE---------EeccCCCCCc----eEEEEEcC
Confidence 223789999999999999 9999999999999999998864221110 0112445543 46679999
Q ss_pred Ce--EEEEECCCcEEEEECCC
Q 000054 2525 RG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2525 dG--LaSGS~DGtIrIWDL~s 2543 (2548)
+| +++|+.||.|++|++.+
T Consensus 265 dg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 265 SGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp TTCCEEEECSSSCEECCBCCS
T ss_pred CCCEEEEEcCCCEEEEEecCC
Confidence 99 99999999999999985
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-23 Score=254.17 Aligned_cols=197 Identities=10% Similarity=0.057 Sum_probs=150.1
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc---eeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK---ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~---~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVW 2298 (2548)
+.+++|+|++++|++|+.||+|++||+.+++ ....+ ..|...|++++|+|++++|++|+.||+|++|
T Consensus 58 v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 127 (377)
T 3dwl_C 58 VTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVL----------LRLNRAATFVRWSPNEDKFAVGSGARVISVC 127 (377)
T ss_dssp EEEEEECTTTCCEEEEETTSSEEEC------CCCCEEEC----------CCCSSCEEEEECCTTSSCCEEEESSSCEEEC
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEe----------cccCCceEEEEECCCCCEEEEEecCCeEEEE
Confidence 6999999999999999999999999999876 22222 2356899999999999999999999999999
Q ss_pred EcCCCcccccccCccceeccC-CcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCC----------------CCcc
Q 000054 2299 QLEVGGRSNVRPMESCLCFSS-HAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPP----------------TSSR 2359 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~g-H~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~----------------~k~v 2359 (2548)
|+++++... ....+.+ |...|.+ |+|+++++++++ .|+.|++||++... .+++
T Consensus 128 d~~~~~~~~-----~~~~~~~~h~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (377)
T 3dwl_C 128 YFEQENDWW-----VSKHLKRPLRSTILSLDWHPNNVLLAAGC---ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVC 199 (377)
T ss_dssp CC-----CC-----CCEEECSSCCSCEEEEEECTTSSEEEEEE---SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEE
T ss_pred EECCcccce-----eeeEeecccCCCeEEEEEcCCCCEEEEEe---CCCEEEEEEEEecccCCCccccccccccchhhhh
Confidence 998765211 1233555 8888874 899999999986 89999999985311 2344
Q ss_pred eeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCce----eeeecCCCCCCCccccccccCCCCC
Q 000054 2360 ASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKT----KKHKHSDRGGSSINTCAHADAQTGS 2435 (2548)
Q Consensus 2360 ~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~----l~tl~~~~~~s~~~~~~vafSpdGk 2435 (2548)
..+ +|.+.|++++|+|+ +++|++|+.||.|++||++ +++. +..+
T Consensus 200 ~~~-~~~~~v~~~~~sp~-------~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~--------------------- 247 (377)
T 3dwl_C 200 AEY-PSGGWVHAVGFSPS-------GNALAYAGHDSSVTIAYPS---APEQPPRALITV--------------------- 247 (377)
T ss_dssp ECC-CCSSSEEEEEECTT-------SSCEEEEETTTEEC-CEEC---STTSCEEECCCE---------------------
T ss_pred hcc-cCCceEEEEEECCC-------CCEEEEEeCCCcEEEEECC---CCCCcceeeEee---------------------
Confidence 555 89999999999998 7899999999999999953 4443 2222
Q ss_pred CccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 000054 2436 GSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2436 ~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
.+|...|.+++|+|++++|++|+.|+.+ +|+..
T Consensus 248 ---------------~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 248 ---------------KLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ---------------ECSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred ---------------cCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 6799999999999999999999877666 66655
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-21 Score=238.46 Aligned_cols=268 Identities=13% Similarity=0.136 Sum_probs=177.9
Q ss_pred EEEEEEcC-CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC---CCEEEEEeCCCcEEE
Q 000054 2222 TRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY---GHRFASAALDGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSP-dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd---G~~LaSGS~DGtVrV 2297 (2548)
+.+++|+| ++.++++|+.||.|++||+.+++....+. +...+.++.|++. +.++++|+.||.|++
T Consensus 102 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 170 (408)
T 4a11_B 102 VETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-----------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQL 170 (408)
T ss_dssp EEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-----------CSSCEEEEEECSSCSSCCEEEEEESSSSEEE
T ss_pred EEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-----------CCCceeeeEeecCCCCCcEEEEEcCCCeEEE
Confidence 68999999 77899999999999999999998887764 2377999999984 559999999999999
Q ss_pred EEcCCCcccccccCccceeccCCcccEEE--EcCCCC-EEEEEeccCCCCeEEEEECCCCCCCcceee------------
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSSRASI------------ 2362 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGs-lLATgG~SS~DGtVrIWDl~t~~~k~v~sl------------ 2362 (2548)
||+++++.. ..+.+|...|.+ ++|++. ++++++ .||.|++||++.. ..++..+
T Consensus 171 ~d~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~ll~~~~---~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~ 238 (408)
T 4a11_B 171 CDLKSGSCS--------HILQGHRQEILAVSWSPRYDYILATAS---ADSRVKLWDVRRA-SGCLITLDQHNGKKSQAVE 238 (408)
T ss_dssp EESSSSCCC--------EEECCCCSCEEEEEECSSCTTEEEEEE---TTSCEEEEETTCS-SCCSEECCTTTTCSCCCTT
T ss_pred EeCCCccee--------eeecCCCCcEEEEEECCCCCcEEEEEc---CCCcEEEEECCCC-Ccccccccccccccceeec
Confidence 999877532 336678888874 899988 577876 8999999999763 2233333
Q ss_pred ---eccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCC--ccccccccCCCCCC-
Q 000054 2363 ---TCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSS--INTCAHADAQTGSG- 2436 (2548)
Q Consensus 2363 ---~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~--~~~~~vafSpdGk~- 2436 (2548)
.+|.+.|.+++|+|+ +.+|++|+.||.|++||++ +++............. ...........+..
T Consensus 239 ~~~~~~~~~v~~~~~~~~-------~~~l~~~~~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (408)
T 4a11_B 239 SANTAHNGKVNGLCFTSD-------GLHLLTVGTDNRMRLWNSS---NGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFV 308 (408)
T ss_dssp TSSCSCSSCEEEEEECTT-------SSEEEEEETTSCEEEEETT---TCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEE
T ss_pred cccccccCceeEEEEcCC-------CCEEEEecCCCeEEEEECC---CCccceeccccccccccccceeEEecCCCceEE
Confidence 578999999999998 7899999999999999954 4444332211111111 11111112222333
Q ss_pred ccCCCCCceEEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccC
Q 000054 2437 SKPGDQNGMLWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRG 2508 (2548)
Q Consensus 2437 v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~G 2508 (2548)
.+..++.+++|++ +.+|.+.|++++|+|++++|++|+.||.|++||+++++.+.... .
T Consensus 309 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~--------------~ 374 (408)
T 4a11_B 309 FVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDD--------------E 374 (408)
T ss_dssp EEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----------------------
T ss_pred EEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCC--------------c
Confidence 5667788999985 35799999999999999999999999999999999998876442 1
Q ss_pred CCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCC
Q 000054 2509 FGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2509 H~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~s 2543 (2548)
+.. ...+.+.. ..+++.|+.+++|+.+.
T Consensus 375 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 375 TTT-------KSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp --------------------------------------
T ss_pred eEe-------ccccccccceeecccCccCceeecCCcc
Confidence 100 01222222 56788999999998753
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-23 Score=256.40 Aligned_cols=282 Identities=15% Similarity=0.174 Sum_probs=211.0
Q ss_pred EEEEEcCCCCEEE-EEECCCeEEEEEcCCCcee-EEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEE
Q 000054 2223 RAFSSHPLRPFFL-VGSSNTHIYLWEFGKDKAT-ATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2223 ~~VsfSPdG~~LA-SGS~DGsVrLWDl~tg~~l-~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWD 2299 (2548)
..++++|+...++ +|+.||.|+||++.+.... ..+. ...+|.+.|++++|+| ++++|++|+.||+|++||
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~-------~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~ 110 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVP-------LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCC-------CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEE
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCc-------eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEE
Confidence 3467778765444 5799999999999754322 1221 1234679999999999 999999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEEE--EcCCC-CEEEEEeccCCCCeEEEEECCCCCCCcceee--eccCCCeEEEEE
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSG-SVIAAAGHSSNGINVVVWDTLAPPTSSRASI--TCHEGGARSISV 2374 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdG-slLATgG~SS~DGtVrIWDl~t~~~k~v~sl--~gHs~~VtSLaf 2374 (2548)
+.+++... ........+.+|...|.+ |+|++ +++++++ .|+.|++||++. ++.+..+ .+|.+.|++++|
T Consensus 111 ~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~---~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~ 184 (402)
T 2aq5_A 111 IPDGGLVL-PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG---CDNVILVWDVGT--GAAVLTLGPDVHPDTIYSVDW 184 (402)
T ss_dssp CCTTCCSS-CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE---TTSCEEEEETTT--TEEEEEECTTTCCSCEEEEEE
T ss_pred ccCCCCcc-ccCCceEEecCCCCeEEEEEECcCCCCEEEEEc---CCCEEEEEECCC--CCccEEEecCCCCCceEEEEE
Confidence 98774321 111234557789988875 89998 6899986 899999999986 5677788 789999999999
Q ss_pred ccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCc--c---CCCCCceEEEc
Q 000054 2375 FDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGS--K---PGDQNGMLWYI 2449 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v--~---s~D~sv~Iwdi 2449 (2548)
+|+ +.+|++|+.||.|++||++ +++.+..+. ..+.......+.+++++.++ + ..++.+++|++
T Consensus 185 ~~~-------~~~l~~~~~d~~i~iwd~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~ 252 (402)
T 2aq5_A 185 SRD-------GALICTSCRDKRVRVIEPR---KGTVVAEKD--RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDT 252 (402)
T ss_dssp CTT-------SSCEEEEETTSEEEEEETT---TTEEEEEEE--CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEET
T ss_pred CCC-------CCEEEEEecCCcEEEEeCC---CCceeeeec--cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcC
Confidence 998 7899999999999999954 566665541 11222234567889999883 3 46888999996
Q ss_pred cc----------CCCCCEEEEEEeCCCCEEEE-EeCCCcEEEEECCCCcE-EEEecccccccccccCcccCCCCceeecE
Q 000054 2450 PK----------AHLGSVTRISTVPNTSLFLT-GSKDGDVKLWDAKAAQL-VYHWSKLHERHTFLQPSSRGFGGVVRAGV 2517 (2548)
Q Consensus 2450 ~~----------gH~~~VtsLafSPdG~~LaS-GS~DGtIrIWDl~Tgel-l~tL~~~Hs~hsfl~~tl~GH~~~V~a~V 2517 (2548)
.. .|...|.+++|+|++++|++ |+.||.|++||+.+++. +..+. . +. |. ..|
T Consensus 253 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~-~----------~~-~~----~~v 316 (402)
T 2aq5_A 253 KHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS-M----------FS-SK----ESQ 316 (402)
T ss_dssp TBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE-E----------EC-CS----SCC
T ss_pred ccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec-c----------cc-cC----Ccc
Confidence 33 46778999999999999965 55799999999998874 44441 0 11 22 235
Q ss_pred EEEEEcCCeEEEEECCCcEEEEECCCCc
Q 000054 2518 TDIQVVSRGFLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2518 tsLafSPdGLaSGS~DGtIrIWDL~sg~ 2545 (2548)
.+++|+|++...++.|+.+++|++.++.
T Consensus 317 ~~~~~sp~~~~~~s~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 317 RGMGYMPKRGLEVNKCEIARFYKLHERK 344 (402)
T ss_dssp SEEEECCGGGSCGGGTEEEEEEEEETTE
T ss_pred cceEEecccccceecceeEEEEEcCCCc
Confidence 6779999992223467899999998764
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-22 Score=282.65 Aligned_cols=271 Identities=15% Similarity=0.184 Sum_probs=222.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc--CCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH--YGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP--dG~~LaSGS~DGtVrVWD 2299 (2548)
+.+++|+|+|+++++|+.||+|++||+.+++.+..+.. |.+.|.+++|+| ++..+++|+.||.|++||
T Consensus 660 v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd 729 (1249)
T 3sfz_A 660 VLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE----------HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729 (1249)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC----------CSSCEEEEEECSSSSCCEEEEEETTSCEEEEE
T ss_pred EEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcC----------CCCcEEEEEEecCCCceEEEEEeCCCeEEEEE
Confidence 68999999999999999999999999999998888753 558999999999 566899999999999999
Q ss_pred cCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCC---------------------
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPT--------------------- 2356 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~--------------------- 2356 (2548)
+++++.. ..+.+|...|.+ |+|+++++++++ .||.|++||+.....
T Consensus 730 ~~~~~~~--------~~~~~h~~~v~~~~~sp~~~~l~s~s---~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1249)
T 3sfz_A 730 LNQKECR--------NTMFGHTNSVNHCRFSPDDELLASCS---ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVE 798 (1249)
T ss_dssp TTSSSEE--------EEECCCSSCEEEEEECSSTTEEEEEE---SSSEEEEEEGGGTEEEEEEECCCCC--------CCC
T ss_pred CCCcchh--------heecCCCCCEEEEEEecCCCEEEEEE---CCCeEEEEeCCCCcccceecccccccccCCcccccc
Confidence 9987543 346788888874 899999999986 899999999864210
Q ss_pred -------------------------------Ccceee-eccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCc
Q 000054 2357 -------------------------------SSRASI-TCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRY 2404 (2548)
Q Consensus 2357 -------------------------------k~v~sl-~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~ 2404 (2548)
.....+ .+|.+.|.+++|+|+ +.++++|+.||.|++||
T Consensus 799 ~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~-------~~~l~~~~~dg~v~vwd--- 868 (1249)
T 3sfz_A 799 VIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY-------DHLAVIALSQYCVELWN--- 868 (1249)
T ss_dssp CCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSS-------TTEEEEECSSSCEEEEE---
T ss_pred ceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCC-------CCEEEEEeCCCeEEEEE---
Confidence 001111 267889999999998 78999999999999999
Q ss_pred cccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEccc-------------------------------
Q 000054 2405 IATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIPK------------------------------- 2451 (2548)
Q Consensus 2405 l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~~------------------------------- 2451 (2548)
..++..+..+.. .......+.++|+|.. +++.|+.+++|+...
T Consensus 869 ~~~~~~~~~~~~----h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1249)
T 3sfz_A 869 IDSRLKVADCRG----HLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIR 944 (1249)
T ss_dssp TTTTEEEEEECC----CSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSS
T ss_pred cCCCceeeecCC----CccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCc
Confidence 556777666521 2234567889999987 677889999998431
Q ss_pred --------------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecE
Q 000054 2452 --------------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGV 2517 (2548)
Q Consensus 2452 --------------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~V 2517 (2548)
.+...+.+++|+|+++++++|+.||.|++||+.+++.+..+ .+|.+.|
T Consensus 945 ~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~--------------~~h~~~v---- 1006 (1249)
T 3sfz_A 945 GLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSG--------------VGHKKAV---- 1006 (1249)
T ss_dssp SEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEEC--------------CCCSSCC----
T ss_pred ceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeec--------------ccCCCce----
Confidence 13457999999999999999999999999999999887655 5777554
Q ss_pred EEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2518 TDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2518 tsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.+++|+|+| +++++.||+|++||+.++.
T Consensus 1007 ~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1036 (1249)
T 3sfz_A 1007 RHIQFTADGKTLISSSEDSVIQVWNWQTGD 1036 (1249)
T ss_dssp CCEEECSSSSCEEEECSSSBEEEEETTTTE
T ss_pred EEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence 556999999 9999999999999998864
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-21 Score=251.64 Aligned_cols=270 Identities=10% Similarity=0.087 Sum_probs=207.7
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCC---CeEEEEEccC-CCEEEEEeCCCcEE
Q 000054 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALA---SISALQFDHY-GHRFASAALDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~---~VtsVaFSPd-G~~LaSGS~DGtVr 2296 (2548)
+.+++|+|+++ ++++|+.||.|++||..+++.+..+.. |.+ .|++++|+|+ ++++++++.||.|+
T Consensus 163 v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 232 (615)
T 1pgu_A 163 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT----------HHKQGSFVRDVEFSPDSGEFVITVGSDRKIS 232 (615)
T ss_dssp EEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS----------SSCTTCCEEEEEECSTTCCEEEEEETTCCEE
T ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecc----------cCCCCceEEEEEECCCCCCEEEEEeCCCeEE
Confidence 78999999998 899999999999999999988877643 346 8999999999 99999999999999
Q ss_pred EEEcCCCcccccccCccceec-c---CCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc----C
Q 000054 2297 TWQLEVGGRSNVRPMESCLCF-S---SHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH----E 2366 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~-~---gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH----s 2366 (2548)
+||+++++... .+ . +|...|.+ ++ +++++++++ .|+.|++||++. .+.+..+..+ .
T Consensus 233 vwd~~~~~~~~--------~~~~~~~~~~~~v~~~~~~-~~~~l~~~~---~d~~i~~wd~~~--~~~~~~~~~~~~~~~ 298 (615)
T 1pgu_A 233 CFDGKSGEFLK--------YIEDDQEPVQGGIFALSWL-DSQKFATVG---ADATIRVWDVTT--SKCVQKWTLDKQQLG 298 (615)
T ss_dssp EEETTTCCEEE--------ECCBTTBCCCSCEEEEEES-SSSEEEEEE---TTSEEEEEETTT--TEEEEEEECCTTCGG
T ss_pred EEECCCCCEeE--------EecccccccCCceEEEEEc-CCCEEEEEc---CCCcEEEEECCC--CcEEEEEcCCCCccc
Confidence 99998876432 23 3 77777764 78 999999987 899999999986 5667777766 4
Q ss_pred CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCC---------------------------
Q 000054 2367 GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRG--------------------------- 2419 (2548)
Q Consensus 2367 ~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~--------------------------- 2419 (2548)
..+.++.+. + +..+++|+.||.|++||++ +++.+..+.....
T Consensus 299 ~~~~~~~~~-~-------~~~l~~~~~~g~i~~~d~~---~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~ 367 (615)
T 1pgu_A 299 NQQVGVVAT-G-------NGRIISLSLDGTLNFYELG---HDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSM 367 (615)
T ss_dssp GCEEEEEEE-E-------TTEEEEEETTSCEEEEETT---EEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEE
T ss_pred CceeEEEeC-C-------CCeEEEEECCCCEEEEECC---CCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhh
Confidence 678888875 3 5699999999999999964 3333333211000
Q ss_pred --CCCcccccc----------------------------------ccCCC------------------------------
Q 000054 2420 --GSSINTCAH----------------------------------ADAQT------------------------------ 2433 (2548)
Q Consensus 2420 --~s~~~~~~v----------------------------------afSpd------------------------------ 2433 (2548)
........+ +++++
T Consensus 368 ~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (615)
T 1pgu_A 368 HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS 447 (615)
T ss_dssp ECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred cCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCC
Confidence 000000011 11111
Q ss_pred --------CCC--ccCC-CCCceEEEcc---------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000054 2434 --------GSG--SKPG-DQNGMLWYIP---------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2434 --------Gk~--v~s~-D~sv~Iwdi~---------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
+.. ++.. ++.+++|++. .+|...|++++|+|++++|++|+.||.|++||+.+++.+..+
T Consensus 448 ~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~- 526 (615)
T 1pgu_A 448 PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR- 526 (615)
T ss_dssp CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC-
T ss_pred CceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEe-
Confidence 111 2233 7778888742 468899999999999999999999999999999999998765
Q ss_pred ccccccccccCcccC-CCCceeecEEEEEEcC----------Ce--EEEEECCCcEEEEECCCC
Q 000054 2494 KLHERHTFLQPSSRG-FGGVVRAGVTDIQVVS----------RG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2494 ~~Hs~hsfl~~tl~G-H~~~V~a~VtsLafSP----------dG--LaSGS~DGtIrIWDL~sg 2544 (2548)
.+ |.. .|++++|+| ++ |++|+.||+|++||++++
T Consensus 527 -------------~~~h~~----~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 527 -------------WAFRTS----KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp -------------SCCCSS----CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred -------------ecCCCC----ceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 44 654 457789999 88 899999999999999886
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.6e-22 Score=237.42 Aligned_cols=207 Identities=21% Similarity=0.282 Sum_probs=165.5
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcC--CCCEEEEEeccCCCC
Q 000054 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS--SGSVIAAAGHSSNGI 2344 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp--dGslLATgG~SS~DG 2344 (2548)
+|.+.|++++|+|+|++|++|+.||+|++||+..+.. .....+.+|...|.+ |++ ++++|++++ .|+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~------~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s---~D~ 77 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH------KLIDTLTGHEGPVWRVDWAHPKFGTILASCS---YDG 77 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB------CCCEEECCCSSCEEEEEECCGGGCSEEEEEE---TTT
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc------EEEEEEccccCCeEEEEecCCCcCCEEEEEc---CCC
Confidence 4679999999999999999999999999999975421 123457899999975 665 389999986 899
Q ss_pred eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcc
Q 000054 2345 NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSIN 2424 (2548)
Q Consensus 2345 tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~ 2424 (2548)
+|++||++.+....+..+.+|...|.+++|+|+. .+.+|++|+.||+|++||++. +.....
T Consensus 78 ~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~-----~g~~l~s~s~d~~v~~wd~~~---~~~~~~----------- 138 (297)
T 2pm7_B 78 KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHE-----YGPMLLVASSDGKVSVVEFKE---NGTTSP----------- 138 (297)
T ss_dssp EEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGG-----GCSEEEEEETTSEEEEEEBCS---SSCBCC-----------
T ss_pred EEEEEEcCCCceEEEEEeecCCCceeEEEeCcCC-----CCcEEEEEECCCcEEEEEecC---CCceee-----------
Confidence 9999999864334667788899999999999962 156999999999999999652 211000
Q ss_pred ccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCC-------------CCEEEEEeCCCcEEEEECCCCc----
Q 000054 2425 TCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPN-------------TSLFLTGSKDGDVKLWDAKAAQ---- 2487 (2548)
Q Consensus 2425 ~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPd-------------G~~LaSGS~DGtIrIWDl~Tge---- 2487 (2548)
..+.+|...|.+++|+|+ +++|++|+.||+|++||+++++
T Consensus 139 -----------------------~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~ 195 (297)
T 2pm7_B 139 -----------------------IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 195 (297)
T ss_dssp -----------------------EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEE
T ss_pred -----------------------eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEE
Confidence 012679999999999997 5799999999999999998765
Q ss_pred EEEEecccccccccccCcccCCCCceeecEEEEEEcCC---e--EEEEECCCcEEEEECCCC
Q 000054 2488 LVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSR---G--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2488 ll~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPd---G--LaSGS~DGtIrIWDL~sg 2544 (2548)
+..+ +.+|.+. |.+++|+|+ + |++|+.||+|++||++++
T Consensus 196 ~~~~--------------l~~H~~~----V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 196 LEST--------------LEGHSDW----VRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp EEEE--------------ECCCSSC----EEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred EEEE--------------ecCCCCc----eEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 3333 3788754 567799998 3 899999999999999764
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=9.4e-22 Score=247.94 Aligned_cols=237 Identities=9% Similarity=0.041 Sum_probs=170.6
Q ss_pred EEEEEEcC-CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSP-dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
|.+++|+| ++.+|++|+.||+|++||+.++... .+... ..+...+.+++|+|++++|++|+.||+|++||+
T Consensus 167 V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~ 238 (435)
T 4e54_B 167 ITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR-VFASS-------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNM 238 (435)
T ss_dssp CCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE-EEECC-------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEES
T ss_pred EEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee-EEecc-------CCCCccEEEEEECCCCCEEEEEeCCCcEeeecc
Confidence 48899998 6889999999999999999876443 33221 123467889999999999999999999999999
Q ss_pred CCCcccccccCccceeccCCcccEEE--EcCCCC-EEEEEeccCCCCeEEEEECCCCCCC-cceeeeccCCCeEEEEEcc
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGS-VIAAAGHSSNGINVVVWDTLAPPTS-SRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGs-lLATgG~SS~DGtVrIWDl~t~~~k-~v~sl~gHs~~VtSLafsP 2376 (2548)
+... ...+.+|...|.+ |+|++. ++++++ .|+.|++||++..... ......+|...|++++|+|
T Consensus 239 ~~~~---------~~~~~~h~~~v~~v~~~p~~~~~~~s~s---~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp 306 (435)
T 4e54_B 239 DGKE---------LWNLRMHKKKVTHVALNPCCDWFLATAS---VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP 306 (435)
T ss_dssp SSCB---------CCCSBCCSSCEEEEEECTTCSSEEEEEE---TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT
T ss_pred Ccce---------eEEEecccceEEeeeecCCCceEEEEec---CcceeeEEecccccccceEEEeeeccccccceeECC
Confidence 7432 1236788888875 888876 677775 8999999999863222 2344468999999999999
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCC--CC-----------ccccccccCCCCCC---ccCC
Q 000054 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGG--SS-----------INTCAHADAQTGSG---SKPG 2440 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~--s~-----------~~~~~vafSpdGk~---v~s~ 2440 (2548)
+ +.+|++|+.||.|++||++ ++++...+...... .. .....+.+++++.. .+..
T Consensus 307 d-------g~~l~s~~~D~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 376 (435)
T 4e54_B 307 D-------GARLLTTDQKSEIRVYSAS---QWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYE 376 (435)
T ss_dssp T-------SSEEEEEESSSCEEEEESS---SSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTC
T ss_pred C-------CCeeEEEcCCCEEEEEECC---CCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecC
Confidence 8 7899999999999999954 45554443111110 00 01112334555554 2233
Q ss_pred CCCceEEEc---------ccCCCCCEEEE-EEeCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000054 2441 DQNGMLWYI---------PKAHLGSVTRI-STVPNTSLFLTGSKDGDVKLWDAKAAQLV 2489 (2548)
Q Consensus 2441 D~sv~Iwdi---------~~gH~~~VtsL-afSPdG~~LaSGS~DGtIrIWDl~Tgell 2489 (2548)
++.+++|+. ..+|...|.++ +|+|+|++|++|+ |++|+|||+++++..
T Consensus 377 ~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 377 LRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp CCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred CCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 456889974 23688888887 6999999999886 889999999988754
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8.4e-22 Score=237.10 Aligned_cols=231 Identities=13% Similarity=0.101 Sum_probs=180.6
Q ss_pred EEEEEEcCC----CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEE
Q 000054 2222 TRAFSSHPL----RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPd----G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVr 2296 (2548)
+.+++|+|+ +++|++|+.||.|++||+.+++.+..+.. |.+.|++++|+| ++++|++|+.||.|+
T Consensus 72 v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~l~s~~~dg~i~ 141 (366)
T 3k26_A 72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVG----------HGNAINELKFHPRDPNLLLSVSKDHALR 141 (366)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEES----------CCSCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred EEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecC----------CCCcEEEEEECCCCCCEEEEEeCCCeEE
Confidence 588889898 67999999999999999999988877743 558999999999 899999999999999
Q ss_pred EEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee-----------
Q 000054 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT----------- 2363 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~----------- 2363 (2548)
+||+++++.... ...+.+|...|.+ |+|+++++++++ .||.|++||++. .+....+.
T Consensus 142 iwd~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~i~d~~~--~~~~~~~~~~~~~~~~~~~ 211 (366)
T 3k26_A 142 LWNIQTDTLVAI-----FGGVEGHRDEVLSADYDLLGEKIMSCG---MDHSLKLWRINS--KRMMNAIKESYDYNPNKTN 211 (366)
T ss_dssp EEETTTTEEEEE-----ECSTTSCSSCEEEEEECTTSSEEEEEE---TTSCEEEEESCS--HHHHHHHHHHHTCCGGGCS
T ss_pred EEEeecCeEEEE-----ecccccccCceeEEEECCCCCEEEEec---CCCCEEEEECCC--CccccccceeEEecCCCCc
Confidence 999998754321 1113678888874 889999999997 899999999975 33332222
Q ss_pred -----------------ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCcccc-----------Cceeeeec
Q 000054 2364 -----------------CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIAT-----------GKTKKHKH 2415 (2548)
Q Consensus 2364 -----------------gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~T-----------Gk~l~tl~ 2415 (2548)
+|.+.|.+++|+++ ++++++.||.|++||++.... ...+..+.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (366)
T 3k26_A 212 RPFISQKIHFPDFSTRDIHRNYVDCVRWLGD---------LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFD 282 (366)
T ss_dssp SCCCCEEECCCSEEECSSCSSCCCEEEEETT---------EEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEE
T ss_pred ccccceeeccCccccccCCcceEEEEEEcCC---------EEEEEecCCEEEEEeCCCccccccccccCCcchheecccc
Confidence 39999999999833 999999999999999653211 01122221
Q ss_pred CCCCCCCccccccccCCC--CCC--ccCCCCCceEEEcc------------cCC--CCCEEEEEEeCCCCEEEEEeCCCc
Q 000054 2416 SDRGGSSINTCAHADAQT--GSG--SKPGDQNGMLWYIP------------KAH--LGSVTRISTVPNTSLFLTGSKDGD 2477 (2548)
Q Consensus 2416 ~~~~~s~~~~~~vafSpd--Gk~--v~s~D~sv~Iwdi~------------~gH--~~~VtsLafSPdG~~LaSGS~DGt 2477 (2548)
. .......+.++++ |++ +++.++.+++|++. .+| ...|++++|+|++++|++|+.||.
T Consensus 283 ~----~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 358 (366)
T 3k26_A 283 Y----SQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDAS 358 (366)
T ss_dssp C----SSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE
T ss_pred c----cCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCE
Confidence 1 1123456778888 887 56778899999853 345 689999999999999999999999
Q ss_pred EEEEECCC
Q 000054 2478 VKLWDAKA 2485 (2548)
Q Consensus 2478 IrIWDl~T 2485 (2548)
|++||+.+
T Consensus 359 i~iwd~~~ 366 (366)
T 3k26_A 359 IWRWDRLR 366 (366)
T ss_dssp EEEEEC--
T ss_pred EEEEEecC
Confidence 99999853
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-20 Score=231.88 Aligned_cols=232 Identities=10% Similarity=0.079 Sum_probs=179.2
Q ss_pred EEEEEEcC-CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSP-dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
+.+++|+| ++.+|++|+.||.|++||+.+ .....+.... .|...|.+++|+|++++|++|+.||.|++||+
T Consensus 121 v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 192 (383)
T 3ei3_B 121 ITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTD-------SWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL 192 (383)
T ss_dssp EEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCC-------CSSCCEEEEEEETTTTEEEEEETTSEEEEEET
T ss_pred eeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccC-------CCCCCeEEEEECCCCCEEEEECCCCCEEEEEC
Confidence 58899999 789999999999999999985 4455554322 24588999999999999999999999999999
Q ss_pred CCCcccccccCccceeccCCcccEEE--EcCCCC-EEEEEeccCCCCeEEEEECCCCC--CCcceeeeccCCCeEEEEEc
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGS-VIAAAGHSSNGINVVVWDTLAPP--TSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGs-lLATgG~SS~DGtVrIWDl~t~~--~k~v~sl~gHs~~VtSLafs 2375 (2548)
+ ++. ...+.+|...|.+ |+|+++ ++++++ .|+.|++||++... ...+..+ +|.+.|++++|+
T Consensus 193 ~-~~~--------~~~~~~h~~~v~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s 259 (383)
T 3ei3_B 193 D-GHE--------IFKEKLHKAKVTHAEFNPRCDWLMATSS---VDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFN 259 (383)
T ss_dssp T-SCE--------EEEEECSSSCEEEEEECSSCTTEEEEEE---TTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEEC
T ss_pred C-CCE--------EEEeccCCCcEEEEEECCCCCCEEEEEe---CCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEc
Confidence 4 322 2346778888874 899998 888886 89999999998632 2344444 799999999999
Q ss_pred c-CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCC----CCC---------CccccccccCCCCCCccCCC
Q 000054 2376 D-NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDR----GGS---------SINTCAHADAQTGSGSKPGD 2441 (2548)
Q Consensus 2376 P-~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~----~~s---------~~~~~~vafSpdGk~v~s~D 2441 (2548)
| + +.+|++++.||.|++||++ +++....+.... .+. ......++++++|++.++.+
T Consensus 260 ~~~-------~~~l~~~~~d~~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d 329 (383)
T 3ei3_B 260 PTD-------STKLLTTDQRNEIRVYSSY---DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDK 329 (383)
T ss_dssp TTT-------SCEEEEEESSSEEEEEETT---BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCC
T ss_pred CCC-------CCEEEEEcCCCcEEEEECC---CCccccccccccccccccccceEEeccCCCCceEEEecCCcccccCCC
Confidence 9 6 7899999999999999965 343333321110 000 01122367788888877788
Q ss_pred CCceEEEcc--------cC--CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 000054 2442 QNGMLWYIP--------KA--HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2442 ~sv~Iwdi~--------~g--H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~T 2485 (2548)
+.+++|++. .+ |.+.+.+++|+|++++|++|+ ||.|++||+++
T Consensus 330 ~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 330 RTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred CeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 999999953 23 567788889999999999997 99999999874
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-20 Score=226.71 Aligned_cols=241 Identities=14% Similarity=0.242 Sum_probs=193.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC-----CcEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD-----GTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D-----GtVr 2296 (2548)
+.+++|+|++++|++++.||.|++||+.+++.+..+. |...|.+++|+|+++++++++.+ |.|+
T Consensus 77 v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~ 145 (369)
T 3zwl_B 77 IWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-----------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSIN 145 (369)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-----------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEE
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-----------cCCCeEEEEEccCCCEEEEecCCccCCCCEEE
Confidence 5889999999999999999999999999999888874 23789999999999999999999 9999
Q ss_pred EEEcCCCcccccc---cCccceeccCCcc--cEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe
Q 000054 2297 TWQLEVGGRSNVR---PMESCLCFSSHAM--DVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA 2369 (2548)
Q Consensus 2297 VWDl~tgk~i~i~---p~~s~~t~~gH~~--~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V 2369 (2548)
+||+..+...... .......+..|.. .+. +++|+++.+++++ .||.|++||++.. ...+..+..|...|
T Consensus 146 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~-~~~~~~~~~~~~~v 221 (369)
T 3zwl_B 146 IYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGH---KDGKISKYDVSNN-YEYVDSIDLHEKSI 221 (369)
T ss_dssp EEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEE---TTSEEEEEETTTT-TEEEEEEECCSSCE
T ss_pred EEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEc---CCCEEEEEECCCC-cEeEEEEecCCCce
Confidence 9999876432111 1112223344443 554 4899999999986 8999999999752 46778888999999
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCC-----
Q 000054 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQ----- 2442 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~----- 2442 (2548)
.+++|+|+ +.+|++++.||.|++|| +.+++.+..+. .......+.++|+++. ++..++
T Consensus 222 ~~~~~~~~-------~~~l~~~~~d~~i~v~d---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 286 (369)
T 3zwl_B 222 SDMQFSPD-------LTYFITSSRDTNSFLVD---VSTLQVLKKYE-----TDCPLNTAVITPLKEFIILGGGQEAKDVT 286 (369)
T ss_dssp EEEEECTT-------SSEEEEEETTSEEEEEE---TTTCCEEEEEE-----CSSCEEEEEECSSSSEEEEEECCC-----
T ss_pred eEEEECCC-------CCEEEEecCCceEEEEE---CCCCceeeeec-----CCCCceeEEecCCCceEEEeecCCCceEE
Confidence 99999998 78999999999999999 45667766653 2233456788999887 344444
Q ss_pred ---------CceEEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2443 ---------NGMLWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2443 ---------sv~Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
.+++|+. +.+|.+.|++++|+|++++|++|+.||.|++||++++.....+
T Consensus 287 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 353 (369)
T 3zwl_B 287 TTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDFKY 353 (369)
T ss_dssp --------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTCCC
T ss_pred EEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchhHH
Confidence 5788874 3579999999999999999999999999999999876654433
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-21 Score=243.68 Aligned_cols=216 Identities=13% Similarity=0.149 Sum_probs=160.0
Q ss_pred EEEEEEcCCC--CEEEEEECCCeEEEEEcCCCceeEEEeccCCCC------------------------------CCCCC
Q 000054 2222 TRAFSSHPLR--PFFLVGSSNTHIYLWEFGKDKATATYGVLPAAN------------------------------VPPPY 2269 (2548)
Q Consensus 2222 V~~VsfSPdG--~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs------------------------------~~~~~ 2269 (2548)
|.+++|+|++ .+|++|+.||+|++||+.++...........+. .-..+
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 5889999998 899999999999999988654321100000000 00235
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCc-ccccccCccceeccCCcccEEE--EcCCC-CEEEEEeccCCCCe
Q 000054 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGG-RSNVRPMESCLCFSSHAMDVSY--ITSSG-SVIAAAGHSSNGIN 2345 (2548)
Q Consensus 2270 H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk-~i~i~p~~s~~t~~gH~~~V~a--fSpdG-slLATgG~SS~DGt 2345 (2548)
|...|++++|+|++++|++| .||+|++||++++. ....... ....+.+|...|.+ |+|++ +++++++ .||.
T Consensus 176 h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~s~~---~dg~ 250 (447)
T 3dw8_B 176 HTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDI-KPANMEELTEVITAAEFHPNSCNTFVYSS---SKGT 250 (447)
T ss_dssp CSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEEC-CCSSGGGCCCCEEEEEECSSCTTEEEEEE---TTSC
T ss_pred CCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeec-ccccccccCcceEEEEECCCCCcEEEEEe---CCCe
Confidence 77999999999999999999 79999999998432 2211100 01136678888874 89998 8999986 8999
Q ss_pred EEEEECCCCCCCc----ceeeeccCC------------CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCc
Q 000054 2346 VVVWDTLAPPTSS----RASITCHEG------------GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGK 2409 (2548)
Q Consensus 2346 VrIWDl~t~~~k~----v~sl~gHs~------------~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk 2409 (2548)
|++||++. .+. +..+.+|.. .|.+++|+|+ +.+|++|+. |.|++||++. .++
T Consensus 251 i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-------g~~l~~~~~-~~v~iwd~~~--~~~ 318 (447)
T 3dw8_B 251 IRLCDMRA--SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS-------GRYMMTRDY-LSVKVWDLNM--ENR 318 (447)
T ss_dssp EEEEETTT--CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTT-------SSEEEEEES-SEEEEEETTC--CSS
T ss_pred EEEEECcC--CccccceeeEeccCCCccccccccccCceEEEEEECCC-------CCEEEEeeC-CeEEEEeCCC--Ccc
Confidence 99999986 333 677778776 9999999998 789999998 9999999642 144
Q ss_pred eeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCC---------------CEEEEEEeCCCCEEEEEeC
Q 000054 2410 TKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG---------------SVTRISTVPNTSLFLTGSK 2474 (2548)
Q Consensus 2410 ~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~---------------~VtsLafSPdG~~LaSGS~ 2474 (2548)
.+..+ .+|.. .+..++|+|++++|++|+.
T Consensus 319 ~~~~~------------------------------------~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~ 362 (447)
T 3dw8_B 319 PVETY------------------------------------QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSY 362 (447)
T ss_dssp CSCCE------------------------------------ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECS
T ss_pred cccee------------------------------------eccccccccccccccccccccceEEEECCCCCEEEEecc
Confidence 44443 22221 2345999999999999999
Q ss_pred CCcEEEEECCCCcEEE
Q 000054 2475 DGDVKLWDAKAAQLVY 2490 (2548)
Q Consensus 2475 DGtIrIWDl~Tgell~ 2490 (2548)
||.|++||+.+++.+.
T Consensus 363 dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 363 NNFFRMFDRNTKRDIT 378 (447)
T ss_dssp TTEEEEEETTTCCEEE
T ss_pred CCEEEEEEcCCCccee
Confidence 9999999999998864
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-22 Score=243.30 Aligned_cols=238 Identities=8% Similarity=-0.039 Sum_probs=177.1
Q ss_pred EcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccc
Q 000054 2227 SHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRS 2306 (2548)
Q Consensus 2227 fSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i 2306 (2548)
+.+++.++++|+.||+|++||+.+++.+..+.. ..|.++.|+|+ +++|+.||+|++|+.......
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~------------~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~ 108 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTITT------------PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITI 108 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEEE------------ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEec------------CCceeeeeCCc---eEEecCCCeEEEEEccCceEE
Confidence 345778999999999999999999998887752 56778888888 999999999999987632100
Q ss_pred c-cccCcccee-ccCCcccEEE--EcC--CCCEEEEEeccCCCCeEEEEECCCCCCCcceeee-ccCCCeEEEEEccCCC
Q 000054 2307 N-VRPMESCLC-FSSHAMDVSY--ITS--SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT-CHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2307 ~-i~p~~s~~t-~~gH~~~V~a--fSp--dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~-gHs~~VtSLafsP~dl 2379 (2548)
. ......... ..+|...|.+ ++| +++++++++ .||+|++||++. ++.+.... .|...+++++|+|+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s---~dg~i~~wd~~~--~~~~~~~~~~~~~~i~~~~~~pd-- 181 (343)
T 3lrv_A 109 LDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWAD---NRGTIGFQSYED--DSQYIVHSAKSDVEYSSGVLHKD-- 181 (343)
T ss_dssp EETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEE---TTCCEEEEESSS--SCEEEEECCCSSCCCCEEEECTT--
T ss_pred eecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEe---CCCcEEEEECCC--CcEEEEEecCCCCceEEEEECCC--
Confidence 0 000011111 2355566764 789 999999986 899999999986 45554443 45568999999998
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCcee-eeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccC-CCCCE
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTK-KHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKA-HLGSV 2457 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l-~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~g-H~~~V 2457 (2548)
+.++++|+.||.|++||++ +++.+ ..+ .+ |.+.|
T Consensus 182 -----g~~lasg~~dg~i~iwd~~---~~~~~~~~~------------------------------------~~~h~~~v 217 (343)
T 3lrv_A 182 -----SLLLALYSPDGILDVYNLS---SPDQASSRF------------------------------------PVDEEAKI 217 (343)
T ss_dssp -----SCEEEEECTTSCEEEEESS---CTTSCCEEC------------------------------------CCCTTSCE
T ss_pred -----CCEEEEEcCCCEEEEEECC---CCCCCccEE------------------------------------eccCCCCE
Confidence 7899999999999999954 44443 333 44 99999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEEC-CC
Q 000054 2458 TRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGG-DG 2534 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~-DG 2534 (2548)
++++|+|+|.+|++|+ |+.|++||+++++.+.++. .+.+|...+.. .+++|+|+| |++|+. |+
T Consensus 218 ~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~-----------~~~~~~~~~~~--~~~~~~~~g~~l~~~s~~d~ 283 (343)
T 3lrv_A 218 KEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYP-----------TYTIPEFKTGT--VTYDIDDSGKNMIAYSNESN 283 (343)
T ss_dssp EEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSC-----------CCBC-----CC--EEEEECTTSSEEEEEETTTT
T ss_pred EEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeec-----------ccccccccccc--eEEEECCCCCEEEEecCCCC
Confidence 9999999999999999 5599999999887665441 11223333322 457999999 888888 99
Q ss_pred cEEEEECCCC
Q 000054 2535 SVKLIQLEDY 2544 (2548)
Q Consensus 2535 tIrIWDL~sg 2544 (2548)
.|++|+++.+
T Consensus 284 ~i~v~~~~~~ 293 (343)
T 3lrv_A 284 SLTIYKFDKK 293 (343)
T ss_dssp EEEEEEECTT
T ss_pred cEEEEEEccc
Confidence 9999999654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-21 Score=241.77 Aligned_cols=233 Identities=18% Similarity=0.254 Sum_probs=192.0
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+|++++|++|+.||.|++||+.+++.+..+.. |.+.|.+++| +++.+++|+.||.|++||++
T Consensus 137 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~ 204 (401)
T 4aez_A 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG----------HQARVGCLSW--NRHVLSSGSRSGAIHHHDVR 204 (401)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC----------CSSCEEEEEE--ETTEEEEEETTSEEEEEETT
T ss_pred EEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecC----------CCCceEEEEE--CCCEEEEEcCCCCEEEEecc
Confidence 68999999999999999999999999999988877642 5589999999 46899999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
.... ....+.+|...|.+ ++|+++++++++ .|+.|++||++. .+.+..+..|...|.+++|+|++
T Consensus 205 ~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~d~~v~iwd~~~--~~~~~~~~~~~~~v~~~~~~p~~- 271 (401)
T 4aez_A 205 IANH-------QIGTLQGHSSEVCGLAWRSDGLQLASGG---NDNVVQIWDARS--SIPKFTKTNHNAAVKAVAWCPWQ- 271 (401)
T ss_dssp SSSC-------EEEEEECCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTC--SSEEEEECCCSSCCCEEEECTTS-
T ss_pred cCcc-------eeeEEcCCCCCeeEEEEcCCCCEEEEEe---CCCeEEEccCCC--CCccEEecCCcceEEEEEECCCC-
Confidence 5432 12346788888874 899999999997 899999999986 67788888999999999999974
Q ss_pred CCCCCCCEEEEEe--CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCc----cCCCCCceEEEcc---
Q 000054 2380 GSGSVSPLIVTGG--KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGS----KPGDQNGMLWYIP--- 2450 (2548)
Q Consensus 2380 g~gs~g~lLVSGS--~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v----~s~D~sv~Iwdi~--- 2450 (2548)
..++++|+ .||.|++|| +.+++.+..+.. ......+.++++++.+ +..++.+++|++.
T Consensus 272 -----~~ll~~~~gs~d~~i~i~d---~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~ 338 (401)
T 4aez_A 272 -----SNLLATGGGTMDKQIHFWN---AATGARVNTVDA-----GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG 338 (401)
T ss_dssp -----TTEEEEECCTTTCEEEEEE---TTTCCEEEEEEC-----SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTE
T ss_pred -----CCEEEEecCCCCCEEEEEE---CCCCCEEEEEeC-----CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCcc
Confidence 66888876 799999999 456777766621 2235678999999983 4468999999843
Q ss_pred -------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2451 -------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2451 -------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
.+|.+.|.+++|+|++++|++|+.||.|++||+.+++.+...
T Consensus 339 ~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 339 LTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred ceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 479999999999999999999999999999999999887654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-21 Score=243.62 Aligned_cols=263 Identities=12% Similarity=0.129 Sum_probs=193.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc---eeEEEeccCC------------------------------------
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK---ATATYGVLPA------------------------------------ 2262 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~---~l~t~~~l~g------------------------------------ 2262 (2548)
+.+++|+|+|++|+++ .++.|++||+.+|+ .+..+.....
T Consensus 7 ~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (450)
T 2vdu_B 7 LQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIK 85 (450)
T ss_dssp CCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------
T ss_pred EEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccc
Confidence 4678899999966655 57899999999998 5555542111
Q ss_pred --------CCCCCCCCCCCeEEEEEccCCCEE-EEEeCCCcEEEEEcC--CCcccccccCccceeccCCcccEE--EEcC
Q 000054 2263 --------ANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTWQLE--VGGRSNVRPMESCLCFSSHAMDVS--YITS 2329 (2548)
Q Consensus 2263 --------hs~~~~~H~~~VtsVaFSPdG~~L-aSGS~DGtVrVWDl~--tgk~i~i~p~~s~~t~~gH~~~V~--afSp 2329 (2548)
.....+.|.+.|++++|+|++++| ++|+.||+|++||+. +++..... ....|...|. +|+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~------~~~~~~~~v~~~~~sp 159 (450)
T 2vdu_B 86 RTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR------KRFCFSKRPNAISIAE 159 (450)
T ss_dssp --------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE------EEEECSSCEEEEEECT
T ss_pred ccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee------ecccCCCCceEEEEcC
Confidence 000012456689999999999996 899999999999998 66433211 0124556665 4899
Q ss_pred CCCEEEEEeccCCCCeEEEEECCCCCCC--cceeeeccCCCeEEEEEccC-CCCCCCCCCEEEEEeCCCcEEEEeCCccc
Q 000054 2330 SGSVIAAAGHSSNGINVVVWDTLAPPTS--SRASITCHEGGARSISVFDN-DLGSGSVSPLIVTGGKGGDVGIHDFRYIA 2406 (2548)
Q Consensus 2330 dGslLATgG~SS~DGtVrIWDl~t~~~k--~v~sl~gHs~~VtSLafsP~-dlg~gs~g~lLVSGS~DGtVrLWDLR~l~ 2406 (2548)
++++|++++ .||.|++||+...... ....+.+|.+.|++++|+|+ + .+.+|++|+.|+.|++||+ .
T Consensus 160 ~~~~l~~~~---~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-----~~~~l~s~~~d~~i~vwd~---~ 228 (450)
T 2vdu_B 160 DDTTVIIAD---KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSD-----GHQFIITSDRDEHIKISHY---P 228 (450)
T ss_dssp TSSEEEEEE---TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTT-----SCEEEEEEETTSCEEEEEE---S
T ss_pred CCCEEEEEe---CCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCC-----CCcEEEEEcCCCcEEEEEC---C
Confidence 999999986 8999999999763222 34477899999999999997 1 1469999999999999994 4
Q ss_pred cCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 000054 2407 TGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAA 2486 (2548)
Q Consensus 2407 TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tg 2486 (2548)
+++.+..+ ..+|.+.|++++|+ ++++|++|+.||+|++||++++
T Consensus 229 ~~~~~~~~-----------------------------------~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~ 272 (450)
T 2vdu_B 229 QCFIVDKW-----------------------------------LFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG 272 (450)
T ss_dssp CTTCEEEE-----------------------------------CCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTC
T ss_pred CCceeeee-----------------------------------ecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCC
Confidence 55555442 25799999999999 9999999999999999999999
Q ss_pred cEEEEecccccccccccCcccCCC----------CceeecEEEEEEcCCe--EEEEE-CCCcEEEEEC
Q 000054 2487 QLVYHWSKLHERHTFLQPSSRGFG----------GVVRAGVTDIQVVSRG--FLSCG-GDGSVKLIQL 2541 (2548)
Q Consensus 2487 ell~tL~~~Hs~hsfl~~tl~GH~----------~~V~a~VtsLafSPdG--LaSGS-~DGtIrIWDL 2541 (2548)
+++..+...+....+. +..|. ......|.+++|+|++ +++++ .|+.|++|++
T Consensus 273 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 273 KNLSTFDYNSLIKPYL---NDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CEEEEEECHHHHGGGC---CTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred cEeeeecchhhhhhhh---hhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 9998884221111110 00010 0112347888999999 77777 8999999999
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-21 Score=236.03 Aligned_cols=260 Identities=13% Similarity=0.161 Sum_probs=189.0
Q ss_pred eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCC-EEEEEeCCCcEEEEEc----CCCcc------ccc--
Q 000054 2242 HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGH-RFASAALDGTVCTWQL----EVGGR------SNV-- 2308 (2548)
Q Consensus 2242 sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~-~LaSGS~DGtVrVWDl----~tgk~------i~i-- 2308 (2548)
.+.+|++......... ..|.+.|++++|+|+++ +|++|+.||.|++||+ .+++. ...
T Consensus 26 ~~~~~~~~~~~~~~~~----------~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~ 95 (425)
T 1r5m_A 26 IDSSDDLDGFVKILKE----------IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELR 95 (425)
T ss_dssp --------CCCEECEE----------EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEE
T ss_pred ccccccchhhhhheee----------eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccc
Confidence 3567777654433222 12558999999999999 9999999999999999 77652 110
Q ss_pred ccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCC
Q 000054 2309 RPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSP 2386 (2548)
Q Consensus 2309 ~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~ 2386 (2548)
.+........+|...|.+ |+|++++|++++ .||.|++||.. ++.+..+.+|...|.+++|+|+ ++
T Consensus 96 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~i~~~~---~~~~~~~~~~~~~v~~~~~~~~-------~~ 162 (425)
T 1r5m_A 96 HPFALSASSGKTTNQVTCLAWSHDGNSIVTGV---ENGELRLWNKT---GALLNVLNFHRAPIVSVKWNKD-------GT 162 (425)
T ss_dssp CCCCCC------CBCEEEEEECTTSSEEEEEE---TTSCEEEEETT---SCEEEEECCCCSCEEEEEECTT-------SS
T ss_pred ccccccccccCCCCceEEEEEcCCCCEEEEEe---CCCeEEEEeCC---CCeeeeccCCCccEEEEEECCC-------CC
Confidence 010001112235667764 899999999987 89999999932 6778888999999999999998 78
Q ss_pred EEEEEeCCCcEEEEeCCccccCceeeeecCCCCCC-----------CccccccccCCCCCC-ccCCCCCceEEEcc----
Q 000054 2387 LIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGS-----------SINTCAHADAQTGSG-SKPGDQNGMLWYIP---- 2450 (2548)
Q Consensus 2387 lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s-----------~~~~~~vafSpdGk~-v~s~D~sv~Iwdi~---- 2450 (2548)
+|++++.||.|++|| +.+++.+..+....... ......+.+++++.+ ++..++.+++|++.
T Consensus 163 ~l~~~~~d~~i~iwd---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~ 239 (425)
T 1r5m_A 163 HIISMDVENVTILWN---VISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTP 239 (425)
T ss_dssp EEEEEETTCCEEEEE---TTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSC
T ss_pred EEEEEecCCeEEEEE---CCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCce
Confidence 999999999999999 45666666652221110 011455677777776 67788899999853
Q ss_pred ----cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe
Q 000054 2451 ----KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG 2526 (2548)
Q Consensus 2451 ----~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG 2526 (2548)
.+|...|.+++|+|++++|++++.||.|++||+++++.+..+ .+|.. .|.+++|+|++
T Consensus 240 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--------------~~~~~----~i~~~~~~~~~ 301 (425)
T 1r5m_A 240 TGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCF--------------YGHSQ----SIVSASWVGDD 301 (425)
T ss_dssp SEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEE--------------CCCSS----CEEEEEEETTT
T ss_pred eeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEe--------------cCCCc----cEEEEEECCCC
Confidence 478999999999999999999999999999999998877666 45654 35778999998
Q ss_pred -EEEEECCCcEEEEECCCCc
Q 000054 2527 -FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2527 -LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+++++.||.|++||+.++.
T Consensus 302 ~l~~~~~d~~i~i~d~~~~~ 321 (425)
T 1r5m_A 302 KVISCSMDGSVRLWSLKQNT 321 (425)
T ss_dssp EEEEEETTSEEEEEETTTTE
T ss_pred EEEEEeCCCcEEEEECCCCc
Confidence 8999999999999998764
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.88 E-value=8.1e-21 Score=238.07 Aligned_cols=234 Identities=17% Similarity=0.289 Sum_probs=189.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|.+++|+|+|++|++|+.||+|+|||+.+++.+..+.. |...|.++.++ +..+++|+.|+.+++||..
T Consensus 150 V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~----------h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~ 217 (420)
T 4gga_A 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS----------HSARVGSLSWN--SYILSSGSRSGHIHHHDVR 217 (420)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC----------CSSCEEEEEEE--TTEEEEEETTSEEEEEETT
T ss_pred EEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeC----------CCCceEEEeeC--CCEEEEEeCCCceeEeeec
Confidence 79999999999999999999999999999998887643 55889888875 7899999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCC--CcceeeeccCCCeEEEEEccC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPT--SSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~--k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
.... ....+.+|...+.. ++++++.+++++ .|+.|++||...... ..+.....|.+.|.+++|+|.
T Consensus 218 ~~~~-------~~~~~~~h~~~~~~~~~~~~g~~l~s~~---~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~ 287 (420)
T 4gga_A 218 VAEH-------HVATLSGHSQEVCGLRWAPDGRHLASGG---NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 287 (420)
T ss_dssp SSSC-------EEEEEECCSSCEEEEEECTTSSEEEEEE---TTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTT
T ss_pred ccce-------eeEEecccccceeeeeecCCCCeeeeee---ccccceEEeeccccccceeeeeecccCCceeeeeeCCC
Confidence 6532 22346788887764 899999999997 899999999976322 245677789999999999998
Q ss_pred CCCCCCCCCEEEEE--eCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--c--cCCCCCceEEEc--
Q 000054 2378 DLGSGSVSPLIVTG--GKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--S--KPGDQNGMLWYI-- 2449 (2548)
Q Consensus 2378 dlg~gs~g~lLVSG--S~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v--~s~D~sv~Iwdi-- 2449 (2548)
+ ..+++++ +.||+|++|| +.++++...+... .....+.+++++.. + +..++.+++|+.
T Consensus 288 ~------~~~la~~~gs~D~~I~iwd---~~t~~~~~~~~~~-----~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~ 353 (420)
T 4gga_A 288 Q------SNVLATGGGTSDRHIRIWN---VCSGACLSAVDAH-----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPT 353 (420)
T ss_dssp C------TTEEEEEECTTTCEEEEEE---TTTTEEEEEEECS-----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred c------ccEEEEEeecCCCEEEEEe---CCccccceeeccc-----cceeeeeecCCCCeEEEEEecCCCEEEEEECCC
Confidence 5 6677764 4799999999 5567777665221 23455677888776 2 346789999985
Q ss_pred ------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEE
Q 000054 2450 ------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYH 2491 (2548)
Q Consensus 2450 ------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~t 2491 (2548)
+.+|.+.|++++|+|+|++|+|||.||+|+|||+....+...
T Consensus 354 ~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~ 401 (420)
T 4gga_A 354 MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARR 401 (420)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC--
T ss_pred CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccch
Confidence 468999999999999999999999999999999987655443
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-21 Score=239.15 Aligned_cols=198 Identities=12% Similarity=0.059 Sum_probs=159.5
Q ss_pred EEEEEEcCCCCEEEEE--ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVG--SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASG--S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
+++++|+|||++++++ +.|++|+|||+.+++.+..+. |.+.|.+++|+|+|+++++++.| .+++|+
T Consensus 136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-----------~~~~V~~v~fspdg~~l~s~s~~-~~~~~~ 203 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-----------TRGEVKDLHFSTDGKVVAYITGS-SLEVIS 203 (365)
T ss_dssp EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-----------CSSCCCEEEECTTSSEEEEECSS-CEEEEE
T ss_pred EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-----------CCCceEEEEEccCCceEEeccce-eEEEEE
Confidence 6889999999998754 478999999999999887763 34779999999999999999855 566677
Q ss_pred cCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCC----eEEEEECCCCCCC--cceeeeccCCCeEE
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGI----NVVVWDTLAPPTS--SRASITCHEGGARS 2371 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DG----tVrIWDl~t~~~k--~v~sl~gHs~~VtS 2371 (2548)
..+++.... ....+|...|.+ |+|+++.+++++ .|+ .+++||+...... ....+.+|...|++
T Consensus 204 ~~~~~~~~~------~~~~~~~~~v~~v~fspdg~~l~~~s---~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~ 274 (365)
T 4h5i_A 204 TVTGSCIAR------KTDFDKNWSLSKINFIADDTVLIAAS---LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITS 274 (365)
T ss_dssp TTTCCEEEE------ECCCCTTEEEEEEEEEETTEEEEEEE---ESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEE
T ss_pred eccCcceee------eecCCCCCCEEEEEEcCCCCEEEEEe---cCCcceeEEeecccccceecceeeeeecCCCCCeEe
Confidence 666653321 224567777764 899999999986 444 6888888653222 23567789999999
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK 2451 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~ 2451 (2548)
++|+|+ +++|++|+.||+|+||| ..+++++..+ ..
T Consensus 275 ~~~Spd-------g~~lasgs~D~~V~iwd---~~~~~~~~~~-----------------------------------~~ 309 (365)
T 4h5i_A 275 MDVDMK-------GELAVLASNDNSIALVK---LKDLSMSKIF-----------------------------------KQ 309 (365)
T ss_dssp EEECTT-------SCEEEEEETTSCEEEEE---TTTTEEEEEE-----------------------------------TT
T ss_pred EEECCC-------CCceEEEcCCCEEEEEE---CCCCcEEEEe-----------------------------------cC
Confidence 999999 78999999999999999 5567776664 26
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 000054 2452 AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~T 2485 (2548)
+|...|++|+|+|||++|+|||.|++|+|||+..
T Consensus 310 gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 310 AHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp SSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred cccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 8999999999999999999999999999999964
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-20 Score=251.19 Aligned_cols=233 Identities=17% Similarity=0.159 Sum_probs=186.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+|++++|++|+.||.|++||+.+++.+..+.. |.+.|++++|+|++++|++|+.||+|++||++
T Consensus 58 v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~----------~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 127 (814)
T 3mkq_A 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA----------HPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127 (814)
T ss_dssp EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC----------CSSCEEEEEECSSSSEEEEEETTSEEEEEEGG
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEec----------CCCCEEEEEEeCCCCEEEEEcCCCEEEEEECC
Confidence 58999999999999999999999999999998887743 55889999999999999999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEE--EcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccC-CCeEEEEEccC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE-GGARSISVFDN 2377 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs-~~VtSLafsP~ 2377 (2548)
++... ...+.+|...|.+ |+| +++.+++++ .||.|++||+.. ......+..|. ..+.+++|+|.
T Consensus 128 ~~~~~-------~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~v~vwd~~~--~~~~~~~~~~~~~~v~~~~~~~~ 195 (814)
T 3mkq_A 128 NNWAL-------EQTFEGHEHFVMCVAFNPKDPSTFASGC---LDRTVKVWSLGQ--STPNFTLTTGQERGVNYVDYYPL 195 (814)
T ss_dssp GTSEE-------EEEEECCSSCEEEEEEETTEEEEEEEEE---TTSEEEEEETTC--SSCSEEEECCCTTCCCEEEECCS
T ss_pred CCceE-------EEEEcCCCCcEEEEEEEcCCCCEEEEEe---CCCeEEEEECCC--CcceeEEecCCCCCEEEEEEEEC
Confidence 76321 2346678877764 888 788999986 899999999976 45555555544 89999999993
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEcc-----
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIP----- 2450 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~----- 2450 (2548)
. .+.++++|+.||.|++|| ..+++.+..+... ......+.++|+|.. +++.++.+++|+..
T Consensus 196 ~-----~~~~l~~~~~dg~i~~~d---~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~ 263 (814)
T 3mkq_A 196 P-----DKPYMITASDDLTIKIWD---YQTKSCVATLEGH----MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263 (814)
T ss_dssp T-----TCCEEEEECTTSEEEEEE---TTTTEEEEEEECC----SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEE
T ss_pred C-----CCCEEEEEeCCCEEEEEE---CCCCcEEEEEcCC----CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 1 178999999999999999 4556766665221 223567789999987 66778999999853
Q ss_pred ---cCCCCCEEEEEEeCCCC--EEEEEeCCCcEEEEECCCCcEE
Q 000054 2451 ---KAHLGSVTRISTVPNTS--LFLTGSKDGDVKLWDAKAAQLV 2489 (2548)
Q Consensus 2451 ---~gH~~~VtsLafSPdG~--~LaSGS~DGtIrIWDl~Tgell 2489 (2548)
..|...|.+++|+|++. +++++ .|+.+.+|++..+...
T Consensus 264 ~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 306 (814)
T 3mkq_A 264 KTLNVGLERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPT 306 (814)
T ss_dssp EEECCSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCC
T ss_pred EEeecCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCce
Confidence 35788999999999987 45555 5777889998755433
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.6e-22 Score=239.77 Aligned_cols=208 Identities=20% Similarity=0.286 Sum_probs=161.2
Q ss_pred CCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcC--CCCEEEEEeccCCC
Q 000054 2268 PYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS--SGSVIAAAGHSSNG 2343 (2548)
Q Consensus 2268 ~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp--dGslLATgG~SS~D 2343 (2548)
.+|.+.|++++|+|+|++|++|+.||+|++||+++++.. ....+.+|...|.+ |++ ++++|++++ .|
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~------~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s---~D 80 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI------LIADLRGHEGPVWQVAWAHPMYGNILASCS---YD 80 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE------EEEEEECCSSCEEEEEECCGGGSSCEEEEE---TT
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE------EEEEEcCCCccEEEEEeCCCCCCCEEEEEE---CC
Confidence 357799999999999999999999999999999876421 12347799998875 655 488999986 89
Q ss_pred CeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCc
Q 000054 2344 INVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSI 2423 (2548)
Q Consensus 2344 GtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~ 2423 (2548)
++|++||++.+.......+.+|.+.|++++|+|+. .+.+|++|+.||+|++||++ .+......
T Consensus 81 ~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~-----~g~~lasgs~D~~i~lwd~~---~~~~~~~~--------- 143 (316)
T 3bg1_A 81 RKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHD-----YGLILACGSSDGAISLLTYT---GEGQWEVK--------- 143 (316)
T ss_dssp SCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTT-----TCSCEEEECSSSCEEEEEEC---SSSCEEEC---------
T ss_pred CEEEEEECCCCcceEEEEccCCCCceEEEEECCCC-----CCcEEEEEcCCCCEEEEecC---CCCCccee---------
Confidence 99999999864334667788999999999999972 25699999999999999954 22111100
Q ss_pred cccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCC-----------------CCEEEEEeCCCcEEEEECCCC
Q 000054 2424 NTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPN-----------------TSLFLTGSKDGDVKLWDAKAA 2486 (2548)
Q Consensus 2424 ~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPd-----------------G~~LaSGS~DGtIrIWDl~Tg 2486 (2548)
....+|...|.+++|+|+ +++|++|+.||+|++||++.+
T Consensus 144 ------------------------~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~ 199 (316)
T 3bg1_A 144 ------------------------KINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED 199 (316)
T ss_dssp ------------------------CBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT
T ss_pred ------------------------eeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC
Confidence 112567778888888886 479999999999999999755
Q ss_pred c---EEEEecccccccccccCcccCCCCceeecEEEEEEcCCe------EEEEECCCcEEEEECCC
Q 000054 2487 Q---LVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG------FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2487 e---ll~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG------LaSGS~DGtIrIWDL~s 2543 (2548)
. ++.+ +.+|.+. |.+++|+|++ |++|+.||+|++|++++
T Consensus 200 ~~~~~~~~--------------l~~h~~~----V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 200 GQWKEEQK--------------LEAHSDW----VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp SCEEEEEC--------------CBCCSSC----EEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred Cccceeee--------------cccCCCc----eEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence 2 3332 4788754 4677999974 99999999999999876
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-20 Score=219.18 Aligned_cols=248 Identities=17% Similarity=0.149 Sum_probs=168.8
Q ss_pred EEEEEEcC--CCCEEEEEECCCeEEEEEcCCCc---------eeEEEeccCCCCCCCCCCCCCeEEEEEccC--CCEEEE
Q 000054 2222 TRAFSSHP--LRPFFLVGSSNTHIYLWEFGKDK---------ATATYGVLPAANVPPPYALASISALQFDHY--GHRFAS 2288 (2548)
Q Consensus 2222 V~~VsfSP--dG~~LASGS~DGsVrLWDl~tg~---------~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd--G~~LaS 2288 (2548)
+.+++|+| ++.+|++|+.||.|++||+.+++ .+..+ . .|.+.|.+++|+|+ ++++++
T Consensus 60 v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~---~-------~~~~~v~~~~~~~~~~~~~l~~ 129 (351)
T 3f3f_A 60 IVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTL---N-------DSKGSLYSVKFAPAHLGLKLAC 129 (351)
T ss_dssp EEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEE---C-------CCSSCEEEEEECCGGGCSEEEE
T ss_pred EEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeee---c-------ccCCceeEEEEcCCCCCcEEEE
Confidence 68999999 69999999999999999998763 23333 2 25589999999999 999999
Q ss_pred EeCCCcEEEEEcCCCcccccccCcc-----ceeccCCcccEEE--EcCC---CCEEEEEeccCCCCeEEEEECCCCCCCc
Q 000054 2289 AALDGTVCTWQLEVGGRSNVRPMES-----CLCFSSHAMDVSY--ITSS---GSVIAAAGHSSNGINVVVWDTLAPPTSS 2358 (2548)
Q Consensus 2289 GS~DGtVrVWDl~tgk~i~i~p~~s-----~~t~~gH~~~V~a--fSpd---GslLATgG~SS~DGtVrIWDl~t~~~k~ 2358 (2548)
|+.||.|++||+++++......... .....+|...+.+ ++|+ +..+++++ .|+.+.+|+........
T Consensus 130 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~ 206 (351)
T 3f3f_A 130 LGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA---LEQAIIYQRGKDGKLHV 206 (351)
T ss_dssp EETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE---TTEEEEEEECTTSCEEE
T ss_pred ecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEec---CCCcEEEEccCCCceee
Confidence 9999999999998876432211000 0011245555553 7886 88999987 88999888876532334
Q ss_pred ceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--
Q 000054 2359 RASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-- 2436 (2548)
Q Consensus 2359 v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-- 2436 (2548)
+..+.+|.+.|++++|+|+. +....+|++|+.||.|++||++. +......... .........++....
T Consensus 207 ~~~~~~h~~~i~~~~~~p~~---~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 276 (351)
T 3f3f_A 207 AAKLPGHKSLIRSISWAPSI---GRWYQLIATGCKDGRIRIFKITE---KLSPLASEES----LTNSNMFDNSADVDMDA 276 (351)
T ss_dssp EEECCCCCSCEEEEEECCCS---SCSSEEEEEEETTSCEEEEEEEE---CC-----------------------------
T ss_pred eeecCCCCcceeEEEECCCC---CCcceEEEEEcCCCeEEEEeCCC---CcCccccCCc----ccceeccCCCccccccc
Confidence 77888999999999999982 00016999999999999999653 2222111000 000011111111111
Q ss_pred ----ccCCCCC--------ceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2437 ----SKPGDQN--------GMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2437 ----v~s~D~s--------v~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
....... ......+.+|.+.|++++|+|++++|++|+.||.|++||+.+++.+..+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 277 QGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp --------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred ccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 1111111 2333456789999999999999999999999999999999988766555
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.87 E-value=6.9e-21 Score=233.46 Aligned_cols=242 Identities=12% Similarity=0.121 Sum_probs=186.1
Q ss_pred EEEEEEcCC----C---CEEEEEECCCeEEEEEcCCCce-----eEEEeccCCCCCCCCCCCCCeEEEEEc----cCCCE
Q 000054 2222 TRAFSSHPL----R---PFFLVGSSNTHIYLWEFGKDKA-----TATYGVLPAANVPPPYALASISALQFD----HYGHR 2285 (2548)
Q Consensus 2222 V~~VsfSPd----G---~~LASGS~DGsVrLWDl~tg~~-----l~t~~~l~ghs~~~~~H~~~VtsVaFS----PdG~~ 2285 (2548)
+.+++|+|+ + .+|++|+.||.|++||+.+++. ...+..+..+ .+...|.+++|+ |++++
T Consensus 65 v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~ 139 (397)
T 1sq9_A 65 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD-----MKKHSFWALKWGASNDRLLSH 139 (397)
T ss_dssp EEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTT-----GGGSCEEEEEEECCC----CE
T ss_pred EEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccc-----cCCCcEEEEEEeeccCCCCce
Confidence 588999999 9 9999999999999999998876 6665432211 004889999999 99999
Q ss_pred -EEEEeCCCcEEEEEcCC------CcccccccCccceec-------cCCcccEE--EEcCCCCEEEEEeccCCCCeEEEE
Q 000054 2286 -FASAALDGTVCTWQLEV------GGRSNVRPMESCLCF-------SSHAMDVS--YITSSGSVIAAAGHSSNGINVVVW 2349 (2548)
Q Consensus 2286 -LaSGS~DGtVrVWDl~t------gk~i~i~p~~s~~t~-------~gH~~~V~--afSpdGslLATgG~SS~DGtVrIW 2349 (2548)
|++|+.||.|++||+++ ++.....+ ...+ ..|...|. .++|++ ++++++ .|+.|++|
T Consensus 140 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~---~dg~i~i~ 212 (397)
T 1sq9_A 140 RLVATDVKGTTYIWKFHPFADESNSLTLNWSP---TLELQGTVESPMTPSQFATSVDISERG-LIATGF---NNGTVQIS 212 (397)
T ss_dssp EEEEEETTSCEEEEEEESSSSHHHHTTTCCCC---EEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC---TTSEEEEE
T ss_pred EEEEEeCCCcEEEEeCCccccccccceeeccC---cceeeeeeccccCCCCCceEEEECCCc-eEEEEe---CCCcEEEE
Confidence 99999999999999987 54332111 1123 34566555 489999 888885 89999999
Q ss_pred ECCCCCCCcceeeec---c---CCCeEEEEEccCCCCCCCCCCEEEEEeCC---CcEEEEeCCccccCceeeeecCCCC-
Q 000054 2350 DTLAPPTSSRASITC---H---EGGARSISVFDNDLGSGSVSPLIVTGGKG---GDVGIHDFRYIATGKTKKHKHSDRG- 2419 (2548)
Q Consensus 2350 Dl~t~~~k~v~sl~g---H---s~~VtSLafsP~dlg~gs~g~lLVSGS~D---GtVrLWDLR~l~TGk~l~tl~~~~~- 2419 (2548)
|++. .+.+..+.. | ...|.+++|+|+ +.+|++|+.| |.|++||+ .+++.+..+.....
T Consensus 213 d~~~--~~~~~~~~~~~~h~~~~~~i~~i~~~~~-------~~~l~~~~~d~~~g~i~i~d~---~~~~~~~~~~~~~~~ 280 (397)
T 1sq9_A 213 ELST--LRPLYNFESQHSMINNSNSIRSVKFSPQ-------GSLLAIAHDSNSFGCITLYET---EFGERIGSLSVPTHS 280 (397)
T ss_dssp ETTT--TEEEEEEECCC---CCCCCEEEEEECSS-------TTEEEEEEEETTEEEEEEEET---TTCCEEEEECBC---
T ss_pred ECCC--CceeEEEeccccccccCCccceEEECCC-------CCEEEEEecCCCCceEEEEEC---CCCcccceeccCccc
Confidence 9986 677888888 9 999999999998 7899999999 99999995 45676666532100
Q ss_pred --------CCCccccccccCCCCCC--ccCCCCCceEEEc--------cc------CC---------------CCCEEEE
Q 000054 2420 --------GSSINTCAHADAQTGSG--SKPGDQNGMLWYI--------PK------AH---------------LGSVTRI 2460 (2548)
Q Consensus 2420 --------~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi--------~~------gH---------------~~~VtsL 2460 (2548)
........+.++|++++ +++.++.+++|++ +. +| ...|+++
T Consensus 281 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~ 360 (397)
T 1sq9_A 281 SQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV 360 (397)
T ss_dssp -----CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE
T ss_pred ccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEE
Confidence 02234567889999988 5667888999985 34 67 8999999
Q ss_pred EEeCCC----------CEEEEEeCCCcEEEEECCCCc
Q 000054 2461 STVPNT----------SLFLTGSKDGDVKLWDAKAAQ 2487 (2548)
Q Consensus 2461 afSPdG----------~~LaSGS~DGtIrIWDl~Tge 2487 (2548)
+|+|++ ++|++|+.||.|++||+++|+
T Consensus 361 ~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 361 KFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp EEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred EeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 999998 799999999999999998764
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-20 Score=232.96 Aligned_cols=243 Identities=12% Similarity=0.138 Sum_probs=171.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEE-EEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~L-aSGS~DGtVrVWDl 2300 (2548)
|.+++|+|+|++|++|+.|| ++|||..+++...... ...+..+++.++++.+ ++|+.|++|++||+
T Consensus 22 V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~ 88 (355)
T 3vu4_A 22 VTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE------------MRHLSKVRMLHRTNYVAFVTGVKEVVHIWDD 88 (355)
T ss_dssp CCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE------------CSCCCEEEECTTSSEEEEECSSTTEEEEEET
T ss_pred eEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee------------cCCeEEEEEcCCCCEEEEEECCccEEEEEEC
Confidence 68999999999999998775 7899998876654432 1347788999988877 56788899999999
Q ss_pred CCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCC
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLG 2380 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg 2380 (2548)
.+++.+.. +. +...|.++..+.+.++++ .|+.|++||+... .+.+..+.. ....+++++.
T Consensus 89 ~~~~~~~~--------~~-~~~~v~~v~~~~~~~~~~----~~~~i~i~d~~~~-~~~~~~~~~---~~~~~~~s~~--- 148 (355)
T 3vu4_A 89 VKKQDVSR--------IK-VDAPVKDLFLSREFIVVS----YGDVISVFKFGNP-WKRITDDIR---FGGVCEFSNG--- 148 (355)
T ss_dssp TTTEEEEE--------EE-CSSCEEEEEECSSEEEEE----ETTEEEEEESSTT-CCBSSCCEE---EEEEEEEETT---
T ss_pred CCCcEEEE--------EE-CCCceEEEEEcCCEEEEE----EcCEEEEEECCCC-ceeeEEecc---CCceEEEEcc---
Confidence 98864321 22 344666544444556665 3789999999862 145555544 3334455553
Q ss_pred CCCCCCEEEE--EeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceE-EEcccCCCCCE
Q 000054 2381 SGSVSPLIVT--GGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGML-WYIPKAHLGSV 2457 (2548)
Q Consensus 2381 ~gs~g~lLVS--GS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~I-wdi~~gH~~~V 2457 (2548)
.++. |+.||.|++||++ +++........ . ......- ...+.+|.+.|
T Consensus 149 ------~la~~sg~~~g~v~iwd~~---~~~~~~~~~~~-~--------------------~~~~~~p~~~~~~~h~~~v 198 (355)
T 3vu4_A 149 ------LLVYSNEFNLGQIHITKLQ---SSGSATTQDQG-V--------------------QQKAILGKGVLIKAHTNPI 198 (355)
T ss_dssp ------EEEEEESSCTTCEEEEECC---C---------------------------------------CCEEECCCSSCE
T ss_pred ------EEEEeCCCcCcEEEEEECC---CCCcccccccc-c--------------------cccccCcccEEEEccCCce
Confidence 5665 6899999999954 33211110000 0 0000000 12347899999
Q ss_pred EEEEEeCCCCEEEEEeCCCc-EEEEECCCCcEEEEecccccccccccCcccC-CCCceeecEEEEEEcCCe--EEEEECC
Q 000054 2458 TRISTVPNTSLFLTGSKDGD-VKLWDAKAAQLVYHWSKLHERHTFLQPSSRG-FGGVVRAGVTDIQVVSRG--FLSCGGD 2533 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS~DGt-IrIWDl~Tgell~tL~~~Hs~hsfl~~tl~G-H~~~V~a~VtsLafSPdG--LaSGS~D 2533 (2548)
++++|+|+|++|++|+.||+ |++||+++++++.++. .| |.+ .|.+++|+|+| |++|+.|
T Consensus 199 ~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~-------------~g~h~~----~v~~~~~s~~~~~l~s~s~d 261 (355)
T 3vu4_A 199 KMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFR-------------RGLDRA----DVVDMKWSTDGSKLAVVSDK 261 (355)
T ss_dssp EEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEE-------------CTTCCS----CEEEEEECTTSCEEEEEETT
T ss_pred EEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE-------------cCCCCC----cEEEEEECCCCCEEEEEECC
Confidence 99999999999999999998 9999999999998872 24 653 45778999999 8999999
Q ss_pred CcEEEEECCCC
Q 000054 2534 GSVKLIQLEDY 2544 (2548)
Q Consensus 2534 GtIrIWDL~sg 2544 (2548)
|+|++||+.++
T Consensus 262 ~~v~iw~~~~~ 272 (355)
T 3vu4_A 262 WTLHVFEIFND 272 (355)
T ss_dssp CEEEEEESSCC
T ss_pred CEEEEEEccCC
Confidence 99999999765
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-21 Score=245.45 Aligned_cols=281 Identities=14% Similarity=0.143 Sum_probs=198.2
Q ss_pred EcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCcc
Q 000054 2227 SHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAALDGTVCTWQLEVGGR 2305 (2548)
Q Consensus 2227 fSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~DGtVrVWDl~tgk~ 2305 (2548)
|+|++..+++++ .|+ .+++.+..+. .+|.+.|++++|+| ++++|++|+.||+|++||+.+...
T Consensus 35 f~~~~~~~~~~~------~w~-~~g~~~~~~~---------~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~ 98 (437)
T 3gre_A 35 FGPIQEIVRSPN------MGN-LRGKLIATLM---------ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIV 98 (437)
T ss_dssp GCCCCCCCCCCC------GGG-CCCCEEEEEC---------TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHT
T ss_pred cCCccccccccc------ccc-ccceEEeeec---------cCCCCceEEEEECCCCCCEEEEecCCceEEEeECccccc
Confidence 457777777654 366 4566666651 23669999999999 999999999999999999976211
Q ss_pred cccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCC-CCCcceeeec------------cCCCeE
Q 000054 2306 SNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAP-PTSSRASITC------------HEGGAR 2370 (2548)
Q Consensus 2306 i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~-~~k~v~sl~g------------Hs~~Vt 2370 (2548)
.. .......+ +|...|.+ |+|+++++++++ .||.|++||+... .++....+.+ +...+.
T Consensus 99 ~~--~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s---~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 172 (437)
T 3gre_A 99 GE--VYSSSLTY-DCSSTVTQITMIPNFDAFAVSS---KDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAV 172 (437)
T ss_dssp TC--CCSCSEEE-ECSSCEEEEEECTTSSEEEEEE---TTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEE
T ss_pred Cc--ccceeeec-cCCCCEEEEEEeCCCCEEEEEe---CCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCce
Confidence 10 01111222 47777874 899999999997 8999999999521 1333333332 445566
Q ss_pred EEEEc--cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceE
Q 000054 2371 SISVF--DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGML 2446 (2548)
Q Consensus 2371 SLafs--P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~I 2446 (2548)
++.+. ++ +.++++|+.||.|++||+ .+++.+..+.... .......++++|++.+ +++.|+.+++
T Consensus 173 ~~~~~~~~~-------~~~l~~~~~d~~i~iwd~---~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~dg~i~i 240 (437)
T 3gre_A 173 RMRAFVNEE-------KSLLVALTNLSRVIIFDI---RTLERLQIIENSP--RHGAVSSICIDEECCVLILGTTRGIIDI 240 (437)
T ss_dssp EEEEEECSS-------CEEEEEEETTSEEEEEET---TTCCEEEEEECCG--GGCCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred EEEEEEcCC-------CCEEEEEeCCCeEEEEeC---CCCeeeEEEccCC--CCCceEEEEECCCCCEEEEEcCCCeEEE
Confidence 66633 34 679999999999999994 5577776663210 1224567889999987 6788899999
Q ss_pred EEcc--------c-CCCCCEEEEEEeC----CCCEEEEEeCCCcEEEEECCCCcEEEEecccccccc----------ccc
Q 000054 2447 WYIP--------K-AHLGSVTRISTVP----NTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHT----------FLQ 2503 (2548)
Q Consensus 2447 wdi~--------~-gH~~~VtsLafSP----dG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hs----------fl~ 2503 (2548)
|++. . +|...|++++|+| ++.+|++|+.||.|++||+++++++..+........ +..
T Consensus 241 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 320 (437)
T 3gre_A 241 WDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEE 320 (437)
T ss_dssp EETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGG
T ss_pred EEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccccc
Confidence 9852 2 6778999996665 678999999999999999999999988852111100 000
Q ss_pred CcccC--CCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCCc
Q 000054 2504 PSSRG--FGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2504 ~tl~G--H~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg~ 2545 (2548)
..+.+ |.+. |++++|+++. |++|+.||+|++||+.++.
T Consensus 321 ~~~~~~~~~~~----v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 321 LNFCGIRSLNA----LSTISVSNDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp CCCCCCCSGGG----GCCEEEETTEEEEEEGGGTEEEEEETTCGG
T ss_pred ceecccccCCc----eEEEEECCceEEEecCCCCeEEEEECCCcc
Confidence 11334 5543 4667899554 8999999999999998764
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-20 Score=259.14 Aligned_cols=259 Identities=12% Similarity=0.054 Sum_probs=188.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|.+++|+|++++||+|+.||+|+||+..+++....+ .|...|++++|+| |++|++++.|++|++||++
T Consensus 20 V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-----------~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~ 87 (902)
T 2oaj_A 20 PIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-----------EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLY 87 (902)
T ss_dssp EEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-----------SSCCCEEEEEEET-TTEEEEEETTCEEEEEETT
T ss_pred cEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-----------CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECC
Confidence 699999999999999999999999998877654442 1457899999999 8899999999999999999
Q ss_pred CCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcc-----------eeeeccCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR-----------ASITCHEGG 2368 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v-----------~sl~gHs~~ 2368 (2548)
+++.... +. |...|. +|+|+++++++|+ .||.|++||++.. +.. ..+.+|.+.
T Consensus 88 ~~~~~~~--------~~-~~~~V~~v~~sp~g~~l~sgs---~dg~V~lwd~~~~--~~~~~~i~~~~~~~~~~~~h~~~ 153 (902)
T 2oaj_A 88 SQKVLTT--------VF-VPGKITSIDTDASLDWMLIGL---QNGSMIVYDIDRD--QLSSFKLDNLQKSSFFPAARLSP 153 (902)
T ss_dssp TCSEEEE--------EE-CSSCEEEEECCTTCSEEEEEE---TTSCEEEEETTTT--EEEEEEECCHHHHHTCSSSCCCC
T ss_pred CCcEEEE--------Ec-CCCCEEEEEECCCCCEEEEEc---CCCcEEEEECCCC--ccccceeccccccccccccCCCC
Confidence 8764321 22 445565 4899999999986 8999999999762 221 234679999
Q ss_pred eEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEE
Q 000054 2369 ARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWY 2448 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwd 2448 (2548)
|++++|+|++ +..+++|+.||.| +||+ .+++.+..+....... .+.+ +... .
T Consensus 154 V~sl~~sp~~------~~~l~~g~~dg~v-lWd~---~~~~~~~~~~~~~~~g---------~~~~------~~~~---~ 205 (902)
T 2oaj_A 154 IVSIQWNPRD------IGTVLISYEYVTL-TYSL---VENEIKQSFIYELPPF---------APGG------DFSE---K 205 (902)
T ss_dssp CCEEEEETTE------EEEEEEECSSCEE-EEET---TTTEEEEEECCCBCTT---------CCCS------TTCC---C
T ss_pred eEEEEEccCC------CCEEEEEeCCCcE-EEEC---CCCceEEEEecccCCc---------CCCc------cccc---c
Confidence 9999999974 5689999999999 9995 4566666652110000 0000 0000 2
Q ss_pred cccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEE--ecc--cccccccccCccc---CCCCceeecEEEEE
Q 000054 2449 IPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYH--WSK--LHERHTFLQPSSR---GFGGVVRAGVTDIQ 2521 (2548)
Q Consensus 2449 i~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~t--L~~--~Hs~hsfl~~tl~---GH~~~V~a~VtsLa 2521 (2548)
...+|...|++++|+|+|++|++|+.||+|++||+++++++.. +.. .|..... ... .|. ..|++++
T Consensus 206 ~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~---~~~~~~~~~----~~V~~v~ 278 (902)
T 2oaj_A 206 TNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPD---YIRDSSTNA----AKISKVY 278 (902)
T ss_dssp TTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTT---CCCCCSSCC----CEEEEEE
T ss_pred cccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCc---CCCCCcccc----CCeeEEE
Confidence 3356888999999999999999999999999999999998764 210 0110000 000 122 3467778
Q ss_pred E----cCCe---EEEEECC-----CcEEEEEC
Q 000054 2522 V----VSRG---FLSCGGD-----GSVKLIQL 2541 (2548)
Q Consensus 2522 f----SPdG---LaSGS~D-----GtIrIWDL 2541 (2548)
| +|++ +++||.| +++++|++
T Consensus 279 w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~ 310 (902)
T 2oaj_A 279 WMCENNPEYTSLLISHKSISRGDNQSLTMIDL 310 (902)
T ss_dssp EEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred EEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence 8 4664 6677776 37889985
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-20 Score=234.39 Aligned_cols=261 Identities=10% Similarity=-0.012 Sum_probs=192.5
Q ss_pred EEEEEEcCCCCEE-EEEECCCeEEEEEcC--CCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEE
Q 000054 2222 TRAFSSHPLRPFF-LVGSSNTHIYLWEFG--KDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG~~L-ASGS~DGsVrLWDl~--tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVW 2298 (2548)
+.+++|+|++++| ++|+.||.|+|||+. +++.+..+... .|...|++++|+|++++|++|+.||.|.+|
T Consensus 105 v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~--------~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~ 176 (450)
T 2vdu_B 105 IRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRF--------CFSKRPNAISIAEDDTTVIIADKFGDVYSI 176 (450)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEE--------ECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecc--------cCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence 6999999999996 899999999999999 88887776531 144789999999999999999999999999
Q ss_pred EcCCCcccccccCccceeccCCcccEEE--EcCC---CCEEEEEeccCCCCeEEEEECCCCCCCccee-eeccCCCeEEE
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSS---GSVIAAAGHSSNGINVVVWDTLAPPTSSRAS-ITCHEGGARSI 2372 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpd---GslLATgG~SS~DGtVrIWDl~t~~~k~v~s-l~gHs~~VtSL 2372 (2548)
++.++..... ....+.+|...|.+ |+|+ +++|++++ .|+.|++||+.. ++.+.. +.+|.+.|+++
T Consensus 177 ~~~~~~~~~~----~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~---~d~~i~vwd~~~--~~~~~~~~~~h~~~v~~~ 247 (450)
T 2vdu_B 177 DINSIPEEKF----TQEPILGHVSMLTDVHLIKDSDGHQFIITSD---RDEHIKISHYPQ--CFIVDKWLFGHKHFVSSI 247 (450)
T ss_dssp ETTSCCCSSC----CCCCSEECSSCEEEEEEEECTTSCEEEEEEE---TTSCEEEEEESC--TTCEEEECCCCSSCEEEE
T ss_pred ecCCcccccc----cceeeecccCceEEEEEcCCCCCCcEEEEEc---CCCcEEEEECCC--CceeeeeecCCCCceEEE
Confidence 9987753210 11235678887764 8899 88999986 899999999976 556655 56899999999
Q ss_pred EEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccC---CCCCCccCCCCCceEEEc
Q 000054 2373 SVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADA---QTGSGSKPGDQNGMLWYI 2449 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafS---pdGk~v~s~D~sv~Iwdi 2449 (2548)
+|+ + +.+|++|+.||+|++|| +.+++++..+..... ...+.+. +...... +.
T Consensus 248 ~~s-d-------~~~l~s~~~d~~v~vwd---~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~---------~~ 302 (450)
T 2vdu_B 248 CCG-K-------DYLLLSAGGDDKIFAWD---WKTGKNLSTFDYNSL-----IKPYLNDQHLAPPRFQN---------EN 302 (450)
T ss_dssp EEC-S-------TTEEEEEESSSEEEEEE---TTTCCEEEEEECHHH-----HGGGCCTTSBC-----------------
T ss_pred EEC-C-------CCEEEEEeCCCeEEEEE---CCCCcEeeeecchhh-----hhhhhhhcccccccccc---------cc
Confidence 999 6 78999999999999999 556777666521000 0000000 0000000 00
Q ss_pred ccCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEEC--CCC---cEEEEecccccccccccCcccCCCCceeecEEEEEEc
Q 000054 2450 PKAHLGSVTRISTVPNTSLFLTGS-KDGDVKLWDA--KAA---QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVV 2523 (2548)
Q Consensus 2450 ~~gH~~~VtsLafSPdG~~LaSGS-~DGtIrIWDl--~Tg---ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafS 2523 (2548)
...+...|.+++|+|++++|++++ .|+.|++||+ .++ +.+..+ .+| + .|.+++|+
T Consensus 303 ~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~--------------~~~-~----~v~~~~~~ 363 (450)
T 2vdu_B 303 NDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQII--------------TFP-Y----NVISLSAH 363 (450)
T ss_dssp --CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEE--------------ECS-S----CEEEEEEE
T ss_pred cccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEe--------------ccC-C----ceEEEEec
Confidence 013456899999999999999999 8999999999 555 445444 445 2 35788999
Q ss_pred CCe-EEEEEC-------CCcEEEEECCC
Q 000054 2524 SRG-FLSCGG-------DGSVKLIQLED 2543 (2548)
Q Consensus 2524 PdG-LaSGS~-------DGtIrIWDL~s 2543 (2548)
|++ +++++. +..|++|.++.
T Consensus 364 ~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 364 NDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp TTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred CCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 988 555433 55689998753
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.8e-21 Score=230.19 Aligned_cols=247 Identities=17% Similarity=0.240 Sum_probs=180.8
Q ss_pred CCCCeEEEEEccCCCEEE-EEeC---CCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCC---CCEEEEEecc
Q 000054 2270 ALASISALQFDHYGHRFA-SAAL---DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSS---GSVIAAAGHS 2340 (2548)
Q Consensus 2270 H~~~VtsVaFSPdG~~La-SGS~---DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpd---GslLATgG~S 2340 (2548)
|.+.|++++|+|++..++ +|+. ||.|++||+.+++.... ...+|...|.+ |+|+ ++++++++
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~l~~~~-- 87 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL-------REIEKAKPIKCGTFGATSLQQRYLATGD-- 87 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE-------EEEEESSCEEEEECTTCCTTTCCEEEEE--
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce-------eeecccCcEEEEEEcCCCCCCceEEEec--
Confidence 668999999999986555 5555 99999999997753321 12356777764 7887 69999986
Q ss_pred CCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCc-eeeeecCCCC
Q 000054 2341 SNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGK-TKKHKHSDRG 2419 (2548)
Q Consensus 2341 S~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk-~l~tl~~~~~ 2419 (2548)
.||.|++||+... ...+..+.+|.+.|.++.|.+. +...+.+++|++|+.||.|++||++ +++ .+..+.....
T Consensus 88 -~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~s~~~~~l~~~~~d~~i~vwd~~---~~~~~~~~~~~~~~ 161 (357)
T 3i2n_A 88 -FGGNLHIWNLEAP-EMPVYSVKGHKEIINAIDGIGG-LGIGEGAPEIVTGSRDGTVKVWDPR---QKDDPVANMEPVQG 161 (357)
T ss_dssp -TTSCEEEECTTSC-SSCSEEECCCSSCEEEEEEESG-GGCC-CCCEEEEEETTSCEEEECTT---SCSSCSEEECCCTT
T ss_pred -CCCeEEEEeCCCC-CccEEEEEecccceEEEeeccc-cccCCCccEEEEEeCCCeEEEEeCC---CCCCcceeccccCC
Confidence 8999999999863 2378889999999999977541 0001127899999999999999965 343 3444422222
Q ss_pred CCCccccccc----cCCCCCC--ccCCCCCceEEEcc-------cCCCCCEEEEEEeC---CCCEEEEEeCCCcEEEEEC
Q 000054 2420 GSSINTCAHA----DAQTGSG--SKPGDQNGMLWYIP-------KAHLGSVTRISTVP---NTSLFLTGSKDGDVKLWDA 2483 (2548)
Q Consensus 2420 ~s~~~~~~va----fSpdGk~--v~s~D~sv~Iwdi~-------~gH~~~VtsLafSP---dG~~LaSGS~DGtIrIWDl 2483 (2548)
........+. +++++.+ ++..++.+++|++. ..|...|.+++|+| ++.+|++|+.||.|++||+
T Consensus 162 ~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 241 (357)
T 3i2n_A 162 ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM 241 (357)
T ss_dssp SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence 2122223333 7888887 56677899999964 35889999999999 9999999999999999999
Q ss_pred CCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCCC
Q 000054 2484 KAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2484 ~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~sg 2544 (2548)
++++.+..+. ...+.+|.. .|++++|+|++ +++|+.||.|++||+.++
T Consensus 242 ~~~~~~~~~~---------~~~~~~~~~----~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 242 RTQHPTKGFA---------SVSEKAHKS----TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp EEEETTTEEE---------EEEEECCSS----CEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred cCCCccccee---------eeccCCCcC----CEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence 8765443331 001246764 45777999998 889999999999999754
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-20 Score=219.39 Aligned_cols=227 Identities=17% Similarity=0.225 Sum_probs=181.1
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEE
Q 000054 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVV 2347 (2548)
Q Consensus 2270 H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVr 2347 (2548)
|.+.|++++| +++++|++|+.||.|++||+.++... ..+..|...|.+ ++|+++++++++ .|+.|+
T Consensus 17 h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~ 84 (313)
T 3odt_A 17 HDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLG--------TVVYTGQGFLNSVCYDSEKELLLFGG---KDTMIN 84 (313)
T ss_dssp CSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEE--------EEEEECSSCEEEEEEETTTTEEEEEE---TTSCEE
T ss_pred CCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEE--------EEeecCCccEEEEEECCCCCEEEEec---CCCeEE
Confidence 5699999999 99999999999999999999876432 235567777764 899999999997 899999
Q ss_pred EEECCCCC-CCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000054 2348 VWDTLAPP-TSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2348 IWDl~t~~-~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
+|++.... .+.+..+.+|...|.++.|. +..+++|+.||.|++||. ++....+.. +.. ...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---------~~~l~~~~~d~~i~~~d~-----~~~~~~~~~---~~~-~v~ 146 (313)
T 3odt_A 85 GVPLFATSGEDPLYTLIGHQGNVCSLSFQ---------DGVVISGSWDKTAKVWKE-----GSLVYNLQA---HNA-SVW 146 (313)
T ss_dssp EEETTCCTTSCC-CEECCCSSCEEEEEEE---------TTEEEEEETTSEEEEEET-----TEEEEEEEC---CSS-CEE
T ss_pred EEEeeecCCCCcccchhhcccCEEEEEec---------CCEEEEEeCCCCEEEEcC-----CcEEEeccc---CCC-cee
Confidence 99987532 34577888999999999994 349999999999999992 344444321 111 223
Q ss_pred ccccCC-CCCC--ccCCCCCceEEEc------ccC-CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccc
Q 000054 2427 AHADAQ-TGSG--SKPGDQNGMLWYI------PKA-HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLH 2496 (2548)
Q Consensus 2427 ~vafSp-dGk~--v~s~D~sv~Iwdi------~~g-H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~H 2496 (2548)
.+.+.+ ++.. +++.++.+++|+. +.. |...|.+++|+|++. +++|+.||.|++||+++++.+..+
T Consensus 147 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~---- 221 (313)
T 3odt_A 147 DAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTY---- 221 (313)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEE----
T ss_pred EEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhh----
Confidence 344444 6665 6778899999984 233 899999999999998 999999999999999999998877
Q ss_pred cccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCCc
Q 000054 2497 ERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2497 s~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.+|.+ .|++++|+|++ +++++.||.|++||+.++.
T Consensus 222 ----------~~~~~----~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~ 257 (313)
T 3odt_A 222 ----------EGHES----FVYCIKLLPNGDIVSCGEDRTVRIWSKENGS 257 (313)
T ss_dssp ----------ECCSS----CEEEEEECTTSCEEEEETTSEEEEECTTTCC
T ss_pred ----------hcCCc----eEEEEEEecCCCEEEEecCCEEEEEECCCCc
Confidence 46664 45778999999 9999999999999998774
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=226.73 Aligned_cols=244 Identities=11% Similarity=0.117 Sum_probs=186.5
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCC-EEEEEeccCCCCe
Q 000054 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGS-VIAAAGHSSNGIN 2345 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGs-lLATgG~SS~DGt 2345 (2548)
.|.+.|++++|+|++++|++|+.||.|++||+.++.... ......+|...|.+ |+|+++ ++++++ .||.
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~ 80 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV-----DLLQSLRYKHPLLCCNFIDNTDLQIYVGT---VQGE 80 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE-----EEEEEEECSSCEEEEEEEESSSEEEEEEE---TTSC
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc-----cceeeeecCCceEEEEECCCCCcEEEEEc---CCCe
Confidence 467999999999999999999999999999998764111 11234577777764 889999 999986 8999
Q ss_pred EEEEEC-CCCCCCcceeeec--cCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCcccc------CceeeeecC
Q 000054 2346 VVVWDT-LAPPTSSRASITC--HEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIAT------GKTKKHKHS 2416 (2548)
Q Consensus 2346 VrIWDl-~t~~~k~v~sl~g--Hs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~T------Gk~l~tl~~ 2416 (2548)
|++||+ .. .....+.+ |...|.+++|+|. ..+++|+.||.|++||++.... ++.+..+.
T Consensus 81 i~~wd~~~~---~~~~~~~~~~~~~~v~~l~~~~~--------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~- 148 (342)
T 1yfq_A 81 ILKVDLIGS---PSFQALTNNEANLGICRICKYGD--------DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK- 148 (342)
T ss_dssp EEEECSSSS---SSEEECBSCCCCSCEEEEEEETT--------TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-
T ss_pred EEEEEeccC---CceEeccccCCCCceEEEEeCCC--------CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-
Confidence 999999 75 24467778 9999999999983 3999999999999999652100 33333321
Q ss_pred CCCCCCccccccccCCCCCCccCCCCCceEEEccc-----------CCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECC
Q 000054 2417 DRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK-----------AHLGSVTRISTVP-NTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2417 ~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~-----------gH~~~VtsLafSP-dG~~LaSGS~DGtIrIWDl~ 2484 (2548)
.......+.+++++-.++..++.+++|++.. .|...|.+++|+| +++++++|+.||.|++||++
T Consensus 149 ----~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~ 224 (342)
T 1yfq_A 149 ----VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224 (342)
T ss_dssp ----SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred ----eCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEc
Confidence 2233456788888855788889999999654 3677899999999 99999999999999999998
Q ss_pred CC------cEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2485 AA------QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2485 Tg------ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.+ +....+. .|.... .-.+|. ..|.+++|+|++ |++|+.||.|++||+.++.
T Consensus 225 ~~~~~~~~~~~~~~~-~~~~~~----~~~~~~----~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~ 284 (342)
T 1yfq_A 225 DQGDDYNSSKRFAFR-CHRLNL----KDTNLA----YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp TTCCSTTCTTCEEEE-CCCCCT----TCCSSC----CCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred CCCcccccccceeee-cccccc----cccccc----eeEEEEEEcCCCCEEEEecCCceEEEEcCccHh
Confidence 76 6555552 111000 001222 346788999999 9999999999999998764
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.85 E-value=9e-20 Score=226.96 Aligned_cols=269 Identities=9% Similarity=0.062 Sum_probs=205.8
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
.+++|+|++.++++++.|+.|++||..+++....+... ...+|.+.|.+++|+++++.+++++.||.|++||+++
T Consensus 126 ~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~ 200 (433)
T 3bws_A 126 KSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPE-----KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKT 200 (433)
T ss_dssp CCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCH-----HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTT
T ss_pred eEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcc-----cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCC
Confidence 57889997778888889999999999998877543210 0123568899999999999999999999999999987
Q ss_pred CcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCC
Q 000054 2303 GGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLG 2380 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg 2380 (2548)
++... .+..|...+. +++|+++.+++++ +.|+.|++||+++ ++.+..+.. ...+.+++|+|+
T Consensus 201 ~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~i~~~d~~~--~~~~~~~~~-~~~~~~~~~~~~--- 264 (433)
T 3bws_A 201 LAYKA--------TVDLTGKWSKILLYDPIRDLVYCSN--WISEDISVIDRKT--KLEIRKTDK-IGLPRGLLLSKD--- 264 (433)
T ss_dssp CCEEE--------EEECSSSSEEEEEEETTTTEEEEEE--TTTTEEEEEETTT--TEEEEECCC-CSEEEEEEECTT---
T ss_pred ceEEE--------EEcCCCCCeeEEEEcCCCCEEEEEe--cCCCcEEEEECCC--CcEEEEecC-CCCceEEEEcCC---
Confidence 75332 2445665554 4899999886665 4789999999976 555666654 456999999998
Q ss_pred CCCCCCEEEEEe--------CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC---ccCCCCCceEEEc
Q 000054 2381 SGSVSPLIVTGG--------KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG---SKPGDQNGMLWYI 2449 (2548)
Q Consensus 2381 ~gs~g~lLVSGS--------~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~---v~s~D~sv~Iwdi 2449 (2548)
+..+++++ .||.|++||+ .+++.+..... ......++++|+|+. .+..++.+++|+.
T Consensus 265 ----g~~l~~~~~~~~~~~~~dg~i~~~d~---~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~ 332 (433)
T 3bws_A 265 ----GKELYIAQFSASNQESGGGRLGIYSM---DKEKLIDTIGP-----PGNKRHIVSGNTENKIYVSDMCCSKIEVYDL 332 (433)
T ss_dssp ----SSEEEEEEEESCTTCSCCEEEEEEET---TTTEEEEEEEE-----EECEEEEEECSSTTEEEEEETTTTEEEEEET
T ss_pred ----CCEEEEEECCCCccccCCCeEEEEEC---CCCcEEeeccC-----CCCcceEEECCCCCEEEEEecCCCEEEEEEC
Confidence 67888887 5899999994 45555544311 112345788999974 3467888999996
Q ss_pred cc-------CCCCCEEEEEEeCCCCEEEEEeC---------------CCcEEEEECCCCcEEEEecccccccccccCccc
Q 000054 2450 PK-------AHLGSVTRISTVPNTSLFLTGSK---------------DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSR 2507 (2548)
Q Consensus 2450 ~~-------gH~~~VtsLafSPdG~~LaSGS~---------------DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~ 2507 (2548)
.. .+...+.+++|+|+|+++++++. ||.|++||+.+++.+..+.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~-------------- 398 (433)
T 3bws_A 333 KEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE-------------- 398 (433)
T ss_dssp TTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE--------------
T ss_pred CCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec--------------
Confidence 43 36678999999999999988876 5799999999999888762
Q ss_pred CCCCceeecEEEEEEcCCe--EEEEE-CCCcEEEEECCC
Q 000054 2508 GFGGVVRAGVTDIQVVSRG--FLSCG-GDGSVKLIQLED 2543 (2548)
Q Consensus 2508 GH~~~V~a~VtsLafSPdG--LaSGS-~DGtIrIWDL~s 2543 (2548)
++ ..+.+++|+|+| +++++ .|++|++|++++
T Consensus 399 ~~-----~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 399 AG-----NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp CS-----SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred CC-----CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 22 235778999999 66665 599999999864
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.85 E-value=9.3e-21 Score=236.52 Aligned_cols=255 Identities=12% Similarity=0.050 Sum_probs=167.5
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEcCCCceeEE--EeccCCCCCCCCCCCCCeEEEEEcc--------CCCEEEEEeCCCc
Q 000054 2225 FSSHPLRPFFLVGSSNTHIYLWEFGKDKATAT--YGVLPAANVPPPYALASISALQFDH--------YGHRFASAALDGT 2294 (2548)
Q Consensus 2225 VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t--~~~l~ghs~~~~~H~~~VtsVaFSP--------dG~~LaSGS~DGt 2294 (2548)
..+.+++.++++|+.|++|+|||..+++.... +.. ..+|.+.|++|+|+| ++++|++|+.|++
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~-------~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~t 167 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGG-------KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCT 167 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECT-------TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecc-------cCCCCCceEEEEEccccccccCCCCCEEEEEECCCe
Confidence 34456778999999999999999998876443 322 345679999999998 7899999999999
Q ss_pred EEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCC-EEEEEeccCCCCeEEEEECCCCCCCc-------------
Q 000054 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGS-VIAAAGHSSNGINVVVWDTLAPPTSS------------- 2358 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGs-lLATgG~SS~DGtVrIWDl~t~~~k~------------- 2358 (2548)
|++||++++... ....+|...|. +|+|++. ++++++ .|++|++||++++....
T Consensus 168 v~~Wd~~~~~~~--------~~~~~~~~~v~~v~~~p~~~~~l~~~~---~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~ 236 (393)
T 4gq1_A 168 LIIWRLTDEGPI--------LAGYPLSSPGISVQFRPSNPNQLIVGE---RNGNIRIFDWTLNLSAEENSQTELVKNPWL 236 (393)
T ss_dssp EEEEEEETTEEE--------EEEEECSSCEEEEEEETTEEEEEEEEE---TTSEEEEEETTCCC----------CSCCCS
T ss_pred EEEEECCCCcee--------eeecCCCCCcEEEEECCCCCceEEecC---CCCEEEEEECCCCcccccccccCCcccceE
Confidence 999999876532 22445666665 4888875 788875 89999999997632110
Q ss_pred ----------ceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccc
Q 000054 2359 ----------RASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAH 2428 (2548)
Q Consensus 2359 ----------v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~v 2428 (2548)
.....+|...+.++.|.+.+ +..+++++.|+++++||++ +++....+... .......
T Consensus 237 ~s~~~~~~~~~~~~~~~~~~v~~v~~~~~d------g~~l~s~s~d~~i~vwd~~---~~~~~~~l~~~----~~~~~~~ 303 (393)
T 4gq1_A 237 LTLNTLPLVNTCHSSGIASSLANVRWIGSD------GSGILAMCKSGAWLRWNLF---ANNDYNEISDS----TMKLGPK 303 (393)
T ss_dssp EEEESGGGC------CCSSSCSEEEEETTT------TCEEEEECTTSEEEEEEC--------------------------
T ss_pred EecccccceeeeecccccccceeeeeecCC------CCEEEEEeCCCCEEEEECc---cCCCCceEeee----cCccccE
Confidence 01124688889999998554 7899999999999999954 33333322100 0001111
Q ss_pred ccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeC--CCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcc
Q 000054 2429 ADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVP--NTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSS 2506 (2548)
Q Consensus 2429 afSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSP--dG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl 2506 (2548)
.+.++++.. ..+...+ ...++| ++.++++|+.||+|++||+.+++.+..+
T Consensus 304 ~~~~~~~~~-------------~~~~~~~-~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~-------------- 355 (393)
T 4gq1_A 304 NLLPNVQGI-------------SLFPSLL-GACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIP-------------- 355 (393)
T ss_dssp CCSCSEEEE-------------CSSCCSS-CCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEE--------------
T ss_pred EEccccccc-------------cccCcce-eEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEe--------------
Confidence 222222110 1122223 333444 4457778889999999999998877655
Q ss_pred cCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCC
Q 000054 2507 RGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2507 ~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~s 2543 (2548)
.+|.. .|.+++|+|+| ||+++.|| +.+|++.+
T Consensus 356 ~~~~~----~V~svafspdG~~LA~as~~G-v~lvrL~g 389 (393)
T 4gq1_A 356 IQLGM----PIVDFCWHQDGSHLAIATEGS-VLLTRLMG 389 (393)
T ss_dssp EECSS----CEEEEEECTTSSEEEEEESSE-EEEEEEGG
T ss_pred cCCCC----cEEEEEEcCCCCEEEEEeCCC-eEEEEEeC
Confidence 34553 46788999999 77777655 66776643
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-20 Score=239.44 Aligned_cols=238 Identities=10% Similarity=0.012 Sum_probs=175.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeE-------EEec-------------cCCCCCCCCCCCCCeEEEEEcc
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATA-------TYGV-------------LPAANVPPPYALASISALQFDH 2281 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~-------t~~~-------------l~ghs~~~~~H~~~VtsVaFSP 2281 (2548)
+.+++|+|||+++|+++.|++|+ |...++.+. .+.- ..+.......|.+.|.+++|+|
T Consensus 18 v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSP 95 (588)
T 2j04_A 18 KNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSP 95 (588)
T ss_dssp SCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECS
T ss_pred EEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECC
Confidence 48899999999999999999998 655544321 1100 0110111224568899999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcc-----cEE--EEcCCCCEEEEEeccCCCCeEEEEECCCC
Q 000054 2282 YGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAM-----DVS--YITSSGSVIAAAGHSSNGINVVVWDTLAP 2354 (2548)
Q Consensus 2282 dG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~-----~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~ 2354 (2548)
+|.+||+++.||+|++||.+. .. ..+. |.. .|. +|+|||++||+|+ .||+|+|||+..+
T Consensus 96 dG~~LAs~s~dg~V~iwd~~~--~l--------~~l~-~~~~~~~~sv~svafSPDG~~LAsgs---~DGtVkIWd~~~~ 161 (588)
T 2j04_A 96 IDDWMAVLSNNGNVSVFKDNK--ML--------TNLD-SKGNLSSRTYHCFEWNPIESSIVVGN---EDGELQFFSIRKN 161 (588)
T ss_dssp SSSCEEEEETTSCEEEEETTE--EE--------EECC-CSSCSTTTCEEEEEECSSSSCEEEEE---TTSEEEEEECCCC
T ss_pred CCCEEEEEeCCCcEEEEeCCc--ee--------eecc-CCCccccccEEEEEEcCCCCEEEEEc---CCCEEEEEECCCC
Confidence 999999999999999999643 11 1123 332 344 5999999999997 9999999999863
Q ss_pred CC-C----cceee----eccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccc
Q 000054 2355 PT-S----SRASI----TCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINT 2425 (2548)
Q Consensus 2355 ~~-k----~v~sl----~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~ 2425 (2548)
.. . .+..+ .+|.+.|.+++|+|+ + +++++.|++|++||+. .+....
T Consensus 162 ~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd-------g--Laass~D~tVrlWd~~---~~~~~~------------- 216 (588)
T 2j04_A 162 SENTPEFYFESSIRLSDAGSKDWVTHIVWYED-------V--LVAALSNNSVFSMTVS---ASSHQP------------- 216 (588)
T ss_dssp TTTCCCCEEEEEEECSCTTCCCCEEEEEEETT-------E--EEEEETTCCEEEECCC---SSSSCC-------------
T ss_pred ccccccceeeeeeecccccccccEEEEEEcCC-------c--EEEEeCCCeEEEEECC---CCcccc-------------
Confidence 11 0 24565 678889999999998 6 8899999999999943 333210
Q ss_pred cccccCCCCCCccCCCCCceEEEcc-cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccC
Q 000054 2426 CAHADAQTGSGSKPGDQNGMLWYIP-KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQP 2504 (2548)
Q Consensus 2426 ~~vafSpdGk~v~s~D~sv~Iwdi~-~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~ 2504 (2548)
++..+ .+|...|.+++|+ |+.|++++ ||+|++||+.+++.....
T Consensus 217 --------------------~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~------------ 261 (588)
T 2j04_A 217 --------------------VSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK------------ 261 (588)
T ss_dssp --------------------CEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE------------
T ss_pred --------------------ceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE------------
Confidence 11111 3688999999999 68999997 699999999988774322
Q ss_pred cccCCCCceeecEEEEEE--cCCe--EEEEECCCcEEEEECC
Q 000054 2505 SSRGFGGVVRAGVTDIQV--VSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2505 tl~GH~~~V~a~VtsLaf--SPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
.||.+. |++++| +|++ +++++.||+ |+|.++
T Consensus 262 --~gh~~~----V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 262 --TGSLEN----FHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp --CSCCSC----CCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred --cCCCce----EEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 367644 466799 9999 889999999 999975
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-19 Score=214.92 Aligned_cols=230 Identities=16% Similarity=0.267 Sum_probs=179.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|.+++|+|+++++++|+.||+|++||+.+++.+..+.. |...+.++. +++..+++|+.++.+++|+..
T Consensus 70 V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~----------h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~ 137 (318)
T 4ggc_A 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTS----------HSARVGSLS--WNSYILSSGSRSGHIHHHDVR 137 (318)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC----------CSSCEEEEE--EETTEEEEEETTSEEEEEETT
T ss_pred EEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecC----------ccceEEEee--cCCCEEEEEecCCceEeeecC
Confidence 69999999999999999999999999999998888753 446676655 457899999999999999988
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCC--cceeeeccCCCeEEEEEccC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTS--SRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k--~v~sl~gHs~~VtSLafsP~ 2377 (2548)
.+.. ....+.+|...+.. +.++++++++++ .|+.|++||+++.... .......|.+.|.++.++|.
T Consensus 138 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~s~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 207 (318)
T 4ggc_A 138 VAEH-------HVATLSGHSQEVCGLRWAPDGRHLASGG---NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPW 207 (318)
T ss_dssp SSSC-------EEEEEECCSSCEEEEEECTTSSEEEEEE---TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTT
T ss_pred CCce-------eEEEEcCccCceEEEEEcCCCCEEEEEe---cCcceeEEECCCCcccccceeeecccCCceEEEEecCC
Confidence 6542 12346677777764 889999999986 8999999999863222 34556678899999999998
Q ss_pred CCCCCCCCCEE--EEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC----ccCCCCCceEEEc--
Q 000054 2378 DLGSGSVSPLI--VTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG----SKPGDQNGMLWYI-- 2449 (2548)
Q Consensus 2378 dlg~gs~g~lL--VSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~----v~s~D~sv~Iwdi-- 2449 (2548)
+ ...+ ++|+.+++|++||.+ ......... .........+++++.. .+..++.+++|++
T Consensus 208 ~------~~~~~~~~~~~~~~i~lwd~~---~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~ 273 (318)
T 4ggc_A 208 Q------SNVLATGGGTSDRHIRIWNVC---SGACLSAVD-----AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT 273 (318)
T ss_dssp S------TTEEEEEECTTTCEEEEEETT---TCCEEEEEE-----CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT
T ss_pred C------CcEEEEEecCCCCEEEEEecc---ccccccccc-----ceeeeeeeeecccccceEEEEEcCCCEEEEEECCC
Confidence 4 4444 466789999999954 344443331 1122345567777765 2346889999985
Q ss_pred ------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 000054 2450 ------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQ 2487 (2548)
Q Consensus 2450 ------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tge 2487 (2548)
+.+|.+.|++++|+|+|++|+|||.||+|+|||+.+..
T Consensus 274 ~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 274 MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred CcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 46899999999999999999999999999999997643
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-20 Score=222.21 Aligned_cols=211 Identities=21% Similarity=0.292 Sum_probs=166.9
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCC--CCEEEEEeccCCCC
Q 000054 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSS--GSVIAAAGHSSNGI 2344 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpd--GslLATgG~SS~DG 2344 (2548)
+|.+.|++++|+|++++|++|+.||.|++||+..+... ....+.+|...|.+ |+++ ++++++++ .||
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~dg 79 (379)
T 3jrp_A 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK------LIDTLTGHEGPVWRVDWAHPKFGTILASCS---YDG 79 (379)
T ss_dssp ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEE------EEEEECCCSSCEEEEEECCGGGCSEEEEEE---TTS
T ss_pred CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcce------eeeEecCCCCcEEEEEeCCCCCCCEEEEec---cCC
Confidence 46799999999999999999999999999999743211 22347789888875 7766 89999987 899
Q ss_pred eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcc
Q 000054 2345 NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSIN 2424 (2548)
Q Consensus 2345 tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~ 2424 (2548)
.|++||+.......+..+.+|...|.+++|+|++ .+.++++|+.||.|++||++. +......
T Consensus 80 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~l~~~~~d~~i~v~d~~~---~~~~~~~---------- 141 (379)
T 3jrp_A 80 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHE-----YGPLLLVASSDGKVSVVEFKE---NGTTSPI---------- 141 (379)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-----GCSEEEEEETTSEEEEEECCT---TSCCCEE----------
T ss_pred EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCC-----CCCEEEEecCCCcEEEEecCC---CCceeeE----------
Confidence 9999999863223677888899999999999872 146999999999999999653 2111111
Q ss_pred ccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeC-------------CCCEEEEEeCCCcEEEEECCCCcEEEE
Q 000054 2425 TCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVP-------------NTSLFLTGSKDGDVKLWDAKAAQLVYH 2491 (2548)
Q Consensus 2425 ~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSP-------------dG~~LaSGS~DGtIrIWDl~Tgell~t 2491 (2548)
...+|...|.+++|+| ++.+|++|+.||.|++||+++++....
T Consensus 142 ------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 197 (379)
T 3jrp_A 142 ------------------------IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 197 (379)
T ss_dssp ------------------------EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEE
T ss_pred ------------------------EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCccee
Confidence 1157899999999999 699999999999999999987653322
Q ss_pred ecccccccccccCcccCCCCceeecEEEEEEcCC---e--EEEEECCCcEEEEECCCC
Q 000054 2492 WSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSR---G--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2492 L~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPd---G--LaSGS~DGtIrIWDL~sg 2544 (2548)
+. ..+.+|.+. |.+++|+|+ + |++++.||.|++||+.++
T Consensus 198 ~~----------~~~~~h~~~----v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 198 LE----------STLEGHSDW----VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp EE----------EEECCCSSC----EEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred eE----------EEEecccCc----EeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence 20 113677654 567799999 7 899999999999999875
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-19 Score=218.51 Aligned_cols=255 Identities=11% Similarity=0.084 Sum_probs=197.4
Q ss_pred CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEE-EEEeCCCcEEEEEcCCCccccccc
Q 000054 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTWQLEVGGRSNVRP 2310 (2548)
Q Consensus 2232 ~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~L-aSGS~DGtVrVWDl~tgk~i~i~p 2310 (2548)
.++++++.|+.|++||+.+++.+..+.. | ..+.+++|+|+++++ ++++.|++|++||+.+++....
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~----------~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~-- 69 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPV----------G-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-- 69 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEEC----------S-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE--
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeec----------C-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE--
Confidence 4577899999999999999988877642 2 458999999999977 6777999999999988764322
Q ss_pred CccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEE
Q 000054 2311 MESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLI 2388 (2548)
Q Consensus 2311 ~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lL 2388 (2548)
+..+. .+. +++|+++.+++++ +.++.|++||+.+ ++.+..+.. ...+.+++|+|+ ++.+
T Consensus 70 ------~~~~~-~v~~~~~spdg~~l~~~~--~~~~~v~v~d~~~--~~~~~~~~~-~~~~~~~~~s~d-------g~~l 130 (391)
T 1l0q_A 70 ------VPAGS-SPQGVAVSPDGKQVYVTN--MASSTLSVIDTTS--NTVAGTVKT-GKSPLGLALSPD-------GKKL 130 (391)
T ss_dssp ------EECSS-SEEEEEECTTSSEEEEEE--TTTTEEEEEETTT--TEEEEEEEC-SSSEEEEEECTT-------SSEE
T ss_pred ------EECCC-CccceEECCCCCEEEEEE--CCCCEEEEEECCC--CeEEEEEeC-CCCcceEEECCC-------CCEE
Confidence 22232 443 4899999887766 4789999999986 455555554 457899999998 5655
Q ss_pred -EEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC---ccCCCCCceEEEccc-------CCCCCE
Q 000054 2389 -VTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG---SKPGDQNGMLWYIPK-------AHLGSV 2457 (2548)
Q Consensus 2389 -VSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~---v~s~D~sv~Iwdi~~-------gH~~~V 2457 (2548)
++++.|+.|++|| +.+++.+..+... .....+.++|+|+. .+..++.+++|+... .+...+
T Consensus 131 ~~~~~~~~~v~~~d---~~~~~~~~~~~~~-----~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 202 (391)
T 1l0q_A 131 YVTNNGDKTVSVIN---TVTKAVINTVSVG-----RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAP 202 (391)
T ss_dssp EEEETTTTEEEEEE---TTTTEEEEEEECC-----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEE
T ss_pred EEEeCCCCEEEEEE---CCCCcEEEEEecC-----CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCc
Confidence 7888899999999 5566766665221 12356789999986 345677899999643 356688
Q ss_pred EEEEEeCCCCEEEEEe---CCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--E-EEEE
Q 000054 2458 TRISTVPNTSLFLTGS---KDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--F-LSCG 2531 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS---~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--L-aSGS 2531 (2548)
.+++|+|+++++++++ .|+.|++||+.+++.+..+ ..|. .+.+++|+|+| + ++++
T Consensus 203 ~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~--------------~~~~-----~~~~~~~s~dg~~l~~s~~ 263 (391)
T 1l0q_A 203 SGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI--------------PVGP-----DPAGIAVTPDGKKVYVALS 263 (391)
T ss_dssp EEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE--------------ECCS-----SEEEEEECTTSSEEEEEET
T ss_pred cceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE--------------ecCC-----CccEEEEccCCCEEEEEcC
Confidence 9999999999999888 6899999999999988766 2332 24677999999 4 6888
Q ss_pred CCCcEEEEECCCCc
Q 000054 2532 GDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2532 ~DGtIrIWDL~sg~ 2545 (2548)
.|+.|++||+.++.
T Consensus 264 ~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 264 FXNTVSVIDTATNT 277 (391)
T ss_dssp TTTEEEEEETTTTE
T ss_pred CCCEEEEEECCCCc
Confidence 99999999998764
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.6e-20 Score=223.36 Aligned_cols=232 Identities=13% Similarity=0.060 Sum_probs=163.8
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCC---------CceeEEEeccCCCCCCCCCCCCCeEEEEEcc--CCCEEEEEeC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGK---------DKATATYGVLPAANVPPPYALASISALQFDH--YGHRFASAAL 2291 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~t---------g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP--dG~~LaSGS~ 2291 (2548)
.++.++|+ +++|+.|++|++|+... ++.+..+. ..|.+.|.+++|+| +++++++|+.
T Consensus 80 ~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~l~s~s~ 147 (343)
T 3lrv_A 80 RTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE---------VDSANEIIYMYGHNEVNTEYFIWADN 147 (343)
T ss_dssp CTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE---------CCCSSCEEEEECCC---CCEEEEEET
T ss_pred eeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEee---------cCCCCCEEEEEcCCCCCCCEEEEEeC
Confidence 34556676 89999999999997663 33333322 13457899999999 9999999999
Q ss_pred CCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcc-eeeec-cCC
Q 000054 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR-ASITC-HEG 2367 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v-~sl~g-Hs~ 2367 (2548)
||+|++||+++++..... ...|...+. +|+|+|.++++|+ .||.|++||+++ ++.+ ..+.+ |.+
T Consensus 148 dg~i~~wd~~~~~~~~~~-------~~~~~~~i~~~~~~pdg~~lasg~---~dg~i~iwd~~~--~~~~~~~~~~~h~~ 215 (343)
T 3lrv_A 148 RGTIGFQSYEDDSQYIVH-------SAKSDVEYSSGVLHKDSLLLALYS---PDGILDVYNLSS--PDQASSRFPVDEEA 215 (343)
T ss_dssp TCCEEEEESSSSCEEEEE-------CCCSSCCCCEEEECTTSCEEEEEC---TTSCEEEEESSC--TTSCCEECCCCTTS
T ss_pred CCcEEEEECCCCcEEEEE-------ecCCCCceEEEEECCCCCEEEEEc---CCCEEEEEECCC--CCCCccEEeccCCC
Confidence 999999999987643211 122333343 5899999999986 899999999987 4554 67777 999
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEE
Q 000054 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLW 2447 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iw 2447 (2548)
.|++++|+|+ +.+|++|+ |+.|++||+|. ++.+..+.
T Consensus 216 ~v~~l~fs~~-------g~~l~s~~-~~~v~iwd~~~---~~~~~~~~-------------------------------- 252 (343)
T 3lrv_A 216 KIKEVKFADN-------GYWMVVEC-DQTVVCFDLRK---DVGTLAYP-------------------------------- 252 (343)
T ss_dssp CEEEEEECTT-------SSEEEEEE-SSBEEEEETTS---STTCBSSC--------------------------------
T ss_pred CEEEEEEeCC-------CCEEEEEe-CCeEEEEEcCC---CCcceeec--------------------------------
Confidence 9999999998 78999999 55999999763 33322220
Q ss_pred EcccCCCCCE--EEEEEeCCCCEEEEEeC-CCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcC
Q 000054 2448 YIPKAHLGSV--TRISTVPNTSLFLTGSK-DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVS 2524 (2548)
Q Consensus 2448 di~~gH~~~V--tsLafSPdG~~LaSGS~-DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSP 2524 (2548)
.+..|...+ .+++|+|+|++|++++. |+.|+||++.++...... ..+..++|++
T Consensus 253 -~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----------------------~~~~~~~~~~ 309 (343)
T 3lrv_A 253 -TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----------------------DEESALCLQS 309 (343)
T ss_dssp -CCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----------------------EEEEECCC--
T ss_pred -ccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----------------------cCceeEecCc
Confidence 001122223 57999999999999998 999999999755432211 1133345555
Q ss_pred ---Ce--EEEEECCCcEEEEECCCC
Q 000054 2525 ---RG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2525 ---dG--LaSGS~DGtIrIWDL~sg 2544 (2548)
++ +++++.||.++++-..++
T Consensus 310 ~~~~~~~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 310 DTADFTDMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp --CCCCEEEEEEETTEEEEEEECSS
T ss_pred cccccceeEEEecCCceEEEEecCC
Confidence 43 788888888888765544
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=9e-20 Score=219.15 Aligned_cols=244 Identities=14% Similarity=0.167 Sum_probs=176.1
Q ss_pred CCCCCeEEEEEccC---CCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCC
Q 000054 2269 YALASISALQFDHY---GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNG 2343 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPd---G~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~D 2343 (2548)
.|.+.|++++|+|+ |++|++|+.||.|++||+++.... ....+.+|...|.+ |+|++++|++++ .|
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~------~~~~~~~h~~~v~~~~~~~~~~~l~s~~---~d 107 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT------IPKAQQMHTGPVLDVCWSDDGSKVFTAS---CD 107 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE------EEEEEEECSSCEEEEEECTTSSEEEEEE---TT
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce------eEEEeccccCCEEEEEECcCCCEEEEEc---CC
Confidence 36699999999998 699999999999999999873211 11346778888874 899999999986 89
Q ss_pred CeEEEEECCCCCCCcceeeeccCCCeEEEEE--ccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCC
Q 000054 2344 INVVVWDTLAPPTSSRASITCHEGGARSISV--FDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGS 2421 (2548)
Q Consensus 2344 GtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf--sP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s 2421 (2548)
|.|++||+.. .+. ..+.+|...|++++| +++ +.++++|+.||.|++||++ +++.+..+....
T Consensus 108 g~v~iwd~~~--~~~-~~~~~~~~~v~~~~~~~~~~-------~~~l~~~~~dg~i~vwd~~---~~~~~~~~~~~~--- 171 (368)
T 3mmy_A 108 KTAKMWDLSS--NQA-IQIAQHDAPVKTIHWIKAPN-------YSCVMTGSWDKTLKFWDTR---SSNPMMVLQLPE--- 171 (368)
T ss_dssp SEEEEEETTT--TEE-EEEEECSSCEEEEEEEECSS-------CEEEEEEETTSEEEEECSS---CSSCSEEEECSS---
T ss_pred CcEEEEEcCC--CCc-eeeccccCceEEEEEEeCCC-------CCEEEEccCCCcEEEEECC---CCcEEEEEecCC---
Confidence 9999999986 333 346689999999999 665 6799999999999999954 456555552211
Q ss_pred CccccccccCCCCCCccCCCCCceEEEccc----------CCCCCEEEEEEeCCCCE----EEEEeCCCcEEEEECCCC-
Q 000054 2422 SINTCAHADAQTGSGSKPGDQNGMLWYIPK----------AHLGSVTRISTVPNTSL----FLTGSKDGDVKLWDAKAA- 2486 (2548)
Q Consensus 2422 ~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~----------gH~~~VtsLafSPdG~~----LaSGS~DGtIrIWDl~Tg- 2486 (2548)
....+.+..+...++..++.+.+|++.. .+...+.++++.++... +++|+.||.|++||++..
T Consensus 172 --~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~ 249 (368)
T 3mmy_A 172 --RCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN 249 (368)
T ss_dssp --CEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC
T ss_pred --CceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC
Confidence 1222233333334777788889998632 24456677777766554 999999999999999977
Q ss_pred --cEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2487 --QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2487 --ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+.+..+. .|..... .....+|. ..|++++|+|++ |++|+.||.|++||+.++.
T Consensus 250 ~~~~~~~~~-~~~~~~~-~~~~~~~~----~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~ 306 (368)
T 3mmy_A 250 PAKDNFTFK-CHRSNGT-NTSAPQDI----YAVNGIAFHPVHGTLATVGSDGRFSFWDKDART 306 (368)
T ss_dssp HHHHSEEEE-CSEEC-----CCCEEE----CCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred ccccceeee-eeecccc-cccccccc----cceEEEEEecCCCEEEEEccCCeEEEEECCCCc
Confidence 4444442 1111000 00011221 247888999999 9999999999999998764
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.83 E-value=8.9e-20 Score=226.47 Aligned_cols=231 Identities=14% Similarity=0.163 Sum_probs=182.6
Q ss_pred EEEEEEcC-CCCEEEEEECCCeEEEEEcCCC-------ceeEEEeccCCCCCCCCCCCCCeEEEEEccCC-CEEEEEeCC
Q 000054 2222 TRAFSSHP-LRPFFLVGSSNTHIYLWEFGKD-------KATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALD 2292 (2548)
Q Consensus 2222 V~~VsfSP-dG~~LASGS~DGsVrLWDl~tg-------~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG-~~LaSGS~D 2292 (2548)
|.+++|+| ++.+|++|+.||+|++||+.++ +.+..+. +|.+.|++++|+|++ ++|++|+.|
T Consensus 84 V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~----------~h~~~v~~~~~~p~~~~~l~s~~~d 153 (402)
T 2aq5_A 84 VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE----------GHTKRVGIVAWHPTAQNVLLSAGCD 153 (402)
T ss_dssp EEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE----------CCSSCEEEEEECSSBTTEEEEEETT
T ss_pred EEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec----------CCCCeEEEEEECcCCCCEEEEEcCC
Confidence 79999999 9999999999999999999987 3444443 356899999999998 799999999
Q ss_pred CcEEEEEcCCCcccccccCccceec--cCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee-eccCC
Q 000054 2293 GTVCTWQLEVGGRSNVRPMESCLCF--SSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEG 2367 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~--~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-~gHs~ 2367 (2548)
|+|++||+++++... .+ .+|...|.+ |+|+++++++++ .|+.|++||++. ++.+..+ .+|.+
T Consensus 154 g~i~iwd~~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~iwd~~~--~~~~~~~~~~~~~ 220 (402)
T 2aq5_A 154 NVILVWDVGTGAAVL--------TLGPDVHPDTIYSVDWSRDGALICTSC---RDKRVRVIEPRK--GTVVAEKDRPHEG 220 (402)
T ss_dssp SCEEEEETTTTEEEE--------EECTTTCCSCEEEEEECTTSSCEEEEE---TTSEEEEEETTT--TEEEEEEECSSCS
T ss_pred CEEEEEECCCCCccE--------EEecCCCCCceEEEEECCCCCEEEEEe---cCCcEEEEeCCC--CceeeeeccCCCC
Confidence 999999999875432 24 678888764 899999999986 899999999986 5677777 68887
Q ss_pred C-eEEEEEccCCCCCCCCCCEEEEE---eCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCc---cCC
Q 000054 2368 G-ARSISVFDNDLGSGSVSPLIVTG---GKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGS---KPG 2440 (2548)
Q Consensus 2368 ~-VtSLafsP~dlg~gs~g~lLVSG---S~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v---~s~ 2440 (2548)
. +.++.|+|+ +.++++| +.||.|++||++........... ........+.++|++..+ +..
T Consensus 221 ~~~~~~~~~~~-------~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~g~~ 288 (402)
T 2aq5_A 221 TRPVHAVFVSE-------GKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-----DTSSGVLLPFFDPDTNIVYLCGKG 288 (402)
T ss_dssp SSCCEEEECST-------TEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-----CCCSSCEEEEEETTTTEEEEEETT
T ss_pred CcceEEEEcCC-------CcEEEEeccCCCCceEEEEcCccccCCceEEec-----cCCCceeEEEEcCCCCEEEEEEcC
Confidence 6 899999998 6788888 79999999996532211111111 112234567899999873 346
Q ss_pred CCCceEEEcccC-----------CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000054 2441 DQNGMLWYIPKA-----------HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLV 2489 (2548)
Q Consensus 2441 D~sv~Iwdi~~g-----------H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell 2489 (2548)
|+.+++|++..+ |...|.+++|+|++.++++ .|+.+++|++.+++..
T Consensus 289 dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~ 346 (402)
T 2aq5_A 289 DSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE 346 (402)
T ss_dssp CSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred CCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence 899999986432 4588999999999998875 5779999999987653
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.7e-19 Score=217.02 Aligned_cols=249 Identities=11% Similarity=0.082 Sum_probs=164.1
Q ss_pred eEEEEEEEcCCCC---EEEEEECCCeEEEEEcCCC---ceeEEEeccCCCC---CCC------------CCCCCCeEEEE
Q 000054 2220 ISTRAFSSHPLRP---FFLVGSSNTHIYLWEFGKD---KATATYGVLPAAN---VPP------------PYALASISALQ 2278 (2548)
Q Consensus 2220 V~V~~VsfSPdG~---~LASGS~DGsVrLWDl~tg---~~l~t~~~l~ghs---~~~------------~~H~~~VtsVa 2278 (2548)
+.+.++-|-..|- .++++++ ..|++|+..++ +.+.+.......- .+. .-+...|++++
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla 118 (356)
T 2w18_A 40 VDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF 118 (356)
T ss_dssp EEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred EEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence 3366776655432 4555554 68999999988 5555543321100 001 12334788999
Q ss_pred EccC----CCEEEEEeC--------------------CCcEEEEEcCC-CcccccccCccceeccCCc--ccEEEEcC--
Q 000054 2279 FDHY----GHRFASAAL--------------------DGTVCTWQLEV-GGRSNVRPMESCLCFSSHA--MDVSYITS-- 2329 (2548)
Q Consensus 2279 FSPd----G~~LaSGS~--------------------DGtVrVWDl~t-gk~i~i~p~~s~~t~~gH~--~~V~afSp-- 2329 (2548)
|+|+ +..+++++. |+.|++|++.. |+.. ....+|. ..+.+|++
T Consensus 119 ~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~--------~s~~~~~~~v~~l~fs~~~ 190 (356)
T 2w18_A 119 CSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGK--------ENQFLMPPEETILTFAEVQ 190 (356)
T ss_dssp C------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEE--------EEEEECCCSSCEEEEEEEE
T ss_pred ECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCcee--------eeeccCCCceeeEEeeccC
Confidence 9999 888887664 66777777643 3211 1122333 34455666
Q ss_pred -CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccC---CCeEEEEEccCCCCCCCCCCEE------------EEEeC
Q 000054 2330 -SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE---GGARSISVFDNDLGSGSVSPLI------------VTGGK 2393 (2548)
Q Consensus 2330 -dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs---~~VtSLafsP~dlg~gs~g~lL------------VSGS~ 2393 (2548)
++.+|++++ .|++|+|||+.+ +++++++.+|. ..+.+++|+|+ +.++ ++|+.
T Consensus 191 g~~~~LaSgS---~D~TIkIWDl~T--Gk~l~tL~g~~~~v~~v~~vafSpd-------G~~lvs~s~~~~~w~laSGs~ 258 (356)
T 2w18_A 191 GMQEALLGTT---IMNNIVIWNLKT--GQLLKKMHIDDSYQASVCHKAYSEM-------GLLFIVLSHPCAKESESLRSP 258 (356)
T ss_dssp TSTTEEEEEE---TTSEEEEEETTT--CCEEEEEECCC---CCCEEEEEEET-------TEEEEEEC------------C
T ss_pred CCCceEEEec---CCCcEEEEECCC--CcEEEEEcCCCcceeeeEEEEECCC-------CCEEEEeccCCCcceeeccCC
Confidence 678899986 999999999987 78888888654 46778899998 4444 67889
Q ss_pred CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEe
Q 000054 2394 GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGS 2473 (2548)
Q Consensus 2394 DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS 2473 (2548)
|++|++|| ..+++.+..+ .+....+|...+.+..+ ++.++++|+
T Consensus 259 D~tIklWd---~~tgk~l~v~-------------------------------~~~~p~Gh~~~~lsg~~--sg~~lASgS 302 (356)
T 2w18_A 259 VFQLIVIN---PKTTLSVGVM-------------------------------LYCLPPGQAGRFLEGDV--KDHCAAAIL 302 (356)
T ss_dssp CEEEEEEE---TTTTEEEEEE-------------------------------EECCCTTCCCCEEEEEE--ETTEEEEEE
T ss_pred CcEEEEEE---CCCCEEEEEE-------------------------------EeeccCCCcceeEcccc--CCCEEEEEc
Confidence 99999999 5677766543 11112456665555444 488999999
Q ss_pred CCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECC
Q 000054 2474 KDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2474 ~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
.||+|+|||+.++++++++ .+|.+.+ +..++|+|+| |+||+.|++|||||+.
T Consensus 303 ~DgTIkIWDl~tGk~l~tL--------------~gH~~~v---vs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 303 TSGTIAIWDLLLGQCTALL--------------PPVSDQH---WSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp TTSCEEEEETTTCSEEEEE--------------CCC--CC---CCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred CCCcEEEEECCCCcEEEEe--------------cCCCCCe---EEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 9999999999999999887 5666533 3346999999 8999999999999963
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-19 Score=219.09 Aligned_cols=245 Identities=9% Similarity=0.039 Sum_probs=176.0
Q ss_pred EEEEEcCCCCEE-EEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2223 RAFSSHPLRPFF-LVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2223 ~~VsfSPdG~~L-ASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
..+++.++++++ ++|+.|++|++||..+++.+..+. |...|.+++|+++. ++++ .|+.|++||+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-----------~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~ 127 (355)
T 3vu4_A 62 SKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-----------VDAPVKDLFLSREF--IVVS-YGDVISVFKFG 127 (355)
T ss_dssp CEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-----------CSSCEEEEEECSSE--EEEE-ETTEEEEEESS
T ss_pred EEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-----------CCCceEEEEEcCCE--EEEE-EcCEEEEEECC
Confidence 445666888877 468889999999999999888774 23689999998764 4443 48899999998
Q ss_pred CC-cccccccCccceeccCCcccEEEEcCCCCEEEEE-eccCCCCeEEEEECCCCC------C-------Cc-ceeeecc
Q 000054 2302 VG-GRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAA-GHSSNGINVVVWDTLAPP------T-------SS-RASITCH 2365 (2548)
Q Consensus 2302 tg-k~i~i~p~~s~~t~~gH~~~V~afSpdGslLATg-G~SS~DGtVrIWDl~t~~------~-------k~-v~sl~gH 2365 (2548)
++ +.... +.. ...+.++++ ..++++ | +.||.|++||+.... . .+ +..+.+|
T Consensus 128 ~~~~~~~~--------~~~-~~~~~~~s~--~~la~~sg--~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h 194 (355)
T 3vu4_A 128 NPWKRITD--------DIR-FGGVCEFSN--GLLVYSNE--FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH 194 (355)
T ss_dssp TTCCBSSC--------CEE-EEEEEEEET--TEEEEEES--SCTTCEEEEECCC------------------CCEEECCC
T ss_pred CCceeeEE--------ecc-CCceEEEEc--cEEEEeCC--CcCcEEEEEECCCCCccccccccccccccCcccEEEEcc
Confidence 76 33221 122 344556777 677765 4 489999999998631 0 12 7788999
Q ss_pred CCCeEEEEEccCCCCCCCCCCEEEEEeCCCc-EEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCc
Q 000054 2366 EGGARSISVFDNDLGSGSVSPLIVTGGKGGD-VGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNG 2444 (2548)
Q Consensus 2366 s~~VtSLafsP~dlg~gs~g~lLVSGS~DGt-VrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv 2444 (2548)
.+.|++++|+|+ +.+|++|+.||+ |++|| +.+++++..+
T Consensus 195 ~~~v~~~~~s~~-------g~~l~s~s~d~~~v~iwd---~~~~~~~~~~------------------------------ 234 (355)
T 3vu4_A 195 TNPIKMVRLNRK-------SDMVATCSQDGTIIRVFK---TEDGVLVREF------------------------------ 234 (355)
T ss_dssp SSCEEEEEECTT-------SSEEEEEETTCSEEEEEE---TTTCCEEEEE------------------------------
T ss_pred CCceEEEEECCC-------CCEEEEEeCCCCEEEEEE---CCCCcEEEEE------------------------------
Confidence 999999999998 789999999998 99999 5567777665
Q ss_pred eEEEccc-C-CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE--EEecccccccccccC-------cccCCCCce
Q 000054 2445 MLWYIPK-A-HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLV--YHWSKLHERHTFLQP-------SSRGFGGVV 2513 (2548)
Q Consensus 2445 ~Iwdi~~-g-H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell--~tL~~~Hs~hsfl~~-------tl~GH~~~V 2513 (2548)
. + |.+.|++++|+|+|++|++|+.||+|++||++.+... ..+...... .++.. .+.....
T Consensus 235 ------~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-- 305 (355)
T 3vu4_A 235 ------RRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINM-KYFQSEWSLCNFKLSVDKH-- 305 (355)
T ss_dssp ------ECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEEC-CCCCCSSCSEEEECCCCTT--
T ss_pred ------EcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeec-cccccccceeEEEeccCCC--
Confidence 3 5 8999999999999999999999999999999865321 111000000 00000 0000000
Q ss_pred eecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000054 2514 RAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2514 ~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
.....++|+++| +++++.||.+++|++..+
T Consensus 306 -~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 306 -VRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp -CCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred -CCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 012456999999 889999999999998653
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.83 E-value=3e-19 Score=225.07 Aligned_cols=212 Identities=17% Similarity=0.207 Sum_probs=164.8
Q ss_pred CCCCCeEEEEEccC-CCEEEEEeCCCcEEEEEcCCCccccc--ccCccceeccCCcccEE--EEcCCCC-EEEEEeccCC
Q 000054 2269 YALASISALQFDHY-GHRFASAALDGTVCTWQLEVGGRSNV--RPMESCLCFSSHAMDVS--YITSSGS-VIAAAGHSSN 2342 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPd-G~~LaSGS~DGtVrVWDl~tgk~i~i--~p~~s~~t~~gH~~~V~--afSpdGs-lLATgG~SS~ 2342 (2548)
.|.+.|++++|+|+ +.++++|+.||.|++||+........ ........+.+|...|. +|+|++. +|++++ .
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---~ 202 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS---D 202 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC---T
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe---C
Confidence 36789999999997 78999999999999999976311100 00123345678887775 4889888 888886 8
Q ss_pred CCeEEEEECCCCCCC-----cceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCC
Q 000054 2343 GINVVVWDTLAPPTS-----SRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSD 2417 (2548)
Q Consensus 2343 DGtVrIWDl~t~~~k-----~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~ 2417 (2548)
||.|++||+...... ....+.+|...|.+++|+|.+ +.++++++.||.|++||++.....+.+..+
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~------~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~--- 273 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH------ESLFGSVADDQKLMIWDTRNNNTSKPSHTV--- 273 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC------TTEEEEEETTSEEEEEETTCSCSSSCSEEE---
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC------CCEEEEEeCCCeEEEEECCCCCCCcceeEe---
Confidence 999999999863211 145677899999999999964 789999999999999997642212222222
Q ss_pred CCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCC-CcEEEEeccc
Q 000054 2418 RGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTS-LFLTGSKDGDVKLWDAKA-AQLVYHWSKL 2495 (2548)
Q Consensus 2418 ~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~-~LaSGS~DGtIrIWDl~T-gell~tL~~~ 2495 (2548)
.+|...|++++|+|++. ++++|+.||.|++||+++ ++.+.++
T Consensus 274 ---------------------------------~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~--- 317 (430)
T 2xyi_A 274 ---------------------------------DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF--- 317 (430)
T ss_dssp ---------------------------------ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE---
T ss_pred ---------------------------------ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe---
Confidence 57899999999999987 799999999999999997 4555544
Q ss_pred ccccccccCcccCCCCceeecEEEEEEcCCe---EEEEECCCcEEEEECCC
Q 000054 2496 HERHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2496 Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~s 2543 (2548)
.+|.+ .|++++|+|++ |++|+.||+|++||+..
T Consensus 318 -----------~~h~~----~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 318 -----------ESHKD----EIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp -----------ECCSS----CEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred -----------ecCCC----CEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 56654 45778999998 88999999999999976
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=7.6e-19 Score=220.96 Aligned_cols=222 Identities=18% Similarity=0.269 Sum_probs=177.8
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEE
Q 000054 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVW 2349 (2548)
Q Consensus 2270 H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIW 2349 (2548)
|...|+++.| +++++++|+.||+|++||+.+++.. ..+.+|...|.++..+++++++|+ .||.|++|
T Consensus 132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~--------~~~~~h~~~v~~l~~~~~~l~sg~---~dg~i~vw 198 (435)
T 1p22_A 132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECK--------RILTGHTGSVLCLQYDERVIITGS---SDSTVRVW 198 (435)
T ss_dssp SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEE--------EEECCCSSCEEEEECCSSEEEEEE---TTSCEEEE
T ss_pred CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEE--------EEEcCCCCcEEEEEECCCEEEEEc---CCCeEEEE
Confidence 4578998887 7999999999999999999887543 347789999998888999999997 89999999
Q ss_pred ECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCcee---eeecCCCCCCCcccc
Q 000054 2350 DTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTK---KHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2350 Dl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l---~tl~~~~~~s~~~~~ 2426 (2548)
|+.+ ++.+..+.+|.+.|.++.|+++ .+++|+.||.|++||++ +++.. ..+ ..+. ....
T Consensus 199 d~~~--~~~~~~~~~h~~~v~~l~~~~~---------~l~s~s~dg~i~vwd~~---~~~~~~~~~~~---~~~~-~~v~ 260 (435)
T 1p22_A 199 DVNT--GEMLNTLIHHCEAVLHLRFNNG---------MMVTCSKDRSIAVWDMA---SPTDITLRRVL---VGHR-AAVN 260 (435)
T ss_dssp ESSS--CCEEEEECCCCSCEEEEECCTT---------EEEEEETTSCEEEEECS---SSSCCEEEEEE---CCCS-SCEE
T ss_pred ECCC--CcEEEEEcCCCCcEEEEEEcCC---------EEEEeeCCCcEEEEeCC---CCCCceeeeEe---cCCC-CcEE
Confidence 9986 6788899999999999999754 99999999999999964 33333 222 1111 1223
Q ss_pred ccccCCCCCC--ccCCCCCceEEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccc
Q 000054 2427 AHADAQTGSG--SKPGDQNGMLWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLH 2496 (2548)
Q Consensus 2427 ~vafSpdGk~--v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~H 2496 (2548)
.+.+ ++.. +++.|+.+++|++ +.+|...|.++++ ++.++++|+.||.|++||+++++++.++
T Consensus 261 ~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~---- 332 (435)
T 1p22_A 261 VVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL---- 332 (435)
T ss_dssp EEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEE----
T ss_pred EEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEE----
Confidence 3344 5555 6778899999995 3479999999999 4789999999999999999999998877
Q ss_pred cccccccCcccCCCCceeecEEEEEEcCCeEEEEECCCcEEEEECCCC
Q 000054 2497 ERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2497 s~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS~DGtIrIWDL~sg 2544 (2548)
.+|.+. |.+++|++..+++|+.||+|++||+.++
T Consensus 333 ----------~~h~~~----v~~~~~~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 333 ----------EGHEEL----VRCIRFDNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp ----------CCCSSC----EEEEECCSSEEEEEETTSCEEEEEHHHH
T ss_pred ----------eCCcCc----EEEEEecCCEEEEEeCCCcEEEEECCCC
Confidence 567654 4566784444999999999999998643
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-19 Score=223.77 Aligned_cols=239 Identities=14% Similarity=0.073 Sum_probs=145.3
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcC--------CCCEEEEEeccCCC
Q 000054 2274 ISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITS--------SGSVIAAAGHSSNG 2343 (2548)
Q Consensus 2274 VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSp--------dGslLATgG~SS~D 2343 (2548)
+....+.+++.++++|+.|++|++||++++...... ....+.+|...|.+ |+| ++++||+++ .|
T Consensus 92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~---~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s---~D 165 (393)
T 4gq1_A 92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQH---VLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG---DD 165 (393)
T ss_dssp -----CCEEEEEEEEEETTSCEEEEEEETTEEEEEE---EECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE---TT
T ss_pred cceeecCCCCCEEEEEeCCCcEEEEECCCCccceee---eecccCCCCCceEEEEEccccccccCCCCCEEEEEE---CC
Confidence 333444456778999999999999999887543221 22347899999975 665 789999997 99
Q ss_pred CeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCc
Q 000054 2344 INVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSI 2423 (2548)
Q Consensus 2344 GtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~ 2423 (2548)
++|+|||++. ..++..+.+|.+.|.+++|+|++ +.+|++|+.||+|++||++ +++..............
T Consensus 166 ~tv~~Wd~~~--~~~~~~~~~~~~~v~~v~~~p~~------~~~l~~~~~d~~v~~wd~~---t~~~~~~~~~~~~~~~~ 234 (393)
T 4gq1_A 166 CTLIIWRLTD--EGPILAGYPLSSPGISVQFRPSN------PNQLIVGERNGNIRIFDWT---LNLSAEENSQTELVKNP 234 (393)
T ss_dssp SEEEEEEEET--TEEEEEEEECSSCEEEEEEETTE------EEEEEEEETTSEEEEEETT---CCC----------CSCC
T ss_pred CeEEEEECCC--CceeeeecCCCCCcEEEEECCCC------CceEEecCCCCEEEEEECC---CCcccccccccCCcccc
Confidence 9999999975 55677778899999999999984 5689999999999999964 34433322100000000
Q ss_pred cccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEe-CCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccc--
Q 000054 2424 NTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTV-PNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHT-- 2500 (2548)
Q Consensus 2424 ~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafS-PdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hs-- 2500 (2548)
..++.+... ... -....+|...|.++.|+ |+++.+++++.|+++++||+.+++....+.. |....
T Consensus 235 ----~~~s~~~~~------~~~-~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~-~~~~~~~ 302 (393)
T 4gq1_A 235 ----WLLTLNTLP------LVN-TCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD-STMKLGP 302 (393)
T ss_dssp ----CSEEEESGG------GC-------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------
T ss_pred ----eEEeccccc------cee-eeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee-ecCcccc
Confidence 000000000 000 00125789999999987 7999999999999999999998877665521 11100
Q ss_pred -cccCccc---CCCCceeecEEEEEEcCC--e--EEEEECCCcEEEEECCCCcc
Q 000054 2501 -FLQPSSR---GFGGVVRAGVTDIQVVSR--G--FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2501 -fl~~tl~---GH~~~V~a~VtsLafSPd--G--LaSGS~DGtIrIWDL~sg~l 2546 (2548)
.+.+..+ .+... ....++|. + +++|+.||+|++||+.++..
T Consensus 303 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~ 351 (393)
T 4gq1_A 303 KNLLPNVQGISLFPSL-----LGACPHPRYMDYFATAHSQHGLIQLINTYEKDS 351 (393)
T ss_dssp -CCSCSEEEECSSCCS-----SCCEECSSCTTEEEEEETTTTEEEEEETTCTTC
T ss_pred EEEccccccccccCcc-----eeEEEccCCCCEEEEEECCCCEEEEEECCCCcE
Confidence 0011111 11111 12245543 3 56788899999999988753
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=234.28 Aligned_cols=212 Identities=21% Similarity=0.289 Sum_probs=166.8
Q ss_pred CCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCC--CCEEEEEeccCCC
Q 000054 2268 PYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSS--GSVIAAAGHSSNG 2343 (2548)
Q Consensus 2268 ~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpd--GslLATgG~SS~D 2343 (2548)
.+|.+.|++++|+|+++++++|+.||+|++||+..+... ....+.+|...|.+ |+++ ++++++|+ .|
T Consensus 6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~------~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s---~D 76 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHK------LIDTLTGHEGPVWRVDWAHPKFGTILASCS---YD 76 (753)
T ss_dssp --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEE------EEEEECCCSSCEEEEEECCTTSCSEEEEEE---TT
T ss_pred ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCc------cceeccCCcCceEEEEecCCCCCCEEEEEe---CC
Confidence 347799999999999999999999999999999844211 22457789988875 7777 89999997 89
Q ss_pred CeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCc
Q 000054 2344 INVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSI 2423 (2548)
Q Consensus 2344 GtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~ 2423 (2548)
|.|++||+..+....+..+.+|.+.|++++|+|+. .+..+++|+.||.|++||++. +......
T Consensus 77 g~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~-----~~~~l~sgs~dg~I~vwdl~~---~~~~~~~--------- 139 (753)
T 3jro_A 77 GKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHE-----YGPLLLVASSDGKVSVVEFKE---NGTTSPI--------- 139 (753)
T ss_dssp SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-----GCSEEEEEETTSEEEEEECCS---SSCCCCE---------
T ss_pred CeEEEEECCCCcccccccccCCCCCeEEEEECCCC-----CCCEEEEEeCCCcEEEEEeec---CCCccee---------
Confidence 99999999863223677888999999999999872 146999999999999999653 2111110
Q ss_pred cccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeC-------------CCCEEEEEeCCCcEEEEECCCCcEEE
Q 000054 2424 NTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVP-------------NTSLFLTGSKDGDVKLWDAKAAQLVY 2490 (2548)
Q Consensus 2424 ~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSP-------------dG~~LaSGS~DGtIrIWDl~Tgell~ 2490 (2548)
...+|...|.+++|+| ++.++++|+.||.|++||++++....
T Consensus 140 -------------------------~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~ 194 (753)
T 3jro_A 140 -------------------------IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY 194 (753)
T ss_dssp -------------------------EEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEE
T ss_pred -------------------------EeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccc
Confidence 1157899999999999 58999999999999999998774322
Q ss_pred EecccccccccccCcccCCCCceeecEEEEEEcCC---e--EEEEECCCcEEEEECCCC
Q 000054 2491 HWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSR---G--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2491 tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPd---G--LaSGS~DGtIrIWDL~sg 2544 (2548)
... ..+.+|.+. |++++|+|+ + +++|+.||+|++||+.++
T Consensus 195 ~~~----------~~~~~h~~~----V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 195 VLE----------STLEGHSDW----VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp EEE----------EEECCCSSC----EEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred eee----------eeecCCCCc----EEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence 110 113677754 577799999 7 899999999999999875
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.9e-17 Score=200.47 Aligned_cols=233 Identities=9% Similarity=0.043 Sum_probs=176.2
Q ss_pred EEEEEEcCCCCEE-EEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFF-LVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~L-ASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DGtVrVWD 2299 (2548)
+.+++|+|+|+++ ++++.|+.|++||..+++.+..+.. ...+.+++|+|++++++.+ +.|+.|++||
T Consensus 34 ~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~-----------~~~v~~~~~spdg~~l~~~~~~~~~v~v~d 102 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA-----------GSSPQGVAVSPDGKQVYVTNMASSTLSVID 102 (391)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC-----------SSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC-----------CCCccceEECCCCCEEEEEECCCCEEEEEE
Confidence 5899999999977 5777999999999999988877642 1479999999999988654 5679999999
Q ss_pred cCCCcccccccCccceeccCCcc-cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAM-DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~-~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
+.+++.... +..+.. ...+++|+++.++.++ +.|+.|++||+.+ ++.+..+..| ..+.+++|+|+
T Consensus 103 ~~~~~~~~~--------~~~~~~~~~~~~s~dg~~l~~~~--~~~~~v~~~d~~~--~~~~~~~~~~-~~~~~~~~~~d- 168 (391)
T 1l0q_A 103 TTSNTVAGT--------VKTGKSPLGLALSPDGKKLYVTN--NGDKTVSVINTVT--KAVINTVSVG-RSPKGIAVTPD- 168 (391)
T ss_dssp TTTTEEEEE--------EECSSSEEEEEECTTSSEEEEEE--TTTTEEEEEETTT--TEEEEEEECC-SSEEEEEECTT-
T ss_pred CCCCeEEEE--------EeCCCCcceEEECCCCCEEEEEe--CCCCEEEEEECCC--CcEEEEEecC-CCcceEEECCC-
Confidence 998754322 222322 1235899999875444 3799999999976 5566666654 56799999998
Q ss_pred CCCCCCCCEE-EEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccC---CCCCceEEEcccC
Q 000054 2379 LGSGSVSPLI-VTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKP---GDQNGMLWYIPKA 2452 (2548)
Q Consensus 2379 lg~gs~g~lL-VSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s---~D~sv~Iwdi~~g 2452 (2548)
++.+ ++++.|+.|++||+ .+++.+..+.. ......++++|+|+. ++. .++.+++|+...+
T Consensus 169 ------g~~l~~~~~~~~~v~~~d~---~~~~~~~~~~~-----~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~ 234 (391)
T 1l0q_A 169 ------GTKVYVANFDSMSISVIDT---VTNSVIDTVKV-----EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (391)
T ss_dssp ------SSEEEEEETTTTEEEEEET---TTTEEEEEEEC-----SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred ------CCEEEEEeCCCCEEEEEEC---CCCeEEEEEec-----CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence 5555 78889999999994 45666655421 123456789999986 333 5788999986432
Q ss_pred -------CCCCEEEEEEeCCCCEE-EEEeCCCcEEEEECCCCcEEEEec
Q 000054 2453 -------HLGSVTRISTVPNTSLF-LTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2453 -------H~~~VtsLafSPdG~~L-aSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
....+.+++|+|+++++ ++++.|+.|++||+.+++.+.+++
T Consensus 235 ~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 235 KITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 23457899999999877 677889999999999999998874
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.6e-19 Score=227.44 Aligned_cols=199 Identities=12% Similarity=0.102 Sum_probs=143.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|.+++|+|+|.+||+++.||.|++||... .+..+. |. .......|.+++|+|||++|++|+.||+|++||+.
T Consensus 88 V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~----~~--~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 88 PRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD----SK--GNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC----CS--SCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc----CC--CccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 79999999999999999999999999544 333332 21 00012469999999999999999999999999998
Q ss_pred CCcccccccCccceec----cCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCC-cceee-eccCCCeEEEE
Q 000054 2302 VGGRSNVRPMESCLCF----SSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTS-SRASI-TCHEGGARSIS 2373 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~----~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k-~v~sl-~gHs~~VtSLa 2373 (2548)
++..... .+-...++ .+|...|.+ |+|+| +++++ .|++|++||+...... ..+.+ .+|...|.+++
T Consensus 160 ~~~l~~~-~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass---~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva 233 (588)
T 2j04_A 160 KNSENTP-EFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL---SNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK 233 (588)
T ss_dssp CCTTTCC-CCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE---TTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred CCccccc-cceeeeeeecccccccccEEEEEEcCCc--EEEEe---CCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence 7642110 00012233 677888874 89999 56655 7999999999763211 23456 47889999999
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCC
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAH 2453 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH 2453 (2548)
|+ +. .|++++ +|+|++||+ .+++..... .+|
T Consensus 234 Fs-g~--------~LASa~-~~tIkLWd~---~~~~~~~~~------------------------------------~gh 264 (588)
T 2j04_A 234 IV-DY--------KVVLTC-PGYVHKIDL---KNYSISSLK------------------------------------TGS 264 (588)
T ss_dssp EE-TT--------EEEEEC-SSEEEEEET---TTTEEEEEE------------------------------------CSC
T ss_pred EE-CC--------EEEEEe-CCeEEEEEC---CCCeEEEEE------------------------------------cCC
Confidence 98 42 888887 699999994 444442222 357
Q ss_pred CCCEEEEEE--eCCCCEEEEEeCCCcEEEEECC
Q 000054 2454 LGSVTRIST--VPNTSLFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2454 ~~~VtsLaf--SPdG~~LaSGS~DGtIrIWDl~ 2484 (2548)
.+.|..++| +|++..+++++.||+ ++|...
T Consensus 265 ~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 265 LENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred CceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 777777777 777777777777777 777765
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-18 Score=209.10 Aligned_cols=194 Identities=14% Similarity=0.170 Sum_probs=139.1
Q ss_pred EEEEEEcCC----CCEEEEEEC--------------------CCeEEEEEcC-CCceeEEEeccCCCCCCCCCCCCCeEE
Q 000054 2222 TRAFSSHPL----RPFFLVGSS--------------------NTHIYLWEFG-KDKATATYGVLPAANVPPPYALASISA 2276 (2548)
Q Consensus 2222 V~~VsfSPd----G~~LASGS~--------------------DGsVrLWDl~-tg~~l~t~~~l~ghs~~~~~H~~~Vts 2276 (2548)
+++++++|+ ++++++++. |+.|++|++. +|+.+..+.. |...++.
T Consensus 114 v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~----------~~~~v~~ 183 (356)
T 2w18_A 114 IRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFL----------MPPEETI 183 (356)
T ss_dssp EEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEE----------CCCSSCE
T ss_pred eEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeecc----------CCCceee
Confidence 566666666 666665543 7778888874 4666555543 4477888
Q ss_pred EEEcc---CCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCc---ccEE--EEcCCCCEEEEEec---------
Q 000054 2277 LQFDH---YGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHA---MDVS--YITSSGSVIAAAGH--------- 2339 (2548)
Q Consensus 2277 VaFSP---dG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~---~~V~--afSpdGslLATgG~--------- 2339 (2548)
++|++ ++.+|++|+.|++|++||+++|+.+.. +.+|. ..+. +|+|+|.+++++..
T Consensus 184 l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~t--------L~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laS 255 (356)
T 2w18_A 184 LTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKK--------MHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESL 255 (356)
T ss_dssp EEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEE--------EECCC---CCCEEEEEEETTEEEEEEC----------
T ss_pred EEeeccCCCCceEEEecCCCcEEEEECCCCcEEEE--------EcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeec
Confidence 88888 779999999999999999999975432 33332 2343 48899987743210
Q ss_pred cCCCCeEEEEECCCCCCCcceee-----eccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeee
Q 000054 2340 SSNGINVVVWDTLAPPTSSRASI-----TCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHK 2414 (2548)
Q Consensus 2340 SS~DGtVrIWDl~t~~~k~v~sl-----~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl 2414 (2548)
.+.|++|++||..+ ++.+..+ .+|.+.+.+..++ +.++++|+.||+|+||| +.+++++.++
T Consensus 256 Gs~D~tIklWd~~t--gk~l~v~~~~~p~Gh~~~~lsg~~s---------g~~lASgS~DgTIkIWD---l~tGk~l~tL 321 (356)
T 2w18_A 256 RSPVFQLIVINPKT--TLSVGVMLYCLPPGQAGRFLEGDVK---------DHCAAAILTSGTIAIWD---LLLGQCTALL 321 (356)
T ss_dssp --CCEEEEEEETTT--TEEEEEEEECCCTTCCCCEEEEEEE---------TTEEEEEETTSCEEEEE---TTTCSEEEEE
T ss_pred cCCCcEEEEEECCC--CEEEEEEEeeccCCCcceeEccccC---------CCEEEEEcCCCcEEEEE---CCCCcEEEEe
Confidence 04899999999976 5554443 3676665544443 34899999999999999 6788888887
Q ss_pred cCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEE-EEEEeCCCCEEEEEeCCCcEEEEEC
Q 000054 2415 HSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVT-RISTVPNTSLFLTGSKDGDVKLWDA 2483 (2548)
Q Consensus 2415 ~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vt-sLafSPdG~~LaSGS~DGtIrIWDl 2483 (2548)
++|...+. +++|+|+|++|++|+.|++|+|||+
T Consensus 322 ------------------------------------~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 322 ------------------------------------PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ------------------------------------CCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ------------------------------------cCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 67876554 6899999999999999999999995
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-16 Score=196.69 Aligned_cols=232 Identities=11% Similarity=0.059 Sum_probs=176.7
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEE
Q 000054 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVW 2349 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIW 2349 (2548)
..+.+++|+|++..+++++.|+.|++||+.+++.....+ ...+.+|...|. +++++++++++++ .|+.|++|
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~s~~---~d~~v~~~ 196 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSP---PEKYKKKLGFVETISIPEHNELWVSQM---QANAVHVF 196 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECC---CHHHHTTCCEEEEEEEGGGTEEEEEEG---GGTEEEEE
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecC---cccccccCCceeEEEEcCCCEEEEEEC---CCCEEEEE
Confidence 456789999988888888889999999999886543211 113457777775 3788999999885 79999999
Q ss_pred ECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEE-EEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccc
Q 000054 2350 DTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLI-VTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAH 2428 (2548)
Q Consensus 2350 Dl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lL-VSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~v 2428 (2548)
|++. .+.+..+..|...+.+++|+|+ +..+ ++++.|+.|++||+ .+++.+..+.. ......+
T Consensus 197 d~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~i~~~d~---~~~~~~~~~~~-----~~~~~~~ 259 (433)
T 3bws_A 197 DLKT--LAYKATVDLTGKWSKILLYDPI-------RDLVYCSNWISEDISVIDR---KTKLEIRKTDK-----IGLPRGL 259 (433)
T ss_dssp ETTT--CCEEEEEECSSSSEEEEEEETT-------TTEEEEEETTTTEEEEEET---TTTEEEEECCC-----CSEEEEE
T ss_pred ECCC--ceEEEEEcCCCCCeeEEEEcCC-------CCEEEEEecCCCcEEEEEC---CCCcEEEEecC-----CCCceEE
Confidence 9976 5677888889999999999998 5555 56668999999994 45666655421 1225677
Q ss_pred ccCCCCCC--ccC--------CCCCceEEEccc-------CCCCCEEEEEEeCCCCE-EEEEeCCCcEEEEECCCCcEEE
Q 000054 2429 ADAQTGSG--SKP--------GDQNGMLWYIPK-------AHLGSVTRISTVPNTSL-FLTGSKDGDVKLWDAKAAQLVY 2490 (2548)
Q Consensus 2429 afSpdGk~--v~s--------~D~sv~Iwdi~~-------gH~~~VtsLafSPdG~~-LaSGS~DGtIrIWDl~Tgell~ 2490 (2548)
+++|+|+. ++. .++.+++|+... .|...+.+++|+|+++. +++++.|+.|++||+.+++.+.
T Consensus 260 ~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~ 339 (433)
T 3bws_A 260 LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQK 339 (433)
T ss_dssp EECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEE
Confidence 89999976 222 367888998643 35668899999999975 5667889999999999998887
Q ss_pred EecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEEC---------------CCcEEEEECCCCc
Q 000054 2491 HWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGG---------------DGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2491 tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~---------------DGtIrIWDL~sg~ 2545 (2548)
.++ +. ..+.+++|+|+| +++++. ||.|++||+.++.
T Consensus 340 ~~~---------------~~----~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 340 SIP---------------VF----DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEE---------------CS----SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred Eec---------------CC----CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 662 22 235678999999 666655 5799999998764
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-15 Score=197.32 Aligned_cols=263 Identities=11% Similarity=0.056 Sum_probs=192.9
Q ss_pred EcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc--CCCc
Q 000054 2227 SHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL--EVGG 2304 (2548)
Q Consensus 2227 fSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl--~tgk 2304 (2548)
++|++.++++++.|++|.+||..+++.+.++.. + ..+..++|+|+|+++++++.|++|++||+ .+++
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~---------g--~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~ 213 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT---------G--YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT 213 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEEC---------S--TTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEec---------C--cccceEEECCCCCEEEEECCCCeEEEEECcCCCCc
Confidence 568888999999999999999999999888752 1 23889999999999999999999999999 6654
Q ss_pred ccccccCccceeccCCcc-cEEEEcC----CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeec----------cCC-C
Q 000054 2305 RSNVRPMESCLCFSSHAM-DVSYITS----SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC----------HEG-G 2368 (2548)
Q Consensus 2305 ~i~i~p~~s~~t~~gH~~-~V~afSp----dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g----------Hs~-~ 2368 (2548)
... .+..+.. .-.+++| +|+++++++. .+++|.+||..+ .+++..+.. |.+ .
T Consensus 214 ~~~--------~i~~g~~p~~va~sp~~~~dg~~l~v~~~--~~~~v~v~D~~t--~~~~~~i~~~g~~~~~~~~~~~~~ 281 (543)
T 1nir_A 214 KVA--------EIKIGIEARSVESSKFKGYEDRYTIAGAY--WPPQFAIMDGET--LEPKQIVSTRGMTVDTQTYHPEPR 281 (543)
T ss_dssp EEE--------EEECCSEEEEEEECCSTTCTTTEEEEEEE--ESSEEEEEETTT--CCEEEEEECCEECSSSCCEESCCC
T ss_pred EEE--------EEecCCCcceEEeCCCcCCCCCEEEEEEc--cCCeEEEEeccc--cccceeecccCcccCccccccCCc
Confidence 322 1222222 2225899 9999998862 589999999876 666666654 333 7
Q ss_pred eEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceee--eecCCCCCCCccccccccCCCCCC--c-cCCCCC
Q 000054 2369 ARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKK--HKHSDRGGSSINTCAHADAQTGSG--S-KPGDQN 2443 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~--tl~~~~~~s~~~~~~vafSpdGk~--v-~s~D~s 2443 (2548)
+.++.++|++ ..++++...+|.|.+||+. +++.+. .+. .......+.|+|+|++ + ...+++
T Consensus 282 v~~i~~s~~~------~~~~vs~~~~g~i~vvd~~---~~~~l~~~~i~-----~~~~~~~~~~spdg~~l~va~~~~~~ 347 (543)
T 1nir_A 282 VAAIIASHEH------PEFIVNVKETGKVLLVNYK---DIDNLTVTSIG-----AAPFLHDGGWDSSHRYFMTAANNSNK 347 (543)
T ss_dssp EEEEEECSSS------SEEEEEETTTTEEEEEECT---TSSSCEEEEEE-----CCSSCCCEEECTTSCEEEEEEGGGTE
T ss_pred eEEEEECCCC------CEEEEEECCCCeEEEEEec---CCCcceeEEec-----cCcCccCceECCCCCEEEEEecCCCe
Confidence 8999999984 5678888899999999954 333332 221 1123446789999996 2 345778
Q ss_pred ceEEEccc------------CCCCCEEEEEEeCC-CCEEEEEe-CCCcEEEEECCC-------CcEEEEecccccccccc
Q 000054 2444 GMLWYIPK------------AHLGSVTRISTVPN-TSLFLTGS-KDGDVKLWDAKA-------AQLVYHWSKLHERHTFL 2502 (2548)
Q Consensus 2444 v~Iwdi~~------------gH~~~VtsLafSPd-G~~LaSGS-~DGtIrIWDl~T-------gell~tL~~~Hs~hsfl 2502 (2548)
+.+||... .|.+....+ ++|+ +.++++++ .|++|.+||+.+ +++++++
T Consensus 348 v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l---------- 416 (543)
T 1nir_A 348 VAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAEL---------- 416 (543)
T ss_dssp EEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEE----------
T ss_pred EEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEE----------
Confidence 99998532 154444333 5787 67777776 689999999998 8888877
Q ss_pred cCcccCCCCceeecEEEEEEcCCe--EEEEE-------CCCcEEEEECCCCc
Q 000054 2503 QPSSRGFGGVVRAGVTDIQVVSRG--FLSCG-------GDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2503 ~~tl~GH~~~V~a~VtsLafSPdG--LaSGS-------~DGtIrIWDL~sg~ 2545 (2548)
.+|++.+ ..++++|+| |++++ .+++|.+||+.++.
T Consensus 417 ----~~~g~~~----~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 417 ----QGQGGGS----LFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 460 (543)
T ss_dssp ----ECSCSCC----CCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred ----EcCCCCc----eEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC
Confidence 4555332 345899999 66665 27899999998764
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.67 E-value=9.8e-15 Score=184.19 Aligned_cols=223 Identities=11% Similarity=0.078 Sum_probs=162.8
Q ss_pred CCEEEEEECC------CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC---cEEEEEcC
Q 000054 2231 RPFFLVGSSN------THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG---TVCTWQLE 2301 (2548)
Q Consensus 2231 G~~LASGS~D------GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG---tVrVWDl~ 2301 (2548)
+..++.++.+ +.|++||.+.+. ...+.. |.+.|.+++|+|+|++|++++.|+ .|++||++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~~----------~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~ 211 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVHR----------SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA 211 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEEE----------ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCC-CEEEeC----------CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECC
Confidence 5556655543 799999997543 444432 447899999999999999999885 99999999
Q ss_pred CCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCC--eEEEEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGI--NVVVWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DG--tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
+++... +..|...+. +|+|+|+.|+..+ +.++ .|++||+.+ ++ ...+..|...+.+++|+|+
T Consensus 212 tg~~~~---------l~~~~~~~~~~~~spdg~~la~~~--~~~g~~~i~~~d~~~--~~-~~~l~~~~~~~~~~~~spd 277 (415)
T 2hqs_A 212 NGAVRQ---------VASFPRHNGAPAFSPDGSKLAFAL--SKTGSLNLYVMDLAS--GQ-IRQVTDGRSNNTEPTWFPD 277 (415)
T ss_dssp TCCEEE---------EECCSSCEEEEEECTTSSEEEEEE--CTTSSCEEEEEETTT--CC-EEECCCCSSCEEEEEECTT
T ss_pred CCcEEE---------eecCCCcccCEEEcCCCCEEEEEE--ecCCCceEEEEECCC--CC-EEeCcCCCCcccceEECCC
Confidence 875422 334444554 4999999888443 2444 599999975 33 3567788899999999999
Q ss_pred CCCCCCCCCEEEEEeC-CC--cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000054 2378 DLGSGSVSPLIVTGGK-GG--DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~-DG--tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
++.|++++. +| .|.+||+ .+++.. .+ ..|.
T Consensus 278 -------g~~l~~~s~~~g~~~i~~~d~---~~~~~~-~l------------------------------------~~~~ 310 (415)
T 2hqs_A 278 -------SQNLAFTSDQAGRPQVYKVNI---NGGAPQ-RI------------------------------------TWEG 310 (415)
T ss_dssp -------SSEEEEEECTTSSCEEEEEET---TSSCCE-EC------------------------------------CCSS
T ss_pred -------CCEEEEEECCCCCcEEEEEEC---CCCCEE-EE------------------------------------ecCC
Confidence 778887775 55 5666673 344322 21 3356
Q ss_pred CCEEEEEEeCCCCEEEEEeCC---CcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEE
Q 000054 2455 GSVTRISTVPNTSLFLTGSKD---GDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLS 2529 (2548)
Q Consensus 2455 ~~VtsLafSPdG~~LaSGS~D---GtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaS 2529 (2548)
..+.+++|+|+|++|++++.+ +.|++||+.+++... + ..|. .+.+++|+|+| |++
T Consensus 311 ~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l--------------~~~~-----~~~~~~~spdg~~l~~ 370 (415)
T 2hqs_A 311 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-L--------------SSTF-----LDETPSLAPNGTMVIY 370 (415)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-C--------------CCSS-----SCEEEEECTTSSEEEE
T ss_pred CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-e--------------cCCC-----CcCCeEEcCCCCEEEE
Confidence 678899999999999988764 589999999988743 3 2332 24667999999 777
Q ss_pred EECCC---cEEEEECCCCc
Q 000054 2530 CGGDG---SVKLIQLEDYQ 2545 (2548)
Q Consensus 2530 GS~DG---tIrIWDL~sg~ 2545 (2548)
++.|+ .|++||++++.
T Consensus 371 ~s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 371 SSSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEEETTEEEEEEEETTSCC
T ss_pred EEcCCCccEEEEEECCCCc
Confidence 77776 79999998764
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-14 Score=190.19 Aligned_cols=286 Identities=11% Similarity=0.025 Sum_probs=196.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEc--CCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc----CCCEEEEEeC-CCc
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEF--GKDKATATYGVLPAANVPPPYALASISALQFDH----YGHRFASAAL-DGT 2294 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl--~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP----dG~~LaSGS~-DGt 2294 (2548)
+..++|+|+|++|++++.|++|++||+ .+++.+.++.. ...+..++|+| +|+++++++. +++
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-----------g~~p~~va~sp~~~~dg~~l~v~~~~~~~ 249 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-----------GIEARSVESSKFKGYEDRYTIAGAYWPPQ 249 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-----------CSEEEEEEECCSTTCTTTEEEEEEEESSE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-----------CCCcceEEeCCCcCCCCCEEEEEEccCCe
Confidence 468889999999999999999999999 78887777642 25689999999 9999999885 899
Q ss_pred EEEEEcCCCcccccccCccceeccC---Ccc-cEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcce--eeeccC
Q 000054 2295 VCTWQLEVGGRSNVRPMESCLCFSS---HAM-DVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA--SITCHE 2366 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~~t~~g---H~~-~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~--sl~gHs 2366 (2548)
|.+||..+++.+...+... ..... |.. .+. .+++++..++++. ..++.|.+||.... +.+. .+ .+.
T Consensus 250 v~v~D~~t~~~~~~i~~~g-~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~--~~~g~i~vvd~~~~--~~l~~~~i-~~~ 323 (543)
T 1nir_A 250 FAIMDGETLEPKQIVSTRG-MTVDTQTYHPEPRVAAIIASHEHPEFIVNV--KETGKVLLVNYKDI--DNLTVTSI-GAA 323 (543)
T ss_dssp EEEEETTTCCEEEEEECCE-ECSSSCCEESCCCEEEEEECSSSSEEEEEE--TTTTEEEEEECTTS--SSCEEEEE-ECC
T ss_pred EEEEeccccccceeecccC-cccCccccccCCceEEEEECCCCCEEEEEE--CCCCeEEEEEecCC--CcceeEEe-ccC
Confidence 9999998876544322100 00000 222 343 3788777666554 48999999999763 3222 33 456
Q ss_pred CCeEEEEEccCCCCCCCCCCEEE-EEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCC-CCC-cc--CCC
Q 000054 2367 GGARSISVFDNDLGSGSVSPLIV-TGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQT-GSG-SK--PGD 2441 (2548)
Q Consensus 2367 ~~VtSLafsP~dlg~gs~g~lLV-SGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpd-Gk~-v~--s~D 2441 (2548)
..+..+.|+|+ +++++ ++..+++|.+|| ..+++++..+...... ........++|+ |.. +. ..+
T Consensus 324 ~~~~~~~~spd-------g~~l~va~~~~~~v~v~D---~~tg~l~~~i~~g~~p-h~g~g~~~~~p~~g~~~~s~~~~d 392 (543)
T 1nir_A 324 PFLHDGGWDSS-------HRYFMTAANNSNKVAVID---SKDRRLSALVDVGKTP-HPGRGANFVHPKYGPVWSTSHLGD 392 (543)
T ss_dssp SSCCCEEECTT-------SCEEEEEEGGGTEEEEEE---TTTTEEEEEEECSSSB-CCTTCEEEEETTTEEEEEEEBSSS
T ss_pred cCccCceECCC-------CCEEEEEecCCCeEEEEE---CCCCeEEEeeccCCCC-CCCCCcccCCCCCccEEEeccCCC
Confidence 77889999998 67655 555689999999 6678887766321110 000111123566 444 22 256
Q ss_pred CCceEEEccc---------------CCCCCEEEEEEeCCCCEEEEEe-------CCCcEEEEECCCCcEE-EEeccc-cc
Q 000054 2442 QNGMLWYIPK---------------AHLGSVTRISTVPNTSLFLTGS-------KDGDVKLWDAKAAQLV-YHWSKL-HE 2497 (2548)
Q Consensus 2442 ~sv~Iwdi~~---------------gH~~~VtsLafSPdG~~LaSGS-------~DGtIrIWDl~Tgell-~tL~~~-Hs 2497 (2548)
+++.+|++.. +|.+.+..++++|+|++|++++ .+++|.|||+.+++.. ..++-. ..
T Consensus 393 ~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~ 472 (543)
T 1nir_A 393 GSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWA 472 (543)
T ss_dssp SEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHH
T ss_pred ceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhc
Confidence 8889998643 3566778899999999999987 2789999999998876 433100 00
Q ss_pred ccccccCcccCCCCceeecEEEEEEcCCe--EE-EEE----CCCcEEEEECCCCcc
Q 000054 2498 RHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FL-SCG----GDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2498 ~hsfl~~tl~GH~~~V~a~VtsLafSPdG--La-SGS----~DGtIrIWDL~sg~l 2546 (2548)
+ +..++. .+..++|+|+| ++ +.. .|++|.|||..++.+
T Consensus 473 ~-------~~~~~~----~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~ 517 (543)
T 1nir_A 473 D-------LGEGAK----RVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL 517 (543)
T ss_dssp C-------CCSSCC----EEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred c-------cCCCCC----ceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence 0 122332 35677999999 43 432 489999999998754
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-14 Score=169.51 Aligned_cols=263 Identities=9% Similarity=0.029 Sum_probs=180.2
Q ss_pred CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCC-CeEEEEEccCCCEE-EEEeCCCcEEEEEcCCCcccccc
Q 000054 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALA-SISALQFDHYGHRF-ASAALDGTVCTWQLEVGGRSNVR 2309 (2548)
Q Consensus 2232 ~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~-~VtsVaFSPdG~~L-aSGS~DGtVrVWDl~tgk~i~i~ 2309 (2548)
+++++++.++.|++||..+++.+..+.. . +.. .+..++|+|+|+++ +++..++.|.+||+.+++.....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~--------~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 72 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITI-A--------DAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI 72 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEEC-T--------TCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEc-C--------CCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeE
Confidence 4788999999999999999988877642 1 101 47889999999866 45566789999999887643221
Q ss_pred cCccceeccCCcccEEEEcCCCCEEEEEeccC---------CCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCC
Q 000054 2310 PMESCLCFSSHAMDVSYITSSGSVIAAAGHSS---------NGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLG 2380 (2548)
Q Consensus 2310 p~~s~~t~~gH~~~V~afSpdGslLATgG~SS---------~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg 2380 (2548)
+....... +....-..++|+|+.++++.... .++.|.+||+.+ .+.+..+.. ...+.+++|+|+
T Consensus 73 ~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~-~~~~~~~~~s~d--- 145 (337)
T 1pby_B 73 DLSTPEER-VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET--LSRRKAFEA-PRQITMLAWARD--- 145 (337)
T ss_dssp ECCBTTEE-EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT--TEEEEEEEC-CSSCCCEEECTT---
T ss_pred EcCCcccc-cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCC--CcEEEEEeC-CCCcceeEECCC---
Confidence 11000000 00112235899999888873100 268999999975 455555543 456788999998
Q ss_pred CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCC---CC---------------
Q 000054 2381 SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPG---DQ--------------- 2442 (2548)
Q Consensus 2381 ~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~---D~--------------- 2442 (2548)
++.++++ ++.|.+|| ..+++....+..... .....++|+|+.+... ++
T Consensus 146 ----g~~l~~~--~~~i~~~d---~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~ 211 (337)
T 1pby_B 146 ----GSKLYGL--GRDLHVMD---PEAGTLVEDKPIQSW-----EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDP 211 (337)
T ss_dssp ----SSCEEEE--SSSEEEEE---TTTTEEEEEECSTTT-----TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCT
T ss_pred ----CCEEEEe--CCeEEEEE---CCCCcEeeeeecccc-----CCCceeCCCccEEeeeccCCCceeeeeecccccccc
Confidence 6666666 68999999 556776655522110 1234778888763211 11
Q ss_pred --------CceEEEccc---------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCc
Q 000054 2443 --------NGMLWYIPK---------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPS 2505 (2548)
Q Consensus 2443 --------sv~Iwdi~~---------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~t 2505 (2548)
.+.+|+... .+...+.+++|+|+|++++++ ++.|.+||+.+++.+..+.
T Consensus 212 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~------------ 277 (337)
T 1pby_B 212 ADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP------------ 277 (337)
T ss_dssp TSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE------------
T ss_pred ccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec------------
Confidence 245666432 344567889999999999988 7999999999999887662
Q ss_pred ccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2506 SRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2506 l~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.++ .+.+++|+|+| +++++.|+.|++||+.++.
T Consensus 278 -~~~------~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 278 -LPH------SYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp -CSS------CCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred -CCC------ceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence 111 13567999999 7778889999999998764
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-14 Score=170.34 Aligned_cols=274 Identities=9% Similarity=-0.013 Sum_probs=180.0
Q ss_pred EcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC-CCcEEEEEcCCCc
Q 000054 2227 SHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DGTVCTWQLEVGG 2304 (2548)
Q Consensus 2227 fSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-DGtVrVWDl~tgk 2304 (2548)
|.+++. .+++++.++.|++||..+++....+.. +...+ .++|+|+|+++++++. ++.|.+||+.+++
T Consensus 5 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~----------~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~ 73 (331)
T 3u4y_A 5 FQTTSNFGIVVEQHLRRISFFSTDTLEILNQITL----------GYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEP 73 (331)
T ss_dssp --CCCCEEEEEEGGGTEEEEEETTTCCEEEEEEC----------CCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSS
T ss_pred EcCCCCEEEEEecCCCeEEEEeCcccceeeeEEc----------cCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 345444 466788999999999999988777642 12456 9999999997776665 8999999998875
Q ss_pred c-cccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCC-C--eEEEEECCCCCCCcceeeeccCCCeEEEEEccCC
Q 000054 2305 R-SNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNG-I--NVVVWDTLAPPTSSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2305 ~-i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~D-G--tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
. .. ....+.... .+++|+|++++++. .+ + .|.+||+.. .+.+..+.. .....+++|+|++
T Consensus 74 ~~~~--------~~~~~~~~~~~~~~s~dg~~l~~~~---~~~~~~~i~v~d~~~--~~~~~~~~~-~~~~~~~~~spdg 139 (331)
T 3u4y_A 74 PKVV--------AIQEGQSSMADVDITPDDQFAVTVT---GLNHPFNMQSYSFLK--NKFISTIPI-PYDAVGIAISPNG 139 (331)
T ss_dssp CEEE--------EEEECSSCCCCEEECTTSSEEEECC---CSSSSCEEEEEETTT--TEEEEEEEC-CTTEEEEEECTTS
T ss_pred eeEE--------ecccCCCCccceEECCCCCEEEEec---CCCCcccEEEEECCC--CCeEEEEEC-CCCccceEECCCC
Confidence 3 11 122222222 35899999988542 33 3 899999976 455555543 4567999999993
Q ss_pred CCCCCCCCEEEEEeCCCc-EEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC---ccCCCCCceEEEcccCC-
Q 000054 2379 LGSGSVSPLIVTGGKGGD-VGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG---SKPGDQNGMLWYIPKAH- 2453 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGt-VrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~---v~s~D~sv~Iwdi~~gH- 2453 (2548)
..+++++..++. |.+||+.. .+...... ............+.++|+|+. ....++.+.+|++..+.
T Consensus 140 ------~~l~~~~~~~~~~i~~~~~~~--~g~~~~~~-~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 140 ------NGLILIDRSSANTVRRFKIDA--DGVLFDTG-QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp ------SCEEEEEETTTTEEEEEEECT--TCCEEEEE-EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred ------CEEEEEecCCCceEEEEEECC--CCcEeecC-CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 236666677788 99999642 22221110 000011122456789999985 33456788999864322
Q ss_pred ---------CCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCcE--EEEecccccccccccCcccCCCCceeecEEEEE
Q 000054 2454 ---------LGSVTRISTVPNTSLFLTGS-KDGDVKLWDAKAAQL--VYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQ 2521 (2548)
Q Consensus 2454 ---------~~~VtsLafSPdG~~LaSGS-~DGtIrIWDl~Tgel--l~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLa 2521 (2548)
...+..++|+|+|++++.++ .++.|.+||+.+++. +..+... +..+.... ..+..++
T Consensus 211 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~----------~~~~~~~~-~~~~~~~ 279 (331)
T 3u4y_A 211 ITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHG----------LLIDPRPL-FGANQMA 279 (331)
T ss_dssp CEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECC----------CCCCCGGG-TTCCCEE
T ss_pred cceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccc----------cccCCCCc-ccccceE
Confidence 24567899999999776665 578999999999887 4444210 00111111 1124569
Q ss_pred EcCCe--E-EEEECCCcEEEEECCCCc
Q 000054 2522 VVSRG--F-LSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2522 fSPdG--L-aSGS~DGtIrIWDL~sg~ 2545 (2548)
|+|+| | +++..++.|++||+.+..
T Consensus 280 ~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 280 LNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred ECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 99999 5 455667799999998764
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-14 Score=172.20 Aligned_cols=260 Identities=8% Similarity=0.064 Sum_probs=168.7
Q ss_pred EEEEEECCCeEEEEEcCC-CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC-CcEEEEEcC--CCccccc
Q 000054 2233 FFLVGSSNTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD-GTVCTWQLE--VGGRSNV 2308 (2548)
Q Consensus 2233 ~LASGS~DGsVrLWDl~t-g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D-GtVrVWDl~--tgk~i~i 2308 (2548)
++++++.|+.|++||++. ++. ..+.... |...+.+++|+|+|+++++++.+ +.|.+|+++ ++.....
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~ 77 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGAL-TLTQVVD--------VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFA 77 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCE-EEEEEEE--------CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred EEEeCCCCCeEEEEEECCCCcE-EEeeeEe--------cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeec
Confidence 344457899999999963 322 2221111 33678899999999999998887 999999997 4432111
Q ss_pred ccCccceeccCCc-ccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCC-CCcceeeeccCCCeEEEEEccCCCCCCCCCC
Q 000054 2309 RPMESCLCFSSHA-MDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPP-TSSRASITCHEGGARSISVFDNDLGSGSVSP 2386 (2548)
Q Consensus 2309 ~p~~s~~t~~gH~-~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~-~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~ 2386 (2548)
..+..+. ..-.+++|+|+.+++++ ..++.|.+||+..+. .+.+..+.. ...+.+++|+|+ ++
T Consensus 78 ------~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~d-------g~ 141 (343)
T 1ri6_A 78 ------AESALPGSLTHISTDHQGQFVFVGS--YNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPD-------NR 141 (343)
T ss_dssp ------EEEECSSCCSEEEECTTSSEEEEEE--TTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTT-------SS
T ss_pred ------cccccCCCCcEEEEcCCCCEEEEEe--cCCCeEEEEECCCCccccccccccC-CCCceEEEECCC-------CC
Confidence 1122222 22235899999887776 358999999994210 223334433 346889999998 66
Q ss_pred EEEEEe-CCCcEEEEeCCcccc-Cceee----eecCCCCCCCccccccccCCCCCC--c-cCCCCCceEEEccc------
Q 000054 2387 LIVTGG-KGGDVGIHDFRYIAT-GKTKK----HKHSDRGGSSINTCAHADAQTGSG--S-KPGDQNGMLWYIPK------ 2451 (2548)
Q Consensus 2387 lLVSGS-~DGtVrLWDLR~l~T-Gk~l~----tl~~~~~~s~~~~~~vafSpdGk~--v-~s~D~sv~Iwdi~~------ 2451 (2548)
.+++++ .++.|++||+. + ++... ..... .......++++|+|+. + ...++.+.+|++..
T Consensus 142 ~l~~~~~~~~~v~~~d~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~ 215 (343)
T 1ri6_A 142 TLWVPALKQDRICLFTVS---DDGHLVAQDPAEVTTV---EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE 215 (343)
T ss_dssp EEEEEEGGGTEEEEEEEC---TTSCEEEEEEEEEECS---TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE
T ss_pred EEEEecCCCCEEEEEEec---CCCceeeecccccccC---CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEE
Confidence 677666 89999999953 3 43321 11111 1123345789999985 2 33677889998621
Q ss_pred ----------CC--CCCEEEEEEeCCCCEEEEE-eCCCcEEEEECC--CC--cEEEEecccccccccccCcccCCCCcee
Q 000054 2452 ----------AH--LGSVTRISTVPNTSLFLTG-SKDGDVKLWDAK--AA--QLVYHWSKLHERHTFLQPSSRGFGGVVR 2514 (2548)
Q Consensus 2452 ----------gH--~~~VtsLafSPdG~~LaSG-S~DGtIrIWDl~--Tg--ell~tL~~~Hs~hsfl~~tl~GH~~~V~ 2514 (2548)
++ ...+..++|+|+|++|+.+ ..|+.|++||+. ++ +.+..+ ..+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~--------------~~~~~--- 278 (343)
T 1ri6_A 216 CVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ--------------PTETQ--- 278 (343)
T ss_dssp EEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE--------------ECSSS---
T ss_pred EEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee--------------cCCCc---
Confidence 11 2356689999999887754 579999999998 33 333333 22221
Q ss_pred ecEEEEEEcCCe--EEEEE-CCCcEEEEECC
Q 000054 2515 AGVTDIQVVSRG--FLSCG-GDGSVKLIQLE 2542 (2548)
Q Consensus 2515 a~VtsLafSPdG--LaSGS-~DGtIrIWDL~ 2542 (2548)
+.+++|+|+| +++++ .|+.|.+|+++
T Consensus 279 --~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 279 --PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp --CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred --cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 3456999999 66555 68999999554
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-14 Score=165.75 Aligned_cols=230 Identities=13% Similarity=0.074 Sum_probs=160.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCC-CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe--CCCcEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGK-DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA--LDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~t-g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS--~DGtVrVW 2298 (2548)
+.+++|+|+|+++++++ ++.|++||+.+ ++....... .+...|.+++|+|+++++++++ .++.+.+|
T Consensus 44 v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~---------~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~ 113 (297)
T 2ojh_A 44 FEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTG---------FATICNNDHGISPDGALYAISDKVEFGKSAIY 113 (297)
T ss_dssp CEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCT---------TCCCBCSCCEECTTSSEEEEEECTTTSSCEEE
T ss_pred eEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccc---------cccccccceEECCCCCEEEEEEeCCCCcceEE
Confidence 58899999999999976 78999999998 765544321 1236788999999999999998 44566776
Q ss_pred EcC--CCcccccccCccceeccCCcc-cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEc
Q 000054 2299 QLE--VGGRSNVRPMESCLCFSSHAM-DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2299 Dl~--tgk~i~i~p~~s~~t~~gH~~-~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafs 2375 (2548)
.++ ++... .+..+.. ....|+|+++.++.++ +.++.+++|++... ......+..|...+.++.|+
T Consensus 114 ~~~~~~~~~~---------~~~~~~~~~~~~~spdg~~l~~~~--~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~s 181 (297)
T 2ojh_A 114 LLPSTGGTPR---------LMTKNLPSYWHGWSPDGKSFTYCG--IRDQVFDIYSMDID-SGVETRLTHGEGRNDGPDYS 181 (297)
T ss_dssp EEETTCCCCE---------ECCSSSSEEEEEECTTSSEEEEEE--EETTEEEEEEEETT-TCCEEECCCSSSCEEEEEEC
T ss_pred EEECCCCceE---------EeecCCCccceEECCCCCEEEEEE--CCCCceEEEEEECC-CCcceEcccCCCccccceEC
Confidence 664 33211 1222222 1225999999887433 27899999997543 23445666788899999999
Q ss_pred cCCCCCCCCCCEEEEEe-CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000054 2376 DNDLGSGSVSPLIVTGG-KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS-~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
|+ ++.++.++ .++.+++|+++. .+.....+ ..|.
T Consensus 182 ~d-------g~~l~~~~~~~~~~~i~~~~~--~~~~~~~~------------------------------------~~~~ 216 (297)
T 2ojh_A 182 PD-------GRWIYFNSSRTGQMQIWRVRV--DGSSVERI------------------------------------TDSA 216 (297)
T ss_dssp TT-------SSEEEEEECTTSSCEEEEEET--TSSCEEEC------------------------------------CCCS
T ss_pred CC-------CCEEEEEecCCCCccEEEECC--CCCCcEEE------------------------------------ecCC
Confidence 98 66666655 699999999541 22233332 4566
Q ss_pred CCEEEEEEeCCCCEEEEEeCC-----------CcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEc
Q 000054 2455 GSVTRISTVPNTSLFLTGSKD-----------GDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVV 2523 (2548)
Q Consensus 2455 ~~VtsLafSPdG~~LaSGS~D-----------GtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafS 2523 (2548)
..+.+++|+|+|++|++++.+ +.|.+||+.+++...... +.+|...+ .+++|+
T Consensus 217 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~------------~~~~~~~~----~~~~~s 280 (297)
T 2ojh_A 217 YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD------------LFGGQGTM----NSPNWS 280 (297)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE------------EEESTTTS----CSCCBC
T ss_pred cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec------------cCCCCccc----ccceEC
Confidence 788999999999999988876 569999999876543221 13454433 345899
Q ss_pred CCe--EEEEECCC
Q 000054 2524 SRG--FLSCGGDG 2534 (2548)
Q Consensus 2524 PdG--LaSGS~DG 2534 (2548)
|+| |++++.|.
T Consensus 281 pdg~~l~~~~~~~ 293 (297)
T 2ojh_A 281 PDGDEFAYVRYFP 293 (297)
T ss_dssp TTSSEEEEEEECC
T ss_pred CCCCEEEEEEecc
Confidence 999 66665543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-14 Score=194.39 Aligned_cols=245 Identities=10% Similarity=0.036 Sum_probs=166.6
Q ss_pred EEEEEEcCCCCEEEEEEC-CC-----eEEEEEcCCCceeEEEeccCCC-----------CCCCCCC---CCCeEEEEEcc
Q 000054 2222 TRAFSSHPLRPFFLVGSS-NT-----HIYLWEFGKDKATATYGVLPAA-----------NVPPPYA---LASISALQFDH 2281 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~-DG-----sVrLWDl~tg~~l~t~~~l~gh-----------s~~~~~H---~~~VtsVaFSP 2281 (2548)
+..++|+|||++|++++. |+ .|++||+.+++....+...... ..+...+ ...|.+++|+|
T Consensus 39 ~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Sp 118 (741)
T 2ecf_A 39 LMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSP 118 (741)
T ss_dssp CEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECT
T ss_pred CCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECC
Confidence 588999999999999988 88 8999999998876665321110 0000000 02378999999
Q ss_pred CCCEEEEEeCCCcEEEEEcCCC---cccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCC
Q 000054 2282 YGHRFASAALDGTVCTWQLEVG---GRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPT 2356 (2548)
Q Consensus 2282 dG~~LaSGS~DGtVrVWDl~tg---k~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~ 2356 (2548)
||++|++++. +.|.+||+.++ ... .+..|...+. .|+|||+.|+++. ++.|++||+.. +
T Consensus 119 Dg~~l~~~~~-~~i~~~d~~~~~~~~~~---------~l~~~~~~~~~~~~SPDG~~la~~~----~~~i~~~d~~~--g 182 (741)
T 2ecf_A 119 DAQRLLFPLG-GELYLYDLKQEGKAAVR---------QLTHGEGFATDAKLSPKGGFVSFIR----GRNLWVIDLAS--G 182 (741)
T ss_dssp TSSEEEEEET-TEEEEEESSSCSTTSCC---------BCCCSSSCEEEEEECTTSSEEEEEE----TTEEEEEETTT--T
T ss_pred CCCEEEEEeC-CcEEEEECCCCCcceEE---------EcccCCcccccccCCCCCCEEEEEe----CCcEEEEecCC--C
Confidence 9999999987 99999999877 321 1334444454 4999999999974 67999999975 3
Q ss_pred CcceeeeccCCC----------------eEEEEEccCCCCCCCCCCEEEEEeCCC-------------------------
Q 000054 2357 SSRASITCHEGG----------------ARSISVFDNDLGSGSVSPLIVTGGKGG------------------------- 2395 (2548)
Q Consensus 2357 k~v~sl~gHs~~----------------VtSLafsP~dlg~gs~g~lLVSGS~DG------------------------- 2395 (2548)
+.......+... +.++.|+|+ ++.|++++.|+
T Consensus 183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpD-------g~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (741)
T 2ecf_A 183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPD-------DSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPA 255 (741)
T ss_dssp EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTT-------SSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred CEEEeccCCccceeccccceeeeeccccccceEECCC-------CCEEEEEEEcCCCCceEecCCCCCCcccceEeecCC
Confidence 333333333322 478999999 77888877654
Q ss_pred --------cEEEEeCCcccc-CceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCC
Q 000054 2396 --------DVGIHDFRYIAT-GKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNT 2466 (2548)
Q Consensus 2396 --------tVrLWDLR~l~T-Gk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG 2466 (2548)
.|.+|| +.+ ++.... .....|...+..++| |||
T Consensus 256 ~g~~~~~~~l~~~d---~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~-pDg 297 (741)
T 2ecf_A 256 AGDANVQVKLGVIS---PAEQAQTQWI----------------------------------DLGKEQDIYLARVNW-RDP 297 (741)
T ss_dssp TTSCCCEEEEEEEC---SSTTCCCEEE----------------------------------CCCSCSSEEEEEEEE-EET
T ss_pred CCCCCCeeEEEEEE---CCCCCceEEe----------------------------------cCCCCcceEEEEEEe-CCC
Confidence 333444 122 221111 001247788999999 999
Q ss_pred CEEEEEeC-----CCcEEEEECCCCcEEEEecccccccccccCcccCCC-CceeecEEEEEEcCCe--EEEEECCCcEEE
Q 000054 2467 SLFLTGSK-----DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFG-GVVRAGVTDIQVVSRG--FLSCGGDGSVKL 2538 (2548)
Q Consensus 2467 ~~LaSGS~-----DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~-~~V~a~VtsLafSPdG--LaSGS~DGtIrI 2538 (2548)
++|++++. ++.|++||+.+++....+. .+. ..+ ..+.+++|+||| +++++.||.+++
T Consensus 298 ~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~~~~~-~~~~~~~~spdg~~~~~~~~~g~~~l 362 (741)
T 2ecf_A 298 QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH--------------ETSPTWV-PLHNSLRFLDDGSILWSSERTGFQHL 362 (741)
T ss_dssp TEEEEEEEETTSSEEEEEEEETTTCCEEEEEE--------------EECSSCC-CCCSCCEECTTSCEEEEECTTSSCEE
T ss_pred CEEEEEEecccCCeEEEEEEECCCCceEEEEE--------------cCCCCcC-CcCCceEECCCCeEEEEecCCCccEE
Confidence 99987764 5689999999998876552 111 111 012345899999 678889998888
Q ss_pred EECC
Q 000054 2539 IQLE 2542 (2548)
Q Consensus 2539 WDL~ 2542 (2548)
|.++
T Consensus 363 ~~~~ 366 (741)
T 2ecf_A 363 YRID 366 (741)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8775
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-13 Score=166.16 Aligned_cols=248 Identities=9% Similarity=0.036 Sum_probs=177.9
Q ss_pred EEEEEEcCCCCEEEEEEC-------CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEE-EeCCC
Q 000054 2222 TRAFSSHPLRPFFLVGSS-------NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFAS-AALDG 2293 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~-------DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaS-GS~DG 2293 (2548)
...++++|+|+++++++. ++.|.+||..+++.+..+.. ...+..++|+|+|+++++ +..++
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-----------~~~~~~~~~s~dg~~l~v~~~~~~ 111 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-----------DLKPFGATINNTTQTLWFGNTVNS 111 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-----------SSCCCSEEEETTTTEEEEEETTTT
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-----------CCCcceEEECCCCCEEEEEecCCC
Confidence 478899999998887763 56899999999988877753 134678999999996555 45579
Q ss_pred cEEEEEcCCCcccccccCccceec-cCCc--ccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeE
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCF-SSHA--MDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGAR 2370 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~-~gH~--~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~Vt 2370 (2548)
.|.+||..+++.....+....... .... ..-..++|+|+.+++++.. .++.|.+||..+ .+.+..+..+...+.
T Consensus 112 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-~~~~i~~~d~~~--~~~~~~~~~~~~~~~ 188 (353)
T 3vgz_A 112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIG-KESVIWVVDGGN--IKLKTAIQNTGKMST 188 (353)
T ss_dssp EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEES-SSCEEEEEETTT--TEEEEEECCCCTTCC
T ss_pred EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecC-CCceEEEEcCCC--CceEEEecCCCCccc
Confidence 999999998864332211000000 0000 1113589999987776422 578999999976 556666665666788
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcc
Q 000054 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP 2450 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~ 2450 (2548)
++.|+|+ ++.+++++.++.|.+|| ..+++.+..+... .
T Consensus 189 ~~~~s~d-------g~~l~~~~~~~~i~~~d---~~~~~~~~~~~~~--------------------------------~ 226 (353)
T 3vgz_A 189 GLALDSE-------GKRLYTTNADGELITID---TADNKILSRKKLL--------------------------------D 226 (353)
T ss_dssp CCEEETT-------TTEEEEECTTSEEEEEE---TTTTEEEEEEECC--------------------------------C
T ss_pred eEEECCC-------CCEEEEEcCCCeEEEEE---CCCCeEEEEEEcC--------------------------------C
Confidence 9999998 77899999999999999 5566665554100 0
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe---
Q 000054 2451 KAHLGSVTRISTVPNTSLFLTGSK-DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--- 2526 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~-DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--- 2526 (2548)
.++...+.+++|+|+|++++.++. ++.|.+||..+++.+..++ .+.. ..++|+|+|
T Consensus 227 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------------~~~~-------~~~~~s~dg~~l 286 (353)
T 3vgz_A 227 DGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA-------------APES-------LAVLFNPARNEA 286 (353)
T ss_dssp SSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE-------------CSSC-------CCEEEETTTTEE
T ss_pred CCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE-------------cCCC-------ceEEECCCCCEE
Confidence 235667889999999997777665 5999999999999988773 1111 235899998
Q ss_pred EEEEECCCcEEEEECCCCc
Q 000054 2527 FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2527 LaSGS~DGtIrIWDL~sg~ 2545 (2548)
++++..++.|.+||+.++.
T Consensus 287 ~v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 287 YVTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp EEEETTTTEEEEEETTTTE
T ss_pred EEEECCCCeEEEEECCCCe
Confidence 4455579999999998764
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-13 Score=173.80 Aligned_cols=212 Identities=12% Similarity=0.075 Sum_probs=157.6
Q ss_pred EEEEEEcCCCCEEEEEECCC---eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEE-EEeCCCc--E
Q 000054 2222 TRAFSSHPLRPFFLVGSSNT---HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALDGT--V 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DG---sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~La-SGS~DGt--V 2295 (2548)
+.+++|+|+|++|++++.++ .|++||+.+++... +.. |.+.+.+++|+|+|++|+ +++.||. |
T Consensus 181 v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~----------~~~~~~~~~~spdg~~la~~~~~~g~~~i 249 (415)
T 2hqs_A 181 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VAS----------FPRHNGAPAFSPDGSKLAFALSKTGSLNL 249 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EEC----------CSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred ceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-eec----------CCCcccCEEEcCCCCEEEEEEecCCCceE
Confidence 68999999999999999885 99999999987653 321 336899999999999888 6666665 8
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCC--eEEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGI--NVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DG--tVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
.+||+++++.. .+..|...+. .|+|+|+.|++++ ..++ .|.+||+.. + ....+..|...+.+
T Consensus 250 ~~~d~~~~~~~---------~l~~~~~~~~~~~~spdg~~l~~~s--~~~g~~~i~~~d~~~--~-~~~~l~~~~~~~~~ 315 (415)
T 2hqs_A 250 YVMDLASGQIR---------QVTDGRSNNTEPTWFPDSQNLAFTS--DQAGRPQVYKVNING--G-APQRITWEGSQNQD 315 (415)
T ss_dssp EEEETTTCCEE---------ECCCCSSCEEEEEECTTSSEEEEEE--CTTSSCEEEEEETTS--S-CCEECCCSSSEEEE
T ss_pred EEEECCCCCEE---------eCcCCCCcccceEECCCCCEEEEEE--CCCCCcEEEEEECCC--C-CEEEEecCCCcccC
Confidence 99999876532 2445555554 4999999888875 2345 677778865 2 23455567788999
Q ss_pred EEEccCCCCCCCCCCEEEEEeCC---CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEE
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKG---GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWY 2448 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~D---GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwd 2448 (2548)
++|+|+ +++|++++.+ +.|++|| +.+++.. .+
T Consensus 316 ~~~spd-------G~~l~~~~~~~g~~~i~~~d---~~~~~~~-~l---------------------------------- 350 (415)
T 2hqs_A 316 ADVSSD-------GKFMVMVSSNGGQQHIAKQD---LATGGVQ-VL---------------------------------- 350 (415)
T ss_dssp EEECTT-------SSEEEEEEECSSCEEEEEEE---TTTCCEE-EC----------------------------------
T ss_pred eEECCC-------CCEEEEEECcCCceEEEEEE---CCCCCEE-Ee----------------------------------
Confidence 999999 7788887764 5899999 4445442 22
Q ss_pred cccCCCCCEEEEEEeCCCCEEEEEeCCC---cEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCC
Q 000054 2449 IPKAHLGSVTRISTVPNTSLFLTGSKDG---DVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSR 2525 (2548)
Q Consensus 2449 i~~gH~~~VtsLafSPdG~~LaSGS~DG---tIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPd 2525 (2548)
..|. .+.+++|+|+|++|++++.|+ .|++||+..+. ...+ .+|.+. |.+++|+|.
T Consensus 351 --~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~-~~~l--------------~~~~~~----v~~~~~~~~ 408 (415)
T 2hqs_A 351 --SSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARL--------------PATDGQ----VKFPAWSPY 408 (415)
T ss_dssp --CCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEEC--------------CCSSSE----EEEEEECCC
T ss_pred --cCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCc-EEEe--------------eCCCCC----CcCCccccc
Confidence 3343 788999999999999998877 79999997544 4434 566654 456699985
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.9e-14 Score=168.34 Aligned_cols=274 Identities=9% Similarity=-0.007 Sum_probs=176.9
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEE-EEeCCCcEEEEEcCCC
Q 000054 2225 FSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALDGTVCTWQLEVG 2303 (2548)
Q Consensus 2225 VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~La-SGS~DGtVrVWDl~tg 2303 (2548)
+++++++.++++++.++.|++||..+++.+..+.... ...+..++|+|+|++++ ++..++.|.+||+.++
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~---------~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~ 75 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD---------KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC 75 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS---------CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC---------CCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC
Confidence 4456888899999999999999999998877764311 12477899999998665 5567899999999887
Q ss_pred cccccccCccceeccCCcccEEEEcCCCCEEEEEeccCC-----------CCeEEEEECCCCC-CCcceeeeccCCCeEE
Q 000054 2304 GRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN-----------GINVVVWDTLAPP-TSSRASITCHEGGARS 2371 (2548)
Q Consensus 2304 k~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~-----------DGtVrIWDl~t~~-~k~v~sl~gHs~~VtS 2371 (2548)
+..............+....-..++|+|+.+++++ .. ++.|.+||+.+.. .+.+..+. +...+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~--~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~ 152 (349)
T 1jmx_B 76 KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATV--NPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYL 152 (349)
T ss_dssp EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEE--EEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCC
T ss_pred cEEEEEEcccccccccccccceEECCCCCEEEEEc--ccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccc
Confidence 54321110000000000012235899999999875 12 4899999987521 11223333 3446889
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCc--------------------cccccccC
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSI--------------------NTCAHADA 2431 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~--------------------~~~~vafS 2431 (2548)
++|+|+ ++ +++++ +.|.+|| ..+++.+..+......... ....+.++
T Consensus 153 ~~~s~d-------g~-l~~~~--~~i~~~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (349)
T 1jmx_B 153 MRAADD-------GS-LYVAG--PDIYKMD---VKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF 219 (349)
T ss_dssp EEECTT-------SC-EEEES--SSEEEEC---TTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC
T ss_pred eeECCC-------Cc-EEEcc--CcEEEEe---CCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeec
Confidence 999998 56 44444 3499999 5567766655221100000 00112233
Q ss_pred CCCCC-------------ccCCCCCceEEEcccCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEEEeccccc
Q 000054 2432 QTGSG-------------SKPGDQNGMLWYIPKAHLGSVTRISTVP-NTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHE 2497 (2548)
Q Consensus 2432 pdGk~-------------v~s~D~sv~Iwdi~~gH~~~VtsLafSP-dG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs 2497 (2548)
+++.. +...++.+++++. ..+...+.+++|+| ++++++++ ++.|.+||+.+++.+..+.
T Consensus 220 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~---- 292 (349)
T 1jmx_B 220 KDDKQDPATADLLYGYLSVDLKTGKTHTQEF-ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN---- 292 (349)
T ss_dssp -------CCCEEEEEEEEEETTTCCEEEEEE-EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE----
T ss_pred CCCcCCccccccceeEEEEeccCCcEEeccc-ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc----
Confidence 32211 1222344555555 33566788999999 99999988 8899999999999887762
Q ss_pred ccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2498 RHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2498 ~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.++ .+.+++|+|+| |++++.++.|++||+.++.
T Consensus 293 ---------~~~------~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~ 327 (349)
T 1jmx_B 293 ---------LDH------TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 327 (349)
T ss_dssp ---------CSS------CCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred ---------CCC------CccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence 111 13467999998 7778889999999998764
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.8e-14 Score=161.66 Aligned_cols=225 Identities=13% Similarity=0.102 Sum_probs=156.8
Q ss_pred EEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC-CcccccccCccc
Q 000054 2236 VGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV-GGRSNVRPMESC 2314 (2548)
Q Consensus 2236 SGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t-gk~i~i~p~~s~ 2314 (2548)
.++.|+.|++||..+++...... |.+.|.+++|+|+|+++++++ ++.|.+||+.+ ++....
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~-----------~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~------ 78 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQ-----------TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV------ 78 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEE-----------ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC------
T ss_pred CCCcceeEEEEeCCCCceeeecc-----------CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe------
Confidence 34678999999999887664432 347899999999999999987 88999999988 643221
Q ss_pred eeccCCc-ccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEE-E
Q 000054 2315 LCFSSHA-MDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIV-T 2390 (2548)
Q Consensus 2315 ~t~~gH~-~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLV-S 2390 (2548)
...+. ..+ ..|+|+|+.+++++.. .++.++||.+..... ....+..+ ..+..++|+|+ ++.++ +
T Consensus 79 --~~~~~~~~~~~~~~spdg~~l~~~~~~-~~~~~~l~~~~~~~~-~~~~~~~~-~~~~~~~~spd-------g~~l~~~ 146 (297)
T 2ojh_A 79 --DTGFATICNNDHGISPDGALYAISDKV-EFGKSAIYLLPSTGG-TPRLMTKN-LPSYWHGWSPD-------GKSFTYC 146 (297)
T ss_dssp --CCTTCCCBCSCCEECTTSSEEEEEECT-TTSSCEEEEEETTCC-CCEECCSS-SSEEEEEECTT-------SSEEEEE
T ss_pred --ccccccccccceEECCCCCEEEEEEeC-CCCcceEEEEECCCC-ceEEeecC-CCccceEECCC-------CCEEEEE
Confidence 22332 233 3599999999988621 334566665543212 23444433 35899999998 56655 8
Q ss_pred EeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEE
Q 000054 2391 GGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFL 2470 (2548)
Q Consensus 2391 GS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~La 2470 (2548)
++.|+.+++|+++ ..+++. ..+ ..|...+.+++|+|+|++|+
T Consensus 147 ~~~~~~~~l~~~~-~~~~~~-~~~------------------------------------~~~~~~~~~~~~s~dg~~l~ 188 (297)
T 2ojh_A 147 GIRDQVFDIYSMD-IDSGVE-TRL------------------------------------THGEGRNDGPDYSPDGRWIY 188 (297)
T ss_dssp EEETTEEEEEEEE-TTTCCE-EEC------------------------------------CCSSSCEEEEEECTTSSEEE
T ss_pred ECCCCceEEEEEE-CCCCcc-eEc------------------------------------ccCCCccccceECCCCCEEE
Confidence 8899999999964 222222 222 45677899999999999888
Q ss_pred EEe-CCCcEEEEECC-CCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECC-----------Cc
Q 000054 2471 TGS-KDGDVKLWDAK-AAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGD-----------GS 2535 (2548)
Q Consensus 2471 SGS-~DGtIrIWDl~-Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~D-----------Gt 2535 (2548)
.++ .|+.+++|++. .+..+..+ ..|. ..+..++|+|+| |++++.| +.
T Consensus 189 ~~~~~~~~~~i~~~~~~~~~~~~~--------------~~~~----~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 250 (297)
T 2ojh_A 189 FNSSRTGQMQIWRVRVDGSSVERI--------------TDSA----YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR 250 (297)
T ss_dssp EEECTTSSCEEEEEETTSSCEEEC--------------CCCS----EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred EEecCCCCccEEEECCCCCCcEEE--------------ecCC----cccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence 766 59999999986 44444444 3343 235677999999 6766655 56
Q ss_pred EEEEECCCCcc
Q 000054 2536 VKLIQLEDYQH 2546 (2548)
Q Consensus 2536 IrIWDL~sg~l 2546 (2548)
|++||+.++..
T Consensus 251 l~~~d~~~~~~ 261 (297)
T 2ojh_A 251 VQLMDMDGGNV 261 (297)
T ss_dssp EEEEETTSCSC
T ss_pred EEEEecCCCCc
Confidence 99999987643
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.8e-14 Score=191.96 Aligned_cols=268 Identities=9% Similarity=-0.026 Sum_probs=176.5
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC---------C
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD---------G 2293 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D---------G 2293 (2548)
.+++|+|+|+++++ +.||+|++||..+++....+.... .+...|.+++|+|||++|++++.+ +
T Consensus 20 ~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~-------~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~ 91 (723)
T 1xfd_A 20 PEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKK-------IESLRAIRYEISPDREYALFSYNVEPIYQHSYTG 91 (723)
T ss_dssp CCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTT-------TTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCS
T ss_pred cccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEecccc-------ccccccceEEECCCCCEEEEEecCccceeeccee
Confidence 56789999997766 789999999999998766653211 011258999999999999999875 7
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe--
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA-- 2369 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V-- 2369 (2548)
.+.+||+.+++...+ ....+|...+. +|+|||+.|+.+. ++.|++||+.. ++.......+...+
T Consensus 92 ~i~~~d~~~~~~~~l------~~~~~~~~~~~~~~~SPdG~~la~~~----~~~i~~~~~~~--g~~~~~~~~~~~~~~~ 159 (723)
T 1xfd_A 92 YYVLSKIPHGDPQSL------DPPEVSNAKLQYAGWGPKGQQLIFIF----ENNIYYCAHVG--KQAIRVVSTGKEGVIY 159 (723)
T ss_dssp EEEEEESSSCCCEEC------CCTTCCSCCCSBCCBCSSTTCEEEEE----TTEEEEESSSS--SCCEEEECCCBTTTEE
T ss_pred eEEEEECCCCceEec------cCCccccccccccEECCCCCEEEEEE----CCeEEEEECCC--CceEEEecCCCCCceE
Confidence 888999998753211 11234433333 4999999999985 58999999976 44444444433333
Q ss_pred ----------------EEEEEccCCCCCCCCCCEEEEEeCC-CcEEEEeCCccccCceeeeecCCCCCCCccccccccCC
Q 000054 2370 ----------------RSISVFDNDLGSGSVSPLIVTGGKG-GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQ 2432 (2548)
Q Consensus 2370 ----------------tSLafsP~dlg~gs~g~lLVSGS~D-GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSp 2432 (2548)
.++.|+|+ ++.|++++.| +.+++|++.... +. .......+.+.+
T Consensus 160 ~g~~~~v~~ee~~~~~~~~~~SpD-------g~~la~~~~~~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~ 220 (723)
T 1xfd_A 160 NGLSDWLYEEEILKTHIAHWWSPD-------GTRLAYAAINDSRVPIMELPTYT-GS-----------IYPTVKPYHYPK 220 (723)
T ss_dssp EEECCHHHHHTTSSSSEEEEECTT-------SSEEEEEEEECTTSCEEEECCCS-SS-----------SSCCCEEEECCB
T ss_pred CcccceeEEEEeccCcceEEECCC-------CCEEEEEEECCCccceEEeeccC-Cc-----------CCCcceeccCCC
Confidence 78999999 7788887754 578888853111 00 111223445555
Q ss_pred CCCCccCCCCCceEEEcccC--------------CCCCEEEEEEeCCCCEEEEEeC----CCcEEEEECCCCcEEEEecc
Q 000054 2433 TGSGSKPGDQNGMLWYIPKA--------------HLGSVTRISTVPNTSLFLTGSK----DGDVKLWDAKAAQLVYHWSK 2494 (2548)
Q Consensus 2433 dGk~v~s~D~sv~Iwdi~~g--------------H~~~VtsLafSPdG~~LaSGS~----DGtIrIWDl~Tgell~tL~~ 2494 (2548)
+|.. ..+..+++|++..+ |...+.+++|+|||+++++.+. ++.|++||+.+++....+.
T Consensus 221 ~G~~--~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~- 297 (723)
T 1xfd_A 221 AGSE--NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE- 297 (723)
T ss_dssp TTSC--CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE-
T ss_pred CCCC--CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEE-
Confidence 5543 22345677775322 2567899999999999977754 3579999999998776552
Q ss_pred cccccccccCcccCCCCceeecEEEEEEcCCe--EEE--EECCC------cEEEEE-CCCC
Q 000054 2495 LHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLS--CGGDG------SVKLIQ-LEDY 2544 (2548)
Q Consensus 2495 ~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaS--GS~DG------tIrIWD-L~sg 2544 (2548)
..+.+.+......++|+||| |+. +..|| .|.+|| ..++
T Consensus 298 ------------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~ 346 (723)
T 1xfd_A 298 ------------DESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNS 346 (723)
T ss_dssp ------------EECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCS
T ss_pred ------------eccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCC
Confidence 11222221001234899999 553 56677 566677 3443
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-13 Score=181.85 Aligned_cols=278 Identities=11% Similarity=0.031 Sum_probs=181.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++|+|+ ..++.+ .++.|++||+.+++...... +.+.+.+++|+|||++|+++ .|+.|.+||+.
T Consensus 84 v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~~l~~-----------~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~ 149 (706)
T 2z3z_A 84 SFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVTYLFD-----------TNEETASLDFSPVGDRVAYV-RNHNLYIARGG 149 (706)
T ss_dssp CEEEEETTT-TEEEEE-ETTEEEEEETTTTEEEEEEC-----------CTTCCTTCEECTTSSEEEEE-ETTEEEEEECB
T ss_pred ceeEEECCC-CeEEEE-ECCEEEEEECCCCceEEccC-----------CcccccCCcCCCCCCEEEEE-ECCeEEEEecC
Confidence 588999999 666655 45999999999887544431 22568889999999999985 68999999998
Q ss_pred C-----CcccccccCccceeccCC------c--ccEEEEcCCCCEEEEEecc----------------------------
Q 000054 2302 V-----GGRSNVRPMESCLCFSSH------A--MDVSYITSSGSVIAAAGHS---------------------------- 2340 (2548)
Q Consensus 2302 t-----gk~i~i~p~~s~~t~~gH------~--~~V~afSpdGslLATgG~S---------------------------- 2340 (2548)
+ ++..............+. . ..-.+|+|||+.|++++..
T Consensus 150 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g 229 (706)
T 2z3z_A 150 KLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAG 229 (706)
T ss_dssp CTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTT
T ss_pred cccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCC
Confidence 7 653322110000000000 0 1223599999999987410
Q ss_pred --CCCCeEEEEECCCCCCCcceee--eccCCCeEEEEEccCCCCCCCCCCEEEEEeCCC-----cEEEEeCCccccCcee
Q 000054 2341 --SNGINVVVWDTLAPPTSSRASI--TCHEGGARSISVFDNDLGSGSVSPLIVTGGKGG-----DVGIHDFRYIATGKTK 2411 (2548)
Q Consensus 2341 --S~DGtVrIWDl~t~~~k~v~sl--~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DG-----tVrLWDLR~l~TGk~l 2411 (2548)
..+..|.+||+.+ ++..... ..|...+.+++|+|+ ++.|++++.|+ .|++|| ..+++..
T Consensus 230 ~~~~~~~l~~~d~~~--~~~~~~~~~~~~~~~~~~~~~spd-------g~~l~~~~~~~~~~~~~v~~~d---~~~g~~~ 297 (706)
T 2z3z_A 230 TPSHHVTVGIYHLAT--GKTVYLQTGEPKEKFLTNLSWSPD-------ENILYVAEVNRAQNECKVNAYD---AETGRFV 297 (706)
T ss_dssp SCCCEEEEEEEETTT--TEEEECCCCSCTTCEEEEEEECTT-------SSEEEEEEECTTSCEEEEEEEE---TTTCCEE
T ss_pred CCCCeeEEEEEECCC--CceEeeccCCCCceeEeeEEEECC-------CCEEEEEEeCCCCCeeEEEEEE---CCCCcee
Confidence 1346799999976 3332222 256778999999999 78888887776 999999 5556333
Q ss_pred eeecCCCCCC-CccccccccCC--CCCC--ccCCCCCceEEEcc---------cCCCCCEEE-EEEeCCCCEEEEEeC-C
Q 000054 2412 KHKHSDRGGS-SINTCAHADAQ--TGSG--SKPGDQNGMLWYIP---------KAHLGSVTR-ISTVPNTSLFLTGSK-D 2475 (2548)
Q Consensus 2412 ~tl~~~~~~s-~~~~~~vafSp--dGk~--v~s~D~sv~Iwdi~---------~gH~~~Vts-LafSPdG~~LaSGS~-D 2475 (2548)
..+....... ......+.|+| ||++ ++..++..++|.+. ..|...+.. ++|+|+|+.|+.++. +
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~ 377 (706)
T 2z3z_A 298 RTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEA 377 (706)
T ss_dssp EEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSS
T ss_pred eEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCC
Confidence 3321111110 11124568999 9987 34456667888642 346667876 799999987766554 4
Q ss_pred C----cEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEE-ECC---CcEEEEECCCCc
Q 000054 2476 G----DVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSC-GGD---GSVKLIQLEDYQ 2545 (2548)
Q Consensus 2476 G----tIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSG-S~D---GtIrIWDL~sg~ 2545 (2548)
+ .|..||+.+++. ..+ . |.. .+.+++|+|+| ++.. +.+ +.|++||+.++.
T Consensus 378 ~~~~~~l~~~d~~~~~~-~~l--------------~-~~~----~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 378 SPLERHFYCIDIKGGKT-KDL--------------T-PES----GMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp CTTCBEEEEEETTCCCC-EES--------------C-CSS----SEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred CCceEEEEEEEcCCCCc-eec--------------c-CCC----ceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 4 677778777663 222 1 222 25677999999 5543 443 569999998764
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-13 Score=184.11 Aligned_cols=277 Identities=10% Similarity=0.040 Sum_probs=181.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCc--eeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK--ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~--~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
+.+++|+|||++|++++. +.|++||+.++. ....+ ..|...+..++|+|||++|++++ ++.|.+||
T Consensus 111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l----------~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d 178 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL----------THGEGFATDAKLSPKGGFVSFIR-GRNLWVID 178 (741)
T ss_dssp SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBC----------CCSSSCEEEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEc----------ccCCcccccccCCCCCCEEEEEe-CCcEEEEe
Confidence 467899999999999887 999999998872 22222 12347799999999999999987 56999999
Q ss_pred cCCCcccccccCccceeccCCc----------ccEEEEcCCCCEEEEEeccCCCC-------------------------
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHA----------MDVSYITSSGSVIAAAGHSSNGI------------------------- 2344 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~----------~~V~afSpdGslLATgG~SS~DG------------------------- 2344 (2548)
+.+++...+..........++. ..-.+|+|||+.|+++. .|+
T Consensus 179 ~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~---~d~~~~~~~~~~~~~p~~~~~~~~~~~~ 255 (741)
T 2ecf_A 179 LASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYAR---IDESPVPVQKRYEVYADRTDVIEQRYPA 255 (741)
T ss_dssp TTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEE---EECTTSCEEEEEEECSSCEEEEEEECCB
T ss_pred cCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEE---EcCCCCceEecCCCCCCcccceEeecCC
Confidence 9887543221110000001110 11246999999998875 333
Q ss_pred --------eEEEEECCC-CCCCcceeee--ccCCCeEEEEEccCCCCCCCCCCEEEEEeC-----CCcEEEEeCCccccC
Q 000054 2345 --------NVVVWDTLA-PPTSSRASIT--CHEGGARSISVFDNDLGSGSVSPLIVTGGK-----GGDVGIHDFRYIATG 2408 (2548)
Q Consensus 2345 --------tVrIWDl~t-~~~k~v~sl~--gHs~~VtSLafsP~dlg~gs~g~lLVSGS~-----DGtVrLWDLR~l~TG 2408 (2548)
.|.+||+.+ . +...... .|...+.+++| |+ ++.|++++. ++.|++|| ..++
T Consensus 256 ~g~~~~~~~l~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~-pD-------g~~l~~~~~~~~~~~~~i~~~d---~~~g 322 (741)
T 2ecf_A 256 AGDANVQVKLGVISPAEQA--QTQWIDLGKEQDIYLARVNW-RD-------PQHLSFQRQSRDQKKLDLVEVT---LASN 322 (741)
T ss_dssp TTSCCCEEEEEEECSSTTC--CCEEECCCSCSSEEEEEEEE-EE-------TTEEEEEEEETTSSEEEEEEEE---TTTC
T ss_pred CCCCCCeeEEEEEECCCCC--ceEEecCCCCcceEEEEEEe-CC-------CCEEEEEEecccCCeEEEEEEE---CCCC
Confidence 788888864 3 2222221 47788999999 98 777776653 57899999 5566
Q ss_pred ceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc--------ccCCCCCEEEE-EEeCCCCEEE-EEeCCC
Q 000054 2409 KTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI--------PKAHLGSVTRI-STVPNTSLFL-TGSKDG 2476 (2548)
Q Consensus 2409 k~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi--------~~gH~~~VtsL-afSPdG~~La-SGS~DG 2476 (2548)
+....+.............+.|+|||++ ++..++..++|.+ +..|...|..+ .|+|+|+.++ +++.|+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~ 402 (741)
T 2ecf_A 323 QQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIES 402 (741)
T ss_dssp CEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSC
T ss_pred ceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCC
Confidence 6655542211111112346789999987 3445566677754 23567778887 5999998775 455565
Q ss_pred --cEEEEECCC-CcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EE-EEECC---CcEEEEECCCCc
Q 000054 2477 --DVKLWDAKA-AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FL-SCGGD---GSVKLIQLEDYQ 2545 (2548)
Q Consensus 2477 --tIrIWDl~T-gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--La-SGS~D---GtIrIWDL~sg~ 2545 (2548)
.++||++.. ++....+ .+ . ..+..++|+|+| ++ +++.+ +.+.+|+..++.
T Consensus 403 ~~~~~l~~~~~~g~~~~~l--------------~~-~----~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~ 461 (741)
T 2ecf_A 403 ARESQIYAVPLQGGQPQRL--------------SK-A----PGMHSASFARNASVYVDSWSNNSTPPQIELFRANGEK 461 (741)
T ss_dssp TTCBEEEEEETTCCCCEEC--------------CC-S----CSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSCE
T ss_pred CceEEEEEEEcCCCCeeec--------------cc-C----CCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCCe
Confidence 899999864 5444444 22 1 234577999999 44 33333 468889876653
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.54 E-value=7e-14 Score=177.97 Aligned_cols=212 Identities=11% Similarity=0.061 Sum_probs=147.8
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccc--------ccccCccceeccCCcccEE--EEcCCCCEEEE---Ee
Q 000054 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRS--------NVRPMESCLCFSSHAMDVS--YITSSGSVIAA---AG 2338 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i--------~i~p~~s~~t~~gH~~~V~--afSpdGslLAT---gG 2338 (2548)
..+..+++++++.++++++.|| +++|+....... ......... ...+...|. +|+++|+++++ +|
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGL-LVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCE-EECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccc-cccCCCcccEEEEcCCCCEEEEEEecc
Confidence 4588999999999999999998 889886421100 000000011 112344565 48999999994 23
Q ss_pred ccCCCCeEEEEECCCC-----CC-Cc---ceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCc
Q 000054 2339 HSSNGINVVVWDTLAP-----PT-SS---RASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGK 2409 (2548)
Q Consensus 2339 ~SS~DGtVrIWDl~t~-----~~-k~---v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk 2409 (2548)
+.|+.|++||+... .. ++ +..+.+|.+.|++++|+|++ +.+|++|+.||+|++||++ ++.
T Consensus 115 --s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~------~~~las~s~Dg~v~iwD~~---~~~ 183 (434)
T 2oit_A 115 --EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTV------PSMVAVCLADGSIAVLQVT---ETV 183 (434)
T ss_dssp --TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSC------TTEEEEEETTSCEEEEEES---SSE
T ss_pred --CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCC------CCEEEEEECCCeEEEEEcC---CCc
Confidence 48999999998642 00 12 35566799999999999985 6799999999999999954 343
Q ss_pred eeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000054 2410 TKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLV 2489 (2548)
Q Consensus 2410 ~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell 2489 (2548)
..... .+|...|++++|+|+|++|++|+.||+|++||++ ++..
T Consensus 184 ~~~~~------------------------------------~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~ 226 (434)
T 2oit_A 184 KVCAT------------------------------------LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEK 226 (434)
T ss_dssp EEEEE------------------------------------ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEE
T ss_pred ceeec------------------------------------cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccc
Confidence 33222 4588899999999999999999999999999998 6666
Q ss_pred EEecccccccccccCcccCCCCceeecEEEEEEcCCe-E--EEEECCCc------EEEEECCCC
Q 000054 2490 YHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-F--LSCGGDGS------VKLIQLEDY 2544 (2548)
Q Consensus 2490 ~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-L--aSGS~DGt------IrIWDL~sg 2544 (2548)
.++.. |... ..+|. ..|.+++|++++ + ++++.||. +++|++...
T Consensus 227 ~~~~~-~~~~------~~~~~----~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 227 KVIPC-PPFY------ESDHP----VRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEECC-CTTC------CTTSC----EEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ccccC-Cccc------CCCCc----eeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 65521 1000 01122 246788999988 3 24555543 899999754
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-13 Score=180.83 Aligned_cols=233 Identities=9% Similarity=0.028 Sum_probs=162.1
Q ss_pred EEEEEEEcCCCCEEEEEEC-CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC---CCcEE
Q 000054 2221 STRAFSSHPLRPFFLVGSS-NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL---DGTVC 2296 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LASGS~-DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~---DGtVr 2296 (2548)
.+.+++|+|||++||+++. ||+++||++++++.. .+.. .+...|..++|+|| +.+++++. +....
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~---------~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~ 91 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNR---------EPINSVLDPHYGVG-RVILVRDVSKGAEQHA 91 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCS---------SCCSEECEECTTCS-EEEEEEECSTTSCCEE
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeec---------ccccccccccCCCC-eEEEEeccCCCCcceE
Confidence 3789999999999998876 999999998666543 2211 12257899999999 77777775 56677
Q ss_pred EEEcCC--CcccccccCccceeccCCcccEEEEcCCCCEE-EEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000054 2297 TWQLEV--GGRSNVRPMESCLCFSSHAMDVSYITSSGSVI-AAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2297 VWDl~t--gk~i~i~p~~s~~t~~gH~~~V~afSpdGslL-ATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
+|.+.. ..... .....+...+.+++|+|+.+ ++.+ .++.+.+||+.+ ++... +..+.. .+++
T Consensus 92 l~~~~~~~~g~~~-------~l~~~~~~~~~~~s~dg~~~~~~s~---~~~~~~l~d~~~--g~~~~-l~~~~~--~~~~ 156 (582)
T 3o4h_A 92 LFKVNTSRPGEEQ-------RLEAVKPMRILSGVDTGEAVVFTGA---TEDRVALYALDG--GGLRE-LARLPG--FGFV 156 (582)
T ss_dssp EEEEETTSTTCCE-------ECTTSCSBEEEEEEECSSCEEEEEE---CSSCEEEEEEET--TEEEE-EEEESS--CEEE
T ss_pred EEEEeccCCCccc-------cccCCCCceeeeeCCCCCeEEEEec---CCCCceEEEccC--CcEEE-eecCCC--ceEE
Confidence 777654 22111 00112222355788888643 3332 344555999975 33333 333333 8899
Q ss_pred EccCCCCCCCCCCEEEEEeCC----CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEc
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKG----GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYI 2449 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~D----GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi 2449 (2548)
|+|+ |+.|++++.| +.|++|| +.+++.. .+
T Consensus 157 ~spD-------G~~la~~~~~~~~~~~i~~~d---~~~g~~~-~l----------------------------------- 190 (582)
T 3o4h_A 157 SDIR-------GDLIAGLGFFGGGRVSLFTSN---LSSGGLR-VF----------------------------------- 190 (582)
T ss_dssp EEEE-------TTEEEEEEEEETTEEEEEEEE---TTTCCCE-EE-----------------------------------
T ss_pred ECCC-------CCEEEEEEEcCCCCeEEEEEc---CCCCCce-Ee-----------------------------------
Confidence 9999 8899988877 7899999 4445433 32
Q ss_pred ccCCCCCEEEEEEeCCCCEEEEEeCCC--cEEEEECCCCcEEEEecccccccccccCcccCCCCceeec----EEEEEEc
Q 000054 2450 PKAHLGSVTRISTVPNTSLFLTGSKDG--DVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAG----VTDIQVV 2523 (2548)
Q Consensus 2450 ~~gH~~~VtsLafSPdG~~LaSGS~DG--tIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~----VtsLafS 2523 (2548)
..|.+.+..++|+|||+.|+++..|| .|++||+.+++.. .+ .+|...+... .....|+
T Consensus 191 -~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~--------------~~~~~~~~~~~~~~~~~~~~s 254 (582)
T 3o4h_A 191 -DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DL--------------ELPSKDFSSYRPTAITWLGYL 254 (582)
T ss_dssp -CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-EC--------------CCSCSHHHHHCCSEEEEEEEC
T ss_pred -ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-Ec--------------cCCCcChhhhhhccccceeEc
Confidence 55778889999999999999888899 8999999998877 33 3444433222 1223499
Q ss_pred CCe--EEEEECCCcEEEEEC
Q 000054 2524 SRG--FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2524 PdG--LaSGS~DGtIrIWDL 2541 (2548)
||| +++++.||++++|++
T Consensus 255 pdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 255 PDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp TTSCEEEEEEETTEEEEEET
T ss_pred CCCcEEEEEEcCCcEEEEEE
Confidence 999 778999999999998
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.3e-13 Score=159.71 Aligned_cols=253 Identities=10% Similarity=0.125 Sum_probs=155.8
Q ss_pred EEEEEcCCCCEEEEEEC--CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe-CCCcEEEEE
Q 000054 2223 RAFSSHPLRPFFLVGSS--NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LDGTVCTWQ 2299 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~--DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS-~DGtVrVWD 2299 (2548)
..++|+|+|++++++.. ++.|++||+.+++... +.... .+...+..++|+|+|++|++++ .++.|.+|+
T Consensus 43 ~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~-~~~~~-------~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~ 114 (347)
T 3hfq_A 43 TYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHK-LNTVV-------APGTPPAYVAVDEARQLVYSANYHKGTAEVMK 114 (347)
T ss_dssp CCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEE-EEEEE-------EESCCCSEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ceEEEccCCeEEEEEecCCCceEEEEEecCCcEEE-eeeee-------cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEE
Confidence 56888999994444432 6899999997765322 11111 1236788999999999998888 779999999
Q ss_pred cCCCcccccccCccceeccC-------CcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCc--ceeeecc-CC
Q 000054 2300 LEVGGRSNVRPMESCLCFSS-------HAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--RASITCH-EG 2367 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~g-------H~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~--v~sl~gH-s~ 2367 (2548)
+......... .. ....+ +...+ .+++|+|+++++ + ..++.|.+||+.. .++. +..+..+ ..
T Consensus 115 ~~~~g~~~~~--~~-~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~-~--~~~~~v~~~~~~~-~g~~~~~~~~~~~~g~ 187 (347)
T 3hfq_A 115 IAADGALTLT--DT-VQHSGHGPRPEQDGSHIHYTDLTPDNRLAVI-D--LGSDKVYVYNVSD-AGQLSEQSVLTMEAGF 187 (347)
T ss_dssp ECTTSCEEEE--EE-EECCCCCSSTTCSSCCEEEEEECTTSCEEEE-E--TTTTEEEEEEECT-TSCEEEEEEEECCTTC
T ss_pred eCCCCCeeec--ce-eecCCCCCCccccCCCceEEEECCCCcEEEE-e--CCCCEEEEEEECC-CCcEEEeeeEEcCCCC
Confidence 9643221110 00 00111 11123 358999995444 3 3688999999973 1322 2222333 34
Q ss_pred CeEEEEEccCCCCCCCCCC-EEEEEeCCCcEEEEeCCccccCceee--eecCCCCCCCccccccccCCCCCCccCCCCCc
Q 000054 2368 GARSISVFDNDLGSGSVSP-LIVTGGKGGDVGIHDFRYIATGKTKK--HKHSDRGGSSINTCAHADAQTGSGSKPGDQNG 2444 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~-lLVSGS~DGtVrLWDLR~l~TGk~l~--tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv 2444 (2548)
.+..++|+|+ ++ +++++..++.|.+||+. ..+++... .... .+.+
T Consensus 188 ~p~~~~~spd-------g~~l~v~~~~~~~v~v~~~~-~~~g~~~~~~~~~~--------------~~~~---------- 235 (347)
T 3hfq_A 188 GPRHLVFSPD-------GQYAFLAGELSSQIASLKYD-TQTGAFTQLGIVKT--------------IPAD---------- 235 (347)
T ss_dssp CEEEEEECTT-------SSEEEEEETTTTEEEEEEEE-TTTTEEEEEEEEES--------------SCTT----------
T ss_pred CCceEEECCC-------CCEEEEEeCCCCEEEEEEec-CCCCceEEeeeeee--------------cCCC----------
Confidence 7889999998 66 45556778999999954 12333211 1100 0000
Q ss_pred eEEEcccCCCCCEEEEEEeCCCCEE-EEEeCCCcEEEEECCC-C--cEEEEecccccccccccCcccCCCCceeecEEEE
Q 000054 2445 MLWYIPKAHLGSVTRISTVPNTSLF-LTGSKDGDVKLWDAKA-A--QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDI 2520 (2548)
Q Consensus 2445 ~Iwdi~~gH~~~VtsLafSPdG~~L-aSGS~DGtIrIWDl~T-g--ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsL 2520 (2548)
......+..++|+|+|++| ++...++.|.+||+.. + +.+..+ ..++. .+.++
T Consensus 236 ------~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~--------------~~~~~----~~~~~ 291 (347)
T 3hfq_A 236 ------YTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQI--------------STEGD----FPRDF 291 (347)
T ss_dssp ------CCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEE--------------ECSSS----CCCEE
T ss_pred ------CCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEE--------------ecCCC----CcCeE
Confidence 0112468899999999977 5556789999999973 3 333333 22322 23567
Q ss_pred EEcCCe--EEEEE-CCCcEEEEEC--CCCcc
Q 000054 2521 QVVSRG--FLSCG-GDGSVKLIQL--EDYQH 2546 (2548)
Q Consensus 2521 afSPdG--LaSGS-~DGtIrIWDL--~sg~l 2546 (2548)
+|+|+| |++++ .++.|.+|++ +++.+
T Consensus 292 ~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 292 DLDPTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 999999 66655 4589999955 45543
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-13 Score=176.41 Aligned_cols=216 Identities=10% Similarity=0.003 Sum_probs=151.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCce--------eEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEE----EE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKA--------TATYGVLPAANVPPPYALASISALQFDHYGHRFA----SA 2289 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~--------l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~La----SG 2289 (2548)
+..+++++++.++++|+.|+ +++|+...... ......... ....+.+.|++++|+|+|++|+ +|
T Consensus 39 ~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQG---LLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCC---EEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred ccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcc---ccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 46677789999999999988 99988642110 000000000 0112346799999999999999 78
Q ss_pred eCCCcEEEEEcCCCccc---ccccCccceeccCCcccEEE--EcCC-CCEEEEEeccCCCCeEEEEECCCCCCCcceeee
Q 000054 2290 ALDGTVCTWQLEVGGRS---NVRPMESCLCFSSHAMDVSY--ITSS-GSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT 2363 (2548)
Q Consensus 2290 S~DGtVrVWDl~tgk~i---~i~p~~s~~t~~gH~~~V~a--fSpd-GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~ 2363 (2548)
+.|++|++||++++... ...+......+.+|...|.+ |+|+ ++++++++ .||+|++||++. ...+....
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s---~Dg~v~iwD~~~--~~~~~~~~ 189 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL---ADGSIAVLQVTE--TVKVCATL 189 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE---TTSCEEEEEESS--SEEEEEEE
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE---CCCeEEEEEcCC--Ccceeecc
Confidence 89999999999754100 00112223446778888874 8887 78999986 899999999986 34555566
Q ss_pred ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCC
Q 000054 2364 CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQN 2443 (2548)
Q Consensus 2364 gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~s 2443 (2548)
+|...|++++|+|+ +++|++|+.||+|++||++ ++....+.....
T Consensus 190 ~~~~~v~~v~wspd-------g~~lasgs~dg~v~iwd~~----~~~~~~~~~~~~------------------------ 234 (434)
T 2oit_A 190 PSTVAVTSVCWSPK-------GKQLAVGKQNGTVVQYLPT----LQEKKVIPCPPF------------------------ 234 (434)
T ss_dssp CGGGCEEEEEECTT-------SSCEEEEETTSCEEEECTT----CCEEEEECCCTT------------------------
T ss_pred CCCCceeEEEEcCC-------CCEEEEEcCCCcEEEEccC----CcccccccCCcc------------------------
Confidence 78999999999998 7899999999999999965 233333210000
Q ss_pred ceEEEcccCCCCCEEEEEEeCCCCEEEEE-eCCCc------EEEEECCCC
Q 000054 2444 GMLWYIPKAHLGSVTRISTVPNTSLFLTG-SKDGD------VKLWDAKAA 2486 (2548)
Q Consensus 2444 v~Iwdi~~gH~~~VtsLafSPdG~~LaSG-S~DGt------IrIWDl~Tg 2486 (2548)
....|...|.+++|++++.++++. +.||. +++||+++.
T Consensus 235 -----~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 235 -----YESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp -----CCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred -----cCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 002355689999999998887654 34543 899999864
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-11 Score=148.33 Aligned_cols=225 Identities=10% Similarity=-0.001 Sum_probs=156.2
Q ss_pred EEEEEcCCCCEEE-EEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe--CCCcEEEEE
Q 000054 2223 RAFSSHPLRPFFL-VGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA--LDGTVCTWQ 2299 (2548)
Q Consensus 2223 ~~VsfSPdG~~LA-SGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS--~DGtVrVWD 2299 (2548)
..++++|+|++++ ++..++.|.+||..+++.+..+....+.. +.......+.+++|+|+|+++++++ .++.|.+||
T Consensus 92 ~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d 170 (353)
T 3vgz_A 92 FGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKR-TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVD 170 (353)
T ss_dssp CSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCC-CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEE
T ss_pred ceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCcc-ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEc
Confidence 4567889999655 45667999999999999887775422110 0011112378999999999888776 478999999
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeec----cCCCeEEEEEc
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC----HEGGARSISVF 2375 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g----Hs~~VtSLafs 2375 (2548)
.++++.....+ ..+....-..++|+|+.+++++ .++.|.+||+.+ .+.+..+.. +...+.+++|+
T Consensus 171 ~~~~~~~~~~~------~~~~~~~~~~~s~dg~~l~~~~---~~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~s 239 (353)
T 3vgz_A 171 GGNIKLKTAIQ------NTGKMSTGLALDSEGKRLYTTN---ADGELITIDTAD--NKILSRKKLLDDGKEHFFINISLD 239 (353)
T ss_dssp TTTTEEEEEEC------CCCTTCCCCEEETTTTEEEEEC---TTSEEEEEETTT--TEEEEEEECCCSSSCCCEEEEEEE
T ss_pred CCCCceEEEec------CCCCccceEEECCCCCEEEEEc---CCCeEEEEECCC--CeEEEEEEcCCCCCCcccceEEEC
Confidence 98875432211 0111112235899999998885 789999999976 455555443 56678899999
Q ss_pred cCCCCCCCCCCEEEEE-eCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000054 2376 DNDLGSGSVSPLIVTG-GKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSG-S~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
|+ ++.++++ ..++.|.+|| ..+++.+..+. ...
T Consensus 240 ~d-------g~~l~~~~~~~~~v~~~d---~~~~~~~~~~~------------------------------------~~~ 273 (353)
T 3vgz_A 240 TA-------RQRAFITDSKAAEVLVVD---TRNGNILAKVA------------------------------------APE 273 (353)
T ss_dssp TT-------TTEEEEEESSSSEEEEEE---TTTCCEEEEEE------------------------------------CSS
T ss_pred CC-------CCEEEEEeCCCCEEEEEE---CCCCcEEEEEE------------------------------------cCC
Confidence 98 5555544 4569999999 55666655541 111
Q ss_pred CCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe
Q 000054 2455 GSVTRISTVPNTSLFLTGS-KDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG 2526 (2548)
Q Consensus 2455 ~~VtsLafSPdG~~LaSGS-~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG 2526 (2548)
...++|+|+|++++.++ .++.|.+||..+++.+..++ .+ ..+.+++|+|+|
T Consensus 274 --~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~--------------~~-----~~~~~~~~s~dg 325 (353)
T 3vgz_A 274 --SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD--------------TP-----THPNSLALSADG 325 (353)
T ss_dssp --CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE--------------CC-----SEEEEEEECTTS
T ss_pred --CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe--------------cC-----CCCCeEEEcCCC
Confidence 14689999999665555 69999999999999887762 11 124677999999
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.48 E-value=2.8e-11 Score=147.86 Aligned_cols=249 Identities=12% Similarity=0.122 Sum_probs=158.6
Q ss_pred EEEEEcCCCCEEEEEECC----CeEEEEEcCC--CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe-CCCcE
Q 000054 2223 RAFSSHPLRPFFLVGSSN----THIYLWEFGK--DKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LDGTV 2295 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~D----GsVrLWDl~t--g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS-~DGtV 2295 (2548)
..++|+|+|++|++++.+ +.|.+|+++. ++. ..+..... +......+++ +++++++++ .++.|
T Consensus 53 ~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~-~~~~~~~~-------~~~~p~~~~~--dg~~l~~~~~~~~~v 122 (361)
T 3scy_A 53 SYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL-HLLNTQKT-------MGADPCYLTT--NGKNIVTANYSGGSI 122 (361)
T ss_dssp CSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE-EEEEEEEC-------SSSCEEEEEE--CSSEEEEEETTTTEE
T ss_pred ceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE-EEeeEecc-------CCCCcEEEEE--CCCEEEEEECCCCEE
Confidence 567899999999998876 8999999875 432 22222111 2256777888 888777776 57899
Q ss_pred EEEEcCCCcccccccCccceeccCC--------cccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCC----C-c--
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSH--------AMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPT----S-S-- 2358 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH--------~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~----k-~-- 2358 (2548)
.+|++......... .......+. ...+ .+++|+|+.+++++ ..++.|.+|++..... + .
T Consensus 123 ~~~~~~~~g~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~--~~~~~v~v~~~~~~~~~~~~~~l~~ 198 (361)
T 3scy_A 123 TVFPIGQDGALLPA--SDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADD--LGTDQIHKFNINPNANADNKEKFLT 198 (361)
T ss_dssp EEEEBCTTSCBCSC--SEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEE--TTTTEEEEEEECTTCCTTTCCCCEE
T ss_pred EEEEeCCCCcCccc--ceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEe--CCCCEEEEEEEcCCCCcccccceee
Confidence 99999755432111 000111111 1112 35899999777765 3688999999875332 2 1
Q ss_pred ----ceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe-CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCC
Q 000054 2359 ----RASITCHEGGARSISVFDNDLGSGSVSPLIVTGG-KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQT 2433 (2548)
Q Consensus 2359 ----v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS-~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpd 2433 (2548)
......+...+..++|+|+ ++++++++ .++.|.+||+ .+++.....
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~spd-------g~~l~v~~~~~~~v~v~~~---~~g~~~~~~------------------- 249 (361)
T 3scy_A 199 KGTPEAFKVAPGSGPRHLIFNSD-------GKFAYLINEIGGTVIAFRY---ADGMLDEIQ------------------- 249 (361)
T ss_dssp EEEEEEEECCTTCCEEEEEECTT-------SSEEEEEETTTCEEEEEEE---ETTEEEEEE-------------------
T ss_pred cccccceecCCCCCCeEEEEcCC-------CCEEEEEcCCCCeEEEEEe---cCCceEEeE-------------------
Confidence 1112234567889999999 67666666 7999999994 344321111
Q ss_pred CCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCC--CcEEEEECC--CCcE--EEEecccccccccccCccc
Q 000054 2434 GSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKD--GDVKLWDAK--AAQL--VYHWSKLHERHTFLQPSSR 2507 (2548)
Q Consensus 2434 Gk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~D--GtIrIWDl~--Tgel--l~tL~~~Hs~hsfl~~tl~ 2507 (2548)
-......+......++|+|+|++|+++..+ +.|.+|++. +++. +..+ .
T Consensus 250 ------------~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~--------------~ 303 (361)
T 3scy_A 250 ------------TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ--------------L 303 (361)
T ss_dssp ------------EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE--------------E
T ss_pred ------------EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe--------------c
Confidence 000112344566899999999998776654 899999995 4553 3333 1
Q ss_pred CCCCceeecEEEEEEcCCe--EEEEE-CCCcEEEEECC--CCc
Q 000054 2508 GFGGVVRAGVTDIQVVSRG--FLSCG-GDGSVKLIQLE--DYQ 2545 (2548)
Q Consensus 2508 GH~~~V~a~VtsLafSPdG--LaSGS-~DGtIrIWDL~--sg~ 2545 (2548)
. + ..+.+++|+|+| |++++ .++.|.+|+++ ++.
T Consensus 304 ~-g----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~ 341 (361)
T 3scy_A 304 T-G----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGL 341 (361)
T ss_dssp C-S----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCC
T ss_pred C-C----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCc
Confidence 1 1 124567999999 66555 77999997654 554
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-12 Score=152.13 Aligned_cols=242 Identities=10% Similarity=0.110 Sum_probs=157.4
Q ss_pred EEEEEEcCCCCEEEEEECC-CeEEEEEcC--CCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC-CCcEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSN-THIYLWEFG--KDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~D-GsVrLWDl~--tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-DGtVrV 2297 (2548)
+.+++|+|+|+++++++.+ +.|++|+++ +++... +..... + +.+..++|+|+|+++++++. ++.|.+
T Consensus 40 ~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~-------~-~~~~~~~~s~dg~~l~~~~~~~~~i~~ 110 (343)
T 1ri6_A 40 VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF-AAESAL-------P-GSLTHISTDHQGQFVFVGSYNAGNVSV 110 (343)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE-EEEEEC-------S-SCCSEEEECTTSSEEEEEETTTTEEEE
T ss_pred CceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee-cccccc-------C-CCCcEEEEcCCCCEEEEEecCCCeEEE
Confidence 3668899999999988876 999999998 554322 111111 1 36889999999998877665 889999
Q ss_pred EEcCCCcccccccCccceeccCCcc-cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcc--e--eeec-cCCCeEE
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAM-DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR--A--SITC-HEGGARS 2371 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~-~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v--~--sl~g-Hs~~VtS 2371 (2548)
||+..+.... .......+.. ...+++|+|+.+++++ ..++.|.+||+... ++.. . .+.. ....+.+
T Consensus 111 ~d~~~~~~~~-----~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~ 182 (343)
T 1ri6_A 111 TRLEDGLPVG-----VVDVVEGLDGCHSANISPDNRTLWVPA--LKQDRICLFTVSDD-GHLVAQDPAEVTTVEGAGPRH 182 (343)
T ss_dssp EEEETTEEEE-----EEEEECCCTTBCCCEECTTSSEEEEEE--GGGTEEEEEEECTT-SCEEEEEEEEEECSTTCCEEE
T ss_pred EECCCCcccc-----ccccccCCCCceEEEECCCCCEEEEec--CCCCEEEEEEecCC-CceeeecccccccCCCCCcce
Confidence 9995332111 1111222222 1235899999888775 26899999999751 2221 1 2233 3457889
Q ss_pred EEEccCCCCCCCCCCEE-EEEeCCCcEEEEeCCccccCce--eeeecCCC-C-CCCccccccccCCCCCC---ccCCCCC
Q 000054 2372 ISVFDNDLGSGSVSPLI-VTGGKGGDVGIHDFRYIATGKT--KKHKHSDR-G-GSSINTCAHADAQTGSG---SKPGDQN 2443 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lL-VSGS~DGtVrLWDLR~l~TGk~--l~tl~~~~-~-~s~~~~~~vafSpdGk~---v~s~D~s 2443 (2548)
++|+|+ ++.+ +++..++.|.+||+.. .+++. ........ . ........+.++|+|+. ....++.
T Consensus 183 ~~~~pd-------g~~l~~~~~~~~~i~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~ 254 (343)
T 1ri6_A 183 MVFHPN-------EQYAYCVNELNSSVDVWELKD-PHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL 254 (343)
T ss_dssp EEECTT-------SSEEEEEETTTTEEEEEESSC-TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE
T ss_pred EEECCC-------CCEEEEEeCCCCEEEEEEecC-CCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCE
Confidence 999998 5655 5555899999999641 23332 22221111 1 11222335889999986 2345778
Q ss_pred ceEEEccc--C---------CCCCEEEEEEeCCCCEEEEEe-CCCcEEEE--ECCCCcE
Q 000054 2444 GMLWYIPK--A---------HLGSVTRISTVPNTSLFLTGS-KDGDVKLW--DAKAAQL 2488 (2548)
Q Consensus 2444 v~Iwdi~~--g---------H~~~VtsLafSPdG~~LaSGS-~DGtIrIW--Dl~Tgel 2488 (2548)
+.+|++.. + ....+.+++|+|+|++|++++ .|+.|.+| |..+++.
T Consensus 255 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 255 ITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp EEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred EEEEEEcCCCCceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence 89998651 1 123478899999999888887 58999999 5456644
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.45 E-value=9.5e-13 Score=175.53 Aligned_cols=249 Identities=10% Similarity=0.032 Sum_probs=159.1
Q ss_pred EEEEEEcCCCCEEEEEECC---------CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000054 2222 TRAFSSHPLRPFFLVGSSN---------THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~D---------GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
+.+++|+|||++|++++.+ +.+++||+.+++. ..+... ..|...+..++|+|||++|++++.
T Consensus 63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-------~~~~~~~~~~~~SPdG~~la~~~~- 133 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPP-------EVSNAKLQYAGWGPKGQQLIFIFE- 133 (723)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCT-------TCCSCCCSBCCBCSSTTCEEEEET-
T ss_pred cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCC-------ccccccccccEECCCCCEEEEEEC-
Confidence 4788999999999998764 7888999998875 333221 224456889999999999999886
Q ss_pred CcEEEEEcCCCcccccccCcc-ceeccCCcc-----------cEEEEcCCCCEEEEEeccC-------------------
Q 000054 2293 GTVCTWQLEVGGRSNVRPMES-CLCFSSHAM-----------DVSYITSSGSVIAAAGHSS------------------- 2341 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s-~~t~~gH~~-----------~V~afSpdGslLATgG~SS------------------- 2341 (2548)
+.|.+||+.+++...+..... ...+.++.. .-.+|+|||+.|+++....
T Consensus 134 ~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (723)
T 1xfd_A 134 NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTV 213 (723)
T ss_dssp TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCC
T ss_pred CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcc
Confidence 899999998875432211000 000011111 1245999999999875210
Q ss_pred ------------CCCeEEEEECCCCCCCcceeeecc------CCCeEEEEEccCCCCCCCCCCEEEEEeC----CCcEEE
Q 000054 2342 ------------NGINVVVWDTLAPPTSSRASITCH------EGGARSISVFDNDLGSGSVSPLIVTGGK----GGDVGI 2399 (2548)
Q Consensus 2342 ------------~DGtVrIWDl~t~~~k~v~sl~gH------s~~VtSLafsP~dlg~gs~g~lLVSGS~----DGtVrL 2399 (2548)
.+..|++||+.+ ++....+..+ ...+.+++|+|+ ++++++... ++.|++
T Consensus 214 ~~~~~~~~G~~~~~~~l~~~d~~~--~~~~~~l~~~~~~~~~~~~~~~~~~SpD-------g~~l~~~~~~~~~~~~i~~ 284 (723)
T 1xfd_A 214 KPYHYPKAGSENPSISLHVIGLNG--PTHDLEMMPPDDPRMREYYITMVKWATS-------TKVAVTWLNRAQNVSILTL 284 (723)
T ss_dssp EEEECCBTTSCCCEEEEEEEESSS--SCCCEECCCCCCGGGSSEEEEEEEESSS-------SEEEEEEEETTSCEEEEEE
T ss_pred eeccCCCCCCCCCeeEEEEEECCC--CceeEEeeCCccCCCccceeEEEEEeCC-------CeEEEEEEcCCCCeEEEEE
Confidence 012799999976 3333444443 668999999998 677766643 357999
Q ss_pred EeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCE----EEEEEeCCCCEEEE--Ee
Q 000054 2400 HDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSV----TRISTVPNTSLFLT--GS 2473 (2548)
Q Consensus 2400 WDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~V----tsLafSPdG~~LaS--GS 2473 (2548)
|| ..++++..... ..|.+.+ ..++|+|+|+.|+. +.
T Consensus 285 ~d---~~~g~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 326 (723)
T 1xfd_A 285 CD---ATTGVCTKKHE-----------------------------------DESEAWLHRQNEEPVFSKDGRKFFFIRAI 326 (723)
T ss_dssp EE---TTTCCEEEEEE-----------------------------------EECSSCCCCCCCCCEECTTSCSEEEEEEE
T ss_pred Ee---CCCCcceEEEE-----------------------------------eccCCEEeccCCCceEcCCCCeEEEEEec
Confidence 99 55666544430 1122332 36789999997664 45
Q ss_pred CCC------cEEEEE-CCCCcE--EEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECC---CcEEEE
Q 000054 2474 KDG------DVKLWD-AKAAQL--VYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGD---GSVKLI 2539 (2548)
Q Consensus 2474 ~DG------tIrIWD-l~Tgel--l~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~D---GtIrIW 2539 (2548)
.|| .|.+|| ..+++. ...+ ..++.. + ...++|+|+| |+..+.+ +.+++|
T Consensus 327 ~~~~~~~~~~l~~~d~~~~~~~~~~~~l-------------~~~~~~-~---~~~~~~spdg~~l~~~~~~~~~~~~~l~ 389 (723)
T 1xfd_A 327 PQGGRGKFYHITVSSSQPNSSNDNIQSI-------------TSGDWD-V---TKILAYDEKGNKIYFLSTEDLPRRRQLY 389 (723)
T ss_dssp CCSSSSCEEEEEEECSSCCSSSCCCCBS-------------CCSSSC-E---EEEEEEETTTTEEEEEESSSCTTCCEEE
T ss_pred ccCCCcceeEEEEEeccCCCCccceeEe-------------ecCCeE-E---EeeeEEcCCCCEEEEEEcCCCCcceEEE
Confidence 677 566777 344431 2222 112222 2 2235899999 6555544 889999
Q ss_pred ECCC
Q 000054 2540 QLED 2543 (2548)
Q Consensus 2540 DL~s 2543 (2548)
+++.
T Consensus 390 ~~~~ 393 (723)
T 1xfd_A 390 SANT 393 (723)
T ss_dssp EECS
T ss_pred EEeC
Confidence 9864
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-12 Score=180.43 Aligned_cols=259 Identities=12% Similarity=0.084 Sum_probs=185.6
Q ss_pred EEEEEEc-CCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCC-CeEEEEEccCCCEEEEEeCCCcEE-EE
Q 000054 2222 TRAFSSH-PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALA-SISALQFDHYGHRFASAALDGTVC-TW 2298 (2548)
Q Consensus 2222 V~~VsfS-PdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~-~VtsVaFSPdG~~LaSGS~DGtVr-VW 2298 (2548)
+.+++|+ |+|+++++++ ++.|.+|+..+++... + .. |.+ .+..++|+ +|+.+++++.++.+. +|
T Consensus 298 v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~---~~-------~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~ 364 (1045)
T 1k32_A 298 KFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-V---PE-------PLRIRYVRRGGD-TKVAFIHGTREGDFLGIY 364 (1045)
T ss_dssp GGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-C---SC-------CSCEEEEEECSS-SEEEEEEEETTEEEEEEE
T ss_pred cceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-c---cC-------CCcceEEeeeEc-CCCeEEEEECCCceEEEE
Confidence 4789999 9999999887 8899999998776432 2 11 335 79999999 999999999988888 89
Q ss_pred EcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEcc
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
|+.++.... +.+|...+. +|+|+|+.+++++ .++.|++||+.+ ++......+|.+.+.+++|+|
T Consensus 365 d~~~~~~~~---------l~~~~~~~~~~~~SpDG~~la~~~---~~~~v~~~d~~t--g~~~~~~~~~~~~v~~~~~Sp 430 (1045)
T 1k32_A 365 DYRTGKAEK---------FEENLGNVFAMGVDRNGKFAVVAN---DRFEIMTVDLET--GKPTVIERSREAMITDFTISD 430 (1045)
T ss_dssp ETTTCCEEE---------CCCCCCSEEEEEECTTSSEEEEEE---TTSEEEEEETTT--CCEEEEEECSSSCCCCEEECT
T ss_pred ECCCCCceE---------ecCCccceeeeEECCCCCEEEEEC---CCCeEEEEECCC--CceEEeccCCCCCccceEECC
Confidence 988664221 235555554 5999999999986 789999999976 556666668999999999999
Q ss_pred CCCCCCCCCCEEEEEeCCC----------cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCc--cCCCCCc
Q 000054 2377 NDLGSGSVSPLIVTGGKGG----------DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGS--KPGDQNG 2444 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DG----------tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v--~s~D~sv 2444 (2548)
+ +++|++++.++ .|++||+ .+++ ...+... ......+.|+|||+.+ .+.++..
T Consensus 431 D-------G~~la~~~~~~~~~~~~~~~~~i~l~d~---~~g~-~~~l~~~----~~~~~~~~~spdG~~l~~~s~~~~~ 495 (1045)
T 1k32_A 431 N-------SRFIAYGFPLKHGETDGYVMQAIHVYDM---EGRK-IFAATTE----NSHDYAPAFDADSKNLYYLSYRSLD 495 (1045)
T ss_dssp T-------SCEEEEEEEECSSTTCSCCEEEEEEEET---TTTE-EEECSCS----SSBEEEEEECTTSCEEEEEESCCCC
T ss_pred C-------CCeEEEEecCccccccCCCCCeEEEEEC---CCCc-EEEeeCC----CcccCCceEcCCCCEEEEEecccCC
Confidence 9 78888887654 9999994 4555 3333111 1122346788888862 2221111
Q ss_pred eEE------------------------------------------Ec---------ccCCCCCEEEEEEeCCCCEEEE--
Q 000054 2445 MLW------------------------------------------YI---------PKAHLGSVTRISTVPNTSLFLT-- 2471 (2548)
Q Consensus 2445 ~Iw------------------------------------------di---------~~gH~~~VtsLafSPdG~~LaS-- 2471 (2548)
..| +. +..|.+.+..++++|+|.++++
T Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~ 575 (1045)
T 1k32_A 496 PSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVP 575 (1045)
T ss_dssp CEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECC
T ss_pred cCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEec
Confidence 111 10 1236678899999999988875
Q ss_pred -----------EeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEE
Q 000054 2472 -----------GSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKL 2538 (2548)
Q Consensus 2472 -----------GS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrI 2538 (2548)
...++.|.+||+.+++.. .+ . ..+..+++|||| |++++.| .|++
T Consensus 576 ~~g~~~~~~~~~~~~~~l~~~d~~~~~~~-~l--------------~-------~~v~~~~~S~DG~~l~~~~~~-~i~~ 632 (1045)
T 1k32_A 576 VHGEFAAYYQGAPEKGVLLKYDVKTRKVT-EV--------------K-------NNLTDLRLSADRKTVMVRKDD-GKIY 632 (1045)
T ss_dssp CCCSHHHHHHCCCCCEEEEEEETTTCCEE-EE--------------E-------EEEEEEEECTTSCEEEEEETT-SCEE
T ss_pred ccCcccccccccCCCceEEEEECCCCcEE-Ee--------------e-------cCcceEEECCCCCEEEEEcCC-cEEE
Confidence 123557889999888753 22 1 235677999999 7777766 8999
Q ss_pred EECCCCc
Q 000054 2539 IQLEDYQ 2545 (2548)
Q Consensus 2539 WDL~sg~ 2545 (2548)
||+.++.
T Consensus 633 ~d~~~~~ 639 (1045)
T 1k32_A 633 TFPLEKP 639 (1045)
T ss_dssp EEESSCT
T ss_pred EeCccCc
Confidence 9998765
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.3e-12 Score=150.64 Aligned_cols=229 Identities=7% Similarity=-0.005 Sum_probs=154.3
Q ss_pred EEEEcCCCCEEEEEEC-CCeEEEEEcCCCce-eEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC---cEEEE
Q 000054 2224 AFSSHPLRPFFLVGSS-NTHIYLWEFGKDKA-TATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG---TVCTW 2298 (2548)
Q Consensus 2224 ~VsfSPdG~~LASGS~-DGsVrLWDl~tg~~-l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG---tVrVW 2298 (2548)
.++|+|+|+++++++. ++.|.+||..+++. ...+.. +...+.+++|+|+|++++++..++ .|.+|
T Consensus 44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~----------~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~ 113 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE----------GQSSMADVDITPDDQFAVTVTGLNHPFNMQSY 113 (331)
T ss_dssp EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE----------CSSCCCCEEECTTSSEEEECCCSSSSCEEEEE
T ss_pred eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc----------CCCCccceEECCCCCEEEEecCCCCcccEEEE
Confidence 8899999997776555 89999999998886 555432 123444599999999999655553 89999
Q ss_pred EcCCCcccccccCccceeccCCcc-cEEEEcCCCCEEEEEeccCCCCe-EEEEECCCCCCCcc---eeeeccCCCeEEEE
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAM-DVSYITSSGSVIAAAGHSSNGIN-VVVWDTLAPPTSSR---ASITCHEGGARSIS 2373 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~-~V~afSpdGslLATgG~SS~DGt-VrIWDl~t~~~k~v---~sl~gHs~~VtSLa 2373 (2548)
|+++++.... +..+.. .-.+++|+|+.+++++ ..++. |.+|++... +... .....+...+..++
T Consensus 114 d~~~~~~~~~--------~~~~~~~~~~~~spdg~~l~~~~--~~~~~~i~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~ 182 (331)
T 3u4y_A 114 SFLKNKFIST--------IPIPYDAVGIAISPNGNGLILID--RSSANTVRRFKIDAD-GVLFDTGQEFISGGTRPFNIT 182 (331)
T ss_dssp ETTTTEEEEE--------EECCTTEEEEEECTTSSCEEEEE--ETTTTEEEEEEECTT-CCEEEEEEEEECSSSSEEEEE
T ss_pred ECCCCCeEEE--------EECCCCccceEECCCCCEEEEEe--cCCCceEEEEEECCC-CcEeecCCccccCCCCccceE
Confidence 9988764322 212221 2235999998666554 25677 999998742 2221 11223456689999
Q ss_pred EccCCCCCCCCCC-EEEEEeCCCcEEEEeCCccccCce---eeeecCCCCCCCccccccccCCCCCC--cc-CCCCCceE
Q 000054 2374 VFDNDLGSGSVSP-LIVTGGKGGDVGIHDFRYIATGKT---KKHKHSDRGGSSINTCAHADAQTGSG--SK-PGDQNGML 2446 (2548)
Q Consensus 2374 fsP~dlg~gs~g~-lLVSGS~DGtVrLWDLR~l~TGk~---l~tl~~~~~~s~~~~~~vafSpdGk~--v~-s~D~sv~I 2446 (2548)
|+|+ ++ +++++..++.|++|| +.+++. +..+.. ......++++|+|++ +. ..++.+.+
T Consensus 183 ~spd-------g~~l~v~~~~~~~v~v~d---~~~~~~~~~~~~~~~-----~~~~~~~~~spdg~~l~v~~~~~~~i~~ 247 (331)
T 3u4y_A 183 FTPD-------GNFAFVANLIGNSIGILE---TQNPENITLLNAVGT-----NNLPGTIVVSRDGSTVYVLTESTVDVFN 247 (331)
T ss_dssp ECTT-------SSEEEEEETTTTEEEEEE---CSSTTSCEEEEEEEC-----SSCCCCEEECTTSSEEEEECSSEEEEEE
T ss_pred ECCC-------CCEEEEEeCCCCeEEEEE---CCCCcccceeeeccC-----CCCCceEEECCCCCEEEEEEcCCCEEEE
Confidence 9999 66 455666789999999 455665 555421 123356789999995 22 34566788
Q ss_pred EEcccCC--------------CC---CEEEEEEeCCCCEEEEEeC-CCcEEEEECCCCcE
Q 000054 2447 WYIPKAH--------------LG---SVTRISTVPNTSLFLTGSK-DGDVKLWDAKAAQL 2488 (2548)
Q Consensus 2447 wdi~~gH--------------~~---~VtsLafSPdG~~LaSGS~-DGtIrIWDl~Tgel 2488 (2548)
|+...+. .. .+..++|+|+|++|++++. ++.|.+||+.+...
T Consensus 248 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 248 FNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp EETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred EECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 8853221 11 2245899999998866655 66999999986554
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-12 Score=170.84 Aligned_cols=273 Identities=9% Similarity=-0.016 Sum_probs=168.8
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEcCCCcee-EEEeccCCC--CC-----CCCCCCCCeEEEEEccCCCEEEEEeCCCcE
Q 000054 2224 AFSSHPLRPFFLVGSSNTHIYLWEFGKDKAT-ATYGVLPAA--NV-----PPPYALASISALQFDHYGHRFASAALDGTV 2295 (2548)
Q Consensus 2224 ~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l-~t~~~l~gh--s~-----~~~~H~~~VtsVaFSPdG~~LaSGS~DGtV 2295 (2548)
.+.|. |..+++++.|+ | +||..+++.+ ..+...... .+ ....+...|.+++|+|+ ..++.+ .|+.|
T Consensus 30 ~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i 103 (706)
T 2z3z_A 30 GLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGL 103 (706)
T ss_dssp TCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEE
T ss_pred CCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEE
Confidence 35566 66778888888 8 9999998772 222211100 00 00011256999999999 666655 45999
Q ss_pred EEEEcCCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCC---CCCcceeeeccCCC--
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAP---PTSSRASITCHEGG-- 2368 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~---~~k~v~sl~gHs~~-- 2368 (2548)
.+||+.+++... +..+...+ ..|+|||+.|+++ .|+.|++||+.+. .++.......+...
T Consensus 104 ~~~d~~~~~~~~---------l~~~~~~~~~~~~SpdG~~la~~----~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~ 170 (706)
T 2z3z_A 104 VGFDMLARKVTY---------LFDTNEETASLDFSPVGDRVAYV----RNHNLYIARGGKLGEGMSRAIAVTIDGTETLV 170 (706)
T ss_dssp EEEETTTTEEEE---------EECCTTCCTTCEECTTSSEEEEE----ETTEEEEEECBCTTSCCCCCEESCSCCBTTEE
T ss_pred EEEECCCCceEE---------ccCCcccccCCcCCCCCCEEEEE----ECCeEEEEecCcccccCCCcEEeccCCCCCeE
Confidence 999998775322 12222222 2599999999986 4799999999750 02222222233332
Q ss_pred ------------eEEEEEccCCCCCCCCCCEEEEEe---------------------------------CCCcEEEEeCC
Q 000054 2369 ------------ARSISVFDNDLGSGSVSPLIVTGG---------------------------------KGGDVGIHDFR 2403 (2548)
Q Consensus 2369 ------------VtSLafsP~dlg~gs~g~lLVSGS---------------------------------~DGtVrLWDLR 2403 (2548)
+.++.|+|+ ++.|++++ .++.|++||
T Consensus 171 ~g~~~~~ee~~~~~~~~~SpD-------g~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d-- 241 (706)
T 2z3z_A 171 YGQAVHQREFGIEKGTFWSPK-------GSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYH-- 241 (706)
T ss_dssp ESSCCGGGCTTCCCSEEECTT-------SSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEE--
T ss_pred cccchhhhhcCCCceEEECCC-------CCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEE--
Confidence 488999999 78898887 457899999
Q ss_pred ccccCceeeeecCCCCCCCccccccccCCCCCCcc--CCCC-----CceEEEcccC----------CCC---CEEEEEEe
Q 000054 2404 YIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSK--PGDQ-----NGMLWYIPKA----------HLG---SVTRISTV 2463 (2548)
Q Consensus 2404 ~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~--s~D~-----sv~Iwdi~~g----------H~~---~VtsLafS 2463 (2548)
+.+++...... ..........+.|+|||+.+. ..++ .+.+|+...+ +.. .+.+++|+
T Consensus 242 -~~~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~s 318 (706)
T 2z3z_A 242 -LATGKTVYLQT--GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFL 318 (706)
T ss_dssp -TTTTEEEECCC--CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEEC
T ss_pred -CCCCceEeecc--CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceee
Confidence 45555443321 111223345788999999622 2333 6778876443 111 23568999
Q ss_pred C--CCCEEEEEeCCCcEEEEECC-CCcEEEEecccccccccccCcccCCCCceeecEEE-EEEcCCe--EE-EEECCC--
Q 000054 2464 P--NTSLFLTGSKDGDVKLWDAK-AAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTD-IQVVSRG--FL-SCGGDG-- 2534 (2548)
Q Consensus 2464 P--dG~~LaSGS~DGtIrIWDl~-Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vts-LafSPdG--La-SGS~DG-- 2534 (2548)
| +|+++++++.||.++||++. +++.+..+ .+|... +.+ ++|+|+| |+ +++.++
T Consensus 319 p~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l--------------~~~~~~----v~~~~~~spdg~~l~~~~~~~~~~ 380 (706)
T 2z3z_A 319 PGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV--------------TKGEWE----VTNFAGFDPKGTRLYFESTEASPL 380 (706)
T ss_dssp TTCSSEEEEEECTTSSCEEEEEETTSCEEEEC--------------CCSSSC----EEEEEEECTTSSEEEEEESSSCTT
T ss_pred cCCCCEEEEEEccCCccEEEEEECCCCEEEec--------------CCCCeE----EEeeeEEcCCCCEEEEEecCCCCc
Confidence 9 99999999999999999886 56666555 334332 333 5899999 54 455554
Q ss_pred --cEEEEECCCCc
Q 000054 2535 --SVKLIQLEDYQ 2545 (2548)
Q Consensus 2535 --tIrIWDL~sg~ 2545 (2548)
.|..||+.++.
T Consensus 381 ~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 381 ERHFYCIDIKGGK 393 (706)
T ss_dssp CBEEEEEETTCCC
T ss_pred eEEEEEEEcCCCC
Confidence 67777776654
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3e-12 Score=179.34 Aligned_cols=236 Identities=9% Similarity=0.016 Sum_probs=173.0
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCC-CCCCCCCCCeEEEEEc-cCCCEEEEEeCCCcEEEEEc
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAAN-VPPPYALASISALQFD-HYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs-~~~~~H~~~VtsVaFS-PdG~~LaSGS~DGtVrVWDl 2300 (2548)
...+|+|+|++++.+ .++.|++||.... .+..+....... .....|...+.+++|+ |+|+++++++ ++.|.+|++
T Consensus 248 ~~~~~SpDG~~la~~-~~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~ 324 (1045)
T 1k32_A 248 YPRHLNTDGRRILFS-KGGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDV 324 (1045)
T ss_dssp CEEEEEESSSCEEEE-ETTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECT
T ss_pred ceeeEcCCCCEEEEE-eCCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcC
Confidence 345788999999887 5899999998443 333332100000 0001133468999999 9999999988 889999999
Q ss_pred CCCcccccccCccceeccCCcc-cEE--EEcCCCCEEEEEeccCCCCeEE-EEECCCCCCCcceeeeccCCCeEEEEEcc
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAM-DVS--YITSSGSVIAAAGHSSNGINVV-VWDTLAPPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~-~V~--afSpdGslLATgG~SS~DGtVr-IWDl~t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
..+.... +..|.. .+. .|+ +|+.+++++ .++.+. +||+.. .+ ...+.+|...+..++|+|
T Consensus 325 ~~~~~~~---------~~~~~~~~~~~~~~s-dg~~l~~~s---~~~~l~~~~d~~~--~~-~~~l~~~~~~~~~~~~Sp 388 (1045)
T 1k32_A 325 SGTYVLK---------VPEPLRIRYVRRGGD-TKVAFIHGT---REGDFLGIYDYRT--GK-AEKFEENLGNVFAMGVDR 388 (1045)
T ss_dssp TSSBEEE---------CSCCSCEEEEEECSS-SEEEEEEEE---TTEEEEEEEETTT--CC-EEECCCCCCSEEEEEECT
T ss_pred CCCceEE---------ccCCCcceEEeeeEc-CCCeEEEEE---CCCceEEEEECCC--CC-ceEecCCccceeeeEECC
Confidence 8664221 334444 444 378 999999886 677888 889865 23 334447888999999999
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCC
Q 000054 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGS 2456 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~ 2456 (2548)
+ ++.|++++.++.|++|| +.+++..... .+|.+.
T Consensus 389 D-------G~~la~~~~~~~v~~~d---~~tg~~~~~~------------------------------------~~~~~~ 422 (1045)
T 1k32_A 389 N-------GKFAVVANDRFEIMTVD---LETGKPTVIE------------------------------------RSREAM 422 (1045)
T ss_dssp T-------SSEEEEEETTSEEEEEE---TTTCCEEEEE------------------------------------ECSSSC
T ss_pred C-------CCEEEEECCCCeEEEEE---CCCCceEEec------------------------------------cCCCCC
Confidence 9 78999999999999999 5556654443 468888
Q ss_pred EEEEEEeCCCCEEEEEeCCC----------cEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe
Q 000054 2457 VTRISTVPNTSLFLTGSKDG----------DVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG 2526 (2548)
Q Consensus 2457 VtsLafSPdG~~LaSGS~DG----------tIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG 2526 (2548)
|.+++|+|+|++|++++.++ .|++||+.+++ +..+ .+|... +..++|+|+|
T Consensus 423 v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l--------------~~~~~~----~~~~~~spdG 483 (1045)
T 1k32_A 423 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAA--------------TTENSH----DYAPAFDADS 483 (1045)
T ss_dssp CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEEC--------------SCSSSB----EEEEEECTTS
T ss_pred ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEe--------------eCCCcc----cCCceEcCCC
Confidence 99999999999999887754 99999999887 4333 344432 3557999999
Q ss_pred --EEEEECCCcEEEEECC
Q 000054 2527 --FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2527 --LaSGS~DGtIrIWDL~ 2542 (2548)
|++++.++..++|+..
T Consensus 484 ~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 484 KNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp CEEEEEESCCCCCEECSS
T ss_pred CEEEEEecccCCcCcchh
Confidence 8888988888888754
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-11 Score=153.10 Aligned_cols=254 Identities=8% Similarity=-0.006 Sum_probs=159.3
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcC-CCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCE--EEEEe---------
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFG-KDKATATYGVLPAANVPPPYALASISALQFDHYGHR--FASAA--------- 2290 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~-tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~--LaSGS--------- 2290 (2548)
..++|+|+|++|++++.+ .|.+|++. +++....... ..+ +.+.+++|+|+|++ +++++
T Consensus 43 ~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~-~~~--------g~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 112 (365)
T 1jof_A 43 SWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH-PIG--------GHPRANDADTNTRAIFLLAAKQPPYAVYAN 112 (365)
T ss_dssp SEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE-ECC--------SSGGGGCTTSCCEEEEEEECSSTTCCEEEE
T ss_pred cEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEe-ecC--------CCCccEEECCCCCEEEEEEecCCcceeccc
Confidence 568899999999998888 99999997 7765443221 110 22445889999994 45553
Q ss_pred ----CCCcEEEEEcCC-CcccccccCccceecc-CCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECC-CCCCCccee
Q 000054 2291 ----LDGTVCTWQLEV-GGRSNVRPMESCLCFS-SHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTL-APPTSSRAS 2361 (2548)
Q Consensus 2291 ----~DGtVrVWDl~t-gk~i~i~p~~s~~t~~-gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~-t~~~k~v~s 2361 (2548)
.+|++.+|+++. ++.... ...+. .+...+. .++|+|++++++. ..++.|++||+. ++....+..
T Consensus 113 ~~~~~~g~v~v~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~spdG~~l~~~~--~~~~~v~~~~~~~~g~~~~~~~ 185 (365)
T 1jof_A 113 PFYKFAGYGNVFSVSETGKLEKN-----VQNYEYQENTGIHGMVFDPTETYLYSAD--LTANKLWTHRKLASGEVELVGS 185 (365)
T ss_dssp EESSSCCEEEEEEECTTCCEEEE-----EEEEECCTTCCEEEEEECTTSSEEEEEE--TTTTEEEEEEECTTSCEEEEEE
T ss_pred eeecCCceEEEEccCCCCcCcce-----EeeEEeCCCCcceEEEECCCCCEEEEEc--CCCCEEEEEEECCCCCEEEeee
Confidence 689999999974 432111 11110 1222232 4899999888765 246899999997 321112233
Q ss_pred ee--ccCCCeEEEEEccCCCCCCCCCCEEEEEe-CCCcEEEEeCCccccCceee---eecCCCCCCCccccccccCCCCC
Q 000054 2362 IT--CHEGGARSISVFDNDLGSGSVSPLIVTGG-KGGDVGIHDFRYIATGKTKK---HKHSDRGGSSINTCAHADAQTGS 2435 (2548)
Q Consensus 2362 l~--gHs~~VtSLafsP~dlg~gs~g~lLVSGS-~DGtVrLWDLR~l~TGk~l~---tl~~~~~~s~~~~~~vafSpdGk 2435 (2548)
+. .|...+..++|+|+ ++++++++ .++.|.+|++. ..+++... .+.. .+.+
T Consensus 186 ~~~~~~g~~p~~~~~spd-------g~~l~v~~~~~~~v~v~~~~-~~~g~~~~~~~~~~~--------------~~~~- 242 (365)
T 1jof_A 186 VDAPDPGDHPRWVAMHPT-------GNYLYALMEAGNRICEYVID-PATHMPVYTHHSFPL--------------IPPG- 242 (365)
T ss_dssp EECSSTTCCEEEEEECTT-------SSEEEEEETTTTEEEEEEEC-TTTCCEEEEEEEEES--------------SCTT-
T ss_pred EecCCCCCCCCEeEECCC-------CCEEEEEECCCCeEEEEEEe-CCCCcEEEccceEEc--------------CCCC-
Confidence 33 24677999999999 67777766 47899999854 23454321 1100 0000
Q ss_pred CccCCCCCceEEEcccCCCC------CEEEEE-EeCCCCEEEEEeCCC------cEEEEECC-CCcEEEEeccccccccc
Q 000054 2436 GSKPGDQNGMLWYIPKAHLG------SVTRIS-TVPNTSLFLTGSKDG------DVKLWDAK-AAQLVYHWSKLHERHTF 2501 (2548)
Q Consensus 2436 ~v~s~D~sv~Iwdi~~gH~~------~VtsLa-fSPdG~~LaSGS~DG------tIrIWDl~-Tgell~tL~~~Hs~hsf 2501 (2548)
..+|.. .+..++ |+|+|++|++++.+. .|.+|++. ++++......
T Consensus 243 --------------~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~------- 301 (365)
T 1jof_A 243 --------------IPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFL------- 301 (365)
T ss_dssp --------------CCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEE-------
T ss_pred --------------cCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeee-------
Confidence 012332 578999 999999988776432 89999996 6765432100
Q ss_pred ccCcccCCCCceeecEEEEEEcC---Ce--EEEEEC-CCcEEEEECCCCc
Q 000054 2502 LQPSSRGFGGVVRAGVTDIQVVS---RG--FLSCGG-DGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2502 l~~tl~GH~~~V~a~VtsLafSP---dG--LaSGS~-DGtIrIWDL~sg~ 2545 (2548)
...+... +..++|+| +| |++++. +++|++|+++.+.
T Consensus 302 ----~~~~~~~----~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~ 343 (365)
T 1jof_A 302 ----SPTPTSG----GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp ----EECSSCC----TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred ----eecCCCC----cccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence 0111111 12347999 67 666665 5899999987653
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.40 E-value=6.6e-12 Score=169.57 Aligned_cols=272 Identities=8% Similarity=-0.014 Sum_probs=169.2
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC---------C
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD---------G 2293 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D---------G 2293 (2548)
..++|+|+|.+++++ ||+|++||+.+++....+..... ..+.....++.|||||++++.++.+ +
T Consensus 20 ~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 20 YSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTF-----DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTT-----TTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred cccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhh-----hhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 568999999999886 99999999999987666543211 1112234568999999999999887 5
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcce-eeeccCCCe-
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA-SITCHEGGA- 2369 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~-sl~gHs~~V- 2369 (2548)
.+.+||+.+++... +..|...+. .|||||+.||.+ .|+.|++||+..+ +..+ +..++...+
T Consensus 93 ~~~~~d~~~~~~~~---------l~~~~~~~~~~~~SPdG~~la~~----~~~~i~~~~~~~~--~~~~lt~~g~~~~~~ 157 (740)
T 4a5s_A 93 SYDIYDLNKRQLIT---------EERIPNNTQWVTWSPVGHKLAYV----WNNDIYVKIEPNL--PSYRITWTGKEDIIY 157 (740)
T ss_dssp EEEEEETTTTEECC---------SSCCCTTEEEEEECSSTTCEEEE----ETTEEEEESSTTS--CCEECCSCCBTTTEE
T ss_pred EEEEEECCCCcEEE---------cccCCCcceeeEECCCCCEEEEE----ECCeEEEEECCCC--ceEEEcCCCCcccee
Confidence 66799999886332 333444444 499999999987 4789999998753 2221 222333222
Q ss_pred ----------------EEEEEccCCCCCCCCCCEEEEEeCCCc-EEEEeCCccccCceeeeecCCCCCCCccccccccCC
Q 000054 2370 ----------------RSISVFDNDLGSGSVSPLIVTGGKGGD-VGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQ 2432 (2548)
Q Consensus 2370 ----------------tSLafsP~dlg~gs~g~lLVSGS~DGt-VrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSp 2432 (2548)
..+.|+|+ |+.|+.++.|.+ |++|++....... ........+.+..
T Consensus 158 ~g~~~~v~~ee~~~~~~~~~wSpD-------g~~la~~~~d~~~v~~~~~~~~~~~~----------~~~~~~~~~~yp~ 220 (740)
T 4a5s_A 158 NGITDWVYEEEVFSAYSALWWSPN-------GTFLAYAQFNDTEVPLIEYSFYSDES----------LQYPKTVRVPYPK 220 (740)
T ss_dssp ESBCCHHHHHHTSSSSBCEEECTT-------SSEEEEEEEECTTCCEEEEEECCSTT----------CSSCEEEEEECCB
T ss_pred cCcccccccchhcCCCcceEECCC-------CCEEEEEEEcccCCceEEEEeecCCC----------CCCCcceeecCCC
Confidence 35899999 788888876554 9999853211110 0001111223333
Q ss_pred CCCCccCCCCCceEEEccc-------------------CCCCCEEEEEEeCCCCEEEEEeC----CCcEEEEECCCCc--
Q 000054 2433 TGSGSKPGDQNGMLWYIPK-------------------AHLGSVTRISTVPNTSLFLTGSK----DGDVKLWDAKAAQ-- 2487 (2548)
Q Consensus 2433 dGk~v~s~D~sv~Iwdi~~-------------------gH~~~VtsLafSPdG~~LaSGS~----DGtIrIWDl~Tge-- 2487 (2548)
.|.. .....+++|++.. +|...+..++|+|||+.++.... +..|++||+.+|+
T Consensus 221 ~G~~--~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~ 298 (740)
T 4a5s_A 221 AGAV--NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGR 298 (740)
T ss_dssp TTSC--CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTE
T ss_pred CcCc--CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccc
Confidence 3321 1111344555433 27778999999999997666533 3479999999887
Q ss_pred --EEEEecccccccccccCcccCCCCceee-cEEEEEEcCCe--EE-EEEC-C--CcEEEEECCCCc
Q 000054 2488 --LVYHWSKLHERHTFLQPSSRGFGGVVRA-GVTDIQVVSRG--FL-SCGG-D--GSVKLIQLEDYQ 2545 (2548)
Q Consensus 2488 --ll~tL~~~Hs~hsfl~~tl~GH~~~V~a-~VtsLafSPdG--La-SGS~-D--GtIrIWDL~sg~ 2545 (2548)
+..... + .-.+|.+.+.. .....+|+||| |+ ..+. + ..|++|+++++.
T Consensus 299 ~~~~~~~~-------l---~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~ 355 (740)
T 4a5s_A 299 WNCLVARQ-------H---IEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD 355 (740)
T ss_dssp EEECGGGC-------E---EEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred cceeEEEE-------e---eeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence 221110 0 00334444420 01234799999 55 5553 3 468888887764
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-12 Score=174.13 Aligned_cols=271 Identities=10% Similarity=0.004 Sum_probs=162.1
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC---------CC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL---------DG 2293 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~---------DG 2293 (2548)
..++|+|+|.+++ .+.|++|++||..+++....+..... ....|.+++|+|||++|++++. |+
T Consensus 19 ~~~~~s~dg~~~~-~~~d~~i~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~ 90 (719)
T 1z68_A 19 FFPNWISGQEYLH-QSADNNIVLYNIETGQSYTILSNRTM-------KSVNASNYGLSPDRQFVYLESDYSKLWRYSYTA 90 (719)
T ss_dssp CCCEESSSSEEEE-ECTTSCEEEEESSSCCEEEEECHHHH-------HTTTCSEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred CccEECCCCeEEE-EcCCCCEEEEEcCCCcEEEEEccccc-------cccceeeEEECCCCCeEEEEecCceeEEeecce
Confidence 3568899996555 45799999999999987666532110 0024889999999999999876 79
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCccee-eeccCCCe---
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRAS-ITCHEGGA--- 2369 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~s-l~gHs~~V--- 2369 (2548)
.|++||+.+++.....+ +... ..-.+|+|||+.|+.+ .++.|++||+.++ +.... ..++...|
T Consensus 91 ~i~~~d~~~g~~~~~~~------l~~~-~~~~~~SPDG~~la~~----~~~~i~~~~~~~g--~~~~l~~~~~~~~v~~g 157 (719)
T 1z68_A 91 TYYIYDLSNGEFVRGNE------LPRP-IQYLCWSPVGSKLAYV----YQNNIYLKQRPGD--PPFQITFNGRENKIFNG 157 (719)
T ss_dssp EEEEEETTTTEECCSSC------CCSS-BCCEEECSSTTCEEEE----ETTEEEEESSTTS--CCEECCCCCBTTTEEES
T ss_pred EEEEEECCCCcccccee------cCcc-cccceECCCCCEEEEE----ECCeEEEEeCCCC--CcEEEecCCCcCCeEcc
Confidence 99999999886421111 1111 1223599999999997 4789999999753 33221 12333222
Q ss_pred --------------EEEEEccCCCCCCCCCCEEEEEeCC-CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCC
Q 000054 2370 --------------RSISVFDNDLGSGSVSPLIVTGGKG-GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTG 2434 (2548)
Q Consensus 2370 --------------tSLafsP~dlg~gs~g~lLVSGS~D-GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdG 2434 (2548)
.++.|+|+ |+.|++++.| +.+.+|.+...... .......+.+...|
T Consensus 158 ~~~~v~~ee~~~~~~~~~wSPD-------G~~la~~~~d~~~~~~~~~~~~~~~------------~~~~~~~~~yp~~g 218 (719)
T 1z68_A 158 IPDWVYEEEMLATKYALWWSPN-------GKFLAYAEFNDTDIPVIAYSYYGDE------------QYPRTINIPYPKAG 218 (719)
T ss_dssp SCCHHHHHHTTCSSCCEEECTT-------SSEEEEEEEECTTSCEEEEEECCSS------------SSCEEEEEECCBTT
T ss_pred cccceeeeecccCcccEEECCC-------CCEEEEEEECCCCCceEEeeccCCC------------CCccceeecCCCCC
Confidence 48999999 7899988765 45555543211100 00001111122222
Q ss_pred CCccCCCCCceEEEcc----------------cCCCCCEEEEEEeCCCCEEEEEeCC----CcEEEEE----CCCCcEEE
Q 000054 2435 SGSKPGDQNGMLWYIP----------------KAHLGSVTRISTVPNTSLFLTGSKD----GDVKLWD----AKAAQLVY 2490 (2548)
Q Consensus 2435 k~v~s~D~sv~Iwdi~----------------~gH~~~VtsLafSPdG~~LaSGS~D----GtIrIWD----l~Tgell~ 2490 (2548)
.. .....+++|++. .+|...+.+++|+||++++++.... ..|.+|| +.+++...
T Consensus 219 ~~--~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~ 296 (719)
T 1z68_A 219 AK--NPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPK 296 (719)
T ss_dssp SC--CCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCG
T ss_pred CC--CCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEE
Confidence 11 112234555532 2477789999999999888875433 2488899 77776442
Q ss_pred EecccccccccccCcccCCCCceee-cEEEEEEcCCe--EE--EEECCC--cEEEEECCCCc
Q 000054 2491 HWSKLHERHTFLQPSSRGFGGVVRA-GVTDIQVVSRG--FL--SCGGDG--SVKLIQLEDYQ 2545 (2548)
Q Consensus 2491 tL~~~Hs~hsfl~~tl~GH~~~V~a-~VtsLafSPdG--La--SGS~DG--tIrIWDL~sg~ 2545 (2548)
.+.. ...+|.+.+.. ....++|+||| ++ ++..|| .|.+|++.++.
T Consensus 297 ~~~~----------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 297 TQEH----------IEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp GGEE----------EEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT
T ss_pred EEec----------ccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc
Confidence 1100 00244444430 00134899999 44 344566 56666766543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.36 E-value=7.3e-11 Score=143.08 Aligned_cols=218 Identities=9% Similarity=0.065 Sum_probs=139.7
Q ss_pred EEEEEcCCCCEEEEEE-CCCeEEEEEcCCCceeEEEeccC--CCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2223 RAFSSHPLRPFFLVGS-SNTHIYLWEFGKDKATATYGVLP--AANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS-~DGsVrLWDl~tg~~l~t~~~l~--ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
..++|+|+|++|++++ .++.|++|++........+.... +.......+...+.+++|+|+|+.+++...++.|.+|+
T Consensus 89 ~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~ 168 (347)
T 3hfq_A 89 AYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYN 168 (347)
T ss_dssp SEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEE
Confidence 5678889999988887 78999999996322222222111 10000111234689999999999666667789999999
Q ss_pred cC-CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCc--ceeeeccC------CCeE
Q 000054 2300 LE-VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--RASITCHE------GGAR 2370 (2548)
Q Consensus 2300 l~-tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~--v~sl~gHs------~~Vt 2370 (2548)
+. ++...... ......+....-.+|+|+|+++++++ ..++.|.+|++....++. +..+.... ..+.
T Consensus 169 ~~~~g~~~~~~---~~~~~~g~~p~~~~~spdg~~l~v~~--~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 243 (347)
T 3hfq_A 169 VSDAGQLSEQS---VLTMEAGFGPRHLVFSPDGQYAFLAG--ELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAA 243 (347)
T ss_dssp ECTTSCEEEEE---EEECCTTCCEEEEEECTTSSEEEEEE--TTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEE
T ss_pred ECCCCcEEEee---eEEcCCCCCCceEEECCCCCEEEEEe--CCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcce
Confidence 98 33211110 00001111111236999999777765 378999999987422322 22333222 3588
Q ss_pred EEEEccCCCCCCCCCCEE-EEEeCCCcEEEEeCCccccC--ceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEE
Q 000054 2371 SISVFDNDLGSGSVSPLI-VTGGKGGDVGIHDFRYIATG--KTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLW 2447 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lL-VSGS~DGtVrLWDLR~l~TG--k~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iw 2447 (2548)
.++|+|+ +++| +++..++.|.+||+.. .+ +.+..+
T Consensus 244 ~i~~spd-------G~~l~v~~~~~~~v~v~~~~~--~g~~~~~~~~--------------------------------- 281 (347)
T 3hfq_A 244 AIRLSHD-------GHFLYVSNRGYNTLAVFAVTA--DGHLTLIQQI--------------------------------- 281 (347)
T ss_dssp EEEECTT-------SCEEEEEEETTTEEEEEEECG--GGCEEEEEEE---------------------------------
T ss_pred eEEECCC-------CCEEEEEeCCCCEEEEEEECC--CCcEEEeEEE---------------------------------
Confidence 9999999 6655 6677799999999541 22 111111
Q ss_pred EcccCCCCCEEEEEEeCCCCEEEEEeC-CCcEEEE--ECCCCcEEE
Q 000054 2448 YIPKAHLGSVTRISTVPNTSLFLTGSK-DGDVKLW--DAKAAQLVY 2490 (2548)
Q Consensus 2448 di~~gH~~~VtsLafSPdG~~LaSGS~-DGtIrIW--Dl~Tgell~ 2490 (2548)
..+...+..++|+|+|++|++++. ++.|.+| |..+|++..
T Consensus 282 ---~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 282 ---STEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp ---ECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred ---ecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 334556789999999999888876 4899999 556777653
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=6e-10 Score=131.55 Aligned_cols=242 Identities=9% Similarity=0.137 Sum_probs=166.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEE-ccCCCEEEEEeC-CCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQF-DHYGHRFASAAL-DGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaF-SPdG~~LaSGS~-DGtVrVWD 2299 (2548)
..+++++++|.++++...++.|++||.. ++.+..+.... ....+...+..+++ .++++.+++... ++.|.+||
T Consensus 32 p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~----~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 32 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECG----KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBS----SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred CceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccC----CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 4788888999999988899999999977 55555553211 11234567899999 467776666543 89999999
Q ss_pred cCCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee--ccCCCeEEEEEc
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT--CHEGGARSISVF 2375 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~--gHs~~VtSLafs 2375 (2548)
. +++..... ...+...+ .+++++|+++++.. .++.|.+||.. ++.+..+. .+...+.+++++
T Consensus 107 ~-~g~~~~~~-------~~~~~~~~~~i~~~~~g~l~v~~~---~~~~i~~~~~~---g~~~~~~~~~~~~~~p~~i~~~ 172 (286)
T 1q7f_A 107 Q-YGQFVRKF-------GATILQHPRGVTVDNKGRIIVVEC---KVMRVIIFDQN---GNVLHKFGCSKHLEFPNGVVVN 172 (286)
T ss_dssp T-TSCEEEEE-------CTTTCSCEEEEEECTTSCEEEEET---TTTEEEEECTT---SCEEEEEECTTTCSSEEEEEEC
T ss_pred C-CCcEEEEe-------cCccCCCceEEEEeCCCCEEEEEC---CCCEEEEEcCC---CCEEEEeCCCCccCCcEEEEEC
Confidence 4 44322111 01122222 24789998777753 67899999964 34444443 345678999999
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCC
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG 2455 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~ 2455 (2548)
++ +.++++...++.|++||. .++.+..+. ..++..
T Consensus 173 ~~-------g~l~v~~~~~~~i~~~~~----~g~~~~~~~----------------------------------~~g~~~ 207 (286)
T 1q7f_A 173 DK-------QEIFISDNRAHCVKVFNY----EGQYLRQIG----------------------------------GEGITN 207 (286)
T ss_dssp SS-------SEEEEEEGGGTEEEEEET----TCCEEEEES----------------------------------CTTTSC
T ss_pred CC-------CCEEEEECCCCEEEEEcC----CCCEEEEEc----------------------------------cCCccC
Confidence 98 668888888999999994 234444430 012345
Q ss_pred CEEEEEEeCCCCEEEEEeCCC-cEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECC
Q 000054 2456 SVTRISTVPNTSLFLTGSKDG-DVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGD 2533 (2548)
Q Consensus 2456 ~VtsLafSPdG~~LaSGS~DG-tIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~D 2533 (2548)
.+..++++|+|+++++...++ .|.+||. +++.+.++. .+... ..+.+++++|+| ++.++.|
T Consensus 208 ~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~--------------~~~~~--~~~~~i~~~~~g~l~vs~~~ 270 (286)
T 1q7f_A 208 YPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALE--------------SKVKH--AQCFDVALMDDGSVVLASKD 270 (286)
T ss_dssp SEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEE--------------ESSCC--SCEEEEEEETTTEEEEEETT
T ss_pred CCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEc--------------ccCCC--CcceeEEECCCCcEEEECCC
Confidence 778999999999999988886 9999995 577776662 11110 124678999999 5544789
Q ss_pred CcEEEEECCCC
Q 000054 2534 GSVKLIQLEDY 2544 (2548)
Q Consensus 2534 GtIrIWDL~sg 2544 (2548)
++|++|++...
T Consensus 271 ~~v~v~~~~~~ 281 (286)
T 1q7f_A 271 YRLYIYRYVQL 281 (286)
T ss_dssp TEEEEEECSCC
T ss_pred CeEEEEEcccc
Confidence 99999998654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.7e-10 Score=138.74 Aligned_cols=251 Identities=11% Similarity=0.072 Sum_probs=172.8
Q ss_pred EEEEEEcCCCCEEEEEECC------------------------CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSN------------------------THIYLWEFGKDKATATYGVLPAANVPPPYALASISAL 2277 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~D------------------------GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsV 2277 (2548)
+.+++++|+|+++++...+ +.|.+||..+++....+.. .+......+
T Consensus 26 v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---------~~~~~p~gi 96 (329)
T 3fvz_A 26 VSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGK---------NLFYLPHGL 96 (329)
T ss_dssp EEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECT---------TTCSSEEEE
T ss_pred ceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCC---------CccCCceEE
Confidence 4888999999999988777 4799999998887665431 234678999
Q ss_pred EEccCCCEEEEEeCCCcEEEEEcCCCc-ccccc-cCccceeccCCcccE--EEEcC-CCCEEEEEeccCCCCeEEEEECC
Q 000054 2278 QFDHYGHRFASAALDGTVCTWQLEVGG-RSNVR-PMESCLCFSSHAMDV--SYITS-SGSVIAAAGHSSNGINVVVWDTL 2352 (2548)
Q Consensus 2278 aFSPdG~~LaSGS~DGtVrVWDl~tgk-~i~i~-p~~s~~t~~gH~~~V--~afSp-dGslLATgG~SS~DGtVrIWDl~ 2352 (2548)
+++++|+.+++...++.|++||..... ..... .....-.-.++.... .+++| ++.++++.+. .++.|++||..
T Consensus 97 a~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~--~~~~I~~~~~~ 174 (329)
T 3fvz_A 97 SIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY--CNSRIVQFSPS 174 (329)
T ss_dssp EECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS--SCCEEEEECTT
T ss_pred EECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC--CCCeEEEEcCC
Confidence 999999988888889999999986431 11100 000000001222222 25888 7888777621 47899999953
Q ss_pred CCCCCcceeeecc----------CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCC
Q 000054 2353 APPTSSRASITCH----------EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSS 2422 (2548)
Q Consensus 2353 t~~~k~v~sl~gH----------s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~ 2422 (2548)
++.+..+... -.....++++|+. +.++++...++.|++|| ..+|+.+..+..
T Consensus 175 ---g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~------g~l~v~d~~~~~I~~~~---~~~G~~~~~~~~------ 236 (329)
T 3fvz_A 175 ---GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHL------DQLCVADRENGRIQCFK---TDTKEFVREIKH------ 236 (329)
T ss_dssp ---SCEEEEECEECCSSSCCTTEESCEEEEEEETTT------TEEEEEETTTTEEEEEE---TTTCCEEEEECC------
T ss_pred ---CCEEEEeccCCCCCCCCCcccCCCcEEEEECCC------CEEEEEECCCCEEEEEE---CCCCcEEEEEec------
Confidence 4555555322 2348999999974 66888888899999999 556777666510
Q ss_pred ccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeC------CCCEEEEEeCCCcEEEEECCCCcEEEEecccc
Q 000054 2423 INTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVP------NTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLH 2496 (2548)
Q Consensus 2423 ~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSP------dG~~LaSGS~DGtIrIWDl~Tgell~tL~~~H 2496 (2548)
..+...+.+++++| +|+..++.+.+..|++||..+++.+.++..
T Consensus 237 ----------------------------~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~-- 286 (329)
T 3fvz_A 237 ----------------------------ASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP-- 286 (329)
T ss_dssp ----------------------------TTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC--
T ss_pred ----------------------------cccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC--
Confidence 23556777888888 333333334456999999999999987720
Q ss_pred cccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000054 2497 ERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2497 s~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
..++. ..+.+++++|+| +++...+++|++|+++..
T Consensus 287 ---------~~~~~----~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 287 ---------VRKHF----DMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp ---------SSSCC----SSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred ---------CCCcc----CCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 01222 235678999999 678888999999998653
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.5e-11 Score=143.22 Aligned_cols=198 Identities=12% Similarity=0.065 Sum_probs=145.1
Q ss_pred EEEEEcCCCCEEEEEE------------CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe
Q 000054 2223 RAFSSHPLRPFFLVGS------------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA 2290 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS------------~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS 2290 (2548)
..++|+|+|+++++++ .++.|.+||..+++....+.. ...+.+++|+|+|++++++
T Consensus 85 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----------~~~~~~~~~s~dg~~l~~~- 152 (337)
T 1pby_B 85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-----------PRQITMLAWARDGSKLYGL- 152 (337)
T ss_dssp TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-----------CSSCCCEEECTTSSCEEEE-
T ss_pred cceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-----------CCCcceeEECCCCCEEEEe-
Confidence 4577889999998876 679999999999887776642 1347788999999988888
Q ss_pred CCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCC-----------------------eEE
Q 000054 2291 LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGI-----------------------NVV 2347 (2548)
Q Consensus 2291 ~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DG-----------------------tVr 2347 (2548)
++.|.+||+.+++.....+ ...+...+ .++|+|..++.++ ..++ .|.
T Consensus 153 -~~~i~~~d~~~~~~~~~~~------~~~~~~~~-~~s~dg~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 222 (337)
T 1pby_B 153 -GRDLHVMDPEAGTLVEDKP------IQSWEAET-YAQPDVLAVWNQH--ESSGVMATPFYTARKDIDPADPTAYRTGLL 222 (337)
T ss_dssp -SSSEEEEETTTTEEEEEEC------STTTTTTT-BCCCBCCCCCCCC--TTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred -CCeEEEEECCCCcEeeeee------ccccCCCc-eeCCCccEEeeec--cCCCceeeeeeccccccccccccccccceE
Confidence 6899999998875432211 11111122 4677877665543 1222 478
Q ss_pred EEECCCCCCCc-ceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000054 2348 VWDTLAPPTSS-RASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2348 IWDl~t~~~k~-v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
+||+.+. +. ...+..+...+.+++|+|+ ++.++++ ++.|.+|| +.+++.+..+
T Consensus 223 ~~d~~~~--~~~~~~~~~~~~~~~~~~~s~d-------g~~l~~~--~~~v~~~d---~~~~~~~~~~------------ 276 (337)
T 1pby_B 223 TMDLETG--EMAMREVRIMDVFYFSTAVNPA-------KTRAFGA--YNVLESFD---LEKNASIKRV------------ 276 (337)
T ss_dssp EEETTTC--CEEEEEEEECSSCEEEEEECTT-------SSEEEEE--ESEEEEEE---TTTTEEEEEE------------
T ss_pred EEeCCCC--CceEeecCCCCCceeeEEECCC-------CCEEEEe--CCeEEEEE---CCCCcCccee------------
Confidence 9999763 33 3344567778899999998 6788877 79999999 4556655443
Q ss_pred ccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000054 2427 AHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2427 ~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
. ....+.+++|+|+|++|++++.|+.|++||+.+++.+..++
T Consensus 277 ------------------------~-~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 277 ------------------------P-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp ------------------------E-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred ------------------------c-CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 1 12356789999999999999999999999999999998874
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.7e-11 Score=144.99 Aligned_cols=276 Identities=10% Similarity=-0.041 Sum_probs=166.0
Q ss_pred EEEcCCCCEEEEEEC-CC--eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2225 FSSHPLRPFFLVGSS-NT--HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2225 VsfSPdG~~LASGS~-DG--sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
.+|+|||++|+.++. +| .|.+||..+++...... .+...+..+.|+|||+.|+.++.++.|.+||+.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~----------~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~ 110 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE----------GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLA 110 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC----------SSCBCSSSCEECTTSSEEEEEETTTEEEEEETT
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee----------CCCCCccceEEcCCCCEEEEEeCCCeEEEEECC
Confidence 568899999998877 67 48888988877544321 122344467899999999999999999999999
Q ss_pred CCcccccccCccceeccCCcccE----EEEcCCCCEEEEEec-------------------cCCCCeEEEEECCCCCCCc
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDV----SYITSSGSVIAAAGH-------------------SSNGINVVVWDTLAPPTSS 2358 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V----~afSpdGslLATgG~-------------------SS~DGtVrIWDl~t~~~k~ 2358 (2548)
+++...+ ...+...+ ..+++++++++.... ...+..|.+||+.+ + .
T Consensus 111 ~g~~~~~--------~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~--g-~ 179 (388)
T 3pe7_A 111 TLEENVV--------YQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT--G-E 179 (388)
T ss_dssp TCCEEEE--------EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT--C-C
T ss_pred CCcceee--------eechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC--C-c
Confidence 8764322 22222222 125899998874310 01457899999976 3 3
Q ss_pred ceeeeccCCCeEEEEEcc-CCCCCCCCCCEEEEEeCC------CcEEEEeCCccccCceeeeecCCCCCCCccccccccC
Q 000054 2359 RASITCHEGGARSISVFD-NDLGSGSVSPLIVTGGKG------GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADA 2431 (2548)
Q Consensus 2359 v~sl~gHs~~VtSLafsP-~dlg~gs~g~lLVSGS~D------GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafS 2431 (2548)
...+..+...+..+.|+| + +..|+....+ ..|.++|. ..+.. ..+.. ...........|+
T Consensus 180 ~~~l~~~~~~~~~~~~sp~d-------g~~l~~~~~~~~~~~~~~l~~~d~---~~~~~-~~l~~--~~~~~~~~~~~~s 246 (388)
T 3pe7_A 180 STVILQENQWLGHPIYRPYD-------DSTVAFCHEGPHDLVDARMWLINE---DGTNM-RKVKT--HAEGESCTHEFWV 246 (388)
T ss_dssp EEEEEEESSCEEEEEEETTE-------EEEEEEEECSCTTTSSCSEEEEET---TSCCC-EESCC--CCTTEEEEEEEEC
T ss_pred eEEeecCCccccccEECCCC-------CCEEEEEEecCCCCCcceEEEEeC---CCCce-EEeee--CCCCcccccceEC
Confidence 445556777899999999 7 6677776653 36777773 33332 22211 1111123356799
Q ss_pred CCCCCccC-----CCC--CceEEEcccCCCCCEE-------------EEEEeCCCCEEEEE---------eCCCcEEEEE
Q 000054 2432 QTGSGSKP-----GDQ--NGMLWYIPKAHLGSVT-------------RISTVPNTSLFLTG---------SKDGDVKLWD 2482 (2548)
Q Consensus 2432 pdGk~v~s-----~D~--sv~Iwdi~~gH~~~Vt-------------sLafSPdG~~LaSG---------S~DGtIrIWD 2482 (2548)
|||+.++. ... .+++|++..+....+. .++|+|+|+.|+.. ..+..|++||
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d 326 (388)
T 3pe7_A 247 PDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFN 326 (388)
T ss_dssp TTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEE
T ss_pred CCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEe
Confidence 99996321 112 2778876443221111 12689999887754 4567999999
Q ss_pred CCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EE-EEECCCcEEEEECC
Q 000054 2483 AKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FL-SCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2483 l~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--La-SGS~DGtIrIWDL~ 2542 (2548)
+.+++... +.. +.. .. ..+.+... ..+.+++|+||| |+ ++..+|...+|.++
T Consensus 327 ~~~~~~~~-l~~-~~~-~~--~~~~~~~~---~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 327 MKNGTQHR-VAR-HDT-SW--KVFEGDRQ---VTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp TTTTEEEE-EEE-CCC-CC--CCBTTBSS---TTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccCCceEE-ecc-ccC-cc--cccccccc---cCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 99887643 310 100 00 00000000 013445899999 55 44457777777653
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.7e-11 Score=159.65 Aligned_cols=283 Identities=12% Similarity=0.059 Sum_probs=173.3
Q ss_pred EEEEEEcCCCCEEEEEEC---------CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000054 2222 TRAFSSHPLRPFFLVGSS---------NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~---------DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
+.+++|+|||++|++++. ++.|++||+.+++.+.... + ...+..++|+|||+.|+++. |
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l----------~~~~~~~~~SPDG~~la~~~-~ 129 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-L----------PRPIQYLCWSPVGSKLAYVY-Q 129 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-C----------CSSBCCEEECSSTTCEEEEE-T
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-c----------CcccccceECCCCCEEEEEE-C
Confidence 368899999999998876 7899999999887521110 0 14588899999999999986 7
Q ss_pred CcEEEEEcCCCcccccccCc-cceeccCCccc-----------EEEEcCCCCEEEEEeccCCC-----------------
Q 000054 2293 GTVCTWQLEVGGRSNVRPME-SCLCFSSHAMD-----------VSYITSSGSVIAAAGHSSNG----------------- 2343 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~-s~~t~~gH~~~-----------V~afSpdGslLATgG~SS~D----------------- 2343 (2548)
+.|++||+.+++...+.... ....+.++... -.+|+|||+.|+++.. ++
T Consensus 130 ~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~--d~~~~~~~~~~~~~~~~~~ 207 (719)
T 1z68_A 130 NNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEF--NDTDIPVIAYSYYGDEQYP 207 (719)
T ss_dssp TEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEE--ECTTSCEEEEEECCSSSSC
T ss_pred CeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEE--CCCCCceEEeeccCCCCCc
Confidence 89999999887643321100 01112233221 2469999999998752 11
Q ss_pred ----------------CeEEEEECCCCCCCcc--------eeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCC----C
Q 000054 2344 ----------------INVVVWDTLAPPTSSR--------ASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKG----G 2395 (2548)
Q Consensus 2344 ----------------GtVrIWDl~t~~~k~v--------~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~D----G 2395 (2548)
..|++||+.. ++.. ..+.+|...+.+++|+|+ +.++++.... .
T Consensus 208 ~~~~~~yp~~g~~~~~~~l~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD-------~~~~~~~~~~~~~~~ 278 (719)
T 1z68_A 208 RTINIPYPKAGAKNPVVRIFIIDTTY--PAYVGPQEVPVPAMIASSDYYFSWLTWVTD-------ERVCLQWLKRVQNVS 278 (719)
T ss_dssp EEEEEECCBTTSCCCEEEEEEEESSC--HHHHCCEECCCCHHHHTSCEEEEEEEESSS-------SEEEEEEEESSTTEE
T ss_pred cceeecCCCCCCCCCeeEEEEEECCC--CCccceeEccCCccCCCCcceEEEeEEeCC-------CeEEEEEeccccCeE
Confidence 1788999975 2221 223468888999999999 5666664432 2
Q ss_pred cEEEEe----CCccccCceeeeec--CCCCCCCcc---ccccccCCCCCCc----cCCCCC--ceEEEcc-------cCC
Q 000054 2396 DVGIHD----FRYIATGKTKKHKH--SDRGGSSIN---TCAHADAQTGSGS----KPGDQN--GMLWYIP-------KAH 2453 (2548)
Q Consensus 2396 tVrLWD----LR~l~TGk~l~tl~--~~~~~s~~~---~~~vafSpdGk~v----~s~D~s--v~Iwdi~-------~gH 2453 (2548)
.|.+|| +. ++++...+. ......... .....|+|||+.+ ...++. +.+|+.. ..+
T Consensus 279 ~l~~~d~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~ 355 (719)
T 1z68_A 279 VLSICDFREDWQ---TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSG 355 (719)
T ss_dssp EEEEEEECSSSS---SEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCS
T ss_pred EEEEEcccCCCC---CCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccC
Confidence 488888 43 233322210 000001011 1256799999852 223443 4444432 234
Q ss_pred CCCEEEEEEeCCCCEEEEEeCC-----CcEEEEECCC--CcE-EEEecccccccccccCcccCCCCceeecEEEEEEcCC
Q 000054 2454 LGSVTRISTVPNTSLFLTGSKD-----GDVKLWDAKA--AQL-VYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSR 2525 (2548)
Q Consensus 2454 ~~~VtsLafSPdG~~LaSGS~D-----GtIrIWDl~T--gel-l~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPd 2525 (2548)
...|..+.+. +++.++..+.+ +.+++|.+.. +.. ...+. ..+.+|.. .+..+.|+|+
T Consensus 356 ~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~----------~~~~~~~~----~~~~~~~s~d 420 (719)
T 1z68_A 356 KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVT----------CHLRKERC----QYYTASFSDY 420 (719)
T ss_dssp SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESS----------TTTTTTTB----CBEEEEECGG
T ss_pred ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceecc----------CccCCCCC----ceEEEEECCC
Confidence 5567888777 77777666654 8889998753 321 22221 11223432 2355689999
Q ss_pred e--EE-EEECC--CcEEEEECCCCc
Q 000054 2526 G--FL-SCGGD--GSVKLIQLEDYQ 2545 (2548)
Q Consensus 2526 G--La-SGS~D--GtIrIWDL~sg~ 2545 (2548)
| ++ +++.+ ..+.+||+.++.
T Consensus 421 g~~l~~~~s~~~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 421 AKYYALVCYGPGIPISTLHDGRTDQ 445 (719)
T ss_dssp GSSEEEEECCBSSCEEEEECSSSCC
T ss_pred CCEEEEEcCCCCCCeEEEEECCCCC
Confidence 8 44 55544 468899987764
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.28 E-value=9.9e-10 Score=136.31 Aligned_cols=260 Identities=12% Similarity=0.084 Sum_probs=160.5
Q ss_pred CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe----------CCCcEEEEEcCCCccccc
Q 000054 2239 SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA----------LDGTVCTWQLEVGGRSNV 2308 (2548)
Q Consensus 2239 ~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS----------~DGtVrVWDl~tgk~i~i 2308 (2548)
.|+.|.+||..+++.+..+.. +..+ .++|+|+|++++++. .+++|.+||..+++....
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~----------g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~ 96 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPT----------AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKE 96 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEEC----------CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEE
T ss_pred ccCeEEEEECCCCeEEEEecC----------CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEE
Confidence 478999999999988776642 1122 899999999999986 367899999987754332
Q ss_pred ccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCccee-eeccCCCeEEEEEccCCCCCCCCCCE
Q 000054 2309 RPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRAS-ITCHEGGARSISVFDNDLGSGSVSPL 2387 (2548)
Q Consensus 2309 ~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~s-l~gHs~~VtSLafsP~dlg~gs~g~l 2387 (2548)
.+........+....-..++|+|++++++... .++.|.+||+.+ .+.+.. +.. .....+.+.|.+ ...
T Consensus 97 i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~-~~~~v~v~d~~~--~~~~~~~i~~--~~~~~v~~~p~~------~~~ 165 (361)
T 2oiz_A 97 ISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS-PATSIGIVDVAK--GDYVEDVTAA--AGCWSVIPQPNR------PRS 165 (361)
T ss_dssp EEECTTBCCBCCCGGGEEECTTSSEEEEEEES-SSEEEEEEETTT--TEEEEEEGGG--TTEEEEEECTTS------SSE
T ss_pred EEcCccccccCCCcceEEECCCCCEEEEECCC-CCCeEEEEECCC--CcEEEEEecC--CCcceeEEcCCC------Cee
Confidence 11100000001111223589999999987521 368999999986 455554 432 233446677773 468
Q ss_pred EEEEeCCCcEEEEeCCccccCceeeeecCCCC-CCCccccccccCCCCCC--ccCCCCCceEEEcccC------------
Q 000054 2388 IVTGGKGGDVGIHDFRYIATGKTKKHKHSDRG-GSSINTCAHADAQTGSG--SKPGDQNGMLWYIPKA------------ 2452 (2548)
Q Consensus 2388 LVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~-~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~~g------------ 2452 (2548)
+++.+.||.+.+|++. ..++.......... ........+..++++.. ....++.+.+++....
T Consensus 166 ~~~~~~dg~~~~v~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~ 243 (361)
T 2oiz_A 166 FMTICGDGGLLTINLG--EDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLN 243 (361)
T ss_dssp EEEEETTSSEEEEEEC--TTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCC
T ss_pred EEEECCCCcEEEEEEC--CCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccC
Confidence 8899999999999953 22444322110000 00000112223344432 2334455666664211
Q ss_pred ----CCC----CEEEEEEeCCCCEEEEEeC-----------CCcEEEEECCCCcEEEEecccccccccccCcccCCCCce
Q 000054 2453 ----HLG----SVTRISTVPNTSLFLTGSK-----------DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVV 2513 (2548)
Q Consensus 2453 ----H~~----~VtsLafSPdG~~LaSGS~-----------DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V 2513 (2548)
+.+ ...-++|+|+++.++.+.. ++.|.+||+.+++.+.+++ .+.
T Consensus 244 ~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~--------------~~~--- 306 (361)
T 2oiz_A 244 DEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP--------------GRD--- 306 (361)
T ss_dssp HHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE--------------CTT---
T ss_pred ccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe--------------cCC---
Confidence 000 1112789999887776643 3489999999999998883 222
Q ss_pred eecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000054 2514 RAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2514 ~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
+.+++|+|+| +++++. ++|.+||..++
T Consensus 307 ---p~~ia~spdg~~l~v~n~-~~v~v~D~~t~ 335 (361)
T 2oiz_A 307 ---ALSMTIDQQRNLMLTLDG-GNVNVYDISQP 335 (361)
T ss_dssp ---CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred ---eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence 3566999999 555555 99999999987
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.4e-10 Score=139.09 Aligned_cols=238 Identities=10% Similarity=0.031 Sum_probs=143.4
Q ss_pred EEEEEcCCCCEEE-EEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC---------
Q 000054 2223 RAFSSHPLRPFFL-VGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD--------- 2292 (2548)
Q Consensus 2223 ~~VsfSPdG~~LA-SGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D--------- 2292 (2548)
..++|+|+|++++ ++..++.|.+||..+++....+..... ...+...+..++|+|+|+++++++.+
T Consensus 46 ~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~----~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 121 (349)
T 1jmx_B 46 GTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV----PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 121 (349)
T ss_dssp CEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS----TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred ceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccc----cccccccccceEECCCCCEEEEEcccccccccccc
Confidence 5678899998665 556789999999999988776642110 00001347889999999999999866
Q ss_pred ---CcEEEEEcCCCcccccccCccceeccCCcc-cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccC-C
Q 000054 2293 ---GTVCTWQLEVGGRSNVRPMESCLCFSSHAM-DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE-G 2367 (2548)
Q Consensus 2293 ---GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~-~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs-~ 2367 (2548)
+.|.+||+.+++.... ...+..+.. ...+++|+|+ +++++ +.|.+||+.+ ++.+..+..+. +
T Consensus 122 ~~~~~i~~~d~~~~~~~~~-----~~~~~~~~~~~~~~~s~dg~-l~~~~-----~~i~~~d~~~--~~~~~~~~~~~~~ 188 (349)
T 1jmx_B 122 VKPPRLEVFSTADGLEAKP-----VRTFPMPRQVYLMRAADDGS-LYVAG-----PDIYKMDVKT--GKYTVALPLRNWN 188 (349)
T ss_dssp ECCCEEEEEEGGGGGGBCC-----SEEEECCSSCCCEEECTTSC-EEEES-----SSEEEECTTT--CCEEEEECSTTCC
T ss_pred cCCCeEEEEECCCccccce-----eeeccCCCcccceeECCCCc-EEEcc-----CcEEEEeCCC--CceeccccccccC
Confidence 8999999987643221 111222221 1234899999 55543 3499999875 44444443221 0
Q ss_pred -----------------------CeEEEEEccCCCC---CC-CCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCC
Q 000054 2368 -----------------------GARSISVFDNDLG---SG-SVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGG 2420 (2548)
Q Consensus 2368 -----------------------~VtSLafsP~dlg---~g-s~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~ 2420 (2548)
....+.++++.-. .. ....++.....++.+++|++.. .+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------------ 254 (349)
T 1jmx_B 189 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD--LT------------ 254 (349)
T ss_dssp CTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE--CS------------
T ss_pred CccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccccc--CC------------
Confidence 2233444432100 00 0001222344556666666321 00
Q ss_pred CCccccccccCC-CCCCccCCCCCceEEEcccC-------CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2421 SSINTCAHADAQ-TGSGSKPGDQNGMLWYIPKA-------HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2421 s~~~~~~vafSp-dGk~v~s~D~sv~Iwdi~~g-------H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
.....+.++| +|+.+...++.+.+|+...+ ....+.+++|+|+|++|++++.++.|++||+.+++.+.++
T Consensus 255 --~~~~~~~~sp~dg~~l~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 255 --ELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp --SCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred --CcceeeEecCCCCCEEEEEcCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeee
Confidence 1122345666 66652222566666664321 2345678999999998888888999999999999999877
Q ss_pred c
Q 000054 2493 S 2493 (2548)
Q Consensus 2493 ~ 2493 (2548)
+
T Consensus 333 ~ 333 (349)
T 1jmx_B 333 K 333 (349)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.26 E-value=4.9e-11 Score=155.85 Aligned_cols=224 Identities=12% Similarity=0.066 Sum_probs=149.1
Q ss_pred EEEEEEcCCCCEEEEEEC---CCeEEEEEcCC--CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCE-EEEEeCCCcE
Q 000054 2222 TRAFSSHPLRPFFLVGSS---NTHIYLWEFGK--DKATATYGVLPAANVPPPYALASISALQFDHYGHR-FASAALDGTV 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~---DGsVrLWDl~t--g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~-LaSGS~DGtV 2295 (2548)
+..++|+|+ +++++++. +...+||.++. ......+.. ...+...+|+|+|+. +++.+.++.+
T Consensus 67 ~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~-----------~~~~~~~~~s~dg~~~~~~s~~~~~~ 134 (582)
T 3o4h_A 67 VLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEA-----------VKPMRILSGVDTGEAVVFTGATEDRV 134 (582)
T ss_dssp ECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTT-----------SCSBEEEEEEECSSCEEEEEECSSCE
T ss_pred cccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccccccC-----------CCCceeeeeCCCCCeEEEEecCCCCc
Confidence 467889999 77777765 55567766543 222223211 123446688888753 3333444445
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCC----CeEEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG----INVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~D----GtVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
.+||+++++...+ ...+. .-..++|||+.+++++ .+ +.|++||+.+ ++ ...+..|.+.+..
T Consensus 135 ~l~d~~~g~~~~l--------~~~~~-~~~~~spDG~~la~~~---~~~~~~~~i~~~d~~~--g~-~~~l~~~~~~~~~ 199 (582)
T 3o4h_A 135 ALYALDGGGLREL--------ARLPG-FGFVSDIRGDLIAGLG---FFGGGRVSLFTSNLSS--GG-LRVFDSGEGSFSS 199 (582)
T ss_dssp EEEEEETTEEEEE--------EEESS-CEEEEEEETTEEEEEE---EEETTEEEEEEEETTT--CC-CEEECCSSCEEEE
T ss_pred eEEEccCCcEEEe--------ecCCC-ceEEECCCCCEEEEEE---EcCCCCeEEEEEcCCC--CC-ceEeecCCCcccc
Confidence 5999988753221 11122 2235899999999765 34 7899999875 33 3467788899999
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCC--cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGG--DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYI 2449 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DG--tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi 2449 (2548)
++|+|+ |+.|+++..+| .|++|| ..+++.. .+
T Consensus 200 ~~~SpD-------G~~l~~~~~~~~~~i~~~d---~~~~~~~-~~----------------------------------- 233 (582)
T 3o4h_A 200 ASISPG-------MKVTAGLETAREARLVTVD---PRDGSVE-DL----------------------------------- 233 (582)
T ss_dssp EEECTT-------SCEEEEEECSSCEEEEEEC---TTTCCEE-EC-----------------------------------
T ss_pred ceECCC-------CCEEEEccCCCeeEEEEEc---CCCCcEE-Ec-----------------------------------
Confidence 999999 78999888899 899999 4555554 32
Q ss_pred ccCCCCCEEEEE--------EeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEE
Q 000054 2450 PKAHLGSVTRIS--------TVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQ 2521 (2548)
Q Consensus 2450 ~~gH~~~VtsLa--------fSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLa 2521 (2548)
.+|...+..++ |+|||.++++++.||++++|++ |+.+... . ..|.+++
T Consensus 234 -~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~-----------------~----~~v~~~~ 289 (582)
T 3o4h_A 234 -ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP-----------------Q----GNHGRVV 289 (582)
T ss_dssp -CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC-----------------S----SEEEEEE
T ss_pred -cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC-----------------C----CceEEEE
Confidence 33444444444 9999999999999999999999 6654311 1 2256778
Q ss_pred EcCCe--EEEEECCC---cEEEEECCC
Q 000054 2522 VVSRG--FLSCGGDG---SVKLIQLED 2543 (2548)
Q Consensus 2522 fSPdG--LaSGS~DG---tIrIWDL~s 2543 (2548)
|+ +| +++++.+. .+.+|++.+
T Consensus 290 ~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 290 LW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred ec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 99 77 66777764 366666654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-09 Score=132.71 Aligned_cols=239 Identities=13% Similarity=0.109 Sum_probs=145.4
Q ss_pred EEEEE----ECCCeEEEEEcC--CCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC----CcEEEEEcCC
Q 000054 2233 FFLVG----SSNTHIYLWEFG--KDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD----GTVCTWQLEV 2302 (2548)
Q Consensus 2233 ~LASG----S~DGsVrLWDl~--tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D----GtVrVWDl~t 2302 (2548)
++++| +.++.|.+|+++ +++....... +...+..++|+|+|++|++++.+ |.|.+|+++.
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~----------~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~ 84 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA----------EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDK 84 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE----------ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEET
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc----------cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeC
Confidence 44555 346789999875 4543322211 23667789999999999999886 8999999875
Q ss_pred C-cccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCc--ceeeec-----------cCCC
Q 000054 2303 G-GRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--RASITC-----------HEGG 2368 (2548)
Q Consensus 2303 g-k~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~--v~sl~g-----------Hs~~ 2368 (2548)
. ..... ......+......+..+++.+++++ ..++.|.+|++... +.. +..... +...
T Consensus 85 ~~g~~~~-----~~~~~~~~~~p~~~~~dg~~l~~~~--~~~~~v~~~~~~~~-g~~~~~~~~~~~~g~~~~~~~~~~~~ 156 (361)
T 3scy_A 85 EKGTLHL-----LNTQKTMGADPCYLTTNGKNIVTAN--YSGGSITVFPIGQD-GALLPASDVIEFKGSGPDKERQTMPH 156 (361)
T ss_dssp TTTEEEE-----EEEEECSSSCEEEEEECSSEEEEEE--TTTTEEEEEEBCTT-SCBCSCSEEEECCCCCSCTTTCSSCC
T ss_pred CCCcEEE-----eeEeccCCCCcEEEEECCCEEEEEE--CCCCEEEEEEeCCC-CcCcccceeEEccCCCCCccccCCCc
Confidence 3 11111 1112223333333333888888776 36899999998642 211 111111 2234
Q ss_pred eEEEEEccCCCCCCCCCCEE-EEEeCCCcEEEEeCCccccC----c-eeeeecCCCCCCCccccccccCCCCCCccCCCC
Q 000054 2369 ARSISVFDNDLGSGSVSPLI-VTGGKGGDVGIHDFRYIATG----K-TKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQ 2442 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lL-VSGS~DGtVrLWDLR~l~TG----k-~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~ 2442 (2548)
+.+++|+|+ ++++ +++..++.|.+|++.. ..+ + ....-
T Consensus 157 ~~~~~~spd-------g~~l~~~~~~~~~v~v~~~~~-~~~~~~~~~l~~~~---------------------------- 200 (361)
T 3scy_A 157 LHCVRITPD-------GKYLLADDLGTDQIHKFNINP-NANADNKEKFLTKG---------------------------- 200 (361)
T ss_dssp EEEEEECTT-------SSEEEEEETTTTEEEEEEECT-TCCTTTCCCCEEEE----------------------------
T ss_pred ceEEEECCC-------CCEEEEEeCCCCEEEEEEEcC-CCCcccccceeecc----------------------------
Confidence 688999998 6655 4555689999999542 121 1 10000
Q ss_pred CceEEEcccCCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCcEE--EEecccccccccccCcccCCCCceeecEEE
Q 000054 2443 NGMLWYIPKAHLGSVTRISTVPNTSLFLTGS-KDGDVKLWDAKAAQLV--YHWSKLHERHTFLQPSSRGFGGVVRAGVTD 2519 (2548)
Q Consensus 2443 sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS-~DGtIrIWDl~Tgell--~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vts 2519 (2548)
..-.....+...+..++|+|+|+++++++ .++.|.+||+.+++.. ..+. ....+. ....+
T Consensus 201 --~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~-----------~~~~~~----~~~~~ 263 (361)
T 3scy_A 201 --TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVA-----------ADTVNA----QGSGD 263 (361)
T ss_dssp --EEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEE-----------SCSSCC----CCEEE
T ss_pred --cccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEe-----------cCCCCC----CCccc
Confidence 00000122344678899999999888777 5899999999877653 2221 012222 12467
Q ss_pred EEEcCCe--EEEE-EC-CCcEEEEECC
Q 000054 2520 IQVVSRG--FLSC-GG-DGSVKLIQLE 2542 (2548)
Q Consensus 2520 LafSPdG--LaSG-S~-DGtIrIWDL~ 2542 (2548)
++|+|+| |+++ .. +++|.+|+++
T Consensus 264 i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 264 IHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp EEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred EEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 8999999 5444 44 5899999996
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=7.8e-09 Score=138.99 Aligned_cols=244 Identities=12% Similarity=0.076 Sum_probs=160.4
Q ss_pred EEEEEEEcCCCCEEEEEECCC-----eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCc-
Q 000054 2221 STRAFSSHPLRPFFLVGSSNT-----HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT- 2294 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LASGS~DG-----sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGt- 2294 (2548)
.+..++|+|||++||.+..++ .|++||+.+++....... ...+..++|+|||+.|+.++.|+.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~-----------~~~~~~~~wspDg~~l~~~~~~~~~ 194 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-----------RVKFSCMAWTHDGKGMFYNAYPQQD 194 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-----------EECSCCEEECTTSSEEEEEECCCCS
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCccccc-----------CcccceEEEEeCCCEEEEEEECCcc
Confidence 367899999999999765433 899999999987653211 023678999999999999988876
Q ss_pred ---------------EEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCC--CCeEEEEECCC--
Q 000054 2295 ---------------VCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSN--GINVVVWDTLA-- 2353 (2548)
Q Consensus 2295 ---------------VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~--DGtVrIWDl~t-- 2353 (2548)
|.+|++.+++..... ......+...+. .++|||+.|+.+...+. +..|.+||+..
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~----v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~ 270 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDIL----CAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQES 270 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEE----EECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred ccccccccccCCCCEEEEEECCCCcccceE----EeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccc
Confidence 999999876521110 001122333232 48999998887652111 57899999864
Q ss_pred ----CCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeC-C---CcEEEEeCCccccCc--eeeeecCCCCCCCc
Q 000054 2354 ----PPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGK-G---GDVGIHDFRYIATGK--TKKHKHSDRGGSSI 2423 (2548)
Q Consensus 2354 ----~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~-D---GtVrLWDLR~l~TGk--~l~tl~~~~~~s~~ 2423 (2548)
+ ......+..+...+... |+|+ +..|+..+. + +.|.+||+. ++. ..+.+
T Consensus 271 ~~~~~-~~~~~~l~~~~~~~~~~-~s~d-------g~~l~~~s~~~~~~~~l~~~d~~---~~~~~~~~~l--------- 329 (710)
T 2xdw_A 271 NGITG-ILKWVKLIDNFEGEYDY-VTNE-------GTVFTFKTNRHSPNYRLINIDFT---DPEESKWKVL--------- 329 (710)
T ss_dssp SSSCS-SCCCEEEECSSSSCEEE-EEEE-------TTEEEEEECTTCTTCEEEEEETT---SCCGGGCEEE---------
T ss_pred cccCC-ccceEEeeCCCCcEEEE-Eecc-------CCEEEEEECCCCCCCEEEEEeCC---CCCcccceec---------
Confidence 2 12455666677666653 6776 455554443 2 368999943 332 11121
Q ss_pred cccccccCCCCCCccCCCCCceEEEcccCCC--CCEEEEEEeCCCCEEEEEeCCCc--EEEEECCCCcEEEEeccccccc
Q 000054 2424 NTCAHADAQTGSGSKPGDQNGMLWYIPKAHL--GSVTRISTVPNTSLFLTGSKDGD--VKLWDAKAAQLVYHWSKLHERH 2499 (2548)
Q Consensus 2424 ~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~--~~VtsLafSPdG~~LaSGS~DGt--IrIWDl~Tgell~tL~~~Hs~h 2499 (2548)
..|. ..+..++|++++.++++...|+. |.+||+.+|+.+..+
T Consensus 330 ---------------------------~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l------- 375 (710)
T 2xdw_A 330 ---------------------------VPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIF------- 375 (710)
T ss_dssp ---------------------------ECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEE-------
T ss_pred ---------------------------cCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEec-------
Confidence 2232 36778999988889999999984 566787778877666
Q ss_pred ccccCcccCCCCceeecEEEEEEcCCe--EE-EEE---CCCcEEEEECCCCc
Q 000054 2500 TFLQPSSRGFGGVVRAGVTDIQVVSRG--FL-SCG---GDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2500 sfl~~tl~GH~~~V~a~VtsLafSPdG--La-SGS---~DGtIrIWDL~sg~ 2545 (2548)
..+. ..+..++++|++ ++ +.+ ..++|..||+.++.
T Consensus 376 -------~~~~----~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 376 -------PLEV----GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp -------CCCS----SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred -------CCCC----ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 2232 235567889988 33 333 35789999998765
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.09 E-value=4.5e-09 Score=130.45 Aligned_cols=213 Identities=11% Similarity=0.058 Sum_probs=133.1
Q ss_pred EEEEcCCCCEEEEEE----------CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC--
Q 000054 2224 AFSSHPLRPFFLVGS----------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-- 2291 (2548)
Q Consensus 2224 ~VsfSPdG~~LASGS----------~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-- 2291 (2548)
.++++|+|+++.++. .++.|.+||..+++.+..+.....+ ..+......++|+|+|++|+++..
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~----~~~g~~p~~i~~spdg~~l~v~n~~~ 129 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR----VQGLNYDGLFRQTTDGKFIVLQNASP 129 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB----CCBCCCGGGEEECTTSSEEEEEEESS
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc----cccCCCcceEEECCCCCEEEEECCCC
Confidence 789999999999876 3678999999999888887653211 112245678999999999998864
Q ss_pred CCcEEEEEcCCCccccc-ccCccc---eeccCCcccEEEEcCC-------------------------------------
Q 000054 2292 DGTVCTWQLEVGGRSNV-RPMESC---LCFSSHAMDVSYITSS------------------------------------- 2330 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i-~p~~s~---~t~~gH~~~V~afSpd------------------------------------- 2330 (2548)
+++|.+||+.+++.... .+.... ...........+++++
T Consensus 130 ~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (361)
T 2oiz_A 130 ATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPAL 209 (361)
T ss_dssp SEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEE
T ss_pred CCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecc
Confidence 68999999998764432 211000 0000000011112222
Q ss_pred -CCEEEEEeccCCCCeEEEEECCCCCCCcceeeec------c----CCCeEEEEEccCCCCCCCCCCEEEEEeC------
Q 000054 2331 -GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC------H----EGGARSISVFDNDLGSGSVSPLIVTGGK------ 2393 (2548)
Q Consensus 2331 -GslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g------H----s~~VtSLafsP~dlg~gs~g~lLVSGS~------ 2393 (2548)
+..++... .++.|.++|+..........+.. + ..+...++++|+ +..+.++..
T Consensus 210 ~g~~~~~~~---~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d-------g~~lyv~~~~~~~~~ 279 (361)
T 2oiz_A 210 DKDKAHFVS---YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA-------SGRMYVFMHPDGKEG 279 (361)
T ss_dssp CSSEEEEEB---TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT-------TTEEEEEEESSCCTT
T ss_pred cCCEEEEEe---CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC-------CCeEEEEEccCCCcc
Confidence 22333332 45667777765321111111110 0 111223677887 344444332
Q ss_pred -----CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCE
Q 000054 2394 -----GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSL 2468 (2548)
Q Consensus 2394 -----DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~ 2468 (2548)
.+.|.+|| ..+++.+..+ ..+. +.+++|+|+|++
T Consensus 280 ~~~~~~~~v~viD---~~t~~~v~~i------------------------------------~~~~--p~~ia~spdg~~ 318 (361)
T 2oiz_A 280 THKFPAAEIWVMD---TKTKQRVARI------------------------------------PGRD--ALSMTIDQQRNL 318 (361)
T ss_dssp CTTCCCSEEEEEE---TTTTEEEEEE------------------------------------ECTT--CCEEEEETTTTE
T ss_pred cccCCCceEEEEE---CCCCcEEEEE------------------------------------ecCC--eeEEEECCCCCE
Confidence 34799999 6667777665 3344 889999999999
Q ss_pred EEEEeCCCcEEEEECCCC--cEEEEe
Q 000054 2469 FLTGSKDGDVKLWDAKAA--QLVYHW 2492 (2548)
Q Consensus 2469 LaSGS~DGtIrIWDl~Tg--ell~tL 2492 (2548)
|++++. ++|.+||..++ +.+.++
T Consensus 319 l~v~n~-~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 319 MLTLDG-GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp EEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred EEEeCC-CeEEEEECCCCcceeeEEe
Confidence 999887 99999999999 988876
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.6e-08 Score=124.66 Aligned_cols=251 Identities=10% Similarity=0.060 Sum_probs=148.0
Q ss_pred EEEEEECC--CeEEEEEcC--CCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC-CCcccc
Q 000054 2233 FFLVGSSN--THIYLWEFG--KDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE-VGGRSN 2307 (2548)
Q Consensus 2233 ~LASGS~D--GsVrLWDl~--tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~-tgk~i~ 2307 (2548)
++++|+.. +.|.+|+++ +++.. .+.... ..+...+..++|+|+|++|++++.+ .|.+|++. +++...
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~-~~~~~~------~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~ 75 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCK-LIKRTE------IPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH 75 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEE-EEEEEE------CCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEE-EeeEEc------cCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE
Confidence 35556543 568887764 45432 221110 0012467889999999999999888 99999997 664321
Q ss_pred cccCccceeccCCcccEEEEcCCCCE--EEEEe------ccC----CCCeEEEEECCCCCCCcceeee----ccCCCeEE
Q 000054 2308 VRPMESCLCFSSHAMDVSYITSSGSV--IAAAG------HSS----NGINVVVWDTLAPPTSSRASIT----CHEGGARS 2371 (2548)
Q Consensus 2308 i~p~~s~~t~~gH~~~V~afSpdGsl--LATgG------~SS----~DGtVrIWDl~t~~~k~v~sl~----gHs~~VtS 2371 (2548)
... ....+.... .+++|+|+. ++++. ++. .++.+.+|++... ++....+. .+...+.+
T Consensus 76 ~~~----~~~~g~~~~-~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~-g~~~~~~~~~~~~~~~~~~~ 149 (365)
T 1jof_A 76 EAS----HPIGGHPRA-NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET-GKLEKNVQNYEYQENTGIHG 149 (365)
T ss_dssp EEE----EECCSSGGG-GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT-CCEEEEEEEEECCTTCCEEE
T ss_pred eeE----eecCCCCcc-EEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCC-CcCcceEeeEEeCCCCcceE
Confidence 110 001122111 248899984 33431 001 4789999999642 33333333 24568999
Q ss_pred EEEccCCCCCCCCCCEEEEEe-CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGG-KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP 2450 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS-~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~ 2450 (2548)
++|+|+ +++++++. .++.|++||+.. +++...... .. .
T Consensus 150 ~~~spd-------G~~l~~~~~~~~~v~~~~~~~--~g~~~~~~~-------------------------------~~-~ 188 (365)
T 1jof_A 150 MVFDPT-------ETYLYSADLTANKLWTHRKLA--SGEVELVGS-------------------------------VD-A 188 (365)
T ss_dssp EEECTT-------SSEEEEEETTTTEEEEEEECT--TSCEEEEEE-------------------------------EE-C
T ss_pred EEECCC-------CCEEEEEcCCCCEEEEEEECC--CCCEEEeee-------------------------------Ee-c
Confidence 999999 67777665 468999999431 444321110 00 0
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECC--CCcEEE---EecccccccccccCcccCCCCc--eeecEEEEE-
Q 000054 2451 KAHLGSVTRISTVPNTSLFLTGSK-DGDVKLWDAK--AAQLVY---HWSKLHERHTFLQPSSRGFGGV--VRAGVTDIQ- 2521 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~-DGtIrIWDl~--Tgell~---tL~~~Hs~hsfl~~tl~GH~~~--V~a~VtsLa- 2521 (2548)
..|...+..++|+|+|+++++++. ++.|.+|++. ++++.. .+... ...+.+|.+. -...+..++
T Consensus 189 ~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~~i~~ 261 (365)
T 1jof_A 189 PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI-------PPGIPDRDPETGKGLYRADVCA 261 (365)
T ss_dssp SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS-------CTTCCCBCTTTSSBSEEEEEEE
T ss_pred CCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcC-------CCCcCCcccccccccccccEEE
Confidence 124567889999999999988875 7899999865 566532 22100 0001233210 000256789
Q ss_pred EcCCe--EEEEEC-CC-----cEEEEECC-CCc
Q 000054 2522 VVSRG--FLSCGG-DG-----SVKLIQLE-DYQ 2545 (2548)
Q Consensus 2522 fSPdG--LaSGS~-DG-----tIrIWDL~-sg~ 2545 (2548)
|+|+| |+++.. ++ +|++|+++ ++.
T Consensus 262 ~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~ 294 (365)
T 1jof_A 262 LTFSGKYMFASSRANKFELQGYIAGFKLRDCGS 294 (365)
T ss_dssp ECTTSSEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred ECCCCCEEEEECCCCCCCCCCeEEEEEECCCCC
Confidence 99999 554432 23 89999996 443
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3.8e-09 Score=139.79 Aligned_cols=244 Identities=9% Similarity=0.050 Sum_probs=153.6
Q ss_pred EEEEEEcCCCCEEEEE--ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeE---------EEEEc--cCCCE-EE
Q 000054 2222 TRAFSSHPLRPFFLVG--SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASIS---------ALQFD--HYGHR-FA 2287 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASG--S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~Vt---------sVaFS--PdG~~-La 2287 (2548)
+..+++++++-+++++ +.++...||....+.....+.. |...+. ...|+ |||++ |+
T Consensus 26 ~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 26 PACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALP----------APWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp CEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSC----------TTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred cceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCC----------CCccccccccccCCccceeeeecCCCeEEE
Confidence 4777888887677776 5688999999754444444322 112333 45565 99998 77
Q ss_pred EEeC-CCcEEEEEcC--C-CcccccccCccceeccC-----CcccEE--EEcCCCCEEEEEeccCCC----------CeE
Q 000054 2288 SAAL-DGTVCTWQLE--V-GGRSNVRPMESCLCFSS-----HAMDVS--YITSSGSVIAAAGHSSNG----------INV 2346 (2548)
Q Consensus 2288 SGS~-DGtVrVWDl~--t-gk~i~i~p~~s~~t~~g-----H~~~V~--afSpdGslLATgG~SS~D----------GtV 2346 (2548)
.++. +..|.++++. . +.... +.. |...+. +|+|||+.|+++. .+ ..|
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~~~~---------l~~~~~~~~~~~~~~~~~spDg~~l~~~~---~~~~~~~~~~~~~~i 163 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAVPRP---------LTPVSAVGGGLRWADPVLLPERGEVWCMA---EEFTGEGPSDVRRFL 163 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCCCEE---------CSCCCCSTTCEEEEEEEEETTTTEEEEEE---EEECSSSTTCEEEEE
T ss_pred EEECCCCeEEEEcCCCCCCCCCEe---------ccCCccCCCCccccCcEECCCCCEEEEEE---ecccCCCCCCceeEE
Confidence 6554 4566666654 2 32111 222 344443 5999999998875 34 589
Q ss_pred EEEECCCCCC---Ccceeee-ccCCCeEEEEEccCCCCCCCCCCEEEEEeCC--------CcEEEEeCCccc-cCc--ee
Q 000054 2347 VVWDTLAPPT---SSRASIT-CHEGGARSISVFDNDLGSGSVSPLIVTGGKG--------GDVGIHDFRYIA-TGK--TK 2411 (2548)
Q Consensus 2347 rIWDl~t~~~---k~v~sl~-gHs~~VtSLafsP~dlg~gs~g~lLVSGS~D--------GtVrLWDLR~l~-TGk--~l 2411 (2548)
++||+..... .....+. .+...+..++|+|+ |+.|+.++.+ ..|++|| +. +++ ..
T Consensus 164 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpD-------G~~la~~~~~~~~~~~~~~~i~~~d---~~~~g~~~~~ 233 (662)
T 3azo_A 164 AAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPD-------GRQAVWLAWDHPRMPWEGTELKTAR---VTEDGRFADT 233 (662)
T ss_dssp EEEETTSTTTTCGGGSEESSCSCSSEECCCEECTT-------SSEEEEEEECTTCCTTTCEEEEEEE---ECTTSCEEEE
T ss_pred EEEECCCCccccCCceeEEEecCCCcccCceECCC-------CCEEEEEECCCCCCCCCCcEEEEEE---ECCCCccccc
Confidence 9999875110 2344555 56677888999999 7888877755 3799999 44 341 11
Q ss_pred eeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCC--cEEEEECCCCcEE
Q 000054 2412 KHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDG--DVKLWDAKAAQLV 2489 (2548)
Q Consensus 2412 ~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DG--tIrIWDl~Tgell 2489 (2548)
..+ ..+|...+..++|+|||+++++++.|| .|.+||+.+++..
T Consensus 234 ~~l-----------------------------------~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~ 278 (662)
T 3azo_A 234 RTL-----------------------------------LGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT 278 (662)
T ss_dssp EEE-----------------------------------EEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE
T ss_pred EEe-----------------------------------CCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee
Confidence 121 144677899999999999888888888 6667777677765
Q ss_pred EEecccccccccccCcccCCCCceee-cEEEEEEcCCe--EEEEECCCcEEEE--ECCCC
Q 000054 2490 YHWSKLHERHTFLQPSSRGFGGVVRA-GVTDIQVVSRG--FLSCGGDGSVKLI--QLEDY 2544 (2548)
Q Consensus 2490 ~tL~~~Hs~hsfl~~tl~GH~~~V~a-~VtsLafSPdG--LaSGS~DGtIrIW--DL~sg 2544 (2548)
.... .+.. .....+. .+..++|+|++ +++++. +++++| |++++
T Consensus 279 ~l~~-~~~~----------~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~ 326 (662)
T 3azo_A 279 QLCR-REEE----------FAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG 326 (662)
T ss_dssp ESSC-CSSB----------SSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT
T ss_pred eccc-cccc----------ccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC
Confidence 4221 1000 0011111 13456899988 667777 999999 55544
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.06 E-value=5.3e-09 Score=138.39 Aligned_cols=247 Identities=11% Similarity=0.049 Sum_probs=147.1
Q ss_pred cCCCCE-EEEEEC-CCeEEEEEcC--CCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC----------C
Q 000054 2228 HPLRPF-FLVGSS-NTHIYLWEFG--KDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD----------G 2293 (2548)
Q Consensus 2228 SPdG~~-LASGS~-DGsVrLWDl~--tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D----------G 2293 (2548)
+|||++ |+.++. +..|.+++.. .......+.... ...|...+.+++|+|||+.|++++.| .
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~-----~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~ 161 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS-----AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRR 161 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCC-----CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEE
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCc-----cCCCCccccCcEECCCCCEEEEEEecccCCCCCCcee
Confidence 499998 775543 4556666655 203333332111 11134678999999999999999877 5
Q ss_pred cEEEEEcCC------CcccccccCccceecc-CCcccEE--EEcCCCCEEEEEeccC-----CCCeEEEEECCCCCC---
Q 000054 2294 TVCTWQLEV------GGRSNVRPMESCLCFS-SHAMDVS--YITSSGSVIAAAGHSS-----NGINVVVWDTLAPPT--- 2356 (2548)
Q Consensus 2294 tVrVWDl~t------gk~i~i~p~~s~~t~~-gH~~~V~--afSpdGslLATgG~SS-----~DGtVrIWDl~t~~~--- 2356 (2548)
.|.+||+.+ +... .+. .+...+. .|+|||+.|+.++... ....|.+||+... +
T Consensus 162 ~i~~~~~~~~~~~~~~~~~---------~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~-g~~~ 231 (662)
T 3azo_A 162 FLAAVPLDGSAAADRSAVR---------ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTED-GRFA 231 (662)
T ss_dssp EEEEEETTSTTTTCGGGSE---------ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTT-SCEE
T ss_pred EEEEEECCCCccccCCcee---------EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCC-Cccc
Confidence 899999987 3211 122 2233332 4999999998775210 0147999999721 3
Q ss_pred CcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC
Q 000054 2357 SSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG 2436 (2548)
Q Consensus 2357 k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~ 2436 (2548)
+......+|...+..+.|+|+ ++++++++.+|..+||.+. ..+++...... .... .....
T Consensus 232 ~~~~l~~~~~~~~~~~~~spd-------g~l~~~~~~~~~~~l~~~~-~~~~~~~~l~~---~~~~--~~~p~------- 291 (662)
T 3azo_A 232 DTRTLLGGPEEAIAQAEWAPD-------GSLIVATDRTGWWNLHRVD-PATGAATQLCR---REEE--FAGPL------- 291 (662)
T ss_dssp EEEEEEEETTBCEEEEEECTT-------SCEEEEECTTSSCEEEEEC-TTTCCEEESSC---CSSB--SSCCC-------
T ss_pred ccEEeCCCCCceEcceEECCC-------CeEEEEECCCCCeEEEEEE-CCCCceeeccc---cccc--ccCcc-------
Confidence 233334456789999999999 6688888888844444422 34454432220 0000 00000
Q ss_pred ccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEE--ECCCCcEEEEecccccccccccCcccCCCCcee
Q 000054 2437 SKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLW--DAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVR 2514 (2548)
Q Consensus 2437 v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIW--Dl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~ 2514 (2548)
| .-.+..++|+|+++++++++. +.++|| |+.+++ +..+ ..|.+.+
T Consensus 292 ----------w------~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l--------------~~~~~~~- 338 (662)
T 3azo_A 292 ----------W------TPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDA--------------AGPWTEW- 338 (662)
T ss_dssp ----------C------STTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEEC--------------CSSCCEE-
T ss_pred ----------c------cccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEe--------------cCCCCeE-
Confidence 0 011446889999999999999 999999 655555 4444 3444333
Q ss_pred ecEEEE-EEcCCe--EEEEECCCc--EEEEECCCCc
Q 000054 2515 AGVTDI-QVVSRG--FLSCGGDGS--VKLIQLEDYQ 2545 (2548)
Q Consensus 2515 a~VtsL-afSPdG--LaSGS~DGt--IrIWDL~sg~ 2545 (2548)
..+ ++++++ +++++.+.. |.+||+.++.
T Consensus 339 ---~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 339 ---AATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp ---EEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred ---EEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 344 555666 446666654 4445555654
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.4e-09 Score=129.57 Aligned_cols=243 Identities=9% Similarity=-0.067 Sum_probs=147.3
Q ss_pred EEEEEcCCCCEEEEEECC---CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2223 RAFSSHPLRPFFLVGSSN---THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~D---GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
..++|+|+|++|+....+ ..|.+||..+++...... + +......+.|+|+|++|+.++.++.|.+||
T Consensus 39 ~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~---~-------~~~~~~~~~~spdg~~l~~~~~~~~l~~~d 108 (396)
T 3c5m_A 39 YQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE---G-------KGDNTFGGFISTDERAFFYVKNELNLMKVD 108 (396)
T ss_dssp TSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC---S-------SCBCTTTCEECTTSSEEEEEETTTEEEEEE
T ss_pred ecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec---C-------CCCccccceECCCCCEEEEEEcCCcEEEEE
Confidence 345688999998876443 468888988876433211 1 111223378999999999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccE---------------EEEcCCCCEEEEEec--cCCCCeEEEEECCCCCCCcceee
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDV---------------SYITSSGSVIAAAGH--SSNGINVVVWDTLAPPTSSRASI 2362 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V---------------~afSpdGslLATgG~--SS~DGtVrIWDl~t~~~k~v~sl 2362 (2548)
+.+++...+...... .......+ ..++|+++.++.+.. ...+..|.+||+.. ++. ..+
T Consensus 109 ~~~~~~~~~~~~~~~--~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~--g~~-~~~ 183 (396)
T 3c5m_A 109 LETLEEQVIYTVDEE--WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIET--GEL-EVI 183 (396)
T ss_dssp TTTCCEEEEEECCTT--EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTT--CCE-EEE
T ss_pred CCCCCcEEEEecccc--cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCC--CcE-Eee
Confidence 987753322110000 00000000 124677776554310 01567899999875 333 333
Q ss_pred eccCCCeEEEEEccCCCCCCCCCCEEEEEeCC------CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC
Q 000054 2363 TCHEGGARSISVFDNDLGSGSVSPLIVTGGKG------GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG 2436 (2548)
Q Consensus 2363 ~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~D------GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~ 2436 (2548)
..+...+..+.|+|.+ +..|+..+.+ ..|.+||+ ..++. ..+
T Consensus 184 ~~~~~~~~~~~~sp~d------g~~l~~~~~~~~~~~~~~l~~~d~---~~~~~-~~l---------------------- 231 (396)
T 3c5m_A 184 HQDTAWLGHPIYRPFD------DSTVGFCHEGPHDLVDARMWLVNE---DGSNV-RKI---------------------- 231 (396)
T ss_dssp EEESSCEEEEEEETTE------EEEEEEEECSCSSSCSCCCEEEET---TSCCC-EES----------------------
T ss_pred ccCCcccccceECCCC------CCEEEEEecCCCCCCCceEEEEEC---CCCce-eEe----------------------
Confidence 3567789999999932 5556655543 35777773 22221 111
Q ss_pred ccCCCCCceEEEcccCC-CCCEEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCcEEEEecccccccccccCcccCCC
Q 000054 2437 SKPGDQNGMLWYIPKAH-LGSVTRISTVPNTSLFLTGSKD-----GDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFG 2510 (2548)
Q Consensus 2437 v~s~D~sv~Iwdi~~gH-~~~VtsLafSPdG~~LaSGS~D-----GtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~ 2510 (2548)
.... ...+..++|+|+|++|+.++.+ +.|++||+.+++...... +.++
T Consensus 232 -------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~------------~~~~- 285 (396)
T 3c5m_A 232 -------------KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV------------MPPC- 285 (396)
T ss_dssp -------------SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE------------CCSE-
T ss_pred -------------eccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee------------CCCC-
Confidence 0111 2357789999999987777554 449999999887643220 1111
Q ss_pred CceeecEEEEEEcC-Ce--EEEEE----------------CCCcEEEEECCCCcc
Q 000054 2511 GVVRAGVTDIQVVS-RG--FLSCG----------------GDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2511 ~~V~a~VtsLafSP-dG--LaSGS----------------~DGtIrIWDL~sg~l 2546 (2548)
. +.|+| +| +++++ .++.|++||+.++..
T Consensus 286 -------~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 286 -------S-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp -------E-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred -------C-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 1 58999 98 55543 357899999987653
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.01 E-value=6.6e-08 Score=115.02 Aligned_cols=242 Identities=9% Similarity=0.026 Sum_probs=156.6
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
..+++|+|+|+ +++++..++.|..||..++ ...+.. +...+.+++++++|+.+++...++.|.+||.
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~----------~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMH----------PSHHQNGHCLNKQGHLIACSHGLRRLERQRE 97 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEES----------SCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEEC----------CCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence 57889999998 7888889999999999877 444432 2367899999999998887777899999999
Q ss_pred CCCcccccccCccceeccCCcccEEEEcCCCCEEEEEec-cC-------------CCCeEEEEECCCCCCCcceeeeccC
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGH-SS-------------NGINVVVWDTLAPPTSSRASITCHE 2366 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~-SS-------------~DGtVrIWDl~t~~~k~v~sl~gHs 2366 (2548)
.+++........... ....... .+++++|+++++... .+ ..+.|..+|.. ..+..+..+.
T Consensus 98 ~~g~~~~~~~~~~~~-~~~~~~~-i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~----g~~~~~~~~~ 171 (296)
T 3e5z_A 98 PGGEWESIADSFEGK-KLNSPND-VCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD----GTLSAPIRDR 171 (296)
T ss_dssp TTCCEEEEECEETTE-ECCCCCC-EEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT----SCEEEEECCC
T ss_pred CCCcEEEEeeccCCC-CCCCCCC-EEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC----CCEEEeecCC
Confidence 777532211000000 0001112 347899998887310 00 12355555543 2334445666
Q ss_pred CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceE
Q 000054 2367 GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGML 2446 (2548)
Q Consensus 2367 ~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~I 2446 (2548)
.....++|+|+ ++.+++.+.++.|.+||+. .+++..... ++
T Consensus 172 ~~~~gi~~s~d-------g~~lv~~~~~~~i~~~~~~--~~g~~~~~~------------------------------~~ 212 (296)
T 3e5z_A 172 VKPNGLAFLPS-------GNLLVSDTGDNATHRYCLN--ARGETEYQG------------------------------VH 212 (296)
T ss_dssp SSEEEEEECTT-------SCEEEEETTTTEEEEEEEC--SSSCEEEEE------------------------------EE
T ss_pred CCCccEEECCC-------CCEEEEeCCCCeEEEEEEC--CCCcCcCCC------------------------------eE
Confidence 77899999998 6777888888999999953 133320000 01
Q ss_pred EEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEE-cCC
Q 000054 2447 WYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQV-VSR 2525 (2548)
Q Consensus 2447 wdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLaf-SPd 2525 (2548)
+ ..+.+.+.+++++++|++.++. ++.|.+||.. ++.+..+ ..+.. +++++| +|+
T Consensus 213 ~---~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~--------------~~~~~-----~~~~~f~~~d 267 (296)
T 3e5z_A 213 F---TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRV--------------LTPQT-----TSNLCFGGPE 267 (296)
T ss_dssp E---CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEE--------------ECSSC-----CCEEEEESTT
T ss_pred e---eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEE--------------ECCCC-----ceeEEEECCC
Confidence 1 1234455679999999977776 8899999986 7777666 22222 355688 578
Q ss_pred e--EEEEECCCcEEEEECCCCcc
Q 000054 2526 G--FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2526 G--LaSGS~DGtIrIWDL~sg~l 2546 (2548)
+ |..++.++ +..+++.++.+
T Consensus 268 ~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 268 GRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp SCEEEEEETTE-EEEEECSCCBC
T ss_pred CCEEEEEcCCe-EEEEEcccccc
Confidence 7 66776654 44456655543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.8e-08 Score=115.73 Aligned_cols=236 Identities=11% Similarity=0.054 Sum_probs=153.6
Q ss_pred EEEEEEcCCCCEEE-EEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRPFFL-VGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LA-SGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
..+++++++|++++ +.+.++.|.+||..++... .+. ..+...+.+++++++|+.+++.. ++.|.+||.
T Consensus 26 p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~-~~~---------~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~ 94 (270)
T 1rwi_B 26 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT-VLP---------FNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAA 94 (270)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEECC-----E-ECC---------CCSCCSCCCEEECTTCCEEEEET-TTEEEEECT
T ss_pred ccceEECCCCCEEEEccCCCCcEEEecCCCcccc-eEe---------eCCcCCcceeEECCCCCEEEEcC-CCEEEEEeC
Confidence 47888899999777 5477899999987654322 111 01224678899999999666655 889999998
Q ss_pred CCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCC
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
........ . . ...... .+++++|+++++.. .++.|.+||... .............+.++++.++
T Consensus 95 ~~~~~~~~-~------~-~~~~~p~~i~~~~~g~l~v~~~---~~~~i~~~~~~~--~~~~~~~~~~~~~p~~i~~~~~- 160 (270)
T 1rwi_B 95 GSNNQTVL-P------F-DGLNYPEGLAVDTQGAVYVADR---GNNRVVKLAAGS--KTQTVLPFTGLNDPDGVAVDNS- 160 (270)
T ss_dssp TCSCCEEC-C------C-CSCSSEEEEEECTTCCEEEEEG---GGTEEEEECTTC--CSCEECCCCSCCSCCCEEECTT-
T ss_pred CCceEeee-e------c-CCcCCCcceEECCCCCEEEEEC---CCCEEEEEECCC--ceeEeeccccCCCceeEEEeCC-
Confidence 75432111 0 1 111222 24788998777653 578899997643 2222222223346788999887
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEE
Q 000054 2379 LGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVT 2458 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vt 2458 (2548)
+.++++...++.|.+||.. ........ ..+...+.
T Consensus 161 ------g~l~v~~~~~~~i~~~~~~---~~~~~~~~------------------------------------~~~~~~p~ 195 (270)
T 1rwi_B 161 ------GNVYVTDTDNNRVVKLEAE---SNNQVVLP------------------------------------FTDITAPW 195 (270)
T ss_dssp ------CCEEEEEGGGTEEEEECTT---TCCEEECC------------------------------------CSSCCSEE
T ss_pred ------CCEEEEECCCCEEEEEecC---CCceEeec------------------------------------ccCCCCce
Confidence 6677777778999999943 22221111 12235678
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcE
Q 000054 2459 RISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSV 2536 (2548)
Q Consensus 2459 sLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtI 2536 (2548)
+++++++|.++++...++.|.+||........ .. ..+. ..+.+++++++| +++...+++|
T Consensus 196 ~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~-------------~~~~----~~p~~i~~~~~g~l~v~~~~~~~v 257 (270)
T 1rwi_B 196 GIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP-------------FTGL----NTPLAVAVDSDRTVYVADRGNDRV 257 (270)
T ss_dssp EEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC-------------CCSC----SCEEEEEECTTCCEEEEEGGGTEE
T ss_pred EEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec-------------cCCC----CCceeEEECCCCCEEEEECCCCEE
Confidence 99999999888888788999999987654332 10 1111 235678999999 6788889999
Q ss_pred EEEECCCCc
Q 000054 2537 KLIQLEDYQ 2545 (2548)
Q Consensus 2537 rIWDL~sg~ 2545 (2548)
+++++....
T Consensus 258 ~~~~~~~~~ 266 (270)
T 1rwi_B 258 VKLTSLEHH 266 (270)
T ss_dssp EEECCCGGG
T ss_pred EEEcCCCcc
Confidence 999987654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.01 E-value=5e-09 Score=140.60 Aligned_cols=243 Identities=9% Similarity=-0.038 Sum_probs=152.4
Q ss_pred EEEEEEEcCCCCEEEE-----EECCCeEEEEEcCCCcee-EEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCc
Q 000054 2221 STRAFSSHPLRPFFLV-----GSSNTHIYLWEFGKDKAT-ATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT 2294 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LAS-----GS~DGsVrLWDl~tg~~l-~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGt 2294 (2548)
.+..++|+|||++||. |+.+..|++||+.+++.+ .. ... . .....++|+|||+.|+.++.|+.
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~--~~~--------~-~~~~~~~wspDg~~l~~~~~d~~ 190 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD--VIE--------G-GKYATPKWTPDSKGFYYEWLPTD 190 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC--CBS--------C-CTTCCCEECTTSSEEEEEECCCC
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc--ccC--------c-ccccceEEecCCCEEEEEEecCC
Confidence 3688999999999993 444578999999998754 11 000 0 11267999999999999998876
Q ss_pred -------------EEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccC-CCCeEEEEECCCCCCCc
Q 000054 2295 -------------VCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSS-NGINVVVWDTLAPPTSS 2358 (2548)
Q Consensus 2295 -------------VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS-~DGtVrIWDl~t~~~k~ 2358 (2548)
|++|++.++..... .......+...+. .++|||+.|+.+.... ....|.+||... + .
T Consensus 191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~----lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~--~-~ 263 (695)
T 2bkl_A 191 PSIKVDERPGYTTIRYHTLGTEPSKDT----VVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE--K-D 263 (695)
T ss_dssp TTSCGGGGGGGCEEEEEETTSCGGGCE----EEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC--S-S
T ss_pred CCCccccCCCCCEEEEEECCCCchhce----EEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC--C-c
Confidence 99999987752111 0111223333333 4899999888765210 012566665432 2 3
Q ss_pred ceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEe---CCCcEEEEeCCccccCce--eeeecCCCCCCCccccccccCCC
Q 000054 2359 RASITCHEGGARSISVFDNDLGSGSVSPLIVTGG---KGGDVGIHDFRYIATGKT--KKHKHSDRGGSSINTCAHADAQT 2433 (2548)
Q Consensus 2359 v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS---~DGtVrLWDLR~l~TGk~--l~tl~~~~~~s~~~~~~vafSpd 2433 (2548)
...+..+...+....+ +++ + +++++. .++.|.+||+. ++.. ...+
T Consensus 264 ~~~l~~~~~~~~~~~~-~~g------~-l~~~s~~~~~~~~l~~~d~~---~~~~~~~~~l------------------- 313 (695)
T 2bkl_A 264 FRLLVKGVGAKYEVHA-WKD------R-FYVLTDEGAPRQRVFEVDPA---KPARASWKEI------------------- 313 (695)
T ss_dssp CEEEEECSSCCEEEEE-ETT------E-EEEEECTTCTTCEEEEEBTT---BCSGGGCEEE-------------------
T ss_pred eEEeecCCCceEEEEe-cCC------c-EEEEECCCCCCCEEEEEeCC---CCCccCCeEE-------------------
Confidence 4556666667777766 552 4 555554 35889999943 3321 1111
Q ss_pred CCCccCCCCCceEEEcccCC-CCCEEEEEEeCCCCEEEEEeCCCcEEEEECC-CCcEEEEecccccccccccCcccCC-C
Q 000054 2434 GSGSKPGDQNGMLWYIPKAH-LGSVTRISTVPNTSLFLTGSKDGDVKLWDAK-AAQLVYHWSKLHERHTFLQPSSRGF-G 2510 (2548)
Q Consensus 2434 Gk~v~s~D~sv~Iwdi~~gH-~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~-Tgell~tL~~~Hs~hsfl~~tl~GH-~ 2510 (2548)
...+ ...|..++++ ++.++++...|+..++|.+. +++.+..+. .+ .
T Consensus 314 ----------------~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~--------------~~~~ 362 (695)
T 2bkl_A 314 ----------------VPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQ--------------LPGV 362 (695)
T ss_dssp ----------------ECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECC--------------CSSS
T ss_pred ----------------ecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEec--------------CCCC
Confidence 0222 4467788888 77889999999998888665 455555441 12 2
Q ss_pred CceeecEEEEEEcCCe--EE-EEE---CCCcEEEEECCCCcc
Q 000054 2511 GVVRAGVTDIQVVSRG--FL-SCG---GDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2511 ~~V~a~VtsLafSPdG--La-SGS---~DGtIrIWDL~sg~l 2546 (2548)
+ .+..++++|++ ++ +.+ .+++|++||+.++..
T Consensus 363 ~----~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 363 G----AASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp S----EECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred e----EEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 2 23344788887 43 332 357899999988654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.00 E-value=1e-08 Score=138.58 Aligned_cols=212 Identities=11% Similarity=0.092 Sum_probs=135.0
Q ss_pred EEEEEcCCCCEEEEEECC---------CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000054 2223 RAFSSHPLRPFFLVGSSN---------THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~D---------GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
..++|||||++|+.++.+ +.+.+||+.+++... + . .|.+.+...+|||||+.||.+. |+
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-l---~-------~~~~~~~~~~~SPdG~~la~~~-~~ 132 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-E---E-------RIPNNTQWVTWSPVGHKLAYVW-NN 132 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-S---S-------CCCTTEEEEEECSSTTCEEEEE-TT
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEE-c---c-------cCCCcceeeEECCCCCEEEEEE-CC
Confidence 357889999999988876 566799999987432 1 1 2346799999999999999884 78
Q ss_pred cEEEEEcCCCcccccccCc-cceeccCCcc-----------cEEEEcCCCCEEEEEeccCCC------------------
Q 000054 2294 TVCTWQLEVGGRSNVRPME-SCLCFSSHAM-----------DVSYITSSGSVIAAAGHSSNG------------------ 2343 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~-s~~t~~gH~~-----------~V~afSpdGslLATgG~SS~D------------------ 2343 (2548)
.|.+|++.++....+.... ....+.++.. .-.+|+|||+.||.+.. ++
T Consensus 133 ~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~--d~~~v~~~~~~~~~~~~~~~ 210 (740)
T 4a5s_A 133 DIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQF--NDTEVPLIEYSFYSDESLQY 210 (740)
T ss_dssp EEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEE--ECTTCCEEEEEECCSTTCSS
T ss_pred eEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEE--cccCCceEEEEeecCCCCCC
Confidence 9999999877543221100 0111222221 11469999999988641 11
Q ss_pred -----------------CeEEEEECCC---CCCCcceeee------ccCCCeEEEEEccCCCCCCCCCCEEEEEeC----
Q 000054 2344 -----------------INVVVWDTLA---PPTSSRASIT------CHEGGARSISVFDNDLGSGSVSPLIVTGGK---- 2393 (2548)
Q Consensus 2344 -----------------GtVrIWDl~t---~~~k~v~sl~------gHs~~VtSLafsP~dlg~gs~g~lLVSGS~---- 2393 (2548)
..|++||+.+ +.......+. +|...+..++|+|+ ++.++....
T Consensus 211 ~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspd-------g~~~~~~~~r~~~ 283 (740)
T 4a5s_A 211 PKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQ-------ERISLQWLRRIQN 283 (740)
T ss_dssp CEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEET-------TEEEEEEEESSTT
T ss_pred CcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCC-------CeEEEEEeCCCCC
Confidence 1578888865 3110222333 37788999999999 565555432
Q ss_pred CCcEEEEeCCccccCc----eeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEE-----EEEEeC
Q 000054 2394 GGDVGIHDFRYIATGK----TKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVT-----RISTVP 2464 (2548)
Q Consensus 2394 DGtVrLWDLR~l~TGk----~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vt-----sLafSP 2464 (2548)
+..|.+|| ..+++ +.... .+. ..+|.+.|. .++|+|
T Consensus 284 ~~~i~~~d---~~tg~~~~~~~~~~------------------------------~l~--~~~~~~~v~~~~~~~p~fsp 328 (740)
T 4a5s_A 284 YSVMDICD---YDESSGRWNCLVAR------------------------------QHI--EMSTTGWVGRFRPSEPHFTL 328 (740)
T ss_dssp EEEEEEEE---EETTTTEEEECGGG------------------------------CEE--EECSSSCSSSSSCCCCEECT
T ss_pred EEEEEEEE---CCCCccccceeEEE------------------------------Eee--eccCCceEccCcCCCceEcC
Confidence 34799999 55555 22111 000 022333333 678999
Q ss_pred CCCEEE-EEeC-CC--cEEEEECCCCcEEE
Q 000054 2465 NTSLFL-TGSK-DG--DVKLWDAKAAQLVY 2490 (2548)
Q Consensus 2465 dG~~La-SGS~-DG--tIrIWDl~Tgell~ 2490 (2548)
||+.++ ..+. +| .|.+||+.+++...
T Consensus 329 DG~~l~~~~s~~~G~~~l~~~~~~~~~~~~ 358 (740)
T 4a5s_A 329 DGNSFYKIISNEEGYRHICYFQIDKKDCTF 358 (740)
T ss_dssp TSSEEEEEEECTTSCEEEEEEETTCSSCEE
T ss_pred CCCEEEEEEEcCCCceEEEEEECCCCceEe
Confidence 999877 6664 44 68888988776543
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.5e-08 Score=119.18 Aligned_cols=220 Identities=9% Similarity=-0.006 Sum_probs=140.5
Q ss_pred EEEEEEcCCCCEEEEEECC---C--eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC----
Q 000054 2222 TRAFSSHPLRPFFLVGSSN---T--HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD---- 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~D---G--sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D---- 2292 (2548)
+..+.|+|||++|+.++.+ + .|.+||+.+++....... .. +..++|+|+|+.|+.++.+
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-----------~~-~~~~~wspdg~~l~~~~~~~~~~ 128 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-----------KN-IRSLEWNEDSRKLLIVGFKRRED 128 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-----------SE-EEEEEECTTSSEEEEEEECCCC-
T ss_pred CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-----------CC-ccceeECCCCCEEEEEEccCCCc
Confidence 3678999999999977653 3 477788887765544321 13 8999999999999888643
Q ss_pred -----------------------CcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCC------
Q 000054 2293 -----------------------GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG------ 2343 (2548)
Q Consensus 2293 -----------------------GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~D------ 2343 (2548)
..|.+||+.+++..... . .. ...-..|+|+| +++++. .+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l-----~-~~--~~~~~~~spdg-~~~~~~---~~~~~~~~ 196 (347)
T 2gop_A 129 EDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEF-----E-KP--RFSSGIWHRDK-IVVNVP---HREIIPQY 196 (347)
T ss_dssp --------CCCC---------CEEEEEEEETTTTEEEEEE-----E-EE--TTCEEEEETTE-EEEEEE---CCCSSCCS
T ss_pred CCcEEEcccceeecCcccccCccceEEEEECCCCeEEeee-----c-CC--CcccccCCCCe-EEEEEe---cccccccc
Confidence 57888999877531111 1 11 11223588999 777664 22
Q ss_pred C-eEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCC--------CcEEEEeCCccccCceeeee
Q 000054 2344 I-NVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKG--------GDVGIHDFRYIATGKTKKHK 2414 (2548)
Q Consensus 2344 G-tVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~D--------GtVrLWDLR~l~TGk~l~tl 2414 (2548)
. ...||.+.. ++ ...+..+ ..+..+ +|+ ++.|+.++.+ ..|.+|| +++....
T Consensus 197 ~~~~~l~~~d~--~~-~~~l~~~-~~~~~~--spd-------g~~l~~~~~~~~~~~~~~~~l~~~d-----~~~~~~l- 257 (347)
T 2gop_A 197 FKFWDIYIWED--GK-EEKMFEK-VSFYAV--DSD-------GERILLYGKPEKKYMSEHNKLYIYD-----GKEVMGI- 257 (347)
T ss_dssp SCCEEEEEEET--TE-EEEEEEE-ESEEEE--EEC-------SSCEEEEECCSSSCCCSSCEEEEEC-----SSCEEES-
T ss_pred cccccEEEeCC--Cc-eEEeccC-cceeeE--CCC-------CCEEEEEEccccCCccccceEEEEC-----CCceEec-
Confidence 2 344444432 33 3334444 555554 777 6677766644 3566665 2332221
Q ss_pred cCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE-EEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000054 2415 HSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR-ISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2415 ~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts-LafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
..+|...+.. +.|+ ++ ++++++.|+.+++| +.+++....+
T Consensus 258 -----------------------------------~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~- 298 (347)
T 2gop_A 258 -----------------------------------LDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA- 298 (347)
T ss_dssp -----------------------------------STTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE-
T ss_pred -----------------------------------cccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe-
Confidence 1446667776 8999 88 99999999999999 8766654322
Q ss_pred ccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcE-EEEECC
Q 000054 2494 KLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSV-KLIQLE 2542 (2548)
Q Consensus 2494 ~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtI-rIWDL~ 2542 (2548)
.+. ..|.+++|+| + +++++.++.. ++|.++
T Consensus 299 --------------~~~----~~v~~~~~s~-~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 299 --------------KGR----HWIMGFDVDE-IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp --------------CSS----SEEEEEEESS-SEEEEEECSSSCCEEEEES
T ss_pred --------------cCC----CeEEeeeeeC-cEEEEEcCCCChHHheEeC
Confidence 122 2356778999 8 6677777765 788775
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.94 E-value=5e-07 Score=108.80 Aligned_cols=242 Identities=14% Similarity=0.088 Sum_probs=150.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC----CcEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD----GTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D----GtVrV 2297 (2548)
..+++|+|+|++++++..++.|.+||..+++....... +...+.+++|+++|+.++++..+ +.|.+
T Consensus 47 ~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~----------~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~ 116 (333)
T 2dg1_A 47 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS----------HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA 116 (333)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC----------SSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred ccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC----------CCCCcceEEECCCCcEEEEeCCCCCCCceEEE
Confidence 47788899999888888999999999988775443311 22679999999999988877766 68999
Q ss_pred EEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEecc---CCCCeEEEEECCCCCCCcceeeeccCCCeEEE
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHS---SNGINVVVWDTLAPPTSSRASITCHEGGARSI 2372 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~S---S~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSL 2372 (2548)
||.+++....... ...+...+. .++++|+++++.... ...+.|..+|... .+ +..+..+...+..+
T Consensus 117 ~d~~~~~~~~~~~------~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~--~~-~~~~~~~~~~~~~i 187 (333)
T 2dg1_A 117 ATENGDNLQDIIE------DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF--RT-VTPIIQNISVANGI 187 (333)
T ss_dssp ECTTSCSCEEEEC------SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS--CC-EEEEEEEESSEEEE
T ss_pred EeCCCCEEEEEEc------cCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCC--CE-EEEeecCCCcccce
Confidence 9988764321110 011222333 488999888775300 0024566666542 22 23333344568899
Q ss_pred EEccCCCCCCCCCC-EEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc
Q 000054 2373 SVFDNDLGSGSVSP-LIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK 2451 (2548)
Q Consensus 2373 afsP~dlg~gs~g~-lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~ 2451 (2548)
+|+|+ +. +.++.+.++.|.+||++. .+..+..+. ..+.....
T Consensus 188 ~~~~d-------g~~l~v~~~~~~~i~~~d~~~--~g~~~~~~~----------------------------~~~~~~~~ 230 (333)
T 2dg1_A 188 ALSTD-------EKVLWVTETTANRLHRIALED--DGVTIQPFG----------------------------ATIPYYFT 230 (333)
T ss_dssp EECTT-------SSEEEEEEGGGTEEEEEEECT--TSSSEEEEE----------------------------EEEEEECC
T ss_pred EECCC-------CCEEEEEeCCCCeEEEEEecC--CCcCccccc----------------------------ceEEEecC
Confidence 99998 55 445556789999999531 122222110 00000012
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEE
Q 000054 2452 AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLS 2529 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaS 2529 (2548)
++ ..+..++++++|+++++...++.|.+||. +++.+..+.. +.. ..||. ..+.+++|+|++ |+.
T Consensus 231 ~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~-~~~-------~~g~~----~~~~~~~~~~dg~~L~v 296 (333)
T 2dg1_A 231 GH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI-PGR-------DEGHM----LRSTHPQFIPGTNQLII 296 (333)
T ss_dssp SS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC-TTG-------GGTCS----CBCCEEEECTTSCEEEE
T ss_pred CC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEc-CCC-------ccccc----cCcceEEECCCCCEEEE
Confidence 22 45678999999999888888899999998 5777666620 000 01221 124567899997 554
Q ss_pred EECC
Q 000054 2530 CGGD 2533 (2548)
Q Consensus 2530 GS~D 2533 (2548)
++.+
T Consensus 297 ~~~~ 300 (333)
T 2dg1_A 297 CSND 300 (333)
T ss_dssp EEEC
T ss_pred EeCc
Confidence 4444
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.2e-08 Score=120.22 Aligned_cols=215 Identities=9% Similarity=0.017 Sum_probs=135.1
Q ss_pred EEEcCCCceeEEEeccCCCCCCCCCCCCCeEE-----EEEccCCCEEEEEeC-CC--cEEEEEcCCCcccccccCcccee
Q 000054 2245 LWEFGKDKATATYGVLPAANVPPPYALASISA-----LQFDHYGHRFASAAL-DG--TVCTWQLEVGGRSNVRPMESCLC 2316 (2548)
Q Consensus 2245 LWDl~tg~~l~t~~~l~ghs~~~~~H~~~Vts-----VaFSPdG~~LaSGS~-DG--tVrVWDl~tgk~i~i~p~~s~~t 2316 (2548)
.+|..++..+..+.. |...+.. .+|+|||++|+.++. +| .|.+||+.+++....
T Consensus 14 ~~~~~~g~~~~~lt~----------~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l-------- 75 (388)
T 3pe7_A 14 YQDASTGAQVTRLTP----------PDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL-------- 75 (388)
T ss_dssp EECTTTCCEEEECSC----------TTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC--------
T ss_pred EecCCCCcceEEecC----------CcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe--------
Confidence 345566766666532 1233444 789999999999887 67 477888887753321
Q ss_pred ccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEE--ccCCCCCCCCCCEEEEE-
Q 000054 2317 FSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISV--FDNDLGSGSVSPLIVTG- 2391 (2548)
Q Consensus 2317 ~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf--sP~dlg~gs~g~lLVSG- 2391 (2548)
..++...+ ..|+|||+.|+.+. .++.|++||+.+ ++.......+...+....+ +++ +..++..
T Consensus 76 t~~~~~~~~~~~~spdg~~l~~~~---~~~~l~~~d~~~--g~~~~~~~~~~~~~~~~~~~~~~d-------g~~l~~~~ 143 (388)
T 3pe7_A 76 TEGRGDNTFGGFLSPDDDALFYVK---DGRNLMRVDLAT--LEENVVYQVPAEWVGYGTWVANSD-------CTKLVGIE 143 (388)
T ss_dssp CCSSCBCSSSCEECTTSSEEEEEE---TTTEEEEEETTT--CCEEEEEECCTTEEEEEEEEECTT-------SSEEEEEE
T ss_pred eeCCCCCccceEEcCCCCEEEEEe---CCCeEEEEECCC--CcceeeeechhhcccccceeECCC-------CCeecccc
Confidence 23333333 25999999999986 788999999986 4444445555555544443 555 5666532
Q ss_pred ---------------------eCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcc
Q 000054 2392 ---------------------GKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP 2450 (2548)
Q Consensus 2392 ---------------------S~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~ 2450 (2548)
+.++.|.+|| +.+++....
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d---~~~g~~~~l------------------------------------- 183 (388)
T 3pe7_A 144 IRREDWVPLTDWKKFHEFYFTKPCCRLMRVD---LKTGESTVI------------------------------------- 183 (388)
T ss_dssp EEGGGCCCCCSHHHHHHHGGGCCCEEEEEEE---TTTCCEEEE-------------------------------------
T ss_pred ccCcccccccccchhhhhhccCCcceEEEEE---CCCCceEEe-------------------------------------
Confidence 2335677777 334433222
Q ss_pred cCCCCCEEEEEEeC-CCCEEEEEeCC------CcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEc
Q 000054 2451 KAHLGSVTRISTVP-NTSLFLTGSKD------GDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVV 2523 (2548)
Q Consensus 2451 ~gH~~~VtsLafSP-dG~~LaSGS~D------GtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafS 2523 (2548)
..+...+..++|+| +|+.|+..+.+ ..|.++|..+++... + ..+... ..+..++|+
T Consensus 184 ~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l--------------~~~~~~--~~~~~~~~s 246 (388)
T 3pe7_A 184 LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRK-V--------------KTHAEG--ESCTHEFWV 246 (388)
T ss_dssp EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEE-S--------------CCCCTT--EEEEEEEEC
T ss_pred ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEE-e--------------eeCCCC--cccccceEC
Confidence 23456788999999 99998887763 378888887655432 2 112110 124566899
Q ss_pred CCe--EEEEEC--CC---cEEEEECCCCcc
Q 000054 2524 SRG--FLSCGG--DG---SVKLIQLEDYQH 2546 (2548)
Q Consensus 2524 PdG--LaSGS~--DG---tIrIWDL~sg~l 2546 (2548)
||| |+..+. ++ .|++||+.++..
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (388)
T 3pe7_A 247 PDGSALVYVSYLKGSPDRFIYSADPETLEN 276 (388)
T ss_dssp TTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred CCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence 999 654332 22 399999988753
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-06 Score=101.07 Aligned_cols=267 Identities=9% Similarity=0.014 Sum_probs=170.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++++++|.++++...++.|.+||.. ++. ..+.. + .+...+.+++++++|..+++...++.|..||..
T Consensus 17 ~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~~-~-------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 17 PYGITVSDKGKVWITQHKANMISCINLD-GKI-TEYPL-P-------TPDAKVMCLTISSDGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEEC-S-------STTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred ccceEECCCCCEEEEecCCCcEEEEcCC-CCe-EEecC-C-------cccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence 5888889999988877778999999988 543 33321 1 123679999999999988887778999999976
Q ss_pred CCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcc-eeeeccCCCeEEEEEccCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR-ASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v-~sl~gHs~~VtSLafsP~d 2378 (2548)
++.... ........+. ++.++|+++++.. .++.|..||. . ++.. .....+...+..+++.++
T Consensus 87 -g~~~~~-------~~~~~~~~~~~i~~~~~g~l~v~~~---~~~~i~~~d~-~--g~~~~~~~~~~~~~~~~i~~~~~- 151 (299)
T 2z2n_A 87 -GIIKEY-------TLPNPDSAPYGITEGPNGDIWFTEM---NGNRIGRITD-D--GKIREYELPNKGSYPSFITLGSD- 151 (299)
T ss_dssp -SCEEEE-------ECSSTTCCEEEEEECTTSCEEEEET---TTTEEEEECT-T--CCEEEEECSSTTCCEEEEEECTT-
T ss_pred -CcEEEE-------eCCCcCCCceeeEECCCCCEEEEec---CCceEEEECC-C--CCEEEecCCCCCCCCceEEEcCC-
Confidence 321111 0111222232 4778898887763 5789999998 3 2222 122234567899999887
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccC-CCCCceEEEc-------
Q 000054 2379 LGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKP-GDQNGMLWYI------- 2449 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s-~D~sv~Iwdi------- 2449 (2548)
+.+.++...++.|..|| . +++..... ... .......+++.++|.+ ++. .++.+..++.
T Consensus 152 ------g~l~v~~~~~~~i~~~~---~-~g~~~~~~-~~~--~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~ 218 (299)
T 2z2n_A 152 ------NALWFTENQNNAIGRIT---E-SGDITEFK-IPT--PASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEF 218 (299)
T ss_dssp ------SCEEEEETTTTEEEEEC---T-TCCEEEEE-CSS--TTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEE
T ss_pred ------CCEEEEeCCCCEEEEEc---C-CCcEEEee-CCC--CCCcceeEEECCCCCEEEEccCCceEEEECCCCcEEEE
Confidence 66777777788999999 4 44443321 111 1122345677777776 332 2445555553
Q ss_pred -ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-E
Q 000054 2450 -PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-F 2527 (2548)
Q Consensus 2450 -~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-L 2527 (2548)
...+...+.+++++++|+++++...++.|.+||. +++. ..+. +.++. ..+.++++ ++| +
T Consensus 219 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~------------~~~~~----~~~~~i~~-~~g~l 279 (299)
T 2z2n_A 219 KIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYP------------IQIKS----AEPHGICF-DGETI 279 (299)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEE------------CSSSS----CCEEEEEE-CSSCE
T ss_pred ECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEe------------CCCCC----CccceEEe-cCCCE
Confidence 1224467899999999998777767899999998 4543 3331 11222 23567788 888 6
Q ss_pred EEEECCCcEEEEECCCCc
Q 000054 2528 LSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2528 aSGS~DGtIrIWDL~sg~ 2545 (2548)
..+...+.|..++.+++.
T Consensus 280 ~v~~~~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 280 WFAMECDKIGKLTLIKDN 297 (299)
T ss_dssp EEEETTTEEEEEEEC---
T ss_pred EEEecCCcEEEEEcCccc
Confidence 555556778788877654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.89 E-value=9.1e-08 Score=115.57 Aligned_cols=221 Identities=10% Similarity=0.038 Sum_probs=139.9
Q ss_pred EEEEEEcCCCCEEEEEE---------CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000054 2222 TRAFSSHPLRPFFLVGS---------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS---------~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
+...++ +|++++... .++.|.+||..+++.. .+ ..+..++|+|||++|+.++.+
T Consensus 17 ~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l--------------~~~~~~~~SpDg~~la~~~~~ 79 (347)
T 2gop_A 17 LSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI--------------ENATMPRISPDGKKIAFMRAN 79 (347)
T ss_dssp EEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE--------------ESCEEEEECTTSSEEEEEEEE
T ss_pred cccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec--------------ccCCCeEECCCCCEEEEEEec
Confidence 455666 888887532 3677999999887643 22 347889999999999988754
Q ss_pred ---C--cEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEecc------------------------CCC
Q 000054 2293 ---G--TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHS------------------------SNG 2343 (2548)
Q Consensus 2293 ---G--tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~S------------------------S~D 2343 (2548)
+ .|.+|++.+++.... ...+...-..|+|+|+.|+.+... ...
T Consensus 80 ~~~~~~~l~~~~~~~g~~~~l--------~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 151 (347)
T 2gop_A 80 EEKKVSEIWVADLETLSSKKI--------LEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEK 151 (347)
T ss_dssp TTTTEEEEEEEETTTTEEEEE--------EEESEEEEEEECTTSSEEEEEEECCCC---------CCCC---------CE
T ss_pred cCCCcceEEEEECCCCceEEE--------EcCCCccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCcc
Confidence 3 377778776643221 111111112489999988887410 002
Q ss_pred CeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCC-------cEEEEeCCccccCceeeeecC
Q 000054 2344 INVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGG-------DVGIHDFRYIATGKTKKHKHS 2416 (2548)
Q Consensus 2344 GtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DG-------tVrLWDLR~l~TGk~l~tl~~ 2416 (2548)
..|.+||+.. ++.+..+.. . .+..+.|+|+ + +++++..++ ...+|.+. +++. ..+
T Consensus 152 ~~l~~~d~~~--~~~~~~l~~-~-~~~~~~~spd-------g-~~~~~~~~~~~~~~~~~~~l~~~d---~~~~-~~l-- 213 (347)
T 2gop_A 152 TTFWIFDTES--EEVIEEFEK-P-RFSSGIWHRD-------K-IVVNVPHREIIPQYFKFWDIYIWE---DGKE-EKM-- 213 (347)
T ss_dssp EEEEEEETTT--TEEEEEEEE-E-TTCEEEEETT-------E-EEEEEECCCSSCCSSCCEEEEEEE---TTEE-EEE--
T ss_pred ceEEEEECCC--CeEEeeecC-C-CcccccCCCC-------e-EEEEEecccccccccccccEEEeC---CCce-EEe--
Confidence 5788999875 333244444 3 7889999998 6 777776553 45666532 2222 222
Q ss_pred CCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCC--------CcEEEEECCCCcE
Q 000054 2417 DRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKD--------GDVKLWDAKAAQL 2488 (2548)
Q Consensus 2417 ~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~D--------GtIrIWDl~Tgel 2488 (2548)
..+ ..+..+ +|+|+.|+.++.+ ..|.+|| +++.
T Consensus 214 ----------------------------------~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~ 254 (347)
T 2gop_A 214 ----------------------------------FEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV 254 (347)
T ss_dssp ----------------------------------EEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE
T ss_pred ----------------------------------ccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce
Confidence 112 444444 9999988887754 3688888 5654
Q ss_pred EEEecccccccccccCcccCCCCceeecEEE-EEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2489 VYHWSKLHERHTFLQPSSRGFGGVVRAGVTD-IQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2489 l~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vts-LafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
.. + ..+|... +.+ +.|+ +| +++++.|+.+++| ++++
T Consensus 255 ~~-l-------------~~~~~~~----~~~~~~~s-dg~~~~~~~~~~~~l~-~~~g 292 (347)
T 2gop_A 255 MG-I-------------LDEVDRG----VGQAKIKD-GKVYFTLFEEGSVNLY-IWDG 292 (347)
T ss_dssp EE-S-------------STTCCSE----EEEEEEET-TEEEEEEEETTEEEEE-EESS
T ss_pred Ee-c-------------cccCCcc----cCCccEEc-CcEEEEEecCCcEEEE-EcCC
Confidence 33 2 1344433 333 6899 88 7788999999999 8744
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.87 E-value=7.9e-07 Score=111.29 Aligned_cols=268 Identities=11% Similarity=-0.004 Sum_probs=160.0
Q ss_pred CCCCEEEEEEC--CC---eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe----------CCC
Q 000054 2229 PLRPFFLVGSS--NT---HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA----------LDG 2293 (2548)
Q Consensus 2229 PdG~~LASGS~--DG---sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS----------~DG 2293 (2548)
|+++++.+... .+ +|.++|..+++.+..+.. + ... .++++|||++++++. .++
T Consensus 30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~--g--------~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~ 97 (373)
T 2mad_H 30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG--G--------FLP--NPVAAHSGSEFALASTSFSRIAKGKRTD 97 (373)
T ss_pred CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecC--C--------CCC--CeEECCCCCEEEEEeccccccccCCCCC
Confidence 55665555432 22 889999999988766532 1 122 899999999999886 367
Q ss_pred cEEEEEcCCCcccccccCc-cceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCccee-eeccCCCeEE
Q 000054 2294 TVCTWQLEVGGRSNVRPME-SCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRAS-ITCHEGGARS 2371 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~-s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~s-l~gHs~~VtS 2371 (2548)
.|.+||..+.+.....+.. ......+....-..++|||++++++... .++.|.++| .+ .+.+.. +.. .+ +
T Consensus 98 ~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~-~~~~v~viD-~t--~~~~~~~i~~-~~---~ 169 (373)
T 2mad_H 98 YVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA-AGPAVGLVV-QG--GSSDDQLLSS-PT---C 169 (373)
T ss_pred eEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC-CCCeEEEEE-CC--CCEEeEEcCC-Cc---e
Confidence 8999999876543322111 0000001111223589999999987511 257899999 76 555555 432 11 2
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCC--CCCCccccccccCCCCCC--ccCCCCCceEE
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDR--GGSSINTCAHADAQTGSG--SKPGDQNGMLW 2447 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~--~~s~~~~~~vafSpdGk~--v~s~D~sv~Iw 2447 (2548)
+.+.|.. ...+++.+.||.+.++| . +++......... ...........+.+++.. .....+.+.+.
T Consensus 170 ~~~~~~~------~~~~~~~~~dg~~~~vd---~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vi 239 (373)
T 2mad_H 170 YHIHPGA------PSTFYLLCAQGGLAKTD---H-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQA 239 (373)
T ss_pred EEEEeCC------CceEEEEcCCCCEEEEE---C-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEE
Confidence 4445553 45677788899999999 4 555542221000 011111111222333221 22233344444
Q ss_pred EcccC--------------------CCCCEEEEEEeCCCCEEEEEeC----------CCcEEEEECCCCcEEEEeccccc
Q 000054 2448 YIPKA--------------------HLGSVTRISTVPNTSLFLTGSK----------DGDVKLWDAKAAQLVYHWSKLHE 2497 (2548)
Q Consensus 2448 di~~g--------------------H~~~VtsLafSPdG~~LaSGS~----------DGtIrIWDl~Tgell~tL~~~Hs 2497 (2548)
|+... .......++++|+++.++.+.. ++.|.+.|..+++.+.+++
T Consensus 240 d~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~---- 315 (373)
T 2mad_H 240 DISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS---- 315 (373)
T ss_pred eccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE----
Confidence 43211 0122344788999888777653 3589999999999998883
Q ss_pred ccccccCcccCCCCceeecEEEEEEcCCe---EEEEE-CCCcEEEEECCCCc
Q 000054 2498 RHTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCG-GDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2498 ~hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS-~DGtIrIWDL~sg~ 2545 (2548)
-++ ....++|+||| ++++. .+++|.++|+.++.
T Consensus 316 ---------~g~------~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 316 ---------LGH------DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred ---------CCC------CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 111 13567999998 55655 68999999998864
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.7e-08 Score=121.62 Aligned_cols=192 Identities=8% Similarity=-0.052 Sum_probs=121.4
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEE-------------------EEEccCCCE
Q 000054 2225 FSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISA-------------------LQFDHYGHR 2285 (2548)
Q Consensus 2225 VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~Vts-------------------VaFSPdG~~ 2285 (2548)
+.|+|+|++|+.++.++.|++||+.+++......... +.... +.|+|+++.
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~----------~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~ 155 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDE----------EWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW 155 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCT----------TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEeccc----------ccCCCCCEEEeccCCccccccccccccCCCCcc
Confidence 5688999999999999999999999887655443211 11111 356777776
Q ss_pred EEEE-----eCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcC-CCCEEEEEeccCCC----CeEEEEECCC
Q 000054 2286 FASA-----ALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITS-SGSVIAAAGHSSNG----INVVVWDTLA 2353 (2548)
Q Consensus 2286 LaSG-----S~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSp-dGslLATgG~SS~D----GtVrIWDl~t 2353 (2548)
++.+ ..+..|.+||+.+++...+ ..+...+. .|+| +++.++.+... .. ..|.+||+..
T Consensus 156 ~~~~~~~~~~~~~~l~~~d~~~g~~~~~---------~~~~~~~~~~~~sp~dg~~l~~~~~~-~~~~~~~~l~~~d~~~ 225 (396)
T 3c5m_A 156 EKFAEFYHTNPTCRLIKVDIETGELEVI---------HQDTAWLGHPIYRPFDDSTVGFCHEG-PHDLVDARMWLVNEDG 225 (396)
T ss_dssp HHHHHHHHTCCCEEEEEEETTTCCEEEE---------EEESSCEEEEEEETTEEEEEEEEECS-CSSSCSCCCEEEETTS
T ss_pred eeeeeeccCCCcceEEEEECCCCcEEee---------ccCCcccccceECCCCCCEEEEEecC-CCCCCCceEEEEECCC
Confidence 6654 3567899999987753221 12223333 4888 78877765411 12 4688888864
Q ss_pred CCCCcceeeeccC--CCeEEEEEccCCCCCCCCCCEEEEEeCC-----CcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000054 2354 PPTSSRASITCHE--GGARSISVFDNDLGSGSVSPLIVTGGKG-----GDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2354 ~~~k~v~sl~gHs--~~VtSLafsP~dlg~gs~g~lLVSGS~D-----GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
.+ ...+..+. ..+..+.|+|+ ++.|+.++.+ +.|++||+ .+++.....
T Consensus 226 --~~-~~~l~~~~~~~~~~~~~~spd-------g~~l~~~~~~~~~~~~~l~~~d~---~~g~~~~l~------------ 280 (396)
T 3c5m_A 226 --SN-VRKIKEHAEGESCTHEFWIPD-------GSAMAYVSYFKGQTDRVIYKANP---ETLENEEVM------------ 280 (396)
T ss_dssp --CC-CEESSCCCTTEEEEEEEECTT-------SSCEEEEEEETTTCCEEEEEECT---TTCCEEEEE------------
T ss_pred --Cc-eeEeeccCCCccccceEECCC-------CCEEEEEecCCCCccceEEEEEC---CCCCeEEee------------
Confidence 22 22232232 35788999998 6666655443 44999994 444432221
Q ss_pred ccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeC-CCCEEEEEe----------------CCCcEEEEECCCCcE
Q 000054 2427 AHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVP-NTSLFLTGS----------------KDGDVKLWDAKAAQL 2488 (2548)
Q Consensus 2427 ~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSP-dG~~LaSGS----------------~DGtIrIWDl~Tgel 2488 (2548)
. .. ... +.|+| +|+++++++ .++.|++||+.+++.
T Consensus 281 ------------------------~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 281 ------------------------V-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp ------------------------E-CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred ------------------------e-CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 0 01 122 78999 999888765 347899999988764
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.8e-07 Score=110.29 Aligned_cols=196 Identities=11% Similarity=0.113 Sum_probs=135.0
Q ss_pred EEEEEE-cCCCCEEEEEEC-CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSS-HPLRPFFLVGSS-NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~Vsf-SPdG~~LASGS~-DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
...+++ .+++.++++... ++.|++|| .+++.+..+.. .+...+.+++++++|+.+++...++.|.+||
T Consensus 79 p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~---------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 148 (286)
T 1q7f_A 79 PNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGA---------TILQHPRGVTVDNKGRIIVVECKVMRVIIFD 148 (286)
T ss_dssp EEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECT---------TTCSCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred ceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecC---------ccCCCceEEEEeCCCCEEEEECCCCEEEEEc
Confidence 367777 477777776643 89999999 56666666532 1235689999999999888888889999999
Q ss_pred cCCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc--CCCeEEEEEc
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH--EGGARSISVF 2375 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH--s~~VtSLafs 2375 (2548)
.. ++..... ...++...+ .+++++|+++++.. .++.|++||.. ++.+..+..+ ...+..++++
T Consensus 149 ~~-g~~~~~~------~~~~~~~~p~~i~~~~~g~l~v~~~---~~~~i~~~~~~---g~~~~~~~~~g~~~~p~~i~~d 215 (286)
T 1q7f_A 149 QN-GNVLHKF------GCSKHLEFPNGVVVNDKQEIFISDN---RAHCVKVFNYE---GQYLRQIGGEGITNYPIGVGIN 215 (286)
T ss_dssp TT-SCEEEEE------ECTTTCSSEEEEEECSSSEEEEEEG---GGTEEEEEETT---CCEEEEESCTTTSCSEEEEEEC
T ss_pred CC-CCEEEEe------CCCCccCCcEEEEECCCCCEEEEEC---CCCEEEEEcCC---CCEEEEEccCCccCCCcEEEEC
Confidence 65 3221110 011222222 35888998777653 68899999974 3455555433 3678999999
Q ss_pred cCCCCCCCCCCEEEEEeCCC-cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000054 2376 DNDLGSGSVSPLIVTGGKGG-DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DG-tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
++ +.++++...++ .|.+||. .++.+..+. . ....
T Consensus 216 ~~-------G~l~v~~~~~~~~i~~~~~----~g~~~~~~~---------------------------------~-~~~~ 250 (286)
T 1q7f_A 216 SN-------GEILIADNHNNFNLTIFTQ----DGQLISALE---------------------------------S-KVKH 250 (286)
T ss_dssp TT-------CCEEEEECSSSCEEEEECT----TSCEEEEEE---------------------------------E-SSCC
T ss_pred CC-------CCEEEEeCCCCEEEEEECC----CCCEEEEEc---------------------------------c-cCCC
Confidence 88 67888888776 9999993 344444430 0 1122
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 000054 2455 GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAA 2486 (2548)
Q Consensus 2455 ~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tg 2486 (2548)
..+.+++++|+|+++++ +.|+.|++|+....
T Consensus 251 ~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 251 AQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp SCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 35789999999988777 67999999998653
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-07 Score=128.48 Aligned_cols=246 Identities=7% Similarity=-0.038 Sum_probs=152.9
Q ss_pred EEEEEEEcCCCCEEEEEECC-----CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCc-
Q 000054 2221 STRAFSSHPLRPFFLVGSSN-----THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT- 2294 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LASGS~D-----GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGt- 2294 (2548)
.+..++|+|||++||.++.+ ..|++||+.+++.+.... . ...+..++|+|| +.|+.++.|+.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~---------~~~~~~~~wspD-~~l~~~~~~~~~ 231 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--K---------WVKFSGLAWLGN-DALLYSRFAEPK 231 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--E---------EEESCCCEESTT-SEEEEEECCCC-
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--C---------CceeccEEEECC-CEEEEEEecCcc
Confidence 46889999999999976543 469999999998754311 0 012357899999 99998887664
Q ss_pred -------------EEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccC--CCCeEEEEECCCCCCC
Q 000054 2295 -------------VCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSS--NGINVVVWDTLAPPTS 2357 (2548)
Q Consensus 2295 -------------VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS--~DGtVrIWDl~t~~~k 2357 (2548)
|.+|++.++...... ......+...+. .++|||+.|+...... .+..|.+||+..+..+
T Consensus 232 ~~~~~~~~~~~~~v~~~~lgt~~~~~~l----v~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 307 (741)
T 1yr2_A 232 EGQAFQALNYNQTVWLHRLGTPQSADQP----VFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIG 307 (741)
T ss_dssp -------CCCCCEEEEEETTSCGGGCEE----EECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEEC
T ss_pred cccccccCCCCCEEEEEECCCCchhCEE----EeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCc
Confidence 888998776421110 111122222233 4899999888765211 1348999998753113
Q ss_pred cceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeC----CCcEEEEeCCccccC-ceeeeecCCCCCCCccccccccCC
Q 000054 2358 SRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGK----GGDVGIHDFRYIATG-KTKKHKHSDRGGSSINTCAHADAQ 2432 (2548)
Q Consensus 2358 ~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~----DGtVrLWDLR~l~TG-k~l~tl~~~~~~s~~~~~~vafSp 2432 (2548)
+...+..+...+.... +|+ +..|+..+. ++.|.+||+. ++ ...+.+
T Consensus 308 ~~~~l~~~~~~~~~~~-~~d-------g~~l~~~s~~~~~~~~l~~~d~~---~~~~~~~~l------------------ 358 (741)
T 1yr2_A 308 PVTALIPDLKAQWDFV-DGV-------GDQLWFVSGDGAPLKKIVRVDLS---GSTPRFDTV------------------ 358 (741)
T ss_dssp CCEEEECSSSSCEEEE-EEE-------TTEEEEEECTTCTTCEEEEEECS---SSSCEEEEE------------------
T ss_pred ccEEecCCCCceEEEE-ecc-------CCEEEEEECCCCCCCEEEEEeCC---CCccccEEE------------------
Confidence 1455556665665554 365 556666654 3458999943 32 122221
Q ss_pred CCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC-CCcEEEEecccccccccccCcccCCCC
Q 000054 2433 TGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK-AAQLVYHWSKLHERHTFLQPSSRGFGG 2511 (2548)
Q Consensus 2433 dGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~-Tgell~tL~~~Hs~hsfl~~tl~GH~~ 2511 (2548)
...+...+..++++ ++.++++...||..+||.+. +++.+..+. +. +.
T Consensus 359 -----------------~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~------------~~-~~- 406 (741)
T 1yr2_A 359 -----------------VPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVS------------LP-GI- 406 (741)
T ss_dssp -----------------ECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECB------------CS-SS-
T ss_pred -----------------ecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeecc------------CC-CC-
Confidence 13344456677887 66788888999988777654 455555441 11 11
Q ss_pred ceeecEEEEEEcCCe--EE-EE---ECCCcEEEEECCCCcc
Q 000054 2512 VVRAGVTDIQVVSRG--FL-SC---GGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2512 ~V~a~VtsLafSPdG--La-SG---S~DGtIrIWDL~sg~l 2546 (2548)
..|..++++|++ ++ +. ...++|+.||+.++..
T Consensus 407 ---~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 407 ---GSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp ---CEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred ---eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 235567888987 43 32 2458999999987653
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.9e-07 Score=110.39 Aligned_cols=190 Identities=9% Similarity=0.014 Sum_probs=136.9
Q ss_pred CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccc
Q 000054 2230 LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVR 2309 (2548)
Q Consensus 2230 dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~ 2309 (2548)
.+++|++++.|+.|++||..+|+.+.++.... ...+.++.++|+|+.++ +.++.|..||. +++.+..
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~---------~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~- 70 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK---------GWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWN- 70 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCT---------TCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEE-
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc---------cCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEE-
Confidence 35789999999999999999999988875411 03578899999999888 45788999998 6654321
Q ss_pred cCccceeccCC-cccEE--EEcCCCCEEEEEeccCC-CCeEEEEECCCCCCCcceeeec------cCCCeEEEEEccCCC
Q 000054 2310 PMESCLCFSSH-AMDVS--YITSSGSVIAAAGHSSN-GINVVVWDTLAPPTSSRASITC------HEGGARSISVFDNDL 2379 (2548)
Q Consensus 2310 p~~s~~t~~gH-~~~V~--afSpdGslLATgG~SS~-DGtVrIWDl~t~~~k~v~sl~g------Hs~~VtSLafsP~dl 2379 (2548)
+..+ ...+. .+.++|+++++.+ . ++.|..+|.. ++.+..+.. +......+.+.++
T Consensus 71 -------~~~~~~~~~~~~~~~~dG~~lv~~~---~~~~~v~~vd~~---Gk~l~~~~~~~~~~~~~~~~~~v~~~~~-- 135 (276)
T 3no2_A 71 -------IAAPAGCEMQTARILPDGNALVAWC---GHPSTILEVNMK---GEVLSKTEFETGIERPHAQFRQINKNKK-- 135 (276)
T ss_dssp -------EECCTTCEEEEEEECTTSCEEEEEE---STTEEEEEECTT---SCEEEEEEECCSCSSGGGSCSCCEECTT--
T ss_pred -------EcCCCCccccccEECCCCCEEEEec---CCCCEEEEEeCC---CCEEEEEeccCCCCcccccccCceECCC--
Confidence 1111 12232 3788999999875 4 6777777753 555444431 1123344555665
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR 2459 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts 2459 (2548)
++++++...++.|..|| .. |+.+..+ ..+ ..+.+
T Consensus 136 -----G~~lv~~~~~~~v~~~d---~~-G~~~w~~------------------------------------~~~-~~~~~ 169 (276)
T 3no2_A 136 -----GNYLVPLFATSEVREIA---PN-GQLLNSV------------------------------------KLS-GTPFS 169 (276)
T ss_dssp -----SCEEEEETTTTEEEEEC---TT-SCEEEEE------------------------------------ECS-SCCCE
T ss_pred -----CCEEEEecCCCEEEEEC---CC-CCEEEEE------------------------------------ECC-CCccc
Confidence 78999999999999999 44 7766554 111 23446
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000054 2460 ISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2460 LafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
+...++|+++++++.++.|..+|..+|+.+.++.
T Consensus 170 ~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 170 SAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp EEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred eeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 7788999999999988899999999999999883
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.4e-07 Score=112.76 Aligned_cols=211 Identities=13% Similarity=0.120 Sum_probs=141.5
Q ss_pred CCCeEEEEEccCCCEEEEEeCC------------------------CcEEEEEcCCCcccccccCccceeccCCcccE--
Q 000054 2271 LASISALQFDHYGHRFASAALD------------------------GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDV-- 2324 (2548)
Q Consensus 2271 ~~~VtsVaFSPdG~~LaSGS~D------------------------GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V-- 2324 (2548)
.+.+.+|+++++|+.+++...+ ++|.+||..+++..... -.++....
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-------~~~~~~~p~g 95 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS-------GKNLFYLPHG 95 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE-------CTTTCSSEEE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc-------CCCccCCceE
Confidence 4789999999999999888877 47999999877533211 11222222
Q ss_pred EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee---------eccCCCeEEEEEccCCCCCCCCCCEEEEEe-CC
Q 000054 2325 SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI---------TCHEGGARSISVFDNDLGSGSVSPLIVTGG-KG 2394 (2548)
Q Consensus 2325 ~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl---------~gHs~~VtSLafsP~dlg~gs~g~lLVSGS-~D 2394 (2548)
.+++++|+++++.. .++.|++||.... ...+..+ .++......++++|++ +.++++.+ .+
T Consensus 96 ia~d~~g~l~v~d~---~~~~v~~~~~~g~-~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~------g~lyv~d~~~~ 165 (329)
T 3fvz_A 96 LSIDTDGNYWVTDV---ALHQVFKLDPHSK-EGPLLILGRSMQPGSDQNHFCQPTDVAVEPST------GAVFVSDGYCN 165 (329)
T ss_dssp EEECTTSCEEEEET---TTTEEEEECTTCS-SCCSEEESBTTBCCCSTTCCSSEEEEEECTTT------CCEEEEECSSC
T ss_pred EEECCCCCEEEEEC---CCCEEEEEeCCCC-eEEEEEecccCCCCCCccccCCCcEEEEeCCC------CeEEEEeCCCC
Confidence 25889999777753 7899999998531 1144444 2445578999999943 77888886 79
Q ss_pred CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCC-CCEEEEEe
Q 000054 2395 GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPN-TSLFLTGS 2473 (2548)
Q Consensus 2395 GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPd-G~~LaSGS 2473 (2548)
+.|++||. .++.+..+........ ...++-.....++++|+ +.++++..
T Consensus 166 ~~I~~~~~----~g~~~~~~~~~g~~~~--------------------------~~~~~~~~p~gia~d~~~g~l~v~d~ 215 (329)
T 3fvz_A 166 SRIVQFSP----SGKFVTQWGEESSGSS--------------------------PRPGQFSVPHSLALVPHLDQLCVADR 215 (329)
T ss_dssp CEEEEECT----TSCEEEEECEECCSSS--------------------------CCTTEESCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEcC----CCCEEEEeccCCCCCC--------------------------CCCcccCCCcEEEEECCCCEEEEEEC
Confidence 99999993 3555554410000000 00123346789999998 78888888
Q ss_pred CCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEE-------ECCCcEEEEECCCC
Q 000054 2474 KDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSC-------GGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2474 ~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSG-------S~DGtIrIWDL~sg 2544 (2548)
.++.|++||..+|+.+.++. ..+++. .+..++++| + +++. ..+.+|++|++.++
T Consensus 216 ~~~~I~~~~~~~G~~~~~~~------------~~~~~~----~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g 278 (329)
T 3fvz_A 216 ENGRIQCFKTDTKEFVREIK------------HASFGR----NVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSG 278 (329)
T ss_dssp TTTEEEEEETTTCCEEEEEC------------CTTTTT----CEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTC
T ss_pred CCCEEEEEECCCCcEEEEEe------------ccccCC----CcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCC
Confidence 89999999999899988772 122332 245668888 4 2232 33458999998776
Q ss_pred c
Q 000054 2545 Q 2545 (2548)
Q Consensus 2545 ~ 2545 (2548)
.
T Consensus 279 ~ 279 (329)
T 3fvz_A 279 E 279 (329)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.80 E-value=8.6e-08 Score=115.47 Aligned_cols=238 Identities=11% Similarity=0.064 Sum_probs=148.4
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
.++.|++++..++..+.++.++.| .++....+.. +...+.+++|+++|+.++++..++.|.+||.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----------~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~ 75 (333)
T 2dg1_A 9 PTLFYSGKSNSAVPIISESELQTI---TAEPWLEISK----------KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPET 75 (333)
T ss_dssp CBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEES----------SCCCEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred ceeeecCCccceeEEeecccCccc---ccceeEEEec----------cCccccCcEECCCCCEEEEECCCCEEEEEeCCC
Confidence 445667777666666778888888 3344444321 235689999999999888888999999999987
Q ss_pred CcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCC----CeEEEEECCCCCCCcceeee--ccCCCeEEEEE
Q 000054 2303 GGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNG----INVVVWDTLAPPTSSRASIT--CHEGGARSISV 2374 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~D----GtVrIWDl~t~~~k~v~sl~--gHs~~VtSLaf 2374 (2548)
++.... ...+...+. +++++|+++++.. .+ +.|.+||... ......+. .+...+.++.+
T Consensus 76 ~~~~~~--------~~~~~~~~~~i~~~~dg~l~v~~~---~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~i~~ 142 (333)
T 2dg1_A 76 KEIKRP--------FVSHKANPAAIKIHKDGRLFVCYL---GDFKSTGGIFAATENG--DNLQDIIEDLSTAYCIDDMVF 142 (333)
T ss_dssp CCEEEE--------EECSSSSEEEEEECTTSCEEEEEC---TTSSSCCEEEEECTTS--CSCEEEECSSSSCCCEEEEEE
T ss_pred CcEEEE--------eeCCCCCcceEEECCCCcEEEEeC---CCCCCCceEEEEeCCC--CEEEEEEccCccCCcccceEE
Confidence 653221 112233343 4789999887763 44 6899999875 22221222 24457899999
Q ss_pred ccCCCCCCCCCCEEEEEeC------CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEE
Q 000054 2375 FDNDLGSGSVSPLIVTGGK------GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWY 2448 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~------DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwd 2448 (2548)
.|+ +.++++... .+.|..+| ..+++.. .+
T Consensus 143 d~~-------g~l~v~~~~~~~~~~~~~l~~~~---~~~~~~~-~~---------------------------------- 177 (333)
T 2dg1_A 143 DSK-------GGFYFTDFRGYSTNPLGGVYYVS---PDFRTVT-PI---------------------------------- 177 (333)
T ss_dssp CTT-------SCEEEEECCCBTTBCCEEEEEEC---TTSCCEE-EE----------------------------------
T ss_pred CCC-------CCEEEEeccccccCCCceEEEEe---CCCCEEE-Ee----------------------------------
Confidence 988 667766553 24455555 2222221 11
Q ss_pred cccCCCCCEEEEEEeCCCCEEE-EEeCCCcEEEEECCC-CcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe
Q 000054 2449 IPKAHLGSVTRISTVPNTSLFL-TGSKDGDVKLWDAKA-AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG 2526 (2548)
Q Consensus 2449 i~~gH~~~VtsLafSPdG~~La-SGS~DGtIrIWDl~T-gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG 2526 (2548)
..+...+..++|+|+|+.++ +.+.++.|.+||+.+ ++.+..+.. ..+ ..+.++ ..+..++++++|
T Consensus 178 --~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~----~~~--~~~~~~-----~~~~~i~~d~~G 244 (333)
T 2dg1_A 178 --IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGA----TIP--YYFTGH-----EGPDSCCIDSDD 244 (333)
T ss_dssp --EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE----EEE--EECCSS-----SEEEEEEEBTTC
T ss_pred --ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccc----eEE--EecCCC-----CCCCceEECCCC
Confidence 11223467899999998654 445688999999964 443322210 000 001222 124567999999
Q ss_pred --EEEEECCCcEEEEECCCC
Q 000054 2527 --FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2527 --LaSGS~DGtIrIWDL~sg 2544 (2548)
+++...++.|.+||.++.
T Consensus 245 ~l~v~~~~~~~v~~~d~~g~ 264 (333)
T 2dg1_A 245 NLYVAMYGQGRVLVFNKRGY 264 (333)
T ss_dssp CEEEEEETTTEEEEECTTSC
T ss_pred CEEEEEcCCCEEEEECCCCC
Confidence 456667899999998543
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.80 E-value=7e-07 Score=112.26 Aligned_cols=272 Identities=11% Similarity=0.026 Sum_probs=171.5
Q ss_pred cCCCCEEEEEEC-----CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe----------CC
Q 000054 2228 HPLRPFFLVGSS-----NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA----------LD 2292 (2548)
Q Consensus 2228 SPdG~~LASGS~-----DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS----------~D 2292 (2548)
.|+++.+.+... ++.|.+.|..+++.+.++.. + ..+ .++++|||++++++. .+
T Consensus 41 ~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~v--G--------~~P--~va~spDG~~lyVan~~~~r~~~G~~~ 108 (386)
T 3sjl_D 41 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG--G--------FLP--NPVVADDGSFIAHASTVFSRIARGERT 108 (386)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE--C--------SSC--EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred CCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEEC--C--------CCC--cEEECCCCCEEEEEcccccccccCCCC
Confidence 488888777654 68999999999999888754 1 123 399999999988875 36
Q ss_pred CcEEEEEcCCCcccccccCcc-ceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2293 GTVCTWQLEVGGRSNVRPMES-CLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s-~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
+.|.+||..+.+.....+... .....+....-..++|||++++++... .++.|.++|+.+ .+.+..+.. .+.
T Consensus 109 ~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~-~~~~VsVID~~t--~~vv~tI~v--~g~-- 181 (386)
T 3sjl_D 109 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS-PAPAVGVVDLEG--KAFKRMLDV--PDC-- 181 (386)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS-SSCEEEEEETTT--TEEEEEEEC--CSE--
T ss_pred CEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC-CCCeEEEEECCC--CcEEEEEEC--CCc--
Confidence 789999999876433211100 000001122234699999998887411 368999999986 566666642 122
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeec-CCCCCCCcccccccc-CCCCCC-ccCCCCCceEEE
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKH-SDRGGSSINTCAHAD-AQTGSG-SKPGDQNGMLWY 2448 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~-~~~~~s~~~~~~vaf-SpdGk~-v~s~D~sv~Iwd 2448 (2548)
....|.+ ...+++.+.||.+.+.++.. .++...... ..............| .++|++ ..+.++.+++.|
T Consensus 182 ~~~~P~g------~~~~~~~~~DG~~~~v~~~~--~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d 253 (386)
T 3sjl_D 182 YHIFPTA------PDTFFMHCRDGSLAKVAFGT--EGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQID 253 (386)
T ss_dssp EEEEEEE------TTEEEEEETTSCEEEEECCS--SSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEE
T ss_pred ceeecCC------CceeEEECCCCCEEEEECCC--CCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEE
Confidence 1223442 45777888999999999531 244322210 001111111111233 467764 444456677776
Q ss_pred cccCC--------------------CCCEEEEEEeCCCCEEEEEeC----------CCcEEEEECCCCcEEEEecccccc
Q 000054 2449 IPKAH--------------------LGSVTRISTVPNTSLFLTGSK----------DGDVKLWDAKAAQLVYHWSKLHER 2498 (2548)
Q Consensus 2449 i~~gH--------------------~~~VtsLafSPdG~~LaSGS~----------DGtIrIWDl~Tgell~tL~~~Hs~ 2498 (2548)
..... .+....++++|+++.++.... .+.|.+.|+.+++.+.+++
T Consensus 254 ~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~----- 328 (386)
T 3sjl_D 254 LSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE----- 328 (386)
T ss_dssp CTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-----
T ss_pred CCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE-----
Confidence 52211 112334778998888777643 2579999999999999883
Q ss_pred cccccCcccCCCCceeecEEEEEEcCCe---EE-EEECCCcEEEEECCCCc
Q 000054 2499 HTFLQPSSRGFGGVVRAGVTDIQVVSRG---FL-SCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2499 hsfl~~tl~GH~~~V~a~VtsLafSPdG---La-SGS~DGtIrIWDL~sg~ 2545 (2548)
-+ ..++++++++|+ |+ +...+++|.++|..++.
T Consensus 329 --------vg------~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 329 --------MG------HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp --------EE------EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred --------CC------CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 11 235678999998 44 45669999999998874
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-06 Score=104.26 Aligned_cols=247 Identities=11% Similarity=0.078 Sum_probs=153.6
Q ss_pred EEEEEcCCCCEEEE-------EECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCCc
Q 000054 2223 RAFSSHPLRPFFLV-------GSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGT 2294 (2548)
Q Consensus 2223 ~~VsfSPdG~~LAS-------GS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DGt 2294 (2548)
.+++|+++|.++++ +..++.|.+||..+++... +.. + ...++...+.+++++++ |+.+++ +.++.
T Consensus 21 ~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~-~~~-~----~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~ 93 (314)
T 1pjx_A 21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTV-ICK-P----EVNGYGGIPAGCQCDRDANQLFVA-DMRLG 93 (314)
T ss_dssp EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEE-EEC-C----EETTEECCEEEEEECSSSSEEEEE-ETTTE
T ss_pred cCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEE-EEe-c----ccCCCCCCCceEEEecCCCcEEEE-ECCCC
Confidence 67888899998888 6788999999988776532 211 0 00112367999999999 664544 44457
Q ss_pred EEEEEcCCCccccc-ccCccceeccCCcccEEEEcCCCCEEEEEeccCCC---------------CeEEEEECCCCCCCc
Q 000054 2295 VCTWQLEVGGRSNV-RPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG---------------INVVVWDTLAPPTSS 2358 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i-~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~D---------------GtVrIWDl~t~~~k~ 2358 (2548)
|.+||.+ ++.... ... ..........-.+++++|+++++.. .+ +.|..||.. ++.
T Consensus 94 l~~~d~~-g~~~~~~~~~--~~~~~~~~~~~i~~d~~g~l~v~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~---g~~ 164 (314)
T 1pjx_A 94 LLVVQTD-GTFEEIAKKD--SEGRRMQGCNDCAFDYEGNLWITAP---AGEVAPADYTRSMQEKFGSIYCFTTD---GQM 164 (314)
T ss_dssp EEEEETT-SCEEECCSBC--TTSCBCBCCCEEEECTTSCEEEEEC---BCBCTTSCCCBTTSSSCEEEEEECTT---SCE
T ss_pred EEEEeCC-CCEEEEEecc--CCCccccCCcCEEECCCCCEEEEec---CcccccccccccccCCCCeEEEECCC---CCE
Confidence 8899987 543221 100 0000001111234788998887753 33 466667653 222
Q ss_pred ceeeeccCCCeEEEEEc----cCCCCCCCCCC-EEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCC
Q 000054 2359 RASITCHEGGARSISVF----DNDLGSGSVSP-LIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQT 2433 (2548)
Q Consensus 2359 v~sl~gHs~~VtSLafs----P~dlg~gs~g~-lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpd 2433 (2548)
..+..+......++++ ++ ++ ++++...++.|.+||+. .+++....
T Consensus 165 -~~~~~~~~~~~~i~~~~~~d~d-------g~~l~v~~~~~~~i~~~~~~--~~g~~~~~-------------------- 214 (314)
T 1pjx_A 165 -IQVDTAFQFPNGIAVRHMNDGR-------PYQLIVAETPTKKLWSYDIK--GPAKIENK-------------------- 214 (314)
T ss_dssp -EEEEEEESSEEEEEEEECTTSC-------EEEEEEEETTTTEEEEEEEE--ETTEEEEE--------------------
T ss_pred -EEeccCCCCcceEEEecccCCC-------CCEEEEEECCCCeEEEEECC--CCCccccc--------------------
Confidence 2233344567889998 87 54 44555678999999942 12221100
Q ss_pred CCCccCCCCCceEEEcccCCC-CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCc
Q 000054 2434 GSGSKPGDQNGMLWYIPKAHL-GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGV 2512 (2548)
Q Consensus 2434 Gk~v~s~D~sv~Iwdi~~gH~-~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~ 2512 (2548)
..+....++. ..+..++++++|.++++...++.|.+||..+++.+..+. .+.
T Consensus 215 -----------~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~--------------~~~-- 267 (314)
T 1pjx_A 215 -----------KVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR--------------CPF-- 267 (314)
T ss_dssp -----------EEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE--------------CSS--
T ss_pred -----------eEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe--------------CCC--
Confidence 0111113333 567889999999999988889999999998777655441 121
Q ss_pred eeecEEEEEEcCCe--EE-EEECCCcEEEEECCCC
Q 000054 2513 VRAGVTDIQVVSRG--FL-SCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2513 V~a~VtsLafSPdG--La-SGS~DGtIrIWDL~sg 2544 (2548)
..+.+++++|+| |. +...++.|..|++...
T Consensus 268 --~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 268 --EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp --SCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred --CCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 235677999998 44 5556689999998753
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.79 E-value=4.1e-07 Score=111.11 Aligned_cols=239 Identities=10% Similarity=-0.022 Sum_probs=151.8
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
..+.+. +++.+++...++.|.+||..+++.+.++.. ......++++++++.+++...++.|.+||..+
T Consensus 47 ~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-----------~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t 114 (328)
T 3dsm_A 47 QSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-----------FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT 114 (328)
T ss_dssp EEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-----------CSSEEEEEEEETTEEEEEEBSCSEEEEEETTT
T ss_pred eEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-----------CCCCcEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence 445543 355666667789999999999998888732 25688999999985444444899999999998
Q ss_pred CcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCC
Q 000054 2303 GGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSG 2382 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~g 2382 (2548)
++.....+.............+. + ++..+.++.. ..++.|.++|+.+ .+.+..+.. ......+.++|+
T Consensus 115 ~~~~~~i~~g~~~~~~~~p~~i~-~--~~~~lyv~~~-~~~~~v~viD~~t--~~~~~~i~~-g~~p~~i~~~~d----- 182 (328)
T 3dsm_A 115 YEITGYIECPDMDMESGSTEQMV-Q--YGKYVYVNCW-SYQNRILKIDTET--DKVVDELTI-GIQPTSLVMDKY----- 182 (328)
T ss_dssp TEEEEEEECTTCCTTTCBCCCEE-E--ETTEEEEEEC-TTCCEEEEEETTT--TEEEEEEEC-SSCBCCCEECTT-----
T ss_pred CeEEEEEEcCCccccCCCcceEE-E--ECCEEEEEcC-CCCCEEEEEECCC--CeEEEEEEc-CCCccceEEcCC-----
Confidence 75432211100000000222333 3 3444444431 0378999999976 455555543 234567888887
Q ss_pred CCCCEEEEEeCC----------CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccC
Q 000054 2383 SVSPLIVTGGKG----------GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKA 2452 (2548)
Q Consensus 2383 s~g~lLVSGS~D----------GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~g 2452 (2548)
+++++++..+ +.|.++| ..+++....+. ..
T Consensus 183 --G~l~v~~~~~~~~~~~~~~~~~v~~id---~~t~~v~~~~~-----------------------------------~~ 222 (328)
T 3dsm_A 183 --NKMWTITDGGYEGSPYGYEAPSLYRID---AETFTVEKQFK-----------------------------------FK 222 (328)
T ss_dssp --SEEEEEBCCBCTTCSSCBCCCEEEEEE---TTTTEEEEEEE-----------------------------------CC
T ss_pred --CCEEEEECCCccCCccccCCceEEEEE---CCCCeEEEEEe-----------------------------------cC
Confidence 5666665554 7899999 55565544431 11
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcC-Ce--EEE
Q 000054 2453 HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVS-RG--FLS 2529 (2548)
Q Consensus 2453 H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSP-dG--LaS 2529 (2548)
.......++++|+++.++++.. .|.+||..+++..... + +..+. .....++++| ++ +++
T Consensus 223 ~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~--------~----~~~~~----~~p~gi~vdp~~g~lyva 284 (328)
T 3dsm_A 223 LGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRP--------F----LEFRD----TKYYGLTVNPNNGEVYVA 284 (328)
T ss_dssp TTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSC--------S----BCCCS----SCEEEEEECTTTCCEEEE
T ss_pred CCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeee--------e----ecCCC----CceEEEEEcCCCCeEEEE
Confidence 1235789999999999888755 8999999988753110 0 11111 2356779999 45 456
Q ss_pred E----ECCCcEEEEECCC
Q 000054 2530 C----GGDGSVKLIQLED 2543 (2548)
Q Consensus 2530 G----S~DGtIrIWDL~s 2543 (2548)
. ..+++|.+||.+.
T Consensus 285 ~~~~y~~~~~V~v~d~~g 302 (328)
T 3dsm_A 285 DAIDYQQQGIVYRYSPQG 302 (328)
T ss_dssp ECTTSSSEEEEEEECTTC
T ss_pred cccccccCCEEEEECCCC
Confidence 5 5789999999884
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-06 Score=115.52 Aligned_cols=234 Identities=15% Similarity=0.072 Sum_probs=158.5
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC--CCccc
Q 000054 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE--VGGRS 2306 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~--tgk~i 2306 (2548)
|.+.++++...+++|.++|..+++.+.++.. ...+..+.|+|||+++++++.|+.|.+||+. +++..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-----------g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v 233 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-----------GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV 233 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-----------SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-----------CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe
Confidence 4445667778899999999999998888753 1357799999999999999999999999995 55322
Q ss_pred ccccCccceeccCCcccEEEEc----CCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeec----------cCC-CeEE
Q 000054 2307 NVRPMESCLCFSSHAMDVSYIT----SSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC----------HEG-GARS 2371 (2548)
Q Consensus 2307 ~i~p~~s~~t~~gH~~~V~afS----pdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g----------Hs~-~VtS 2371 (2548)
.. ...+....-..++ |+|++++++.. .++.|.++|..+ .+.+..+.. |.. .+..
T Consensus 234 ~~-------i~~G~~P~~ia~s~~~~pDGk~l~v~n~--~~~~v~ViD~~t--~~~~~~i~~~~~~~~~~~~~p~~rva~ 302 (567)
T 1qks_A 234 AE-------IKIGSEARSIETSKMEGWEDKYAIAGAY--WPPQYVIMDGET--LEPKKIQSTRGMTYDEQEYHPEPRVAA 302 (567)
T ss_dssp EE-------EECCSEEEEEEECCSTTCTTTEEEEEEE--ETTEEEEEETTT--CCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred EE-------EecCCCCceeEEccccCCCCCEEEEEEc--cCCeEEEEECCC--CcEEEEEeccccccccccccCCCceEE
Confidence 11 1112222223588 69999988863 679999999876 566555442 222 5778
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK 2451 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~ 2451 (2548)
+..++.+ ..++++...+|.|.++|.. ..+.+... .+
T Consensus 303 i~~s~~~------~~~vv~~~~~g~v~~vd~~---~~~~~~v~---------------------------------~i-- 338 (567)
T 1qks_A 303 ILASHYR------PEFIVNVKETGKILLVDYT---DLNNLKTT---------------------------------EI-- 338 (567)
T ss_dssp EEECSSS------SEEEEEETTTTEEEEEETT---CSSEEEEE---------------------------------EE--
T ss_pred EEEcCCC------CEEEEEecCCCeEEEEecC---CCccceee---------------------------------ee--
Confidence 8887773 4466666778999999953 22221111 00
Q ss_pred CCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCcEEEEecc-cccccccccCcccCCCCceeecEEEEEEcCC-e--
Q 000054 2452 AHLGSVTRISTVPNTSLFLTGS-KDGDVKLWDAKAAQLVYHWSK-LHERHTFLQPSSRGFGGVVRAGVTDIQVVSR-G-- 2526 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS-~DGtIrIWDl~Tgell~tL~~-~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPd-G-- 2526 (2548)
........+.|+|+|++++++. .+++|.++|+.+++++..++- .. ..|-+. .+ . -++|+ |
T Consensus 339 ~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~----------~Phpg~---g~-~-~~~p~~g~v 403 (567)
T 1qks_A 339 SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ----------TPHPGR---GA-N-FVHPTFGPV 403 (567)
T ss_dssp ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS----------SBCCTT---CE-E-EEETTTEEE
T ss_pred eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc----------CCCCcc---ce-e-eECCCCCcE
Confidence 1223455788999999987776 578999999999998887731 10 122211 11 1 25787 4
Q ss_pred EEEEE-CCCcEEEEECCC
Q 000054 2527 FLSCG-GDGSVKLIQLED 2543 (2548)
Q Consensus 2527 LaSGS-~DGtIrIWDL~s 2543 (2548)
.+++. .+++|.++|.++
T Consensus 404 ~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 404 WATSHMGDDSVALIGTDP 421 (567)
T ss_dssp EEEEBSSSSEEEEEECCT
T ss_pred EEeCCCCCCeEEEecCCC
Confidence 44443 578999999876
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.69 E-value=6.4e-07 Score=120.28 Aligned_cols=237 Identities=10% Similarity=-0.013 Sum_probs=139.6
Q ss_pred CCCCEEEEEECCC---eEEEEEc--CCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEE-----EEeCCCcEEEE
Q 000054 2229 PLRPFFLVGSSNT---HIYLWEF--GKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-----SAALDGTVCTW 2298 (2548)
Q Consensus 2229 PdG~~LASGS~DG---sVrLWDl--~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~La-----SGS~DGtVrVW 2298 (2548)
|+|.+++....++ .-.||.. ..++....+.... ....|...+.+++|||||++|+ .|+.+.+|++|
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~----~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~ 152 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNG----WSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVI 152 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGG----SSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHH----hccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEE
Confidence 7888887655443 3444544 3444332222100 1123445799999999999998 34445789999
Q ss_pred EcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCe-------------EEEEECCCCCCC--cceeee
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGIN-------------VVVWDTLAPPTS--SRASIT 2363 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGt-------------VrIWDl~t~~~k--~v~sl~ 2363 (2548)
|+.+++..... .+......-.+|+|||+.|+.+. .|.. |++|++.++..+ .+....
T Consensus 153 dl~tg~~~~~~------~~~~~~~~~~~wspDg~~l~~~~---~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~ 223 (695)
T 2bkl_A 153 DVDSGEWSKVD------VIEGGKYATPKWTPDSKGFYYEW---LPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT 223 (695)
T ss_dssp ETTTCCBCSSC------CBSCCTTCCCEECTTSSEEEEEE---CCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC
T ss_pred ECCCCCCcCCc------ccCcccccceEEecCCCEEEEEE---ecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC
Confidence 99988643000 11222112235999999998875 5544 999999864322 233333
Q ss_pred ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCC----cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccC
Q 000054 2364 CHEGGARSISVFDNDLGSGSVSPLIVTGGKGG----DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKP 2439 (2548)
Q Consensus 2364 gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DG----tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s 2439 (2548)
.|...+.++.|+|+ +++|+.++.++ .|.+|| ..+++. ..+
T Consensus 224 ~~~~~~~~~~~SpD-------G~~l~~~~~~~~~~~~l~~~~---~~~~~~-~~l------------------------- 267 (695)
T 2bkl_A 224 GDPTTFLQSDLSRD-------GKYLFVYILRGWSENDVYWKR---PGEKDF-RLL------------------------- 267 (695)
T ss_dssp CCTTCEEEEEECTT-------SCCEEEEEEETTTEEEEEEEC---TTCSSC-EEE-------------------------
T ss_pred CCCEEEEEEEECCC-------CCEEEEEEeCCCCceEEEEEc---CCCCce-EEe-------------------------
Confidence 45668899999999 67777666555 555555 223322 221
Q ss_pred CCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEe---CCCcEEEEECCCCcE--EEEecccccccccccCcccCCCCcee
Q 000054 2440 GDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGS---KDGDVKLWDAKAAQL--VYHWSKLHERHTFLQPSSRGFGGVVR 2514 (2548)
Q Consensus 2440 ~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS---~DGtIrIWDl~Tgel--l~tL~~~Hs~hsfl~~tl~GH~~~V~ 2514 (2548)
..+...+....+ ++|.+++++. .++.|.+||+.+++. ...+ +..+..
T Consensus 268 -----------~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l-------------~~~~~~--- 319 (695)
T 2bkl_A 268 -----------VKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEI-------------VPEDSS--- 319 (695)
T ss_dssp -----------EECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEE-------------ECCCSS---
T ss_pred -----------ecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEE-------------ecCCCC---
Confidence 223334455556 5566544444 258999999987652 1222 112211
Q ss_pred ecEEEEEEcCCe-EEEEECCCcEEEEECC
Q 000054 2515 AGVTDIQVVSRG-FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2515 a~VtsLafSPdG-LaSGS~DGtIrIWDL~ 2542 (2548)
..+.+++++.+. +++...|+..++|.++
T Consensus 320 ~~l~~~~~~~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 320 ASLLSVSIVGGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp CEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred CeEEEEEEECCEEEEEEEECCEEEEEEEe
Confidence 124556787444 7788999998888664
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=5.1e-06 Score=109.63 Aligned_cols=245 Identities=11% Similarity=0.010 Sum_probs=159.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcC--CCceeEEEeccCCCCCCCCCCCCCeEEEEEc----cCCCEEEEEeCC-Cc
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFG--KDKATATYGVLPAANVPPPYALASISALQFD----HYGHRFASAALD-GT 2294 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~--tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFS----PdG~~LaSGS~D-Gt 2294 (2548)
...+.++|||+++.+++.|+.|.+||+. +++.+..+.. + .....++|+ |+|++++++... ++
T Consensus 199 p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G---------~~P~~ia~s~~~~pDGk~l~v~n~~~~~ 267 (567)
T 1qks_A 199 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--G---------SEARSIETSKMEGWEDKYAIAGAYWPPQ 267 (567)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--C---------SEEEEEEECCSTTCTTTEEEEEEEETTE
T ss_pred ccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--C---------CCCceeEEccccCCCCCEEEEEEccCCe
Confidence 3578899999999999999999999996 7777776642 1 346799999 699988877654 89
Q ss_pred EEEEEcCCCcccccccCccc--------------eeccCCc---------------------------------ccE--E
Q 000054 2295 VCTWQLEVGGRSNVRPMESC--------------LCFSSHA---------------------------------MDV--S 2325 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~--------------~t~~gH~---------------------------------~~V--~ 2325 (2548)
|.++|..+.+.+...+.... .....|. ... .
T Consensus 268 v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~ 347 (567)
T 1qks_A 268 YVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDG 347 (567)
T ss_dssp EEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEE
T ss_pred EEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCc
Confidence 99999877654432221100 0000000 000 1
Q ss_pred EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeec-----cCC-CeEEEEEccCCCCCCCCCCEEEEEe-CCCcEE
Q 000054 2326 YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC-----HEG-GARSISVFDNDLGSGSVSPLIVTGG-KGGDVG 2398 (2548)
Q Consensus 2326 afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g-----Hs~-~VtSLafsP~dlg~gs~g~lLVSGS-~DGtVr 2398 (2548)
.|+|+|++++++. ..++.|.++|+.+ .+.+..+.. |.+ ++. + ++|+. +...+++. .+++|.
T Consensus 348 ~~~pdgr~~~va~--~~sn~V~ViD~~t--~kl~~~i~vgg~~Phpg~g~~-~-~~p~~------g~v~~t~~~g~~~Vs 415 (567)
T 1qks_A 348 GLDGSHRYFITAA--NARNKLVVIDTKE--GKLVAIEDTGGQTPHPGRGAN-F-VHPTF------GPVWATSHMGDDSVA 415 (567)
T ss_dssp EECTTSCEEEEEE--GGGTEEEEEETTT--TEEEEEEECSSSSBCCTTCEE-E-EETTT------EEEEEEEBSSSSEEE
T ss_pred eECCCCCEEEEEe--CCCCeEEEEECCC--CcEEEEEeccCcCCCCcccee-e-ECCCC------CcEEEeCCCCCCeEE
Confidence 3889999988776 2578999999986 444443332 433 333 2 46763 55666664 568999
Q ss_pred EEeCCccc----cCceeeeecCCCCCCCccccccccCCCCCC--ccCC-------CCCceEEEcccC-------------
Q 000054 2399 IHDFRYIA----TGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPG-------DQNGMLWYIPKA------------- 2452 (2548)
Q Consensus 2399 LWDLR~l~----TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~-------D~sv~Iwdi~~g------------- 2452 (2548)
++|..... ..+.++.+.... .....+..+|+++. +... .+.+.++|+...
T Consensus 416 vid~~~~~~~~~~~kvv~~i~~~g----~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~ 491 (567)
T 1qks_A 416 LIGTDPEGHPDNAWKILDSFPALG----GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLP 491 (567)
T ss_dssp EEECCTTTCTTTBTSEEEEEECSC----SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEEC
T ss_pred EecCCCCCCccccCEEEEEEecCC----CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEec
Confidence 99953100 045556653222 11234567888886 2221 246778875432
Q ss_pred ---------CCCCEEEEEEeCCCCEEEEEe-----CCCcEEEEECCCCcEEEEec
Q 000054 2453 ---------HLGSVTRISTVPNTSLFLTGS-----KDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2453 ---------H~~~VtsLafSPdG~~LaSGS-----~DGtIrIWDl~Tgell~tL~ 2493 (2548)
-...+..+.|+|+|+.+..+. .++.|.|+|.++++++.+++
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 492 IAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp HHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred cccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 023568889999998876653 37999999999999998884
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.6e-06 Score=116.52 Aligned_cols=206 Identities=13% Similarity=0.086 Sum_probs=137.4
Q ss_pred EEEEEcCCCCEEEEEECCCe----------------EEEEEcCCCcee--EEEeccCCCCCCCCCCCCCeEEEEEccCCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTH----------------IYLWEFGKDKAT--ATYGVLPAANVPPPYALASISALQFDHYGH 2284 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGs----------------VrLWDl~tg~~l--~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~ 2284 (2548)
..++|+|||+.|+.++.++. |++|++.+++.. ..+.. ..|...+..+.|+|||+
T Consensus 174 ~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~--------~~~~~~~~~~~~SpDg~ 245 (710)
T 2xdw_A 174 SCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF--------PDEPKWMGGAELSDDGR 245 (710)
T ss_dssp CCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC--------TTCTTCEEEEEECTTSC
T ss_pred ceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEecc--------CCCCeEEEEEEEcCCCC
Confidence 46789999999999888766 999999887632 22221 12335688999999999
Q ss_pred EEEEEeC-----CCcEEEEEcCC------CcccccccCccceeccCCcccEE-EEcCCCCEEEEEecc-CCCCeEEEEEC
Q 000054 2285 RFASAAL-----DGTVCTWQLEV------GGRSNVRPMESCLCFSSHAMDVS-YITSSGSVIAAAGHS-SNGINVVVWDT 2351 (2548)
Q Consensus 2285 ~LaSGS~-----DGtVrVWDl~t------gk~i~i~p~~s~~t~~gH~~~V~-afSpdGslLATgG~S-S~DGtVrIWDl 2351 (2548)
+|+.++. +..|.+||+.+ +.. ....+..+...+. .++++|+.|+..+.. ..++.|.+||+
T Consensus 246 ~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~ 318 (710)
T 2xdw_A 246 YVLLSIREGCDPVNRLWYCDLQQESNGITGIL-------KWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDF 318 (710)
T ss_dssp EEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-------CCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEET
T ss_pred EEEEEEEccCCCccEEEEEECcccccccCCcc-------ceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeC
Confidence 9988765 56899999976 321 1112333333333 478888877766521 02347999998
Q ss_pred CCCCCCcceeeeccCC--CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccc
Q 000054 2352 LAPPTSSRASITCHEG--GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHA 2429 (2548)
Q Consensus 2352 ~t~~~k~v~sl~gHs~--~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~va 2429 (2548)
..+.......+..|.. .+..+.|+++ +.++++...|+..+||-+. +.+|+.+..+
T Consensus 319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~lv~~~~~~g~~~l~~~~-~~~g~~~~~l--------------- 375 (710)
T 2xdw_A 319 TDPEESKWKVLVPEHEKDVLEWVACVRS-------NFLVLCYLHDVKNTLQLHD-LATGALLKIF--------------- 375 (710)
T ss_dssp TSCCGGGCEEEECCCSSCEEEEEEEETT-------TEEEEEEEETTEEEEEEEE-TTTCCEEEEE---------------
T ss_pred CCCCcccceeccCCCCCCeEEEEEEEcC-------CEEEEEEEECCEEEEEEEE-CCCCCEEEec---------------
Confidence 7632113355555554 6888888855 5688888889865544321 4455554444
Q ss_pred cCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEE-e---CCCcEEEEECCCCc
Q 000054 2430 DAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTG-S---KDGDVKLWDAKAAQ 2487 (2548)
Q Consensus 2430 fSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSG-S---~DGtIrIWDl~Tge 2487 (2548)
..+.+.|..+.++|+++.++.. + ..++|..||+.+++
T Consensus 376 ---------------------~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 376 ---------------------PLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ---------------------CCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ---------------------CCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 3456678889999988755533 3 25789999999877
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.7e-06 Score=116.51 Aligned_cols=243 Identities=11% Similarity=0.045 Sum_probs=146.4
Q ss_pred EEEEEEEcCCCCEEEEE-----ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCc-
Q 000054 2221 STRAFSSHPLRPFFLVG-----SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT- 2294 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LASG-----S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGt- 2294 (2548)
.+..++|+|||+++|-+ +.+..|++||+.+|+.+.... . ......++|+ ||+.|+.++.|+.
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~---------~~k~~~~~Ws-Dg~~l~y~~~~~~~ 197 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL--K---------DVKFSGISWL-GNEGFFYSSYDKPD 197 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--E---------EEESCCCEEE-TTTEEEEEESSCCC
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--C---------CceeccEEEe-CCCEEEEEEecCcc
Confidence 36788999999999843 333579999999998654311 0 0113567899 9999999988744
Q ss_pred ------------EEEEEcCCCcccccccCccceeccC-CcccEE--EEcCCCCEEEEEecc-CCCCeEEEEECCCCCCCc
Q 000054 2295 ------------VCTWQLEVGGRSNVRPMESCLCFSS-HAMDVS--YITSSGSVIAAAGHS-SNGINVVVWDTLAPPTSS 2358 (2548)
Q Consensus 2295 ------------VrVWDl~tgk~i~i~p~~s~~t~~g-H~~~V~--afSpdGslLATgG~S-S~DGtVrIWDl~t~~~k~ 2358 (2548)
|.+|++.++...... ...... |...+. .++|||+.++....+ ..++.|.++|+..+. ..
T Consensus 198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~----v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~-~~ 272 (693)
T 3iuj_A 198 GSELSARTDQHKVYFHRLGTAQEDDRL----VFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN-AP 272 (693)
T ss_dssp -------CCCCEEEEEETTSCGGGCEE----EESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT-CC
T ss_pred cccccccCCCcEEEEEECCCCcccceE----EEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC-Cc
Confidence 999999876432110 111122 222222 489999987654321 133589999997642 24
Q ss_pred ceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCC---CcEEEEeCCccccCce--eeeecCCCCCCCccccccccCCC
Q 000054 2359 RASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKG---GDVGIHDFRYIATGKT--KKHKHSDRGGSSINTCAHADAQT 2433 (2548)
Q Consensus 2359 v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~D---GtVrLWDLR~l~TGk~--l~tl~~~~~~s~~~~~~vafSpd 2433 (2548)
...+..+.+..... +++++ +.+++++..+ +.|..+|+. ++.. .+.+
T Consensus 273 ~~~l~~~~~~~~~~-~~~~g------~~l~~~t~~~~~~~~l~~~d~~---~~~~~~~~~l------------------- 323 (693)
T 3iuj_A 273 LLTVQGDLDADVSL-VDNKG------STLYLLTNRDAPNRRLVTVDAA---NPGPAHWRDL------------------- 323 (693)
T ss_dssp CEEEECSSSSCEEE-EEEET------TEEEEEECTTCTTCEEEEEETT---SCCGGGCEEE-------------------
T ss_pred eEEEeCCCCceEEE-EeccC------CEEEEEECCCCCCCEEEEEeCC---CCCccccEEE-------------------
Confidence 45566666666665 45552 4455555544 578888843 2221 1111
Q ss_pred CCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeC-CC--cEEEEECCCCcEEEEecccccccccccCcccCCC
Q 000054 2434 GSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSK-DG--DVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFG 2510 (2548)
Q Consensus 2434 Gk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~-DG--tIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~ 2510 (2548)
..|...+. .|+++++.|+.... || .|++||+..+ ....+. +.+.
T Consensus 324 -----------------~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~------------~p~~- 370 (693)
T 3iuj_A 324 -----------------IPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVA------------LPGL- 370 (693)
T ss_dssp -----------------ECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEEC------------CSSS-
T ss_pred -----------------ecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEee------------cCCC-
Confidence 23444444 88999988877665 44 6899998754 444441 1111
Q ss_pred CceeecEEEEEEcCCe--EEEEECC----CcEEEEECCCCcc
Q 000054 2511 GVVRAGVTDIQVVSRG--FLSCGGD----GSVKLIQLEDYQH 2546 (2548)
Q Consensus 2511 ~~V~a~VtsLafSPdG--LaSGS~D----GtIrIWDL~sg~l 2546 (2548)
+ .+..+.+++++ ++....+ ++|..||+.++..
T Consensus 371 ~----~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 371 G----SVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp S----EEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred c----eEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 1 23445677777 4433333 7899999877643
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.6e-05 Score=91.41 Aligned_cols=233 Identities=11% Similarity=0.059 Sum_probs=154.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
..++.+.++|.++++...++.|.+||.. ++.. .+.. + .+...+.+++++++|+.+++...++.|..+|..
T Consensus 22 p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-~~~~-~-------~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~ 91 (300)
T 2qc5_A 22 PYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-EFEV-P-------TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK 91 (300)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEEC-S-------STTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred cceeeECCCCCEEEEcCCCCeEEEECCC-CceE-EEEC-C-------CCCCcceeEEECCCCCEEEEecCCCeEEEECCC
Confidence 5788888999988887788999999987 5433 2321 1 123679999999999988877778899999987
Q ss_pred CCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcc-eeeeccCCCeEEEEEccCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR-ASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v-~sl~gHs~~VtSLafsP~d 2378 (2548)
++.... ........+. ++.++|+++++.. .++.|..+|.. ++.. ..+......+.++++.++
T Consensus 92 -g~~~~~-------~~~~~~~~~~~i~~~~~g~l~v~~~---~~~~i~~~~~~---g~~~~~~~~~~~~~~~~i~~d~~- 156 (300)
T 2qc5_A 92 -GGFTEY-------PLPQPDSGPYGITEGLNGDIWFTQL---NGDRIGKLTAD---GTIYEYDLPNKGSYPAFITLGSD- 156 (300)
T ss_dssp -SCEEEE-------ECSSTTCCEEEEEECSTTCEEEEET---TTTEEEEECTT---SCEEEEECSSTTCCEEEEEECTT-
T ss_pred -CCeEEe-------cCCCCCCCCccceECCCCCEEEEcc---CCCeEEEECCC---CCEEEccCCCCCCCceeEEECCC-
Confidence 532211 1111112232 4778888877753 57889999875 2222 222234567899999887
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEE
Q 000054 2379 LGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVT 2458 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vt 2458 (2548)
+.+.++...++.|..+|. +++..... ...+...+.
T Consensus 157 ------g~l~v~~~~~~~i~~~~~----~g~~~~~~-----------------------------------~~~~~~~~~ 191 (300)
T 2qc5_A 157 ------NALWFTENQNNSIGRITN----TGKLEEYP-----------------------------------LPTNAAAPV 191 (300)
T ss_dssp ------SSEEEEETTTTEEEEECT----TCCEEEEE-----------------------------------CSSTTCCEE
T ss_pred ------CCEEEEecCCCeEEEECC----CCcEEEee-----------------------------------CCCCCCCcc
Confidence 567777666888999983 23332211 012345678
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EE-EEECCCcE
Q 000054 2459 RISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FL-SCGGDGSV 2536 (2548)
Q Consensus 2459 sLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-La-SGS~DGtI 2536 (2548)
+++++++|.+.++....+.|.+||. +++..... +..+. ..+.+++++++| +. +...++.|
T Consensus 192 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~-------------~~~~~----~~~~~i~~d~~g~l~v~~~~~~~i 253 (300)
T 2qc5_A 192 GITSGNDGALWFVEIMGNKIGRITT-TGEISEYD-------------IPTPN----ARPHAITAGKNSEIWFTEWGANQI 253 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE-------------CSSTT----CCEEEEEECSTTCEEEEETTTTEE
T ss_pred eEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE-------------CCCCC----CCceEEEECCCCCEEEeccCCCeE
Confidence 9999999988887777788999998 55544321 01111 235677999998 44 44456889
Q ss_pred EEEECC
Q 000054 2537 KLIQLE 2542 (2548)
Q Consensus 2537 rIWDL~ 2542 (2548)
..|+..
T Consensus 254 ~~~~~~ 259 (300)
T 2qc5_A 254 GRITND 259 (300)
T ss_dssp EEECTT
T ss_pred EEECCC
Confidence 998874
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.58 E-value=4.2e-06 Score=106.71 Aligned_cols=270 Identities=11% Similarity=0.030 Sum_probs=165.1
Q ss_pred CCCCEEEEEEC-C----CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe----------CCC
Q 000054 2229 PLRPFFLVGSS-N----THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA----------LDG 2293 (2548)
Q Consensus 2229 PdG~~LASGS~-D----GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS----------~DG 2293 (2548)
|+++.+.+... + +.|.++|..+++.+.++.. + ..+ .++++|||++++++. .++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v--G--------~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~ 149 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG--G--------FLP--HPVAAEDGSFFAQASTVFERIARGKRTD 149 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE--C--------SSC--EEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC--C--------CCC--ceEECCCCCEEEEEeccccccccCCCCC
Confidence 45565554433 2 6999999999999988864 1 133 799999999988886 467
Q ss_pred cEEEEEcCCCcccccccCccceec-cCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEE
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCF-SSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSI 2372 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~-~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSL 2372 (2548)
.|.++|..+++.....+......+ .+....-..++|||++++++... .++.|.+.|+.+ .+.+..+.. ... .
T Consensus 150 ~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~-~~~~VsVID~~t--~kvv~~I~v--~g~--~ 222 (426)
T 3c75_H 150 YVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS-PAPAVGVVDLEG--KTFDRMLDV--PDC--Y 222 (426)
T ss_dssp EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS-SSCEEEEEETTT--TEEEEEEEC--CSE--E
T ss_pred EEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC-CCCeEEEEECCC--CeEEEEEEc--CCc--e
Confidence 999999998864432211000000 01111123589999999887411 267899999986 555555543 121 2
Q ss_pred EEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeec-CCCCCCCccccccccCCCCCC--ccCCCCCceEEEc
Q 000054 2373 SVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKH-SDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI 2449 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~-~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi 2449 (2548)
...|.. ...+++.+.||.+.+.|. .+++...... .......+......+.+++.. .....+.+.+.|.
T Consensus 223 ~~~p~g------~~~~v~~~~dG~~~~V~~---~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~ 293 (426)
T 3c75_H 223 HIFPAS------PTVFYMNCRDGSLARVDF---ADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADL 293 (426)
T ss_dssp EEEEEE------TTEEEEEETTSSEEEEEC---CTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEE
T ss_pred eeccCC------CcEEEEEcCCCCEEEEEC---CCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEec
Confidence 334442 357777888999888884 3344332110 001111122223345666553 3333455666664
Q ss_pred ccCC--------------------CCCEEEEEEeCCCCEEEEEeC----------CCcEEEEECCCCcEEEEeccccccc
Q 000054 2450 PKAH--------------------LGSVTRISTVPNTSLFLTGSK----------DGDVKLWDAKAAQLVYHWSKLHERH 2499 (2548)
Q Consensus 2450 ~~gH--------------------~~~VtsLafSPdG~~LaSGS~----------DGtIrIWDl~Tgell~tL~~~Hs~h 2499 (2548)
.... ......++++|+++.++.... ++.|.+.|..+++.+.+++-
T Consensus 294 ~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v----- 368 (426)
T 3c75_H 294 TAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL----- 368 (426)
T ss_dssp CSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-----
T ss_pred cCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC-----
Confidence 2110 011123789999887766642 35799999999999998831
Q ss_pred ccccCcccCCCCceeecEEEEEEcCCe---EEEEE-CCCcEEEEECCCCc
Q 000054 2500 TFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCG-GDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2500 sfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS-~DGtIrIWDL~sg~ 2545 (2548)
+ .....++|+|+| +++.. .+++|.++|+.++.
T Consensus 369 --------g------~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 369 --------G------HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp --------E------EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred --------C------CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 1 124677999998 55555 69999999998864
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.56 E-value=1.6e-05 Score=95.24 Aligned_cols=234 Identities=9% Similarity=0.072 Sum_probs=144.8
Q ss_pred EEEEEEcCC-CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPL-RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPd-G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
.-+..|+|+ +.++++...++.|..||..+++. ..+. ....+.+++++++|+++++ . ++.|.+||.
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-----------~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~ 80 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-----------MDAPVSSVALRQSGGYVAT-I-GTKFCALNW 80 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-----------CSSCEEEEEEBTTSSEEEE-E-TTEEEEEET
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-----------CCCceEEEEECCCCCEEEE-E-CCeEEEEEC
Confidence 357788895 45666777889999999988764 2322 1267999999999995544 4 568999999
Q ss_pred CCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccC------CCCeEEEEECCCCCCCcceeeeccCCCeEEE
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSS------NGINVVVWDTLAPPTSSRASITCHEGGARSI 2372 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS------~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSL 2372 (2548)
++++...+.... .......+. .++++|+++++..... ......+|.+... ++ ...+..+....+.+
T Consensus 81 ~~g~~~~~~~~~----~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~-~~~~~~~~~~pngi 154 (297)
T 3g4e_A 81 KEQSAVVLATVD----NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HH-VKKYFDQVDISNGL 154 (297)
T ss_dssp TTTEEEEEEECC----TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SC-EEEEEEEESBEEEE
T ss_pred CCCcEEEEEecC----CCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CC-EEEEeeccccccce
Confidence 876532211100 000112222 4789999777542100 0123445554421 22 22233444567899
Q ss_pred EEccCCCCCCCCCC-EEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc
Q 000054 2373 SVFDNDLGSGSVSP-LIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK 2451 (2548)
Q Consensus 2373 afsP~dlg~gs~g~-lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~ 2451 (2548)
+|+|+ ++ ++++.+.++.|.+||+. ..++..... +++..+.
T Consensus 155 ~~spd-------g~~lyv~~~~~~~i~~~~~d-~~~G~~~~~-------------------------------~~~~~~~ 195 (297)
T 3g4e_A 155 DWSLD-------HKIFYYIDSLSYSVDAFDYD-LQTGQISNR-------------------------------RSVYKLE 195 (297)
T ss_dssp EECTT-------SCEEEEEEGGGTEEEEEEEC-TTTCCEEEE-------------------------------EEEEECC
T ss_pred EEcCC-------CCEEEEecCCCCcEEEEecc-CCCCcccCc-------------------------------EEEEECC
Confidence 99998 55 55666778999999943 133432110 1111112
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEc-CCe---E
Q 000054 2452 AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVV-SRG---F 2527 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafS-PdG---L 2527 (2548)
.+.+....++++++|.+.++...++.|.+||..+|+.+.++. .+. ..+++++|. |++ +
T Consensus 196 ~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~--------------~p~----~~~t~~~f~g~d~~~L~ 257 (297)
T 3g4e_A 196 KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK--------------LPV----DKTTSCCFGGKNYSEMY 257 (297)
T ss_dssp GGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE--------------CSS----SBEEEEEEESGGGCEEE
T ss_pred CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE--------------CCC----CCceEEEEeCCCCCEEE
Confidence 234567889999999988888888899999999999988772 111 235788998 776 4
Q ss_pred EEEEC
Q 000054 2528 LSCGG 2532 (2548)
Q Consensus 2528 aSGS~ 2532 (2548)
+|...
T Consensus 258 vt~~~ 262 (297)
T 3g4e_A 258 VTCAR 262 (297)
T ss_dssp EEEBC
T ss_pred EEcCC
Confidence 45443
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.55 E-value=4.1e-06 Score=97.37 Aligned_cols=196 Identities=11% Similarity=0.103 Sum_probs=131.4
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
.+++++++|+++++.. ++.|.+||...... ..+.. .....+.+++++++|+.+++...++.|.+|+..+
T Consensus 70 ~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~---------~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 138 (270)
T 1rwi_B 70 QGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPF---------DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS 138 (270)
T ss_dssp CCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCC---------CSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC
T ss_pred ceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeec---------CCcCCCcceEECCCCCEEEEECCCCEEEEEECCC
Confidence 5677889999666655 88999999776543 22210 1125689999999999888777889999997654
Q ss_pred CcccccccCccceeccC-CcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000054 2303 GGRSNVRPMESCLCFSS-HAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~g-H~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
...... ...+ ....-.+++++|+++++.. .++.|.+||... .........+...+.++++.++
T Consensus 139 ~~~~~~-------~~~~~~~p~~i~~~~~g~l~v~~~---~~~~i~~~~~~~--~~~~~~~~~~~~~p~~i~~d~~---- 202 (270)
T 1rwi_B 139 KTQTVL-------PFTGLNDPDGVAVDNSGNVYVTDT---DNNRVVKLEAES--NNQVVLPFTDITAPWGIAVDEA---- 202 (270)
T ss_dssp CSCEEC-------CCCSCCSCCCEEECTTCCEEEEEG---GGTEEEEECTTT--CCEEECCCSSCCSEEEEEECTT----
T ss_pred ceeEee-------ccccCCCceeEEEeCCCCEEEEEC---CCCEEEEEecCC--CceEeecccCCCCceEEEECCC----
Confidence 322110 0111 1111235788998776653 578999999864 2222222233367899999887
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEE
Q 000054 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRIS 2461 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLa 2461 (2548)
+.+.++...++.|.+||.. ..... .. ...+...+.+++
T Consensus 203 ---g~l~v~~~~~~~v~~~~~~---~~~~~-~~-----------------------------------~~~~~~~p~~i~ 240 (270)
T 1rwi_B 203 ---GTVYVTEHNTNQVVKLLAG---STTST-VL-----------------------------------PFTGLNTPLAVA 240 (270)
T ss_dssp ---CCEEEEETTTSCEEEECTT---CSCCE-EC-----------------------------------CCCSCSCEEEEE
T ss_pred ---CCEEEEECCCCcEEEEcCC---CCcce-ee-----------------------------------ccCCCCCceeEE
Confidence 6678887788999999942 22111 11 012335688999
Q ss_pred EeCCCCEEEEEeCCCcEEEEECCCCc
Q 000054 2462 TVPNTSLFLTGSKDGDVKLWDAKAAQ 2487 (2548)
Q Consensus 2462 fSPdG~~LaSGS~DGtIrIWDl~Tge 2487 (2548)
++|+|+++++...++.|++++....+
T Consensus 241 ~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 241 VDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp ECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred ECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 99999999998999999999987554
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.5e-05 Score=100.96 Aligned_cols=263 Identities=11% Similarity=0.022 Sum_probs=155.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC--cEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG--TVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG--tVrVWD 2299 (2548)
...++++++++++++...++.|++||..++........ . .... ++|+++++.+++++.++ .|.+++
T Consensus 133 P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~----------~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d 200 (409)
T 3hrp_A 133 MWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-F----------KGGK-PAVTKDKQRVYSIGWEGTHTVYVYM 200 (409)
T ss_dssp EEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-C----------CBCB-CEECTTSSEEEEEBSSTTCEEEEEE
T ss_pred ceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-C----------CCCc-eeEecCCCcEEEEecCCCceEEEEE
Confidence 37888899999888888889999999988776555432 0 2223 89999999999998876 788888
Q ss_pred cCCCcccccccCcccee-ccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee-----eccCCCe-E-E
Q 000054 2300 LEVGGRSNVRPMESCLC-FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-----TCHEGGA-R-S 2371 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t-~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-----~gHs~~V-t-S 2371 (2548)
...+....... .... ...+... .+++|++..|+.+. .++.|..||.... . ...+ .++.... . .
T Consensus 201 ~~~~~~~~~~g--~~~~~~~~~p~~-iav~p~~g~lyv~d---~~~~I~~~d~~~~--~-~~~~~~~~~~g~~~~~P~~~ 271 (409)
T 3hrp_A 201 KASGWAPTRIG--QLGSTFSGKIGA-VALDETEEWLYFVD---SNKNFGRFNVKTQ--E-VTLIKQLELSGSLGTNPGPY 271 (409)
T ss_dssp GGGTTCEEEEE--ECCTTSCSCCCB-CEECTTSSEEEEEC---TTCEEEEEETTTC--C-EEEEEECCCCSCCCCSSCCE
T ss_pred cCCCceeEEee--eccchhcCCcEE-EEEeCCCCeEEEEE---CCCcEEEEECCCC--C-EEEEecccccCCCCCCcccc
Confidence 76553211110 0000 0111122 24788444444454 5789999998752 2 2222 1222222 3 8
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK 2451 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~ 2451 (2548)
++|+|++ +.++++-..++.|+.||.. ++ +..+..... . .+..++ ....
T Consensus 272 ia~~p~~------g~lyv~d~~~~~I~~~~~~----g~-~~~~~g~~~------------~----~g~~dg-----~~~~ 319 (409)
T 3hrp_A 272 LIYYFVD------SNFYMSDQNLSSVYKITPD----GE-CEWFCGSAT------------Q----KTVQDG-----LREE 319 (409)
T ss_dssp EEEETTT------TEEEEEETTTTEEEEECTT----CC-EEEEEECTT------------C----CSCBCE-----EGGG
T ss_pred EEEeCCC------CEEEEEeCCCCEEEEEecC----CC-EEEEEeCCC------------C----CCcCCC-----cccc
Confidence 9999964 6677777788999999943 22 222100000 0 000000 0001
Q ss_pred CCCCCEEEEEEeCCCCEEEEEe-CCCcEEEEECCCCcEEEEecccccccccccCcccCCC-CceeecEEEEEEcCCe--E
Q 000054 2452 AHLGSVTRISTVPNTSLFLTGS-KDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFG-GVVRAGVTDIQVVSRG--F 2527 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS-~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~-~~V~a~VtsLafSPdG--L 2527 (2548)
..-.....++++|+|+++++-+ .++.|+.||+.+++.. ++.+......+ ..|.. ..-......++++++| +
T Consensus 320 ~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~----~~g~~~~~~~~~P~giavd~~g~ly 394 (409)
T 3hrp_A 320 ALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQ----IDGTPLEATFNYPYDICYDGEGGYW 394 (409)
T ss_dssp CBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTCBSC----CCBSTTTCCBSSEEEEEECSSSEEE
T ss_pred cEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCc----CCCChhceEeCCceEEEEcCCCCEE
Confidence 2234578999999999888887 8899999998888754 33111000000 00100 0001235788999999 5
Q ss_pred EEEECCCcEEEEECC
Q 000054 2528 LSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2528 aSGS~DGtIrIWDL~ 2542 (2548)
++-..+++|+.++++
T Consensus 395 Vad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 395 IAEAWGKAIRKYAVE 409 (409)
T ss_dssp EEESTTCEEEEEEEC
T ss_pred EEECCCCeEEEEEeC
Confidence 677778888888763
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.2e-06 Score=110.35 Aligned_cols=178 Identities=10% Similarity=0.032 Sum_probs=119.8
Q ss_pred EEEEEEEcCCCCEEEEEECCCeEEEEEcCCCc-----------eeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE
Q 000054 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDK-----------ATATYGVLPAANVPPPYALASISALQFDHYGHRFASA 2289 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~-----------~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG 2289 (2548)
.+..+++++...++++|+.++ +++|++...+ ..... .+.+ |+.|+| +++.|+++
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-----------~lp~-V~~l~f--d~~~L~v~ 103 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-----------EIPD-VIFVCF--HGDQVLVS 103 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-----------ECTT-EEEEEE--ETTEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-----------eCCC-eeEEEE--CCCEEEEE
Confidence 357778889999999999985 5569976433 11111 1235 999999 99999999
Q ss_pred eCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe
Q 000054 2290 ALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA 2369 (2548)
Q Consensus 2290 S~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V 2369 (2548)
.+|.|++||+.+..... ....|...+..+.+-...++++. .||.|.+||+.. .... .+...|
T Consensus 104 -~~~~l~v~dv~sl~~~~--------~~~~~~~~v~~i~~~~p~~av~~---~dG~L~v~dl~~--~~~~----~~~~~V 165 (388)
T 1xip_A 104 -TRNALYSLDLEELSEFR--------TVTSFEKPVFQLKNVNNTLVILN---SVNDLSALDLRT--KSTK----QLAQNV 165 (388)
T ss_dssp -ESSEEEEEESSSTTCEE--------EEEECSSCEEEEEECSSEEEEEE---TTSEEEEEETTT--CCEE----EEEESE
T ss_pred -cCCcEEEEEchhhhccC--------ccceeecceeeEEecCCCEEEEE---CCCCEEEEEccC--Cccc----cccCCc
Confidence 88999999998654221 12223333443222222366664 899999999975 2222 245689
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCce--eeeecCCCCCCCccccccccCCCCCCccCCCCCceEE
Q 000054 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKT--KKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLW 2447 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~--l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iw 2447 (2548)
+|++|+|+ | ++.|..||++++|+ ...+.. ..++..+ +.
T Consensus 166 s~v~WSpk-------G--~~vg~~dg~i~~~~---~~~~~~~~k~~I~~P-----p~----------------------- 205 (388)
T 1xip_A 166 TSFDVTNS-------Q--LAVLLKDRSFQSFA---WRNGEMEKQFEFSLP-----SE----------------------- 205 (388)
T ss_dssp EEEEECSS-------E--EEEEETTSCEEEEE---EETTEEEEEEEECCC-----HH-----------------------
T ss_pred eEEEEcCC-------c--eEEEEcCCcEEEEc---CCCccccccceecCC-----cc-----------------------
Confidence 99999999 5 78899999999998 444443 3333100 00
Q ss_pred Ecc--cCCCCCEEEEEEeCCCCEEEEE
Q 000054 2448 YIP--KAHLGSVTRISTVPNTSLFLTG 2472 (2548)
Q Consensus 2448 di~--~gH~~~VtsLafSPdG~~LaSG 2472 (2548)
+. .+|...|.+|.|.+++.++++=
T Consensus 206 -~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 206 -LEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp -HHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred -cccccCCCeeEEEEEEecCCeEEEEE
Confidence 00 1477889999999999988873
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.9e-06 Score=99.79 Aligned_cols=198 Identities=9% Similarity=0.013 Sum_probs=126.6
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC---------
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD--------- 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D--------- 2292 (2548)
+.+++++|+|+++++...++.|.+||..+++.........+ .....+.+++++|+|+.+++.+.+
T Consensus 71 ~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~------~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~ 144 (296)
T 3e5z_A 71 QNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEG------KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGY 144 (296)
T ss_dssp EEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETT------EECCCCCCEEECTTSCEEEEECSHHHHCGGGSS
T ss_pred cceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCC------CCCCCCCCEEECCCCCEEEECCccccccccccc
Confidence 47889999999888877789999999988875443322111 112457789999999988874311
Q ss_pred ------CcEEEEEcCCCcccccccCccceeccCCccc--EEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCc---cee
Q 000054 2293 ------GTVCTWQLEVGGRSNVRPMESCLCFSSHAMD--VSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS---RAS 2361 (2548)
Q Consensus 2293 ------GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~--V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~---v~s 2361 (2548)
+.-.||.+....... ....+... -.+++|+|+.+++. +.++.|.+||+.. .++. ...
T Consensus 145 ~~~~~~~~~~l~~~~~~g~~~--------~~~~~~~~~~gi~~s~dg~~lv~~---~~~~~i~~~~~~~-~g~~~~~~~~ 212 (296)
T 3e5z_A 145 GGEMELPGRWVFRLAPDGTLS--------APIRDRVKPNGLAFLPSGNLLVSD---TGDNATHRYCLNA-RGETEYQGVH 212 (296)
T ss_dssp CCCCCSSSCEEEEECTTSCEE--------EEECCCSSEEEEEECTTSCEEEEE---TTTTEEEEEEECS-SSCEEEEEEE
T ss_pred cccccCCCcEEEEECCCCCEE--------EeecCCCCCccEEECCCCCEEEEe---CCCCeEEEEEECC-CCcCcCCCeE
Confidence 112445444322111 11122222 23589999988444 3788999999862 1332 223
Q ss_pred eeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCC
Q 000054 2362 ITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGD 2441 (2548)
Q Consensus 2362 l~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D 2441 (2548)
+..+.+.+.++++.++ +.+.++. ++.|.+||. . ++.+..+
T Consensus 213 ~~~~~~~p~~i~~d~~-------G~l~v~~--~~~v~~~~~---~-g~~~~~~--------------------------- 252 (296)
T 3e5z_A 213 FTVEPGKTDGLRVDAG-------GLIWASA--GDGVHVLTP---D-GDELGRV--------------------------- 252 (296)
T ss_dssp ECCSSSCCCSEEEBTT-------SCEEEEE--TTEEEEECT---T-SCEEEEE---------------------------
T ss_pred eeCCCCCCCeEEECCC-------CCEEEEc--CCeEEEECC---C-CCEEEEE---------------------------
Confidence 3335566778999888 6666655 889999993 2 5555444
Q ss_pred CCceEEEcccCCCCCEEEEEE-eCCCCEEEEEeCCCcEEEEECCCCcE
Q 000054 2442 QNGMLWYIPKAHLGSVTRIST-VPNTSLFLTGSKDGDVKLWDAKAAQL 2488 (2548)
Q Consensus 2442 ~sv~Iwdi~~gH~~~VtsLaf-SPdG~~LaSGS~DGtIrIWDl~Tgel 2488 (2548)
..+.. +++++| .|+++.|++++.++ +..++..++++
T Consensus 253 ---------~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 253 ---------LTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp ---------ECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred ---------ECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 33455 889999 58999898888764 44556665544
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=6.3e-05 Score=88.06 Aligned_cols=225 Identities=9% Similarity=0.016 Sum_probs=145.6
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEE
Q 000054 2271 LASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVV 2348 (2548)
Q Consensus 2271 ~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrI 2348 (2548)
...+.+++++++|+.+++...++.|.+||.. +...... ...+...+. +++++|.++++.. .++.|..
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~-------~~~~~~~~~~i~~~~~g~l~v~~~---~~~~i~~ 82 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYP-------LPTPDAKVMCLTISSDGEVWFTEN---AANKIGR 82 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEE-------CSSTTCCEEEEEECTTSCEEEEET---TTTEEEE
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEec-------CCcccCceeeEEECCCCCEEEeCC---CCCeEEE
Confidence 3679999999999988777778999999987 5322111 111222333 4778998887763 5788999
Q ss_pred EECCCCCCCcceeee--ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000054 2349 WDTLAPPTSSRASIT--CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2349 WDl~t~~~k~v~sl~--gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
||... + ...+. .....+.++++.++ +.+.++...++.|..||. +++..... ... ......
T Consensus 83 ~~~~g---~-~~~~~~~~~~~~~~~i~~~~~-------g~l~v~~~~~~~i~~~d~----~g~~~~~~-~~~--~~~~~~ 144 (299)
T 2z2n_A 83 ITKKG---I-IKEYTLPNPDSAPYGITEGPN-------GDIWFTEMNGNRIGRITD----DGKIREYE-LPN--KGSYPS 144 (299)
T ss_dssp ECTTS---C-EEEEECSSTTCCEEEEEECTT-------SCEEEEETTTTEEEEECT----TCCEEEEE-CSS--TTCCEE
T ss_pred ECCCC---c-EEEEeCCCcCCCceeeEECCC-------CCEEEEecCCceEEEECC----CCCEEEec-CCC--CCCCCc
Confidence 99752 2 22222 34567899999887 667777777899999993 34433221 111 112334
Q ss_pred ccccCCCCCC-ccC-CCCCceEEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccc
Q 000054 2427 AHADAQTGSG-SKP-GDQNGMLWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLH 2496 (2548)
Q Consensus 2427 ~vafSpdGk~-v~s-~D~sv~Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~H 2496 (2548)
.+++.++|++ ++. .++.+..++. ...+...+.+++++++|.+.++...++.|.+||. +++... +.
T Consensus 145 ~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~--- 219 (299)
T 2z2n_A 145 FITLGSDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FK--- 219 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EE---
T ss_pred eEEEcCCCCEEEEeCCCCEEEEEcCCCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EE---
Confidence 5677778776 322 2344555543 1123456889999999998887777889999999 776443 21
Q ss_pred cccccccCcccCCCCceeecEEEEEEcCCe-EE-EEECCCcEEEEECC
Q 000054 2497 ERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FL-SCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2497 s~hsfl~~tl~GH~~~V~a~VtsLafSPdG-La-SGS~DGtIrIWDL~ 2542 (2548)
...+. ..+.+++++++| +. +...++.|..||..
T Consensus 220 ---------~~~~~----~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 220 ---------IPTPN----ARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp ---------CSSTT----CCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred ---------CCCCC----CCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 11121 235678999998 54 44467889999973
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.1e-05 Score=98.48 Aligned_cols=206 Identities=7% Similarity=0.050 Sum_probs=133.1
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe--CCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA--LDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS--~DGtVrVWD 2299 (2548)
...+++++++..+++...++.|.+||..+++....+..-.. .++......+++ ++..++++. .++.|.++|
T Consensus 86 p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~-----~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD 158 (328)
T 3dsm_A 86 PRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM-----DMESGSTEQMVQ--YGKYVYVNCWSYQNRILKID 158 (328)
T ss_dssp EEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC-----CTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEE
T ss_pred CcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc-----cccCCCcceEEE--ECCEEEEEcCCCCCEEEEEE
Confidence 36777878886555555899999999999988777653110 011123455666 345555554 489999999
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCC----------CeEEEEECCCCCCCcceeeecc-CCC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG----------INVVVWDTLAPPTSSRASITCH-EGG 2368 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~D----------GtVrIWDl~t~~~k~v~sl~gH-s~~ 2368 (2548)
.++++.....+ ....... ..++++|++++++. .+ +.|.++|..+ .+....+... ...
T Consensus 159 ~~t~~~~~~i~------~g~~p~~-i~~~~dG~l~v~~~---~~~~~~~~~~~~~~v~~id~~t--~~v~~~~~~~~g~~ 226 (328)
T 3dsm_A 159 TETDKVVDELT------IGIQPTS-LVMDKYNKMWTITD---GGYEGSPYGYEAPSLYRIDAET--FTVEKQFKFKLGDW 226 (328)
T ss_dssp TTTTEEEEEEE------CSSCBCC-CEECTTSEEEEEBC---CBCTTCSSCBCCCEEEEEETTT--TEEEEEEECCTTCC
T ss_pred CCCCeEEEEEE------cCCCccc-eEEcCCCCEEEEEC---CCccCCccccCCceEEEEECCC--CeEEEEEecCCCCC
Confidence 99876433211 1111122 24788998777653 33 7899999875 4444444422 246
Q ss_pred eEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEE
Q 000054 2369 ARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWY 2448 (2548)
Q Consensus 2369 VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwd 2448 (2548)
...++++|+ +..+.++.. .|.+|| ..+++.....
T Consensus 227 p~~la~~~d-------~~~lyv~~~--~v~~~d---~~t~~~~~~~---------------------------------- 260 (328)
T 3dsm_A 227 PSEVQLNGT-------RDTLYWINN--DIWRMP---VEADRVPVRP---------------------------------- 260 (328)
T ss_dssp CEEEEECTT-------SCEEEEESS--SEEEEE---TTCSSCCSSC----------------------------------
T ss_pred ceeEEEecC-------CCEEEEEcc--EEEEEE---CCCCceeeee----------------------------------
Confidence 899999998 556666544 899999 4444432110
Q ss_pred cccCCCCCEEEEEEeC-CCCEEEEE----eCCCcEEEEECCCCcEEEEec
Q 000054 2449 IPKAHLGSVTRISTVP-NTSLFLTG----SKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2449 i~~gH~~~VtsLafSP-dG~~LaSG----S~DGtIrIWDl~Tgell~tL~ 2493 (2548)
....+......++++| ++.++++. ..++.|.+||.. |+.+.+++
T Consensus 261 ~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 261 FLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp SBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred eecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 0011235678999999 56677776 678999999998 99988874
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00012 Score=85.67 Aligned_cols=232 Identities=9% Similarity=0.048 Sum_probs=149.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.+++++++|.++++...++.|..+|.. ++. ..+.. + .....+.++++.++|+.+++...++.|..+|..
T Consensus 64 ~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~-~~~~~-~-------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 133 (300)
T 2qc5_A 64 VMCLIVSSLGDIWFTENGANKIGKLSKK-GGF-TEYPL-P-------QPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD 133 (300)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEEC-S-------STTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred ceeEEECCCCCEEEEecCCCeEEEECCC-CCe-EEecC-C-------CCCCCCccceECCCCCEEEEccCCCeEEEECCC
Confidence 4778888999988887778899999987 554 33321 1 112568999999999988887778899999987
Q ss_pred CCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcce-eeeccCCCeEEEEEccCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA-SITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~-sl~gHs~~VtSLafsP~d 2378 (2548)
++..... .......+. ++.++|+++++.. .++.|..+|.. ++... ....+...+..+++.++
T Consensus 134 -g~~~~~~-------~~~~~~~~~~i~~d~~g~l~v~~~---~~~~i~~~~~~---g~~~~~~~~~~~~~~~~i~~d~~- 198 (300)
T 2qc5_A 134 -GTIYEYD-------LPNKGSYPAFITLGSDNALWFTEN---QNNSIGRITNT---GKLEEYPLPTNAAAPVGITSGND- 198 (300)
T ss_dssp -SCEEEEE-------CSSTTCCEEEEEECTTSSEEEEET---TTTEEEEECTT---CCEEEEECSSTTCCEEEEEECTT-
T ss_pred -CCEEEcc-------CCCCCCCceeEEECCCCCEEEEec---CCCeEEEECCC---CcEEEeeCCCCCCCcceEEECCC-
Confidence 4322110 111122222 4788898666652 57889999983 23222 22234457889999887
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEE
Q 000054 2379 LGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVT 2458 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vt 2458 (2548)
+.+.++....+.|.+||. +++..... ...+...+.
T Consensus 199 ------g~l~v~~~~~~~i~~~~~----~g~~~~~~-----------------------------------~~~~~~~~~ 233 (300)
T 2qc5_A 199 ------GALWFVEIMGNKIGRITT----TGEISEYD-----------------------------------IPTPNARPH 233 (300)
T ss_dssp ------SSEEEEETTTTEEEEECT----TCCEEEEE-----------------------------------CSSTTCCEE
T ss_pred ------CCEEEEccCCCEEEEEcC----CCcEEEEE-----------------------------------CCCCCCCce
Confidence 667777667788999993 23322211 022345678
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEE
Q 000054 2459 RISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVK 2537 (2548)
Q Consensus 2459 sLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIr 2537 (2548)
+++++++|++.++...++.|.+||. +++.. .+. +.... ..+.+++++++| +..++.. .|.
T Consensus 234 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~------------~~~~~----~~~~~i~~~~~g~l~v~~~~-~i~ 294 (300)
T 2qc5_A 234 AITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQ------------LQTEN----AEPHGITFGKDGSVWFALKC-KIG 294 (300)
T ss_dssp EEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEE------------CCSTT----CCCCCEEECTTSCEEEECSS-EEE
T ss_pred EEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEE------------CCccC----CccceeEeCCCCCEEEEccC-ceE
Confidence 9999999998777767899999998 45543 221 01111 123556899999 6655554 666
Q ss_pred EEECC
Q 000054 2538 LIQLE 2542 (2548)
Q Consensus 2538 IWDL~ 2542 (2548)
.++.+
T Consensus 295 ~~~p~ 299 (300)
T 2qc5_A 295 KLNLN 299 (300)
T ss_dssp EEEEC
T ss_pred EeCCC
Confidence 66643
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.38 E-value=7.3e-06 Score=98.26 Aligned_cols=187 Identities=9% Similarity=0.086 Sum_probs=130.9
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCc---ccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCc
Q 000054 2282 YGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHA---MDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS 2358 (2548)
Q Consensus 2282 dG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~---~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~ 2358 (2548)
.++.|++++.|+.|.+||.++|+.+.. +..+. ..-..+.|+|+++++ .++.|..||. + ++.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~--------~~~~~~~~~~~~~~~pdG~ilvs-----~~~~V~~~d~-~--G~~ 67 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWE--------YPLEKGWECNSVAATKAGEILFS-----YSKGAKMITR-D--GRE 67 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEE--------EECCTTCCCCEEEECTTSCEEEE-----CBSEEEEECT-T--SCE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEE--------eCCCccCCCcCeEECCCCCEEEe-----CCCCEEEECC-C--CCE
Confidence 467899999999999999988875432 22221 112247899999884 4678999998 4 567
Q ss_pred ceeeeccC-CCeEEEEEccCCCCCCCCCCEEEEEeC-CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC
Q 000054 2359 RASITCHE-GGARSISVFDNDLGSGSVSPLIVTGGK-GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG 2436 (2548)
Q Consensus 2359 v~sl~gHs-~~VtSLafsP~dlg~gs~g~lLVSGS~-DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~ 2436 (2548)
+..+..+. ..+.++.+.++ +.++++.+. ++.|..+| . +|+.+..+.....
T Consensus 68 ~W~~~~~~~~~~~~~~~~~d-------G~~lv~~~~~~~~v~~vd---~-~Gk~l~~~~~~~~----------------- 119 (276)
T 3no2_A 68 LWNIAAPAGCEMQTARILPD-------GNALVAWCGHPSTILEVN---M-KGEVLSKTEFETG----------------- 119 (276)
T ss_dssp EEEEECCTTCEEEEEEECTT-------SCEEEEEESTTEEEEEEC---T-TSCEEEEEEECCS-----------------
T ss_pred EEEEcCCCCccccccEECCC-------CCEEEEecCCCCEEEEEe---C-CCCEEEEEeccCC-----------------
Confidence 77776543 47888888888 788888877 77777777 2 5666655411000
Q ss_pred ccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeec
Q 000054 2437 SKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAG 2516 (2548)
Q Consensus 2437 v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~ 2516 (2548)
..++......+++.++|+++++...++.|..||.. |+.+.++. ... .
T Consensus 120 -------------~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~--------------~~~-----~ 166 (276)
T 3no2_A 120 -------------IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVK--------------LSG-----T 166 (276)
T ss_dssp -------------CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEE--------------CSS-----C
T ss_pred -------------CCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEE--------------CCC-----C
Confidence 01122234456788999999999999999999998 99998873 111 1
Q ss_pred EEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2517 VTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2517 VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+.++...++| +++++.++.|..+|.++|.
T Consensus 167 ~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 167 PFSSAFLDNGDCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp CCEEEECTTSCEEEECBTTSEEEEECTTTCC
T ss_pred ccceeEcCCCCEEEEeCCCCeEEEEeCcCCc
Confidence 2234677888 6677777789999988664
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.7e-05 Score=107.38 Aligned_cols=235 Identities=10% Similarity=-0.019 Sum_probs=136.2
Q ss_pred CCCCEEEEEECCCe---EEEEEcC-----CCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC-----CcE
Q 000054 2229 PLRPFFLVGSSNTH---IYLWEFG-----KDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD-----GTV 2295 (2548)
Q Consensus 2229 PdG~~LASGS~DGs---VrLWDl~-----tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D-----GtV 2295 (2548)
|+|++++....++. -.+|... .++....+.... -...|...+..++|+|||++|+.+..+ .+|
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~----l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i 191 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNT----WAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTV 191 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGG----CC----EEEEEEEECTTSSEEEEEEEETTCSEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHH----hccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEE
Confidence 78888886544332 4556543 333222221100 011122468899999999999887654 369
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCC--------------eEEEEECCCCCCCccee
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGI--------------NVVVWDTLAPPTSSRAS 2361 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DG--------------tVrIWDl~t~~~k~v~s 2361 (2548)
++||+.+++.... ........-.+|+|| +.|+.+. .++ .|++|++.++.......
T Consensus 192 ~v~dl~tg~~~~~-------~~~~~~~~~~~wspD-~~l~~~~---~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv 260 (741)
T 1yr2_A 192 KFVGVADGKPLAD-------ELKWVKFSGLAWLGN-DALLYSR---FAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPV 260 (741)
T ss_dssp EEEETTTCCEEEE-------EEEEEESCCCEESTT-SEEEEEE---CCCC--------CCCCCEEEEEETTSCGGGCEEE
T ss_pred EEEECCCCCCCCc-------cCCCceeccEEEECC-CEEEEEE---ecCcccccccccCCCCCEEEEEECCCCchhCEEE
Confidence 9999998864321 011110011258999 8888775 333 48999987532212223
Q ss_pred ee--ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCC-----cEEEEeCCccccC--ceeeeecCCCCCCCccccccccCC
Q 000054 2362 IT--CHEGGARSISVFDNDLGSGSVSPLIVTGGKGG-----DVGIHDFRYIATG--KTKKHKHSDRGGSSINTCAHADAQ 2432 (2548)
Q Consensus 2362 l~--gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DG-----tVrLWDLR~l~TG--k~l~tl~~~~~~s~~~~~~vafSp 2432 (2548)
+. .|...+.++.|+|+ |++|+..+.++ .|.+||+ .++ ++...+
T Consensus 261 ~~~~~~~~~~~~~~~SpD-------G~~l~~~~~~~~~~~~~l~~~d~---~~~~~~~~~~l------------------ 312 (741)
T 1yr2_A 261 FATPELPKRGHGASVSSD-------GRWVVITSSEGTDPVNTVHVARV---TNGKIGPVTAL------------------ 312 (741)
T ss_dssp ECCTTCTTCEEEEEECTT-------SCEEEEEEECTTCSCCEEEEEEE---ETTEECCCEEE------------------
T ss_pred eccCCCCeEEEEEEECCC-------CCEEEEEEEccCCCcceEEEEEC---CCCCCcccEEe------------------
Confidence 32 33346889999998 77777776544 8999994 333 212222
Q ss_pred CCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCC----CcEEEEECCCCc-EEEEecccccccccccCccc
Q 000054 2433 TGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKD----GDVKLWDAKAAQ-LVYHWSKLHERHTFLQPSSR 2507 (2548)
Q Consensus 2433 dGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~D----GtIrIWDl~Tge-ll~tL~~~Hs~hsfl~~tl~ 2507 (2548)
..+...+... ++|+|+.|+..+.+ +.|.+||+.++. ....+ +.
T Consensus 313 ------------------~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l-------------~~ 360 (741)
T 1yr2_A 313 ------------------IPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTV-------------VP 360 (741)
T ss_dssp ------------------ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEE-------------EC
T ss_pred ------------------cCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEE-------------ec
Confidence 1223333344 34888888877763 459999998752 33333 12
Q ss_pred CCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECC
Q 000054 2508 GFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2508 GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~ 2542 (2548)
++... +.+++++.+. +++...||..++|.++
T Consensus 361 ~~~~~----l~~~~~~~~~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 361 ESKDN----LESVGIAGNRLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp CCSSE----EEEEEEEBTEEEEEEEETTEEEEEEEE
T ss_pred CCCCe----EEEEEEECCEEEEEEEECCEEEEEEEe
Confidence 23322 3455777444 6788889988777654
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.34 E-value=9.1e-06 Score=102.43 Aligned_cols=178 Identities=16% Similarity=0.131 Sum_probs=122.6
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccccc---ccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeE
Q 000054 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNV---RPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i---~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtV 2346 (2548)
..++.+++++...++++|+.|+.+ +|++........ ....... ...+.. |.. | +++.++++ .++.|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~-v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f--d~~~L~v~----~~~~l 108 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAV-VGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF--HGDQVLVS----TRNAL 108 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEE-EEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE--ETTEEEEE----ESSEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEE-EEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE--CCCEEEEE----cCCcE
Confidence 468999999999999999998555 599764321000 0011111 112333 553 5 88999987 57999
Q ss_pred EEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000054 2347 VVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2347 rIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
++||++. .........|...+.++.+.+. .+++++.||.|.+||+. ++....
T Consensus 109 ~v~dv~s--l~~~~~~~~~~~~v~~i~~~~p---------~~av~~~dG~L~v~dl~---~~~~~~-------------- 160 (388)
T 1xip_A 109 YSLDLEE--LSEFRTVTSFEKPVFQLKNVNN---------TLVILNSVNDLSALDLR---TKSTKQ-------------- 160 (388)
T ss_dssp EEEESSS--TTCEEEEEECSSCEEEEEECSS---------EEEEEETTSEEEEEETT---TCCEEE--------------
T ss_pred EEEEchh--hhccCccceeecceeeEEecCC---------CEEEEECCCCEEEEEcc---CCcccc--------------
Confidence 9999986 3344456677888988887655 48889999999999953 333321
Q ss_pred ccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcE--EEEecccccccccccC
Q 000054 2427 AHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQL--VYHWSKLHERHTFLQP 2504 (2548)
Q Consensus 2427 ~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgel--l~tL~~~Hs~hsfl~~ 2504 (2548)
+...|+|++|+|+| ++.|..||++++|+...++. ..+++.. .
T Consensus 161 --------------------------~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~P----p---- 204 (388)
T 1xip_A 161 --------------------------LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLP----S---- 204 (388)
T ss_dssp --------------------------EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCC----H----
T ss_pred --------------------------ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCC----c----
Confidence 33589999999999 67899999999999887775 5566311 1
Q ss_pred ccc---CCCCceeecEEEEEEcCCe
Q 000054 2505 SSR---GFGGVVRAGVTDIQVVSRG 2526 (2548)
Q Consensus 2505 tl~---GH~~~V~a~VtsLafSPdG 2526 (2548)
.+. +|. ..|.+|.|.+++
T Consensus 205 ~~~~~~~~~----~~V~sI~wl~~~ 225 (388)
T 1xip_A 205 ELEELPVEE----YSPLSVTILSPQ 225 (388)
T ss_dssp HHHTSCTTT----SEEEEEEESSSS
T ss_pred ccccccCCC----eeEEEEEEecCC
Confidence 011 243 336788999988
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00012 Score=89.10 Aligned_cols=230 Identities=10% Similarity=0.031 Sum_probs=138.2
Q ss_pred EEEEEcCCC-CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2223 RAFSSHPLR-PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2223 ~~VsfSPdG-~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
.+..|+|++ .+++++..++.|..||..+++.. .+.. ...+.+++|+++|+++++. .+ .|.+||..
T Consensus 52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-----------~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~ 117 (326)
T 2ghs_A 52 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL-----------PFMGSALAKISDSKQLIAS-DD-GLFLRDTA 117 (326)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-----------SSCEEEEEEEETTEEEEEE-TT-EEEEEETT
T ss_pred cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEC-----------CCcceEEEEeCCCeEEEEE-CC-CEEEEECC
Confidence 567888975 45667777899999999877543 2221 1569999999999877654 44 48899988
Q ss_pred CCcccccccCccceeccCCcccEE--EEcCCCCEEEEEecc-C--CCCeEEEEECCCCCCCcceeeeccCCCeEEEEEcc
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHS-S--NGINVVVWDTLAPPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~S-S--~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
+++........ .......+. .++++|+++++.... . ..+.|..+| . ++. ..+..+......++|+|
T Consensus 118 ~g~~~~~~~~~----~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~--g~~-~~~~~~~~~~~~i~~s~ 188 (326)
T 2ghs_A 118 TGVLTLHAELE----SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--K--GKV-TKLFADISIPNSICFSP 188 (326)
T ss_dssp TCCEEEEECSS----TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--T--TEE-EEEEEEESSEEEEEECT
T ss_pred CCcEEEEeeCC----CCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--C--CcE-EEeeCCCcccCCeEEcC
Confidence 77532211100 001112333 478999977654200 0 124555555 2 332 22333345678899999
Q ss_pred CCCCCCCCCCEE-EEEeCCCcEEEEeCCccccC-ceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000054 2377 NDLGSGSVSPLI-VTGGKGGDVGIHDFRYIATG-KTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2377 ~dlg~gs~g~lL-VSGS~DGtVrLWDLR~l~TG-k~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
+ ++.+ ++.+.++.|.+||+. ..++ .... .+++..+....
T Consensus 189 d-------g~~lyv~~~~~~~I~~~d~~-~~~Gl~~~~-------------------------------~~~~~~~~~~~ 229 (326)
T 2ghs_A 189 D-------GTTGYFVDTKVNRLMRVPLD-ARTGLPTGK-------------------------------AEVFIDSTGIK 229 (326)
T ss_dssp T-------SCEEEEEETTTCEEEEEEBC-TTTCCBSSC-------------------------------CEEEEECTTSS
T ss_pred C-------CCEEEEEECCCCEEEEEEcc-cccCCcccC-------------------------------ceEEEECCCCC
Confidence 8 5544 555667899999953 0123 1100 01111112233
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEc-CCe--E-EEE
Q 000054 2455 GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVV-SRG--F-LSC 2530 (2548)
Q Consensus 2455 ~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafS-PdG--L-aSG 2530 (2548)
.....++++++|.+.++...++.|.+||. +++.+..+. .+. ..+++++|+ |++ | ++.
T Consensus 230 ~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~--------------~~~----~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 230 GGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE--------------VPG----KQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp SEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE--------------CSC----SBEEEEEEESTTSCEEEEEE
T ss_pred CCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE--------------CCC----CCcEEEEEecCCCCEEEEEe
Confidence 45678999999998888777889999998 677776552 111 135778998 876 4 444
Q ss_pred ECC
Q 000054 2531 GGD 2533 (2548)
Q Consensus 2531 S~D 2533 (2548)
..+
T Consensus 291 ~~~ 293 (326)
T 2ghs_A 291 ARE 293 (326)
T ss_dssp BCT
T ss_pred cCC
Confidence 444
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.30 E-value=4.4e-05 Score=90.60 Aligned_cols=199 Identities=12% Similarity=0.147 Sum_probs=125.2
Q ss_pred EEEEEEcCC-CCEEEEEECCCeEEEEEcCCCceeEE-EeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC-------
Q 000054 2222 TRAFSSHPL-RPFFLVGSSNTHIYLWEFGKDKATAT-YGVLPAANVPPPYALASISALQFDHYGHRFASAALD------- 2292 (2548)
Q Consensus 2222 V~~VsfSPd-G~~LASGS~DGsVrLWDl~tg~~l~t-~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D------- 2292 (2548)
+.++.++++ |+++++.. ++.|.+||.. ++.... ... . .......+.+++++++|+.+++...+
T Consensus 73 ~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~-~-----~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 144 (314)
T 1pjx_A 73 PAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKD-S-----EGRRMQGCNDCAFDYEGNLWITAPAGEVAPADY 144 (314)
T ss_dssp EEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBC-T-----TSCBCBCCCEEEECTTSCEEEEECBCBCTTSCC
T ss_pred CceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEecc-C-----CCccccCCcCEEECCCCCEEEEecCcccccccc
Confidence 478888999 76555544 4478999988 654322 111 0 01122468899999999988777655
Q ss_pred --------CcEEEEEcCCCcccccccCccceeccCCcccEEEEc----CCCCEEEEEeccCCCCeEEEEECCCCCCC---
Q 000054 2293 --------GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYIT----SSGSVIAAAGHSSNGINVVVWDTLAPPTS--- 2357 (2548)
Q Consensus 2293 --------GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afS----pdGslLATgG~SS~DGtVrIWDl~t~~~k--- 2357 (2548)
+.|..|+.. ++.... ......... .+++ ++++.+..+. +.++.|.+||... .++
T Consensus 145 ~~~~~~~~~~l~~~~~~-g~~~~~------~~~~~~~~~-i~~~~~~d~dg~~l~v~~--~~~~~i~~~~~~~-~g~~~~ 213 (314)
T 1pjx_A 145 TRSMQEKFGSIYCFTTD-GQMIQV------DTAFQFPNG-IAVRHMNDGRPYQLIVAE--TPTKKLWSYDIKG-PAKIEN 213 (314)
T ss_dssp CBTTSSSCEEEEEECTT-SCEEEE------EEEESSEEE-EEEEECTTSCEEEEEEEE--TTTTEEEEEEEEE-TTEEEE
T ss_pred cccccCCCCeEEEECCC-CCEEEe------ccCCCCcce-EEEecccCCCCCEEEEEE--CCCCeEEEEECCC-CCcccc
Confidence 456666554 321111 000111112 2467 8887666554 3678999999752 122
Q ss_pred --cceeeeccC-CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCC
Q 000054 2358 --SRASITCHE-GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTG 2434 (2548)
Q Consensus 2358 --~v~sl~gHs-~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdG 2434 (2548)
....+..+. ..+..+++.++ +.+.++...++.|.+|| ..+++.+..+
T Consensus 214 ~~~~~~~~~~~~~~p~~i~~d~~-------G~l~v~~~~~~~i~~~d---~~~g~~~~~~-------------------- 263 (314)
T 1pjx_A 214 KKVWGHIPGTHEGGADGMDFDED-------NNLLVANWGSSHIEVFG---PDGGQPKMRI-------------------- 263 (314)
T ss_dssp EEEEEECCCCSSCEEEEEEEBTT-------CCEEEEEETTTEEEEEC---TTCBSCSEEE--------------------
T ss_pred ceEEEECCCCCCCCCCceEECCC-------CCEEEEEcCCCEEEEEc---CCCCcEeEEE--------------------
Confidence 222333443 56888999887 67888887889999999 4444443333
Q ss_pred CCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEE-EEEeCCCcEEEEECCC
Q 000054 2435 SGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLF-LTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2435 k~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~L-aSGS~DGtIrIWDl~T 2485 (2548)
..+...+.+++|+|+++.| ++...++.|..|++..
T Consensus 264 ----------------~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 264 ----------------RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp ----------------ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred ----------------eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 2344678999999999954 5555678999999874
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=2.4e-05 Score=98.02 Aligned_cols=257 Identities=11% Similarity=-0.025 Sum_probs=151.5
Q ss_pred EEEEEECCC----eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe----------CCCcEEEE
Q 000054 2233 FFLVGSSNT----HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA----------LDGTVCTW 2298 (2548)
Q Consensus 2233 ~LASGS~DG----sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS----------~DGtVrVW 2298 (2548)
.+++-..++ +|.+.|..+++.+.++..- ..+ .+.++||+++++++. .+++|.+|
T Consensus 34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG----------~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~Vsvi 101 (368)
T 1mda_H 34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGA----------FLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVF 101 (368)
T ss_dssp EEEEECTTTCSSEEEEEEETTTTEEEEEEEEC----------TTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEE
T ss_pred EEEECCccCCccceEEEEECCCCeEEEEEeCC----------CCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEE
Confidence 344444444 8889999999999887541 133 799999999999886 37899999
Q ss_pred EcCCCcccccccCc-cceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEE--EECCCCCCCcceeeeccCCCeEEEEEc
Q 000054 2299 QLEVGGRSNVRPME-SCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVV--WDTLAPPTSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~-s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrI--WDl~t~~~k~v~sl~gHs~~VtSLafs 2375 (2548)
|..+++.....+.. ......+....-..++|||++++++... .+..|.+ +|+.+ +..+.. ... +...
T Consensus 102 D~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~-~~~~v~V~~iD~~t-----v~~i~v--~~~--~~~~ 171 (368)
T 1mda_H 102 DPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG-SSAAAGLSVPGASD-----DQLTKS--ASC--FHIH 171 (368)
T ss_dssp CTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS-SSCEEEEEETTTEE-----EEEEEC--SSC--CCCE
T ss_pred ECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccC-CCCeEEEEEEchhh-----ceEEEC--CCc--eEEc
Confidence 99988654322110 0000011222334689999988887421 2467888 88853 333321 111 1123
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCcccc-----Cceeeeec-CCCCCCCccccccccCCCC-CC-ccCCCCCceEE
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIAT-----GKTKKHKH-SDRGGSSINTCAHADAQTG-SG-SKPGDQNGMLW 2447 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~T-----Gk~l~tl~-~~~~~s~~~~~~vafSpdG-k~-v~s~D~sv~Iw 2447 (2548)
|+. ...+++.+.||.+.+.|+ .+ ++...... .......+. + .+++ .+ .... +.+.+.
T Consensus 172 p~g------~~~~~~~~~dg~~~~vd~---~~~~~~~~~v~~~~t~~i~vg~~P~----~-~~~~~~~~~vs~-~~V~vi 236 (368)
T 1mda_H 172 PGA------AATHYLGSCPASLAASDL---AAAPAAAGIVGAQCTGAQNCSSQAA----Q-ANYPGMLVWAVA-SSILQG 236 (368)
T ss_dssp EEE------TTEEECCCCTTSCEEEEC---CSSCCCCEECCCCSCTTSCBCSCCE----E-ETTTTEEEECBS-SCCEEE
T ss_pred cCC------CeEEEEEcCCCCEEEEEC---ccccccCCeEEEEeeeeeeCCCCcc----c-cccCCEEEEEcC-CEEEEE
Confidence 442 346667778888888884 33 22211100 000001111 2 2332 22 2223 556555
Q ss_pred EcccCC--------------------CCCEEEEEEeCCCCEEEEEeC---------CCcEEEEECCCCcEEEEecccccc
Q 000054 2448 YIPKAH--------------------LGSVTRISTVPNTSLFLTGSK---------DGDVKLWDAKAAQLVYHWSKLHER 2498 (2548)
Q Consensus 2448 di~~gH--------------------~~~VtsLafSPdG~~LaSGS~---------DGtIrIWDl~Tgell~tL~~~Hs~ 2498 (2548)
|..... ......++++|+++.++.+.. ++.+.++|+.+++.+.+++
T Consensus 237 D~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~----- 311 (368)
T 1mda_H 237 DIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS----- 311 (368)
T ss_dssp ECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-----
T ss_pred ECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE-----
Confidence 542110 011112789999988876543 2356699999999998773
Q ss_pred cccccCcccCCCCceeecEEEEEEcCCe---EEEEE-CCCcEEEEECCCCc
Q 000054 2499 HTFLQPSSRGFGGVVRAGVTDIQVVSRG---FLSCG-GDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2499 hsfl~~tl~GH~~~V~a~VtsLafSPdG---LaSGS-~DGtIrIWDL~sg~ 2545 (2548)
-| .....++++||| +++.. .+++|.++|+.++.
T Consensus 312 --------vg------~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 312 --------NG------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp --------EE------EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred --------CC------CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 11 124677999998 66777 69999999998864
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00015 Score=90.81 Aligned_cols=79 Identities=8% Similarity=-0.155 Sum_probs=57.8
Q ss_pred EEEEcCCCCEEEEEE----------CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC--
Q 000054 2224 AFSSHPLRPFFLVGS----------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-- 2291 (2548)
Q Consensus 2224 ~VsfSPdG~~LASGS----------~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-- 2291 (2548)
.+.++|||+++.++. .++.|.+||..+.+.+..+...... + ..+...-..++|+|||++|+++..
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~--~-~~~g~~p~~~~~spDG~~l~v~n~~~ 146 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAP--R-FDVGPYSWMNANTPNNADLLFFQFAA 146 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcc--c-cccCCCccceEECCCCCEEEEEecCC
Confidence 678889999988875 3678999999998888776532000 0 001123458999999999999874
Q ss_pred CCcEEEEEcCCCccc
Q 000054 2292 DGTVCTWQLEVGGRS 2306 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i 2306 (2548)
+++|.++| .+++..
T Consensus 147 ~~~v~viD-~t~~~~ 160 (373)
T 2mad_H 147 GPAVGLVV-QGGSSD 160 (373)
T ss_pred CCeEEEEE-CCCCEE
Confidence 47899999 887644
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.23 E-value=7.3e-05 Score=91.70 Aligned_cols=249 Identities=8% Similarity=0.034 Sum_probs=138.5
Q ss_pred EEEEEEcCCCCEEEEEE--CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC-----CCc
Q 000054 2222 TRAFSSHPLRPFFLVGS--SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-----DGT 2294 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS--~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-----DGt 2294 (2548)
...++++|+|+++++.. .++.++||.+.+++ +..+ +........|...+..|+++++++.+++-.. ++.
T Consensus 19 p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~---p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 19 PGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPF---PPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp EEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEES---CCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred cceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecC---CCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 57888999999998864 23436677766553 3332 1110012245678999999999886665443 579
Q ss_pred EEEEEcCCCcccccccCccc-eeccCCcccEEEEcCCCCEEEEEeccC---CCCeEEEEECCCCCCCcceeeecc-----
Q 000054 2295 VCTWQLEVGGRSNVRPMESC-LCFSSHAMDVSYITSSGSVIAAAGHSS---NGINVVVWDTLAPPTSSRASITCH----- 2365 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~-~t~~gH~~~V~afSpdGslLATgG~SS---~DGtVrIWDl~t~~~k~v~sl~gH----- 2365 (2548)
|.+||+.+++.......... .....+...+ .+++++..++.+. + .++.|.+||+.. ++....+.+|
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v-~vd~~~g~~yvtd--~~~~~~~~i~v~d~~~--g~~~r~~~~~~~~~~ 169 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDL-AVDLIHNFVYISD--PAPDDKAALIRVDLQT--GLAARVLQGYPGIAP 169 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEE-EEETTTTEEEEEE--CCSGGGCEEEEEETTT--CCEEEECTTCTTTSC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceE-EEecCCCEEEEEc--CccCCCCeEEEEECCC--CCEEEEecCCCcccc
Confidence 99999988763322111000 0001112233 3666554554443 2 467899999864 3333322221
Q ss_pred ------------------------CCCeEEEEEccCCCCCCCCCCEEEEEeCCC-cEEEEeCCccccCceeeeecCCCCC
Q 000054 2366 ------------------------EGGARSISVFDNDLGSGSVSPLIVTGGKGG-DVGIHDFRYIATGKTKKHKHSDRGG 2420 (2548)
Q Consensus 2366 ------------------------s~~VtSLafsP~dlg~gs~g~lLVSGS~DG-tVrLWDLR~l~TGk~l~tl~~~~~~ 2420 (2548)
...+..++++|+ +..|..+..++ .|..+|...+..+.. ..
T Consensus 170 ~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~d-------g~~ly~~~~~~~~l~~~~~~~~~~~~~-~~------- 234 (343)
T 2qe8_A 170 EDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAE-------NEWLYLSPMHSTSMYRIKSADLSNLQL-TD------- 234 (343)
T ss_dssp CSCCCEETTEECBEECTTSCEECCCCCEEEEEECTT-------SCEEEEEESSCSEEEEEEHHHHTCTTC-CH-------
T ss_pred cccceeECCEEEEeccCCCceeceecccceeEeccC-------CCEEEEEeCCCCeEEEEEHHHhcCCCC-Ch-------
Confidence 124677888887 66666666555 444443211000000 00
Q ss_pred CCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccc
Q 000054 2421 SSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHT 2500 (2548)
Q Consensus 2421 s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hs 2500 (2548)
++.. ..+.. .++.+....++++++|.++++...++.|.+||..+|+......
T Consensus 235 -------------~~~~----~~~~~----~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~------- 286 (343)
T 2qe8_A 235 -------------AELG----SKIER----YSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT------- 286 (343)
T ss_dssp -------------HHHH----TTCEE----EEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-------
T ss_pred -------------hhhh----cceEe----cccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-------
Confidence 0000 00000 1233455678999999999999999999999986676432220
Q ss_pred cccCcccCCCCceeecEEEEEEcCCe--EEEEEC
Q 000054 2501 FLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGG 2532 (2548)
Q Consensus 2501 fl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~ 2532 (2548)
.. . ...+.+++++++| +++.+.
T Consensus 287 -------~~--~-~~~p~~va~~~~g~l~v~~~~ 310 (343)
T 2qe8_A 287 -------DE--K-LSWTDSFNFGSDGYLYFDCNQ 310 (343)
T ss_dssp -------CG--G-GSCEEEEEECTTSCEEEEECC
T ss_pred -------CC--c-eecCCeeEECCCCcEEEEeCc
Confidence 00 0 0235778999988 445543
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.19 E-value=6e-07 Score=111.91 Aligned_cols=189 Identities=11% Similarity=0.041 Sum_probs=99.5
Q ss_pred CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccc
Q 000054 2230 LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVR 2309 (2548)
Q Consensus 2230 dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~ 2309 (2548)
++..+++|+.||.|+.||..+|+.+-.+.. +.+.+..+..++..+++++.||.|..||.++|+.....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~ 75 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL 75 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC------------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEEC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC------------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeee
Confidence 567899999999999999999998887753 12333334456777888899999999999888643221
Q ss_pred cCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEE
Q 000054 2310 PMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIV 2389 (2548)
Q Consensus 2310 p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLV 2389 (2548)
+....... ....+ +. ++..+++++ .|+.|+.||..+ ++.+..+..+. ...++|. +..++
T Consensus 76 ~~~~~~~~--~~sp~--~~-~~~~v~~g~---~dg~v~a~D~~t--G~~~w~~~~~~----~~~~~p~-------~~~v~ 134 (369)
T 2hz6_A 76 PFTIPELV--QASPC--RS-SDGILYMGK---KQDIWYVIDLLT--GEKQQTLSSAF----ADSLSPS-------TSLLY 134 (369)
T ss_dssp SCCHHHHH--TTCSC--C------CCCCE---EEEEEEEECCC-----------------------------------EE
T ss_pred eccCcccc--ccCce--Ee-cCCEEEEEe---CCCEEEEEECCC--CcEEEEecCCC----ccccccc-------CCEEE
Confidence 11100000 00111 11 334555553 689999999986 55555554433 1233444 56888
Q ss_pred EEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCC---C
Q 000054 2390 TGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPN---T 2466 (2548)
Q Consensus 2390 SGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPd---G 2466 (2548)
+++.||.|+.|| ..+|+.+..+... . ....+++++ .
T Consensus 135 ~~~~dg~v~a~d---~~tG~~~W~~~~~----------------------------------~----~~~~~~~~~~~~~ 173 (369)
T 2hz6_A 135 LGRTEYTITMYD---TKTRELRWNATYF----------------------------------D----YAASLPEDDVDYK 173 (369)
T ss_dssp EEEEEEEEECCC---SSSSSCCCEEEEE----------------------------------E----ECCBCCCCCTTCC
T ss_pred EEecCCEEEEEE---CCCCCEEEeEecc----------------------------------c----ccCccccCCcccc
Confidence 999999999999 5566654443100 0 001112221 1
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2467 SLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2467 ~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
..+++++.||.|+.||.++|+.+.++
T Consensus 174 ~~v~~~~~dg~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 174 MSHFVSNGDGLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp CCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred ceEEEECCCCEEEEEECCCCcEEEEe
Confidence 44566788999999999999887765
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00019 Score=86.26 Aligned_cols=232 Identities=9% Similarity=0.039 Sum_probs=137.0
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
.....|+|+|+ +++++..++.|..|+. +++ ...+.. +...+..++++++|+.+++...++.|.+|+.
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~----------~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLD----------ATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEE----------SCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeC----------CCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 46788999998 6667788899999997 444 333332 1256899999999997666666688999998
Q ss_pred CCCcccccccCccceeccCCcccEEEEcCCCCEEEE----Eecc----------CCCCeEEEEECCCCCCCcceeeeccC
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAA----AGHS----------SNGINVVVWDTLAPPTSSRASITCHE 2366 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLAT----gG~S----------S~DGtVrIWDl~t~~~k~v~sl~gHs 2366 (2548)
+ ++............+ ..... ..++++|+++++ +... ...+.|..+|..+ ++.. .+. ..
T Consensus 115 ~-g~~~~~~~~~~~~~~-~~~~~-i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~--g~~~-~~~-~~ 187 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRL-NSPND-LIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDG--SPLQ-RMA-DL 187 (305)
T ss_dssp T-SCEEEEECEETTEEC-SCCCC-EEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSS--CCCE-EEE-EE
T ss_pred C-CCEEEEEeccCCCcc-CCCCC-EEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCC--CcEE-EEe-cC
Confidence 6 432111100000000 01112 247889998886 2100 0125677777654 2322 222 44
Q ss_pred CCeEEEEEccCCCCCCCCCCEEEEEeCC------CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCC
Q 000054 2367 GGARSISVFDNDLGSGSVSPLIVTGGKG------GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPG 2440 (2548)
Q Consensus 2367 ~~VtSLafsP~dlg~gs~g~lLVSGS~D------GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~ 2440 (2548)
...+.++|+|+ +..|..+..+ +.|.+||+. .+. +...
T Consensus 188 ~~p~gl~~spd-------g~~lyv~~~~~~~~~~~~i~~~~~~---~~~-l~~~-------------------------- 230 (305)
T 3dr2_A 188 DHPNGLAFSPD-------EQTLYVSQTPEQGHGSVEITAFAWR---DGA-LHDR-------------------------- 230 (305)
T ss_dssp SSEEEEEECTT-------SSEEEEEECCC---CCCEEEEEEEE---TTE-EEEE--------------------------
T ss_pred CCCcceEEcCC-------CCEEEEEecCCcCCCCCEEEEEEec---CCC-ccCC--------------------------
Confidence 56788999998 6666666554 789999943 222 1111
Q ss_pred CCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEE
Q 000054 2441 DQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDI 2520 (2548)
Q Consensus 2441 D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsL 2520 (2548)
+++. ....+....++++++|++.++. .+| |.+||. +++.+..+. .+. .+.++
T Consensus 231 ----~~~~--~~~~~~pdgi~~d~~G~lwv~~-~~g-v~~~~~-~g~~~~~~~--------------~~~-----~~~~~ 282 (305)
T 3dr2_A 231 ----RHFA--SVPDGLPDGFCVDRGGWLWSSS-GTG-VCVFDS-DGQLLGHIP--------------TPG-----TASNC 282 (305)
T ss_dssp ----EEEE--CCSSSCCCSEEECTTSCEEECC-SSE-EEEECT-TSCEEEEEE--------------CSS-----CCCEE
T ss_pred ----eEEE--ECCCCCCCeEEECCCCCEEEec-CCc-EEEECC-CCCEEEEEE--------------CCC-----ceeEE
Confidence 0000 1112334568899999965544 454 999998 577776662 111 14566
Q ss_pred EEcCCe--EEEEECCCcEE
Q 000054 2521 QVVSRG--FLSCGGDGSVK 2537 (2548)
Q Consensus 2521 afSPdG--LaSGS~DGtIr 2537 (2548)
+|+|++ |..++.++..+
T Consensus 283 ~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 283 TFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp EECTTSCEEEEEETTEEEE
T ss_pred EEeCCCCEEEEEcCCeEEE
Confidence 898887 66666654333
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0002 Score=85.80 Aligned_cols=191 Identities=13% Similarity=0.008 Sum_probs=121.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC---------
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD--------- 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D--------- 2292 (2548)
+.+++++|+|+++++ . ++.|.+||..+++.......... .....+.+++++|+|+++++...+
T Consensus 56 ~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~ 127 (297)
T 3g4e_A 56 VSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDND------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLER 127 (297)
T ss_dssp EEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTT------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCT
T ss_pred eEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCC------CCCCCCCCEEECCCCCEEEecCCcccccccccC
Confidence 578889999996554 3 56899999988765433221111 112458999999999977655332
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCc-----ceeeeccCC
Q 000054 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS-----RASITCHEG 2367 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~-----v~sl~gHs~ 2367 (2548)
+.-.+|.+......... .... ....-.+++|+++.++.+. +.++.|.+||+....+.. ...+..+.+
T Consensus 128 ~~~~l~~~d~~g~~~~~-----~~~~-~~pngi~~spdg~~lyv~~--~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~ 199 (297)
T 3g4e_A 128 HQGALYSLFPDHHVKKY-----FDQV-DISNGLDWSLDHKIFYYID--SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQ 199 (297)
T ss_dssp TCEEEEEECTTSCEEEE-----EEEE-SBEEEEEECTTSCEEEEEE--GGGTEEEEEEECTTTCCEEEEEEEEECCGGGC
T ss_pred CCcEEEEEECCCCEEEE-----eecc-ccccceEEcCCCCEEEEec--CCCCcEEEEeccCCCCcccCcEEEEECCCCCC
Confidence 34566766543211110 0000 1111235899999777665 367899999974222322 222333456
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEE
Q 000054 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLW 2447 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iw 2447 (2548)
....+++.++ +.+.++...++.|..|| ..+++.+..+
T Consensus 200 ~p~g~~~d~~-------G~lwva~~~~~~v~~~d---~~tG~~~~~i--------------------------------- 236 (297)
T 3g4e_A 200 IPDGMCIDAE-------GKLWVACYNGGRVIRLD---PVTGKRLQTV--------------------------------- 236 (297)
T ss_dssp EEEEEEEBTT-------SCEEEEEETTTEEEEEC---TTTCCEEEEE---------------------------------
T ss_pred CCCeeEECCC-------CCEEEEEcCCCEEEEEc---CCCceEEEEE---------------------------------
Confidence 7888999887 67888887888999999 5667776665
Q ss_pred EcccCCCCCEEEEEEe-CCCCEEEEEeC
Q 000054 2448 YIPKAHLGSVTRISTV-PNTSLFLTGSK 2474 (2548)
Q Consensus 2448 di~~gH~~~VtsLafS-PdG~~LaSGS~ 2474 (2548)
..+...+++++|. |+++.|+.++.
T Consensus 237 ---~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 237 ---KLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp ---ECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred ---ECCCCCceEEEEeCCCCCEEEEEcC
Confidence 3355678999998 88876665554
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00032 Score=88.36 Aligned_cols=203 Identities=12% Similarity=0.060 Sum_probs=129.9
Q ss_pred EEEEEcCCCCEEEEEEC--CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2223 RAFSSHPLRPFFLVGSS--NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~--DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
..+.++|||+++.++.. ++.|.++|..+++.+.++.. ... ...+....+.+++.+.||.+.+.++
T Consensus 140 ~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v------------~g~-~~~~P~g~~~~~~~~~DG~~~~v~~ 206 (386)
T 3sjl_D 140 WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV------------PDC-YHIFPTAPDTFFMHCRDGSLAKVAF 206 (386)
T ss_dssp GGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC------------CSE-EEEEEEETTEEEEEETTSCEEEEEC
T ss_pred ceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC------------CCc-ceeecCCCceeEEECCCCCEEEEEC
Confidence 34678899999888764 68999999999999888743 111 1223334567888889999999998
Q ss_pred CC-CcccccccCccceeccCCcccEE---EE-cCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee----------cc
Q 000054 2301 EV-GGRSNVRPMESCLCFSSHAMDVS---YI-TSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT----------CH 2365 (2548)
Q Consensus 2301 ~t-gk~i~i~p~~s~~t~~gH~~~V~---af-SpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~----------gH 2365 (2548)
.+ ++..... . ..+..-...+. .| .++|++++.. .+|.|.+.|......+....+. -.
T Consensus 207 ~~~g~v~~~~---~-~~~~~~~~~~~~~~~~~~~dG~~~~vs----~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~ 278 (386)
T 3sjl_D 207 GTEGTPEITH---T-EVFHPEDEFLINHPAYSQKAGRLVWPT----YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR 278 (386)
T ss_dssp CSSSCCEEEE---C-CCCSCTTSCBCSCCEEETTTTEEEEEB----TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE
T ss_pred CCCCeEEEee---c-ceeccccccccccceeEcCCCcEEEEe----CCCEEEEEECCCCcceeecceecccccccccccc
Confidence 76 4321100 0 01111111111 23 4678766553 6899999999753222222221 01
Q ss_pred CCCeEEEEEccCCCCCCCCCCEEEEEeC----------CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCC
Q 000054 2366 EGGARSISVFDNDLGSGSVSPLIVTGGK----------GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGS 2435 (2548)
Q Consensus 2366 s~~VtSLafsP~dlg~gs~g~lLVSGS~----------DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk 2435 (2548)
.++...+.++++ +..+..... .+.|.+.| ..+++.+..+.
T Consensus 279 p~g~q~~a~~~~-------~~~lyV~~~~~~~~~hk~~~~~V~viD---~~t~kv~~~i~-------------------- 328 (386)
T 3sjl_D 279 PGGWQQVAYHRA-------LDRIYLLVDQRDEWRHKTASRFVVVLD---AKTGERLAKFE-------------------- 328 (386)
T ss_dssp ECSSSCEEEETT-------TTEEEEEEEECCTTCTTSCEEEEEEEE---TTTCCEEEEEE--------------------
T ss_pred CCCcceeeECCC-------CCeEEEEeccccccccCCCCCEEEEEE---CCCCeEEEEEE--------------------
Confidence 234445677777 344444321 25788999 66777777651
Q ss_pred CccCCCCCceEEEcccCCCCCEEEEEEeCCCC-EEEEE-eCCCcEEEEECCCCcEEEEec
Q 000054 2436 GSKPGDQNGMLWYIPKAHLGSVTRISTVPNTS-LFLTG-SKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2436 ~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~-~LaSG-S~DGtIrIWDl~Tgell~tL~ 2493 (2548)
.+ ..+.+|+++|+++ +|+++ ..+++|.|+|..+++.+.+++
T Consensus 329 ---------------vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~ 371 (386)
T 3sjl_D 329 ---------------MG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN 371 (386)
T ss_dssp ---------------EE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred ---------------CC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEec
Confidence 11 2577999999996 66665 458999999999999999884
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0017 Score=79.97 Aligned_cols=269 Identities=10% Similarity=0.058 Sum_probs=148.5
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccccccc
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRP 2310 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p 2310 (2548)
+..+.+++.++.|..+|..+|+.+-.+............ ...+.+. ...++..++.++.||.|..+|.++|+..-...
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKE-PALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCC-CCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCcccccccccc-CcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 567788888999999999999987666432110000000 1222221 12246678889999999999999886432211
Q ss_pred CccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe-----EEEEEccCCCCCCCCC
Q 000054 2311 MESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA-----RSISVFDNDLGSGSVS 2385 (2548)
Q Consensus 2311 ~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V-----tSLafsP~dlg~gs~g 2385 (2548)
... ......+ +. + ..+++++ .++.|..+|..+ ++.+.......... ...... +
T Consensus 131 ~~~----~~~~~p~--~~-~-~~v~v~~---~~g~l~~~d~~t--G~~~W~~~~~~~~~~~~~~~~~~~~---------~ 188 (376)
T 3q7m_A 131 VAG----EALSRPV--VS-D-GLVLIHT---SNGQLQALNEAD--GAVKWTVNLDMPSLSLRGESAPTTA---------F 188 (376)
T ss_dssp CSS----CCCSCCE--EE-T-TEEEEEC---TTSEEEEEETTT--CCEEEEEECCC-----CCCCCCEEE---------T
T ss_pred CCC----ceEcCCE--EE-C-CEEEEEc---CCCeEEEEECCC--CcEEEEEeCCCCceeecCCCCcEEE---------C
Confidence 100 0011111 11 3 3555553 789999999876 45444443221110 111111 2
Q ss_pred CEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCc-------cccccccCCCCCC-ccCCCCCceEEEcccCC----
Q 000054 2386 PLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSI-------NTCAHADAQTGSG-SKPGDQNGMLWYIPKAH---- 2453 (2548)
Q Consensus 2386 ~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~-------~~~~vafSpdGk~-v~s~D~sv~Iwdi~~gH---- 2453 (2548)
..++.++.+|.|..+| ..+|+.+............ ....... .++.. ++..++.+..++...+.
T Consensus 189 ~~v~~g~~~g~l~~~d---~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~v~~~~~~g~l~~~d~~tG~~~w~ 264 (376)
T 3q7m_A 189 GAAVVGGDNGRVSAVL---MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV-VNGVVFALAYNGNLTALDLRSGQIMWK 264 (376)
T ss_dssp TEEEECCTTTEEEEEE---TTTCCEEEEEECCC-----------CCCCCCEE-ETTEEEEECTTSCEEEEETTTCCEEEE
T ss_pred CEEEEEcCCCEEEEEE---CCCCcEEEEEecccCCCCcccccccccCCCcEE-ECCEEEEEecCcEEEEEECCCCcEEee
Confidence 3788888899999999 6678776554221110000 0000111 12222 44445555555543321
Q ss_pred --CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEE
Q 000054 2454 --LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCG 2531 (2548)
Q Consensus 2454 --~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS 2531 (2548)
......+.. ++..++.++.+|.|..+|..+|+.+...+.. ....+... ....+.++.++
T Consensus 265 ~~~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~-------------~~~~~~~~----~~~~~~l~v~~ 325 (376)
T 3q7m_A 265 RELGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL-------------LHRLLTSP----VLYNGNLVVGD 325 (376)
T ss_dssp ECCCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTT-------------TTSCCCCC----EEETTEEEEEC
T ss_pred ccCCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeeccc-------------CCCcccCC----EEECCEEEEEe
Confidence 123334443 4667888889999999999999988765210 01111111 23333388888
Q ss_pred CCCcEEEEECCCCcc
Q 000054 2532 GDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2532 ~DGtIrIWDL~sg~l 2546 (2548)
.+|.|.++|..++..
T Consensus 326 ~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 326 SEGYLHWINVEDGRF 340 (376)
T ss_dssp TTSEEEEEETTTCCE
T ss_pred CCCeEEEEECCCCcE
Confidence 999999999988753
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00027 Score=89.42 Aligned_cols=210 Identities=11% Similarity=0.056 Sum_probs=128.5
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCC--eEEE
Q 000054 2271 LASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGI--NVVV 2348 (2548)
Q Consensus 2271 ~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DG--tVrI 2348 (2548)
......|+|+++++.+++...++.|++||..++....+.. . ..... .+++++++.++++. .++ .|.+
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~------~-~~~~~-ia~~~~g~~l~~~d---~~~~~~I~~ 198 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHP------G-FKGGK-PAVTKDKQRVYSIG---WEGTHTVYV 198 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEE------T-CCBCB-CEECTTSSEEEEEB---SSTTCEEEE
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeec------c-CCCCc-eeEecCCCcEEEEe---cCCCceEEE
Confidence 3578999999999977877778999999998765332211 1 11122 56899999888875 333 7888
Q ss_pred EECCCCCCCcceee---ec-cCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcc
Q 000054 2349 WDTLAPPTSSRASI---TC-HEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSIN 2424 (2548)
Q Consensus 2349 WDl~t~~~k~v~sl---~g-Hs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~ 2424 (2548)
+|.... .....+ .. +...+.+++++|.+ +.+++ +..++.|+.||. .++...... ...
T Consensus 199 ~d~~~~--~~~~~~g~~~~~~~~~p~~iav~p~~------g~lyv-~d~~~~I~~~d~---~~~~~~~~~-~~~------ 259 (409)
T 3hrp_A 199 YMKASG--WAPTRIGQLGSTFSGKIGAVALDETE------EWLYF-VDSNKNFGRFNV---KTQEVTLIK-QLE------ 259 (409)
T ss_dssp EEGGGT--TCEEEEEECCTTSCSCCCBCEECTTS------SEEEE-ECTTCEEEEEET---TTCCEEEEE-ECC------
T ss_pred EEcCCC--ceeEEeeeccchhcCCcEEEEEeCCC------CeEEE-EECCCcEEEEEC---CCCCEEEEe-ccc------
Confidence 887642 222222 12 44677889999953 44444 677889999994 333321110 000
Q ss_pred ccccccCCCCCCccCCCCCceEEEcccCCCCC--EEEEEEeCC-CCEEEEEeCCCcEEEEECCCCcEEEEeccccccccc
Q 000054 2425 TCAHADAQTGSGSKPGDQNGMLWYIPKAHLGS--VTRISTVPN-TSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTF 2501 (2548)
Q Consensus 2425 ~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~--VtsLafSPd-G~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsf 2501 (2548)
..++... ...++|+|+ +.++++-..++.|+.||.... +..+.+...
T Consensus 260 -------------------------~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~---- 308 (409)
T 3hrp_A 260 -------------------------LSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSAT---- 308 (409)
T ss_dssp -------------------------CCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTT----
T ss_pred -------------------------ccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCC----
Confidence 0111111 138999995 666666677889999997643 223311000
Q ss_pred ccCcccCCCCce-----eecEEEEEEcCCe--EEEEE-CCCcEEEEECCCCc
Q 000054 2502 LQPSSRGFGGVV-----RAGVTDIQVVSRG--FLSCG-GDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2502 l~~tl~GH~~~V-----~a~VtsLafSPdG--LaSGS-~DGtIrIWDL~sg~ 2545 (2548)
..|..+-. ......++++|+| +++-+ .+++|+.|++.++.
T Consensus 309 ----~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 309 ----QKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp ----CCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred ----CCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 01111000 0235788999999 55666 78999999977664
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00011 Score=93.78 Aligned_cols=216 Identities=13% Similarity=0.037 Sum_probs=129.3
Q ss_pred EEEEcCCCCEEEEEE----------CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC--
Q 000054 2224 AFSSHPLRPFFLVGS----------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-- 2291 (2548)
Q Consensus 2224 ~VsfSPdG~~LASGS----------~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-- 2291 (2548)
.+.++|||+++.++. .++.|.++|..+++.+..+..-... + .........++|+|||++++++..
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~--r-~~~g~~P~~~~~spDGk~lyV~n~~~ 198 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAP--R-FLVGTYQWMNALTPDNKNLLFYQFSP 198 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCC--C-CCBSCCGGGSEECTTSSEEEEEECSS
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcc--c-cccCCCcceEEEcCCCCEEEEEecCC
Confidence 678899999888765 4778999999999988887542000 0 000123457899999999999874
Q ss_pred CCcEEEEEcCCCcccccccCccc-eeccCCcccEEE-------------------------------------EcCCCCE
Q 000054 2292 DGTVCTWQLEVGGRSNVRPMESC-LCFSSHAMDVSY-------------------------------------ITSSGSV 2333 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~-~t~~gH~~~V~a-------------------------------------fSpdGsl 2333 (2548)
++.|.+.|+.+++.....+.... ............ +.+++..
T Consensus 199 ~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~ 278 (426)
T 3c75_H 199 APAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGR 278 (426)
T ss_dssp SCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCE
T ss_pred CCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCE
Confidence 57999999998764432221100 000000000111 2444444
Q ss_pred EEEEeccCCCCeEEEEECCCCCCCcceeee----------ccCCCeEEEEEccCCCCCCCCCCEEEEE-e---------C
Q 000054 2334 IAAAGHSSNGINVVVWDTLAPPTSSRASIT----------CHEGGARSISVFDNDLGSGSVSPLIVTG-G---------K 2393 (2548)
Q Consensus 2334 LATgG~SS~DGtVrIWDl~t~~~k~v~sl~----------gHs~~VtSLafsP~dlg~gs~g~lLVSG-S---------~ 2393 (2548)
++... ..+.|.+.|........+..+. ....+...+.++|+ +..+.+. . .
T Consensus 279 ~~~~s---~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~d-------g~rlyVa~~~~~~gthk~~ 348 (426)
T 3c75_H 279 LVWPT---YTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQ-------SDRIYLLVDQRDEWKHKAA 348 (426)
T ss_dssp EEEEB---TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGG-------GTEEEEEEEECCTTCTTSC
T ss_pred EEEEe---CCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCC-------CCEEEEEecccccccccCC
Confidence 44332 4456666665421100111110 01112223567777 3444333 2 1
Q ss_pred CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCC-EEEEE
Q 000054 2394 GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTS-LFLTG 2472 (2548)
Q Consensus 2394 DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~-~LaSG 2472 (2548)
++.|.+.| ..+.+.+..+. -+ .....++|+|+|+ ++++.
T Consensus 349 s~~VsVID---~~T~kvv~~I~-----------------------------------vg--~~P~gia~spDg~~~lyv~ 388 (426)
T 3c75_H 349 SRFVVVLN---AETGERINKIE-----------------------------------LG--HEIDSINVSQDAEPLLYAL 388 (426)
T ss_dssp EEEEEEEE---TTTCCEEEEEE-----------------------------------EE--EEECEEEECCSSSCEEEEE
T ss_pred CCEEEEEE---CCCCeEEEEEE-----------------------------------CC--CCcCeEEEccCCCEEEEEE
Confidence 35799999 56677766651 11 1367899999999 88888
Q ss_pred e-CCCcEEEEECCCCcEEEEe
Q 000054 2473 S-KDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2473 S-~DGtIrIWDl~Tgell~tL 2492 (2548)
. .++.|.|+|+.+++.+.++
T Consensus 389 n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 389 SAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp ETTTTEEEEEETTTCCEEEEE
T ss_pred cCCCCeEEEEECCCCCEEEEe
Confidence 8 5999999999999999886
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0011 Score=80.64 Aligned_cols=189 Identities=11% Similarity=0.036 Sum_probs=114.0
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC----CcEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD----GTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D----GtVrV 2297 (2548)
+.++.++|+|+++++. .+ .|.+||..+++..... .... ......+.+++++|+|+.+++...+ +...+
T Consensus 92 v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~-~~~~-----~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l 163 (326)
T 2ghs_A 92 GSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA-ELES-----DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSI 163 (326)
T ss_dssp EEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE-CSST-----TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEE
T ss_pred ceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe-eCCC-----CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEE
Confidence 4778888999877754 44 4999999887753322 1110 0112468999999999977655422 23445
Q ss_pred EEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCC-Cc-----ceeeeccCCCeEE
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPT-SS-----RASITCHEGGARS 2371 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~-k~-----v~sl~gHs~~VtS 2371 (2548)
|.+++++..... .......-.+++++|+.++.+. +.++.|.+||+....+ .. +..+......+..
T Consensus 164 ~~~~~g~~~~~~-------~~~~~~~~i~~s~dg~~lyv~~--~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~g 234 (326)
T 2ghs_A 164 YHVAKGKVTKLF-------ADISIPNSICFSPDGTTGYFVD--TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDG 234 (326)
T ss_dssp EEEETTEEEEEE-------EEESSEEEEEECTTSCEEEEEE--TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEE
T ss_pred EEEeCCcEEEee-------CCCcccCCeEEcCCCCEEEEEE--CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCe
Confidence 544433211100 0001111235899998776665 3678999999851112 21 1222233456778
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK 2451 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~ 2451 (2548)
+.+.++ +.+.++...++.|..|| . +++.+..+ .
T Consensus 235 i~~d~~-------G~lwva~~~~~~v~~~d---~-~g~~~~~i------------------------------------~ 267 (326)
T 2ghs_A 235 SVCDAE-------GHIWNARWGEGAVDRYD---T-DGNHIARY------------------------------------E 267 (326)
T ss_dssp EEECTT-------SCEEEEEETTTEEEEEC---T-TCCEEEEE------------------------------------E
T ss_pred eEECCC-------CCEEEEEeCCCEEEEEC---C-CCCEEEEE------------------------------------E
Confidence 888877 66777776778899999 3 34544443 2
Q ss_pred CCCCCEEEEEEe-CCCCEEEEEeC
Q 000054 2452 AHLGSVTRISTV-PNTSLFLTGSK 2474 (2548)
Q Consensus 2452 gH~~~VtsLafS-PdG~~LaSGS~ 2474 (2548)
.+...+++++|+ |+++.|+.++.
T Consensus 268 ~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 268 VPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp CSCSBEEEEEEESTTSCEEEEEEB
T ss_pred CCCCCcEEEEEecCCCCEEEEEec
Confidence 344578999998 88876655544
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00011 Score=92.09 Aligned_cols=76 Identities=5% Similarity=-0.172 Sum_probs=55.5
Q ss_pred EEEEcCCCCEEEEEE----------CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC--
Q 000054 2224 AFSSHPLRPFFLVGS----------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-- 2291 (2548)
Q Consensus 2224 ~VsfSPdG~~LASGS----------~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-- 2291 (2548)
.+.++|||+++.++. .++.|.+||..+++.+.++....+.. . ........++++|||++++++..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~--~-~~g~~P~~ia~SpDGk~lyVan~~~ 145 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR--F-SVGPRVHIIGNCASSACLLFFLFGS 145 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS--C-CBSCCTTSEEECTTSSCEEEEECSS
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc--c-ccCCCcceEEEcCCCCEEEEEccCC
Confidence 578889999888775 47899999999999999886421000 0 00023457899999999999875
Q ss_pred CCcEEE--EEcCC
Q 000054 2292 DGTVCT--WQLEV 2302 (2548)
Q Consensus 2292 DGtVrV--WDl~t 2302 (2548)
+..|.+ +|..+
T Consensus 146 ~~~v~V~~iD~~t 158 (368)
T 1mda_H 146 SAAAGLSVPGASD 158 (368)
T ss_dssp SCEEEEEETTTEE
T ss_pred CCeEEEEEEchhh
Confidence 467888 88865
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.81 E-value=3e-06 Score=105.56 Aligned_cols=181 Identities=15% Similarity=0.122 Sum_probs=95.8
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcc
Q 000054 2282 YGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR 2359 (2548)
Q Consensus 2282 dG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v 2359 (2548)
++..+++++.||.|..||..+|+..-... . ..+.+ +..++.++++++ .|+.|+.||..+ ++.+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~--------~--~~~~s~p~~~~g~~~v~~s---~dg~l~a~d~~t--G~~~ 72 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLK--------E--DPVLQVPTHVEEPAFLPDP---NDGSLYTLGSKN--NEGL 72 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEE--------C--CCSCCCC-----CCEEECT---TTCCEEEC-------CCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEec--------C--CCceecceEcCCCEEEEeC---CCCEEEEEECCC--Ccee
Confidence 57889999999999999999987543211 1 11111 334666666653 899999999976 4444
Q ss_pred eeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccC
Q 000054 2360 ASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKP 2439 (2548)
Q Consensus 2360 ~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s 2439 (2548)
..+..+..... ..+|. ...+..+++|+.||.|+.|| ..+|+.+..+
T Consensus 73 w~~~~~~~~~~--~~sp~----~~~~~~v~~g~~dg~v~a~D---~~tG~~~w~~------------------------- 118 (369)
T 2hz6_A 73 TKLPFTIPELV--QASPC----RSSDGILYMGKKQDIWYVID---LLTGEKQQTL------------------------- 118 (369)
T ss_dssp EECSCCHHHHH--TTCSC----C-----CCCCEEEEEEEEEC---CC---------------------------------
T ss_pred eeeeccCcccc--ccCce----EecCCEEEEEeCCCEEEEEE---CCCCcEEEEe-------------------------
Confidence 33332211000 00111 00134778888999999999 5667765443
Q ss_pred CCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEE
Q 000054 2440 GDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTD 2519 (2548)
Q Consensus 2440 ~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vts 2519 (2548)
..+. ...++|++..+++++.||.|+.||.++|+.+.+++. .++. .
T Consensus 119 -----------~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~------------~~~~----~---- 163 (369)
T 2hz6_A 119 -----------SSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATY------------FDYA----A---- 163 (369)
T ss_dssp -----------------------------EEEEEEEEEEECCCSSSSSCCCEEEE------------EEEC----C----
T ss_pred -----------cCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEec------------cccc----C----
Confidence 1111 123456888999999999999999999998765520 0011 1
Q ss_pred EEEcC----Ce-EEEEECCCcEEEEECCCCcc
Q 000054 2520 IQVVS----RG-FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2520 LafSP----dG-LaSGS~DGtIrIWDL~sg~l 2546 (2548)
.++++ ++ ++.++.||.|+.||..+|..
T Consensus 164 ~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 164 SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp BCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred ccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 12333 24 77889999999999988753
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0011 Score=89.19 Aligned_cols=270 Identities=12% Similarity=0.057 Sum_probs=146.6
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC------CCcEEEEEcCCCc
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL------DGTVCTWQLEVGG 2304 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~------DGtVrVWDl~tgk 2304 (2548)
+..+++++.|+.|..+|..+|+.+-.+................+ . .+..+++++. +|.|..+|.++|+
T Consensus 128 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~----v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~ 201 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPR----V--FKGKVIIGNGGAEYGVRGYITAYDAETGE 201 (677)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCE----E--ETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcE----E--ECCEEEEEecccccCCCCEEEEEECCCCc
Confidence 56788889999999999999999888764201000000000111 1 2445555543 7999999999987
Q ss_pred ccccccCccce---------------ecc---------CCcc--cEEEEcCCCCEEEEEeccCCCC--------------
Q 000054 2305 RSNVRPMESCL---------------CFS---------SHAM--DVSYITSSGSVIAAAGHSSNGI-------------- 2344 (2548)
Q Consensus 2305 ~i~i~p~~s~~---------------t~~---------gH~~--~V~afSpdGslLATgG~SS~DG-------------- 2344 (2548)
..-........ ... +... ....+++++.+++.+. .++
T Consensus 202 ~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~---~~~~~w~~~~~~~~~gd 278 (677)
T 1kb0_A 202 RKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGT---GNGSPWSHKVRSPKGGD 278 (677)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEEC---CCEESSCHHHHSTTCCC
T ss_pred EEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEEC---CCCccccCCCCCccCCC
Confidence 54211110000 000 0000 1224778888887764 332
Q ss_pred -----eEEEEECCCCCCCcceeeec--cC-------CCeEEEEEccCCCCCCCCC---CEEEEEeCCCcEEEEeCCcccc
Q 000054 2345 -----NVVVWDTLAPPTSSRASITC--HE-------GGARSISVFDNDLGSGSVS---PLIVTGGKGGDVGIHDFRYIAT 2407 (2548)
Q Consensus 2345 -----tVrIWDl~t~~~k~v~sl~g--Hs-------~~VtSLafsP~dlg~gs~g---~lLVSGS~DGtVrLWDLR~l~T 2407 (2548)
.|..+|..+ ++.+-.++. |. .....+....+ + ..++.++.+|.|+++| ..+
T Consensus 279 ~~~~~sv~AlD~~T--G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~d-------G~~~~~l~~~~~~G~l~~lD---~~t 346 (677)
T 1kb0_A 279 NLYLASIVALDPDT--GKYKWHYQETPGDNWDYTSTQPMILADIKIA-------GKPRKVILHAPKNGFFFVLD---RTN 346 (677)
T ss_dssp CTTTTEEEEECTTT--CCEEEEEESSTTCCSCCCCCSCCEEEEEEET-------TEEEEEEEECCTTSEEEEEE---TTT
T ss_pred CeeeEEEEEEECCC--CCEEEEEecCCCcccccccCCCcEEEecccC-------CcEeeEEEEECCCCEEEEEE---CCC
Confidence 488889876 555544442 21 11112222222 3 5889999999999999 678
Q ss_pred CceeeeecCCCCCCCccccccccCCCCCCccC-----CCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeC--------
Q 000054 2408 GKTKKHKHSDRGGSSINTCAHADAQTGSGSKP-----GDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSK-------- 2474 (2548)
Q Consensus 2408 Gk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s-----~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~-------- 2474 (2548)
|+.+......... .... +..+|+.+.. ......++.-..+...+ ..++++|++.++++...
T Consensus 347 G~~l~~~~~~~~~---~~~~--~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w-~~~a~dp~~~~~yv~~~~~~~~~~~ 420 (677)
T 1kb0_A 347 GKFISAKNFVPVN---WASG--YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNW-HPMSFNPQTGLVYLPAQNVPVNLMD 420 (677)
T ss_dssp CCEEEEEESSCCS---SEEE--ECTTSCEEECGGGGCTTSCEECSSCTTCSSCS-SCCEEETTTTEEEEEEEECCCEEEE
T ss_pred CCEeccccccccC---cccc--cCCCCceeeccccCcCCCccEECcCcccccCC-CCceEcCCCCEEEEeChhcceeeec
Confidence 8887665322110 0000 0011111000 00000011001111111 35678888777776543
Q ss_pred -----------------------------------CCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEE
Q 000054 2475 -----------------------------------DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTD 2519 (2548)
Q Consensus 2475 -----------------------------------DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vts 2519 (2548)
.|.|..||+.+|+.+.+++. +..++..
T Consensus 421 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---------------~~~~~~g--- 482 (677)
T 1kb0_A 421 DKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---------------VSPWNGG--- 482 (677)
T ss_dssp CTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---------------SSSCCCC---
T ss_pred ccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC---------------CCCCcCc---
Confidence 27899999999999887731 1111122
Q ss_pred EEEcCCe--EEEEECCCcEEEEECCCCcc
Q 000054 2520 IQVVSRG--FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2520 LafSPdG--LaSGS~DGtIrIWDL~sg~l 2546 (2548)
.+..++ ++.++.||.+++||..++..
T Consensus 483 -~~~~~g~~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 483 -TLTTAGNVVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp -EEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred -ceEeCCCEEEEECCCCcEEEEECCCCce
Confidence 233333 67889999999999998753
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0035 Score=84.72 Aligned_cols=166 Identities=11% Similarity=0.008 Sum_probs=93.1
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe------CCCcEEEEEcCCCc
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA------LDGTVCTWQLEVGG 2304 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS------~DGtVrVWDl~tgk 2304 (2548)
+..+++++.|+.|..+|..+|+.+-.+................+. .++ .++.++ .+|.|..||.++|+
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v-----~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~ 194 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRV-----VNG-KVVIGNGGAEFGVRGYVTAYDAETGK 194 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEE-----ETT-EEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEE-----ECC-EEEEEeCCCccCCCCEEEEEECCCCc
Confidence 457888889999999999999988777542010000000011111 134 444443 37899999999987
Q ss_pred ccccccC---ccce------------ecc--------CCc--ccEEEEcCCCCEEEEEeccCCCC---------------
Q 000054 2305 RSNVRPM---ESCL------------CFS--------SHA--MDVSYITSSGSVIAAAGHSSNGI--------------- 2344 (2548)
Q Consensus 2305 ~i~i~p~---~s~~------------t~~--------gH~--~~V~afSpdGslLATgG~SS~DG--------------- 2344 (2548)
..-.... .... ... ++. -...++++++.+++.+. .++
T Consensus 195 ~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~---~~g~~w~~~~~~~~~gd~ 271 (689)
T 1yiq_A 195 EAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGV---GNGSLWDPKWRSQAKGDN 271 (689)
T ss_dssp EEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEEC---CCEESSCHHHHHTTCSCC
T ss_pred EEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeC---CCCCccccCCCCCCCCCc
Confidence 5422110 0000 000 000 01235778888888764 454
Q ss_pred ----eEEEEECCCCCCCcceeeec--cC-------CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCcee
Q 000054 2345 ----NVVVWDTLAPPTSSRASITC--HE-------GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTK 2411 (2548)
Q Consensus 2345 ----tVrIWDl~t~~~k~v~sl~g--Hs-------~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l 2411 (2548)
.|..+|..+ ++.+-.++. |. ..+.......+. .....++.++.+|.++++| ..+|+.+
T Consensus 272 ~y~~~v~AlD~~T--G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G----~~~~~v~~~~~~G~l~~lD---~~tG~~l 342 (689)
T 1yiq_A 272 LFLSSIVAVNADT--GEYVWHYQTTPGDAWDYTATQHMILAELPIDG----KPRKVLMQAPKNGFFYVID---RATGELL 342 (689)
T ss_dssp TTTTEEEEEETTT--CCEEEEEESSTTCCSCCCCCSCEEEEEEEETT----EEEEEEEECCTTSEEEEEE---TTTCCEE
T ss_pred eeeeeEEEEEccC--CceeEeeecCCcccccccCCCCcEEEeeccCC----cEEEEEEEECCCCeEEEEE---CCCCCEe
Confidence 399999987 566555443 22 111111111120 0012788999999999999 6788887
Q ss_pred eee
Q 000054 2412 KHK 2414 (2548)
Q Consensus 2412 ~tl 2414 (2548)
...
T Consensus 343 ~~~ 345 (689)
T 1yiq_A 343 SAK 345 (689)
T ss_dssp EEE
T ss_pred ccc
Confidence 554
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.005 Score=75.72 Aligned_cols=256 Identities=10% Similarity=0.038 Sum_probs=140.8
Q ss_pred CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccc
Q 000054 2230 LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVR 2309 (2548)
Q Consensus 2230 dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~ 2309 (2548)
++..+.+++.++.|..+|..+|+.+-.+..... .....+ . .+..++.++.+|.|..+|.++|+..-..
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~------~~~~p~----~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~ 169 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE------ALSRPV----V--SDGLVLIHTSNGQLQALNEADGAVKWTV 169 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSC------CCSCCE----E--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCc------eEcCCE----E--ECCEEEEEcCCCeEEEEECCCCcEEEEE
Confidence 356788889999999999999998766643110 011111 1 2457888999999999999988644321
Q ss_pred cCcc-ceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCC-C---eEE---EEEccCCCCC
Q 000054 2310 PMES-CLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG-G---ARS---ISVFDNDLGS 2381 (2548)
Q Consensus 2310 p~~s-~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~-~---VtS---LafsP~dlg~ 2381 (2548)
.... ..........+. .+..++.+. .++.+..+|..+ ++.+........ . +.. +...|.
T Consensus 170 ~~~~~~~~~~~~~~~~~----~~~~v~~g~---~~g~l~~~d~~t--G~~~w~~~~~~~~~~~~~~~~~~~~~~p~---- 236 (376)
T 3q7m_A 170 NLDMPSLSLRGESAPTT----AFGAAVVGG---DNGRVSAVLMEQ--GQMIWQQRISQATGSTEIDRLSDVDTTPV---- 236 (376)
T ss_dssp ECCC-----CCCCCCEE----ETTEEEECC---TTTEEEEEETTT--CCEEEEEECCC-----------CCCCCCE----
T ss_pred eCCCCceeecCCCCcEE----ECCEEEEEc---CCCEEEEEECCC--CcEEEEEecccCCCCcccccccccCCCcE----
Confidence 1100 000111111221 134555553 688999999876 444433322110 0 000 000110
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEEcccCC-------
Q 000054 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWYIPKAH------- 2453 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwdi~~gH------- 2453 (2548)
..+..+..++.+|.+..+| ..+|+.+....... ....... ++.. ++..++.+..++...+.
T Consensus 237 -~~~~~v~~~~~~g~l~~~d---~~tG~~~w~~~~~~------~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~~~~ 305 (376)
T 3q7m_A 237 -VVNGVVFALAYNGNLTALD---LRSGQIMWKRELGS------VNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWTQSD 305 (376)
T ss_dssp -EETTEEEEECTTSCEEEEE---TTTCCEEEEECCCC------EEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEEECT
T ss_pred -EECCEEEEEecCcEEEEEE---CCCCcEEeeccCCC------CCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEeecc
Confidence 0134788888899999999 56777765542111 1111111 2222 44445555555432221
Q ss_pred --CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEE
Q 000054 2454 --LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCG 2531 (2548)
Q Consensus 2454 --~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS 2531 (2548)
...+..... .+..|+.++.+|.|.++|..+|+.+..++. ....+.+. .....+.|+.++
T Consensus 306 ~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~--------------~~~~~~~~---~~~~~~~l~v~~ 366 (376)
T 3q7m_A 306 LLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKV--------------DSSGFQTE---PVAADGKLLIQA 366 (376)
T ss_dssp TTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC--------------CTTCBCSC---CEEETTEEEEEB
T ss_pred cCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEec--------------CCCcceeC---CEEECCEEEEEe
Confidence 112222222 356788899999999999999999876631 11111111 123333388899
Q ss_pred CCCcEEEEE
Q 000054 2532 GDGSVKLIQ 2540 (2548)
Q Consensus 2532 ~DGtIrIWD 2540 (2548)
.||.|..|+
T Consensus 367 ~~G~l~~~~ 375 (376)
T 3q7m_A 367 KDGTVYSIT 375 (376)
T ss_dssp TTSCEEEEE
T ss_pred CCCEEEEEe
Confidence 999999987
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0014 Score=88.21 Aligned_cols=202 Identities=13% Similarity=0.139 Sum_probs=121.0
Q ss_pred EEEEEcCCCCEEEEEECCC-------------eEEEEEcCCCce--eEEEeccCCCCCCCCC-CCCCeEEEEEccCCCEE
Q 000054 2223 RAFSSHPLRPFFLVGSSNT-------------HIYLWEFGKDKA--TATYGVLPAANVPPPY-ALASISALQFDHYGHRF 2286 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DG-------------sVrLWDl~tg~~--l~t~~~l~ghs~~~~~-H~~~VtsVaFSPdG~~L 2286 (2548)
..++|+ ||+.|+.++.+. .|++|++.++.. ...+.. .. |...+.++.|+|||+++
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~--------~~~~~~~~~~~~~SpDg~~l 248 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA--------IPAQHHRYVGATVTEDDRFL 248 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESC--------SGGGCCSEEEEEECTTSCEE
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEec--------CCCCCeEEEEEEEcCCCCEE
Confidence 456799 999999887774 399999987653 233321 12 23457899999999988
Q ss_pred EEEeC----CCcEEEEEcCCCcccccccCccceeccCCcccEE-EEcCCCCEEEEEecc-CCCCeEEEEECCCCCCCcce
Q 000054 2287 ASAAL----DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS-YITSSGSVIAAAGHS-SNGINVVVWDTLAPPTSSRA 2360 (2548)
Q Consensus 2287 aSGS~----DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~-afSpdGslLATgG~S-S~DGtVrIWDl~t~~~k~v~ 2360 (2548)
+.... +..|.++|+.++... ...+..+..... .++++|..|+..+.. ...+.|..+|+..+......
T Consensus 249 ~~~~~~~~~~~~i~~~d~~~~~~~-------~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~ 321 (693)
T 3iuj_A 249 LISAANSTSGNRLYVKDLSQENAP-------LLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWR 321 (693)
T ss_dssp EEEEESSSSCCEEEEEETTSTTCC-------CEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE
T ss_pred EEEEccCCCCcEEEEEECCCCCCc-------eEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccE
Confidence 65433 248899998765311 112333333332 256666655544311 01367999998764222245
Q ss_pred eeeccCCCeEEEEEccCCCCCCCCCCEEEEEe-CCC--cEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCc
Q 000054 2361 SITCHEGGARSISVFDNDLGSGSVSPLIVTGG-KGG--DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGS 2437 (2548)
Q Consensus 2361 sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS-~DG--tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v 2437 (2548)
.+..|...+. .|++. ++.|+... .+| .|++||+ . +...+.+.
T Consensus 322 ~l~~~~~~~~--~~s~~-------g~~lv~~~~~~g~~~l~~~d~---~-g~~~~~l~---------------------- 366 (693)
T 3iuj_A 322 DLIPERQQVL--TVHSG-------SGYLFAEYMVDATARVEQFDY---E-GKRVREVA---------------------- 366 (693)
T ss_dssp EEECCCSSCE--EEEEE-------TTEEEEEEEETTEEEEEEECT---T-SCEEEEEC----------------------
T ss_pred EEecCCCCEE--EEEEE-------CCEEEEEEEECCeeEEEEEEC---C-CCeeEEee----------------------
Confidence 6667776665 77777 45555554 454 6888884 3 23333320
Q ss_pred cCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCC----CcEEEEECCCCcE
Q 000054 2438 KPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKD----GDVKLWDAKAAQL 2488 (2548)
Q Consensus 2438 ~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~D----GtIrIWDl~Tgel 2488 (2548)
....+.+..+.++|+++.++....+ ++|..||+.+++.
T Consensus 367 -------------~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 367 -------------LPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp -------------CSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred -------------cCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 1233455666677777655544433 7888899887764
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0019 Score=87.08 Aligned_cols=118 Identities=13% Similarity=0.034 Sum_probs=69.8
Q ss_pred CCeEEEEEcCCCceeEEEeccCCCC-CCC------------C---------CCCCCeEEEEEccCCCEEEEEeCCC----
Q 000054 2240 NTHIYLWEFGKDKATATYGVLPAAN-VPP------------P---------YALASISALQFDHYGHRFASAALDG---- 2293 (2548)
Q Consensus 2240 DGsVrLWDl~tg~~l~t~~~l~ghs-~~~------------~---------~H~~~VtsVaFSPdG~~LaSGS~DG---- 2293 (2548)
+|.|+.+|..+|+.+-.+....... ... . .+......+.+++++..++.+..++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~ 268 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS 268 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence 7999999999999988776432110 000 0 1112224678899999999887764
Q ss_pred ---------------cEEEEEcCCCcccccccCccce--eccCCcccEE-EEcCCC---CEEEEEeccCCCCeEEEEECC
Q 000054 2294 ---------------TVCTWQLEVGGRSNVRPMESCL--CFSSHAMDVS-YITSSG---SVIAAAGHSSNGINVVVWDTL 2352 (2548)
Q Consensus 2294 ---------------tVrVWDl~tgk~i~i~p~~s~~--t~~gH~~~V~-afSpdG---slLATgG~SS~DGtVrIWDl~ 2352 (2548)
+|..+|.++|+..-........ .+......+. ....+| ..++.+. .+|.++++|..
T Consensus 269 ~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~---~~G~l~~lD~~ 345 (677)
T 1kb0_A 269 HKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP---KNGFFFVLDRT 345 (677)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC---TTSEEEEEETT
T ss_pred CCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEEC---CCCEEEEEECC
Confidence 5999999988754321110000 0011122232 233467 5666654 89999999998
Q ss_pred CCCCCcceee
Q 000054 2353 APPTSSRASI 2362 (2548)
Q Consensus 2353 t~~~k~v~sl 2362 (2548)
+ ++.+..+
T Consensus 346 t--G~~l~~~ 353 (677)
T 1kb0_A 346 N--GKFISAK 353 (677)
T ss_dssp T--CCEEEEE
T ss_pred C--CCEeccc
Confidence 7 5554433
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0066 Score=77.57 Aligned_cols=222 Identities=15% Similarity=0.075 Sum_probs=125.6
Q ss_pred CCCCEEEE-EECCCeEEEEEcCCC----ceeEEEe--ccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC------CcE
Q 000054 2229 PLRPFFLV-GSSNTHIYLWEFGKD----KATATYG--VLPAANVPPPYALASISALQFDHYGHRFASAALD------GTV 2295 (2548)
Q Consensus 2229 PdG~~LAS-GS~DGsVrLWDl~tg----~~l~t~~--~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D------GtV 2295 (2548)
+++++|+. |..++.|.++|+.+. +..++++ .+.. ......-..+...|+| .++++..+ |.|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~-----~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKK-----VSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHH-----HHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhccc-----ccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 67776664 677889999999755 4555552 0000 0001234567788999 77777665 789
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEecc----------------CCCCeEEEEECCCCCCCcc
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHS----------------SNGINVVVWDTLAPPTSSR 2359 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~S----------------S~DGtVrIWDl~t~~~k~v 2359 (2548)
.+.|.++.+.+...+.. ....+...+ .+++|+++.+++.... ..+.+|.+||+.+ .+.+
T Consensus 167 ~vlD~~T~~v~~~~~~~--~~~~~~~Yd-~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~--~k~~ 241 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEID--RGDQYLAYD-FWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK--RKRI 241 (462)
T ss_dssp EEECTTTCCEEEECCSB--CTTCCCCCC-EEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT--TEEE
T ss_pred EEEECCCCeEEEEEccC--CCCccccce-EEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC--CcEe
Confidence 99999887644322110 000011112 2478999988886200 0268999999986 4556
Q ss_pred eeeecc--CCCeEEEEE--ccCCCCCCCCCCEEEEEe------CCCcEEEEeCCccccCcee--eeecCCCCCCCccccc
Q 000054 2360 ASITCH--EGGARSISV--FDNDLGSGSVSPLIVTGG------KGGDVGIHDFRYIATGKTK--KHKHSDRGGSSINTCA 2427 (2548)
Q Consensus 2360 ~sl~gH--s~~VtSLaf--sP~dlg~gs~g~lLVSGS------~DGtVrLWDLR~l~TGk~l--~tl~~~~~~s~~~~~~ 2427 (2548)
..+..- ......+.| +|+ ++++.+++ .+++|.+|... .++.. +.+.
T Consensus 242 ~tI~vg~~g~~P~~i~f~~~Pd-------g~~aYV~~e~~~~~Lss~V~v~~~d---~g~~~~~~vId------------ 299 (462)
T 2ece_A 242 HSLTLGEENRMALELRPLHDPT-------KLMGFINMVVSLKDLSSSIWLWFYE---DGKWNAEKVIE------------ 299 (462)
T ss_dssp EEEESCTTEEEEEEEEECSSTT-------CCEEEEEEEEETTTCCEEEEEEEEE---TTEEEEEEEEE------------
T ss_pred eEEecCCCCCccceeEeeECCC-------CCEEEEEEeeeccCCCceEEEEEec---CCceeEEEEEe------------
Confidence 665532 134555656 777 56555554 67788887732 23211 1110
Q ss_pred cccCCCCCCccCCCCCceEEEc---ccCCCCCEEEEEEeCCCCEEEEEeC-CCcEEEEECC---CCcEEEEe
Q 000054 2428 HADAQTGSGSKPGDQNGMLWYI---PKAHLGSVTRISTVPNTSLFLTGSK-DGDVKLWDAK---AAQLVYHW 2492 (2548)
Q Consensus 2428 vafSpdGk~v~s~D~sv~Iwdi---~~gH~~~VtsLafSPdG~~LaSGS~-DGtIrIWDl~---Tgell~tL 2492 (2548)
. +...... .+=.+ +.+-......+.++|||++|+++.. .+.|.++|+. +.+++..+
T Consensus 300 --i-~~~~v~~------~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I 362 (462)
T 2ece_A 300 --I-PAEPLEG------NLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKV 362 (462)
T ss_dssp --E-CCEECCS------SCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEE
T ss_pred --C-CCccccc------cccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEE
Confidence 0 0000000 00000 0001235678999999999988876 7899999986 34566555
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0035 Score=84.62 Aligned_cols=116 Identities=9% Similarity=0.032 Sum_probs=67.9
Q ss_pred CCCeEEEEEcCCCceeEEEeccCCCCCCC---------------------CCCCCCeEEEEEccCCCEEEEEeCCCc---
Q 000054 2239 SNTHIYLWEFGKDKATATYGVLPAANVPP---------------------PYALASISALQFDHYGHRFASAALDGT--- 2294 (2548)
Q Consensus 2239 ~DGsVrLWDl~tg~~l~t~~~l~ghs~~~---------------------~~H~~~VtsVaFSPdG~~LaSGS~DGt--- 2294 (2548)
.+|.|+.||..+|+.+-.+...++..... ..+......+.++|++..++.+..++.
T Consensus 181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~ 260 (689)
T 1yiq_A 181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWD 260 (689)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccc
Confidence 37899999999999887775432111000 011112236788998899999988864
Q ss_pred ----------------EEEEEcCCCcccccccCccce--eccCCcccEEE-EcCCCC---EEEEEeccCCCCeEEEEECC
Q 000054 2295 ----------------VCTWQLEVGGRSNVRPMESCL--CFSSHAMDVSY-ITSSGS---VIAAAGHSSNGINVVVWDTL 2352 (2548)
Q Consensus 2295 ----------------VrVWDl~tgk~i~i~p~~s~~--t~~gH~~~V~a-fSpdGs---lLATgG~SS~DGtVrIWDl~ 2352 (2548)
|..+|.++|+..-........ .+......+.. ...+|+ .++.+. .+|.++++|.+
T Consensus 261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~---~~G~l~~lD~~ 337 (689)
T 1yiq_A 261 PKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAP---KNGFFYVIDRA 337 (689)
T ss_dssp HHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC---TTSEEEEEETT
T ss_pred cCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEEC---CCCeEEEEECC
Confidence 999999999754321110000 00011111221 223554 566653 89999999997
Q ss_pred CCCCCcc
Q 000054 2353 APPTSSR 2359 (2548)
Q Consensus 2353 t~~~k~v 2359 (2548)
+ ++.+
T Consensus 338 t--G~~l 342 (689)
T 1yiq_A 338 T--GELL 342 (689)
T ss_dssp T--CCEE
T ss_pred C--CCEe
Confidence 6 4544
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0017 Score=77.90 Aligned_cols=192 Identities=10% Similarity=0.062 Sum_probs=109.8
Q ss_pred CCeEEEEEccCCC-EEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEE
Q 000054 2272 ASISALQFDHYGH-RFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVV 2348 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~-~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrI 2348 (2548)
.......|+++|+ .++++..++.|..|+.. ++... +..+...+ .+++++|+++++.. .++.|..
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~~---------~~~~~~~~~gl~~d~dG~l~v~~~---~~~~v~~ 111 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVDV---------LLDATAFTNGNAVDAQQRLVHCEH---GRRAITR 111 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEEE---------EEESCSCEEEEEECTTSCEEEEET---TTTEEEE
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEEE---------EeCCCCccceeeECCCCCEEEEEC---CCCEEEE
Confidence 4567899999998 56677778999999873 43111 11122222 35889999776642 4678999
Q ss_pred EECCCCCCCcceeeecc-----CCCeEEEEEccCCCCCCCCCCEEEE----EeC-------------CCcEEEEeCCccc
Q 000054 2349 WDTLAPPTSSRASITCH-----EGGARSISVFDNDLGSGSVSPLIVT----GGK-------------GGDVGIHDFRYIA 2406 (2548)
Q Consensus 2349 WDl~t~~~k~v~sl~gH-----s~~VtSLafsP~dlg~gs~g~lLVS----GS~-------------DGtVrLWDLR~l~ 2406 (2548)
||.. ++ +..+..+ ...++.+.+.++ +.+.+| |.. .+.|..+| ..
T Consensus 112 ~~~~---g~-~~~~~~~~~~~~~~~~~~i~~d~d-------G~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d---~~ 177 (305)
T 3dr2_A 112 SDAD---GQ-AHLLVGRYAGKRLNSPNDLIVARD-------GAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP---PD 177 (305)
T ss_dssp ECTT---SC-EEEEECEETTEECSCCCCEEECTT-------SCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC---SS
T ss_pred ECCC---CC-EEEEEeccCCCccCCCCCEEECCC-------CCEEEeCcCCCccccccccccccccCCCeEEEEc---CC
Confidence 9974 22 2222211 123566777776 566665 221 13344444 22
Q ss_pred cCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCC------CcEEE
Q 000054 2407 TGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKD------GDVKL 2480 (2548)
Q Consensus 2407 TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~D------GtIrI 2480 (2548)
+++.. .. . .......++|+|+++.|+.+..+ +.|.+
T Consensus 178 ~g~~~----------------------------------~~---~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~ 219 (305)
T 3dr2_A 178 GSPLQ----------------------------------RM---A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITA 219 (305)
T ss_dssp SCCCE----------------------------------EE---E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEE
T ss_pred CCcEE----------------------------------EE---e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEE
Confidence 22211 11 1 12345789999999988777665 78999
Q ss_pred EECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2481 WDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2481 WDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
||+..+. +... ..+ . ....+ ....++++++| |..++.+| |.+|+.+..
T Consensus 220 ~~~~~~~-l~~~------~~~-~---~~~~~----~pdgi~~d~~G~lwv~~~~g-v~~~~~~g~ 268 (305)
T 3dr2_A 220 FAWRDGA-LHDR------RHF-A---SVPDG----LPDGFCVDRGGWLWSSSGTG-VCVFDSDGQ 268 (305)
T ss_dssp EEEETTE-EEEE------EEE-E---CCSSS----CCCSEEECTTSCEEECCSSE-EEEECTTSC
T ss_pred EEecCCC-ccCC------eEE-E---ECCCC----CCCeEEECCCCCEEEecCCc-EEEECCCCC
Confidence 9987654 2211 000 0 00011 12345788999 66555554 888887544
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0063 Score=74.53 Aligned_cols=210 Identities=9% Similarity=0.040 Sum_probs=126.5
Q ss_pred EEEEEEcCCCCEEEEEEC-----CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEE-EEEe---CC
Q 000054 2222 TRAFSSHPLRPFFLVGSS-----NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAA---LD 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~-----DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~L-aSGS---~D 2292 (2548)
+.+++++++|+++++-.. ++.|.+||..+++.+..+..... ...+...+..+++++++..+ ++.. .+
T Consensus 69 p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~----~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 69 VLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPP----ITLSNSFVNDLAVDLIHNFVYISDPAPDDK 144 (343)
T ss_dssp EEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTT----TSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred eeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChh----hcccccccceEEEecCCCEEEEEcCccCCC
Confidence 588899999987776544 68899999999987777653111 11123457899999865444 5544 67
Q ss_pred CcEEEEEcCCCcccccccC----cc---ceeccCC--------------cccE--EEEcCCCCEEEEEeccCCCCeEEEE
Q 000054 2293 GTVCTWQLEVGGRSNVRPM----ES---CLCFSSH--------------AMDV--SYITSSGSVIAAAGHSSNGINVVVW 2349 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~----~s---~~t~~gH--------------~~~V--~afSpdGslLATgG~SS~DGtVrIW 2349 (2548)
+.|.+||+.+++....... .. .....+. ...+ .+++|+|+.++++. ...+.+..+
T Consensus 145 ~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~--~~~~~l~~~ 222 (343)
T 2qe8_A 145 AALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSP--MHSTSMYRI 222 (343)
T ss_dssp CEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEE--SSCSEEEEE
T ss_pred CeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEe--CCCCeEEEE
Confidence 8999999987653221100 00 0000000 0011 35899999888775 234455555
Q ss_pred ECCC-CCCC-----cce--eeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCC
Q 000054 2350 DTLA-PPTS-----SRA--SITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGS 2421 (2548)
Q Consensus 2350 Dl~t-~~~k-----~v~--sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s 2421 (2548)
+... .... ... ...++.+....+++.++ +.++++...++.|.+||. .+++. ..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~-------G~l~va~~~~~~V~~~d~---~~G~~-~~~------- 284 (343)
T 2qe8_A 223 KSADLSNLQLTDAELGSKIERYSEKPICDGISIDKD-------HNIYVGDLAHSAIGVITS---ADRAY-KLL------- 284 (343)
T ss_dssp EHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTT-------CCEEEEEGGGTEEEEEET---TTTEE-EEE-------
T ss_pred EHHHhcCCCCChhhhhcceEecccCCCCceEEECCC-------CCEEEEccCCCeEEEEEC---CCCCE-EEE-------
Confidence 5321 0000 001 12244556667888887 779999889999999993 23432 221
Q ss_pred CccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEE
Q 000054 2422 SINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWD 2482 (2548)
Q Consensus 2422 ~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWD 2482 (2548)
.. ..+.....+++|++++.++++.+..+.+.+|.
T Consensus 285 -------------------------~~--~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 285 -------------------------VT--DEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp -------------------------EE--CGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred -------------------------EE--CCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 00 11245688999999999888887655554443
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.011 Score=71.03 Aligned_cols=212 Identities=13% Similarity=0.040 Sum_probs=127.5
Q ss_pred CeEEEEEccCCCEEEEEeC--CCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEE
Q 000054 2273 SISALQFDHYGHRFASAAL--DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWD 2350 (2548)
Q Consensus 2273 ~VtsVaFSPdG~~LaSGS~--DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWD 2350 (2548)
....+.|++++..+++.+. ++.|.++|..+++.....+ ...+... ..+..++..+..+. -.++.+.++|
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~------l~~~~fg-eGi~~~g~~lyv~t--~~~~~v~viD 92 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHK------MDDSYFG-EGLTLLNEKLYQVV--WLKNIGFIYD 92 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEE------CCTTCCE-EEEEEETTEEEEEE--TTCSEEEEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEe------cCCCcce-EEEEEeCCEEEEEE--ecCCEEEEEE
Confidence 4689999998765555543 5799999999987543221 1122111 11223455565554 2789999999
Q ss_pred CCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccccc
Q 000054 2351 TLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHAD 2430 (2548)
Q Consensus 2351 l~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vaf 2430 (2548)
..+ .+.+..+..-...-+.+. ++. ..++++ ..++.|.++| ..+.+.+..+.....
T Consensus 93 ~~t--~~v~~~i~~g~~~g~glt--~Dg------~~l~vs-~gs~~l~viD---~~t~~v~~~I~Vg~~----------- 147 (266)
T 2iwa_A 93 RRT--LSNIKNFTHQMKDGWGLA--TDG------KILYGS-DGTSILYEID---PHTFKLIKKHNVKYN----------- 147 (266)
T ss_dssp TTT--TEEEEEEECCSSSCCEEE--ECS------SSEEEE-CSSSEEEEEC---TTTCCEEEEEECEET-----------
T ss_pred CCC--CcEEEEEECCCCCeEEEE--ECC------CEEEEE-CCCCeEEEEE---CCCCcEEEEEEECCC-----------
Confidence 976 566666643212223343 442 335544 4688999999 566666655410000
Q ss_pred CCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCC
Q 000054 2431 AQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFG 2510 (2548)
Q Consensus 2431 SpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~ 2510 (2548)
...-..++.+.|. +|...+....++.|.+-|..+++.+.+++-.-..... ...++.
T Consensus 148 --------------------~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~---~~~~~~ 203 (266)
T 2iwa_A 148 --------------------GHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKL---IDEGFR 203 (266)
T ss_dssp --------------------TEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHH---HHTTCT
T ss_pred --------------------CcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccc---cccccc
Confidence 0011236678887 7766666556889999999999999988421000000 000011
Q ss_pred CceeecEEEEEEcCCe---EEEEECCCcEEEEECCCC
Q 000054 2511 GVVRAGVTDIQVVSRG---FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2511 ~~V~a~VtsLafSPdG---LaSGS~DGtIrIWDL~sg 2544 (2548)
. ......|+++|++ ++|+...++|..-++...
T Consensus 204 ~--~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 204 D--IDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp T--CCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred c--cCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 0 1235678999998 778889999998887543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.01 Score=71.21 Aligned_cols=207 Identities=7% Similarity=-0.041 Sum_probs=127.9
Q ss_pred EEEEEEcCCCCEEEEEEC--CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEE-EEEeCCCcEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSS--NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~--DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~L-aSGS~DGtVrVW 2298 (2548)
...+.|+|++.++++.+. ++.|++.|..+++.+..+.. ..+ .....+++. ++.+ ++.-.++.+.++
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-~~~--------~fgeGi~~~--g~~lyv~t~~~~~v~vi 91 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM-DDS--------YFGEGLTLL--NEKLYQVVWLKNIGFIY 91 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC-CTT--------CCEEEEEEE--TTEEEEEETTCSEEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec-CCC--------cceEEEEEe--CCEEEEEEecCCEEEEE
Confidence 467888998766665543 68999999999998888753 111 122345554 4445 445567899999
Q ss_pred EcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccC-----CCeEEEE
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE-----GGARSIS 2373 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs-----~~VtSLa 2373 (2548)
|..+.+.+...+.. .++. +.+++||+.++++. .++.|.++|..+ .+.+..+..-. ..++.+.
T Consensus 92 D~~t~~v~~~i~~g-----~~~g---~glt~Dg~~l~vs~---gs~~l~viD~~t--~~v~~~I~Vg~~~~p~~~~nele 158 (266)
T 2iwa_A 92 DRRTLSNIKNFTHQ-----MKDG---WGLATDGKILYGSD---GTSILYEIDPHT--FKLIKKHNVKYNGHRVIRLNELE 158 (266)
T ss_dssp ETTTTEEEEEEECC-----SSSC---CEEEECSSSEEEEC---SSSEEEEECTTT--CCEEEEEECEETTEECCCEEEEE
T ss_pred ECCCCcEEEEEECC-----CCCe---EEEEECCCEEEEEC---CCCeEEEEECCC--CcEEEEEEECCCCcccccceeEE
Confidence 99987644322210 1221 23556777666654 578999999976 45555554211 2467788
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCC
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAH 2453 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH 2453 (2548)
|. + +.+.+....++.|.+.| ..+++.+..+......... . ..+ ..-
T Consensus 159 ~~-d-------g~lyvn~~~~~~V~vID---~~tg~V~~~I~~~g~~~~~------~-~~~----------------~~~ 204 (266)
T 2iwa_A 159 YI-N-------GEVWANIWQTDCIARIS---AKDGTLLGWILLPNLRKKL------I-DEG----------------FRD 204 (266)
T ss_dssp EE-T-------TEEEEEETTSSEEEEEE---TTTCCEEEEEECHHHHHHH------H-HTT----------------CTT
T ss_pred EE-C-------CEEEEecCCCCeEEEEE---CCCCcEEEEEECCCccccc------c-ccc----------------ccc
Confidence 77 4 44556665789999999 7788887776210000000 0 000 011
Q ss_pred CCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCC
Q 000054 2454 LGSVTRISTVPNTS-LFLTGSKDGDVKLWDAKAA 2486 (2548)
Q Consensus 2454 ~~~VtsLafSPdG~-~LaSGS~DGtIrIWDl~Tg 2486 (2548)
......++|+|+++ +++|+...++|.+-++...
T Consensus 205 ~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 205 IDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp CCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred cCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 23568999999875 5566667888888887643
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.011 Score=70.50 Aligned_cols=218 Identities=10% Similarity=0.041 Sum_probs=130.0
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccccccc
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRP 2310 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p 2310 (2548)
+..+..|+.++.|..+|.. ++....+.. +...+.++...+++. +..++.++.|..+|.. ++......
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~----------~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~ 173 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKT----------KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFK 173 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEEC----------SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEE
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcC----------CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEe
Confidence 4567778889999999988 766555432 113355566666776 6668888999999988 54322111
Q ss_pred CccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEE
Q 000054 2311 MESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVT 2390 (2548)
Q Consensus 2311 ~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVS 2390 (2548)
.............++.+++. . +.|..+| .. ++...........+.++...++ + .+..
T Consensus 174 ------~~~~~~~~~~~d~~g~l~v~-----t-~~l~~~d-~~--g~~~~~~~~~~~~~~~~~~~~~-------g-~l~v 230 (330)
T 3hxj_A 174 ------TNDAITSAASIGKDGTIYFG-----S-DKVYAIN-PD--GTEKWNFYAGYWTVTRPAISED-------G-TIYV 230 (330)
T ss_dssp ------CSSCCCSCCEECTTCCEEEE-----S-SSEEEEC-TT--SCEEEEECCSSCCCSCCEECTT-------S-CEEE
T ss_pred ------cCCCceeeeEEcCCCEEEEE-----e-CEEEEEC-CC--CcEEEEEccCCcceeceEECCC-------C-eEEE
Confidence 11111111124556765543 3 7888898 33 4444444444456777777665 3 5666
Q ss_pred EeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEE
Q 000054 2391 GGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFL 2470 (2548)
Q Consensus 2391 GS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~La 2470 (2548)
++.++.|..+|. +++.+.... .....+..+.+++++. |.
T Consensus 231 ~t~~~gl~~~~~----~g~~~~~~~------------------------------------~~~~~~~~~~~~~~g~-l~ 269 (330)
T 3hxj_A 231 TSLDGHLYAINP----DGTEKWRFK------------------------------------TGKRIESSPVIGNTDT-IY 269 (330)
T ss_dssp EETTTEEEEECT----TSCEEEEEE------------------------------------CSSCCCSCCEECTTSC-EE
T ss_pred EcCCCeEEEECC----CCCEeEEee------------------------------------CCCCccccceEcCCCe-EE
Confidence 777888888872 334433321 1111122344555554 55
Q ss_pred EEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2471 TGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2471 SGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
.++.+|.|..+|. +++.+..+. -.... +.++..+++| |..++.+|.+++...+..
T Consensus 270 v~t~~ggl~~~d~-~g~~~~~~~--------------~~~~~----~~~~~~d~~g~l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 270 FGSYDGHLYAINP-DGTEKWNFE--------------TGSWI----IATPVIDENGTIYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp EECTTCEEEEECT-TSCEEEEEE--------------CSSCC----CSCCEECTTCCEEEECTTSCEEEEEC---
T ss_pred EecCCCCEEEECC-CCcEEEEEE--------------cCCcc----ccceEEcCCCEEEEEcCCCeEEEEecccc
Confidence 6778889999996 777776552 01111 2334677888 889999999999887654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.048 Score=65.79 Aligned_cols=255 Identities=9% Similarity=0.033 Sum_probs=136.4
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCC----------CCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANV----------PPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~----------~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
.+++++++|.++.++..++.|..||..+++. ..+........ ........+..+++.+++..|+.+...
T Consensus 22 ~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~ 100 (322)
T 2fp8_A 22 NSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCY 100 (322)
T ss_dssp CCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETT
T ss_pred eEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECC
Confidence 4566778998778888899999998776543 33321100000 000011358899999833346666555
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEEEEcC-CCCEEEEEecc--------------CCCCeEEEEECCCCCCC
Q 000054 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITS-SGSVIAAAGHS--------------SNGINVVVWDTLAPPTS 2357 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSp-dGslLATgG~S--------------S~DGtVrIWDl~t~~~k 2357 (2548)
+.|..+|..++....+........+ ..... .++.+ +|++.++-... ..++.|..+|... ++
T Consensus 101 ~~i~~~d~~~g~~~~~~~~~~~~~~-~~p~~-i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~--~~ 176 (322)
T 2fp8_A 101 YHLSVVGSEGGHATQLATSVDGVPF-KWLYA-VTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST--KE 176 (322)
T ss_dssp TEEEEECTTCEECEEEESEETTEEC-SCEEE-EEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT--TE
T ss_pred CCEEEEeCCCCEEEEecccCCCCcc-cccce-EEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC--CE
Confidence 5688888765431111100000000 01112 24788 88877764210 0136788888754 22
Q ss_pred cceeeeccCCCeEEEEEccCCCCCCCCCCE-EEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC
Q 000054 2358 SRASITCHEGGARSISVFDNDLGSGSVSPL-IVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG 2436 (2548)
Q Consensus 2358 ~v~sl~gHs~~VtSLafsP~dlg~gs~g~l-LVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~ 2436 (2548)
+..+.........++++++ +.. .++-..++.|..+|+.....+.
T Consensus 177 -~~~~~~~~~~p~gia~~~d-------g~~lyv~d~~~~~I~~~~~~~~~~~~--------------------------- 221 (322)
T 2fp8_A 177 -TTLLLKELHVPGGAEVSAD-------SSFVLVAEFLSHQIVKYWLEGPKKGT--------------------------- 221 (322)
T ss_dssp -EEEEEEEESCCCEEEECTT-------SSEEEEEEGGGTEEEEEESSSTTTTC---------------------------
T ss_pred -EEEeccCCccCcceEECCC-------CCEEEEEeCCCCeEEEEECCCCcCCc---------------------------
Confidence 2222222234567888888 554 4454667889999953100000
Q ss_pred ccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeC----------CCcEEEEECCCCcEEEEecccccccccccCcc
Q 000054 2437 SKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSK----------DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSS 2506 (2548)
Q Consensus 2437 v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~----------DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl 2506 (2548)
.+.+.. ..+ ...++++++|.+.++... .+.|..+|. .++.+..+...
T Consensus 222 -------~~~~~~---~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~----------- 278 (322)
T 2fp8_A 222 -------AEVLVK---IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLP----------- 278 (322)
T ss_dssp -------EEEEEE---CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECC-----------
T ss_pred -------cceEEe---CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECC-----------
Confidence 111110 112 677899999987777654 467888886 47777766211
Q ss_pred cCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000054 2507 RGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2507 ~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
.|. .. ..++.+++. ++ +++....+.|.+++++.+
T Consensus 279 ~g~--~~-~~~~~~~~~-~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 279 PPF--AG-EHFEQIQEH-DGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp TTT--TT-SCCCEEEEE-TTEEEEECSSCSEEEEEEC---
T ss_pred CCC--cc-ccceEEEEe-CCEEEEeecCCCceEEEecccc
Confidence 010 00 113344553 44 455567888999998754
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.25 Score=57.69 Aligned_cols=227 Identities=12% Similarity=0.041 Sum_probs=127.0
Q ss_pred CEEEEEECCCeEEEEEcCCCcee-----EEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEEcCCCcc
Q 000054 2232 PFFLVGSSNTHIYLWEFGKDKAT-----ATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGTVCTWQLEVGGR 2305 (2548)
Q Consensus 2232 ~~LASGS~DGsVrLWDl~tg~~l-----~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DGtVrVWDl~tgk~ 2305 (2548)
++|..+.. +.|+.++++..... ..+.. + ...+..++|++++..|+.+ ..++.|..++.+.+..
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~-~---------~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~ 70 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHI-P---------AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP 70 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEE-E---------EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecC-C---------CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc
Confidence 45555443 47888888754321 11110 0 1347899999976655555 4568999999875532
Q ss_pred cccccCccceeccC-CcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee-ccCCCeEEEEEccCCCCCCC
Q 000054 2306 SNVRPMESCLCFSS-HAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT-CHEGGARSISVFDNDLGSGS 2383 (2548)
Q Consensus 2306 i~i~p~~s~~t~~g-H~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~-gHs~~VtSLafsP~dlg~gs 2383 (2548)
.... ..+ ....-.++++++..++.+. ..++.|.+++... .....+. ........++++|++
T Consensus 71 ~~~~-------~~~~~~p~~ia~d~~~~~lyv~d--~~~~~I~~~~~~g---~~~~~~~~~~~~~P~~i~vd~~~----- 133 (267)
T 1npe_A 71 TTII-------RQDLGSPEGIALDHLGRTIFWTD--SQLDRIEVAKMDG---TQRRVLFDTGLVNPRGIVTDPVR----- 133 (267)
T ss_dssp EEEE-------CTTCCCEEEEEEETTTTEEEEEE--TTTTEEEEEETTS---CSCEEEECSSCSSEEEEEEETTT-----
T ss_pred EEEE-------ECCCCCccEEEEEecCCeEEEEE--CCCCEEEEEEcCC---CCEEEEEECCCCCccEEEEeeCC-----
Confidence 1111 011 1111124777766666554 3678999999863 2222222 222467889999863
Q ss_pred CCCEEEEEeC--CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEE
Q 000054 2384 VSPLIVTGGK--GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRIS 2461 (2548)
Q Consensus 2384 ~g~lLVSGS~--DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLa 2461 (2548)
+.+.++... .+.|..+++. +.....+ . .........++
T Consensus 134 -g~lyv~~~~~~~~~I~~~~~d----g~~~~~~--------------------------------~---~~~~~~P~gia 173 (267)
T 1npe_A 134 -GNLYWTDWNRDNPKIETSHMD----GTNRRIL--------------------------------A---QDNLGLPNGLT 173 (267)
T ss_dssp -TEEEEEECCSSSCEEEEEETT----SCCCEEE--------------------------------E---CTTCSCEEEEE
T ss_pred -CEEEEEECCCCCcEEEEEecC----CCCcEEE--------------------------------E---ECCCCCCcEEE
Confidence 444455433 4677777742 1211111 0 11123567899
Q ss_pred EeCCCCEEEEE-eCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEE
Q 000054 2462 TVPNTSLFLTG-SKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLI 2539 (2548)
Q Consensus 2462 fSPdG~~LaSG-S~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIW 2539 (2548)
++|++..|+.+ ...+.|.++|...+.....+ .+.. ....++...+. +++....+.|.++
T Consensus 174 ~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~--------------~~~~-----~P~gi~~d~~~lyva~~~~~~v~~~ 234 (267)
T 1npe_A 174 FDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL--------------EGLQ-----YPFAVTSYGKNLYYTDWKTNSVIAM 234 (267)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTEEEEEEEE--------------ECCC-----SEEEEEEETTEEEEEETTTTEEEEE
T ss_pred EcCCCCEEEEEECCCCEEEEEecCCCceEEEe--------------cCCC-----CceEEEEeCCEEEEEECCCCeEEEE
Confidence 99987666555 45679999999754433222 1111 12344565444 4555567899999
Q ss_pred ECCCCc
Q 000054 2540 QLEDYQ 2545 (2548)
Q Consensus 2540 DL~sg~ 2545 (2548)
|..++.
T Consensus 235 d~~~g~ 240 (267)
T 1npe_A 235 DLAISK 240 (267)
T ss_dssp ETTTTE
T ss_pred eCCCCC
Confidence 988764
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.32 Score=66.35 Aligned_cols=283 Identities=13% Similarity=0.150 Sum_probs=160.1
Q ss_pred EEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
.+.++...++|.+.+ |+.+ -|.+||..+++.. .+...... +.......|.++...++|. +-.|+.++-|..++.
T Consensus 264 ~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~-~~~~~~~~--~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~ 337 (795)
T 4a2l_A 264 YIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFA-SYSSNPVE--NGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHP 337 (795)
T ss_dssp BEEEEEECTTSCEEE-EESS-CEEEEETTTTEEE-EECCCTTS--TTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECG
T ss_pred eEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEE-EEecCCCC--CCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCC
Confidence 368888888887555 4444 4888998776533 33211100 1122336799999999888 556777777888887
Q ss_pred CCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee---------ccCCCe
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT---------CHEGGA 2369 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~---------gHs~~V 2369 (2548)
.++........... ..-....|.+ ...+|++.+.. .++-|..||..+. . ...+. -....|
T Consensus 338 ~~~~~~~~~~~~~~--~~l~~~~V~~i~~d~~g~lWiGt----~~~Gl~~~~~~~~--~-~~~~~~~~~~~~~~l~~~~v 408 (795)
T 4a2l_A 338 IRNRFKNIRNIPYK--NSLSDNVVSCIVEDKDKNLWIGT----NDGGLNLYNPITQ--R-FTSYTLQEDESARGIGSNNI 408 (795)
T ss_dssp GGGSSEEECCCTTS--SSCSCSSEEEEEECTTSCEEEEE----SSSCEEEECTTTC--C-EEEECCC------CCSCSCE
T ss_pred CcccceEEcCCCCC--CCCCCCeeEEEEECCCCCEEEEE----CCCCeEEEcCCCC--c-EEEEecCCCCcccCCCCccE
Confidence 65432111110000 0112234555 45667766543 6778999998642 2 22221 123568
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEE
Q 000054 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWY 2448 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwd 2448 (2548)
.++...++ +..|..|+.++-|..+| ..+++..................+...++|.+ +++. +.+..++
T Consensus 409 ~~i~~d~~-------g~~lWigt~~~Gl~~~d---~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~ 477 (795)
T 4a2l_A 409 KAVYVDEK-------KSLVYIGTHAGGLSILH---RNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFN 477 (795)
T ss_dssp EEEEEETT-------TTEEEEEETTTEEEEEE---TTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEE
T ss_pred EEEEEcCC-------CCEEEEEeCcCceeEEe---CCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEe
Confidence 88887766 45477788878899999 44454332211111111122334445556665 5554 4455555
Q ss_pred ccc--------------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCcee
Q 000054 2449 IPK--------------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVR 2514 (2548)
Q Consensus 2449 i~~--------------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~ 2514 (2548)
... -....|.++..+++|.+.+... +-|..||..+++. .+..... ..+...
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~-----------~~~l~~ 542 (795)
T 4a2l_A 478 PEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILP-----------VSNVTK 542 (795)
T ss_dssp TTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSC-----------SCGGGG
T ss_pred CCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCC-----------CCCCCC
Confidence 211 1235799999999998777554 4588899877765 3310000 000111
Q ss_pred ecEEEEEEcCCe-EEEEECCCcEEEEECCCCc
Q 000054 2515 AGVTDIQVVSRG-FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2515 a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg~ 2545 (2548)
..|.++..+++| +-.|+.. -|..||..++.
T Consensus 543 ~~i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~ 573 (795)
T 4a2l_A 543 LFTNCIYEASNGIIWVGTRE-GFYCFNEKDKQ 573 (795)
T ss_dssp SCEEEEEECTTSCEEEEESS-CEEEEETTTTE
T ss_pred CeeEEEEECCCCCEEEEeCC-CceeECCCCCc
Confidence 246778888888 6656655 57778876553
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0052 Score=80.80 Aligned_cols=213 Identities=11% Similarity=-0.005 Sum_probs=128.1
Q ss_pred CCCCEEEEEEC-CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEE-c-cCCCEEEEEe---------------
Q 000054 2229 PLRPFFLVGSS-NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQF-D-HYGHRFASAA--------------- 2290 (2548)
Q Consensus 2229 PdG~~LASGS~-DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaF-S-PdG~~LaSGS--------------- 2290 (2548)
+||+++..... ++.|.+.|+.+.+....+....+ .....+++ + |++.++++++
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g---------~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~ 169 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA---------KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED 169 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC---------CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC---------CCCcceeeeecCCCcEEEEecccccccCCCCccccc
Confidence 57888887654 55799999999998886643111 45788888 5 8999998885
Q ss_pred ---CCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCC------------------------
Q 000054 2291 ---LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG------------------------ 2343 (2548)
Q Consensus 2291 ---~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~D------------------------ 2343 (2548)
.++.+.+.|.++.+.....+ ..+ .-+-..++|+|+++++++..+..
T Consensus 170 ~~~~~~~vtvID~~t~~v~~qI~------Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~ 242 (595)
T 1fwx_A 170 VANYVNVFTAVDADKWEVAWQVL------VSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE 242 (595)
T ss_dssp GGGEEEEEEEEETTTTEEEEEEE------ESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred ccccCceEEEEECCCCeEEEEEE------eCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence 34588999998764322111 122 23334588899888877632211
Q ss_pred -----------CeEEEEECCCCCCCc-ceeeeccCCCeEEEEEccCCCCCCCCCCE-EEEEeCCCcEEEEeCCccccCce
Q 000054 2344 -----------INVVVWDTLAPPTSS-RASITCHEGGARSISVFDNDLGSGSVSPL-IVTGGKGGDVGIHDFRYIATGKT 2410 (2548)
Q Consensus 2344 -----------GtVrIWDl~t~~~k~-v~sl~gHs~~VtSLafsP~dlg~gs~g~l-LVSGS~DGtVrLWDLR~l~TGk~ 2410 (2548)
+.|.+.|.++...+. +..+.. .....++.++|+ |++ ++++..+.+|.++|+.. .+.
T Consensus 243 ~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPD-------Gk~v~V~~~~s~~VsVid~~~---~~~ 311 (595)
T 1fwx_A 243 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPD-------KKHLCVAGKLSPTVTVLDVTR---FDA 311 (595)
T ss_dssp HHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTT-------SSEEEEECTTSSBEEEEEGGG---HHH
T ss_pred EeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCC-------CCEEEEeCCCCCeEEEEECcc---ccc
Confidence 136667765411122 233322 235567888998 564 55555789999999642 110
Q ss_pred eeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-----
Q 000054 2411 KKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA----- 2485 (2548)
Q Consensus 2411 l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~T----- 2485 (2548)
. + +|++ .-....+..+ .-......++|+|+|...++.-.|+.|.+||+.+
T Consensus 312 ~--~------------------~~~l---~~~~~v~~~v--~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~ 366 (595)
T 1fwx_A 312 V--F------------------YENA---DPRSAVVAEP--ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAY 366 (595)
T ss_dssp H--H------------------HSCC---CGGGGEEECC--BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHH
T ss_pred c--c------------------cccc---CcccceEEEc--CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhh
Confidence 0 0 0000 0000000111 1123567899999994444555699999999987
Q ss_pred -----CcEEEEec
Q 000054 2486 -----AQLVYHWS 2493 (2548)
Q Consensus 2486 -----gell~tL~ 2493 (2548)
.+.+.+++
T Consensus 367 ~g~~~~~vi~kid 379 (595)
T 1fwx_A 367 AGEKVDPIKDKLD 379 (595)
T ss_dssp HTCSCCCEEEEEE
T ss_pred cccccceeEEEee
Confidence 56666663
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0085 Score=76.56 Aligned_cols=170 Identities=8% Similarity=0.020 Sum_probs=103.7
Q ss_pred EEEEEEcCCCCEEEEEECC------CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe-----
Q 000054 2222 TRAFSSHPLRPFFLVGSSN------THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA----- 2290 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~D------GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS----- 2290 (2548)
-..+...|+| ++++...+ |.|.+.|..+++.+.++..-.+ -..--..+.|+|+++.+++..
T Consensus 140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~-------~~~~~Yd~~~~p~~~~mvsS~wg~p~ 211 (462)
T 2ece_A 140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRG-------DQYLAYDFWWNLPNEVLVSSEWAVPN 211 (462)
T ss_dssp EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCT-------TCCCCCCEEEETTTTEEEECBCCCHH
T ss_pred ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCC-------CccccceEEECCCCCEEEEccCcCcc
Confidence 4556777999 77765444 7899999999998888753111 012234688899999888884
Q ss_pred --------------CCCcEEEEEcCCCcccccccCccceecc-CCc--ccEEE-EcCCCCEEEEEeccC-----CCCeEE
Q 000054 2291 --------------LDGTVCTWQLEVGGRSNVRPMESCLCFS-SHA--MDVSY-ITSSGSVIAAAGHSS-----NGINVV 2347 (2548)
Q Consensus 2291 --------------~DGtVrVWDl~tgk~i~i~p~~s~~t~~-gH~--~~V~a-fSpdGslLATgG~SS-----~DGtVr 2347 (2548)
.+.+|.+||+.+++.....+ .. .+. ..|.. ++|++++..+++ - .+++|.
T Consensus 212 ~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~------vg~~g~~P~~i~f~~~Pdg~~aYV~~--e~~~~~Lss~V~ 283 (462)
T 2ece_A 212 TIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT------LGEENRMALELRPLHDPTKLMGFINM--VVSLKDLSSSIW 283 (462)
T ss_dssp HHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE------SCTTEEEEEEEEECSSTTCCEEEEEE--EEETTTCCEEEE
T ss_pred ccccccchhhhhhccCCEEEEEECCCCcEeeEEe------cCCCCCccceeEeeECCCCCEEEEEE--eeeccCCCceEE
Confidence 46899999999764332111 11 111 12222 699999888775 2 356777
Q ss_pred EEECCCCCCCcceee--ec----------------cCCCeEEEEEccCCCCCCCCCCEEEEE-eCCCcEEEEeCCccccC
Q 000054 2348 VWDTLAPPTSSRASI--TC----------------HEGGARSISVFDNDLGSGSVSPLIVTG-GKGGDVGIHDFRYIATG 2408 (2548)
Q Consensus 2348 IWDl~t~~~k~v~sl--~g----------------Hs~~VtSLafsP~dlg~gs~g~lLVSG-S~DGtVrLWDLR~l~TG 2408 (2548)
+|....+..+..+.+ .. -......|.++++ +++|.++ -..+.|.++|+....+.
T Consensus 284 v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D-------GrfLYVSnrg~d~VavfdV~d~~~~ 356 (462)
T 2ece_A 284 LWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD-------DKFLYLSLWGIGEVRQYDISNPFKP 356 (462)
T ss_dssp EEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT-------SCEEEEEETTTTEEEEEECSSTTSC
T ss_pred EEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC-------CCEEEEEeCCCCEEEEEEecCCCCc
Confidence 655432111111111 00 0245778899998 5655544 46789999996432233
Q ss_pred ceeeee
Q 000054 2409 KTKKHK 2414 (2548)
Q Consensus 2409 k~l~tl 2414 (2548)
+.+..+
T Consensus 357 ~lv~~I 362 (462)
T 2ece_A 357 VLTGKV 362 (462)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 444443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.038 Score=66.06 Aligned_cols=192 Identities=10% Similarity=0.068 Sum_probs=119.1
Q ss_pred EEEEEEcCCCCEEEEEECCC--eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCCcEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNT--HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DG--sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DGtVrVW 2298 (2548)
...+.|+ ++.++.+++.+| .|+++|+.+++.+..+.. + .........++++.+..+ -.++.+.++
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l-~----------~~~FgeGit~~g~~ly~ltw~~~~v~v~ 112 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL-G----------KRYFGEGISDWKDKIVGLTWKNGLGFVW 112 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC-C----------TTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec-C----------CccceeEEEEeCCEEEEEEeeCCEEEEE
Confidence 5778888 677777777776 899999999999888753 1 223332233345555554 458899999
Q ss_pred EcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc----C-CCeEEEE
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH----E-GGARSIS 2373 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH----s-~~VtSLa 2373 (2548)
|.++.+.+...+ ..+.... ++++++.++.+. .++.|.++|..+ .+.+..+... . ..++.+.
T Consensus 113 D~~t~~~~~ti~------~~~eG~g---lt~dg~~L~~Sd---Gs~~i~~iDp~T--~~v~~~I~V~~~g~~~~~lNELe 178 (262)
T 3nol_A 113 NIRNLRQVRSFN------YDGEGWG---LTHNDQYLIMSD---GTPVLRFLDPES--LTPVRTITVTAHGEELPELNELE 178 (262)
T ss_dssp ETTTCCEEEEEE------CSSCCCC---EEECSSCEEECC---SSSEEEEECTTT--CSEEEEEECEETTEECCCEEEEE
T ss_pred ECccCcEEEEEE------CCCCceE---EecCCCEEEEEC---CCCeEEEEcCCC--CeEEEEEEeccCCccccccceeE
Confidence 999886543322 1222222 335666666543 367899999876 5555555432 1 3455677
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCC
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAH 2453 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH 2453 (2548)
|. + +.+.+..-.++.|.+.| ..+|+.+..+.......... . ...-
T Consensus 179 ~~-~-------G~lyan~w~~~~I~vID---p~tG~V~~~Id~~~L~~~~~--------------~----------~~~~ 223 (262)
T 3nol_A 179 WV-D-------GEIFANVWQTNKIVRID---PETGKVTGIIDLNGILAEAG--------------P----------LPSP 223 (262)
T ss_dssp EE-T-------TEEEEEETTSSEEEEEC---TTTCBEEEEEECTTGGGGSC--------------S----------CCSS
T ss_pred EE-C-------CEEEEEEccCCeEEEEE---CCCCcEEEEEECCcCccccc--------------c----------ccCc
Confidence 65 3 44665555788999999 78899888772211100000 0 0111
Q ss_pred CCCEEEEEEeCCCCEEEEEeC
Q 000054 2454 LGSVTRISTVPNTSLFLTGSK 2474 (2548)
Q Consensus 2454 ~~~VtsLafSPdG~~LaSGS~ 2474 (2548)
....+.||++|+++.|+..+.
T Consensus 224 ~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 224 IDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp CCCEEEEEEETTTTEEEEEET
T ss_pred CCceEEEEEcCCCCEEEEECC
Confidence 235689999998877766664
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.25 Score=57.79 Aligned_cols=205 Identities=9% Similarity=0.020 Sum_probs=119.8
Q ss_pred EEEEEEcCCCCEEE-EEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFL-VGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LA-SGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DGtVrVWD 2299 (2548)
...+++++++..|. +-..++.|..++.+.+.....+.. .......+++++++..++.+ ..++.|.+++
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~----------~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~ 107 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQ----------DLGSPEGIALDHLGRTIFWTDSQLDRIEVAK 107 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECT----------TCCCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEEC----------CCCCccEEEEEecCCeEEEEECCCCEEEEEE
Confidence 57889999765554 555678999999876543322211 12467899999976555554 5567999999
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee-ccCCCeEEEEEccCC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT-CHEGGARSISVFDND 2378 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~-gHs~~VtSLafsP~d 2378 (2548)
.+.......... .+ ..... .++++++..+..+......+.|..+++.. .....+. ..-.....+++++++
T Consensus 108 ~~g~~~~~~~~~----~~-~~P~~-i~vd~~~g~lyv~~~~~~~~~I~~~~~dg---~~~~~~~~~~~~~P~gia~d~~~ 178 (267)
T 1npe_A 108 MDGTQRRVLFDT----GL-VNPRG-IVTDPVRGNLYWTDWNRDNPKIETSHMDG---TNRRILAQDNLGLPNGLTFDAFS 178 (267)
T ss_dssp TTSCSCEEEECS----SC-SSEEE-EEEETTTTEEEEEECCSSSCEEEEEETTS---CCCEEEECTTCSCEEEEEEETTT
T ss_pred cCCCCEEEEEEC----CC-CCccE-EEEeeCCCEEEEEECCCCCcEEEEEecCC---CCcEEEEECCCCCCcEEEEcCCC
Confidence 874321111000 00 11112 24788655554443110146888888753 2222222 223467889999873
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEE
Q 000054 2379 LGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVT 2458 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vt 2458 (2548)
+.+.++-...+.|..+|.. .. ....+ . .+ .....
T Consensus 179 ------~~lyv~d~~~~~I~~~~~~---g~-~~~~~--------------------------------~---~~-~~~P~ 212 (267)
T 1npe_A 179 ------SQLCWVDAGTHRAECLNPA---QP-GRRKV--------------------------------L---EG-LQYPF 212 (267)
T ss_dssp ------TEEEEEETTTTEEEEEETT---EE-EEEEE--------------------------------E---EC-CCSEE
T ss_pred ------CEEEEEECCCCEEEEEecC---CC-ceEEE--------------------------------e---cC-CCCce
Confidence 4466666677899999943 21 11111 0 11 11234
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2459 RISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2459 sLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
.++.+ .+.++++....+.|.++|..+++.+.++
T Consensus 213 gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i 245 (267)
T 1npe_A 213 AVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTF 245 (267)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEE
Confidence 56654 3444444445789999999999998877
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.27 Score=66.99 Aligned_cols=275 Identities=11% Similarity=0.042 Sum_probs=155.2
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
.++...++|.+.+ |+.++-+..|+..+++....... .+...|.++...+++...+ |+.++-+..||..+
T Consensus 176 ~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~---------~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~ 244 (795)
T 4a2l_A 176 ASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPI---------LGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKT 244 (795)
T ss_dssp EEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC-------------CCCEEEEEEEETTEEEE-EEBSSCEEEEETTT
T ss_pred EEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCC---------CCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCC
Confidence 5566667776555 56655588899877654321100 1236799999888877555 44444488898876
Q ss_pred CcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee--------ccCCCeEEE
Q 000054 2303 GGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT--------CHEGGARSI 2372 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~--------gHs~~VtSL 2372 (2548)
++....... ......-....|.+ ..++|.+.+.. .+ .|.+||.... ....+. -....|.++
T Consensus 245 ~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWigt----~~-Gl~~~~~~~~---~~~~~~~~~~~~~~l~~~~i~~i 315 (795)
T 4a2l_A 245 KEIKNYLHS-PSNPKSISSNYIRSLAMDSQNRLWIGT----FN-DLNIYHEGTD---SFASYSSNPVENGSLSQRSVRSI 315 (795)
T ss_dssp TEEEEECCC-TTCTTSCSCSBEEEEEECTTSCEEEEE----SS-CEEEEETTTT---EEEEECCCTTSTTSCSSSCEEEE
T ss_pred CeEEEeecC-CCCccccCCCeEEEEEEcCCCCEEEEe----CC-hhheEcCCCC---eEEEEecCCCCCCCCCCCcEEEE
Confidence 542221100 00000011234554 45677766553 34 6888997642 222221 123568999
Q ss_pred EEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCC---CCCCccccccccCCCCCC-ccCCCCCceEEE
Q 000054 2373 SVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDR---GGSSINTCAHADAQTGSG-SKPGDQNGMLWY 2448 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~---~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwd 2448 (2548)
...+++ .|..|+.++-|..+|. .++.. ..+.... .........+...++|.+ +++.++.+..++
T Consensus 316 ~~D~~g--------~lWigt~~~Gl~~~~~---~~~~~-~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~ 383 (795)
T 4a2l_A 316 FMDSQG--------GMWLGTYFGGLNYYHP---IRNRF-KNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYN 383 (795)
T ss_dssp EECTTS--------CEEEEESSSCEEEECG---GGGSS-EEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEEC
T ss_pred EEeCCc--------CEEEEECCCCeEEeCC---Ccccc-eEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEc
Confidence 887763 5677888888999983 23322 1211111 111122334445556666 666665555554
Q ss_pred ccc----------------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCc
Q 000054 2449 IPK----------------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGV 2512 (2548)
Q Consensus 2449 i~~----------------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~ 2512 (2548)
... .....|.++..+++|..|..|+.++-|.+||..+++... +... . + ....
T Consensus 384 ~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~-~~~~--~-----~--~l~~-- 451 (795)
T 4a2l_A 384 PITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVEN-FNQR--N-----S--QLVN-- 451 (795)
T ss_dssp TTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEE-ECTT--T-----S--CCSC--
T ss_pred CCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEE-eecC--C-----C--CcCC--
Confidence 211 113579999999999856667777779999998877543 3100 0 0 0011
Q ss_pred eeecEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2513 VRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2513 V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
..|.++..+++| |..|+. +.+.+|+..++
T Consensus 452 --~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~ 481 (795)
T 4a2l_A 452 --ENVYAILPDGEGNLWLGTL-SALVRFNPEQR 481 (795)
T ss_dssp --SCEEEEEECSSSCEEEEES-SCEEEEETTTT
T ss_pred --CeeEEEEECCCCCEEEEec-CceeEEeCCCC
Confidence 236777888888 666666 45788887665
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.037 Score=74.51 Aligned_cols=163 Identities=10% Similarity=0.010 Sum_probs=89.9
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC------CCcEEEEEcCCCc
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL------DGTVCTWQLEVGG 2304 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~------DGtVrVWDl~tgk 2304 (2548)
+..+++++.|+.|..+|..+|+.+-.+....... ........+. .+..++++.. +|.|..+|.++|+
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~-~~~~~~~P~v------~~~~v~vg~~~~~~~~~g~v~a~D~~tG~ 189 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAK-PYSITGAPRV------VKGKVIIGNGGAEYGVRGFVSAYDADTGK 189 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTS-SCBCCSCCEE------ETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCC-cceecCCCEE------ECCEEEEeCCCCCcCCCCEEEEEECCCCc
Confidence 4567788899999999999999887775421100 0000011111 1344555543 5899999999987
Q ss_pred ccccccC---ccce------------eccC-------Cccc---EEEEcCCCCEEEEEeccCCCC---------------
Q 000054 2305 RSNVRPM---ESCL------------CFSS-------HAMD---VSYITSSGSVIAAAGHSSNGI--------------- 2344 (2548)
Q Consensus 2305 ~i~i~p~---~s~~------------t~~g-------H~~~---V~afSpdGslLATgG~SS~DG--------------- 2344 (2548)
..-.... .... ...+ .... ..++++++.+++.+. .++
T Consensus 190 ~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~---~~g~~w~~~~~~~~~gd~ 266 (668)
T 1kv9_A 190 LAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGT---GNGSPWNREVRSPGGGDN 266 (668)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEEC---CCEESSCHHHHSTTCCCC
T ss_pred EEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeC---CCCCccccCCCCCCCCCc
Confidence 5422110 0000 0000 0001 124677777777764 444
Q ss_pred ----eEEEEECCCCCCCcceeeec--cC-------CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCcee
Q 000054 2345 ----NVVVWDTLAPPTSSRASITC--HE-------GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTK 2411 (2548)
Q Consensus 2345 ----tVrIWDl~t~~~k~v~sl~g--Hs-------~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l 2411 (2548)
.|..+|..+ ++.+-.++. |. .......+..+. .....++.++.+|.+.++| ..+|+.+
T Consensus 267 l~~~~v~AlD~~t--G~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G----~~~~~v~~~~~~G~l~~lD---~~tG~~l 337 (668)
T 1kv9_A 267 LYLSSILAIRPDT--GKLAWHYQVTPGDSWDFTATQQITLAELNIDG----KPRKVLMQAPKNGFFYVLD---RTNGKLI 337 (668)
T ss_dssp TTTTEEEEECTTT--CCEEEEEESSTTCCSCCCCCSCEEEEEEEETT----EEEEEEEECCTTSEEEEEE---TTTCCEE
T ss_pred eeeeeEEEEcCCC--CceeeEeecCCCccccccCCCCcEEEEeccCC----cEEEEEEEECCCCEEEEEE---CCCCCEe
Confidence 488889876 555544442 22 122222222220 0012688999999999999 6678776
Q ss_pred e
Q 000054 2412 K 2412 (2548)
Q Consensus 2412 ~ 2412 (2548)
.
T Consensus 338 ~ 338 (668)
T 1kv9_A 338 S 338 (668)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.049 Score=74.19 Aligned_cols=155 Identities=10% Similarity=0.090 Sum_probs=89.7
Q ss_pred EEEEEEEc-CCCCEEEEE-ECCC----eEEEEEcCCC-ceeEE-EeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000054 2221 STRAFSSH-PLRPFFLVG-SSNT----HIYLWEFGKD-KATAT-YGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2221 ~V~~VsfS-PdG~~LASG-S~DG----sVrLWDl~tg-~~l~t-~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
.+...+|+ |||+++|-+ +.+| .|+++|+.++ +.+.. +. .....+.|+|||+.|+....|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~-------------~~~~~~~WspDg~~l~y~~~d 241 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS-------------GTNGEIVWGPDHTSLFYVTKD 241 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE-------------EECSCCEECSSTTEEEEEEEC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc-------------CceeeEEEecCCCEEEEEEEC
Confidence 35788999 999988854 3233 5999999988 53211 10 113467899999988877765
Q ss_pred C-----cEEEEEcCCCcccccccCccceeccC--CcccEE-EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCc--ceee
Q 000054 2293 G-----TVCTWQLEVGGRSNVRPMESCLCFSS--HAMDVS-YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--RASI 2362 (2548)
Q Consensus 2293 G-----tVrVWDl~tgk~i~i~p~~s~~t~~g--H~~~V~-afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~--v~sl 2362 (2548)
. .|.++++.++..... ..+.. ....+. .++|||+.|+....+.....|.++|+..+.... ....
T Consensus 242 ~~~~~~~v~~~~lgt~~~~~~------lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~ 315 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSEDV------CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVR 315 (751)
T ss_dssp TTCCEEEEEEEETTSCGGGCE------EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESS
T ss_pred CCCCCCEEEEEECCCCchhcE------EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEee
Confidence 2 577777776532111 11111 111122 489999988765432245578888987642223 2222
Q ss_pred eccCCCeEEEEEccCCCCCCCCCCEEEEEeCC--C--cEEEEe
Q 000054 2363 TCHEGGARSISVFDNDLGSGSVSPLIVTGGKG--G--DVGIHD 2401 (2548)
Q Consensus 2363 ~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~D--G--tVrLWD 2401 (2548)
....+...++.|+.. +.+++....+ + .|..+|
T Consensus 316 ~~~~~~~~s~~~~~g-------~~l~~~t~~~~a~~~~L~~~d 351 (751)
T 2xe4_A 316 PREKGVRYDVQMHGT-------SHLVILTNEGGAVNHKLLIAP 351 (751)
T ss_dssp CCCTTCCEEEEEETT-------TEEEEEECTTTCTTCEEEEEE
T ss_pred cCCCCceEEEeeeeC-------CEEEEEeCCCCCCCcEEEEEc
Confidence 334455666665443 3345554444 3 444555
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.052 Score=64.94 Aligned_cols=195 Identities=10% Similarity=0.042 Sum_probs=116.5
Q ss_pred CCeEEEEEccCCCEEEEEeCCC--cEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEE
Q 000054 2272 ASISALQFDHYGHRFASAALDG--TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVW 2349 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DG--tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIW 2349 (2548)
.-...+.|+ ++.++.+++.+| .|+++|+++++.....+ +....-. ..+.++++.+.... -.++.+.++
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~------l~~~~Fg-eGit~~g~~ly~lt--w~~~~v~v~ 112 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIE------LGKRYFG-EGISDWKDKIVGLT--WKNGLGFVW 112 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEE------CCTTCCE-EEEEEETTEEEEEE--SSSSEEEEE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEe------cCCccce-eEEEEeCCEEEEEE--eeCCEEEEE
Confidence 346788998 677777777776 99999999997543221 1111111 11333455555544 268999999
Q ss_pred ECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccc
Q 000054 2350 DTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHA 2429 (2548)
Q Consensus 2350 Dl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~va 2429 (2548)
|..+ .+.+..+..... -+.++ ++ +..|+.+..++.|.++| ..+.+.+..+...
T Consensus 113 D~~t--~~~~~ti~~~~e-G~glt--~d-------g~~L~~SdGs~~i~~iD---p~T~~v~~~I~V~------------ 165 (262)
T 3nol_A 113 NIRN--LRQVRSFNYDGE-GWGLT--HN-------DQYLIMSDGTPVLRFLD---PESLTPVRTITVT------------ 165 (262)
T ss_dssp ETTT--CCEEEEEECSSC-CCCEE--EC-------SSCEEECCSSSEEEEEC---TTTCSEEEEEECE------------
T ss_pred ECcc--CcEEEEEECCCC-ceEEe--cC-------CCEEEEECCCCeEEEEc---CCCCeEEEEEEec------------
Confidence 9976 666777664222 23444 33 33444444578899999 6666766665100
Q ss_pred cCCCCCCccCCCCCceEEEcccCCC-CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCccc-
Q 000054 2430 DAQTGSGSKPGDQNGMLWYIPKAHL-GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSR- 2507 (2548)
Q Consensus 2430 fSpdGk~v~s~D~sv~Iwdi~~gH~-~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~- 2507 (2548)
+ .+.. ..++.+.|. +|++.+..-.+..|.+.|.++|+.+..+.-.-.... ..
T Consensus 166 ------------------~--~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~-----~~~ 219 (262)
T 3nol_A 166 ------------------A--HGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAE-----AGP 219 (262)
T ss_dssp ------------------E--TTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGG-----SCS
T ss_pred ------------------c--CCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccc-----ccc
Confidence 0 1111 345567776 676666555688999999999999998842110000 00
Q ss_pred CCCCceeecEEEEEEcCCe---EEEEE
Q 000054 2508 GFGGVVRAGVTDIQVVSRG---FLSCG 2531 (2548)
Q Consensus 2508 GH~~~V~a~VtsLafSPdG---LaSGS 2531 (2548)
.+ ........||++|++ ++||-
T Consensus 220 ~~--~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 220 LP--SPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp CC--SSCCCEEEEEEETTTTEEEEEET
T ss_pred cc--CcCCceEEEEEcCCCCEEEEECC
Confidence 01 111345778999987 55653
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0082 Score=71.54 Aligned_cols=246 Identities=11% Similarity=0.020 Sum_probs=142.8
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccccc
Q 000054 2229 PLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNV 2308 (2548)
Q Consensus 2229 PdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i 2308 (2548)
.+|. +..|+.++.|..|| .+++....+.. +...+.++...++|. +..++.+ |..+|. +++....
T Consensus 29 ~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~----------~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~ 92 (330)
T 3hxj_A 29 KNGT-IYLGSSNKNLYAIN-TDGSVKWFFKS----------GEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWR 92 (330)
T ss_dssp TTSC-EECSSTTTTTEEEC-TTSCEEESSCG----------GGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGG
T ss_pred cCCe-EEEEcCCCEEEEEC-CCCcEEEEEec----------CCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEE
Confidence 4444 55667788899999 77776444321 123456777776665 4445544 878885 4432211
Q ss_pred ccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEE
Q 000054 2309 RPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLI 2388 (2548)
Q Consensus 2309 ~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lL 2388 (2548)
.. ..........+. ++ .+..++ .++.|..+|.. ++.......+...+.++...++ + .+
T Consensus 93 ~~------~~~~~~~~~~~~-~~-~l~v~t---~~~~l~~~d~~---g~~~~~~~~~~~~~~~~~~~~~-------g-~l 150 (330)
T 3hxj_A 93 FD------TKKAIVSDFTIF-ED-ILYVTS---MDGHLYAINTD---GTEKWRFKTKKAIYATPIVSED-------G-TI 150 (330)
T ss_dssp SC------C-----CCEEEE-TT-EEEEEC---TTSEEEEECTT---SCEEEEEECSSCCCSCCEECTT-------S-CE
T ss_pred EE------CCCCcccCceEE-CC-EEEEEe---cCCEEEEEcCC---CCEEEEEcCCCceeeeeEEcCC-------C-EE
Confidence 11 000000111122 44 455543 68899999975 2334444444444555555544 3 46
Q ss_pred EEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEEc-------ccCCCCCEEEE
Q 000054 2389 VTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWYI-------PKAHLGSVTRI 2460 (2548)
Q Consensus 2389 VSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwdi-------~~gH~~~VtsL 2460 (2548)
..|+.++.|..+| .. ++.+...... ......+...++|.+ ++. +.+..++. .......+.++
T Consensus 151 ~vgt~~~~l~~~d---~~-g~~~~~~~~~----~~~~~~~~~d~~g~l~v~t--~~l~~~d~~g~~~~~~~~~~~~~~~~ 220 (330)
T 3hxj_A 151 YVGSNDNYLYAIN---PD-GTEKWRFKTN----DAITSAASIGKDGTIYFGS--DKVYAINPDGTEKWNFYAGYWTVTRP 220 (330)
T ss_dssp EEECTTSEEEEEC---TT-SCEEEEEECS----SCCCSCCEECTTCCEEEES--SSEEEECTTSCEEEEECCSSCCCSCC
T ss_pred EEEcCCCEEEEEC---CC-CCEeEEEecC----CCceeeeEEcCCCEEEEEe--CEEEEECCCCcEEEEEccCCcceece
Confidence 6788889999999 44 5555444211 112233344456665 333 55555541 11233567788
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEE
Q 000054 2461 STVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLI 2539 (2548)
Q Consensus 2461 afSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIW 2539 (2548)
..+++|.+ ..++.++.|..+| .+++.+..+ ...... +..+.+.++| |..++.+|.|..+
T Consensus 221 ~~~~~g~l-~v~t~~~gl~~~~-~~g~~~~~~--------------~~~~~~----~~~~~~~~~g~l~v~t~~ggl~~~ 280 (330)
T 3hxj_A 221 AISEDGTI-YVTSLDGHLYAIN-PDGTEKWRF--------------KTGKRI----ESSPVIGNTDTIYFGSYDGHLYAI 280 (330)
T ss_dssp EECTTSCE-EEEETTTEEEEEC-TTSCEEEEE--------------ECSSCC----CSCCEECTTSCEEEECTTCEEEEE
T ss_pred EECCCCeE-EEEcCCCeEEEEC-CCCCEeEEe--------------eCCCCc----cccceEcCCCeEEEecCCCCEEEE
Confidence 88887755 4566789999996 778777544 444332 2345887788 9999999999999
Q ss_pred ECC
Q 000054 2540 QLE 2542 (2548)
Q Consensus 2540 DL~ 2542 (2548)
|.+
T Consensus 281 d~~ 283 (330)
T 3hxj_A 281 NPD 283 (330)
T ss_dssp CTT
T ss_pred CCC
Confidence 963
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.057 Score=71.15 Aligned_cols=252 Identities=10% Similarity=0.026 Sum_probs=150.8
Q ss_pred EEEEECCCeEEEEEcCCCceeEEEeccCCCCC-------------CC----------------CCCCCCeEEEEEcc---
Q 000054 2234 FLVGSSNTHIYLWEFGKDKATATYGVLPAANV-------------PP----------------PYALASISALQFDH--- 2281 (2548)
Q Consensus 2234 LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~-------------~~----------------~~H~~~VtsVaFSP--- 2281 (2548)
+.+|+..|.|+|+-+.+++.+..+-.+..... .. ....+.......|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 44799999999999999998888776543221 00 01112223345554
Q ss_pred --CCCEEEEEeCC-CcEEEEEcCCCcccccccCccceeccCCcccEEEE-c-CCCCEEEEEec---------------cC
Q 000054 2282 --YGHRFASAALD-GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYI-T-SSGSVIAAAGH---------------SS 2341 (2548)
Q Consensus 2282 --dG~~LaSGS~D-GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~af-S-pdGslLATgG~---------------SS 2341 (2548)
||++++.+..+ +.|.+.|+.+.+...+... -.+....-.++ + |++.++++++. ..
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i-----p~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~ 172 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEI-----PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVAN 172 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-----SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGG
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeC-----CCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccc
Confidence 78888777654 5799999998875442211 11121111223 5 88888877741 01
Q ss_pred CCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCC---------------cEEEEeCCccc
Q 000054 2342 NGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGG---------------DVGIHDFRYIA 2406 (2548)
Q Consensus 2342 ~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DG---------------tVrLWDLR~l~ 2406 (2548)
.++.+.+.|..+ .+.+..+.-- +....++++|+ +.++++.+.+. .|.+.|...
T Consensus 173 ~~~~vtvID~~t--~~v~~qI~Vg-g~pd~~~~spd-------Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~-- 240 (595)
T 1fwx_A 173 YVNVFTAVDADK--WEVAWQVLVS-GNLDNCDADYE-------GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAE-- 240 (595)
T ss_dssp EEEEEEEEETTT--TEEEEEEEES-SCCCCEEECSS-------SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHH--
T ss_pred cCceEEEEECCC--CeEEEEEEeC-CCccceEECCC-------CCEEEEEecCcccCcchhhccccccceEEEeeccc--
Confidence 356899999875 4444444321 13455667887 67777777553 456666321
Q ss_pred cCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc--CCC--------CCEEEEEEeCCCCEEEEEe-CC
Q 000054 2407 TGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK--AHL--------GSVTRISTVPNTSLFLTGS-KD 2475 (2548)
Q Consensus 2407 TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~--gH~--------~~VtsLafSPdG~~LaSGS-~D 2475 (2548)
. ....++|+.... +.+.+.|..+ +.. ....++.++|||++++.++ .+
T Consensus 241 -~-------------------~~~v~~Gk~~~i--~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s 298 (595)
T 1fwx_A 241 -I-------------------EKAIAAGDYQEL--NGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLS 298 (595)
T ss_dssp -H-------------------HHHHHHTCSEEE--TTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTS
T ss_pred -e-------------------eEeccCCCeeEE--CcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCC
Confidence 0 011223333111 3355555543 111 1234688999999887776 48
Q ss_pred CcEEEEECCCCc------------EEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEEC
Q 000054 2476 GDVKLWDAKAAQ------------LVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2476 GtIrIWDl~Tge------------ll~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL 2541 (2548)
.+|.++|+.+.+ .+.++ ..| .....++|+|+| .++.-.|+.|.+||+
T Consensus 299 ~~VsVid~~~~~~~~~~~l~~~~~v~~~v-------------~vG------~gP~h~aF~~dG~aY~t~~ldsqV~kwdi 359 (595)
T 1fwx_A 299 PTVTVLDVTRFDAVFYENADPRSAVVAEP-------------ELG------LGPLHTAFDGRGNAYTSLFLDSQVVKWNI 359 (595)
T ss_dssp SBEEEEEGGGHHHHHHSCCCGGGGEEECC-------------BCC------SCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred CeEEEEECcccccccccccCcccceEEEc-------------CCC------CCcceEEECCCCeEEEEEecCCcEEEEEh
Confidence 899999998653 22222 111 224567999999 568889999999998
Q ss_pred CC
Q 000054 2542 ED 2543 (2548)
Q Consensus 2542 ~s 2543 (2548)
++
T Consensus 360 ~~ 361 (595)
T 1fwx_A 360 ED 361 (595)
T ss_dssp HH
T ss_pred hH
Confidence 75
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.048 Score=73.42 Aligned_cols=73 Identities=12% Similarity=0.156 Sum_probs=46.8
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCC-CCe-EEEEEccCCCEEEEEeCCCcEEEEEcCCCccc
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYAL-ASI-SALQFDHYGHRFASAALDGTVCTWQLEVGGRS 2306 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~-~~V-tsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i 2306 (2548)
+..+.+++.++.|.-+|..+|+.+-++....... ...... ..+ ..+.. .+..++.++.||.|..+|.++|+..
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKV-KARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAI 140 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGG-GGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCcc-ccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEe
Confidence 4567777889999999999999887775321100 000000 000 11122 3567888999999999999999754
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.02 Score=76.69 Aligned_cols=117 Identities=12% Similarity=0.046 Sum_probs=69.6
Q ss_pred EEEcC-CCCEEEEEECCC-----------eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC-
Q 000054 2225 FSSHP-LRPFFLVGSSNT-----------HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL- 2291 (2548)
Q Consensus 2225 VsfSP-dG~~LASGS~DG-----------sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~- 2291 (2548)
.++.| ++++++.|+.++ .+.+||..+++...... .+. .+.....++++..+++.++.|+.
T Consensus 191 ~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~-~~~------~~~~~~~~~~~~~~g~lyv~GG~~ 263 (656)
T 1k3i_A 191 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV-TVT------KHDMFCPGISMDGNGQIVVTGGND 263 (656)
T ss_dssp EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE-EEC------SCCCSSCEEEECTTSCEEEECSSS
T ss_pred EEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc-cCC------CCCCccccccCCCCCCEEEeCCCC
Confidence 34447 888888887543 58899988765322111 110 01133446778889999999985
Q ss_pred CCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccC---CCCeEEEEECCC
Q 000054 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSS---NGINVVVWDTLA 2353 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS---~DGtVrIWDl~t 2353 (2548)
++.+.+||..+++-....+. .........+..++|++++.||... .-..+.+||..+
T Consensus 264 ~~~v~~yd~~t~~W~~~~~~-----~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 264 AKKTSLYDSSSDSWIPGPDM-----QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp TTCEEEEEGGGTEEEECCCC-----SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred CCceEEecCcCCceeECCCC-----CccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence 45899999887643222111 0111111223456899999987210 115689999875
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.084 Score=63.27 Aligned_cols=156 Identities=12% Similarity=0.052 Sum_probs=102.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
...+.|+ ++.++.+.+.+|.|+++|+.+++.+..+ ++.. -.--.+++. .++..+..-.++.+.++|.+
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~--------~FgeGit~~-g~~Ly~ltw~~~~v~V~D~~ 124 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLGN--------IFAEGLASD-GERLYQLTWTEGLLFTWSGM 124 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTT--------CCEEEEEEC-SSCEEEEESSSCEEEEEETT
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCC--------cceeEEEEe-CCEEEEEEccCCEEEEEECC
Confidence 4677776 4677778889999999999999988887 3321 111224443 23444445578999999999
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeec--cC---CCeEEEEEcc
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC--HE---GGARSISVFD 2376 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g--Hs---~~VtSLafsP 2376 (2548)
+.+.+...+ ..+... .+.++++.++.+. .++.|.++|..+ .+.+..+.. +. ..++.+.|.
T Consensus 125 Tl~~~~ti~------~~~eGw---GLt~Dg~~L~vSd---Gs~~l~~iDp~T--~~v~~~I~V~~~g~~v~~lNeLe~~- 189 (268)
T 3nok_A 125 PPQRERTTR------YSGEGW---GLCYWNGKLVRSD---GGTMLTFHEPDG--FALVGAVQVKLRGQPVELINELECA- 189 (268)
T ss_dssp TTEEEEEEE------CSSCCC---CEEEETTEEEEEC---SSSEEEEECTTT--CCEEEEEECEETTEECCCEEEEEEE-
T ss_pred cCcEEEEEe------CCCcee---EEecCCCEEEEEC---CCCEEEEEcCCC--CeEEEEEEeCCCCcccccccccEEe-
Confidence 886544322 122222 2346777777764 478999999876 555555543 21 244667766
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeee
Q 000054 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHK 2414 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl 2414 (2548)
+ +.+.+..-.++.|.+.| ..+|+.+..+
T Consensus 190 d-------G~lyanvw~s~~I~vID---p~TG~V~~~I 217 (268)
T 3nok_A 190 N-------GVIYANIWHSSDVLEID---PATGTVVGVI 217 (268)
T ss_dssp T-------TEEEEEETTCSEEEEEC---TTTCBEEEEE
T ss_pred C-------CEEEEEECCCCeEEEEe---CCCCcEEEEE
Confidence 3 44555555788999999 7788888776
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.24 Score=58.69 Aligned_cols=156 Identities=11% Similarity=0.037 Sum_probs=99.4
Q ss_pred EEEEEEcCCCCEEEEEECCC--eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEE-EEEeCCCcEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNT--HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DG--sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~L-aSGS~DGtVrVW 2298 (2548)
...+.|++ +.++.+++.+| .|+.+|+.+++.+..+.. + ...........++.| ...-.++.+.++
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l-~----------~~~fgeGi~~~~~~ly~ltw~~~~v~v~ 90 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEV-P----------PPYFGAGIVAWRDRLIQLTWRNHEGFVY 90 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEEC-C----------TTCCEEEEEEETTEEEEEESSSSEEEEE
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeC-C----------CCcceeEEEEeCCEEEEEEeeCCEEEEE
Confidence 56778876 56666766654 899999999999888753 1 122222222234444 445678999999
Q ss_pred EcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccC-----CCeEEEE
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHE-----GGARSIS 2373 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs-----~~VtSLa 2373 (2548)
|.++.+.+...+ ..+.. ..+.+++..++.+. .++.|.++|..+ .+.+..+.... ..++.+.
T Consensus 91 D~~tl~~~~ti~------~~~~G---wglt~dg~~L~vSd---gs~~l~~iDp~t--~~~~~~I~V~~~g~~~~~lNeLe 156 (243)
T 3mbr_X 91 DLATLTPRARFR------YPGEG---WALTSDDSHLYMSD---GTAVIRKLDPDT--LQQVGSIKVTAGGRPLDNLNELE 156 (243)
T ss_dssp ETTTTEEEEEEE------CSSCC---CEEEECSSCEEEEC---SSSEEEEECTTT--CCEEEEEECEETTEECCCEEEEE
T ss_pred ECCcCcEEEEEe------CCCCc---eEEeeCCCEEEEEC---CCCeEEEEeCCC--CeEEEEEEEccCCcccccceeeE
Confidence 999886544322 12222 22345666555553 467899999876 55555554321 3456666
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeee
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHK 2414 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl 2414 (2548)
+. + +.+.+..-.+..|.+.| ..+|+.+..+
T Consensus 157 ~~-~-------G~lyanvw~s~~I~vID---p~tG~V~~~i 186 (243)
T 3mbr_X 157 WV-N-------GELLANVWLTSRIARID---PASGKVVAWI 186 (243)
T ss_dssp EE-T-------TEEEEEETTTTEEEEEC---TTTCBEEEEE
T ss_pred Ee-C-------CEEEEEECCCCeEEEEE---CCCCCEEEEE
Confidence 65 2 44555555788999999 7788888776
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.16 Score=60.20 Aligned_cols=198 Identities=15% Similarity=0.108 Sum_probs=115.7
Q ss_pred CCeEEEEEccCCCEEEEEeCCC--cEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEE
Q 000054 2272 ASISALQFDHYGHRFASAALDG--TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVW 2349 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DG--tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIW 2349 (2548)
.-...+.|+. +.++.+.+.+| .|+.+|+++++.....+ +..+.-.. .+...++.+.... -.++.+.++
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~------l~~~~fge-Gi~~~~~~ly~lt--w~~~~v~v~ 90 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAE------VPPPYFGA-GIVAWRDRLIQLT--WRNHEGFVY 90 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEE------CCTTCCEE-EEEEETTEEEEEE--SSSSEEEEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEe------CCCCccee-EEEEeCCEEEEEE--eeCCEEEEE
Confidence 5577899986 66666767654 99999999987543221 22221111 1222344444443 278999999
Q ss_pred ECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccc
Q 000054 2350 DTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHA 2429 (2548)
Q Consensus 2350 Dl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~va 2429 (2548)
|..+ .+.+..+..-.. -+.++. +. +.+++| ..++.|.++| ..+.+.+..+...
T Consensus 91 D~~t--l~~~~ti~~~~~-Gwglt~--dg------~~L~vS-dgs~~l~~iD---p~t~~~~~~I~V~------------ 143 (243)
T 3mbr_X 91 DLAT--LTPRARFRYPGE-GWALTS--DD------SHLYMS-DGTAVIRKLD---PDTLQQVGSIKVT------------ 143 (243)
T ss_dssp ETTT--TEEEEEEECSSC-CCEEEE--CS------SCEEEE-CSSSEEEEEC---TTTCCEEEEEECE------------
T ss_pred ECCc--CcEEEEEeCCCC-ceEEee--CC------CEEEEE-CCCCeEEEEe---CCCCeEEEEEEEc------------
Confidence 9976 666777664322 245553 31 335555 4588999999 6666666655100
Q ss_pred cCCCCCCccCCCCCceEEEcccC-CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccC
Q 000054 2430 DAQTGSGSKPGDQNGMLWYIPKA-HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRG 2508 (2548)
Q Consensus 2430 fSpdGk~v~s~D~sv~Iwdi~~g-H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~G 2508 (2548)
+ .+ --..++.+.+. +|+.++..-.+..|.+.|.++|+.+..+.-.-.. +....
T Consensus 144 ------------------~--~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~-----~~~~~ 197 (243)
T 3mbr_X 144 ------------------A--GGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALV-----PDADA 197 (243)
T ss_dssp ------------------E--TTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGS-----TTTTS
T ss_pred ------------------c--CCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCc-----ccccc
Confidence 0 00 11244566665 6766655556789999999999999988421100 00000
Q ss_pred CCCceeecEEEEEEcCCe---EEEEEC
Q 000054 2509 FGGVVRAGVTDIQVVSRG---FLSCGG 2532 (2548)
Q Consensus 2509 H~~~V~a~VtsLafSPdG---LaSGS~ 2532 (2548)
...........||++|++ ++||-.
T Consensus 198 ~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 198 LTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp CCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred ccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 000111345778999987 566643
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.061 Score=64.48 Aligned_cols=197 Identities=14% Similarity=0.105 Sum_probs=117.5
Q ss_pred CCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEEC
Q 000054 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDT 2351 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl 2351 (2548)
.-...+.|+ ++.++.+.+.+|.|+++|+++++..... +....-. ..+.++++.+.... -.++.+.++|.
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-------l~~~~Fg-eGit~~g~~Ly~lt--w~~~~v~V~D~ 123 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-------RLGNIFA-EGLASDGERLYQLT--WTEGLLFTWSG 123 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-------ECTTCCE-EEEEECSSCEEEEE--SSSCEEEEEET
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-------CCCCcce-eEEEEeCCEEEEEE--ccCCEEEEEEC
Confidence 446788887 4677778888899999999998644321 2221111 11233444444433 27899999999
Q ss_pred CCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccC
Q 000054 2352 LAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADA 2431 (2548)
Q Consensus 2352 ~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafS 2431 (2548)
.+ .+.+..+..- ..-+.+++ + +..|+.+..++.|.++| ..+.+.+..+....
T Consensus 124 ~T--l~~~~ti~~~-~eGwGLt~--D-------g~~L~vSdGs~~l~~iD---p~T~~v~~~I~V~~------------- 175 (268)
T 3nok_A 124 MP--PQRERTTRYS-GEGWGLCY--W-------NGKLVRSDGGTMLTFHE---PDGFALVGAVQVKL------------- 175 (268)
T ss_dssp TT--TEEEEEEECS-SCCCCEEE--E-------TTEEEEECSSSEEEEEC---TTTCCEEEEEECEE-------------
T ss_pred Cc--CcEEEEEeCC-CceeEEec--C-------CCEEEEECCCCEEEEEc---CCCCeEEEEEEeCC-------------
Confidence 76 6666666642 22244443 3 34666666689999999 66677666651000
Q ss_pred CCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCC
Q 000054 2432 QTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGG 2511 (2548)
Q Consensus 2432 pdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~ 2511 (2548)
+ ...-..++.+.|. +|++.+..-.+..|.+-|.++|+.+..+.-.-..... +......+
T Consensus 176 -~-----------------g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~--~~~~~~~~ 234 (268)
T 3nok_A 176 -R-----------------GQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAV--AGQVTNPE 234 (268)
T ss_dssp -T-----------------TEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHH--TTTCCCTT
T ss_pred -C-----------------CcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccc--cccccCcC
Confidence 0 0011245677776 7766655556889999999999999988421000000 00001112
Q ss_pred ceeecEEEEEEcCCe---EEEEE
Q 000054 2512 VVRAGVTDIQVVSRG---FLSCG 2531 (2548)
Q Consensus 2512 ~V~a~VtsLafSPdG---LaSGS 2531 (2548)
.....||++|++ ++||-
T Consensus 235 ---~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 235 ---AVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp ---CCEEEEEECTTTCCEEEEET
T ss_pred ---CceEEEEEcCCCCEEEEeCC
Confidence 345778999987 55663
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.32 Score=64.30 Aligned_cols=69 Identities=14% Similarity=0.137 Sum_probs=43.3
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC------CCcEEEEEcCCCc
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL------DGTVCTWQLEVGG 2304 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~------DGtVrVWDl~tgk 2304 (2548)
+..+++++.|+.+..+|..+|+.+-.+.... +..........+ + .+..+++++. +|.|..+|.++|+
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~-~~~~~~~~~~P~--v----~~g~v~vg~~~~~~~~~g~v~a~D~~tG~ 187 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCD-PKVGSTLTQAPF--V----AKDTVLMGCSGAELGVRGAVNAFDLKTGE 187 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC-GGGTCBCCSCCE--E----ETTEEEEECBCGGGTCCCEEEEEETTTCC
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCC-CCccceeccCCE--E----ECCEEEEEecCCccCCCCEEEEEECCCCc
Confidence 4567788889999999999999887765311 100000011111 1 1345666654 7999999999887
Q ss_pred cc
Q 000054 2305 RS 2306 (2548)
Q Consensus 2305 ~i 2306 (2548)
..
T Consensus 188 ~~ 189 (571)
T 2ad6_A 188 LK 189 (571)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.76 Score=55.10 Aligned_cols=202 Identities=12% Similarity=0.013 Sum_probs=110.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC--cEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG--TVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG--tVrVWD 2299 (2548)
...++++++|+++++-..++.|..||.... ....+.. .+....+++.++|+.+++..... .|..+|
T Consensus 34 pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~-----------~~~p~gia~~~dG~l~vad~~~~~~~v~~~d 101 (306)
T 2p4o_A 34 LENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV-----------EGKVSGLAFTSNGDLVATGWNADSIPVVSLV 101 (306)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC-----------SSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred cceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC-----------CCCceeEEEcCCCcEEEEeccCCcceEEEEc
Confidence 467889999998877778899999987653 3332221 14588999999999665544332 466667
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcce--------eeeccCCCeEE
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA--------SITCHEGGARS 2371 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~--------sl~gHs~~VtS 2371 (2548)
..+++...+.... -......+ +..+++..+++ . +.++.|..+|......+... .....-...+.
T Consensus 102 ~~~g~~~~~~~~~----~~~~~~g~-~~~~~~~~~v~-d--~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~png 173 (306)
T 2p4o_A 102 KSDGTVETLLTLP----DAIFLNGI-TPLSDTQYLTA-D--SYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG 173 (306)
T ss_dssp CTTSCEEEEEECT----TCSCEEEE-EESSSSEEEEE-E--TTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred CCCCeEEEEEeCC----CccccCcc-cccCCCcEEEE-E--CCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCC
Confidence 6666422111000 00011112 23344444444 3 25788888887531011100 00011123445
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK 2451 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~ 2451 (2548)
+ +++. +.+.++-...+.|..+|+.. .++. . ...++..
T Consensus 174 i--s~dg------~~lyv~d~~~~~I~~~~~~~--~g~~-~------------------------------~~~~~~~-- 210 (306)
T 2p4o_A 174 L--KRFG------NFLYVSNTEKMLLLRIPVDS--TDKP-G------------------------------EPEIFVE-- 210 (306)
T ss_dssp E--EEET------TEEEEEETTTTEEEEEEBCT--TSCB-C------------------------------CCEEEEE--
T ss_pred c--CcCC------CEEEEEeCCCCEEEEEEeCC--CCCC-C------------------------------ccEEEec--
Confidence 5 5552 33556666778898888431 1111 0 0011110
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEE
Q 000054 2452 AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLV 2489 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell 2489 (2548)
......++++++|+++++....+.|.++|.. |+..
T Consensus 211 --~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~ 245 (306)
T 2p4o_A 211 --QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTT 245 (306)
T ss_dssp --SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEE
T ss_pred --cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEE
Confidence 0233568899999988777778899999975 6653
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.45 Score=57.25 Aligned_cols=202 Identities=10% Similarity=0.052 Sum_probs=110.5
Q ss_pred EEEEEEcC-CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEcc-CCCEEEEEeC--------
Q 000054 2222 TRAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH-YGHRFASAAL-------- 2291 (2548)
Q Consensus 2222 V~~VsfSP-dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSP-dG~~LaSGS~-------- 2291 (2548)
...+++.+ +|+++ .+...+.|..+|..++.. ..+..... .........+++.+ +|+..++-..
T Consensus 82 p~gi~~~~~~g~l~-v~d~~~~i~~~d~~~g~~-~~~~~~~~-----~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~ 154 (322)
T 2fp8_A 82 TYDISYNLQNNQLY-IVDCYYHLSVVGSEGGHA-TQLATSVD-----GVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGV 154 (322)
T ss_dssp EEEEEEETTTTEEE-EEETTTEEEEECTTCEEC-EEEESEET-----TEECSCEEEEEECTTTCCEEEEESCSSCCTTCH
T ss_pred CceEEEcCCCCcEE-EEECCCCEEEEeCCCCEE-EEecccCC-----CCcccccceEEEecCCCEEEEECCccccccccc
Confidence 36777887 56544 444445588888765532 22211000 01124578899999 9987666432
Q ss_pred ---------CCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee
Q 000054 2292 ---------DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI 2362 (2548)
Q Consensus 2292 ---------DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl 2362 (2548)
+|.|..+|..+++..... ..+ ..... .+++++|+.+..+. +.++.|..+|+..........+
T Consensus 155 ~~~~~~~~~~g~v~~~d~~~~~~~~~~-----~~~-~~p~g-ia~~~dg~~lyv~d--~~~~~I~~~~~~~~~~~~~~~~ 225 (322)
T 2fp8_A 155 QQIMDTSDKTGRLIKYDPSTKETTLLL-----KEL-HVPGG-AEVSADSSFVLVAE--FLSHQIVKYWLEGPKKGTAEVL 225 (322)
T ss_dssp HHHHHHTCCCEEEEEEETTTTEEEEEE-----EEE-SCCCE-EEECTTSSEEEEEE--GGGTEEEEEESSSTTTTCEEEE
T ss_pred ceehcccCCCceEEEEeCCCCEEEEec-----cCC-ccCcc-eEECCCCCEEEEEe--CCCCeEEEEECCCCcCCccceE
Confidence 367888887655321110 001 11222 35889998776664 2568899999874211112222
Q ss_pred eccCCCeEEEEEccCCCCCCCCCCEEEEEeC----------CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCC
Q 000054 2363 TCHEGGARSISVFDNDLGSGSVSPLIVTGGK----------GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQ 2432 (2548)
Q Consensus 2363 ~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~----------DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSp 2432 (2548)
....+ ...+++.++ +.+.++... .+.|..+| . .++.+..+..
T Consensus 226 ~~~~g-P~gi~~d~~-------G~l~va~~~~~~~~~~~~~~~~v~~~d---~-~G~~~~~~~~---------------- 277 (322)
T 2fp8_A 226 VKIPN-PGNIKRNAD-------GHFWVSSSEELDGNMHGRVDPKGIKFD---E-FGNILEVIPL---------------- 277 (322)
T ss_dssp EECSS-EEEEEECTT-------SCEEEEEEEETTSSTTSCEEEEEEEEC---T-TSCEEEEEEC----------------
T ss_pred EeCCC-CCCeEECCC-------CCEEEEecCcccccccCCCccEEEEEC---C-CCCEEEEEEC----------------
Confidence 21223 777888777 566666544 35677776 2 2444444311
Q ss_pred CCCCccCCCCCceEEEcccCC-CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 000054 2433 TGSGSKPGDQNGMLWYIPKAH-LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2433 dGk~v~s~D~sv~Iwdi~~gH-~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~T 2485 (2548)
..+. -..++++++ .+++++++....+.|.++++..
T Consensus 278 -----------------~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 278 -----------------PPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp -----------------CTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred -----------------CCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 0111 223455655 3666666666778888888753
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.99 E-value=1.5 Score=59.66 Aligned_cols=285 Identities=9% Similarity=0.046 Sum_probs=151.8
Q ss_pred EEEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEe----ccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEE
Q 000054 2221 STRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYG----VLPAANVPPPYALASISALQFDHYGHRFASAALDGTVC 2296 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~----~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVr 2296 (2548)
.+.++...++|.+. .|+..+-|.++|..++....... ...............|.++...++|. |-.|..++-|.
T Consensus 259 ~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~ 336 (781)
T 3v9f_A 259 YIFSIKQLKDNKLW-IATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGIN 336 (781)
T ss_dssp CEEEEEECTTSEEE-EEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEE
T ss_pred eEEEEEECCCCCEE-EEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEE
Confidence 36888877777644 45564568888987665322110 00000001122346799999999887 55677777788
Q ss_pred EEEcCCCcccccccCcc-ceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee----eccCCCe
Q 000054 2297 TWQLEVGGRSNVRPMES-CLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI----TCHEGGA 2369 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s-~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl----~gHs~~V 2369 (2548)
.++..++.......... ..........|.+ ...+|.+.+.. .++-|..+|.... ....+ ......|
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt----~~~Gl~~~~~~~~---~~~~~~~~~~~~~~~v 409 (781)
T 3v9f_A 337 FISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGT----DGGGINVFENGKR---VAIYNKENRELLSNSV 409 (781)
T ss_dssp EECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEE----BSSCEEEEETTEE---EEECC-----CCCSBE
T ss_pred EeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEe----CCCcEEEEECCCC---eEEEccCCCCCCCcce
Confidence 88876553221110000 0000112234554 45566665543 4667888987531 11111 1234578
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCCCceEEE
Q 000054 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQNGMLWY 2448 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~sv~Iwd 2448 (2548)
.++...++ + .|..|+.++-+..+| ..+++.. .+... .........+...++|.+ +++. +.+..++
T Consensus 410 ~~i~~d~~-------g-~lWigt~~~Gl~~~~---~~~~~~~-~~~~~-~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~ 475 (781)
T 3v9f_A 410 LCSLKDSE-------G-NLWFGTYLGNISYYN---TRLKKFQ-IIELE-KNELLDVRVFYEDKNKKIWIGTH-AGVFVID 475 (781)
T ss_dssp EEEEECTT-------S-CEEEEETTEEEEEEC---SSSCEEE-ECCST-TTCCCCEEEEEECTTSEEEEEET-TEEEEEE
T ss_pred EEEEECCC-------C-CEEEEeccCCEEEEc---CCCCcEE-EeccC-CCCCCeEEEEEECCCCCEEEEEC-CceEEEe
Confidence 88887665 3 455677777789998 3344332 22111 111112233444555555 4444 3445554
Q ss_pred ccc--------CC-----CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceee
Q 000054 2449 IPK--------AH-----LGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRA 2515 (2548)
Q Consensus 2449 i~~--------gH-----~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a 2515 (2548)
... .. ...|.++..+++|.+.+....+| |..+|..+++.. .+.. . .+- ...
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~-~~~~---~--------~~l---~~~ 539 (781)
T 3v9f_A 476 LASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR-KFNQ---Y--------EGF---CSN 539 (781)
T ss_dssp SSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE-EECT---T--------TTC---SCS
T ss_pred CCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE-EccC---C--------CCC---CCC
Confidence 211 11 35799999999998776543345 777898766543 3310 0 011 113
Q ss_pred cEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2516 GVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2516 ~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
.|.++..+++| |-.|+.+|.|..||..++
T Consensus 540 ~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~ 569 (781)
T 3v9f_A 540 TINQIYRSSKGQMWLATGEGLVCFPSARNF 569 (781)
T ss_dssp CEEEEEECTTSCEEEEETTEEEEESCTTTC
T ss_pred eeEEEEECCCCCEEEEECCCceEEECCCCC
Confidence 46777888888 666666666577777654
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=95.97 E-value=1.1 Score=59.56 Aligned_cols=73 Identities=10% Similarity=0.057 Sum_probs=43.3
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEc-cCCC-EEEEEe------CCCcEEEEEcCC
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFD-HYGH-RFASAA------LDGTVCTWQLEV 2302 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFS-PdG~-~LaSGS------~DGtVrVWDl~t 2302 (2548)
+..++.++.|+.|.-+|..+|+.+-.+....... .......++ +.=. .+|+ .+++++ .+|.|..+|.++
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~-~~~~~~sP~--v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t 193 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGA-GYTMTGAPT--IVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT 193 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGG-TCBCCSCCE--EEECTTTCCEEEEECCBCGGGCCBCEEEEECTTT
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCc-CcccccCCE--EeCCCcCCcEEEEEeccccccCCCCEEEEEECCC
Confidence 4567778899999999999999887765321000 000011111 1101 1233 566654 378999999998
Q ss_pred Cccc
Q 000054 2303 GGRS 2306 (2548)
Q Consensus 2303 gk~i 2306 (2548)
|+..
T Consensus 194 G~~~ 197 (582)
T 1flg_A 194 GEEI 197 (582)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 8754
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.90 E-value=2.2 Score=50.85 Aligned_cols=212 Identities=7% Similarity=0.025 Sum_probs=124.0
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
+..++|+|++. ++++...++.|...|.. ++.+..+.. .+ ....-.|++.+++.++++.-.++.+.++++
T Consensus 29 lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l-~g--------~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 29 ISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL-DF--------VKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC-SS--------CSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred cceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec-CC--------CCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 68899999766 45567888999999987 777776632 11 145788899988887777667789999988
Q ss_pred CCCcccccccCcc--ceec-cCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee-------ccCCCeE
Q 000054 2301 EVGGRSNVRPMES--CLCF-SSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT-------CHEGGAR 2370 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s--~~t~-~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~-------gHs~~Vt 2370 (2548)
.....+....... .... ....-.-.+++|.++.+.++... ....|..|+-.. ....+..+. .+...+.
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~-~p~~i~~~~g~~-~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK-NPIEVYKVNGLL-SSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEES-SSEEEEEEESTT-CSSCCEEEECHHHHHTCCSSCCC
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECc-CCceEEEEcccc-cCCceeeecchhhccccccCCce
Confidence 7554211100000 0000 01111334688888766665411 222455555111 111222221 1334678
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcc
Q 000054 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP 2450 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~ 2450 (2548)
+++++|.. +.+++.....+.+.++|.. |+.+..+........ +
T Consensus 177 ~l~~dp~t------g~lliLS~~s~~L~~~d~~----g~~~~~~~L~~g~~~---------------------------l 219 (255)
T 3qqz_A 177 GAEFNQQK------NTLLVLSHESRALQEVTLV----GEVIGEMSLTKGSRG---------------------------L 219 (255)
T ss_dssp EEEEETTT------TEEEEEETTTTEEEEECTT----CCEEEEEECSTTGGG---------------------------C
T ss_pred eEEEcCCC------CeEEEEECCCCeEEEEcCC----CCEEEEEEcCCccCC---------------------------c
Confidence 99999985 7788888889999999942 454433311000000 0
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 000054 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDA 2483 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl 2483 (2548)
..--..-..|+|+++|++.++ ++.+.+.++.-
T Consensus 220 ~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 220 SHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp SSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred ccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 001135578999999986655 67666666653
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.85 E-value=1.2 Score=53.27 Aligned_cols=209 Identities=8% Similarity=0.053 Sum_probs=116.6
Q ss_pred CCeEEEEEccCCCEE-EEEeCCCcEEEEEcCCCcccccccCccceeccCC--cccEEEEcCCCCEEEEEeccCCCCeEEE
Q 000054 2272 ASISALQFDHYGHRF-ASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSH--AMDVSYITSSGSVIAAAGHSSNGINVVV 2348 (2548)
Q Consensus 2272 ~~VtsVaFSPdG~~L-aSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH--~~~V~afSpdGslLATgG~SS~DGtVrI 2348 (2548)
+.+..++|+|+++.| ++...++.|...|.. ++.....+ +.+. ...| ++.+++.++++.- .++.+.+
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~------l~g~~D~EGI-a~~~~g~~~vs~E---~~~~l~~ 95 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP------LDFVKDLETI-EYIGDNQFVISDE---RDYAIYV 95 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE------CSSCSSEEEE-EECSTTEEEEEET---TTTEEEE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe------cCCCCChHHe-EEeCCCEEEEEEC---CCCcEEE
Confidence 679999999976655 457778888888887 54332211 2221 2233 3556776655542 5678888
Q ss_pred EECCCCCC-Ccceeee------ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCC
Q 000054 2349 WDTLAPPT-SSRASIT------CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGS 2421 (2548)
Q Consensus 2349 WDl~t~~~-k~v~sl~------gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s 2421 (2548)
+++..... ..+.... ....+...++|.|. +..|.++...+...+|.++.......+
T Consensus 96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~-------~~~L~va~E~~p~~i~~~~g~~~~~~l---------- 158 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQ-------DHTFWFFKEKNPIEVYKVNGLLSSNEL---------- 158 (255)
T ss_dssp EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETT-------TTEEEEEEESSSEEEEEEESTTCSSCC----------
T ss_pred EEcCCCCeeeeeeeeccccccccccCCcceEEEeCC-------CCEEEEEECcCCceEEEEcccccCCce----------
Confidence 88764321 1112221 23456789999998 445555555555566653211111111
Q ss_pred CccccccccCCCCCCccCCCCCceEEEc----ccCCCCCEEEEEEeCCC-CEEEEEeCCCcEEEEECCCCcEEEEecccc
Q 000054 2422 SINTCAHADAQTGSGSKPGDQNGMLWYI----PKAHLGSVTRISTVPNT-SLFLTGSKDGDVKLWDAKAAQLVYHWSKLH 2496 (2548)
Q Consensus 2422 ~~~~~~vafSpdGk~v~s~D~sv~Iwdi----~~gH~~~VtsLafSPdG-~~LaSGS~DGtIrIWDl~Tgell~tL~~~H 2496 (2548)
.+.+. ...+...+.+++++|.. ++++....+..|.++|.. |+.+..+.-..
T Consensus 159 -----------------------~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~ 214 (255)
T 3qqz_A 159 -----------------------HISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTK 214 (255)
T ss_dssp -----------------------EEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECST
T ss_pred -----------------------eeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCC
Confidence 11100 01123356899999965 455555567789999965 66776663111
Q ss_pred cccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEEC
Q 000054 2497 ERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2497 s~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL 2541 (2548)
.+.|-...+ ...-.|+|+++| |...+..+.+..+.-
T Consensus 215 --------g~~~l~~~~-~qpEGia~d~~G~lyIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 215 --------GSRGLSHNI-KQAEGVAMDASGNIYIVSEPNRFYRFTP 251 (255)
T ss_dssp --------TGGGCSSCC-CSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred --------ccCCccccc-CCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence 011111112 123567999999 666677776655543
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.3 Score=64.57 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=25.8
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000054 2464 PNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2464 PdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
..+..++.++.||.|+.||.++|+.+.+++
T Consensus 473 t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 473 TKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 356677789999999999999999998873
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.44 Score=63.42 Aligned_cols=159 Identities=8% Similarity=0.024 Sum_probs=87.3
Q ss_pred EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe------CCCcEEEEEcCCCccc
Q 000054 2233 FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA------LDGTVCTWQLEVGGRS 2306 (2548)
Q Consensus 2233 ~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS------~DGtVrVWDl~tgk~i 2306 (2548)
+++.++.|+.|.-+|..+|+.+-...... +..........+ + .++ .+++++ .+|.|..+|.++|+..
T Consensus 123 rV~v~t~dg~l~AlDa~TG~~~W~~~~~~-~~~~~~~~ssP~--v---~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~ 195 (599)
T 1w6s_A 123 LILKTQLDGNVAALNAETGETVWKVENSD-IKVGSTLTIAPY--V---VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQV 195 (599)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC-GGGTCBCCSCCE--E---ETT-EEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred EEEEEcCCCEEEEEECCCCCEEEeecCCC-CCccceeecCCE--E---ECC-EEEEEecccccCCCCeEEEEECCCCcEE
Confidence 37788899999999999999877654311 000000001111 1 133 455554 3899999999998754
Q ss_pred ccccCccce------------------------eccC-----CcccE---EEEcCCCCEEEEEeccCCC-----------
Q 000054 2307 NVRPMESCL------------------------CFSS-----HAMDV---SYITSSGSVIAAAGHSSNG----------- 2343 (2548)
Q Consensus 2307 ~i~p~~s~~------------------------t~~g-----H~~~V---~afSpdGslLATgG~SS~D----------- 2343 (2548)
-........ +..+ -...+ .++.++..+++.+. .+
T Consensus 196 W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~---g~~~p~~~~~r~g 272 (599)
T 1w6s_A 196 WRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT---GNPAPWNETMRPG 272 (599)
T ss_dssp EEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC---CCCSCSCGGGSCS
T ss_pred EEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC---CCCccccCcccCC
Confidence 211110000 0000 00011 13556666666653 22
Q ss_pred -----CeEEEEECCCCCCCcceeeec--cC--------CCeEEEEEc-cCCCCCCCCC---CEEEEEeCCCcEEEEeCCc
Q 000054 2344 -----INVVVWDTLAPPTSSRASITC--HE--------GGARSISVF-DNDLGSGSVS---PLIVTGGKGGDVGIHDFRY 2404 (2548)
Q Consensus 2344 -----GtVrIWDl~t~~~k~v~sl~g--Hs--------~~VtSLafs-P~dlg~gs~g---~lLVSGS~DGtVrLWDLR~ 2404 (2548)
+.|..+|.++ ++.+-.++. |. ..+. +... .+ + ..++.++.+|.+.++|
T Consensus 273 d~~y~~sv~Ald~~T--G~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~-------G~~~~~v~~~~~~G~l~~lD--- 339 (599)
T 1w6s_A 273 DNKWTMTIFGRDADT--GEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKD-------GKARKLLTHPDRNGIVYTLD--- 339 (599)
T ss_dssp CCTTSSEEEEEETTT--CCEEEEEESSTTCSSCCCCCCCCEE-EEEECTT-------SCEEEEEEEECTTSEEEEEE---
T ss_pred CccccceEEEEeCCC--CceeeEeecCCCccccccCCCccEE-EeccccC-------CcEEEEEEEECCCcEEEEEE---
Confidence 4788889876 555544442 21 1111 1111 22 4 4678889999999999
Q ss_pred cccCceeeee
Q 000054 2405 IATGKTKKHK 2414 (2548)
Q Consensus 2405 l~TGk~l~tl 2414 (2548)
..+|+.+...
T Consensus 340 ~~tG~~lw~~ 349 (599)
T 1w6s_A 340 RTDGALVSAN 349 (599)
T ss_dssp TTTCCEEEEE
T ss_pred CCCCCEeecc
Confidence 6678887665
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.17 Score=67.68 Aligned_cols=72 Identities=8% Similarity=0.031 Sum_probs=47.6
Q ss_pred EEEEcCCCCEEEEEEC-CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe-CC-----CcEE
Q 000054 2224 AFSSHPLRPFFLVGSS-NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LD-----GTVC 2296 (2548)
Q Consensus 2224 ~VsfSPdG~~LASGS~-DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS-~D-----GtVr 2296 (2548)
++++.++|.+++.|+. ++.+.+||..+++-... ...+. + ..-.+++..++|+.++.|+ .+ ..+.
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~-~~~~~---~-----R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e 317 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPG-PDMQV---A-----RGYQSSATMSDGRVFTIGGSWSGGVFEKNGE 317 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEEC-CCCSS---C-----CSSCEEEECTTSCEEEECCCCCSSSCCCCEE
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcCCceeEC-CCCCc---c-----ccccceEEecCCeEEEEeCcccCCcccccce
Confidence 4566689999999884 55899999887653322 11111 0 1123455567899999988 44 4789
Q ss_pred EEEcCCCc
Q 000054 2297 TWQLEVGG 2304 (2548)
Q Consensus 2297 VWDl~tgk 2304 (2548)
+||..++.
T Consensus 318 ~yd~~t~~ 325 (656)
T 1k3i_A 318 VYSPSSKT 325 (656)
T ss_dssp EEETTTTE
T ss_pred EeCCCCCc
Confidence 99998764
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.57 E-value=3.1 Score=56.58 Aligned_cols=283 Identities=12% Similarity=0.061 Sum_probs=149.1
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.++...++|.+.+. +.+ -+.+||..+++... +...... +.......|.++...++|. +..|+..+-|.++|..
T Consensus 213 i~~i~~d~~g~lwig-t~~-Gl~~~d~~~~~~~~-~~~~~~~--~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~ 286 (781)
T 3v9f_A 213 VRCIYKDTNGNIWIG-TSK-GLALFNANTETFTN-FHNNPGN--IHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQ 286 (781)
T ss_dssp EEEEEECTTCCEEEE-ETT-EEEEEETTTTEEEC--------------CCCCEEEEEECTTSE-EEEEESSSCEEEEETT
T ss_pred eeEEEEcCCCCEEEE-eCC-cHheECCCCCcEEE-EEcCCCc--cccccCceEEEEEECCCCC-EEEEeCCCCeEEECCC
Confidence 677887788876654 444 58899987665332 1110000 0011236799999988887 4556664567788887
Q ss_pred CCccccccc--C----ccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee----------
Q 000054 2302 VGGRSNVRP--M----ESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT---------- 2363 (2548)
Q Consensus 2302 tgk~i~i~p--~----~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~---------- 2363 (2548)
++....... + .......-....|.+ ...+|.+-+.. .++-|..++.... ....+.
T Consensus 287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt----~~~Gl~~~~~~~~---~~~~~~~~~~~~~~~~ 359 (781)
T 3v9f_A 287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGT----WGGGINFISNAPP---TFHTWSYSPTQMNESS 359 (781)
T ss_dssp CC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEE----BSSCEEEECSSCC---SCEEEC----CCCSSC
T ss_pred CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEe----cCCeEEEeCCCCC---cceeeccCccccccCC
Confidence 654221110 0 000001112334554 45667665543 5678888987642 222221
Q ss_pred ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-ccCCCC
Q 000054 2364 CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG-SKPGDQ 2442 (2548)
Q Consensus 2364 gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~-v~s~D~ 2442 (2548)
.....|.++...+++ .|..|+.++-|..+|. .++.. ..+.............+...++|.+ ++..++
T Consensus 360 l~~~~v~~i~~d~~g--------~lWigt~~~Gl~~~~~---~~~~~-~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~ 427 (781)
T 3v9f_A 360 LSNKVVSSVCDDGQG--------KLWIGTDGGGINVFEN---GKRVA-IYNKENRELLSNSVLCSLKDSEGNLWFGTYLG 427 (781)
T ss_dssp CSSSCEEEEEECTTS--------CEEEEEBSSCEEEEET---TEEEE-ECC-----CCCSBEEEEEECTTSCEEEEETTE
T ss_pred CCCcceEEEEEcCCC--------CEEEEeCCCcEEEEEC---CCCeE-EEccCCCCCCCcceEEEEECCCCCEEEEeccC
Confidence 123568888876652 5667777777999994 22222 2211111111112223344455655 555444
Q ss_pred CceEEEccc----------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCc
Q 000054 2443 NGMLWYIPK----------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGV 2512 (2548)
Q Consensus 2443 sv~Iwdi~~----------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~ 2512 (2548)
.+..++... .....|.++..+++|.+.+. +. +-|.++|..+++...... . ... ..
T Consensus 428 Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~~~~~~~-~-----------~~~-~~ 492 (781)
T 3v9f_A 428 NISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKKVIHHYD-T-----------SNS-QL 492 (781)
T ss_dssp EEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSSCCEEEC-T-----------TTS-SC
T ss_pred CEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCeEEeccc-C-----------ccc-cc
Confidence 444444211 13457999999888876654 44 458889988766433210 0 000 00
Q ss_pred eeecEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2513 VRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2513 V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
....|.++..+++| |-.|+.++-+..|+..++
T Consensus 493 ~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~ 525 (781)
T 3v9f_A 493 LENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQ 525 (781)
T ss_dssp SCSCEEEEEECTTCCEEEEESSSCEEEECTTCC
T ss_pred ccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCC
Confidence 01346777888888 767776555777776654
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.50 E-value=5 Score=50.16 Aligned_cols=228 Identities=11% Similarity=-0.015 Sum_probs=124.9
Q ss_pred CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEEcCCCccccccc
Q 000054 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGTVCTWQLEVGGRSNVRP 2310 (2548)
Q Consensus 2232 ~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DGtVrVWDl~tgk~i~i~p 2310 (2548)
.+|+.+. ...|+..++..+........ ...+..++|++.+..|+.+ ...+.|..++.+.+....+..
T Consensus 88 ~~l~~~~-~~~I~~i~~~~~~~~~~~~~-----------~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 88 PVLLFAN-RIDIRQVLPHRSEYTLLLNN-----------LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp CEEEEEC-BSCEEEECTTSCCCEEEECS-----------CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred ceeEeec-CccceeeccCCCcEEEEecC-----------CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 3444433 35688888776554333321 2568899999865555544 456789899987653211110
Q ss_pred CccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEE
Q 000054 2311 MESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVT 2390 (2548)
Q Consensus 2311 ~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVS 2390 (2548)
. -...... .++.+.+..|+.+. ...+.|.+.++.. ......+.........+++.|.+ +.+.++
T Consensus 156 ~-----~~~~p~g-lavd~~~g~lY~~d--~~~~~I~~~~~dg--~~~~~l~~~~l~~P~giavdp~~------g~ly~t 219 (386)
T 3v65_B 156 T-----GLESPGG-LAVDWVHDKLYWTD--SGTSRIEVANLDG--AHRKVLLWQSLEKPRAIALHPME------GTIYWT 219 (386)
T ss_dssp S-----SCSCCCC-EEEETTTTEEEEEE--TTTTEEEECBTTS--CSCEEEECSSCSCEEEEEEETTT------TEEEEE
T ss_pred C-----CCCCccE-EEEEeCCCeEEEEc--CCCCeEEEEeCCC--CceEEeecCCCCCCcEEEEEcCC------CeEEEe
Confidence 0 0011122 24666555555443 3567888888753 22222222333567889999874 555555
Q ss_pred EeCC-CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEE
Q 000054 2391 GGKG-GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLF 2469 (2548)
Q Consensus 2391 GS~D-GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~L 2469 (2548)
-..+ +.|...|+. |.....+ . ...-..-..|+++|++..|
T Consensus 220 d~~~~~~I~r~~~d----G~~~~~~--------------------------------~---~~~~~~PnGlavd~~~~~l 260 (386)
T 3v65_B 220 DWGNTPRIEASSMD----GSGRRII--------------------------------A---DTHLFWPNGLTIDYAGRRM 260 (386)
T ss_dssp ECSSSCEEEEEETT----SCSCEEE--------------------------------E---CSSCSCEEEEEEEGGGTEE
T ss_pred ccCCCCEEEEEeCC----CCCcEEE--------------------------------E---ECCCCCeeeEEEeCCCCEE
Confidence 5444 677777742 1211111 0 1122346789999876655
Q ss_pred EEE-eCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2470 LTG-SKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2470 aSG-S~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
+.+ +..+.|..+|+........+. .+. .....+++..+. +++-...+.|..++..++
T Consensus 261 Y~aD~~~~~I~~~d~dG~~~~~~~~-------------~~~-----~~P~giav~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 261 YWVDAKHHVIERANLDGSHRKAVIS-------------QGL-----PHPFAITVFEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp EEEETTTTEEEEECTTSCSCEEEEC-------------SSC-----SSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred EEEECCCCEEEEEeCCCCeeEEEEE-------------CCC-----CCceEEEEECCEEEEeeCCCCeEEEEECCCC
Confidence 555 456789999986433222120 010 112455675555 556667778888874443
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=95.21 E-value=2.1 Score=51.27 Aligned_cols=160 Identities=6% Similarity=-0.041 Sum_probs=86.1
Q ss_pred EEEEEEcCCCCEEEEEECCC--eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNT--HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DG--sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
...+++.++|+++++....+ .|..+|..+++...... .+. ......++..+++..+++-..+|.|.++|
T Consensus 74 p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~-~~~--------~~~~~g~~~~~~~~~~v~d~~~g~i~~~d 144 (306)
T 2p4o_A 74 VSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLT-LPD--------AIFLNGITPLSDTQYLTADSYRGAIWLID 144 (306)
T ss_dssp EEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEE-CTT--------CSCEEEEEESSSSEEEEEETTTTEEEEEE
T ss_pred ceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEe-CCC--------ccccCcccccCCCcEEEEECCCCeEEEEe
Confidence 47788899999777654432 46667777776543322 111 12234555555555455544688888888
Q ss_pred cCCCc-ccc-cccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCC--cceeeeccCCCeEEEEEc
Q 000054 2300 LEVGG-RSN-VRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTS--SRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2300 l~tgk-~i~-i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k--~v~sl~gHs~~VtSLafs 2375 (2548)
..++. ... ..+................++++++.++.+. +..+.|..+|+... ++ ....+. .......+++.
T Consensus 145 ~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d--~~~~~I~~~~~~~~-g~~~~~~~~~-~~~~P~gi~vd 220 (306)
T 2p4o_A 145 VVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSN--TEKMLLLRIPVDST-DKPGEPEIFV-EQTNIDDFAFD 220 (306)
T ss_dssp TTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEE--TTTTEEEEEEBCTT-SCBCCCEEEE-ESCCCSSEEEB
T ss_pred CCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEe--CCCCEEEEEEeCCC-CCCCccEEEe-ccCCCCCeEEC
Confidence 76532 110 0000000000011111122477888777765 46789999998641 11 112221 11334556777
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEe
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGDVGIHD 2401 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWD 2401 (2548)
++ +.+.++....+.|.++|
T Consensus 221 ~d-------G~l~va~~~~~~V~~~~ 239 (306)
T 2p4o_A 221 VE-------GNLYGATHIYNSVVRIA 239 (306)
T ss_dssp TT-------CCEEEECBTTCCEEEEC
T ss_pred CC-------CCEEEEeCCCCeEEEEC
Confidence 66 66777766778888888
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.05 E-value=4.4 Score=51.48 Aligned_cols=151 Identities=11% Similarity=0.085 Sum_probs=88.5
Q ss_pred EEEEEcC-CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC-C----cEE
Q 000054 2223 RAFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD-G----TVC 2296 (2548)
Q Consensus 2223 ~~VsfSP-dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D-G----tVr 2296 (2548)
..++++| ++..|.++...+.|+.+|..++....... .......|+|+++|++|+.+... + .+.
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-----------~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~ 208 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-----------GLSKVRTICWTHEADSMIITNDQNNNDRPNNY 208 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-----------CCSCEEEEEECTTSSEEEEEECCSCTTSEEEE
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-----------CCCCcceEEEeCCCCEEEEEeCCCCcccceEE
Confidence 5667778 35555555554889999988765443321 12568899999999966666542 2 233
Q ss_pred EEEcCCCcccccccCccceeccCCcccEEEEcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeee-ccCCCeEEEEE
Q 000054 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT-CHEGGARSISV 2374 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~-gHs~~VtSLaf 2374 (2548)
+.+. .+..... .... ...|...+ +++| +|.++++-. .++.|..+|... ........ +.......+++
T Consensus 209 ~~~~-~g~~~~~---~~l~-~~~~p~gi-avdp~~g~lyv~d~---~~~~V~~~~~~~--~~~~~~~~~~~~~~P~gia~ 277 (430)
T 3tc9_A 209 ILTR-ESGFKVI---TELT-KGQNCNGA-ETHPINGELYFNSW---NAGQVFRYDFTT--QETTPLFTIQDSGWEFHIQF 277 (430)
T ss_dssp EEEG-GGTSCSE---EEEE-ECSSCCCE-EECTTTCCEEEEET---TTTEEEEEETTT--TEEEEEEECSSSSCCEEEEE
T ss_pred EEeC-CCceeee---eeec-cCCCceEE-EEeCCCCEEEEEEC---CCCEEEEEECCC--CcEEEEEEcCCCCcceeEEE
Confidence 3333 2321100 0111 12233333 4788 677666542 678899999864 22111111 12245788999
Q ss_pred ccCCCCCCCCCC-EEEEEeCCCcEEEEeC
Q 000054 2375 FDNDLGSGSVSP-LIVTGGKGGDVGIHDF 2402 (2548)
Q Consensus 2375 sP~dlg~gs~g~-lLVSGS~DGtVrLWDL 2402 (2548)
+|+ ++ ++++-...+.|..+|.
T Consensus 278 ~pd-------G~~lyv~d~~~~~I~~~~~ 299 (430)
T 3tc9_A 278 HPS-------GNYAYIVVVNQHYILRSDY 299 (430)
T ss_dssp CTT-------SSEEEEEETTTTEEEEEEE
T ss_pred cCC-------CCEEEEEECCCCEEEEEeC
Confidence 998 66 5666667889999884
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.93 Score=61.76 Aligned_cols=114 Identities=7% Similarity=-0.083 Sum_probs=67.0
Q ss_pred CeEEEEEc-cCCCEEEEEeC-CC----cEEEEEcCCC-cccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCC--
Q 000054 2273 SISALQFD-HYGHRFASAAL-DG----TVCTWQLEVG-GRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG-- 2343 (2548)
Q Consensus 2273 ~VtsVaFS-PdG~~LaSGS~-DG----tVrVWDl~tg-k~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~D-- 2343 (2548)
.+...+|+ |||++++.+.. +| +|.++|+.++ +... . .+...... ..|+|||+.|+..... ..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~---~----~~~~~~~~-~~WspDg~~l~y~~~d-~~~~ 245 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA---D----KVSGTNGE-IVWGPDHTSLFYVTKD-ETLR 245 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC---C----CEEEECSC-CEECSSTTEEEEEEEC-TTCC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC---c----cccCceee-EEEecCCCEEEEEEEC-CCCC
Confidence 67889999 99998885533 33 5999999987 5211 0 01111111 2489999877766421 11
Q ss_pred -CeEEEEECCCCCCCcceeee-ccCCCeEEEEEccCCCCCCCCCCEEEEEeC---CCcEEEEeC
Q 000054 2344 -INVVVWDTLAPPTSSRASIT-CHEGGARSISVFDNDLGSGSVSPLIVTGGK---GGDVGIHDF 2402 (2548)
Q Consensus 2344 -GtVrIWDl~t~~~k~v~sl~-gHs~~VtSLafsP~dlg~gs~g~lLVSGS~---DGtVrLWDL 2402 (2548)
..|..+++.++....+..+. .+......+.|+|+ ++.|+..+. ...|.++|+
T Consensus 246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpD-------g~~l~~~~~~~~~~~l~~~d~ 302 (751)
T 2xe4_A 246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAAD-------TNTLCIGSQSPETAEVHLLDL 302 (751)
T ss_dssp EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTT-------SSEEEEEEECSSCEEEEEEES
T ss_pred CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCC-------CCEEEEEecCCCCceEEEEEC
Confidence 35778888653212223332 22345677889998 666665442 335667774
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.98 E-value=9.8 Score=46.79 Aligned_cols=227 Identities=11% Similarity=-0.028 Sum_probs=124.2
Q ss_pred CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEEcCCCccccccc
Q 000054 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGTVCTWQLEVGGRSNVRP 2310 (2548)
Q Consensus 2232 ~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DGtVrVWDl~tgk~i~i~p 2310 (2548)
.+|+.+. ...|+..+.........+. ....+..++|++.+..|+.+ ...+.|..++.+.+....+.
T Consensus 45 ~~ll~~~-~~~I~~i~~~g~~~~~~~~-----------~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~- 111 (349)
T 3v64_C 45 PVLLFAN-RIDIRQVLPHRSEYTLLLN-----------NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV- 111 (349)
T ss_dssp CEEEEEC-BSCEEEECTTSCCEEEEEC-----------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-
T ss_pred ceeEeec-ccceEEEeCCCCeeEEeec-----------CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE-
Confidence 4444433 3457777776554333321 12458999999866656555 45688988998765321111
Q ss_pred CccceeccC-CcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEE
Q 000054 2311 MESCLCFSS-HAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIV 2389 (2548)
Q Consensus 2311 ~~s~~t~~g-H~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLV 2389 (2548)
..+ ....-.++.+.+..|+.+. ...+.|.+.++.. ......+...-.....+++.|.+ +.+.+
T Consensus 112 ------~~~~~~p~glavd~~~g~ly~~d--~~~~~I~~~~~dG--~~~~~l~~~~l~~P~~iavdp~~------g~ly~ 175 (349)
T 3v64_C 112 ------STGLESPGGLAVDWVHDKLYWTD--SGTSRIEVANLDG--AHRKVLLWQSLEKPRAIALHPME------GTIYW 175 (349)
T ss_dssp ------CSSCSCCCEEEEETTTTEEEEEE--TTTTEEEEEETTS--CSCEEEECTTCSCEEEEEEETTT------TEEEE
T ss_pred ------eCCCCCccEEEEecCCCeEEEEc--CCCCeEEEEcCCC--CceEEEEeCCCCCcceEEEecCc------CeEEE
Confidence 111 1111234666555554443 3578899999864 22222222334567899999874 55666
Q ss_pred EEeCC-CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCE
Q 000054 2390 TGGKG-GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSL 2468 (2548)
Q Consensus 2390 SGS~D-GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~ 2468 (2548)
+-..+ +.|...|+. |.....+ ....-..-..++++|++..
T Consensus 176 td~~~~~~I~r~~~d----G~~~~~~-----------------------------------~~~~~~~PnGla~d~~~~~ 216 (349)
T 3v64_C 176 TDWGNTPRIEASSMD----GSGRRII-----------------------------------ADTHLFWPNGLTIDYAGRR 216 (349)
T ss_dssp EECSSSCEEEEEETT----SCSCEES-----------------------------------CCSSCSCEEEEEEETTTTE
T ss_pred eccCCCCEEEEEeCC----CCCcEEE-----------------------------------EECCCCCcceEEEeCCCCE
Confidence 65555 777777742 1211111 0112235678999987665
Q ss_pred EEEE-eCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2469 FLTG-SKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2469 LaSG-S~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
|+.+ +..+.|..+|+........+. ... .....+++..+. +++-...+.|...+..+|
T Consensus 217 lY~aD~~~~~I~~~~~dG~~~~~~~~--------------~~~----~~P~giav~~~~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 217 MYWVDAKHHVIERANLDGSHRKAVIS--------------QGL----PHPFAITVFEDSLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp EEEEETTTTEEEEEETTSCSCEEEEC--------------SSC----SSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred EEEEECCCCEEEEEeCCCCceEEEEe--------------CCC----CCceEEEEECCEEEEecCCCCeEEEEEccCC
Confidence 5555 456789999986433222120 000 112345665555 456666777777774333
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=1.5 Score=58.40 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=25.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000054 2465 NTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2465 dG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
.+.+++.|+.||.++.||.++|+.+.+++
T Consensus 483 agg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 56778889999999999999999998773
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=94.96 E-value=1.6 Score=57.85 Aligned_cols=29 Identities=31% Similarity=0.578 Sum_probs=25.7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000054 2465 NTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2465 dG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
.+.+++.|+.||.++.||.++|+.+.+++
T Consensus 496 agglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 46788889999999999999999998873
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=94.94 E-value=9.1 Score=46.24 Aligned_cols=227 Identities=12% Similarity=-0.003 Sum_probs=124.6
Q ss_pred EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEEcCCC---ccccc
Q 000054 2233 FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGTVCTWQLEVG---GRSNV 2308 (2548)
Q Consensus 2233 ~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DGtVrVWDl~tg---k~i~i 2308 (2548)
+|+.+.. ..|+..|+.+.+....+.. ...+..++|++.+..++.+ ..++.|..++++.. .....
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~-----------~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~ 70 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIPN-----------LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT 70 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEECS-----------CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE
T ss_pred EEEEECC-CeEEEEECCCcceEehhcC-----------CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEE
Confidence 3444333 4688899887765444321 2568899999876555555 45689999998751 11100
Q ss_pred ccCccceecc---CCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCC
Q 000054 2309 RPMESCLCFS---SHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVS 2385 (2548)
Q Consensus 2309 ~p~~s~~t~~---gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g 2385 (2548)
... ..... .++.+.+..++.+. ..++.|.+.|... ......+.........+++.|.+ +
T Consensus 71 -------~~~~~~~~p~g-lavd~~~~~ly~~d--~~~~~I~~~~~~g--~~~~~~~~~~~~~P~~iavdp~~------g 132 (316)
T 1ijq_A 71 -------VISRDIQAPDG-LAVDWIHSNIYWTD--SVLGTVSVADTKG--VKRKTLFRENGSKPRAIVVDPVH------G 132 (316)
T ss_dssp -------EECSSCSCCCE-EEEETTTTEEEEEE--TTTTEEEEEETTS--SSEEEEEECTTCCEEEEEEETTT------T
T ss_pred -------EEeCCCCCcCE-EEEeecCCeEEEEE--CCCCEEEEEeCCC--CceEEEEECCCCCcceEEeCCCC------C
Confidence 011 11222 34666555554443 3678999999863 22222222234567899999863 4
Q ss_pred CEEEEEeCC-CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeC
Q 000054 2386 PLIVTGGKG-GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVP 2464 (2548)
Q Consensus 2386 ~lLVSGS~D-GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSP 2464 (2548)
.++++.... +.|...++. |.....+ ....-.....++++|
T Consensus 133 ~ly~~d~~~~~~I~~~~~d----G~~~~~~-----------------------------------~~~~~~~P~gla~d~ 173 (316)
T 1ijq_A 133 FMYWTDWGTPAKIKKGGLN----GVDIYSL-----------------------------------VTENIQWPNGITLDL 173 (316)
T ss_dssp EEEEEECSSSCEEEEEETT----SCCEEEE-----------------------------------ECSSCSCEEEEEEET
T ss_pred EEEEEccCCCCeEEEEcCC----CCCeEEE-----------------------------------EECCCCCceEEEEec
Confidence 455554433 677777732 2222221 011223567899999
Q ss_pred CCCEEEEE-eCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECC
Q 000054 2465 NTSLFLTG-SKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2465 dG~~LaSG-S~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~ 2542 (2548)
++..|+.+ +..+.|..+|+.... ...+-.. ... .+| ...+++..+. +++-...+.|..++..
T Consensus 174 ~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~--~~~------~~~-------P~giav~~~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 174 LSGRLYWVDSKLHSISSIDVNGGN-RKTILED--EKR------LAH-------PFSLAVFEDKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCS-CEEEEEC--TTT------TSS-------EEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred cCCEEEEEECCCCeEEEEecCCCc-eEEEeec--CCc------cCC-------cEEEEEECCEEEEEECCCCeEEEEeCC
Confidence 77666555 456789999987432 2222000 000 011 2345665555 5566677788888865
Q ss_pred CC
Q 000054 2543 DY 2544 (2548)
Q Consensus 2543 sg 2544 (2548)
++
T Consensus 238 ~g 239 (316)
T 1ijq_A 238 TG 239 (316)
T ss_dssp TC
T ss_pred CC
Confidence 44
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.31 E-value=3.2 Score=51.83 Aligned_cols=204 Identities=12% Similarity=0.010 Sum_probs=115.1
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEE-EEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~L-aSGS~DGtVrVWD 2299 (2548)
..+++|++.+. ++.+-...+.|+.++.+.+.....+.. .......+++++.+..| ++-...+.|.+.+
T Consensus 118 ~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~----------~~~~p~glavd~~~g~lY~~d~~~~~I~~~~ 187 (386)
T 3v65_B 118 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST----------GLESPGGLAVDWVHDKLYWTDSGTSRIEVAN 187 (386)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECS----------SCSCCCCEEEETTTTEEEEEETTTTEEEECB
T ss_pred cEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeC----------CCCCccEEEEEeCCCeEEEEcCCCCeEEEEe
Confidence 47889997655 444556678899999876653333211 01345678888755544 4545567888888
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCC-CeEEEEECCCCCCCcceee-eccCCCeEEEEEccC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG-INVVVWDTLAPPTSSRASI-TCHEGGARSISVFDN 2377 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~D-GtVrIWDl~t~~~k~v~sl-~gHs~~VtSLafsP~ 2377 (2548)
++......... . -...... .++.|.+..++.+. ..+ +.|...++.. .....+ ...-...+.|+++|.
T Consensus 188 ~dg~~~~~l~~----~-~l~~P~g-iavdp~~g~ly~td--~~~~~~I~r~~~dG---~~~~~~~~~~~~~PnGlavd~~ 256 (386)
T 3v65_B 188 LDGAHRKVLLW----Q-SLEKPRA-IALHPMEGTIYWTD--WGNTPRIEASSMDG---SGRRIIADTHLFWPNGLTIDYA 256 (386)
T ss_dssp TTSCSCEEEEC----S-SCSCEEE-EEEETTTTEEEEEE--CSSSCEEEEEETTS---CSCEEEECSSCSCEEEEEEEGG
T ss_pred CCCCceEEeec----C-CCCCCcE-EEEEcCCCeEEEec--cCCCCEEEEEeCCC---CCcEEEEECCCCCeeeEEEeCC
Confidence 76432111100 0 0011112 24677666555544 134 6788888763 232222 222345789999987
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCE
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSV 2457 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~V 2457 (2548)
+ +.+.++-+..+.|..+|+. |...+.+ . .......
T Consensus 257 ~------~~lY~aD~~~~~I~~~d~d----G~~~~~~--------------------------------~---~~~~~~P 291 (386)
T 3v65_B 257 G------RRMYWVDAKHHVIERANLD----GSHRKAV--------------------------------I---SQGLPHP 291 (386)
T ss_dssp G------TEEEEEETTTTEEEEECTT----SCSCEEE--------------------------------E---CSSCSSE
T ss_pred C------CEEEEEECCCCEEEEEeCC----CCeeEEE--------------------------------E---ECCCCCc
Confidence 3 5566666677888888843 1111111 0 1112344
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2458 TRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
..+++ ..+.++++-...+.|..+|..+|+.+.++
T Consensus 292 ~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 292 FAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp EEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred eEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence 56777 34556666666788888886666655554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.29 E-value=5.5 Score=49.02 Aligned_cols=154 Identities=10% Similarity=-0.010 Sum_probs=90.4
Q ss_pred EEEEEEcCCCCEE-EEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEE-EEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFF-LVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~L-ASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~L-aSGS~DGtVrVWD 2299 (2548)
..+++|++.+..| .+-...+.|+.++.+.+.....+.. .......+++.+.+..| ++-...+.|.+.+
T Consensus 75 ~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~----------~~~~p~glavd~~~g~ly~~d~~~~~I~~~~ 144 (349)
T 3v64_C 75 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST----------GLESPGGLAVDWVHDKLYWTDSGTSRIEVAN 144 (349)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----------SCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC----------CCCCccEEEEecCCCeEEEEcCCCCeEEEEc
Confidence 4788998765544 4555678899999876553333211 11345788998755444 5555668899999
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCC-CeEEEEECCCCCCCcceee-eccCCCeEEEEEccC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG-INVVVWDTLAPPTSSRASI-TCHEGGARSISVFDN 2377 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~D-GtVrIWDl~t~~~k~v~sl-~gHs~~VtSLafsP~ 2377 (2548)
.+......... .-..+... .+++|.+..+..+. ..+ +.|...++.. .....+ ...-...+.|+++|.
T Consensus 145 ~dG~~~~~l~~-----~~l~~P~~-iavdp~~g~ly~td--~~~~~~I~r~~~dG---~~~~~~~~~~~~~PnGla~d~~ 213 (349)
T 3v64_C 145 LDGAHRKVLLW-----QSLEKPRA-IALHPMEGTIYWTD--WGNTPRIEASSMDG---SGRRIIADTHLFWPNGLTIDYA 213 (349)
T ss_dssp TTSCSCEEEEC-----TTCSCEEE-EEEETTTTEEEEEE--CSSSCEEEEEETTS---CSCEESCCSSCSCEEEEEEETT
T ss_pred CCCCceEEEEe-----CCCCCcce-EEEecCcCeEEEec--cCCCCEEEEEeCCC---CCcEEEEECCCCCcceEEEeCC
Confidence 87442111100 00011122 24777655555544 234 7788888763 222222 222345789999987
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeC
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDF 2402 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDL 2402 (2548)
+ +.+.++-...+.|..+|+
T Consensus 214 ~------~~lY~aD~~~~~I~~~~~ 232 (349)
T 3v64_C 214 G------RRMYWVDAKHHVIERANL 232 (349)
T ss_dssp T------TEEEEEETTTTEEEEEET
T ss_pred C------CEEEEEECCCCEEEEEeC
Confidence 4 556666667788888884
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=94.00 E-value=17 Score=45.52 Aligned_cols=232 Identities=12% Similarity=-0.009 Sum_probs=124.8
Q ss_pred CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe-CCCcEEEEEcCCCccccccc
Q 000054 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LDGTVCTWQLEVGGRSNVRP 2310 (2548)
Q Consensus 2232 ~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS-~DGtVrVWDl~tgk~i~i~p 2310 (2548)
.+|+.+. ...|+..++........+. ....+..|+|++.+..|+.++ .++.|..+++....... .
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~-----------~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~-~- 149 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIP-----------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-S- 149 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEEC-----------SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------C-C-
T ss_pred ceeEEec-cceeEEEccCCcceeEecc-----------ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCC-c-
Confidence 3444433 4678888887665443331 136789999998666665554 56788888886521000 0
Q ss_pred CccceeccCC--cccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEE
Q 000054 2311 MESCLCFSSH--AMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLI 2388 (2548)
Q Consensus 2311 ~~s~~t~~gH--~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lL 2388 (2548)
........ ...-.++.+.+..|+.+. +..+.|.+.|+.. ......+.........|++.|.. +.+.
T Consensus 150 --~~~~~~~~~~~p~glavD~~~~~lY~~d--~~~~~I~~~~~~g--~~~~~l~~~~~~~P~~iavdp~~------g~ly 217 (400)
T 3p5b_L 150 --YDTVISRDIQAPDGLAVDWIHSNIYWTD--SVLGTVSVADTKG--VKRKTLFRENGSKPRAIVVDPVH------GFMY 217 (400)
T ss_dssp --CEEEECSSCSCEEEEEEETTTTEEEEEE--TTTTEEEEECTTT--CSEEEEEECSSCCEEEEEEETTT------TEEE
T ss_pred --ceEEEeCCCCCcccEEEEecCCceEEEE--CCCCeEEEEeCCC--CceEEEEeCCCCCcceEEEeccc------CeEE
Confidence 00011111 111234666455555544 3678899888863 22222233334567899999873 4455
Q ss_pred EEEeC-CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCC
Q 000054 2389 VTGGK-GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTS 2467 (2548)
Q Consensus 2389 VSGS~-DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~ 2467 (2548)
++-.. .+.|...++. |.....+ . ...-.....|+++|++.
T Consensus 218 ~td~~~~~~I~~~~~d----G~~~~~~--------------------------------~---~~~l~~P~glavd~~~~ 258 (400)
T 3p5b_L 218 WTDWGTPAKIKKGGLN----GVDIYSL--------------------------------V---TENIQWPNGITLDLLSG 258 (400)
T ss_dssp EEECSSSCCEEEEETT----SCSCEEE--------------------------------E---CSSCSCEEEEEEETTTT
T ss_pred EEeCCCCCEEEEEeCC----CCccEEE--------------------------------E---ECCCCceEEEEEEeCCC
Confidence 55422 3677777732 2211111 0 11224567899998777
Q ss_pred EEEEEe-CCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2468 LFLTGS-KDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2468 ~LaSGS-~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
.|+.+. ..+.|...|+..... .++-.. ... .+| ...+++..+. +.+-...+.|..++..+|
T Consensus 259 ~lY~aD~~~~~I~~~d~dG~~~-~~~~~~--~~~------l~~-------P~gl~v~~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 259 RLYWVDSKLHSISSIDVNGGNR-KTILED--EKR------LAH-------PFSLAVFEDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp EEEEEETTTTEEEEEETTSCCC-EEEEEC--SST------TSS-------EEEEEEETTEEEEEESSSCSEEEEESSSC
T ss_pred EEEEEECCCCEEEEEeCCCCcc-EEEEeC--CCC------CCC-------CEEEEEeCCEEEEecCCCCeEEEEEcCCC
Confidence 666664 467899999864332 222100 000 011 2345665555 556667788888885554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=93.67 E-value=9.8 Score=45.97 Aligned_cols=208 Identities=11% Similarity=-0.012 Sum_probs=113.7
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCC---CceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEE-EEEeCCCcEE
Q 000054 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGK---DKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~t---g~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~L-aSGS~DGtVr 2296 (2548)
..+++|++.+. ++.+-..++.|..++... +.....+- .. .......+++++.+..| ++-..++.|.
T Consensus 32 p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~--~~-------~~~~p~glavd~~~~~ly~~d~~~~~I~ 102 (316)
T 1ijq_A 32 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI--SR-------DIQAPDGLAVDWIHSNIYWTDSVLGTVS 102 (316)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEE--CS-------SCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred eEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEE--eC-------CCCCcCEEEEeecCCeEEEEECCCCEEE
Confidence 47888988655 445556678999999875 12222221 10 11345788998755545 4546678999
Q ss_pred EEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee-ccCCCeEEEEEc
Q 000054 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT-CHEGGARSISVF 2375 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~-gHs~~VtSLafs 2375 (2548)
+.+.+......+.. .-...... .++.|.+..++.+... ..+.|...++.. .....+. ..-...+.+++.
T Consensus 103 ~~~~~g~~~~~~~~-----~~~~~P~~-iavdp~~g~ly~~d~~-~~~~I~~~~~dG---~~~~~~~~~~~~~P~gla~d 172 (316)
T 1ijq_A 103 VADTKGVKRKTLFR-----ENGSKPRA-IVVDPVHGFMYWTDWG-TPAKIKKGGLNG---VDIYSLVTENIQWPNGITLD 172 (316)
T ss_dssp EEETTSSSEEEEEE-----CTTCCEEE-EEEETTTTEEEEEECS-SSCEEEEEETTS---CCEEEEECSSCSCEEEEEEE
T ss_pred EEeCCCCceEEEEE-----CCCCCcce-EEeCCCCCEEEEEccC-CCCeEEEEcCCC---CCeEEEEECCCCCceEEEEe
Confidence 99987432111100 00011122 2467755555544311 126788888753 3333222 223567899999
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCC
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG 2455 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~ 2455 (2548)
+++ +.+.++-+..+.|..+|+. |...+.+. .. .....
T Consensus 173 ~~~------~~lY~~D~~~~~I~~~d~d----g~~~~~~~--------------------------------~~-~~~~~ 209 (316)
T 1ijq_A 173 LLS------GRLYWVDSKLHSISSIDVN----GGNRKTIL--------------------------------ED-EKRLA 209 (316)
T ss_dssp TTT------TEEEEEETTTTEEEEEETT----SCSCEEEE--------------------------------EC-TTTTS
T ss_pred ccC------CEEEEEECCCCeEEEEecC----CCceEEEe--------------------------------ec-CCccC
Confidence 874 5566666677889999843 22222210 00 01122
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2456 SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2456 ~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
....+++. .+.++++-...+.|..+|..+|+.+..+
T Consensus 210 ~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 210 HPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred CcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence 34567775 3555666666778888888777655544
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=93.46 E-value=12 Score=47.69 Aligned_cols=260 Identities=11% Similarity=0.045 Sum_probs=132.1
Q ss_pred EEEEEcCC--CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC----c-E
Q 000054 2223 RAFSSHPL--RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG----T-V 2295 (2548)
Q Consensus 2223 ~~VsfSPd--G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG----t-V 2295 (2548)
..++++|+ +..|..+...+.|+.+|..++....... .......++|+++|+ |+.+...+ . +
T Consensus 142 ~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-----------~~~~P~giavd~dG~-lyVad~~~~~~~~gv 209 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-----------NIGQCADVNFTLNGD-MVVVDDQSSDTNTGI 209 (433)
T ss_dssp CEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-----------CCSCEEEEEECTTCC-EEEEECCSCTTSEEE
T ss_pred ceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-----------CCCCccEEEECCCCC-EEEEcCCCCcccceE
Confidence 56788884 3334444333889999988776544331 125689999999999 55554322 1 2
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEEEEcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceee-e-ccCCCeEEE
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-T-CHEGGARSI 2372 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-~-gHs~~VtSL 2372 (2548)
...+...+. ... .... ...+...+ ++++ +|.++++- ..++.|+.+|... +.....+ . +....-..+
T Consensus 210 ~~~~~~~~~-~~~---~~~~-~~~~P~gi-avd~~~G~lyv~d---~~~~~V~~~d~~~--g~~~~~~~~~~~~~~~~~i 278 (433)
T 4hw6_A 210 YLFTRASGF-TER---LSLC-NARGAKTC-AVHPQNGKIYYTR---YHHAMISSYDPAT--GTLTEEEVMMDTKGSNFHI 278 (433)
T ss_dssp EEECGGGTT-CCE---EEEE-ECSSBCCC-EECTTTCCEEECB---TTCSEEEEECTTT--CCEEEEEEECSCCSSCEEE
T ss_pred EEEECCCCe-ecc---cccc-ccCCCCEE-EEeCCCCeEEEEE---CCCCEEEEEECCC--CeEEEEEeccCCCCCcccE
Confidence 222222111 000 0000 11122223 4677 66666553 2678899998864 2221122 1 112233569
Q ss_pred EEccCCCCCCCCCC-EEEEEeCCCcEEEEeCCccccCcee--eeecCCCCCCCccccccccCCCCCCccCCCCCceEEEc
Q 000054 2373 SVFDNDLGSGSVSP-LIVTGGKGGDVGIHDFRYIATGKTK--KHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYI 2449 (2548)
Q Consensus 2373 afsP~dlg~gs~g~-lLVSGS~DGtVrLWDLR~l~TGk~l--~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi 2449 (2548)
+++|+ ++ +.++-...+.|+.+|.. ..++... ..+... +...|. .++. .
T Consensus 279 a~dpd-------G~~LYvad~~~~~I~~~~~d-~~~~~~~~~~~~ag~------------~g~~g~----~dg~-----~ 329 (433)
T 4hw6_A 279 VWHPT-------GDWAYIIYNGKHCIYRVDYN-RETGKLAVPYIVCGQ------------HSSPGW----VDGM-----G 329 (433)
T ss_dssp EECTT-------SSEEEEEETTTTEEEEEEBC-TTTCCBCCCEEEEEC------------TTCCCC----BCEE-----G
T ss_pred EEeCC-------CCEEEEEeCCCCEEEEEeCC-CCCcccCcEEEEEec------------CCCCcc----CCCc-----c
Confidence 99998 55 56666677889998843 1122110 111000 000000 0000 0
Q ss_pred ccCCCCCEEEEEE---------eCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCc------ee
Q 000054 2450 PKAHLGSVTRIST---------VPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGV------VR 2514 (2548)
Q Consensus 2450 ~~gH~~~VtsLaf---------SPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~------V~ 2514 (2548)
..+.-..-..+++ +++|.+.++-...+.|+.++. +|.. .++-+..... ..|..+- -.
T Consensus 330 ~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v-~t~~G~g~~~------~~G~~dG~~~~~~~~ 401 (433)
T 4hw6_A 330 TGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRV-TTYAGRGNSR------EWGYVDGELRSQALF 401 (433)
T ss_dssp GGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEE-EEEECCCTTC------SSCCBCEETTTTCBC
T ss_pred cceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCE-EEEEeCCCCC------ccccCCCccccccEe
Confidence 0112234668888 777777777777789999985 5644 3331110000 0111000 01
Q ss_pred ecEEEEEEc-CCe--EEEEECCCcEEEEECC
Q 000054 2515 AGVTDIQVV-SRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2515 a~VtsLafS-PdG--LaSGS~DGtIrIWDL~ 2542 (2548)
.....|+++ ++| +++-...+.|+..+++
T Consensus 402 ~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 402 NHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp SSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 224678999 666 4455566788887764
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=93.08 E-value=13 Score=46.74 Aligned_cols=207 Identities=10% Similarity=-0.011 Sum_probs=112.8
Q ss_pred EEEEEEcCCCCEE-EEEECCCeEEEEEcCCCc----eeEEEeccCCCCCCCCCCCCCeEEEEEccCC-CEEEEEeCCCcE
Q 000054 2222 TRAFSSHPLRPFF-LVGSSNTHIYLWEFGKDK----ATATYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTV 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~~L-ASGS~DGsVrLWDl~tg~----~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG-~~LaSGS~DGtV 2295 (2548)
+.+++|++.+..| .+-...+.|+.++++... ....+.. .......+++.+.+ +.+++-...+.|
T Consensus 114 ~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~----------~~~~p~glavD~~~~~lY~~d~~~~~I 183 (400)
T 3p5b_L 114 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR----------DIQAPDGLAVDWIHSNIYWTDSVLGTV 183 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS----------SCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred ceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC----------CCCCcccEEEEecCCceEEEECCCCeE
Confidence 5889999865544 455567888888876521 2222210 12567899999854 444455567889
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee-eccCCCeEEEEE
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEGGARSISV 2374 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-~gHs~~VtSLaf 2374 (2548)
.+.+++........ ........-.++.|.+..++.+... ..+.|...++.. .....+ ...-...+.|++
T Consensus 184 ~~~~~~g~~~~~l~------~~~~~~P~~iavdp~~g~ly~td~~-~~~~I~~~~~dG---~~~~~~~~~~l~~P~glav 253 (400)
T 3p5b_L 184 SVADTKGVKRKTLF------RENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG---VDIYSLVTENIQWPNGITL 253 (400)
T ss_dssp EEECTTTCSEEEEE------ECSSCCEEEEEEETTTTEEEEEECS-SSCCEEEEETTS---CSCEEEECSSCSCEEEEEE
T ss_pred EEEeCCCCceEEEE------eCCCCCcceEEEecccCeEEEEeCC-CCCEEEEEeCCC---CccEEEEECCCCceEEEEE
Confidence 88888754321110 0001111112467755555544311 246788888763 232222 223356789999
Q ss_pred ccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCC
Q 000054 2375 FDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHL 2454 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~ 2454 (2548)
.+.+ +.+.++-...+.|..+|+. |...+.+. . ..+..
T Consensus 254 d~~~------~~lY~aD~~~~~I~~~d~d----G~~~~~~~--------------------------------~-~~~~l 290 (400)
T 3p5b_L 254 DLLS------GRLYWVDSKLHSISSIDVN----GGNRKTIL--------------------------------E-DEKRL 290 (400)
T ss_dssp ETTT------TEEEEEETTTTEEEEEETT----SCCCEEEE--------------------------------E-CSSTT
T ss_pred EeCC------CEEEEEECCCCEEEEEeCC----CCccEEEE--------------------------------e-CCCCC
Confidence 9874 4555665667788888843 22222210 0 01122
Q ss_pred CCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2455 GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2455 ~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
....++++. .+.++++-...+.|..+|..+|+.+.++
T Consensus 291 ~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 291 AHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp SSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred CCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence 234466663 3445556566778888887777655544
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=92.99 E-value=23 Score=46.11 Aligned_cols=279 Identities=10% Similarity=0.052 Sum_probs=139.9
Q ss_pred EEEEEcCC--CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEE-------ccCCCEEEEEeCCC
Q 000054 2223 RAFSSHPL--RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQF-------DHYGHRFASAALDG 2293 (2548)
Q Consensus 2223 ~~VsfSPd--G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaF-------SPdG~~LaSGS~DG 2293 (2548)
..++|+|. ++++++-...+.|++.|..++........ . .........|+| +++|+.|+++...+
T Consensus 142 ~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~-~------~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~ 214 (496)
T 3kya_A 142 GRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNI-N------TIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYD 214 (496)
T ss_dssp EEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECC-T------TSSCSBEEEEEECCCBTTTBCTTCEEEEEECCC
T ss_pred CEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEcc-C------ccccCCCcEEEEeecccccCCCCCEEEEEeCCC
Confidence 67788883 44555555556788888887765544422 1 012356899999 99999777776554
Q ss_pred -c------EEEEEcCCCcccccccC-ccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECC-------CCCC-C
Q 000054 2294 -T------VCTWQLEVGGRSNVRPM-ESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTL-------APPT-S 2357 (2548)
Q Consensus 2294 -t------VrVWDl~tgk~i~i~p~-~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~-------t~~~-k 2357 (2548)
. |.+.+..........+. .....+ .|...+ +++|++..|..+. ..++.|..+|+. ++.. .
T Consensus 215 ~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~gi-avdp~~g~LYvtd--~~~g~V~r~d~~~~~~~~~tg~~~t 290 (496)
T 3kya_A 215 GKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGA-TIHPINGELYFNS--YEKGQVFRLDLVDYFKTIKNGGSWD 290 (496)
T ss_dssp TTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCE-EECTTTCCEEEEE--TTTTEEEEECHHHHHHHHHTTCCCC
T ss_pred CCcccCceEEEEecCCCCceeecccceeeccC-CCceEE-EEcCCCCeEEEEE--CCCCEEEEEecccccccccCceeec
Confidence 2 55555443111110000 011112 233333 4678544444433 367889999986 3211 0
Q ss_pred c--------cee-ee-ccCCCeEEEEEccCCCCCCCCCC-EEEEEeCCCcEEEEeCCccccCce--eeeecCCCCCCCcc
Q 000054 2358 S--------RAS-IT-CHEGGARSISVFDNDLGSGSVSP-LIVTGGKGGDVGIHDFRYIATGKT--KKHKHSDRGGSSIN 2424 (2548)
Q Consensus 2358 ~--------v~s-l~-gHs~~VtSLafsP~dlg~gs~g~-lLVSGS~DGtVrLWDLR~l~TGk~--l~tl~~~~~~s~~~ 2424 (2548)
+ ... +. +.......++|+|+ ++ +.++-.....|+.+|.. ..++.. ...+-...
T Consensus 291 p~~~~~~g~~~~l~~~~~~~~p~~ia~~p~-------G~~lYvaD~~~h~I~kid~d-g~~~~~~~~~~~aG~~------ 356 (496)
T 3kya_A 291 PIVKNNPNTFKQLFTIADPSWEFQIFIHPT-------GKYAYFGVINNHYFMRSDYD-EIKKEFITPYNFVGGY------ 356 (496)
T ss_dssp CBGGGCTTTEEEEEECSSSSCCEEEEECTT-------SSEEEEEETTTTEEEEEEEE-TTTTEECCCEEEEEBT------
T ss_pred ccccccccccceeEecCCCCCceEEEEcCC-------CCEEEEEeCCCCEEEEEecC-CCcceecccEEecCCC------
Confidence 0 111 11 22345688999998 66 45555677888887632 112211 01110000
Q ss_pred ccccccCCCCCCccCCCCCceEEEcccCCCCCEE-EEEEe-------CCCCEEEEEeCCCcEEEEECCCCcEEEEecccc
Q 000054 2425 TCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVT-RISTV-------PNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLH 2496 (2548)
Q Consensus 2425 ~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vt-sLafS-------PdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~H 2496 (2548)
...| ..|+.. ..+.-..-. .++.+ ++|.++++=.....|+.++ .+|. +.++-+..
T Consensus 357 ------g~~G----~~DG~~-----~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g 419 (496)
T 3kya_A 357 ------KQSG----YRDDVG-----TEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRG 419 (496)
T ss_dssp ------TBCC----CBCCBG-----GGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESC
T ss_pred ------CCCc----ccCCcc-----cccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEeccc
Confidence 0000 001100 011122233 45554 4566777666778899998 4564 44442211
Q ss_pred cccccccCcc-cCCCCc------eeecEEEEEEcCC-e--EEEEECCCcEEEEECCCC
Q 000054 2497 ERHTFLQPSS-RGFGGV------VRAGVTDIQVVSR-G--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2497 s~hsfl~~tl-~GH~~~------V~a~VtsLafSPd-G--LaSGS~DGtIrIWDL~sg 2544 (2548)
..... .+.. .|..+- -......|+++++ | +++=.....||.++++..
T Consensus 420 ~~~~~-~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 420 ASTSL-ADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp TTHHH-HHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred ccccc-cCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence 00000 0000 011110 0122467899996 6 445566788999998765
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.89 E-value=31 Score=47.44 Aligned_cols=183 Identities=15% Similarity=0.030 Sum_probs=101.9
Q ss_pred CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEE-EEeCCCcEEEEEcCCCcccccccCccceecc
Q 000054 2240 NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALDGTVCTWQLEVGGRSNVRPMESCLCFS 2318 (2548)
Q Consensus 2240 DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~La-SGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~ 2318 (2548)
...|+..++........+. ....+..|+|++.+..|+ +-...+.|..+++........ ....+.
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~-----------~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~----~~~vi~ 467 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIP-----------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS----YDTVIS 467 (791)
T ss_dssp BSSEEEECTTSCCCEEEEC-----------SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC------------CEEEEC
T ss_pred ccceeEeeccCCcceeeec-----------CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc----eeEEEe
Confidence 3557777777654433321 125688999998655555 445567888888874311000 000111
Q ss_pred --CCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee-eccCCCeEEEEEccCCCCCCCCCCEEEEEeCC-
Q 000054 2319 --SHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEGGARSISVFDNDLGSGSVSPLIVTGGKG- 2394 (2548)
Q Consensus 2319 --gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~D- 2394 (2548)
.....-.++.+.+..|+.+. +..+.|.+.++.. .....+ .........|++.|.. +.+.++-..+
T Consensus 468 ~~l~~P~GLAvD~~~~~LY~tD--~~~~~I~v~~ldG---~~~~~l~~~~l~~P~gIaVDp~~------g~LYwtD~g~~ 536 (791)
T 3m0c_C 468 RDIQAPDGLAVDWIHSNIYWTD--SVLGTVSVADTKG---VKRKTLFRENGSKPRAIVVDPVH------GFMYWTDWGTP 536 (791)
T ss_dssp SSCSCCCEEEEETTTTEEEEEE--TTTTEEEEEETTS---SSEEEEEECTTCCEEEEEEETTT------TEEEEEECSSS
T ss_pred cCCCCcceeeeeecCCcEEEEe--cCCCeEEEEeCCC---CeEEEEEeCCCCCcceEEEecCC------CCEEEecCCCC
Confidence 11112235777776666655 4678999999863 333333 2334568899999873 4455554333
Q ss_pred CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEe-
Q 000054 2395 GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGS- 2473 (2548)
Q Consensus 2395 GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS- 2473 (2548)
+.|...++. |.....+ ....-.....|++++.+..|+.+.
T Consensus 537 ~~I~~~~~d----G~~~~~l-----------------------------------v~~~l~~P~GLavD~~~~~LYwaD~ 577 (791)
T 3m0c_C 537 AKIKKGGLN----GVDIYSL-----------------------------------VTENIQWPNGITLDLLSGRLYWVDS 577 (791)
T ss_dssp CEEEEEETT----SCCEEEE-----------------------------------ECSSCSCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEecC----CCceEEE-----------------------------------EeCCCCCceEEEEecCCCeEEEEeC
Confidence 677777742 2222222 011234677899998766666553
Q ss_pred CCCcEEEEECCCCc
Q 000054 2474 KDGDVKLWDAKAAQ 2487 (2548)
Q Consensus 2474 ~DGtIrIWDl~Tge 2487 (2548)
..+.|...|+....
T Consensus 578 ~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 578 KLHSISSIDVNGGN 591 (791)
T ss_dssp TTTEEEEEETTSCS
T ss_pred CCCcEEEEecCCCc
Confidence 45678888886433
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=92.24 E-value=14 Score=45.08 Aligned_cols=205 Identities=12% Similarity=0.012 Sum_probs=113.6
Q ss_pred EEEEEEcCC-CCEEEEEECCCeEEEEEcCCCceeE-EEeccCCCCCCCCCCCCCeEEEEEccCC-CEEEEEeCCCcEEEE
Q 000054 2222 TRAFSSHPL-RPFFLVGSSNTHIYLWEFGKDKATA-TYGVLPAANVPPPYALASISALQFDHYG-HRFASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPd-G~~LASGS~DGsVrLWDl~tg~~l~-t~~~l~ghs~~~~~H~~~VtsVaFSPdG-~~LaSGS~DGtVrVW 2298 (2548)
..+++|++. +.++.+-...+.|..++.+.+.... .+.. .......+++.+.+ +.+++-...+.|.++
T Consensus 37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~----------~l~~p~glavd~~~g~ly~~d~~~~~I~~~ 106 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS----------GLLSPDGLACDWLGEKLYWTDSETNRIEVS 106 (318)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE----------CCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC----------CCCCccEEEEEcCCCeEEEEECCCCEEEEE
Confidence 578899985 4455566677889999987653211 1111 11346688998754 444555567899999
Q ss_pred EcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee-eccCCCeEEEEEccC
Q 000054 2299 QLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEGGARSISVFDN 2377 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-~gHs~~VtSLafsP~ 2377 (2548)
+.+......... . -...... .++.|.+..++.+... ..+.|...++.. .....+ ...-...+.++++++
T Consensus 107 ~~dG~~~~~l~~----~-~~~~P~g-iavdp~~g~ly~td~~-~~~~I~r~~~dG---~~~~~~~~~~l~~Pnglavd~~ 176 (318)
T 3sov_A 107 NLDGSLRKVLFW----Q-ELDQPRA-IALDPSSGFMYWTDWG-EVPKIERAGMDG---SSRFIIINSEIYWPNGLTLDYE 176 (318)
T ss_dssp ETTSCSCEEEEC----S-SCSSEEE-EEEEGGGTEEEEEECS-SSCEEEEEETTS---CSCEEEECSSCSCEEEEEEETT
T ss_pred ECCCCcEEEEEe----C-CCCCccE-EEEeCCCCEEEEEecC-CCCEEEEEEcCC---CCeEEEEECCCCCccEEEEecc
Confidence 987432111100 0 0011112 2466654554444311 356788888753 222222 222345688999987
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCE
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSV 2457 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~V 2457 (2548)
+ +.+.++-+..+.|..+|+. |...+.+. .+.....
T Consensus 177 ~------~~lY~aD~~~~~I~~~d~d----G~~~~~~~-----------------------------------~~~~~~P 211 (318)
T 3sov_A 177 E------QKLYWADAKLNFIHKSNLD----GTNRQAVV-----------------------------------KGSLPHP 211 (318)
T ss_dssp T------TEEEEEETTTTEEEEEETT----SCSCEEEE-----------------------------------CSCCSCE
T ss_pred C------CEEEEEECCCCEEEEEcCC----CCceEEEe-----------------------------------cCCCCCc
Confidence 3 5566666677888888843 22222220 1112334
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2458 TRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
..+++. .+.++.+-...+.|..+|..+|+....+
T Consensus 212 ~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 212 FALTLF-EDILYWTDWSTHSILACNKYTGEGLREI 245 (318)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred eEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEE
Confidence 566665 3345555556778888888777654444
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=92.10 E-value=22 Score=43.03 Aligned_cols=233 Identities=11% Similarity=0.056 Sum_probs=114.7
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.++.+++ +..+++ +.+|.|.. ..+.|+.-....... .+.+.+..+.+.+++..++.+ .+|.| |...
T Consensus 82 ~~~i~~~~-~~~~~~-g~~g~i~~-S~DgG~tW~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~-~~g~v--~~S~ 148 (327)
T 2xbg_A 82 FNSVSFQG-NEGWIV-GEPPIMLH-TTDGGQSWSQIPLDP-------KLPGSPRLIKALGNGSAEMIT-NVGAI--YRTK 148 (327)
T ss_dssp EEEEEEET-TEEEEE-EETTEEEE-ESSTTSSCEECCCCT-------TCSSCEEEEEEEETTEEEEEE-TTCCE--EEES
T ss_pred EEEEEecC-CeEEEE-ECCCeEEE-ECCCCCCceECcccc-------CCCCCeEEEEEECCCCEEEEe-CCccE--EEEc
Confidence 46677776 444444 45564433 333454444332110 122457888887777666555 45644 3222
Q ss_pred -CCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEE-EEECCCCCCCcceeeeccCCCeEEEEEccC
Q 000054 2302 -VGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVV-VWDTLAPPTSSRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2302 -tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVr-IWDl~t~~~k~v~sl~gHs~~VtSLafsP~ 2377 (2548)
.|+.-... ..+....+. .+.+++.+++++ .++.+. -+|-.....+.+ -......+..+.+.++
T Consensus 149 DgG~tW~~~-------~~~~~~~~~~~~~~~~~~~~~~g----~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~ 215 (327)
T 2xbg_A 149 DSGKNWQAL-------VQEAIGVMRNLNRSPSGEYVAVS----SRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPD 215 (327)
T ss_dssp STTSSEEEE-------ECSCCCCEEEEEECTTSCEEEEE----TTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTT
T ss_pred CCCCCCEEe-------ecCCCcceEEEEEcCCCcEEEEE----CCCcEEEEeCCCCCceeEC--CCCCCCccceeEECCC
Confidence 22211000 112222333 367788888775 344443 344311111122 1234567888888776
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCE
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSV 2457 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~V 2457 (2548)
+.+ +.++.+|.+++.+ ...|+.-...... ...+...+
T Consensus 216 -------g~~-~~~~~~G~~~~s~---~D~G~tW~~~~~~--------------------------------~~~~~~~~ 252 (327)
T 2xbg_A 216 -------GRL-WMIVNGGKIAFSD---PDNSENWGELLSP--------------------------------LRRNSVGF 252 (327)
T ss_dssp -------SCE-EEEETTTEEEEEE---TTEEEEECCCBCT--------------------------------TSSCCSCE
T ss_pred -------CCE-EEEeCCceEEEec---CCCCCeeEeccCC--------------------------------cccCCcce
Confidence 444 4556678877763 1112221111000 00122357
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcE
Q 000054 2458 TRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSV 2536 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtI 2536 (2548)
.++++.+++.+++++. +|.| .+....|+.-..+.. ..++. ..+.++.|.+++ ++.++.+|+|
T Consensus 253 ~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~-----------~~~~~----~~~~~v~~~~~~~~~~~G~~G~i 315 (327)
T 2xbg_A 253 LDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVD-----------VKKVP----SNFYKILFFSPDQGFILGQKGIL 315 (327)
T ss_dssp EEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGG-----------GTTSS----SCCCEEEEEETTEEEEECSTTEE
T ss_pred EEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCc-----------cCCCC----CCeEEEEEECCCceEEEcCCceE
Confidence 8899998888777664 6766 344444543322210 00111 123455676555 8888899987
Q ss_pred EEEE
Q 000054 2537 KLIQ 2540 (2548)
Q Consensus 2537 rIWD 2540 (2548)
.-++
T Consensus 316 ~~~~ 319 (327)
T 2xbg_A 316 LRYV 319 (327)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6665
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=92.09 E-value=11 Score=46.48 Aligned_cols=109 Identities=10% Similarity=0.041 Sum_probs=59.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC---CCEEEEEeC----C--
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY---GHRFASAAL----D-- 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd---G~~LaSGS~----D-- 2292 (2548)
...++|.|+|+++++ ..+|.|++++ .+++ ..+...+. ..........|+|+|+ +..|+.+.. +
T Consensus 31 P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~--~~~~~~~v----~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~ 102 (354)
T 3a9g_A 31 PWSIAPLGGGRYLVT-ERPGRLVLIS-PSGK--KLVASFDV----ANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGH 102 (354)
T ss_dssp EEEEEEEETTEEEEE-ETTTEEEEEC-SSCE--EEEEECCC----CCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGC
T ss_pred CeEEEEcCCCeEEEE-eCCCEEEEEe-CCCc--eEeeccce----eecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCC
Confidence 478889999985554 5669999887 4454 33322110 0011256899999997 555555433 3
Q ss_pred --CcEEEEEcCCCc-ccc-cccC-ccceeccCCcccEEEEcCCCCEEEEEe
Q 000054 2293 --GTVCTWQLEVGG-RSN-VRPM-ESCLCFSSHAMDVSYITSSGSVIAAAG 2338 (2548)
Q Consensus 2293 --GtVrVWDl~tgk-~i~-i~p~-~s~~t~~gH~~~V~afSpdGslLATgG 2338 (2548)
+.|..|+...+. ... .... ........|...-..|.|||.++++.|
T Consensus 103 ~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 103 IRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred cceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 567777765431 000 0000 000011234433356899999888765
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.04 E-value=12 Score=45.98 Aligned_cols=109 Identities=12% Similarity=0.048 Sum_probs=60.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC---CCEEEEEeC-C-----
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY---GHRFASAAL-D----- 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd---G~~LaSGS~-D----- 2292 (2548)
...++|.|+|+++++ ..+|.|++++ +++. ..+...+. ..........|+|+|+ +..|+.+.. +
T Consensus 33 P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~-~~~~~~~v----~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~ 104 (352)
T 2ism_A 33 PWALAFLPDGGMLIA-ERPGRIRLFR--EGRL-STYAELSV----YHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLR 104 (352)
T ss_dssp EEEEEECTTSCEEEE-ETTTEEEEEE--TTEE-EEEEECCC----CCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSE
T ss_pred ceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc-cEeecceE----eecCCCCceeEEECCCCCCCCEEEEEEecCCCCCc
Confidence 478999999996555 5669999998 4432 22221110 0111356899999998 555555443 2
Q ss_pred CcEEEEEcCCCcccccccCcc-ce--eccCCcccEEEEcCCCCEEEEEe
Q 000054 2293 GTVCTWQLEVGGRSNVRPMES-CL--CFSSHAMDVSYITSSGSVIAAAG 2338 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s-~~--t~~gH~~~V~afSpdGslLATgG 2338 (2548)
+.|..++...+.......... .. .-..|...-..+.|+|.+.++.|
T Consensus 105 ~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 105 NQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred cEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 567777776431100000000 00 01124333346899998877754
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=91.65 E-value=30 Score=42.07 Aligned_cols=222 Identities=10% Similarity=-0.042 Sum_probs=120.9
Q ss_pred CCeEEEEEcCCCc--eeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEE-EEeCCCcEEEEEcCCCcccccccCcccee
Q 000054 2240 NTHIYLWEFGKDK--ATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALDGTVCTWQLEVGGRSNVRPMESCLC 2316 (2548)
Q Consensus 2240 DGsVrLWDl~tg~--~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~La-SGS~DGtVrVWDl~tgk~i~i~p~~s~~t 2316 (2548)
...|+..+++... ....+.. ...+.+++|++.+..|+ +-..++.|..++.+.+..... ...
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~-----------~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~-----~~~ 75 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGG-----------LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN-----VVV 75 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEE-----------EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-----EEE
T ss_pred cCeEEEEECCCCceEEEEEecC-----------CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-----EEc
Confidence 4678889988653 1111111 13577899998655554 445567898898875521110 000
Q ss_pred ccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee-eccCCCeEEEEEccCCCCCCCCCCEEEEEe-CC
Q 000054 2317 FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEGGARSISVFDNDLGSGSVSPLIVTGG-KG 2394 (2548)
Q Consensus 2317 ~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-~gHs~~VtSLafsP~dlg~gs~g~lLVSGS-~D 2394 (2548)
..-....-.++.+.+..|+.+. +..+.|.++++.. .....+ .........+++.|.. +.+.++-. ..
T Consensus 76 ~~l~~p~glavd~~~g~ly~~d--~~~~~I~~~~~dG---~~~~~l~~~~~~~P~giavdp~~------g~ly~td~~~~ 144 (318)
T 3sov_A 76 SGLLSPDGLACDWLGEKLYWTD--SETNRIEVSNLDG---SLRKVLFWQELDQPRAIALDPSS------GFMYWTDWGEV 144 (318)
T ss_dssp ECCSCCCEEEEETTTTEEEEEE--TTTTEEEEEETTS---CSCEEEECSSCSSEEEEEEEGGG------TEEEEEECSSS
T ss_pred CCCCCccEEEEEcCCCeEEEEE--CCCCEEEEEECCC---CcEEEEEeCCCCCccEEEEeCCC------CEEEEEecCCC
Confidence 0001111234666555444443 3678899999864 222222 2334567889998863 44455442 35
Q ss_pred CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEE-e
Q 000054 2395 GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTG-S 2473 (2548)
Q Consensus 2395 GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSG-S 2473 (2548)
+.|...++. |.....+ . ...-..-..++++|++..|+.+ +
T Consensus 145 ~~I~r~~~d----G~~~~~~--------------------------------~---~~~l~~Pnglavd~~~~~lY~aD~ 185 (318)
T 3sov_A 145 PKIERAGMD----GSSRFII--------------------------------I---NSEIYWPNGLTLDYEEQKLYWADA 185 (318)
T ss_dssp CEEEEEETT----SCSCEEE--------------------------------E---CSSCSCEEEEEEETTTTEEEEEET
T ss_pred CEEEEEEcC----CCCeEEE--------------------------------E---ECCCCCccEEEEeccCCEEEEEEC
Confidence 677777732 2211111 0 1112345789999976665555 4
Q ss_pred CCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCCc
Q 000054 2474 KDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2474 ~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg~ 2545 (2548)
..+.|..+|+..... .++- .+.. .....+++..++ +.+-...+.|..++..++.
T Consensus 186 ~~~~I~~~d~dG~~~-~~~~-------------~~~~----~~P~glav~~~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 186 KLNFIHKSNLDGTNR-QAVV-------------KGSL----PHPFALTLFEDILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp TTTEEEEEETTSCSC-EEEE-------------CSCC----SCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCEEEEEcCCCCce-EEEe-------------cCCC----CCceEEEEeCCEEEEEecCCCeEEEEECCCCC
Confidence 567899999864322 2220 1000 112345666666 5566677888888876553
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=91.05 E-value=28 Score=43.40 Aligned_cols=203 Identities=8% Similarity=0.131 Sum_probs=116.8
Q ss_pred CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC----CCE----EEEEeC--CCcEEEEE
Q 000054 2230 LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY----GHR----FASAAL--DGTVCTWQ 2299 (2548)
Q Consensus 2230 dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd----G~~----LaSGS~--DGtVrVWD 2299 (2548)
...+++...+.+-+.+||+ +|+.+..+.. +.+..+..-|+ |+. +++.-. +++|++|+
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~------------g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~ 105 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT------------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYA 105 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC------------SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC------------CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEE
Confidence 4456777788889999999 8888877632 45666666652 322 233333 57999998
Q ss_pred cC--CCcccccccCc--cceeccCCcccEEEE-cCC-CC-EEEEEeccCCCCeEEEEECCCC-C----CCcceeeeccCC
Q 000054 2300 LE--VGGRSNVRPME--SCLCFSSHAMDVSYI-TSS-GS-VIAAAGHSSNGINVVVWDTLAP-P----TSSRASITCHEG 2367 (2548)
Q Consensus 2300 l~--tgk~i~i~p~~--s~~t~~gH~~~V~af-Spd-Gs-lLATgG~SS~DGtVrIWDl~t~-~----~k~v~sl~gHs~ 2367 (2548)
+. ++. +...... ...+-......++.+ ++. +. ++++.+ .+|.+..|++... . .+.++.+.. .+
T Consensus 106 iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~---k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gs 180 (355)
T 3amr_A 106 IDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG---KEGEFEQYELKADKNGYISGKKVRAFKM-NS 180 (355)
T ss_dssp ECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC---SSSEEEEEEEEECTTSCEEEEEEEEEEC-SS
T ss_pred ECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC---CCCeEEEEEEEeCCCCcccceEEEEecC-CC
Confidence 74 332 1111000 000000222334432 563 54 344443 7899999988531 1 234555553 35
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCcccc---CceeeeecCCCCCCCccccccccCCCCCCccCCCCCc
Q 000054 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIAT---GKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNG 2444 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~T---Gk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv 2444 (2548)
.+-.+.+.+. ...|..+-.|..|..+|.+- .. ++.+...
T Consensus 181 q~EgcvvDd~-------~g~Lyv~eEd~GIw~~da~p-~~~~~~~~v~~~------------------------------ 222 (355)
T 3amr_A 181 QTEGMAADDE-------YGRLYIAEEDEAIWKFSAEP-DGGSNGTVIDRA------------------------------ 222 (355)
T ss_dssp CEEEEEEETT-------TTEEEEEETTTEEEEEECST-TSCSCCEEEEEB------------------------------
T ss_pred CcceEEEcCC-------CCeEEEecccceEEEEeCCc-CCCCCceEEEEe------------------------------
Confidence 6777777776 45888888886665555331 11 1111111
Q ss_pred eEEEcccCC-CCCEEEEEEe--CCCC-EEEEEe-CCCcEEEEECC-CCcEEEEec
Q 000054 2445 MLWYIPKAH-LGSVTRISTV--PNTS-LFLTGS-KDGDVKLWDAK-AAQLVYHWS 2493 (2548)
Q Consensus 2445 ~Iwdi~~gH-~~~VtsLafS--PdG~-~LaSGS-~DGtIrIWDl~-Tgell~tL~ 2493 (2548)
-.++ ...+..|++. ++++ +|++.+ .+.+..|||.+ +.+.+..|.
T Consensus 223 -----~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 223 -----DGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp -----SSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred -----cCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 0122 2367788874 4555 666666 57799999997 788888773
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=91.04 E-value=36 Score=41.95 Aligned_cols=113 Identities=14% Similarity=0.079 Sum_probs=58.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC---CCEEEEEe-C------
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY---GHRFASAA-L------ 2291 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd---G~~LaSGS-~------ 2291 (2548)
...++|.|+|+.+.++...|.|++++.+ +.....+...+. ......+....|+|+|+ +..|+.+. .
T Consensus 20 P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~---v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 20 PWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPD---VWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp EEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCC---CCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred cEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcc---cccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 4789999999934445567999999853 332212211110 00111356789999996 44454442 2
Q ss_pred -CCcEEEEEcCCCc-ccc-ccc---CccceeccCCcccEEEEcCCCCEEEEEe
Q 000054 2292 -DGTVCTWQLEVGG-RSN-VRP---MESCLCFSSHAMDVSYITSSGSVIAAAG 2338 (2548)
Q Consensus 2292 -DGtVrVWDl~tgk-~i~-i~p---~~s~~t~~gH~~~V~afSpdGslLATgG 2338 (2548)
...|..++...+. ... ... .........|...-..|.|||.+.++.|
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 148 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG 148 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence 2256666664331 000 000 0000001234333356899998877765
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=89.40 E-value=44 Score=40.39 Aligned_cols=240 Identities=11% Similarity=0.055 Sum_probs=115.2
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+.++.|.+.+..+++ +.+|.| +...+.|+.-..... . .......+.+|.|++ +. ++.++.+|.|.. ..+
T Consensus 38 ~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~-~-----~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~D 106 (327)
T 2xbg_A 38 ILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTL-V-----LDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTD 106 (327)
T ss_dssp EEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCC-C-----CSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESS
T ss_pred EEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCC-C-----CCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECC
Confidence 588888877877775 456755 333344543333211 0 001124688999976 44 444556664433 222
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
.|+.=... .....+.+....|. +.+++..++++ .++.|. -.......-......+...+..+.+.++
T Consensus 107 gG~tW~~~--~~~~~~~~~~~~i~-~~~~~~~~~~~----~~g~v~--~S~DgG~tW~~~~~~~~~~~~~~~~~~~---- 173 (327)
T 2xbg_A 107 GGQSWSQI--PLDPKLPGSPRLIK-ALGNGSAEMIT----NVGAIY--RTKDSGKNWQALVQEAIGVMRNLNRSPS---- 173 (327)
T ss_dssp TTSSCEEC--CCCTTCSSCEEEEE-EEETTEEEEEE----TTCCEE--EESSTTSSEEEEECSCCCCEEEEEECTT----
T ss_pred CCCCceEC--ccccCCCCCeEEEE-EECCCCEEEEe----CCccEE--EEcCCCCCCEEeecCCCcceEEEEEcCC----
Confidence 23211100 00000111112222 33455566554 355442 2211111122222345567889998887
Q ss_pred CCCCCEEEEEeCCCcE-EEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEE
Q 000054 2382 GSVSPLIVTGGKGGDV-GIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRI 2460 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtV-rLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsL 2460 (2548)
+.+++.+. +|.+ +-+|- .++.-... .......+..+
T Consensus 174 ---~~~~~~g~-~G~~~~S~d~----gG~tW~~~-----------------------------------~~~~~~~~~~~ 210 (327)
T 2xbg_A 174 ---GEYVAVSS-RGSFYSTWEP----GQTAWEPH-----------------------------------NRTTSRRLHNM 210 (327)
T ss_dssp ---SCEEEEET-TSSEEEEECT----TCSSCEEE-----------------------------------ECCSSSCEEEE
T ss_pred ---CcEEEEEC-CCcEEEEeCC----CCCceeEC-----------------------------------CCCCCCcccee
Confidence 55666554 4444 33331 01111111 02234577889
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEE
Q 000054 2461 STVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLI 2539 (2548)
Q Consensus 2461 afSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIW 2539 (2548)
++++++++++. +.+|.+++.+...|+.-..+. . +.+. +. ..+.++++.+++ ++.++.+|.| ++
T Consensus 211 ~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~---~------~~~~-~~----~~~~~v~~~~~~~~~~~g~~g~i-~~ 274 (327)
T 2xbg_A 211 GFTPDGRLWMI-VNGGKIAFSDPDNSENWGELL---S------PLRR-NS----VGFLDLAYRTPNEVWLAGGAGAL-LC 274 (327)
T ss_dssp EECTTSCEEEE-ETTTEEEEEETTEEEEECCCB---C------TTSS-CC----SCEEEEEESSSSCEEEEESTTCE-EE
T ss_pred EECCCCCEEEE-eCCceEEEecCCCCCeeEecc---C------Cccc-CC----cceEEEEecCCCEEEEEeCCCeE-EE
Confidence 99999876654 567888776533343322220 0 0000 11 125677888877 6666778877 34
Q ss_pred ECCCC
Q 000054 2540 QLEDY 2544 (2548)
Q Consensus 2540 DL~sg 2544 (2548)
..+.+
T Consensus 275 S~DgG 279 (327)
T 2xbg_A 275 SQDGG 279 (327)
T ss_dssp ESSTT
T ss_pred eCCCC
Confidence 44433
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.38 E-value=13 Score=43.76 Aligned_cols=148 Identities=11% Similarity=0.119 Sum_probs=70.7
Q ss_pred CCCEEEEEE-CC-----CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC-----CcEEEE
Q 000054 2230 LRPFFLVGS-SN-----THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD-----GTVCTW 2298 (2548)
Q Consensus 2230 dG~~LASGS-~D-----GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D-----GtVrVW 2298 (2548)
++.+++.|+ .+ ..+.+||..+++-.. +...+. +. .....+. .++..++.|+.+ ..+.+|
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~---~r----~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~ 83 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITR---KR----RYVASVS--LHDRIYVIGGYDGRSRLSSVECL 83 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSS---CC----BSCEEEE--ETTEEEEECCBCSSCBCCCEEEE
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCCh---hh----ccccEEE--ECCEEEEEcCCCCCccCceEEEE
Confidence 345566665 33 368889988765322 221111 11 1112222 256777777765 368889
Q ss_pred EcCCCc---ccccccCccceeccCCcccEEEEcCCCCEEEEEeccCC--CCeEEEEECCCCCCCcceeeeccCCCeEEEE
Q 000054 2299 QLEVGG---RSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN--GINVVVWDTLAPPTSSRASITCHEGGARSIS 2373 (2548)
Q Consensus 2299 Dl~tgk---~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~--DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLa 2373 (2548)
|..+.. -....+. ......|.. ..+ ++++++.||.... ...+.+||+.+.....+..+......-..+.
T Consensus 84 d~~~~~~~~W~~~~~~--p~~r~~~~~--~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~ 157 (301)
T 2vpj_A 84 DYTADEDGVWYSVAPM--NVRRGLAGA--TTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV 157 (301)
T ss_dssp ETTCCTTCCCEEECCC--SSCCBSCEE--EEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE
T ss_pred ECCCCCCCeeEECCCC--CCCccceeE--EEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE
Confidence 987764 2221111 011122221 112 6777777763211 2368889987532222222221111112222
Q ss_pred EccCCCCCCCCCCEEEEEeCC-----CcEEEEeC
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKG-----GDVGIHDF 2402 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~D-----GtVrLWDL 2402 (2548)
+ + +.+++.||.+ ..+.+||+
T Consensus 158 ~--~-------~~iyv~GG~~~~~~~~~~~~~d~ 182 (301)
T 2vpj_A 158 A--S-------GVIYCLGGYDGLNILNSVEKYDP 182 (301)
T ss_dssp E--T-------TEEEEECCBCSSCBCCCEEEEET
T ss_pred E--C-------CEEEEECCCCCCcccceEEEEeC
Confidence 2 2 4477777755 35777773
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.21 E-value=17 Score=42.90 Aligned_cols=106 Identities=18% Similarity=0.248 Sum_probs=53.2
Q ss_pred CCEEEEEECC----CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC-----cEEEEEcC
Q 000054 2231 RPFFLVGSSN----THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG-----TVCTWQLE 2301 (2548)
Q Consensus 2231 G~~LASGS~D----GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG-----tVrVWDl~ 2301 (2548)
+.+++.|+.+ ..+..||..+.+-. .+...+. +...| ..+.. ++..++.|+.++ .+.+||..
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~-~~~~~p~---~r~~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~ 85 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWH-QVAELPS---RRCRA----GMVYM--AGLVFAVGGFNGSLRVRTVDSYDPV 85 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEE-EECCCSS---CCBSC----EEEEE--TTEEEEESCBCSSSBCCCEEEEETT
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEe-EcccCCc---ccccc----eEEEE--CCEEEEEeCcCCCccccceEEECCC
Confidence 3455566543 35888998876532 2222221 11111 12222 566777777553 57888887
Q ss_pred CCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCC---CeEEEEECCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNG---INVVVWDTLA 2353 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~D---GtVrIWDl~t 2353 (2548)
+.+-....+.. .....|... ..++.+++.||.. .+ ..+.+||+.+
T Consensus 86 ~~~W~~~~~~p--~~r~~~~~~----~~~~~iyv~GG~~-~~~~~~~~~~~d~~~ 133 (302)
T 2xn4_A 86 KDQWTSVANMR--DRRSTLGAA----VLNGLLYAVGGFD-GSTGLSSVEAYNIKS 133 (302)
T ss_dssp TTEEEEECCCS--SCCBSCEEE----EETTEEEEEEEEC-SSCEEEEEEEEETTT
T ss_pred CCceeeCCCCC--ccccceEEE----EECCEEEEEcCCC-CCccCceEEEEeCCC
Confidence 66422221110 111222221 1267778887732 11 3577888865
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=89.10 E-value=18 Score=45.07 Aligned_cols=192 Identities=11% Similarity=0.152 Sum_probs=111.0
Q ss_pred CCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccE--E-EEcCCCCE--EEEEeccCC--CCeEEEEECCCC
Q 000054 2282 YGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDV--S-YITSSGSV--IAAAGHSSN--GINVVVWDTLAP 2354 (2548)
Q Consensus 2282 dG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V--~-afSpdGsl--LATgG~SS~--DGtVrIWDl~t~ 2354 (2548)
...+++....++-+.+||+ +|+.+...+ .+..+.| . .+.-.|+. ++.+.. .. +++|.+|++...
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~-------~g~~nnVD~r~~~~l~g~~~dla~as~-R~~~~n~l~vf~iDp~ 109 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYN-------TGKLNNVDIRYDFPLNGKKVDIAAASN-RSEGKNTIEIYAIDGK 109 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEEC-------CSCEEEEEEEEEEEETTEEEEEEEEEE-CSTTCCEEEEEEECTT
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEcc-------CCCcccEEEecccccCCceEeEEEEeC-CCCCCCeEEEEEECCC
Confidence 3456777777889999999 565443221 1222222 2 13333443 334332 24 688999977421
Q ss_pred CCCcceeeec------cC-CCeEEEEE--ccCCCCCCCCCC-EEEEEeCCCcEEEEeCCcccc----CceeeeecCCCCC
Q 000054 2355 PTSSRASITC------HE-GGARSISV--FDNDLGSGSVSP-LIVTGGKGGDVGIHDFRYIAT----GKTKKHKHSDRGG 2420 (2548)
Q Consensus 2355 ~~k~v~sl~g------Hs-~~VtSLaf--sP~dlg~gs~g~-lLVSGS~DGtVrLWDLR~l~T----Gk~l~tl~~~~~~ 2420 (2548)
...+..+.. .. ..+..+++ +|.. +. ++++...+|.+..|++..... ++.++++
T Consensus 110 -~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~------g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f------ 176 (355)
T 3amr_A 110 -NGTLQSMTDPDHPIATAINEVYGFTLYHSQKT------GKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF------ 176 (355)
T ss_dssp -TCCEEECSCTTSCEECCCSSCCCEEEEECTTT------CCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE------
T ss_pred -CCceeeccccccCcCCCCCCeeEEEEEecCCC------CcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe------
Confidence 222333311 11 45666776 5642 43 688888899999999642222 2333333
Q ss_pred CCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC-----CCcEEEEeccc
Q 000054 2421 SSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK-----AAQLVYHWSKL 2495 (2548)
Q Consensus 2421 s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~-----Tgell~tL~~~ 2495 (2548)
. -.+.+..++.++....|+.+-+|.-|..+|.+ +++.+..+.
T Consensus 177 ------------------------------~-lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-- 223 (355)
T 3amr_A 177 ------------------------------K-MNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-- 223 (355)
T ss_dssp ------------------------------E-CSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS--
T ss_pred ------------------------------c-CCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec--
Confidence 1 12467889999999999999998777777755 345555441
Q ss_pred ccccccccCcccCCCCceeecEEEEEE--cCC--e--EEEEECCCcEEEEECC
Q 000054 2496 HERHTFLQPSSRGFGGVVRAGVTDIQV--VSR--G--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2496 Hs~hsfl~~tl~GH~~~V~a~VtsLaf--SPd--G--LaSGS~DGtIrIWDL~ 2542 (2548)
. +...+-+..|++ .++ | |+|+-.+.+..+||..
T Consensus 224 -------------~-g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 224 -------------G-RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp -------------S-SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred -------------C-CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 0 111122445555 444 3 5566578899999986
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=88.31 E-value=3.3 Score=56.08 Aligned_cols=222 Identities=13% Similarity=0.009 Sum_probs=110.5
Q ss_pred CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe-CCCcEEEEEcCCC----cccccccCccc
Q 000054 2240 NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LDGTVCTWQLEVG----GRSNVRPMESC 2314 (2548)
Q Consensus 2240 DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS-~DGtVrVWDl~tg----k~i~i~p~~s~ 2314 (2548)
.+.|+..++.+.+....+. ....+..|+|++.+..|+.+. ..+.|..+++... ....+..
T Consensus 385 ~~~I~~id~~~~~~~~~~~-----------~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~---- 449 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIP-----------NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS---- 449 (699)
T ss_dssp TTC-CEECTTSCCEECCSC-----------CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC----
T ss_pred ccceEEEeCCCCcceeeec-----------cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe----
Confidence 3567777776654332221 124567889998776666654 4578999998751 1111000
Q ss_pred eeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee-eccCCCeEEEEEccCCCCCCCCCCEEEEEeC
Q 000054 2315 LCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEGGARSISVFDNDLGSGSVSPLIVTGGK 2393 (2548)
Q Consensus 2315 ~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~ 2393 (2548)
..+ ..... .++.+.+..|+.+. ...+.|.+.++.. ..+..+ .........|++.|.. +.++++-..
T Consensus 450 ~~~-~~P~g-lavD~~~g~LY~tD--~~~~~I~v~d~dg---~~~~~l~~~~~~~P~giavDp~~------g~ly~td~~ 516 (699)
T 1n7d_A 450 RDI-QAPDG-LAVDWIHSNIYWTD--SVLGTVSVADTKG---VKRKTLFREQGSKPRAIVVDPVH------GFMYWTDWG 516 (699)
T ss_dssp SCC---CCC-EECCCSSSBCEECC--TTTSCEEEEBSSS---CCEEEECCCSSCCCCCEECCSSS------SCCEECCCS
T ss_pred CCC-CCcce-EEEEeeCCcEEEEe--ccCCeEEEEecCC---CceEEEEeCCCCCcceEEEccCC------CcEEEcccC
Confidence 000 11112 24554444444332 2567898888763 222222 2222345667777763 444444322
Q ss_pred C-CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCC-EEEE
Q 000054 2394 G-GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTS-LFLT 2471 (2548)
Q Consensus 2394 D-GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~-~LaS 2471 (2548)
. +.|..+++. |.....+ ....-.....|+++|++. ++++
T Consensus 517 ~~~~I~~~~~d----G~~~~~l-----------------------------------~~~~l~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 517 TPAKIKKGGLN----GVDIYSL-----------------------------------VTENIQWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp SSCCEEBCCSS----SCCCCEE-----------------------------------SCSSCSSCCCEEECTTTCCEEEE
T ss_pred CCCeEEEEeCC----CCCeeEE-----------------------------------EeCCCCCccEEEEeccCCEEEEE
Confidence 2 556555532 1111111 001122345789998754 4455
Q ss_pred EeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2472 GSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2472 GS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
-+..+.|.++|+..... .++... .. ..+|. ..|++..++ +++....+.|..++..++
T Consensus 558 D~~~~~I~~~d~dG~~~-~~~~~~--~~------~~~~P-------~glavd~~~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGNR-KTILED--EK------RLAHP-------FSLAVFEDKVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp ETTTTEEEEECSSSSCC-EEECCC--SS------SCSSC-------CCCEEETTEEEEECSTTTCEEEEETTTE
T ss_pred ecCCCeEEEEccCCCce-EEEEec--CC------cCCCc-------eEeEEECCEEEEEeCCCCeEEEEEccCC
Confidence 45677899999864332 222100 00 01111 123555666 556666788888886544
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=88.06 E-value=5 Score=49.63 Aligned_cols=162 Identities=11% Similarity=0.088 Sum_probs=94.1
Q ss_pred EEEEEccCCCEEEEEe-CCCcEEEEEcCCCcccccccCccceeccC----CcccEEEE---cCCCCEEEEEec-------
Q 000054 2275 SALQFDHYGHRFASAA-LDGTVCTWQLEVGGRSNVRPMESCLCFSS----HAMDVSYI---TSSGSVIAAAGH------- 2339 (2548)
Q Consensus 2275 tsVaFSPdG~~LaSGS-~DGtVrVWDl~tgk~i~i~p~~s~~t~~g----H~~~V~af---SpdGslLATgG~------- 2339 (2548)
-+++|++....|..++ ..|+|..||...+....+ ... .....+ |...+ .+ .++++++++...
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~-~~s~~g~~~~~~sGl-~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VID-GASSNGDGEQQMSGL-SLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCT-TTCCSSCCSEEEEEE-EESSSSSCCEEEEEEEETTTTCTT
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecC-CccccCCCcceeeEE-EEeccCCCCcEEEEEccccccccc
Confidence 4678988555555555 799999999975543222 110 000001 11122 25 577777775420
Q ss_pred ---cCCCCeEEEEECC---CCCCCccee--eeccC-----------CCeEEEEEccCCCCCCCCCCEEEEEeCC-CcEEE
Q 000054 2340 ---SSNGINVVVWDTL---APPTSSRAS--ITCHE-----------GGARSISVFDNDLGSGSVSPLIVTGGKG-GDVGI 2399 (2548)
Q Consensus 2340 ---SS~DGtVrIWDl~---t~~~k~v~s--l~gHs-----------~~VtSLafsP~dlg~gs~g~lLVSGS~D-GtVrL 2399 (2548)
.+.++.|..+|+. + ++.+.. +.... .....++..++ |+..++++.. +.|..
T Consensus 93 g~~~~g~~~v~~~Dl~~~~t--g~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~-------GnaYVt~s~~~~~I~r 163 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSEN--SKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD-------GNSYVAFALGMPAIAR 163 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTT--CCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT-------SCEEEEEEESSCEEEE
T ss_pred ccccCCCCEEEEEcCCcCCC--CCEEEEecCccccccccccccccccCCceeEECCC-------CCEEEeCCCCCCeEEE
Confidence 0126789999987 4 333322 22211 24788888887 7788888877 77766
Q ss_pred EeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcc---cCCCCCEEEEEEeCCCCEEEEEeCCC
Q 000054 2400 HDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP---KAHLGSVTRISTVPNTSLFLTGSKDG 2476 (2548)
Q Consensus 2400 WDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~---~gH~~~VtsLafSPdG~~LaSGS~DG 2476 (2548)
.|. .|+.+.. |... .......+.++++|+|..|++...+|
T Consensus 164 V~p----dG~~~~~---------------------------------~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g 206 (334)
T 2p9w_A 164 VSA----DGKTVST---------------------------------FAWESGNGGQRPGYSGITFDPHSNKLIAFGGPR 206 (334)
T ss_dssp ECT----TSCCEEE---------------------------------EEECCCCSSSCCSCSEEEEETTTTEEEEESSSS
T ss_pred EeC----CCCEEee---------------------------------eeecCCCcccccCcceEEEeCCCCEEEEEcCCC
Confidence 662 1222211 1110 11123456888999998888876688
Q ss_pred cEEEEECCC
Q 000054 2477 DVKLWDAKA 2485 (2548)
Q Consensus 2477 tIrIWDl~T 2485 (2548)
.+..+|+.+
T Consensus 207 ~L~~fD~~~ 215 (334)
T 2p9w_A 207 ALTAFDVSK 215 (334)
T ss_dssp SEEEEECSS
T ss_pred eEEEEcCCC
Confidence 899999874
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.64 E-value=45 Score=45.84 Aligned_cols=155 Identities=10% Similarity=-0.029 Sum_probs=86.7
Q ss_pred EEEEEEcCCCC-EEEEEECCCeEEEEEcCCC----ceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCCcE
Q 000054 2222 TRAFSSHPLRP-FFLVGSSNTHIYLWEFGKD----KATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGTV 2295 (2548)
Q Consensus 2222 V~~VsfSPdG~-~LASGS~DGsVrLWDl~tg----~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DGtV 2295 (2548)
+.+++|++.+. ++++-...+.|+.+++... .....+.. .......|++.+.+..|+.+ ...+.|
T Consensus 426 ~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~----------~l~~P~GLAvD~~~~~LY~tD~~~~~I 495 (791)
T 3m0c_C 426 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR----------DIQAPDGLAVDWIHSNIYWTDSVLGTV 495 (791)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS----------SCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred eEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEec----------CCCCcceeeeeecCCcEEEEecCCCeE
Confidence 47888888544 5556566788888888753 22222210 12456789998877555544 566899
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee-eccCCCeEEEEE
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEGGARSISV 2374 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-~gHs~~VtSLaf 2374 (2548)
.+.+++......+. ........-.++.|.+..|+.+... ..+.|...++.. ..+..+ ...-...+.|++
T Consensus 496 ~v~~ldG~~~~~l~------~~~l~~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~dG---~~~~~lv~~~l~~P~GLav 565 (791)
T 3m0c_C 496 SVADTKGVKRKTLF------RENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNG---VDIYSLVTENIQWPNGITL 565 (791)
T ss_dssp EEEETTSSSEEEEE------ECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTS---CCEEEEECSSCSCEEEEEE
T ss_pred EEEeCCCCeEEEEE------eCCCCCcceEEEecCCCCEEEecCC-CCCeEEEEecCC---CceEEEEeCCCCCceEEEE
Confidence 99998744321110 0000111122477765555544311 236788888753 333333 223357888999
Q ss_pred ccCCCCCCCCCCEEEEEeCCCcEEEEeC
Q 000054 2375 FDNDLGSGSVSPLIVTGGKGGDVGIHDF 2402 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~DGtVrLWDL 2402 (2548)
.+.. +.+.++-...+.|...|+
T Consensus 566 D~~~------~~LYwaD~~~~~I~~~d~ 587 (791)
T 3m0c_C 566 DLLS------GRLYWVDSKLHSISSIDV 587 (791)
T ss_dssp ETTT------TEEEEEETTTTEEEEEET
T ss_pred ecCC------CeEEEEeCCCCcEEEEec
Confidence 8773 555555556677888884
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=87.50 E-value=26 Score=50.24 Aligned_cols=175 Identities=9% Similarity=0.060 Sum_probs=94.5
Q ss_pred eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEE---EccC-CCEEEEEe----------CCCcEEEEEcCCCcccc
Q 000054 2242 HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQ---FDHY-GHRFASAA----------LDGTVCTWQLEVGGRSN 2307 (2548)
Q Consensus 2242 sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVa---FSPd-G~~LaSGS----------~DGtVrVWDl~tgk~i~ 2307 (2548)
.|++.|..+.+.+..+...+ ...+.+++ |..+ ..++++|. ..|.|.++++..++ ..
T Consensus 808 ~i~lidp~t~~~i~~~~l~~---------nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k-L~ 877 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQ---------NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK-LQ 877 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCT---------TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE-EE
T ss_pred EEEEEeCCCCeEEEEEeCCC---------CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE-EE
Confidence 36677766666665554322 13455554 3332 46788775 34789999987332 11
Q ss_pred cccCccceeccCCcccEEEEcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe--EEEEEccCCCCCCCC
Q 000054 2308 VRPMESCLCFSSHAMDVSYITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA--RSISVFDNDLGSGSV 2384 (2548)
Q Consensus 2308 i~p~~s~~t~~gH~~~V~afSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V--tSLafsP~dlg~gs~ 2384 (2548)
.. ..... .+.|.++.+ +|+++++. +++|++||+.. .+.+..-..+-..| ..+...
T Consensus 878 lv---~~~~v---~g~v~al~~~~g~Lla~i-----g~~l~vy~l~~--~~~L~~~~~~~~~i~~~~l~~~--------- 935 (1158)
T 3ei3_A 878 TV---AEKEV---KGAVYSMVEFNGKLLASI-----NSTVRLYEWTT--EKELRTECNHYNNIMALYLKTK--------- 935 (1158)
T ss_dssp EE---EEEEE---SSCEEEEEEETTEEEEEE-----TTEEEEEEECT--TSCEEEEEEECCCSCEEEEEEE---------
T ss_pred EE---EEEEc---CCcCEEEeeeCCEEEEEc-----CCEEEEEECCC--CceEEEEeeccccEEEEEEecc---------
Confidence 10 11112 234554332 45555543 58999999964 22222111111112 234332
Q ss_pred CCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeC
Q 000054 2385 SPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVP 2464 (2548)
Q Consensus 2385 g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSP 2464 (2548)
+++++.|..-..|.+.-.+. .. ..+..+ - ..-+..+++++.+-.
T Consensus 936 ~~~I~vgD~~~Sv~~~~y~~-~~-~~L~~~--------------------------------a--~D~~~~~vta~~~ld 979 (1158)
T 3ei3_A 936 GDFILVGDLMRSVLLLAYKP-ME-GNFEEI--------------------------------A--RDFNPNWMSAVEILD 979 (1158)
T ss_dssp TTEEEEEESSBCEEEEEEET-TT-TEEEEE--------------------------------E--ECCSCBCEEEEEEEE
T ss_pred CCEEEEEEhhheEEEEEEEc-CC-CeEEEE--------------------------------E--eecccccEEEEEEEc
Confidence 45888888877777765431 11 111111 0 022456788888865
Q ss_pred CCCEEEEEeCCCcEEEEECCC
Q 000054 2465 NTSLFLTGSKDGDVKLWDAKA 2485 (2548)
Q Consensus 2465 dG~~LaSGS~DGtIrIWDl~T 2485 (2548)
+ ..++.+..+|.|.+.....
T Consensus 980 ~-~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 980 D-DNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp T-TEEEEEETTSEEEEEEECT
T ss_pred c-CcEEEEcCCCcEEEEecCC
Confidence 5 4677788999999987653
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=86.74 E-value=84 Score=40.47 Aligned_cols=208 Identities=13% Similarity=0.157 Sum_probs=125.9
Q ss_pred EcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccc
Q 000054 2227 SHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRS 2306 (2548)
Q Consensus 2227 fSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i 2306 (2548)
-||..+.+|.-. ..++.|+|+++.+.++.+.. ...|.--+|-.+.. |+-.+ +..|.-|+++... .
T Consensus 73 MnP~~~iiALra-g~~lQiFnle~K~klks~~~-----------~e~VvfWkWis~~~-l~lVT-~taVyHWsi~~~s-~ 137 (494)
T 1bpo_A 73 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-----------TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGES-Q 137 (494)
T ss_dssp ECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-----------SSCCCEEEEEETTE-EEEEC-SSEEEEEESSSSC-C
T ss_pred eCCCCcEEEEec-CCeEEEEchHHhhhhcceec-----------CCCceEEEecCCCe-EEEEc-CCeeEEecccCCC-C
Confidence 357777777654 67899999999988887643 14566667754433 33332 5689999997522 1
Q ss_pred ccccCccceeccCCc----ccEEE--EcCCCCEEEEEeccCC----CCeEEEEECCCCCCCcceeeeccCCCeEEEEEcc
Q 000054 2307 NVRPMESCLCFSSHA----MDVSY--ITSSGSVIAAAGHSSN----GINVVVWDTLAPPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2307 ~i~p~~s~~t~~gH~----~~V~a--fSpdGslLATgG~SS~----DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
+.+.+..|. ..|.. .+++.+.++..|-+.. .|.+.+|..+. +.-+.+.||......+....
T Consensus 138 ------P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er---~~sQ~ieGhaa~F~~~~~~g 208 (494)
T 1bpo_A 138 ------PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR---KVSQPIEGHAASFAQFKMEG 208 (494)
T ss_dssp ------CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT---CCEEEECCSEEEEEEEECTT
T ss_pred ------chhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc---cccchheeeeeeeEEEecCC
Confidence 122233332 34443 6788888887664322 36788999863 45677788877666665432
Q ss_pred CCCCCCCCCCEEEEEeCC---CcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcc---
Q 000054 2377 NDLGSGSVSPLIVTGGKG---GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP--- 2450 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~D---GtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~--- 2450 (2548)
+. ....+++-+... +.++|-++.....+... + .-+..+++
T Consensus 209 ~~----~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~--f----------------------------~kk~vdv~fpp 254 (494)
T 1bpo_A 209 NA----EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQP--F----------------------------PKKAVDVFFPP 254 (494)
T ss_dssp CS----SEEEEEEEEECSTTCCEEEEEECSCCCTTCCC--C----------------------------CCEEEECCCCT
T ss_pred CC----CCceEEEEEEecCCCcEEEEEEcCCCccCCCC--c----------------------------cceeeeeeCCc
Confidence 21 012244444433 67777775321011100 0 00112221
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
..-.+---++..++.-..++.-+.-|.|+++|+.++.++..-
T Consensus 255 e~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~n 296 (494)
T 1bpo_A 255 EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (494)
T ss_dssp TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeee
Confidence 122334457888998888999999999999999999998744
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=86.22 E-value=22 Score=45.41 Aligned_cols=167 Identities=12% Similarity=0.166 Sum_probs=98.0
Q ss_pred EEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeecc----CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEE
Q 000054 2324 VSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCH----EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGI 2399 (2548)
Q Consensus 2324 V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gH----s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrL 2399 (2548)
......+|..++.+ .++.||.-++... ...+.+... -+.|..+..+|+ |++|+..+ +..|.|
T Consensus 25 ~~~~~~n~t~i~~a----~~n~iR~~~i~~~--~~Yk~L~~~~~i~f~~i~qlvlSps-------G~lLAl~g-~~~V~V 90 (452)
T 3pbp_A 25 YIFSSQNGTRIVFI----QDNIIRWYNVLTD--SLYHSLNFSRHLVLDDTFHVISSTS-------GDLLCLFN-DNEIFV 90 (452)
T ss_dssp EEEEETTTTEEEEE----ETTEEEEEETTTC--SSCEEEECTTTCCCCTTCEEEECTT-------SSEEEEEC-SSEEEE
T ss_pred EEEEEcCCCEEEEE----ECCEEEEEECCCC--CcceEEecCcccccCceeEEEECCC-------CCEEEEec-CCeEEE
Confidence 33445677777776 5789998888742 234444432 235788999998 78888876 557888
Q ss_pred EeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc---CCCCCEEEEEEeCC---CCEEEEEe
Q 000054 2400 HDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK---AHLGSVTRISTVPN---TSLFLTGS 2473 (2548)
Q Consensus 2400 WDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~---gH~~~VtsLafSPd---G~~LaSGS 2473 (2548)
-.+. .+..... . ++ ....-.++-|++-. ....+|..+.|||- +..|++-.
T Consensus 91 v~LP---~~~~~~~-------~-----------~~---~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt 146 (452)
T 3pbp_A 91 MEVP---WGYSNVE-------D-----------VS---IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK 146 (452)
T ss_dssp EECC---TTCSCCC-------C-----------HH---HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred EEec---CccccCc-------c-----------cc---cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence 8853 1110000 0 00 00000122233211 13678999999994 57999999
Q ss_pred CCCcEEEEECCCC--cEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEE--EECCCcEEE
Q 000054 2474 KDGDVKLWDAKAA--QLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLS--CGGDGSVKL 2538 (2548)
Q Consensus 2474 ~DGtIrIWDl~Tg--ell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaS--GS~DGtIrI 2538 (2548)
.|+.|++||+... ++. .++. .... .|-...+ .-|.+++|.++| |.. .+.+|.|+-
T Consensus 147 sD~~Ir~yDl~~s~~~P~-~L~k--~~~~------fg~d~~~-~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 147 EDDTITMFDILNSQEKPI-VLNK--PNNS------FGLDARV-NDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp TTSCEEEEETTCTTSCCE-EESC--CCSE------EESCSSC-CCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred cCCEEEEEEcccCCCCCc-chhc--cccc------cCCCccc-ceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 9999999999852 233 4421 1111 1323333 346788999988 444 447777653
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=86.22 E-value=14 Score=45.77 Aligned_cols=164 Identities=13% Similarity=0.072 Sum_probs=94.2
Q ss_pred EEEEEcCCCCEEEEEE-CCCeEEEEEcCCCceeEEEeccCCCCCCCCC-CCCCeEEEEE---ccCCCEEEEEe-------
Q 000054 2223 RAFSSHPLRPFFLVGS-SNTHIYLWEFGKDKATATYGVLPAANVPPPY-ALASISALQF---DHYGHRFASAA------- 2290 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS-~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~-H~~~VtsVaF---SPdG~~LaSGS------- 2290 (2548)
-+..|++....+..++ ..++|..||...+..... ..++- ...+ ....+..|.| .|+++++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~--~~~~~--s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV--VIDGA--SSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE--CCTTT--CCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE--ecCCc--cccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 3567878555555555 789999999876644333 12210 0000 0123689999 68877777544
Q ss_pred ------CCCcEEEEEcC---CCcccccccCccce----eccCCcc-cE--EEEcCCCCEEEEEeccCCC-CeEEEEECCC
Q 000054 2291 ------LDGTVCTWQLE---VGGRSNVRPMESCL----CFSSHAM-DV--SYITSSGSVIAAAGHSSNG-INVVVWDTLA 2353 (2548)
Q Consensus 2291 ------~DGtVrVWDl~---tgk~i~i~p~~s~~----t~~gH~~-~V--~afSpdGslLATgG~SS~D-GtVrIWDl~t 2353 (2548)
.+..|..+|+. +++........... ...+... .. ..+.++|+..+++. .. +.|...+..
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s---~~~~~I~rV~pd- 167 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFA---LGMPAIARVSAD- 167 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEE---ESSCEEEEECTT-
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCC---CCCCeEEEEeCC-
Confidence 26789999998 66543211100000 0001111 11 13788999888865 45 565555554
Q ss_pred CCCCcceeee------ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCC
Q 000054 2354 PPTSSRASIT------CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFR 2403 (2548)
Q Consensus 2354 ~~~k~v~sl~------gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR 2403 (2548)
++.+..+. ...-+.+.|+++|+ +..|++...+|.+..+|++
T Consensus 168 --G~~~~~~~~~~~~~~~~~G~nGIv~~pd-------g~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 168 --GKTVSTFAWESGNGGQRPGYSGITFDPH-------SNKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp --SCCEEEEEECCCCSSSCCSCSEEEEETT-------TTEEEEESSSSSEEEEECS
T ss_pred --CCEEeeeeecCCCcccccCcceEEEeCC-------CCEEEEEcCCCeEEEEcCC
Confidence 22222221 11234678999998 6677776669999999965
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=85.95 E-value=11 Score=47.84 Aligned_cols=116 Identities=13% Similarity=0.047 Sum_probs=65.4
Q ss_pred CCeEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCC--CCeEEE
Q 000054 2272 ASISALQFDH-YGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN--GINVVV 2348 (2548)
Q Consensus 2272 ~~VtsVaFSP-dG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~--DGtVrI 2348 (2548)
.....|+++| ++..|+.+...+.|+.+|.+.+....+.. ......-.+++++|+.++++..... ...+..
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-------~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~ 209 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-------GLSKVRTICWTHEADSMIITNDQNNNDRPNNYI 209 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-------CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEE
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-------CCCCcceEEEeCCCCEEEEEeCCCCcccceEEE
Confidence 4567899998 45667777666889999987654221110 1111122358899996666542100 113444
Q ss_pred EECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeC
Q 000054 2349 WDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDF 2402 (2548)
Q Consensus 2349 WDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDL 2402 (2548)
.+... .......+. .......++++|.+ +.++++-..++.|..+|.
T Consensus 210 ~~~~g-~~~~~~~l~-~~~~p~giavdp~~------g~lyv~d~~~~~V~~~~~ 255 (430)
T 3tc9_A 210 LTRES-GFKVITELT-KGQNCNGAETHPIN------GELYFNSWNAGQVFRYDF 255 (430)
T ss_dssp EEGGG-TSCSEEEEE-ECSSCCCEEECTTT------CCEEEEETTTTEEEEEET
T ss_pred EeCCC-ceeeeeeec-cCCCceEEEEeCCC------CEEEEEECCCCEEEEEEC
Confidence 44322 111112222 23345677888853 667777777888999994
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=85.44 E-value=38 Score=43.07 Aligned_cols=161 Identities=14% Similarity=0.086 Sum_probs=85.8
Q ss_pred CCeEEEEEccC--CCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCC-eEEE
Q 000054 2272 ASISALQFDHY--GHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGI-NVVV 2348 (2548)
Q Consensus 2272 ~~VtsVaFSPd--G~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DG-tVrI 2348 (2548)
.....|+|+|+ +..|+.+...+.|+.+|..++....+.. ......-.+++++|+++++......+. .+..
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-------~~~~P~giavd~dG~lyVad~~~~~~~~gv~~ 211 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-------NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYL 211 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-------CCSCEEEEEECTTCCEEEEECCSCTTSEEEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-------CCCCccEEEECCCCCEEEEcCCCCcccceEEE
Confidence 45678999984 4556666655899999987664322110 111112235889999555431000011 2333
Q ss_pred EECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccc
Q 000054 2349 WDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAH 2428 (2548)
Q Consensus 2349 WDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~v 2428 (2548)
.+.... ......+ ..-.....+++.|.+ +.+.++-..++.|+.+| ..++.....+.
T Consensus 212 ~~~~~~-~~~~~~~-~~~~~P~giavd~~~------G~lyv~d~~~~~V~~~d---~~~g~~~~~~~------------- 267 (433)
T 4hw6_A 212 FTRASG-FTERLSL-CNARGAKTCAVHPQN------GKIYYTRYHHAMISSYD---PATGTLTEEEV------------- 267 (433)
T ss_dssp ECGGGT-TCCEEEE-EECSSBCCCEECTTT------CCEEECBTTCSEEEEEC---TTTCCEEEEEE-------------
T ss_pred EECCCC-eeccccc-cccCCCCEEEEeCCC------CeEEEEECCCCEEEEEE---CCCCeEEEEEe-------------
Confidence 332210 1101111 123445667777743 66776766778888888 34444322220
Q ss_pred ccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEE-eCCCcEEEEECC
Q 000054 2429 ADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTG-SKDGDVKLWDAK 2484 (2548)
Q Consensus 2429 afSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSG-S~DGtIrIWDl~ 2484 (2548)
. .+....-..++|+|++++|+.+ ...+.|+.++..
T Consensus 268 -------------------~--~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 268 -------------------M--MDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp -------------------E--CSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred -------------------c--cCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 0 0111122469999999855444 556789998865
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.05 E-value=64 Score=38.31 Aligned_cols=103 Identities=11% Similarity=0.136 Sum_probs=51.6
Q ss_pred EEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC----CC-------cEEEEEcCC
Q 000054 2234 FLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL----DG-------TVCTWQLEV 2302 (2548)
Q Consensus 2234 LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~----DG-------tVrVWDl~t 2302 (2548)
++.|+ ..+.+||..+++-.. ...+. + ...........++..++.|+. ++ .+.+||..+
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~-----p--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~ 76 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC--ASLSS-----Q--VPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLD 76 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE--EECCC-----C--SCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTT
T ss_pred EEEcC--CceEEECCCCCeEec--CCCCC-----C--CCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCC
Confidence 44555 579999998877433 21111 0 012222233347777888874 11 266788876
Q ss_pred CcccccccCccceeccCCcccEEEEcCCCCEEEEEecc-----CCCCeEEEEECCC
Q 000054 2303 GGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHS-----SNGINVVVWDTLA 2353 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~S-----S~DGtVrIWDl~t 2353 (2548)
++-....+.. .....|.. ..+ ++.+++.||.. ..-..+.+||..+
T Consensus 77 ~~W~~~~~~p--~~r~~~~~--~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~ 126 (315)
T 4asc_A 77 SEWLGMPPLP--SPRCLFGL--GEA--LNSIYVVGGREIKDGERCLDSVMCYDRLS 126 (315)
T ss_dssp TEEEECCCBS--SCEESCEE--EEE--TTEEEEECCEESSTTCCBCCCEEEEETTT
T ss_pred CeEEECCCCC--cchhceeE--EEE--CCEEEEEeCCcCCCCCcccceEEEECCCC
Confidence 5422211110 11122221 112 66777777631 1124588899875
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=84.80 E-value=94 Score=40.00 Aligned_cols=129 Identities=11% Similarity=0.140 Sum_probs=75.3
Q ss_pred CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceecc
Q 000054 2239 SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFS 2318 (2548)
Q Consensus 2239 ~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~ 2318 (2548)
.+.+|.|-|+.++..+..-.. .--+.-.+|..+.+|.=. ..++.++|+++..+... +.
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi-------------~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks--------~~ 103 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPI-------------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA--------HT 103 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEEC-------------CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEE--------EE
T ss_pred CCCeEEEEECCCCCcceeccc-------------ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcc--------ee
Confidence 444789999987665433111 111334566666555544 68999999998754432 22
Q ss_pred CCcccEEEEcC-CCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCC----CeEEEEEccCCCCCCCCCCEEEEEe-
Q 000054 2319 SHAMDVSYITS-SGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG----GARSISVFDNDLGSGSVSPLIVTGG- 2392 (2548)
Q Consensus 2319 gH~~~V~afSp-dGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~----~VtSLafsP~dlg~gs~g~lLVSGS- 2392 (2548)
-.. +|.+|.+ +.+.++.. .+..|+.|++.. +..++..+..|.. .|..-..+++ .++++..|
T Consensus 104 ~~e-~VvfWkWis~~~l~lV----T~taVyHWsi~~-~s~P~kvFdR~~~L~~~QIInY~~d~~-------~kW~~l~GI 170 (494)
T 1bpo_A 104 MTD-DVTFWKWISLNTVALV----TDNAVYHWSMEG-ESQPVKMFDRHSSLAGCQIINYRTDAK-------QKWLLLTGI 170 (494)
T ss_dssp CSS-CCCEEEEEETTEEEEE----CSSEEEEEESSS-SCCCEEEEECCGGGTTCEEEEEEECTT-------SSEEEEEEE
T ss_pred cCC-CceEEEecCCCeEEEE----cCCeeEEecccC-CCCchhheecchhcccceEEEEEECCC-------CCeEEEEee
Confidence 222 3443221 33566665 378999999975 3567777776542 3444444554 56655443
Q ss_pred ------CCCcEEEEeC
Q 000054 2393 ------KGGDVGIHDF 2402 (2548)
Q Consensus 2393 ------~DGtVrLWDL 2402 (2548)
-.|.+.+|..
T Consensus 171 ~~~~~~v~G~mQLYS~ 186 (494)
T 1bpo_A 171 SAQQNRVVGAMQLYSV 186 (494)
T ss_dssp EEETTEEEEEEEEEES
T ss_pred cccCCcccceEEEeec
Confidence 2466777774
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=84.54 E-value=2.4 Score=57.38 Aligned_cols=207 Identities=11% Similarity=0.022 Sum_probs=108.4
Q ss_pred EEEEEcCCCCEEEEE-ECCCeEEEEEcCCC----ceeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCCcEE
Q 000054 2223 RAFSSHPLRPFFLVG-SSNTHIYLWEFGKD----KATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVC 2296 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASG-S~DGsVrLWDl~tg----~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DGtVr 2296 (2548)
.+++|++.+..|..+ ...+.|+.+++.+. .....+ . ........|++.+. ++.+++-...+.|.
T Consensus 409 ~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i---~-------~~~~~P~glavD~~~g~LY~tD~~~~~I~ 478 (699)
T 1n7d_A 409 VALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVI---S-------RDIQAPDGLAVDWIHSNIYWTDSVLGTVS 478 (699)
T ss_dssp CCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBC---C-------SCC--CCCEECCCSSSBCEECCTTTSCEE
T ss_pred EEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEE---e-------CCCCCcceEEEEeeCCcEEEEeccCCeEE
Confidence 567788866655544 45678888887751 111111 0 01123456788764 44444445668899
Q ss_pred EEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee-eccCCCeEEEEEc
Q 000054 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEGGARSISVF 2375 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-~gHs~~VtSLafs 2375 (2548)
+.++.......+... -......+ ++.|.+..|+.+... ..+.|...++.. .....+ ...-...+.|++.
T Consensus 479 v~d~dg~~~~~l~~~-----~~~~P~gi-avDp~~g~ly~td~~-~~~~I~~~~~dG---~~~~~l~~~~l~~PnGlavd 548 (699)
T 1n7d_A 479 VADTKGVKRKTLFRE-----QGSKPRAI-VVDPVHGFMYWTDWG-TPAKIKKGGLNG---VDIYSLVTENIQWPNGITLD 548 (699)
T ss_dssp EEBSSSCCEEEECCC-----SSCCCCCE-ECCSSSSCCEECCCS-SSCCEEBCCSSS---CCCCEESCSSCSSCCCEEEC
T ss_pred EEecCCCceEEEEeC-----CCCCcceE-EEccCCCcEEEcccC-CCCeEEEEeCCC---CCeeEEEeCCCCCccEEEEe
Confidence 998875432111100 00112222 467755444443210 226677777653 222222 1222456778998
Q ss_pred cCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCC
Q 000054 2376 DNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLG 2455 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~ 2455 (2548)
|.+ +.+.++-+..+.|..+|+. +...+.+... .+...
T Consensus 549 ~~~------~~LY~aD~~~~~I~~~d~d----G~~~~~~~~~---------------------------------~~~~~ 585 (699)
T 1n7d_A 549 LLS------GRLYWVDSKLHSISSIDVN----GGNRKTILED---------------------------------EKRLA 585 (699)
T ss_dssp TTT------CCEEEEETTTTEEEEECSS----SSCCEEECCC---------------------------------SSSCS
T ss_pred ccC------CEEEEEecCCCeEEEEccC----CCceEEEEec---------------------------------CCcCC
Confidence 874 6677777778889999853 2222222000 00111
Q ss_pred CEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000054 2456 SVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2456 ~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
....|++..+ .++++....+.|..+|..+|+.+.++.
T Consensus 586 ~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 586 HPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp SCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred CceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 2234445443 455555567889999988888877663
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=84.11 E-value=21 Score=45.55 Aligned_cols=156 Identities=12% Similarity=0.084 Sum_probs=90.3
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccC--CcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCC-
Q 000054 2281 HYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSS--HAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPP- 2355 (2548)
Q Consensus 2281 PdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~g--H~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~- 2355 (2548)
.+|..++.+- ++.||.-++..+..-+ ... ... ....+ ...+|+|+++|..| +..|.|-.+-.+.
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk-----~L~-~~~~i~f~~i~qlvlSpsG~lLAl~g----~~~V~Vv~LP~~~~ 98 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYH-----SLN-FSRHLVLDDTFHVISSTSGDLLCLFN----DNEIFVMEVPWGYS 98 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCE-----EEE-CTTTCCCCTTCEEEECTTSSEEEEEC----SSEEEEEECCTTCS
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcce-----EEe-cCcccccCceeEEEECCCCCEEEEec----CCeEEEEEecCccc
Confidence 3555555543 3677777776432111 111 111 01122 34899999999985 7899998875211
Q ss_pred --C-----Ccc--eeeec------cCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCC
Q 000054 2356 --T-----SSR--ASITC------HEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGG 2420 (2548)
Q Consensus 2356 --~-----k~v--~sl~g------Hs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~ 2420 (2548)
. ..+ ..+.- ...+|..+.|||-. ..+..|++-..|+.|++||+.. ...+.. .+...
T Consensus 99 ~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~----~~ds~LVVLtsD~~Ir~yDl~~-s~~~P~-~L~k~--- 169 (452)
T 3pbp_A 99 NVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKS----YRDSCIVVLKEDDTITMFDILN-SQEKPI-VLNKP--- 169 (452)
T ss_dssp CCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTB----GGGCEEEEEETTSCEEEEETTC-TTSCCE-EESCC---
T ss_pred cCcccccccccceeEEEcCCcccCCCCceeEEEecccc----CCCCeEEEEecCCEEEEEEccc-CCCCCc-chhcc---
Confidence 0 011 12221 24679999999983 4467999999999999999753 222222 22100
Q ss_pred CCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEe--CCCcEEE
Q 000054 2421 SSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGS--KDGDVKL 2480 (2548)
Q Consensus 2421 s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS--~DGtIrI 2480 (2548)
. . .|. .......|.+++|..++-.|...+ ..|.|+-
T Consensus 170 ~----~--~fg------------------~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 170 N----N--SFG------------------LDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp C----S--EEE------------------SCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred c----c--ccC------------------CCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 0 0 000 023446788999998876666655 7788865
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.98 E-value=13 Score=44.08 Aligned_cols=148 Identities=22% Similarity=0.233 Sum_probs=72.9
Q ss_pred CCCEEEEEECC-----CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC-----cEEEEE
Q 000054 2230 LRPFFLVGSSN-----THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG-----TVCTWQ 2299 (2548)
Q Consensus 2230 dG~~LASGS~D-----GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG-----tVrVWD 2299 (2548)
++.+++.|+.+ ..+.+||..+.+-... ...+. +...| ..+.+ ++..++.|+.++ .+.+||
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~-~~~p~---~r~~~----~~~~~--~~~iyv~GG~~~~~~~~~~~~~d 130 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV-ANMRD---RRSTL----GAAVL--NGLLYAVGGFDGSTGLSSVEAYN 130 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE-CCCSS---CCBSC----EEEEE--TTEEEEEEEECSSCEEEEEEEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeC-CCCCc---cccce----EEEEE--CCEEEEEcCCCCCccCceEEEEe
Confidence 56677777654 3588899887653322 22111 11111 22222 577777787664 567788
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCC----CCeEEEEECCCCCCCcceeeeccCCCeEEEEEc
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN----GINVVVWDTLAPPTSSRASITCHEGGARSISVF 2375 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~----DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafs 2375 (2548)
..+.+-....+.. .....|.. ...++++++.||.... -..+.+||+.+.....+..+.........+.+
T Consensus 131 ~~~~~W~~~~~~p--~~r~~~~~----~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~- 203 (302)
T 2xn4_A 131 IKSNEWFHVAPMN--TRRSSVGV----GVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL- 203 (302)
T ss_dssp TTTTEEEEECCCS--SCCBSCEE----EEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-
T ss_pred CCCCeEeecCCCC--CcccCceE----EEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE-
Confidence 7765422221110 11122221 1126677777764211 24588899875322222222211111222222
Q ss_pred cCCCCCCCCCCEEEEEeCCC-----cEEEEeC
Q 000054 2376 DNDLGSGSVSPLIVTGGKGG-----DVGIHDF 2402 (2548)
Q Consensus 2376 P~dlg~gs~g~lLVSGS~DG-----tVrLWDL 2402 (2548)
+ +.+++.||.++ .+.+||+
T Consensus 204 -~-------~~iyv~GG~~~~~~~~~~~~yd~ 227 (302)
T 2xn4_A 204 -N-------NLLYAVGGHDGPLVRKSVEVYDP 227 (302)
T ss_dssp -T-------TEEEEECCBSSSSBCCCEEEEET
T ss_pred -C-------CEEEEECCCCCCcccceEEEEeC
Confidence 2 45777777653 6778884
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=83.89 E-value=1.3e+02 Score=40.18 Aligned_cols=226 Identities=9% Similarity=0.004 Sum_probs=125.9
Q ss_pred EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEEcCCCcccccccC
Q 000054 2233 FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGTVCTWQLEVGGRSNVRPM 2311 (2548)
Q Consensus 2233 ~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DGtVrVWDl~tgk~i~i~p~ 2311 (2548)
+|+.+ ..+.|+..++++......+. . .....+..|+|++.+..++.+ ..++.|..++++......+...
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~--------~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~ 77 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIP--------L-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF 77 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECC--------C-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEE--------c-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC
Confidence 44443 56789999998654333221 1 112568999999976666554 5568898888875432111100
Q ss_pred ccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee-eccCCCeEEEEEccCCCCCCCCCCEEEE
Q 000054 2312 ESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEGGARSISVFDNDLGSGSVSPLIVT 2390 (2548)
Q Consensus 2312 ~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-~gHs~~VtSLafsP~dlg~gs~g~lLVS 2390 (2548)
-...... .++.+.+..|+.+. +..+.|.+.++.. .....+ ...-.....|++.|.. +.+.++
T Consensus 78 -----g~~~P~G-lAvD~~~~~LY~tD--~~~~~I~v~~~dG---~~~~~l~~~~l~~P~~iavdp~~------G~lY~t 140 (628)
T 4a0p_A 78 -----GLDYPEG-MAVDWLGKNLYWAD--TGTNRIEVSKLDG---QHRQVLVWKDLDSPRALALDPAE------GFMYWT 140 (628)
T ss_dssp -----SCSCCCE-EEEETTTTEEEEEE--TTTTEEEEEETTS---TTCEEEECSSCCCEEEEEEETTT------TEEEEE
T ss_pred -----CCCCcce-EEEEeCCCEEEEEE--CCCCEEEEEecCC---CcEEEEEeCCCCCcccEEEccCC------CeEEEe
Confidence 0011222 34666655555554 3678899999864 222222 2334567899998863 445555
Q ss_pred E-eCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEE
Q 000054 2391 G-GKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLF 2469 (2548)
Q Consensus 2391 G-S~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~L 2469 (2548)
- +..+.|...++. |.....+ . . .-.....|++++++..|
T Consensus 141 D~g~~~~I~r~~~d----G~~~~~l--------------------------------~---~-~~~~P~GlalD~~~~~L 180 (628)
T 4a0p_A 141 EWGGKPKIDRAAMD----GSERTTL--------------------------------V---P-NVGRANGLTIDYAKRRL 180 (628)
T ss_dssp ECSSSCEEEEEETT----SCSCEEE--------------------------------E---C-SCSSEEEEEEETTTTEE
T ss_pred CCCCCCEEEEEeCC----CCceEEE--------------------------------E---C-CCCCcceEEEccccCEE
Confidence 3 224566666632 1111111 0 1 23456789999977666
Q ss_pred EEEe-CCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEECCCC
Q 000054 2470 LTGS-KDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2470 aSGS-~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL~sg 2544 (2548)
+.+. ..+.|...|+..... ..+. .+. .....+++..+. ++|-...+.|...|..++
T Consensus 181 Y~aD~~~~~I~~~d~dG~~~-~v~~-------------~~l-----~~P~glav~~~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 181 YWTDLDTNLIESSNMLGLNR-EVIA-------------DDL-----PHPFGLTQYQDYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp EEEETTTTEEEEEETTSCSC-EEEE-------------ECC-----SCEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred EEEECCCCEEEEEcCCCCce-EEee-------------ccC-----CCceEEEEECCEEEEecCCCCEEEEEECCCC
Confidence 6664 467889999865433 2221 000 012345666655 456556777877776554
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.85 E-value=13 Score=44.09 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=57.9
Q ss_pred CCCEEEEEECC----CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC------CcEEEEE
Q 000054 2230 LRPFFLVGSSN----THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD------GTVCTWQ 2299 (2548)
Q Consensus 2230 dG~~LASGS~D----GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D------GtVrVWD 2299 (2548)
++.+++.|+.+ ..+.+||..+++-... ...+. +... -..+.+ ++..++.|+.+ ..+.+||
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~-~~~p~---~r~~----~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d 124 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSK-LGPPT---PRDS----LAACAA--EGKIYTSGGSEVGNSALYLFECYD 124 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEE-ECCSS---CCBS----CEEEEE--TTEEEEECCBBTTBSCCCCEEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEEC-CCCCc---cccc----eeEEEE--CCEEEEECCCCCCCcEeeeEEEEe
Confidence 56677777755 6788999888754332 22221 1111 122222 57777777765 4688889
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCC------CCeEEEEECCCC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN------GINVVVWDTLAP 2354 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~------DGtVrIWDl~t~ 2354 (2548)
..+..-....+. ......|.. ...++++++.||.... -..+.+||+.+.
T Consensus 125 ~~~~~W~~~~~~--p~~r~~~~~----~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 125 TRTESWHTKPSM--LTQRCSHGM----VEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp TTTTEEEEECCC--SSCCBSCEE----EEETTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred CCCCceEeCCCC--cCCcceeEE----EEECCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 877642222111 011222221 1126677777764211 345888998763
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.71 E-value=14 Score=43.50 Aligned_cols=148 Identities=14% Similarity=0.204 Sum_probs=73.1
Q ss_pred CCCEEEEEECC-----CeEEEEEcCCCc---eeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC-----cEE
Q 000054 2230 LRPFFLVGSSN-----THIYLWEFGKDK---ATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG-----TVC 2296 (2548)
Q Consensus 2230 dG~~LASGS~D-----GsVrLWDl~tg~---~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG-----tVr 2296 (2548)
++.+++.|+.+ ..+.+||..+++ -.. +...+. +. ..-..+.. ++..++.|+.++ .+.
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~-~~~~p~---~r----~~~~~~~~--~~~lyv~GG~~~~~~~~~~~ 131 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYS-VAPMNV---RR----GLAGATTL--GDMIYVSGGFDGSRRHTSME 131 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEE-ECCCSS---CC----BSCEEEEE--TTEEEEECCBCSSCBCCEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEE-CCCCCC---Cc----cceeEEEE--CCEEEEEcccCCCcccceEE
Confidence 46677777755 468899988765 222 222111 11 11122222 567777776543 577
Q ss_pred EEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCC--CCeEEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000054 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSN--GINVVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~--DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
+||..+.+-....+.. .....|.. ...++++++.||.... -..+.+||+.+.....+..+.........+.+
T Consensus 132 ~~d~~~~~W~~~~~~p--~~r~~~~~----~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 205 (301)
T 2vpj_A 132 RYDPNIDQWSMLGDMQ--TAREGAGL----VVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL 205 (301)
T ss_dssp EEETTTTEEEEEEECS--SCCBSCEE----EEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred EEcCCCCeEEECCCCC--CCcccceE----EEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE
Confidence 8888766422221110 11122221 1126777777763211 24688899875322222222211111222222
Q ss_pred ccCCCCCCCCCCEEEEEeCC-----CcEEEEeC
Q 000054 2375 FDNDLGSGSVSPLIVTGGKG-----GDVGIHDF 2402 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~D-----GtVrLWDL 2402 (2548)
+ +.+++.||.+ ..|.+||+
T Consensus 206 --~-------~~i~v~GG~~~~~~~~~v~~yd~ 229 (301)
T 2vpj_A 206 --N-------DHIYVVGGFDGTAHLSSVEAYNI 229 (301)
T ss_dssp --T-------TEEEEECCBCSSSBCCCEEEEET
T ss_pred --C-------CEEEEEeCCCCCcccceEEEEeC
Confidence 2 4477777764 46788884
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.50 E-value=34 Score=40.38 Aligned_cols=106 Identities=8% Similarity=-0.073 Sum_probs=53.8
Q ss_pred CEEEEEEC--CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC----CcEEEEEcCCCcc
Q 000054 2232 PFFLVGSS--NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD----GTVCTWQLEVGGR 2305 (2548)
Q Consensus 2232 ~~LASGS~--DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D----GtVrVWDl~tgk~ 2305 (2548)
.+++.|+. ...+.+||..+++-. .+...+. +. ..-..+.+ ++..++.|+.+ ..+.+||..+..-
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~-~~~~~p~---~r----~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W 82 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWT-DIRCPFE---KR----RDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSW 82 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEE-ECCCCSC---CC----BSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEE
T ss_pred eEEEEeCCCCCceEEEecCCCCCEe-cCCCCCc---cc----ceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeE
Confidence 34556654 357889998876533 2222111 11 11122222 56677777755 5788888877642
Q ss_pred cccccCccceeccCCcccEEEEcCCCCEEEEEecc---CCCCeEEEEECCC
Q 000054 2306 SNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHS---SNGINVVVWDTLA 2353 (2548)
Q Consensus 2306 i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~S---S~DGtVrIWDl~t 2353 (2548)
....+. ......|.. . ..++++++.||.. ..-..+.+||..+
T Consensus 83 ~~~~~~--p~~r~~~~~--~--~~~~~iyv~GG~~~~~~~~~~~~~~d~~~ 127 (306)
T 3ii7_A 83 YSKLGP--PTPRDSLAA--C--AAEGKIYTSGGSEVGNSALYLFECYDTRT 127 (306)
T ss_dssp EEEECC--SSCCBSCEE--E--EETTEEEEECCBBTTBSCCCCEEEEETTT
T ss_pred EECCCC--CccccceeE--E--EECCEEEEECCCCCCCcEeeeEEEEeCCC
Confidence 222111 011122221 1 1266777777631 0124588899875
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=82.73 E-value=1.1e+02 Score=40.68 Aligned_cols=155 Identities=10% Similarity=-0.016 Sum_probs=89.6
Q ss_pred EEEEEEcCCCCEEE-EEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFL-VGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LA-SGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DGtVrVWD 2299 (2548)
..+++|++.+..+. +-..++.|+.++.+.......+.. .......+++.+.+..|+.+ ...+.|.+.+
T Consensus 39 ~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~----------g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~ 108 (628)
T 4a0p_A 39 ASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEF----------GLDYPEGMAVDWLGKNLYWADTGTNRIEVSK 108 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS----------SCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeC----------CCCCcceEEEEeCCCEEEEEECCCCEEEEEe
Confidence 47889998655544 556678899988875443333211 11346788898765555544 4567899998
Q ss_pred cCCCcccccccCccceeccCCcc-cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAM-DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~-~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
++........ ...-.. .-.++.|....+..+... ..+.|...++.. .....+...-.....|++.+..
T Consensus 109 ~dG~~~~~l~-------~~~l~~P~~iavdp~~G~lY~tD~g-~~~~I~r~~~dG---~~~~~l~~~~~~P~GlalD~~~ 177 (628)
T 4a0p_A 109 LDGQHRQVLV-------WKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRAAMDG---SERTTLVPNVGRANGLTIDYAK 177 (628)
T ss_dssp TTSTTCEEEE-------CSSCCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTS---CSCEEEECSCSSEEEEEEETTT
T ss_pred cCCCcEEEEE-------eCCCCCcccEEEccCCCeEEEeCCC-CCCEEEEEeCCC---CceEEEECCCCCcceEEEcccc
Confidence 8744221110 011111 122467644444443211 256777777753 3333333344577899999873
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCC
Q 000054 2379 LGSGSVSPLIVTGGKGGDVGIHDFR 2403 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR 2403 (2548)
+.+.++-...+.|...|+.
T Consensus 178 ------~~LY~aD~~~~~I~~~d~d 196 (628)
T 4a0p_A 178 ------RRLYWTDLDTNLIESSNML 196 (628)
T ss_dssp ------TEEEEEETTTTEEEEEETT
T ss_pred ------CEEEEEECCCCEEEEEcCC
Confidence 4556666677888888853
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=81.10 E-value=72 Score=42.54 Aligned_cols=156 Identities=13% Similarity=0.006 Sum_probs=86.3
Q ss_pred EEEEEEcCCCCEEE-EEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFL-VGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LA-SGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DGtVrVWD 2299 (2548)
..+++|++.+..|. +-...+.|..++.+.......+-. . .......+++++.+..|+.+ ..++.|.+.+
T Consensus 42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~-~--------~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~ 112 (619)
T 3s94_A 42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV-S--------GLLSPDGLACDWLGEKLYWTDSETNRIEVSN 112 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEEC-S--------SCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred eEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEe-C--------CCCCcCeEEEEecCCEEEEEeCCCCEEEEEE
Confidence 47889998666555 444567888888775432122111 0 12468899999966555555 5568999999
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee-ccCCCeEEEEEccCC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT-CHEGGARSISVFDND 2378 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~-gHs~~VtSLafsP~d 2378 (2548)
.+......... . --.+...| ++.|.+..+..+... ..+.|...++.. .....+. ..-...+.|++.+.+
T Consensus 113 ~dG~~~~~l~~----~-~l~~P~~I-avdp~~g~ly~tD~g-~~~~I~r~~~dG---~~~~~l~~~~~~~P~Glald~~~ 182 (619)
T 3s94_A 113 LDGSLRKVLFW----Q-ELDQPRAI-ALDPSSGFMYWTDWG-EVPKIERAGMDG---SSRFIIINSEIYWPNGLTLDYEE 182 (619)
T ss_dssp TTSCSCEEEEC----S-SCSCCCCE-EEETTTTEEEEEECS-SSCEEEEEETTS---CSCEEEECSSCSSEEEEEEETTT
T ss_pred CCCCCEEEEEe----C-CCCCCceE-EEecCCCeEEEeccC-CCCEEEEEECCC---CceEEEEeCCCCCCcEEEEEccC
Confidence 87543211110 0 11122233 466654444443311 245666666652 3222222 234567889998874
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeC
Q 000054 2379 LGSGSVSPLIVTGGKGGDVGIHDF 2402 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDL 2402 (2548)
+.+.++-...+.|...|+
T Consensus 183 ------~~LY~aD~~~~~I~~~~~ 200 (619)
T 3s94_A 183 ------QKLYWADAKLNFIHKSNL 200 (619)
T ss_dssp ------TEEEEEETTTCCEEEESS
T ss_pred ------CEEEEEeCCCCeEEEecC
Confidence 556666666778888885
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2548 | ||||
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 0.002 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-06 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 0.001 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 8e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 9e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 2e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-04 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 8e-04 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.001 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.002 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 0.001 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.002 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.002 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.002 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.004 |
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (117), Expect = 2e-06
Identities = 37/252 (14%), Positives = 64/252 (25%), Gaps = 20/252 (7%)
Query: 570 LMGHVGGIDCFIVKISQTEVDDIVCHYVCTIPFTGHGHYEDGPANIFSVPLPSCNDKTVM 629
L GH G + C TG + L N V
Sbjct: 51 LTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVT 110
Query: 630 YNKFMLLGVWLKGLESLSWEITFHSFDLSESCCGCIDDNNTVKCSM-----------CKF 678
+K + VW + + DD V S C+F
Sbjct: 111 CSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF 170
Query: 679 ETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVVCPNNLVPMQQKLVYDNDPCSKIPPY 738
T G K I + + + + + + + C +
Sbjct: 171 VRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACL-RVLEGHEELVRCIRFDNK 229
Query: 739 TMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAISLTDGGRKIATVSAAS 798
+ +G DG +++W + + LV H G V + +I + S
Sbjct: 230 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHD- 286
Query: 799 HSNAVSNVRIWE 810
+ IW+
Sbjct: 287 -----DTILIWD 293
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.7 bits (117), Expect = 2e-06
Identities = 45/347 (12%), Positives = 85/347 (24%), Gaps = 61/347 (17%)
Query: 484 SIEGHTGKILQVAVHPCVSEFELAVSLDSNGLLLFWSLST----------ISNCISDLPT 533
++ GH + +V HP F + VS + + W T +
Sbjct: 12 ALSGHRSPVTRVIFHPV---FSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 68
Query: 534 LMPSWKLCGKLRTRKSCSNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIV 593
++ ++ D + + IV S+ + +
Sbjct: 69 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128
Query: 594 CHYVCTIPFTGHGHYEDGPANIFSVPLP----SCNDKTVMYNKF--MLLGVWLKGLESLS 647
T GH E + ND+TV L+ +
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 188
Query: 648 WEITFHSFDLSESCCGCIDDNNTVKCSMCKFETTFCGKKYFIGVNPCSSQFP----EPHT 703
I++ S F + + I + S+ H
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLS-GSRDKTIKMWDVSTGMCLMTLVGHD 247
Query: 704 RNWVTSFAVVCPNNLVPMQQKLVYDNDPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSC 763
NWV + + D +LR+W +
Sbjct: 248 -NWVRGVLFHSGGKFI---------------------LSCADDKTLRVWDYK-------- 277
Query: 764 MPWELVGMLVAHQGPVSAISLTDGGRKIATVSAASHSNAVSNVRIWE 810
+ L AH+ V+++ + T S V++WE
Sbjct: 278 -NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVD------QTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.0 bits (115), Expect = 5e-06
Identities = 39/314 (12%), Positives = 74/314 (23%), Gaps = 63/314 (20%)
Query: 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVG------------------------GRSN 2307
+ ++ + F SA+ D T+ W E G S
Sbjct: 18 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASC 77
Query: 2308 VRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEG 2367
M L + + +++ NG ++V
Sbjct: 78 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK 137
Query: 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKT-KKHKH----------- 2415
+ + LI + V + ++H+H
Sbjct: 138 TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPES 197
Query: 2416 -----SDRGGSSINTCAHADAQTGSGSKPG------DQNGMLWYIPKAHLGSVTRISTVP 2464
S+ GS SGS+ GM H V +
Sbjct: 198 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS 257
Query: 2465 NTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVS 2524
L+ + D +++WD K + + + T L
Sbjct: 258 GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA---------------- 301
Query: 2525 RGFLSCGGDGSVKL 2538
++ D +VK+
Sbjct: 302 PYVVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.8 bits (99), Expect = 4e-04
Identities = 30/222 (13%), Positives = 59/222 (26%), Gaps = 29/222 (13%)
Query: 2278 QFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAA 2337
G SA+ D T+ W+++ + + G++IA+
Sbjct: 108 SIMPNGDHIVSASRDKTIKMWEVQT------GYCVKTFTGHREWVRMVRPNQDGTLIASC 161
Query: 2338 G--------HSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIV 2389
+ + + S + SG P ++
Sbjct: 162 SNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLL 221
Query: 2390 TGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTG---SGSKPGD----- 2441
+G + + + D T + G + + S +
Sbjct: 222 SGSRDKTIKMWDVS------TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 275
Query: 2442 -QNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWD 2482
+N AH VT + +TGS D VK+W+
Sbjct: 276 YKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 40.5 bits (93), Expect = 0.002
Identities = 22/153 (14%), Positives = 39/153 (25%), Gaps = 23/153 (15%)
Query: 2200 GWETQDDFEDYVDPPATVENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGV 2259
+ + E + S PF L GS + I +W+ T
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-- 243
Query: 2260 LPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSS 2319
+ + F G S A D T+ W + + ++
Sbjct: 244 --------VGHDNWVRGVLFHSGGKFILSCADDKTLRVW--------DYKNKRCMKTLNA 287
Query: 2320 HAMDVSYITSS--GSVIAAAGHSSNGINVVVWD 2350
H V+ + + V VW+
Sbjct: 288 HEHFVTSLDFHKTAPYVVTGSVDQ---TVKVWE 317
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.7 bits (114), Expect = 4e-06
Identities = 33/308 (10%), Positives = 72/308 (23%), Gaps = 28/308 (9%)
Query: 2235 LVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGT 2294
+ + T +Y G T Y + + G+ AS + G
Sbjct: 32 IQYCNGTSVYTVPVGSLTDTEIYTEHSHQ----------TTVAKTSPSGYYCASGDVHGN 81
Query: 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAP 2354
V W + S +V + +
Sbjct: 82 VRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGN 141
Query: 2355 PTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHK 2414
T ++ + + +V+ K +++ + +
Sbjct: 142 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG 201
Query: 2415 HSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSK 2474
T + G AH GSV ++ P+ + + S
Sbjct: 202 SLFASTGGDGTIVLYNGVDG---TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA 258
Query: 2475 DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGGDG 2534
D +K+W+ ++ G + I + +S +G
Sbjct: 259 DKTIKIWNVATLKVEKTIP---------------VGTRIEDQQLGIIWTKQALVSISANG 303
Query: 2535 SVKLIQLE 2542
+ + E
Sbjct: 304 FINFVNPE 311
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 46.7 bits (109), Expect = 3e-05
Identities = 26/144 (18%), Positives = 43/144 (29%), Gaps = 18/144 (12%)
Query: 2346 VVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYI 2405
+WD R + T HE +I F N TG + D R
Sbjct: 208 AKLWDV--REGMCRQTFTGHESDINAICFFPN-------GNAFATGSDDATCRLFDLRAD 258
Query: 2406 ATGKTKKHKHSDRGGSSINTCAHADAQT-GSGSKPGD------QNGMLWYIPKAHLGSVT 2458
T H + G +S+ + +G + + H V+
Sbjct: 259 QELMTYSHDNIICGITSV--SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS 316
Query: 2459 RISTVPNTSLFLTGSKDGDVKLWD 2482
+ + TGS D +K+W+
Sbjct: 317 CLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.3 bits (103), Expect = 1e-04
Identities = 44/326 (13%), Positives = 96/326 (29%), Gaps = 36/326 (11%)
Query: 484 SIEGHTGKILQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDLPTLMPSWKLCGK 543
++ GH KI + + L VS +G L+ W T +N + +P C
Sbjct: 50 TLRGHLAKIYAMHWGT---DSRLLVSASQDGKLIIWDSYT-TNKVHAIPLRSSWVMTCAY 105
Query: 544 LRTRKSCSNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVCHYVCTIPFT 603
+ + + + + +S D + T
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTT 165
Query: 604 GHGHYEDGPANIFSVPLPSCNDKTVMYNKFMLLGVWLKGLESLSWEITFHSFDLSESCCG 663
+ + + + ++ L V S + + + +D+ E C
Sbjct: 166 CALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV------SGACDASAKLWDVREGMCR 219
Query: 664 CIDDNNTVKCSMCKFETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVVCPNNLVPMQQ 723
+ + F G + G + + + + + +++ +
Sbjct: 220 QTFTGHESDINAICFFPN--GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI---T 274
Query: 724 KLVYDNDPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAIS 783
+ + + GY D + +W + + G+L H VS +
Sbjct: 275 SVSFSKSG------RLLLAGYDDFNCNVW---------DALKADRAGVLAGHDNRVSCLG 319
Query: 784 LTDGGRKIATVSAASHSNAVSNVRIW 809
+TD G +AT S S ++IW
Sbjct: 320 VTDDGMAVATGSWD------SFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.6 bits (96), Expect = 0.001
Identities = 41/285 (14%), Positives = 78/285 (27%), Gaps = 48/285 (16%)
Query: 2272 ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFS-SHAMDVSYITSS 2330
A I A+ + SA+ DG + W + + P+ S + ++A +Y+
Sbjct: 56 AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACG 115
Query: 2331 GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVT 2390
G + ++ V + + C I D
Sbjct: 116 GLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGD------------ 163
Query: 2391 GGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP 2450
++ + + + A S D + LW +
Sbjct: 164 ---------TTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 2451 --------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFL 2502
H + I PN + F TGS D +L+D +A Q + +S +
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIIC--- 271
Query: 2503 QPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545
G+T + G L+ D + +
Sbjct: 272 -------------GITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.3 bits (108), Expect = 4e-05
Identities = 51/350 (14%), Positives = 91/350 (26%), Gaps = 38/350 (10%)
Query: 2220 ISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYAL-------- 2271
+ RA S P+ PF L ++ K T Y +L +P +
Sbjct: 6 YNQRANHSKPIPPFLL--DLDSQSVPDALKKQ--TNDYYILYNPALPREIDVELHKSLDH 61
Query: 2272 -ASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSS 2330
+ + ++F + G A+ + T +++ G +S ++ S SS
Sbjct: 62 TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120
Query: 2331 GSVIAAAGHSSNGINVVV--------WDTLAPPTSSRASITCHEGGARSISVFDNDLGSG 2382
I + S +G + + + D
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180
Query: 2383 SVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRG-----GSSINTCAHADAQTGSGS 2437
V I G T G GS D++TG
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG--- 237
Query: 2438 KPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHE 2497
++ H SV + + ++GS D VKLW+ + A +
Sbjct: 238 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNS 297
Query: 2498 RHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545
+ + V + LS D V +
Sbjct: 298 GTCEVTYIGH------KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 341
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.6 bits (101), Expect = 2e-04
Identities = 48/331 (14%), Positives = 81/331 (24%), Gaps = 42/331 (12%)
Query: 2234 FLVGSSNTHIYLWEFGKDKATATYGVLPAANVPP--------PYALASISALQFDHYGHR 2285
+L N ++ A AAN P P + I ++ F G
Sbjct: 76 YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF 135
Query: 2286 FASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGIN 2345
A+ A D + W + Y S
Sbjct: 136 LATGAEDRLIRIWD---------IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 186
Query: 2346 VVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYI 2405
V +WD S SI + +GS+ + +
Sbjct: 187 VRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE 246
Query: 2406 ATGKTKKHKHSDRG------------GSSINTCAHADAQTGSGSKPGDQNGMLWYI--PK 2451
T HK S GS + + Q +
Sbjct: 247 NESGTG-HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305
Query: 2452 AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGG 2511
H V ++T N L+GSKD V WD K+ + + ++
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG---- 361
Query: 2512 VVRAGVTDIQVVSRGFLSCGGDGSVKLIQLE 2542
+ + F + GD ++ + +
Sbjct: 362 ------SSLGPEYNVFATGSGDCKARIWKYK 386
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.6 bits (103), Expect = 8e-05
Identities = 32/328 (9%), Positives = 80/328 (24%), Gaps = 49/328 (14%)
Query: 482 ILSIEGHTGKILQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDLPTLMPSWKLC 541
+ +I GH I + V+P +S S D G ++ WS S++
Sbjct: 6 LKTISGHNKGITALTVNPLIS-----GSYD--GRIMEWSSSSM----------------- 41
Query: 542 GKLRTRKSCSNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVCHYVCTIP 601
+ + SL + + + SQ +V +
Sbjct: 42 ----HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVL 97
Query: 602 FTGHGHYEDGPANIFSVPLPSCNDKTVMYNKFMLLGVWLKGLESLSWEITFHSFDLSESC 661
+ N + + ++S
Sbjct: 98 TNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL 157
Query: 662 CGCIDDNNTVKCSMCKFETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVVCPNNLVPM 721
+ + G + +R + + +
Sbjct: 158 KTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAE 217
Query: 722 QQKLVYDNDPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSA 781
+ + + +ATG D ++ ++ + +++ L AH+ V+
Sbjct: 218 KGANEEEIEED------LVATGSLDTNIFIYSVKRPM--------KIIKALNAHKDGVNN 263
Query: 782 ISLTDGGRKIATVSAASHSNAVSNVRIW 809
+ + + A + ++ W
Sbjct: 264 LLWETPST-LVSSGAD------ACIKRW 284
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.8 bits (104), Expect = 9e-05
Identities = 45/354 (12%), Positives = 95/354 (26%), Gaps = 47/354 (13%)
Query: 2232 PFFLVGSSNTHIYLWEF--GKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFAS 2288
F + S + ++ +W+ ++ + + + + A++ D + A+
Sbjct: 25 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 84
Query: 2289 AALDGTVCTWQLEVGGRSNVRPMESCLCFSSH---------AMDVSYITSSGSVIAAAGH 2339
+ G + +++ + E S S + A
Sbjct: 85 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDV 144
Query: 2340 SSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLG---SGSVSP--LIVTGGKG 2394
S + + ++ S +S LI TG
Sbjct: 145 KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNN 204
Query: 2395 GDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWY------ 2448
G V I + + + +HS S+ Q + D N
Sbjct: 205 GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE 264
Query: 2449 -------------------IPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLV 2489
AH V +S + + DG ++ WD K + +
Sbjct: 265 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI 324
Query: 2490 Y----HWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGGDGSVKLI 2539
H + L G + GV D++ + +G+ S G + +
Sbjct: 325 TTLNMHCDDIEIEEDILAVDEHG-DSLAEPGVFDVKFLKKGWRSGMGADLNESL 377
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.1 bits (102), Expect = 2e-04
Identities = 14/96 (14%), Positives = 31/96 (32%), Gaps = 7/96 (7%)
Query: 2449 IPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTF-LQPSSR 2507
KAH + +S + ++ S DG +K+WD K K +
Sbjct: 9 AGKAHDADIFSVSACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 2508 GFGGVVRAGVTDIQVVSRGFLSCGGDGSVKLIQLED 2543
+ ++ +V+ + G + ++
Sbjct: 67 DVLQAIERDAFELCLVA----TTSFSGDLLFYRITR 98
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (103), Expect = 1e-04
Identities = 38/360 (10%), Positives = 82/360 (22%), Gaps = 42/360 (11%)
Query: 453 LHAQRSGDVEDVS-SDKSSTGQILSCSASRILSIEGHTGKILQVAVHPCVSEFELAVSLD 511
H G ++ V + G + A +I ++ H + V + +
Sbjct: 15 FHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRH--VYTG-- 69
Query: 512 SNGLLLFWSLSTISNCISDLPTLMPSWKLCGKLRTRKSCSNY-TSLRWAPSLLDEDMVLL 570
G + W +S P K + NY S + P L+
Sbjct: 70 GKGCVKVWDISH------------PGNKSPVSQLDCLNRDNYIRSCKLLPD----GCTLI 113
Query: 571 MGHVGGIDCFIVKISQTEVDDIVCHYVCTIPFTGHGHYEDGPANIFSVPLPSCNDKTVMY 630
+G + T + +
Sbjct: 114 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ 173
Query: 631 NKFMLLGVWLKGLESLSWEITFHSFDLSESCCGCIDDNNTVKCSMCKFETTFCGKKYFIG 690
+ +I+ L + ++ + F + + +G
Sbjct: 174 TLVR--QFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLG 231
Query: 691 VNPCSSQFPEPHTRNWVTSFAVVCPNNLVPMQQKLVYDNDPCSKIPPYTMATGYSDGSLR 750
P + V V P+ + + + + + D L
Sbjct: 232 YCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKW-FVSTGKDNLLN 290
Query: 751 LWRSELGGSSTSCMPWELVGMLVAHQGPVSAISLTDGGRKIATVSAASHSNAVSNVRIWE 810
WR+ G + V + ++ + I T S ++E
Sbjct: 291 AWRTPYG---------ASIFQS-KESSSVLSCDISVDDKYIVTGSGDKK------ATVYE 334
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.8 bits (96), Expect = 8e-04
Identities = 39/335 (11%), Positives = 75/335 (22%), Gaps = 29/335 (8%)
Query: 2214 PATVENISTRAFSSHPLRPFFLVGSSN-THIYLWEFGKDKATATYGVLPAANVPPPYALA 2272
P+T N +T S P + + G K +
Sbjct: 13 PSTQRNFTT-HLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSV------ 65
Query: 2273 SISALQF--DHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSS 2330
++ ++F S G V W SN + F A +S I+
Sbjct: 66 -VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD 124
Query: 2331 GSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVT 2390
N V+ + S + + S +V
Sbjct: 125 FEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSV 184
Query: 2391 GGKGGDVGIHDFRYIATGKTKKHKHS---DRGGSSINTCAHADAQTGSGSKPGDQNGMLW 2447
G K +D + +
Sbjct: 185 VFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI 244
Query: 2448 YIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSR 2507
+ + + ++ F T D +++WD ++ V W
Sbjct: 245 EDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKW--------------T 290
Query: 2508 GFGGVVRAGVTDIQVVSRGFL-SCGGDGSVKLIQL 2541
+ + G + S DG++ +L
Sbjct: 291 LDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 41.1 bits (94), Expect = 0.001
Identities = 27/325 (8%), Positives = 60/325 (18%), Gaps = 37/325 (11%)
Query: 485 IEGHTGKILQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDLPTLMPSWKLCGKL 544
GH I ++ S D+ G + W +ST P + +
Sbjct: 8 RYGHNKAITALSSSADGK---TLFSADAEGHINSWDIST-GISNRVFPDVHATMITG--- 60
Query: 545 RTRKSCSNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQTEVDDIVCHYVCTIPFTG 604
+ L +V + VD
Sbjct: 61 -----------------IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPL 103
Query: 605 HGHYEDGPANIFSVPLPSCNDKTVMYNKFMLLGVWLKGLESLSWEITFHSFDLSESCCGC 664
+ + + + + + +
Sbjct: 104 GLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVY 163
Query: 665 IDDNNTVKCSMCKFETTFCGKKYFIGVNPCSSQFPEPHTRNWVTSFAVVCPNNLVPMQQK 724
+V F + + +
Sbjct: 164 KLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH 223
Query: 725 LVYDNDPCSKIPPYTMATGYSDGSLRLWRSELGGSSTSCMPWELVGMLVAHQGPVSAISL 784
+ATG D S+ +W ++ V+++
Sbjct: 224 TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD------HPIIIKGAHAMSSVNSVIW 277
Query: 785 TDGGRKIATVSAASHSNAVSNVRIW 809
+ I + SN++ W
Sbjct: 278 LNETT-IVSAGQD------SNIKFW 295
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.7 bits (93), Expect = 0.002
Identities = 8/54 (14%), Positives = 20/54 (37%)
Query: 2444 GMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHE 2497
G + + H ++T +S+ + + +G + WD + +H
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHA 55
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (94), Expect = 0.001
Identities = 46/348 (13%), Positives = 95/348 (27%), Gaps = 30/348 (8%)
Query: 476 SCSASRILSIEGHTGKILQVAVHPCVSEFELAVSLDSNGLLLFWSLSTISNCISDL---- 531
+ ++L +GH ++ + C VS + L WS T C+ L
Sbjct: 5 ELKSPKVL--KGHDDHVI-TCLQFC---GNRIVSGSDDNTLKVWSAVT-GKCLRTLVGHT 57
Query: 532 -----PTLMPSWKLCGKLRTRKSCSNYTSLRWAPSLLDEDMVLLMGHVGGIDCFIVKISQ 586
+ + + G N + +L + H+
Sbjct: 58 GGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117
Query: 587 TEVDDIVCHYVCTIPFTGHGHYEDGPANIFSVPLPSCNDKTVMYNKFMLLGVWLKGLESL 646
T + C GH + D V L L+
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD-PETETCLHTLQGH 176
Query: 647 SWEITFHSFDLSESCCGCIDDNNTVKCSMCKFE----TTFCGKKYFIGVNPCSSQFPEPH 702
+ + FD G +D +++ + T + G+ + +
Sbjct: 177 TNRVYSLQFDGIHVVSGSLD--TSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGN 234
Query: 703 TRNWVTSFAVVCPNNLVPMQQKLVYDNDPCSKIP-PYTMATGYSDGSLRLWRSELGGSST 761
+ V + + L +Q + + + T DG+++LW + G
Sbjct: 235 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 294
Query: 762 SCMPWELVGMLVAHQGPVSAISLTDGGRKIATVSAASHSNAVSNVRIW 809
+ + E G G V I ++ A S + + + +
Sbjct: 295 NLVTLESGG----SGGVVWRIRASNTKLVCAVGS--RNGTEETKLLVL 336
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 41.0 bits (94), Expect = 0.002
Identities = 16/212 (7%), Positives = 43/212 (20%), Gaps = 14/212 (6%)
Query: 2277 LQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAA 2336
H + + + +E S + D + +
Sbjct: 143 AYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYY-----LS 197
Query: 2337 AGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGD 2396
+ VV + S I G + S +
Sbjct: 198 YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPR--SMTSEAGEYDLNDMYKR 255
Query: 2397 VGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYI----PKA 2452
+ G + + + H + P + + +
Sbjct: 256 SSPINVDP---GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE 312
Query: 2453 HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK 2484
++T + + + DG + + +
Sbjct: 313 VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLE 344
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 40.9 bits (94), Expect = 0.002
Identities = 18/282 (6%), Positives = 64/282 (22%), Gaps = 18/282 (6%)
Query: 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDH 2281
+ + + G ++ +++ TA + + P
Sbjct: 59 SFIAHASTVFSRIARGERTDYVEVFDPVTLLPTAD---IELPDAPRFLVGTYPWMTSLTP 115
Query: 2282 YGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAM-DVSYITSSGSVIAAAGHS 2340
G +++ G++ R ++ C+ ++ A
Sbjct: 116 DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAF 175
Query: 2341 SNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIH 2400
+ T I ++ + G + + ++ G +
Sbjct: 176 GTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYT-GKIHQIDLSSGDAKFLPAV 234
Query: 2401 DFRYIATGKTKKHKHSDR--GGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVT 2458
+ A + + + + + + +
Sbjct: 235 EALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA 294
Query: 2459 RISTVP-----------NTSLFLTGSKDGDVKLWDAKAAQLV 2489
+ L+ + D + + DA++ + +
Sbjct: 295 KFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 336
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.6 bits (93), Expect = 0.002
Identities = 41/375 (10%), Positives = 93/375 (24%), Gaps = 59/375 (15%)
Query: 2217 VENISTRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISA 2276
VE IS A++ R + +N ++++E +K + L N ++
Sbjct: 7 VEPISCHAWN--KDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHN-------GQVTG 56
Query: 2277 LQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAA 2336
+ + +R + D W + + + + A
Sbjct: 57 VDWAPDSNRIVTCGTDRNAYVWT-----LKGRTWKPTLVILRINRAARCVRWAPNEKKFA 111
Query: 2337 AGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL------GSGSVSPLIVT 2390
G S I++ ++ + S+ N +
Sbjct: 112 VGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY 171
Query: 2391 GGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP 2450
+ + + S ++ + + D L
Sbjct: 172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 231
Query: 2451 KAHL--------GSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQ----LVYHWSKLHER 2498
K + ++ + +SL G D L+ +A +
Sbjct: 232 KKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQS 290
Query: 2499 HTFLQPSSRGFGGVVRAG-------------------VTDIQVVSRG------FLSCGGD 2533
+ F + + V+ I V+S G F + G D
Sbjct: 291 SQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMD 350
Query: 2534 GSVKLIQLEDYQHRL 2548
G + + + + L
Sbjct: 351 GGMSIWDVRSLESAL 365
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.4 bits (90), Expect = 0.004
Identities = 7/67 (10%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 2273 SISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGS 2332
IS ++ + DG++ ++ ++ ++ + L + + ++I ++
Sbjct: 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN--VDLLQSLRYKHPLLCCNFIDNTDL 70
Query: 2333 VIAAAGH 2339
I
Sbjct: 71 QIYVGTV 77
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2548 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.96 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.96 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.96 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.96 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.96 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.94 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.93 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.93 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.92 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.92 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.92 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.9 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.9 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.9 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.9 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.89 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.88 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.87 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.87 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.85 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.85 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.85 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.8 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.8 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.8 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.79 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.79 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.77 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.73 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.7 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.69 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.68 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.67 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.66 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.58 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.57 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.52 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.5 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.48 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.47 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.37 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.37 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.26 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.22 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.16 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.12 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.03 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.72 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.57 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.28 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.14 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.97 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.89 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.87 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.82 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 97.8 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.75 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.69 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.59 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.58 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.31 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.09 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.03 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 96.91 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 96.83 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 96.81 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 96.75 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.41 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.29 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 95.63 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 94.83 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 94.09 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 92.27 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 87.44 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 82.22 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 82.13 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 81.56 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=4.6e-28 Score=277.88 Aligned_cols=272 Identities=19% Similarity=0.250 Sum_probs=220.9
Q ss_pred CCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC
Q 000054 2214 PATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL 2291 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~ 2291 (2548)
+..+.+|. |.+++|+|++++|+||+.||+|+|||+.+++.+.++.. |.+.|.+++|+|++.++++++.
T Consensus 10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~----------h~~~V~~~~~~~~~~~~~~~~~ 79 (317)
T d1vyhc1 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG----------HTDSVQDISFDHSGKLLASCSA 79 (317)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC----------CSSCEEEEEECTTSSEEEEEET
T ss_pred cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeC----------CCCcEEEEeeeccccccccccc
Confidence 44567776 89999999999999999999999999999998888743 5589999999999999999999
Q ss_pred CCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe
Q 000054 2292 DGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA 2369 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V 2369 (2548)
++.+.+|+....+... .+.+|...+. .++++++.+++++ .|+.+++||++. ++.+..+.+|...+
T Consensus 80 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~--~~~~~~~~~~~~~~ 146 (317)
T d1vyhc1 80 DMTIKLWDFQGFECIR--------TMHGHDHNVSSVSIMPNGDHIVSAS---RDKTIKMWEVQT--GYCVKTFTGHREWV 146 (317)
T ss_dssp TSCCCEEETTSSCEEE--------CCCCCSSCEEEEEECSSSSEEEEEE---TTSEEEEEETTT--CCEEEEEECCSSCE
T ss_pred cccccccccccccccc--------ccccccccceeeeccCCCceEEeec---cCcceeEeeccc--ceeeeEEccCCCcc
Confidence 9999999987664322 2455666555 4899999999986 899999999986 67788899999999
Q ss_pred EEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCC-----------------
Q 000054 2370 RSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQ----------------- 2432 (2548)
Q Consensus 2370 tSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSp----------------- 2432 (2548)
.+++++++ +.+|++|+.||.|++||+ .+++....+..... ....+.+++
T Consensus 147 ~~~~~~~~-------~~~l~~~~~d~~v~~~~~---~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~ 212 (317)
T d1vyhc1 147 RMVRPNQD-------GTLIASCSNDQTVRVWVV---ATKECKAELREHRH----VVECISWAPESSYSSISEATGSETKK 212 (317)
T ss_dssp EEEEECTT-------SSEEEEEETTSCEEEEET---TTCCEEEEECCCSS----CEEEEEECCSCGGGGGGGCCSCC---
T ss_pred eeeecccC-------CCEEEEEeCCCeEEEEee---ccceeeEEEecCCC----CceEEEEeeccccceeeccccceeee
Confidence 99999998 789999999999999995 44555554421110 111112222
Q ss_pred ---CCCC--ccCCCCCceEEEc--------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccccccc
Q 000054 2433 ---TGSG--SKPGDQNGMLWYI--------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERH 2499 (2548)
Q Consensus 2433 ---dGk~--v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~h 2499 (2548)
++.. ++..|+.+++|+. +.+|...|.+++|+|++++|++|+.||.|++||+++++++.++
T Consensus 213 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------- 285 (317)
T d1vyhc1 213 SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL------- 285 (317)
T ss_dssp ----CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE-------
T ss_pred eccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEE-------
Confidence 2222 4566788889984 3579999999999999999999999999999999999988877
Q ss_pred ccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEE
Q 000054 2500 TFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2500 sfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWD 2540 (2548)
.+|.+ .|++++|+|++ |+|||.||+|+|||
T Consensus 286 -------~~h~~----~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 286 -------NAHEH----FVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp -------ECCSS----CEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred -------cCCCC----CEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 57764 45778999999 99999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=2.5e-28 Score=292.79 Aligned_cols=269 Identities=14% Similarity=0.179 Sum_probs=218.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|.+++|+|+|++|++|+ ||.|+|||+.++.....+... ....|.+.|.+++|+|++++|++|+.||+|++||+.
T Consensus 54 V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~-----~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~ 127 (337)
T d1gxra_ 54 VCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQL-----DCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp CCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEE-----ECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred EEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEe-----eecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence 68999999999999987 899999999875433222111 123466899999999999999999999999999987
Q ss_pred CCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
..... ....+..|...+. +++|++.++++++ .|+.|++||+.. .+......+|...|++++|+++
T Consensus 128 ~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~d~~i~~~~~~~--~~~~~~~~~~~~~v~~l~~s~~-- 194 (337)
T d1gxra_ 128 APTPR------IKAELTSSAPACYALAISPDSKVCFSCC---SDGNIAVWDLHN--QTLVRQFQGHTDGASCIDISND-- 194 (337)
T ss_dssp CC--E------EEEEEECSSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTT--
T ss_pred ccccc------cccccccccccccccccccccccccccc---cccccccccccc--cccccccccccccccccccccc--
Confidence 54321 1233567777765 4899999999986 899999999986 5677788899999999999988
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEcc-------
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIP------- 2450 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~------- 2450 (2548)
+..+++|+.||.|++||+ .+++.+..+.. ......+.++|++.. ++..++.+++|++.
T Consensus 195 -----~~~~~~~~~d~~v~i~d~---~~~~~~~~~~~-----~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 261 (337)
T d1gxra_ 195 -----GTKLWTGGLDNTVRSWDL---REGRQLQQHDF-----TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261 (337)
T ss_dssp -----SSEEEEEETTSEEEEEET---TTTEEEEEEEC-----SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE
T ss_pred -----cccccccccccccccccc---ccceeeccccc-----ccceEEEEEcccccccceeccccccccccccccccccc
Confidence 789999999999999994 45666665521 123456788999887 56788899999853
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EE
Q 000054 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FL 2528 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--La 2528 (2548)
..|...|++++|+|++++|++|+.||.|++||+.+++.+..+ +|.+ .|.+++|+|++ |+
T Consensus 262 ~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~---------------~~~~----~v~~~~~s~d~~~l~ 322 (337)
T d1gxra_ 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS---------------KESS----SVLSCDISVDDKYIV 322 (337)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE---------------ECSS----CEEEEEECTTSCEEE
T ss_pred cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc---------------cCCC----CEEEEEEeCCCCEEE
Confidence 468999999999999999999999999999999999998765 2333 35778999999 89
Q ss_pred EEECCCcEEEEEC
Q 000054 2529 SCGGDGSVKLIQL 2541 (2548)
Q Consensus 2529 SGS~DGtIrIWDL 2541 (2548)
+||.||+|+|||+
T Consensus 323 t~s~D~~I~vWdl 335 (337)
T d1gxra_ 323 TGSGDKKATVYEV 335 (337)
T ss_dssp EEETTSCEEEEEE
T ss_pred EEeCCCeEEEEEE
Confidence 9999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.96 E-value=1.4e-27 Score=285.93 Aligned_cols=272 Identities=18% Similarity=0.142 Sum_probs=219.5
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
.+++++|+|+.|+.++ ++.|.+||+.++.....+.. |.+.|++++|+|+|++|++|+.||+|++||+.+
T Consensus 21 ~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~----------H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~ 89 (311)
T d1nr0a1 21 VVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTE----------HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQ 89 (311)
T ss_dssp CCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECC----------CSSCEEEEEECTTSSEEEEEETTSEEEEEESSS
T ss_pred EEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcC----------CCCCEEEEEEeCCCCeEeccccCceEeeeeeec
Confidence 5678889999999875 56799999999888777642 568999999999999999999999999999987
Q ss_pred CcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCC
Q 000054 2303 GGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLG 2380 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg 2380 (2548)
+.... ...+.+|...|.+ |+|+++++++++.. .++.+++|+..+ .+....+.+|.+.|++++|+|++
T Consensus 90 ~~~~~------~~~~~~~~~~v~~v~~s~d~~~l~~~~~~-~~~~~~v~~~~~--~~~~~~l~~h~~~v~~v~~~~~~-- 158 (311)
T d1nr0a1 90 TTHIL------KTTIPVFSGPVKDISWDSESKRIAAVGEG-RERFGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSR-- 158 (311)
T ss_dssp TTCCE------EEEEECSSSCEEEEEECTTSCEEEEEECC-SSCSEEEEETTT--CCBCBCCCCCSSCEEEEEECSSS--
T ss_pred ccccc------ccccccccCcccccccccccccccccccc-cccccccccccc--ccccccccccccccccccccccc--
Confidence 65321 1236678888864 89999999998732 467799999986 56778889999999999999983
Q ss_pred CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEcc--------
Q 000054 2381 SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIP-------- 2450 (2548)
Q Consensus 2381 ~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~-------- 2450 (2548)
...+++|+.||.|++||+ .+++....... + ......+.++|++++ +++.|+.+++|+..
T Consensus 159 ----~~~l~sgs~d~~i~i~d~---~~~~~~~~~~~---~-~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~ 227 (311)
T d1nr0a1 159 ----PFRIISGSDDNTVAIFEG---PPFKFKSTFGE---H-TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVF 227 (311)
T ss_dssp ----SCEEEEEETTSCEEEEET---TTBEEEEEECC---C-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEC
T ss_pred ----eeeecccccccccccccc---ccccccccccc---c-cccccccccCccccccccccccccccccccccccccccc
Confidence 446899999999999995 45666555421 1 223456789999998 56678999999842
Q ss_pred -------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEc
Q 000054 2451 -------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVV 2523 (2548)
Q Consensus 2451 -------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafS 2523 (2548)
.+|.+.|++++|+|++++|++|+.||+|+|||+++++++++++ .|.... ..+.++.|+
T Consensus 228 ~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~--------------~~~~~~-~~~~~~~~~ 292 (311)
T d1nr0a1 228 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP--------------VGTRIE-DQQLGIIWT 292 (311)
T ss_dssp BCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE--------------CCSSGG-GCEEEEEEC
T ss_pred cccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEE--------------CCCCcc-ceEEEEEec
Confidence 3689999999999999999999999999999999999998883 222111 234566788
Q ss_pred CCeEEEEECCCcEEEEECC
Q 000054 2524 SRGFLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2524 PdGLaSGS~DGtIrIWDL~ 2542 (2548)
++.|++++.||.|++||++
T Consensus 293 ~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 293 KQALVSISANGFINFVNPE 311 (311)
T ss_dssp SSCEEEEETTCCEEEEETT
T ss_pred CCEEEEEECCCEEEEEeCC
Confidence 7779999999999999975
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=9.4e-28 Score=288.91 Aligned_cols=283 Identities=20% Similarity=0.285 Sum_probs=218.1
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCC--------CCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAAN--------VPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs--------~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
|.|++|+|+|++||+|+ |++|+|||+.+++.+..+....... .....|...|++++|+|++++|++|+.||
T Consensus 65 V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg 143 (388)
T d1erja_ 65 VCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR 143 (388)
T ss_dssp CCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccc
Confidence 68999999999999986 8999999999998887765432111 12345678899999999999999999999
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
+|++||...++.. ....+|...|.+ +++++..+++++ .++.|++||.+. ....... .+.....+
T Consensus 144 ~v~i~~~~~~~~~--------~~~~~h~~~v~~~~~~~~~~~~~~~~---~~~~i~~~d~~~--~~~~~~~-~~~~~~~~ 209 (388)
T d1erja_ 144 LIRIWDIENRKIV--------MILQGHEQDIYSLDYFPSGDKLVSGS---GDRTVRIWDLRT--GQCSLTL-SIEDGVTT 209 (388)
T ss_dssp CEEEEETTTTEEE--------EEECCCSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTT--TEEEEEE-ECSSCEEE
T ss_pred ccccccccccccc--------cccccccccccccccccccccccccc---cceeeeeeeccc--ccccccc-cccccccc
Confidence 9999999877533 236778888874 788999999986 899999999975 3344444 44556667
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCC---CCCCccccccccCCCCCC--ccCCCCCceE
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDR---GGSSINTCAHADAQTGSG--SKPGDQNGML 2446 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~---~~s~~~~~~vafSpdGk~--v~s~D~sv~I 2446 (2548)
+.+++.+ +.+|++|+.||.|++|| ..++.....+.... .........+.+++++.. +++.|+.+++
T Consensus 210 ~~~~~~~------~~~l~~~~~d~~i~i~~---~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~i 280 (388)
T d1erja_ 210 VAVSPGD------GKYIAAGSLDRAVRVWD---SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 280 (388)
T ss_dssp EEECSTT------CCEEEEEETTSCEEEEE---TTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred ccccCCC------CCeEEEEcCCCeEEEee---cccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEE
Confidence 7777765 78999999999999999 44566655542111 111233456789999987 5677889999
Q ss_pred EEcc--------------------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcc
Q 000054 2447 WYIP--------------------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSS 2506 (2548)
Q Consensus 2447 wdi~--------------------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl 2506 (2548)
|++. ..|...|.+++|+|++++|++|+.||.|++||+++++++.++
T Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l-------------- 346 (388)
T d1erja_ 281 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML-------------- 346 (388)
T ss_dssp EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEE--------------
T ss_pred EeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE--------------
Confidence 9852 257889999999999999999999999999999999999877
Q ss_pred cCCCCceeecE--EEEEEcCCe--EEEEECCCcEEEEECC
Q 000054 2507 RGFGGVVRAGV--TDIQVVSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2507 ~GH~~~V~a~V--tsLafSPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
++|.+.|.+.. .+++|+|++ |+|||.||+|+||+++
T Consensus 347 ~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 347 QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp ECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred eCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 67876654321 122367788 8999999999999984
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.96 E-value=4.6e-27 Score=274.83 Aligned_cols=250 Identities=17% Similarity=0.242 Sum_probs=201.2
Q ss_pred CCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC
Q 000054 2214 PATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL 2291 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~ 2291 (2548)
.+++.||. |.+++|+|++++||||+.||+|+|||+.+++.+..+.. |.+.|.+++|+|+++++++|+.
T Consensus 48 ~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~----------~~~~v~~v~~~~~~~~l~~~~~ 117 (340)
T d1tbga_ 48 RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL----------RSSWVMTCAYAPSGNYVACGGL 117 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEEC----------SCSCEEEEEECTTSSEEEEEET
T ss_pred eEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEec----------ccccEEeeEeeccceeeeeecc
Confidence 45677776 89999999999999999999999999999998888753 4588999999999999999999
Q ss_pred CCcEEEEEcCCCcccccc--c----C-------------------------------ccceeccCCcccEE--EEcCCCC
Q 000054 2292 DGTVCTWQLEVGGRSNVR--P----M-------------------------------ESCLCFSSHAMDVS--YITSSGS 2332 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~--p----~-------------------------------~s~~t~~gH~~~V~--afSpdGs 2332 (2548)
|+.+++|+.......... . . ........+...+. .+.+.+.
T Consensus 118 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (340)
T d1tbga_ 118 DNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197 (340)
T ss_dssp TCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSS
T ss_pred cceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccc
Confidence 999999997654211000 0 0 00000111222222 2567788
Q ss_pred EEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceee
Q 000054 2333 VIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKK 2412 (2548)
Q Consensus 2333 lLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~ 2412 (2548)
++++++ .|+.|++||++. .+++..+.+|.+.|++++|+|+ +.+|++|+.||.|++||++ ....+.
T Consensus 198 ~~~~~~---~d~~v~i~d~~~--~~~~~~~~~h~~~i~~v~~~p~-------~~~l~s~s~d~~i~~~~~~---~~~~~~ 262 (340)
T d1tbga_ 198 LFVSGA---CDASAKLWDVRE--GMCRQTFTGHESDINAICFFPN-------GNAFATGSDDATCRLFDLR---ADQELM 262 (340)
T ss_dssp EEEEEE---TTTEEEEEETTT--TEEEEEECCCSSCEEEEEECTT-------SSEEEEEETTSCEEEEETT---TTEEEE
T ss_pred eeEEee---cCceEEEEECCC--CcEEEEEeCCCCCeEEEEECCC-------CCEEEEEeCCCeEEEEeec---cccccc
Confidence 888886 899999999986 6788899999999999999998 7899999999999999954 344433
Q ss_pred eecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2413 HKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2413 tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
.+. ...|...|.+++|+|++++|++|+.||.|++||+.+++++.++
T Consensus 263 ~~~----------------------------------~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~ 308 (340)
T d1tbga_ 263 TYS----------------------------------HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308 (340)
T ss_dssp EEC----------------------------------CTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred ccc----------------------------------cccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEE
Confidence 320 1446778999999999999999999999999999999999877
Q ss_pred cccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEE
Q 000054 2493 SKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2493 ~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWD 2540 (2548)
.+|.+. |++++|+|++ |+|||.||+|++||
T Consensus 309 --------------~~H~~~----V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 309 --------------AGHDNR----VSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp --------------CCCSSC----EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred --------------cCCCCC----EEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 678754 5778999999 99999999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.94 E-value=2.7e-25 Score=259.05 Aligned_cols=274 Identities=12% Similarity=0.163 Sum_probs=200.6
Q ss_pred ccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC
Q 000054 2216 TVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG 2293 (2548)
Q Consensus 2216 tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG 2293 (2548)
.+.||. |.+++|+|+|++|++|+.||+|++||+.+++....+. ..|.+.|++++|+|+++ +++++.|+
T Consensus 7 ~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~---------~~h~~~v~~v~~~~~g~-~~~~~~d~ 76 (299)
T d1nr0a2 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP---------DVHATMITGIKTTSKGD-LFTVSWDD 76 (299)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS---------CSCSSCEEEEEECTTSC-EEEEETTT
T ss_pred EcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc---------CCCCCcEEEEEeeccce-eeccccee
Confidence 445555 7999999999999999999999999999988776642 23668999999999987 56777899
Q ss_pred cEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2294 TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2294 tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
.+++|+.......... .....+...+. +++++++++++++ ++.+++|+... .... .....+.+
T Consensus 77 ~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~s~~g~~~~~~~----~~~i~~~~~~~----~~~~--~~~~~~~~ 141 (299)
T d1nr0a2 77 HLKVVPAGGSGVDSSK-----AVANKLSSQPLGLAVSADGDIAVAAC----YKHIAIYSHGK----LTEV--PISYNSSC 141 (299)
T ss_dssp EEEEECSSSSSSCTTS-----CCEEECSSCEEEEEECTTSSCEEEEE----SSEEEEEETTE----EEEE--ECSSCEEE
T ss_pred eEEEeccCCccccccc-----cccccccccccccccccccccccccc----ccccccccccc----cccc--cccccccc
Confidence 9999998754321111 11223333443 4889999888764 78999999642 2222 23456889
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI 2449 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi 2449 (2548)
++|+|+ +.++++|+.||.|++||++ +++....... . .......++++|++.+ +++.++.+++|+.
T Consensus 142 ~~~s~~-------~~~l~~g~~dg~i~~~d~~---~~~~~~~~~~-~--~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~ 208 (299)
T d1nr0a2 142 VALSND-------KQFVAVGGQDSKVHVYKLS---GASVSEVKTI-V--HPAEITSVAFSNNGAFLVATDQSRKVIPYSV 208 (299)
T ss_dssp EEECTT-------SCEEEEEETTSEEEEEEEE---TTEEEEEEEE-E--CSSCEEEEEECTTSSEEEEEETTSCEEEEEG
T ss_pred cccccc-------ccccccccccccccccccc---cccccccccc-c--ccccccccccccccccccccccccccccccc
Confidence 999998 7899999999999999954 3433222100 0 1123456789999887 5677889999984
Q ss_pred -----------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEE
Q 000054 2450 -----------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVT 2518 (2548)
Q Consensus 2450 -----------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vt 2518 (2548)
..+|...|++++|+|++++|++|+.||.|++||+++++....+. ..+|.. ..|.
T Consensus 209 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~------------~~~~~~---~~v~ 273 (299)
T d1nr0a2 209 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII------------KGAHAM---SSVN 273 (299)
T ss_dssp GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE------------TTSSTT---SCEE
T ss_pred cccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEE------------ecCCCC---CcEE
Confidence 24688999999999999999999999999999998765432221 122322 2345
Q ss_pred EEEEcCCe-EEEEECCCcEEEEECC
Q 000054 2519 DIQVVSRG-FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2519 sLafSPdG-LaSGS~DGtIrIWDL~ 2542 (2548)
.+.+.+++ |+|||.||+|++||++
T Consensus 274 ~~~~~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 274 SVIWLNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EEEEEETTEEEEEETTSCEEEEECC
T ss_pred EEEECCCCEEEEEeCCCEEEEEecc
Confidence 55666555 9999999999999985
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=6.7e-25 Score=266.95 Aligned_cols=259 Identities=13% Similarity=0.069 Sum_probs=197.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|.|++|+|+|++||+|+.||.|+|||..+++.... ..+. +|.+.|++++|+|++++|++|+.||+|++||++
T Consensus 10 It~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~-~~l~-------gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~ 81 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQV-HELK-------EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 81 (371)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEE-EEEE-------CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEE-EEec-------CCCCCEEEEEECCCCCEEEEEECCCeEEEEeec
Confidence 58999999999999999999999999987763322 1222 256999999999999999999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCC--cceeeeccCCCeEEEEEccC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTS--SRASITCHEGGARSISVFDN 2377 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k--~v~sl~gHs~~VtSLafsP~ 2377 (2548)
++.... ...+.+|...|.+ |+|+++.+++++ .|++|++|++...... ......+|.+.|.+++|+|+
T Consensus 82 ~~~~~~------~~~~~~~~~~v~~i~~~p~~~~l~~~s---~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~ 152 (371)
T d1k8kc_ 82 GRTWKP------TLVILRINRAARCVRWAPNEKKFAVGS---GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN 152 (371)
T ss_dssp TTEEEE------EEECCCCSSCEEEEEECTTSSEEEEEE---TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred cccccc------ccccccccccccccccccccccceeec---ccCcceeeeeeccccccccccccccccccccccccccc
Confidence 664221 2235677777764 899999999986 8999999998753222 23445578999999999998
Q ss_pred CCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCE
Q 000054 2378 DLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSV 2457 (2548)
Q Consensus 2378 dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~V 2457 (2548)
+.+|++|+.||+|++||++. ........ ..................+|.+.|
T Consensus 153 -------~~~l~s~s~D~~v~v~~~~~---~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~v 204 (371)
T d1k8kc_ 153 -------SVLLAAGSCDFKCRIFSAYI---KEVEERPA------------------PTPWGSKMPFGELMFESSSSCGWV 204 (371)
T ss_dssp -------SSEEEEEETTSCEEEEECCC---TTTSCCCC------------------CBTTBSCCCTTCEEEECCCCSSCE
T ss_pred -------ccceeccccCcEEEEEeecc---Cccccccc------------------cccccccccceeeeeeccCccCcE
Confidence 78999999999999999642 11100000 000001111123334457899999
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcE
Q 000054 2458 TRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSV 2536 (2548)
Q Consensus 2458 tsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtI 2536 (2548)
.+++|+|+|++|++|+.||+|++||+.+++.+.++ .+|... |.+++|+|++ ++++|.|+.+
T Consensus 205 ~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~--------------~~~~~~----v~s~~fs~d~~~la~g~d~~~ 266 (371)
T d1k8kc_ 205 HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL--------------ASETLP----LLAVTFITESSLVAAGHDCFP 266 (371)
T ss_dssp EEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE--------------ECSSCC----EEEEEEEETTEEEEEETTSSC
T ss_pred EEEEeecccccccccccCCcceEEeeecccceeee--------------eccccc----ceeeeecCCCCEEEEEcCCce
Confidence 99999999999999999999999999999998877 456543 5678999999 7777889988
Q ss_pred EEEECCC
Q 000054 2537 KLIQLED 2543 (2548)
Q Consensus 2537 rIWDL~s 2543 (2548)
++|..+.
T Consensus 267 ~~~~~~~ 273 (371)
T d1k8kc_ 267 VLFTYDS 273 (371)
T ss_dssp EEEEEET
T ss_pred EEEEeeC
Confidence 8877654
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=2.5e-24 Score=257.80 Aligned_cols=284 Identities=14% Similarity=0.119 Sum_probs=206.0
Q ss_pred EEEEEEcCCCCEEEEEECCCe-EEEEEcCCCc--eeEEEeccCCCCCCCCCCCCCeEEEEEcc--CCCEEEEEeCCCcEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTH-IYLWEFGKDK--ATATYGVLPAANVPPPYALASISALQFDH--YGHRFASAALDGTVC 2296 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGs-VrLWDl~tg~--~l~t~~~l~ghs~~~~~H~~~VtsVaFSP--dG~~LaSGS~DGtVr 2296 (2548)
+.+++|+|+|+.++.++.+.. |+.|+..... ....+. +| |...|++++|+| ++.+|++|+.||+|+
T Consensus 20 ~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~---gh------~~~~v~~v~fsP~~~g~~lasgs~Dg~i~ 90 (325)
T d1pgua1 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT---GH------GSSVVTTVKFSPIKGSQYLCSGDESGKVI 90 (325)
T ss_dssp CCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEEC---TT------TTSCEEEEEECSSTTCCEEEEEETTSEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEe---CC------CCCCEEEEEEeeCCCCCEEEEEeCCCCEE
Confidence 467889999999998866543 5566644332 233332 22 246899999998 578999999999999
Q ss_pred EEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000054 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
+||+..++............+..|...|.+ |+++++.+++++.+ .++.+++|+..+ ++.+..+.+|...|++++|
T Consensus 91 iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~-~~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~ 167 (325)
T d1pgua1 91 VWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG-RDNFGVFISWDS--GNSLGEVSGHSQRINACHL 167 (325)
T ss_dssp EEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC-SSCSEEEEETTT--CCEEEECCSCSSCEEEEEE
T ss_pred EeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecc-ccceEEEEeecc--cccceeeeecccccccccc
Confidence 999987654332222222335567777764 89999999887632 578899999976 6788899999999999999
Q ss_pred ccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCC-CC--ccCCCCCceEEEc--
Q 000054 2375 FDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTG-SG--SKPGDQNGMLWYI-- 2449 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdG-k~--v~s~D~sv~Iwdi-- 2449 (2548)
+|++ ...+++++.||.|++||++ +++......... ........++|+|++ .+ .++.|+.+++|++
T Consensus 168 ~~~~------~~~~~~~~~d~~v~~~d~~---~~~~~~~~~~~~-~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~ 237 (325)
T d1pgua1 168 KQSR------PMRSMTVGDDGSVVFYQGP---PFKFSASDRTHH-KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS 237 (325)
T ss_dssp CSSS------SCEEEEEETTTEEEEEETT---TBEEEEEECSSS-CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT
T ss_pred cccc------cceEEEeeccccccccccc---ccccceeccccc-CCCCccEEeeeccccceeccccccccceeeeeecc
Confidence 9984 4578899999999999953 444444432211 222234567899974 54 5678999999984
Q ss_pred ------ccCCCCCEEEEEEe---CCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEE
Q 000054 2450 ------PKAHLGSVTRISTV---PNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDI 2520 (2548)
Q Consensus 2450 ------~~gH~~~VtsLafS---PdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsL 2520 (2548)
+.+|...+.++.|+ |+|++|++|+.||.|+|||+++++++.++. .|...+......+
T Consensus 238 ~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~--------------~~~~~~~~~~~~~ 303 (325)
T d1pgua1 238 GEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT--------------LDKQQLGNQQVGV 303 (325)
T ss_dssp CCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEE--------------CCTTCGGGCEEEE
T ss_pred ccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEE--------------ecCCcccCeEEEE
Confidence 34677777666665 789999999999999999999999998772 2222222223344
Q ss_pred EEcCCe-EEEEECCCcEEEEEC
Q 000054 2521 QVVSRG-FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2521 afSPdG-LaSGS~DGtIrIWDL 2541 (2548)
.+.+++ |+|||.||+|++||+
T Consensus 304 ~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 304 VATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEETTEEEEEETTSCEEEEET
T ss_pred EECCCCEEEEEECCCEEEEEEC
Confidence 566666 999999999999996
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=8.5e-24 Score=245.43 Aligned_cols=281 Identities=19% Similarity=0.243 Sum_probs=167.0
Q ss_pred CCccCCeE---EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe
Q 000054 2214 PATVENIS---TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA 2290 (2548)
Q Consensus 2214 ~~tl~gV~---V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS 2290 (2548)
...+.+|. +.|++ ++|++||||+.||+|+|||+.+++.+.++.. |.+.|.+++|++ ++|++|+
T Consensus 9 ~~~l~GH~~~V~s~~~--~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~----------h~~~V~~v~~~~--~~l~s~s 74 (342)
T d2ovrb2 9 PKVLKGHDDHVITCLQ--FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVG----------HTGGVWSSQMRD--NIIISGS 74 (342)
T ss_dssp CEEEECSTTSCEEEEE--EETTEEEEEETTSCEEEEETTTCCEEEECCC----------CSSCEEEEEEET--TEEEEEE
T ss_pred CEEECCcCCceEEEEE--ECCCEEEEEeCCCeEEEEECCCCCEEEEEeC----------CCCCEEEEEeCC--Cccccce
Confidence 33455554 34555 6789999999999999999999998887642 568999999986 4899999
Q ss_pred CCCcEEEEEcCCCcccccccCcc---------------------c-----------eeccCCcccEEEEcCCCCEEEEEe
Q 000054 2291 LDGTVCTWQLEVGGRSNVRPMES---------------------C-----------LCFSSHAMDVSYITSSGSVIAAAG 2338 (2548)
Q Consensus 2291 ~DGtVrVWDl~tgk~i~i~p~~s---------------------~-----------~t~~gH~~~V~afSpdGslLATgG 2338 (2548)
.||++++|+.............. . ..+..+.............+++++
T Consensus 75 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (342)
T d2ovrb2 75 TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA 154 (342)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEE
T ss_pred ecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeec
Confidence 99999999976542111000000 0 000000000011112223333333
Q ss_pred ccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCC
Q 000054 2339 HSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDR 2418 (2548)
Q Consensus 2339 ~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~ 2418 (2548)
.|+.|++||... ...+..+.+|...+..+.+.+. .+++|+.||.|++||++....-........
T Consensus 155 ---~d~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~---------~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~-- 218 (342)
T d2ovrb2 155 ---YDFMVKVWDPET--ETCLHTLQGHTNRVYSLQFDGI---------HVVSGSLDTSIRVWDVETGNCIHTLTGHQS-- 218 (342)
T ss_dssp ---TTSCEEEEEGGG--TEEEEEECCCSSCEEEEEECSS---------EEEEEETTSCEEEEETTTCCEEEEECCCCS--
T ss_pred ---CCCeEEEeeccc--ceeeEEEcCcccccccccCCCC---------EEEEEeCCCeEEEeecccceeeeEeccccc--
Confidence 455555555555 3444555555555555555555 555555555555555543222111111100
Q ss_pred CCCCccccccccCCCCCCccCCCCCceEEEc-----------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Q 000054 2419 GGSSINTCAHADAQTGSGSKPGDQNGMLWYI-----------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQ 2487 (2548)
Q Consensus 2419 ~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi-----------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tge 2487 (2548)
....+.++++--.+++.|+.+++|+. ...|...+.++.++ ++++++|+.||+|++||+++++
T Consensus 219 -----~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~ 291 (342)
T d2ovrb2 219 -----LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE 291 (342)
T ss_dssp -----CEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC
T ss_pred -----ceeEEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCC
Confidence 00111111111113344455555542 13467778877775 5799999999999999999999
Q ss_pred EEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCc----EEEEECCCC
Q 000054 2488 LVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGS----VKLIQLEDY 2544 (2548)
Q Consensus 2488 ll~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGt----IrIWDL~sg 2544 (2548)
+++++...+ ..+|. ..|++++|+|++ +++|+.||+ |++||++..
T Consensus 292 ~i~~~~~~~---------~~~~~----~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~~ 341 (342)
T d2ovrb2 292 FIRNLVTLE---------SGGSG----GVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 341 (342)
T ss_dssp EEEEEEECT---------TGGGT----CEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEEeccc---------CCCCC----CCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCCC
Confidence 998873211 13454 346788999999 789999986 999999754
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=1.1e-23 Score=256.33 Aligned_cols=256 Identities=13% Similarity=0.110 Sum_probs=188.4
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|.+++|+|++++|++|+.|++|+|||+.++.....+.. ..|...|++++|+|+++.|++|+.||+|++|+++
T Consensus 54 V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~--------~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~ 125 (371)
T d1k8kc_ 54 VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVI--------LRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125 (371)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEEC--------CCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCeEEEEeeccccccccccc--------ccccccccccccccccccceeecccCcceeeeee
Confidence 68999999999999999999999999988765555432 2355889999999999999999999999999998
Q ss_pred CCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCC----------------CCcceeee
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPP----------------TSSRASIT 2363 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~----------------~k~v~sl~ 2363 (2548)
....... ......+|...|.+ |+|++++|++|+ .|+.|++||..... ........
T Consensus 126 ~~~~~~~----~~~~~~~~~~~v~~v~~~p~~~~l~s~s---~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (371)
T d1k8kc_ 126 QENDWWV----CKHIKKPIRSTVLSLDWHPNSVLLAAGS---CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 198 (371)
T ss_dssp TTTTEEE----EEEECTTCCSCEEEEEECTTSSEEEEEE---TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC
T ss_pred ccccccc----ccccccccccccccccccccccceeccc---cCcEEEEEeeccCccccccccccccccccceeeeeecc
Confidence 6542211 12335667777764 899999999986 89999999986421 12344556
Q ss_pred ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCC
Q 000054 2364 CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQN 2443 (2548)
Q Consensus 2364 gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~s 2443 (2548)
+|.+.|.+++|+|+ ++.|++|+.||.|++|| ..+++.+..+
T Consensus 199 ~~~~~v~~~~~s~~-------g~~l~s~~~d~~i~iwd---~~~~~~~~~~----------------------------- 239 (371)
T d1k8kc_ 199 SSCGWVHGVCFSAN-------GSRVAWVSHDSTVCLAD---ADKKMAVATL----------------------------- 239 (371)
T ss_dssp CCSSCEEEEEECSS-------SSEEEEEETTTEEEEEE---GGGTTEEEEE-----------------------------
T ss_pred CccCcEEEEEeecc-------cccccccccCCcceEEe---eecccceeee-----------------------------
Confidence 88999999999998 78999999999999999 5566766665
Q ss_pred ceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC--CCcEEEEecccccc----------ccc----------
Q 000054 2444 GMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAK--AAQLVYHWSKLHER----------HTF---------- 2501 (2548)
Q Consensus 2444 v~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~--Tgell~tL~~~Hs~----------hsf---------- 2501 (2548)
..|..+|.+++|+|++++|++|+ |+.+++|+.. .+.....-...... ..|
T Consensus 240 -------~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (371)
T d1k8kc_ 240 -------ASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE 311 (371)
T ss_dssp -------ECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---
T ss_pred -------ecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEe
Confidence 67889999999999998888765 7776665543 33332211000000 000
Q ss_pred -----ccCcccCCCCceeecEEEEEEcCCe------EEEEECCCcEEEEECCC
Q 000054 2502 -----LQPSSRGFGGVVRAGVTDIQVVSRG------FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2502 -----l~~tl~GH~~~V~a~VtsLafSPdG------LaSGS~DGtIrIWDL~s 2543 (2548)
.......|.+. |+++++.+.+ |+|+|.||+|++||+++
T Consensus 312 ~~~~~~~~~~~~H~~~----I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 312 GSAAAGAGLDSLHKNS----VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp ------CCCSSSSSSC----EEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred ccccccceecccccCC----EEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 00001235543 5666776643 88999999999999864
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=4.7e-24 Score=248.97 Aligned_cols=276 Identities=14% Similarity=0.172 Sum_probs=200.6
Q ss_pred ccCCeE---EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000054 2216 TVENIS---TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2216 tl~gV~---V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
++.||. +.|+++ ++++|+||+.||+|+|||+.+++.+.++.. |.+.|++++|+|+ .+|++|+.|
T Consensus 7 tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~----------H~~~V~~l~~s~~-~~l~s~s~D 73 (355)
T d1nexb2 7 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSG----------HDGGVWALKYAHG-GILVSGSTD 73 (355)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEEC----------CSSCEEEEEEETT-TEEEEEETT
T ss_pred EECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEEC----------CCCCEEEEEEcCC-CEEEEEecc
Confidence 445553 467764 678999999999999999999999888753 5689999999985 589999999
Q ss_pred CcEEEEEcCCCcccccccCc-------------------------c----------------------------------
Q 000054 2293 GTVCTWQLEVGGRSNVRPME-------------------------S---------------------------------- 2313 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~-------------------------s---------------------------------- 2313 (2548)
|+|++|++............ .
T Consensus 74 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (355)
T d1nexb2 74 RTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYF 153 (355)
T ss_dssp CCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTE
T ss_pred cccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccce
Confidence 99999998765321110000 0
Q ss_pred ceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeC
Q 000054 2314 CLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGK 2393 (2548)
Q Consensus 2314 ~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~ 2393 (2548)
......|...+.+..++++++++++ .|+.|++||+.. .+.+....++...+.++.++|. +..+++++.
T Consensus 154 ~~~~~~~~~~v~~~~~~~~~~~~~~---~d~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 221 (355)
T d1nexb2 154 VGVLRGHMASVRTVSGHGNIVVSGS---YDNTLIVWDVAQ--MKCLYILSGHTDRIYSTIYDHE-------RKRCISASM 221 (355)
T ss_dssp EEEEECCSSCEEEEEEETTEEEEEE---TTSCEEEEETTT--TEEEEEECCCSSCEEEEEEETT-------TTEEEEEET
T ss_pred eeeeeeccccccccccccceeeeec---ccceeeeeeccc--ccceeeeecccccccccccccc-------ceeeecccc
Confidence 0000112223334455677888875 789999999876 5677788889999999999998 789999999
Q ss_pred CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcc------cCCCCCEEEE-EEeCCC
Q 000054 2394 GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP------KAHLGSVTRI-STVPNT 2466 (2548)
Q Consensus 2394 DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~------~gH~~~VtsL-afSPdG 2466 (2548)
||.|++|| ..++..+..+.. +.. ....+.++++--..++.|+.+++|++. ..|...+.++ .+++++
T Consensus 222 d~~i~i~d---~~~~~~~~~~~~---h~~-~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (355)
T d1nexb2 222 DTTIRIWD---LENGELMYTLQG---HTA-LVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSD 294 (355)
T ss_dssp TSCEEEEE---TTTCCEEEEECC---CSS-CCCEEEECSSEEEEECTTSEEEEEETTTCCEEEEEECTTCCCCCEEEECS
T ss_pred cceEEeee---cccccccccccc---ccc-cccccccccceeeeeecccccccccccccceecccccCCceEEEEEcCCC
Confidence 99999999 556777766632 111 223455554433377889999999964 3466666665 456777
Q ss_pred CEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEEC
Q 000054 2467 SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2467 ~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL 2541 (2548)
.++++|+ ||.|+|||+++|+++... +.+|.+. |++++|+|+. +++++.||+++||.+
T Consensus 295 ~~l~~g~-d~~i~vwd~~tg~~~~~~-------------~~~~~~~----V~~v~~~~~~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 295 NILVSGS-ENQFNIYNLRSGKLVHAN-------------ILKDADQ----IWSVNFKGKTLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp SEEEEEE-TTEEEEEETTTCCBCCSC-------------TTTTCSE----EEEEEEETTEEEEEEESSSCEEEEEE
T ss_pred CEEEEEe-CCEEEEEECCCCCEEEEE-------------ecCCCCC----EEEEEEcCCeEEEEEECCCcEEEEEE
Confidence 7777665 899999999999887533 4677754 4677999998 778999999777654
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=4.9e-22 Score=225.30 Aligned_cols=241 Identities=18% Similarity=0.235 Sum_probs=153.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
|.|++ ++|++||||+.||+|+|||+.+++.+.++.. |.+.|++++| ++++|++|+.||+|++|++.
T Consensus 18 V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~----------H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~ 83 (293)
T d1p22a2 18 VYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTG----------HTGSVLCLQY--DERVIITGSSDSTVRVWDVN 83 (293)
T ss_dssp EEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECC----------CSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred EEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEec----------CCCCEeeeec--ccceeecccccccccccccc
Confidence 46766 6899999999999999999999999888743 5689999987 57899999999999999998
Q ss_pred CCcccccccCc-----------------------------------cceeccCCcccEEEEcCCCCEEEEEeccCCCCeE
Q 000054 2302 VGGRSNVRPME-----------------------------------SCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2302 tgk~i~i~p~~-----------------------------------s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtV 2346 (2548)
.+......... .......|...+....+....+++++ .|+.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s---~d~~i 160 (293)
T d1p22a2 84 TGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSAS---GDRTI 160 (293)
T ss_dssp SCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEE---TTSEE
T ss_pred cccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceeccccccccc---CCCce
Confidence 76432111000 00011222333333333334444443 45556
Q ss_pred EEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000054 2347 VVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2347 rIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
++||.+. .+.+..+.+|...+..+.+.+. .+++|+.||+|++||+ .+.+.+...
T Consensus 161 ~~~d~~~--~~~~~~~~~~~~~v~~~~~~~~---------~l~~~~~dg~i~i~d~---~~~~~~~~~------------ 214 (293)
T d1p22a2 161 KVWNTST--CEFVRTLNGHKRGIACLQYRDR---------LVVSGSSDNTIRLWDI---ECGACLRVL------------ 214 (293)
T ss_dssp EEEETTT--CCEEEEEECCSSCEEEEEEETT---------EEEEEETTSCEEEEET---TTCCEEEEE------------
T ss_pred eeecCCC--CcEEEEEcccccccccccCCCC---------eEEEecCCCEEEEEec---ccceeeeee------------
Confidence 6666544 3445555555555555554433 5555555666666652 233333332
Q ss_pred ccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcc
Q 000054 2427 AHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSS 2506 (2548)
Q Consensus 2427 ~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl 2506 (2548)
.+|...|.. +.+++.+|++|+.||.|++||+.++........ ......+
T Consensus 215 ------------------------~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~ 263 (293)
T d1p22a2 215 ------------------------EGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG-----TLCLRTL 263 (293)
T ss_dssp ------------------------CCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTT-----TTEEEEE
T ss_pred ------------------------cccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCC-----ceeeEEe
Confidence 457777765 556889999999999999999764322111100 0001124
Q ss_pred cCCCCceeecEEEEEEcCCeEEEEECCCcEEEEE
Q 000054 2507 RGFGGVVRAGVTDIQVVSRGFLSCGGDGSVKLIQ 2540 (2548)
Q Consensus 2507 ~GH~~~V~a~VtsLafSPdGLaSGS~DGtIrIWD 2540 (2548)
.+|.+.| ++++|++..|+|||.||+|++||
T Consensus 264 ~~H~~~V----~~v~~d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 264 VEHSGRV----FRLQFDEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp CCCSSCC----CCEEECSSCEEECCSSSEEEEEC
T ss_pred cCCCCCE----EEEEEcCCEEEEEecCCEEEEeC
Confidence 7888665 45588766699999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.5e-22 Score=240.29 Aligned_cols=236 Identities=13% Similarity=0.206 Sum_probs=190.4
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEE
Q 000054 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVV 2347 (2548)
Q Consensus 2270 H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVr 2347 (2548)
|...|++++|+|+|++|++|+ ||.|++||+.++..... .......+|...|. +|+|+|++|++++ .||.|+
T Consensus 50 H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~---~~~~~~~~h~~~I~~v~~s~dg~~l~s~~---~dg~i~ 122 (337)
T d1gxra_ 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP---VSQLDCLNRDNYIRSCKLLPDGCTLIVGG---EASTLS 122 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC---SEEEECSCTTSBEEEEEECTTSSEEEEEE---SSSEEE
T ss_pred CCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccce---eEEeeecCCCCcEEEEEEcCCCCEEEEee---cccccc
Confidence 668999999999999999987 89999999987643221 12233567888886 4899999999987 899999
Q ss_pred EEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccc
Q 000054 2348 VWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCA 2427 (2548)
Q Consensus 2348 IWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~ 2427 (2548)
+||+.....+....+..|...+.++.|+|+ +.++++++.|+.|++||+ .+++....... + ......
T Consensus 123 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~l~s~~~d~~i~~~~~---~~~~~~~~~~~---~-~~~v~~ 188 (337)
T d1gxra_ 123 IWDLAAPTPRIKAELTSSAPACYALAISPD-------SKVCFSCCSDGNIAVWDL---HNQTLVRQFQG---H-TDGASC 188 (337)
T ss_dssp EEECCCC--EEEEEEECSSSCEEEEEECTT-------SSEEEEEETTSCEEEEET---TTTEEEEEECC---C-SSCEEE
T ss_pred cccccccccccccccccccccccccccccc-------cccccccccccccccccc---ccccccccccc---c-cccccc
Confidence 999986545567788899999999999998 789999999999999994 45565555411 1 123455
Q ss_pred cccCCCCCC--ccCCCCCceEEEccc-------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccc
Q 000054 2428 HADAQTGSG--SKPGDQNGMLWYIPK-------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHER 2498 (2548)
Q Consensus 2428 vafSpdGk~--v~s~D~sv~Iwdi~~-------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~ 2498 (2548)
+.+++++.. +++.++.+++|++.. .|.+.|.+++|+|++++|++|+.||.|++||+++++....
T Consensus 189 l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~------- 261 (337)
T d1gxra_ 189 IDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL------- 261 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEE-------
T ss_pred ccccccccccccccccccccccccccceeecccccccceEEEEEcccccccceeccccccccccccccccccc-------
Confidence 778888877 667788999998643 4788999999999999999999999999999998887642
Q ss_pred cccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2499 HTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2499 hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.+|.+ .|++++|+|+| |++|+.||+|++||+.++.
T Consensus 262 --------~~~~~----~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~ 298 (337)
T d1gxra_ 262 --------HLHES----CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA 298 (337)
T ss_dssp --------CCCSS----CEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred --------ccccc----ccceEEECCCCCEEEEEeCCCeEEEEECCCCC
Confidence 34554 35778999999 8999999999999998764
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=5.3e-23 Score=237.48 Aligned_cols=279 Identities=10% Similarity=0.068 Sum_probs=186.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSGS~DGtVrVWDl 2300 (2548)
|.+++|+|++++||+|+.||+|+|||+.++.....+.... .|.+.|++++|+|+ +.+|++|+.||+|++|++
T Consensus 14 I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~-------~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~ 86 (342)
T d1yfqa_ 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL-------RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp EEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE-------ECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred EEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEec-------CCCCCEEEEEEeCCCCCEEEEcccccceeeeec
Confidence 6999999999999999999999999998766544443222 25689999999986 568999999999999999
Q ss_pred CCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCc--ceeeecc--CCCeEEEEEcc
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--RASITCH--EGGARSISVFD 2376 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~--v~sl~gH--s~~VtSLafsP 2376 (2548)
..+....... .............+++..+++++ .|+.+++||++...... ......+ ........+.+
T Consensus 87 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (342)
T d1yfqa_ 87 IGSPSFQALT-----NNEANLGICRICKYGDDKLIAAS---WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT 158 (342)
T ss_dssp SSSSSEEECB-----SCCCCSCEEEEEEETTTEEEEEE---TTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred cccccccccc-----ccccccccccccccccccccccc---cccccceeeccccccceeeecccccccccceeeeeeeec
Confidence 8765332110 01111122334566778888886 89999999987522221 1122222 22333444455
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc-----
Q 000054 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI----- 2449 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi----- 2449 (2548)
. +..+++++.||.|++||++........... ............+..++.. ++..++.+.+|+.
T Consensus 159 ~-------~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~ 228 (342)
T d1yfqa_ 159 N-------SSRLIVGMNNSQVQWFRLPLCEDDNGTIEE---SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD 228 (342)
T ss_dssp C-------SSEEEEEESTTEEEEEESSCCTTCCCEEEE---CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC
T ss_pred c-------CCceeeecCCCcEEEEecccCcccceeeee---cccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcc
Confidence 5 569999999999999997643222222111 1111111122223333333 5566677777752
Q ss_pred ------------------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCC
Q 000054 2450 ------------------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGG 2511 (2548)
Q Consensus 2450 ------------------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~ 2511 (2548)
..+|...|++++|+|++++|+||+.||.|++||+++++.+.++. ..|..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~-------------~~~~~ 295 (342)
T d1yfqa_ 229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-------------KFNED 295 (342)
T ss_dssp STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC-------------CCSSS
T ss_pred eeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec-------------CCCCC
Confidence 13567789999999999999999999999999999999988772 22332
Q ss_pred ceeecEEEEEEcCCe--EEEEECCCcEEEEECCCC
Q 000054 2512 VVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2512 ~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg 2544 (2548)
. + ++|+|+| +++++.|+++++|.....
T Consensus 296 ~----~--~~~s~~~~~l~~a~sdd~~~~~~~~~~ 324 (342)
T d1yfqa_ 296 S----V--VKIACSDNILCLATSDDTFKTNAAIDQ 324 (342)
T ss_dssp E----E--EEEEECSSEEEEEEECTHHHHCSSSCT
T ss_pred E----E--EEEEeCCCEEEEEEcCCcEEEeeeeCC
Confidence 1 2 3566666 888888888888876543
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=2.4e-22 Score=241.46 Aligned_cols=278 Identities=17% Similarity=0.187 Sum_probs=194.6
Q ss_pred EEEECCCeEEEEEcCCCceeEE-EeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccC--
Q 000054 2235 LVGSSNTHIYLWEFGKDKATAT-YGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPM-- 2311 (2548)
Q Consensus 2235 ASGS~DGsVrLWDl~tg~~l~t-~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~-- 2311 (2548)
+.+..++...+|+....+.... +. ....|.+.|++|+|+|+|++|++|+ ||+|++||+.+++.......
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~ 103 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPREIDVELH-------KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDS 103 (388)
T ss_dssp SEEECSSCEEEECTTSCCCEEEEEE-------EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--
T ss_pred cccCCCCcEEEeCCCCCcceeeeeE-------eeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccc
Confidence 3566777888998765443221 11 0113679999999999999999987 89999999988764322111
Q ss_pred --------ccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000054 2312 --------ESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2312 --------~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
........|...|. +|+|+|++|++|+ .||.|++||... .+.+..+.+|...|.++.++++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~---~dg~v~i~~~~~--~~~~~~~~~h~~~v~~~~~~~~---- 174 (388)
T d1erja_ 104 AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA---EDRLIRIWDIEN--RKIVMILQGHEQDIYSLDYFPS---- 174 (388)
T ss_dssp ---------------CCCCBEEEEEECTTSSEEEEEE---TTSCEEEEETTT--TEEEEEECCCSSCEEEEEECTT----
T ss_pred cccccccccccccccCCCCCEEEEEECCCCCcceecc---cccccccccccc--cccccccccccccccccccccc----
Confidence 01112345666676 4899999999997 899999999976 6778888899999999999988
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEcc---------
Q 000054 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYIP--------- 2450 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi~--------- 2450 (2548)
+..+++|+.+|.|++||.+ +......... .........+.+++.+ +++.++.+++|+..
T Consensus 175 ---~~~~~~~~~~~~i~~~d~~---~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~ 244 (388)
T d1erja_ 175 ---GDKLVSGSGDRTVRIWDLR---TGQCSLTLSI----EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD 244 (388)
T ss_dssp ---SSEEEEEETTSEEEEEETT---TTEEEEEEEC----SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred ---cccccccccceeeeeeecc---cccccccccc----ccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeec
Confidence 6799999999999999954 4444443311 1122233445556776 56778889999842
Q ss_pred ------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcC
Q 000054 2451 ------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVS 2524 (2548)
Q Consensus 2451 ------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSP 2524 (2548)
.+|.+.|++++|+|++++|++|+.||.|++||+++++............. ......|.+ .|.+++|+|
T Consensus 245 ~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~v~~~~~s~ 318 (388)
T d1erja_ 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC--EVTYIGHKD----FVLSVATTQ 318 (388)
T ss_dssp ------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CE--EEEEECCSS----CEEEEEECG
T ss_pred cccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccce--eeecccccc----eEEEEEECC
Confidence 36889999999999999999999999999999988766544321111100 111245553 457789999
Q ss_pred Ce--EEEEECCCcEEEEECCCCc
Q 000054 2525 RG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2525 dG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+| |++|+.||+|++||+.++.
T Consensus 319 ~~~~l~sg~~dg~i~vwd~~~~~ 341 (388)
T d1erja_ 319 NDEYILSGSKDRGVLFWDKKSGN 341 (388)
T ss_dssp GGCEEEEEETTSEEEEEETTTCC
T ss_pred CCCEEEEEeCCCEEEEEECCCCc
Confidence 99 8899999999999998874
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.89 E-value=8.1e-22 Score=235.52 Aligned_cols=239 Identities=18% Similarity=0.194 Sum_probs=190.8
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEE
Q 000054 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVV 2347 (2548)
Q Consensus 2270 H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVr 2347 (2548)
+.+.+..++++|+|+.|+.+. ++.|.+||++++... ..+.+|...|.+ |+|+|++|++|+ .||+|+
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~--------~~~~~H~~~v~~~~~sp~g~~latg~---~dg~i~ 83 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDT--------EIYTEHSHQTTVAKTSPSGYYCASGD---VHGNVR 83 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCC--------EEECCCSSCEEEEEECTTSSEEEEEE---TTSEEE
T ss_pred CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCcee--------EEEcCCCCCEEEEEEeCCCCeEeccc---cCceEe
Confidence 346677899999999999885 667999999876432 236789988885 899999999997 899999
Q ss_pred EEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeC--CCcEEEEeCCccccCceeeeecCCCCCCCccc
Q 000054 2348 VWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGK--GGDVGIHDFRYIATGKTKKHKHSDRGGSSINT 2425 (2548)
Q Consensus 2348 IWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~--DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~ 2425 (2548)
+||+..........+.+|.+.|.+++|+|+ ++++++++. ++.+++||+ .+++....+. .+ ....
T Consensus 84 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d-------~~~l~~~~~~~~~~~~v~~~---~~~~~~~~l~---~h-~~~v 149 (311)
T d1nr0a1 84 IWDTTQTTHILKTTIPVFSGPVKDISWDSE-------SKRIAAVGEGRERFGHVFLF---DTGTSNGNLT---GQ-ARAM 149 (311)
T ss_dssp EEESSSTTCCEEEEEECSSSCEEEEEECTT-------SCEEEEEECCSSCSEEEEET---TTCCBCBCCC---CC-SSCE
T ss_pred eeeeeccccccccccccccCcccccccccc-------cccccccccccccccccccc---cccccccccc---cc-cccc
Confidence 999987433345668899999999999998 778888875 466999994 4555554441 11 2234
Q ss_pred cccccCCCCCC---ccCCCCCceEEEcc--------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 000054 2426 CAHADAQTGSG---SKPGDQNGMLWYIP--------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSK 2494 (2548)
Q Consensus 2426 ~~vafSpdGk~---v~s~D~sv~Iwdi~--------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~ 2494 (2548)
..+.|+|++.+ .++.|+.+++|+.. .+|...|++++|+|+++++++|+.||.|++||..+++.+..++.
T Consensus 150 ~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~ 229 (311)
T d1nr0a1 150 NSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFED 229 (311)
T ss_dssp EEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBC
T ss_pred ccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccc
Confidence 56789999886 35678999999853 47899999999999999999999999999999999999887742
Q ss_pred cccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2495 LHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2495 ~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
... ...+|.+. |++++|+|++ |++|+.||+|+|||+.++.
T Consensus 230 ~~~-------~~~~h~~~----V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~ 271 (311)
T d1nr0a1 230 DSL-------KNVAHSGS----VFGLTWSPDGTKIASASADKTIKIWNVATLK 271 (311)
T ss_dssp TTS-------SSCSSSSC----EEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred ccc-------cccccccc----ccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 111 13678754 5678999999 8999999999999998875
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.88 E-value=3.1e-21 Score=220.62 Aligned_cols=232 Identities=22% Similarity=0.356 Sum_probs=193.6
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeE
Q 000054 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtV 2346 (2548)
+|.+.|++|+|+|++++|+||+.||+|++||+++++.. ..+.+|...|.+ +++++.++++++ .++.+
T Consensus 15 GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~--------~~~~~h~~~V~~~~~~~~~~~~~~~~---~~~~~ 83 (317)
T d1vyhc1 15 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--------RTLKGHTDSVQDISFDHSGKLLASCS---ADMTI 83 (317)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC--------EEECCCSSCEEEEEECTTSSEEEEEE---TTSCC
T ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEE--------EEEeCCCCcEEEEeeecccccccccc---ccccc
Confidence 47799999999999999999999999999999987533 347788888874 899999999986 88999
Q ss_pred EEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccc
Q 000054 2347 VVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTC 2426 (2548)
Q Consensus 2347 rIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~ 2426 (2548)
.+|+... .+....+.+|...+.++.++++ +..+++++.|+.+++|| +.+++.+..+.. ......
T Consensus 84 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~d~~~~~~~---~~~~~~~~~~~~----~~~~~~ 147 (317)
T d1vyhc1 84 KLWDFQG--FECIRTMHGHDHNVSSVSIMPN-------GDHIVSASRDKTIKMWE---VQTGYCVKTFTG----HREWVR 147 (317)
T ss_dssp CEEETTS--SCEEECCCCCSSCEEEEEECSS-------SSEEEEEETTSEEEEEE---TTTCCEEEEEEC----CSSCEE
T ss_pred ccccccc--cccccccccccccceeeeccCC-------CceEEeeccCcceeEee---cccceeeeEEcc----CCCcce
Confidence 9999875 5566777789999999999998 78999999999999999 455666666521 122345
Q ss_pred ccccCCCCCC--ccCCCCCceEEEc--------ccCCCCCEEEEEEeCCC--------------------CEEEEEeCCC
Q 000054 2427 AHADAQTGSG--SKPGDQNGMLWYI--------PKAHLGSVTRISTVPNT--------------------SLFLTGSKDG 2476 (2548)
Q Consensus 2427 ~vafSpdGk~--v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPdG--------------------~~LaSGS~DG 2476 (2548)
.+.+++++.+ .++.++.+++|+. +.+|...+.+++|+|++ .++++|+.||
T Consensus 148 ~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 227 (317)
T d1vyhc1 148 MVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 227 (317)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred eeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCC
Confidence 6788899887 5677889999985 34788899999998753 5799999999
Q ss_pred cEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2477 DVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2477 tIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.|++||+++++++.++ .+|.+. |.+++++|++ |++|+.||+|++||+.++.
T Consensus 228 ~i~~~~~~~~~~~~~~--------------~~~~~~----v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~ 280 (317)
T d1vyhc1 228 TIKMWDVSTGMCLMTL--------------VGHDNW----VRGVLFHSGGKFILSCADDKTLRVWDYKNKR 280 (317)
T ss_dssp EEEEEETTTTEEEEEE--------------ECCSSC----EEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred EEEEEECCCCcEEEEE--------------eCCCCC----EEEEEECCCCCEEEEEECCCeEEEEECCCCc
Confidence 9999999999998877 567643 5677999999 8999999999999998764
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.87 E-value=5.1e-21 Score=222.63 Aligned_cols=232 Identities=16% Similarity=0.112 Sum_probs=178.2
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeE
Q 000054 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtV 2346 (2548)
+|.+.|++++|+|++++|+||+.||+|++||+++++..... ..+|...|.+ |+|+|++++++ .|+.+
T Consensus 10 GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~-------~~~h~~~v~~v~~~~~g~~~~~~----~d~~v 78 (299)
T d1nr0a2 10 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF-------PDVHATMITGIKTTSKGDLFTVS----WDDHL 78 (299)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS-------SCSCSSCEEEEEECTTSCEEEEE----TTTEE
T ss_pred CCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE-------cCCCCCcEEEEEeeccceeeccc----ceeeE
Confidence 46699999999999999999999999999999988644321 2467777764 89999877665 69999
Q ss_pred EEEECCCCCCC-cceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccc
Q 000054 2347 VVWDTLAPPTS-SRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINT 2425 (2548)
Q Consensus 2347 rIWDl~t~~~k-~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~ 2425 (2548)
++|+....... .......|...+.+++++++ +..++++ .++.+++|+.. +..... .....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-------g~~~~~~-~~~~i~~~~~~-----~~~~~~------~~~~~ 139 (299)
T d1nr0a2 79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSAD-------GDIAVAA-CYKHIAIYSHG-----KLTEVP------ISYNS 139 (299)
T ss_dssp EEECSSSSSSCTTSCCEEECSSCEEEEEECTT-------SSCEEEE-ESSEEEEEETT-----EEEEEE------CSSCE
T ss_pred EEeccCCccccccccccccccccccccccccc-------ccccccc-ccccccccccc-----cccccc------ccccc
Confidence 99998643222 23344567889999999998 5555554 56789999943 222221 11223
Q ss_pred cccccCCCCCC--ccCCCCCceEEEcc---------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecc
Q 000054 2426 CAHADAQTGSG--SKPGDQNGMLWYIP---------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSK 2494 (2548)
Q Consensus 2426 ~~vafSpdGk~--v~s~D~sv~Iwdi~---------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~ 2494 (2548)
..++++|+++. ++..++.+++|++. ..|...|++++|+|++++|++|+.||.|++||+.++..+...
T Consensus 140 ~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~-- 217 (299)
T d1nr0a2 140 SCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT-- 217 (299)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC--
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--
Confidence 45788999887 66788899999852 358899999999999999999999999999999988766433
Q ss_pred cccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2495 LHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2495 ~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
..+.+|... |++++|+|++ |++|+.||+|++||+.++.
T Consensus 218 ---------~~~~~h~~~----v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~ 257 (299)
T d1nr0a2 218 ---------NSWTFHTAK----VACVSWSPDNVRLATGSLDNSVIVWNMNKPS 257 (299)
T ss_dssp ---------CCCCCCSSC----EEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred ---------ccccccccc----cccccccccccceEEEcCCCEEEEEECCCCC
Confidence 124677654 5677999999 8899999999999998753
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=5.7e-22 Score=229.82 Aligned_cols=241 Identities=17% Similarity=0.182 Sum_probs=174.5
Q ss_pred CCccCCeE--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC
Q 000054 2214 PATVENIS--TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL 2291 (2548)
Q Consensus 2214 ~~tl~gV~--V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~ 2291 (2548)
.+++.+|. |.+++|+| |+||+.||+|++||..++. . .|...|.+++|++++ .+++++.
T Consensus 6 i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~--------~-------~h~~~V~~~~~~~~~-~~~s~s~ 65 (287)
T d1pgua2 6 LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH--------Q-------DHSNLIVSLDNSKAQ-EYSSISW 65 (287)
T ss_dssp EEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE--------C-------CCCSCEEEEECCSTT-CCEEEET
T ss_pred eEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC--------C-------CCCCCEEEEEecCCC-eEEEEee
Confidence 34556665 78999987 9999999999999976532 1 256889999998754 5899999
Q ss_pred CCcEEEEEcCCCcccc------cccC---------ccceecc----------CCcccEEEEcCCCCEEEEEeccCCCCeE
Q 000054 2292 DGTVCTWQLEVGGRSN------VRPM---------ESCLCFS----------SHAMDVSYITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~------i~p~---------~s~~t~~----------gH~~~V~afSpdGslLATgG~SS~DGtV 2346 (2548)
|++|++|++...+... ..+. .....+. .+...+.++++++..+++++ .+++.|
T Consensus 66 D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~v 143 (287)
T d1pgua2 66 DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGL--EEGNTI 143 (287)
T ss_dssp TTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEE--TTTSCE
T ss_pred ccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeec--ccccee
Confidence 9999999876432100 0000 0000011 11223345677888888876 356689
Q ss_pred EEEECCCCCCCccee-eeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccc
Q 000054 2347 VVWDTLAPPTSSRAS-ITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINT 2425 (2548)
Q Consensus 2347 rIWDl~t~~~k~v~s-l~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~ 2425 (2548)
++|++.. .+.... ...|.+.+++++|+|+ +.+|++|+.||.|++||+ .+++.....
T Consensus 144 ~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~-------~~~l~~g~~dg~i~i~d~---~~~~~~~~~----------- 200 (287)
T d1pgua2 144 QVFKLSD--LEVSFDLKTPLRAKPSYISISPS-------ETYIAAGDVMGKILLYDL---QSREVKTSR----------- 200 (287)
T ss_dssp EEEETTE--EEEEEECSSCCSSCEEEEEECTT-------SSEEEEEETTSCEEEEET---TTTEEEECC-----------
T ss_pred eeeeccc--cceeeeeeeccCCceeEEEeccC-------ccccccccccccccceee---ccccccccc-----------
Confidence 9999864 233233 3357889999999998 789999999999999994 344433221
Q ss_pred cccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCC----------CCEEEEEeCCCcEEEEECCCCc-EEEEecc
Q 000054 2426 CAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPN----------TSLFLTGSKDGDVKLWDAKAAQ-LVYHWSK 2494 (2548)
Q Consensus 2426 ~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPd----------G~~LaSGS~DGtIrIWDl~Tge-ll~tL~~ 2494 (2548)
..+|...|.+++|+|. +.+|++|+.||+|+|||++++. .+..
T Consensus 201 ------------------------~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~--- 253 (287)
T d1pgua2 201 ------------------------WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA--- 253 (287)
T ss_dssp ------------------------SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE---
T ss_pred ------------------------ccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEE---
Confidence 2578999999999874 4689999999999999998744 4432
Q ss_pred cccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCCcEEEEEC
Q 000054 2495 LHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2495 ~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DGtIrIWDL 2541 (2548)
+.+|.+. |++++|+|++ |+|+|.||+|++|++
T Consensus 254 -----------~~~h~~~----V~~v~~~~~~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 254 -----------LNAHKDG----VNNLLWETPSTLVSSGADACIKRWNV 286 (287)
T ss_dssp -----------TTSSTTC----EEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred -----------eCCCCCC----eEEEEECCCCEEEEEECCCeEEEEEE
Confidence 3678754 5677999999 999999999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=1e-20 Score=231.66 Aligned_cols=266 Identities=14% Similarity=0.145 Sum_probs=173.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCcee----EEEeccCCCCCCCCCCCCCeEEEEE------cc-CCCEEEEEe
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKAT----ATYGVLPAANVPPPYALASISALQF------DH-YGHRFASAA 2290 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l----~t~~~l~ghs~~~~~H~~~VtsVaF------SP-dG~~LaSGS 2290 (2548)
|.+++++ +++++||+.|++|+|||..+.... ..... ..|...+..+.. +. ++..+++++
T Consensus 17 I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 86 (393)
T d1sq9a_ 17 IFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH--------FVHKSGLHHVDVLQAIERDAFELCLVATTS 86 (393)
T ss_dssp EEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEE--------ECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred cEEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccceeEee--------eeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence 4777765 479999999999999997754321 11111 112233332222 21 345788999
Q ss_pred CCCcEEEEEcCCCcccccccCccce----eccCCcccEEEEcCC-----CCEEEEEeccCCCCeEEEEECCCCCC-----
Q 000054 2291 LDGTVCTWQLEVGGRSNVRPMESCL----CFSSHAMDVSYITSS-----GSVIAAAGHSSNGINVVVWDTLAPPT----- 2356 (2548)
Q Consensus 2291 ~DGtVrVWDl~tgk~i~i~p~~s~~----t~~gH~~~V~afSpd-----GslLATgG~SS~DGtVrIWDl~t~~~----- 2356 (2548)
.||.|++|++............... ....+.....++.++ +.++++++ .||.+++||+.....
T Consensus 87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~dg~i~vw~~~~~~~~~~~~ 163 (393)
T d1sq9a_ 87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD---VKGTTYIWKFHPFADESNSL 163 (393)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE---TTSCEEEEEEESSSSHHHHT
T ss_pred CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEc---CCCcEEEEEeecCCccccee
Confidence 9999999998755322111000000 011122222234333 46777775 899999999753111
Q ss_pred ----Cc-------ceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccc
Q 000054 2357 ----SS-------RASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINT 2425 (2548)
Q Consensus 2357 ----k~-------v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~ 2425 (2548)
.. ......+...+++++|+|+. +|++|+.||+|++|| +.+++.+..+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--------~lasgs~Dg~i~iwd---~~~~~~~~~~~~--------- 223 (393)
T d1sq9a_ 164 TLNWSPTLELQGTVESPMTPSQFATSVDISERG--------LIATGFNNGTVQISE---LSTLRPLYNFES--------- 223 (393)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--------EEEEECTTSEEEEEE---TTTTEEEEEEEC---------
T ss_pred eeeeccceecccceecccCCCCcEEEEEECCCC--------EEEEEeCCCcEEEEe---eccccccccccc---------
Confidence 00 11112355678999999983 999999999999999 556666655410
Q ss_pred cccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCc---EEEEECCCCcEEEEecccccccccc
Q 000054 2426 CAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGD---VKLWDAKAAQLVYHWSKLHERHTFL 2502 (2548)
Q Consensus 2426 ~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGt---IrIWDl~Tgell~tL~~~Hs~hsfl 2502 (2548)
...+.+|..+|++++|+|+|++|++|+.|++ |++||+++++.+.++........ .
T Consensus 224 ---------------------~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~-~ 281 (393)
T d1sq9a_ 224 ---------------------QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQ-A 281 (393)
T ss_dssp ---------------------CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-------
T ss_pred ---------------------ccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeecccccccc-c
Confidence 0123679999999999999999999999874 99999999999998843221111 1
Q ss_pred cCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCcc
Q 000054 2503 QPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2503 ~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~l 2546 (2548)
...+.||.+. |++++|+|+| |+|||.||+|++||++++.+
T Consensus 282 ~~~~~gH~~~----V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~ 323 (393)
T d1sq9a_ 282 SLGEFAHSSW----VMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 323 (393)
T ss_dssp --CCBSBSSC----EEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred eeeeecccCc----eeeeccCCCCCeeEEECCCCEEEEEECCCCCE
Confidence 2335789754 5777999999 89999999999999998753
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.85 E-value=6.7e-20 Score=213.61 Aligned_cols=204 Identities=21% Similarity=0.296 Sum_probs=160.2
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeE
Q 000054 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtV 2346 (2548)
+|.+.|++|+|+|++++|+||+.||+|++||+.+++.. ..+..|...|.+ |+|+++++++++ .|+.+
T Consensus 53 GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~--------~~~~~~~~~v~~v~~~~~~~~l~~~~---~d~~i 121 (340)
T d1tbga_ 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKV--------HAIPLRSSWVMTCAYAPSGNYVACGG---LDNIC 121 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE--------EEEECSCSCEEEEEECTTSSEEEEEE---TTCCE
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeE--------EEEecccccEEeeEeeccceeeeeec---cccee
Confidence 36699999999999999999999999999999987543 236678888874 899999999997 89999
Q ss_pred EEEECCCCCCC--cceeeeccCC-----------------------------------------CeEEEEEccCCCCCCC
Q 000054 2347 VVWDTLAPPTS--SRASITCHEG-----------------------------------------GARSISVFDNDLGSGS 2383 (2548)
Q Consensus 2347 rIWDl~t~~~k--~v~sl~gHs~-----------------------------------------~VtSLafsP~dlg~gs 2383 (2548)
++|+....... ....+.+|.. .+....+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 195 (340)
T d1tbga_ 122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD------ 195 (340)
T ss_dssp EEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTT------
T ss_pred ecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccc------
Confidence 99997642211 1222333333 2333343333
Q ss_pred CCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEe
Q 000054 2384 VSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTV 2463 (2548)
Q Consensus 2384 ~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafS 2463 (2548)
..++++|+.|+.|++||+ .+++.+..+ .+|.+.|++++|+
T Consensus 196 -~~~~~~~~~d~~v~i~d~---~~~~~~~~~------------------------------------~~h~~~i~~v~~~ 235 (340)
T d1tbga_ 196 -TRLFVSGACDASAKLWDV---REGMCRQTF------------------------------------TGHESDINAICFF 235 (340)
T ss_dssp -SSEEEEEETTTEEEEEET---TTTEEEEEE------------------------------------CCCSSCEEEEEEC
T ss_pred -cceeEEeecCceEEEEEC---CCCcEEEEE------------------------------------eCCCCCeEEEEEC
Confidence 568899999999999994 456666555 7799999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEEC
Q 000054 2464 PNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2464 PdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL 2541 (2548)
|++++|++|+.||.|++||++..+.+..+. ...|. ..|.+++|+|+| |++|+.||+|++||+
T Consensus 236 p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~------------~~~~~----~~i~~~~~s~~~~~l~~g~~dg~i~iwd~ 299 (340)
T d1tbga_ 236 PNGNAFATGSDDATCRLFDLRADQELMTYS------------HDNII----CGITSVSFSKSGRLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEEEEC------------CTTCC----SCEEEEEECSSSCEEEEEETTSCEEEEET
T ss_pred CCCCEEEEEeCCCeEEEEeecccccccccc------------ccccc----CceEEEEECCCCCEEEEEECCCEEEEEEC
Confidence 999999999999999999999998887662 12232 346778999999 889999999999999
Q ss_pred CCCc
Q 000054 2542 EDYQ 2545 (2548)
Q Consensus 2542 ~sg~ 2545 (2548)
.++.
T Consensus 300 ~~~~ 303 (340)
T d1tbga_ 300 LKAD 303 (340)
T ss_dssp TTCC
T ss_pred CCCc
Confidence 8764
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=2.7e-20 Score=227.74 Aligned_cols=271 Identities=14% Similarity=0.172 Sum_probs=177.8
Q ss_pred CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC-----CCEEEEEeCCCcEEEEEcCCCcc
Q 000054 2231 RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-----GHRFASAALDGTVCTWQLEVGGR 2305 (2548)
Q Consensus 2231 G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-----G~~LaSGS~DGtVrVWDl~tgk~ 2305 (2548)
+.++++++.||.|++|++..+.....+............+...+..++|.++ +.++++++.||++++|++.....
T Consensus 79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~ 158 (393)
T d1sq9a_ 79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 158 (393)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCc
Confidence 3467799999999999987543322111111111122335577889999875 46899999999999999864321
Q ss_pred cccc-cC---------ccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcc------eeeeccCC
Q 000054 2306 SNVR-PM---------ESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSR------ASITCHEG 2367 (2548)
Q Consensus 2306 i~i~-p~---------~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v------~sl~gHs~ 2367 (2548)
.... .. ........+...+ .+++|++ ++++|+ .|++|++||+.+ ++++ ..+.+|..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs---~Dg~i~iwd~~~--~~~~~~~~~~~~l~~h~~ 232 (393)
T d1sq9a_ 159 ESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF---NNGTVQISELST--LRPLYNFESQHSMINNSN 232 (393)
T ss_dssp HHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC---TTSEEEEEETTT--TEEEEEEECCC---CCCC
T ss_pred ccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEe---CCCcEEEEeecc--cccccccccccccccccc
Confidence 1100 00 0001111222222 3488887 788875 899999999976 3433 34557999
Q ss_pred CeEEEEEccCCCCCCCCCCEEEEEeCCCc---EEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCc
Q 000054 2368 GARSISVFDNDLGSGSVSPLIVTGGKGGD---VGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNG 2444 (2548)
Q Consensus 2368 ~VtSLafsP~dlg~gs~g~lLVSGS~DGt---VrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv 2444 (2548)
.|++++|+|+ +++|++|+.|++ |++|| +.+++.+..+... ....
T Consensus 233 ~V~~l~~spd-------g~~l~sgs~D~t~~~i~lwd---~~~g~~~~~l~~~-----------------------~~~~ 279 (393)
T d1sq9a_ 233 SIRSVKFSPQ-------GSLLAIAHDSNSFGCITLYE---TEFGERIGSLSVP-----------------------THSS 279 (393)
T ss_dssp CEEEEEECSS-------TTEEEEEEEETTEEEEEEEE---TTTCCEEEEECBC---------------------------
T ss_pred eEEEcccccc-------cceeeeecCCCCcceeeecc---cccceeeeeeccc-----------------------cccc
Confidence 9999999998 789999999875 99999 6678877776211 1111
Q ss_pred eEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccc---cCcccCCCC-ceeecEEEE
Q 000054 2445 MLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFL---QPSSRGFGG-VVRAGVTDI 2520 (2548)
Q Consensus 2445 ~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl---~~tl~GH~~-~V~a~VtsL 2520 (2548)
.....+.+|.+.|++++|+|++++|+|||.||+|+|||+++|+++.+++ .|...-.. ...+...+. .+...++++
T Consensus 280 ~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~-gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 358 (393)
T d1sq9a_ 280 QASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN-MHCDDIEIEEDILAVDEHGDSLAEPGVFDV 358 (393)
T ss_dssp ----CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCGGGCSSGGGCCCBCTTSCBCSSCCEEEE
T ss_pred cceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEEC-CcCCcccCCccEEEECCCCCEEEEcccceE
Confidence 2222347899999999999999999999999999999999999999984 33221100 001111111 112346777
Q ss_pred EEcCCe------------EEEEECCCcEEEEEC
Q 000054 2521 QVVSRG------------FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2521 afSPdG------------LaSGS~DGtIrIWDL 2541 (2548)
.|.+.+ +++++.|+.||+|+-
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~~ 391 (393)
T d1sq9a_ 359 KFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 391 (393)
T ss_dssp EEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred EECccCceeccccCCCCEEEEEEcCCeEEEEeC
Confidence 776642 889999999999974
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=4.4e-19 Score=211.91 Aligned_cols=234 Identities=14% Similarity=0.180 Sum_probs=167.5
Q ss_pred EEEEEEcC--CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC--CCcEEE
Q 000054 2222 TRAFSSHP--LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL--DGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSP--dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~--DGtVrV 2297 (2548)
+.+++|+| +|.+|++|+.||+|+|||+..++........... ....|.+.|.+++|+++++++++++. |+.+++
T Consensus 66 v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~--~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~ 143 (325)
T d1pgua1 66 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKS--EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVF 143 (325)
T ss_dssp EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEE--EEECCSSCEEEEEECTTSSEEEEEECCSSCSEEE
T ss_pred EEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeeccccc--ccccccCcEEEEEECCCCCccceeeccccceEEE
Confidence 68999998 5689999999999999999765543332211000 11235588999999999999988764 678999
Q ss_pred EEcCCCcccccccCccceeccCCcccEEE--EcCCCCE-EEEEeccCCCCeEEEEECCCCCCCc---ceeeeccCCCeEE
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSV-IAAAGHSSNGINVVVWDTLAPPTSS---RASITCHEGGARS 2371 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGsl-LATgG~SS~DGtVrIWDl~t~~~k~---v~sl~gHs~~VtS 2371 (2548)
|++++++.. ..+.+|...|.+ |++++.. +++++ .|+.|++||... .+. ......|...|++
T Consensus 144 ~~~~~~~~~--------~~~~~h~~~v~~~~~~~~~~~~~~~~~---~d~~v~~~d~~~--~~~~~~~~~~~~~~~~v~~ 210 (325)
T d1pgua1 144 ISWDSGNSL--------GEVSGHSQRINACHLKQSRPMRSMTVG---DDGSVVFYQGPP--FKFSASDRTHHKQGSFVRD 210 (325)
T ss_dssp EETTTCCEE--------EECCSCSSCEEEEEECSSSSCEEEEEE---TTTEEEEEETTT--BEEEEEECSSSCTTCCEEE
T ss_pred Eeecccccc--------eeeeecccccccccccccccceEEEee---cccccccccccc--cccceecccccCCCCccEE
Confidence 999877543 236788888864 8888765 55665 899999999864 232 2334467889999
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccC---CCCCC--ccCCCCCceE
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADA---QTGSG--SKPGDQNGML 2446 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafS---pdGk~--v~s~D~sv~I 2446 (2548)
++|+|+. +.++++|+.||.|++|| ..+++.+..+..+... .....++ ++|++ .++.|+.+++
T Consensus 211 v~~~pd~------~~~l~s~~~d~~i~iwd---~~~~~~~~~l~~~~~~----v~~~~~s~~~~dg~~l~s~s~D~~i~i 277 (325)
T d1pgua1 211 VEFSPDS------GEFVITVGSDRKISCFD---GKSGEFLKYIEDDQEP----VQGGIFALSWLDSQKFATVGADATIRV 277 (325)
T ss_dssp EEECSTT------CCEEEEEETTCCEEEEE---TTTCCEEEECCBTTBC----CCSCEEEEEESSSSEEEEEETTSEEEE
T ss_pred eeecccc------ceeccccccccceeeee---eccccccccccccccc----cccceeeeeccCCCEEEEEeCCCeEEE
Confidence 9999985 78999999999999999 5567777776321111 1112222 56765 6778899999
Q ss_pred EEccc--------CC--CCCEEEEEEeCC-CCEEEEEeCCCcEEEEEC
Q 000054 2447 WYIPK--------AH--LGSVTRISTVPN-TSLFLTGSKDGDVKLWDA 2483 (2548)
Q Consensus 2447 wdi~~--------gH--~~~VtsLafSPd-G~~LaSGS~DGtIrIWDl 2483 (2548)
|++.. .| ...+..+++.+. +.+|++||.||+|+|||+
T Consensus 278 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 278 WDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred EECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 98532 23 333444444443 358899999999999996
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=2.5e-18 Score=198.94 Aligned_cols=236 Identities=17% Similarity=0.225 Sum_probs=159.9
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEE
Q 000054 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVW 2349 (2548)
Q Consensus 2270 H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIW 2349 (2548)
|.+.|.+ +++++|++|+||+.||+|++||+.+++.. .++.+|...|.++..++.++++++ .|+.+++|
T Consensus 15 H~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~--------~~~~~h~~~V~~v~~~~~~l~s~s---~D~~~~~~ 82 (342)
T d2ovrb2 15 HDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCL--------RTLVGHTGGVWSSQMRDNIIISGS---TDRTLKVW 82 (342)
T ss_dssp STTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEE--------EECCCCSSCEEEEEEETTEEEEEE---TTSCEEEE
T ss_pred cCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEE--------EEEeCCCCCEEEEEeCCCccccce---eccccccc
Confidence 5577765 36667999999999999999999987643 347889999987444456899986 89999999
Q ss_pred ECCCCCCCcceeeeccCCCeEEEEEccCC---------------------------C----CCCCCCCEEEEEeCCCcEE
Q 000054 2350 DTLAPPTSSRASITCHEGGARSISVFDND---------------------------L----GSGSVSPLIVTGGKGGDVG 2398 (2548)
Q Consensus 2350 Dl~t~~~k~v~sl~gHs~~VtSLafsP~d---------------------------l----g~gs~g~lLVSGS~DGtVr 2398 (2548)
+.... ........+...+......+.. . ........+++++.|+.|+
T Consensus 83 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 160 (342)
T d2ovrb2 83 NAETG--ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK 160 (342)
T ss_dssp ETTTT--EEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEE
T ss_pred ccccc--cceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEE
Confidence 98642 1111111111121111111000 0 0000134678888899999
Q ss_pred EEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc--------ccCCCCCEEEEEEeCCCCE
Q 000054 2399 IHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI--------PKAHLGSVTRISTVPNTSL 2468 (2548)
Q Consensus 2399 LWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi--------~~gH~~~VtsLafSPdG~~ 2468 (2548)
+||. ...+.+..+... .........++.. +++.|+.+++|+. ..+|...|.+++++ +++
T Consensus 161 ~~d~---~~~~~~~~~~~~------~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~ 229 (342)
T d2ovrb2 161 VWDP---ETETCLHTLQGH------TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNI 229 (342)
T ss_dssp EEEG---GGTEEEEEECCC------SSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTE
T ss_pred Eeec---ccceeeEEEcCc------ccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCE
Confidence 9994 445555554211 1122334445555 6788899999984 34788899888775 469
Q ss_pred EEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEECCCcEEEEECCCCc
Q 000054 2469 FLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2469 LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS~DGtIrIWDL~sg~ 2545 (2548)
|++|+.||.|++||+...+....+.. ...|. ..+.++.++++.+++|+.||+|++||++++.
T Consensus 230 l~s~s~d~~i~iwd~~~~~~~~~~~~-----------~~~~~----~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~ 291 (342)
T d2ovrb2 230 LVSGNADSTVKIWDIKTGQCLQTLQG-----------PNKHQ----SAVTCLQFNKNFVITSSDDGTVKLWDLKTGE 291 (342)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECS-----------TTSCS----SCEEEEEECSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEEcCCCEEEEEecccccccccccc-----------cceee----eceeecccCCCeeEEEcCCCEEEEEECCCCC
Confidence 99999999999999999888876621 12333 2345668888779999999999999998874
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.80 E-value=2.1e-19 Score=212.00 Aligned_cols=257 Identities=12% Similarity=0.061 Sum_probs=179.8
Q ss_pred EEEcC-CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC--cEEEEEcC
Q 000054 2225 FSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG--TVCTWQLE 2301 (2548)
Q Consensus 2225 VsfSP-dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG--tVrVWDl~ 2301 (2548)
-.||| ||+++|+++ +|.|++||..++..... .|...|++++|+|||++|++++.+. .|++||++
T Consensus 8 ~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~------------~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~ 74 (360)
T d1k32a3 8 EDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV------------PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYR 74 (360)
T ss_dssp EEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC------------SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETT
T ss_pred ccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc------------cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECC
Confidence 46889 999999876 47999999988765432 2458899999999999998877653 89999998
Q ss_pred CCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
+++.. .+..|...+. +|+|+|+++++++ .++.+++|+... .+....+..|...+.+++|+|+
T Consensus 75 ~~~~~---------~~~~~~~~v~~~~~spdg~~l~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~spd-- 138 (360)
T d1k32a3 75 TGKAE---------KFEENLGNVFAMGVDRNGKFAVVAN---DRFEIMTVDLET--GKPTVIERSREAMITDFTISDN-- 138 (360)
T ss_dssp TCCEE---------ECCCCCCSEEEEEECTTSSEEEEEE---TTSEEEEEETTT--CCEEEEEECSSSCCCCEEECTT--
T ss_pred CCcEE---------EeeCCCceEEeeeecccccccceec---cccccccccccc--cceeeeeecccccccchhhccc--
Confidence 77532 2456777765 4999999999987 899999999976 5677788889999999999999
Q ss_pred CCCCCCCEEEEEe----------CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEE
Q 000054 2380 GSGSVSPLIVTGG----------KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLW 2447 (2548)
Q Consensus 2380 g~gs~g~lLVSGS----------~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iw 2447 (2548)
+++|+.++ .++.+++||+ .+++..... ..........++|+|+. .++.++.+.+|
T Consensus 139 -----g~~la~~~~~~~~~~~~~~~~~~~v~d~---~~~~~~~~~-----~~~~~~~~~~~spdg~~l~~~s~~~~~~~~ 205 (360)
T d1k32a3 139 -----SRFIAYGFPLKHGETDGYVMQAIHVYDM---EGRKIFAAT-----TENSHDYAPAFDADSKNLYYLSYRSLDPSP 205 (360)
T ss_dssp -----SCEEEEEEEECSSTTCSCCEEEEEEEET---TTTEEEECS-----CSSSBEEEEEECTTSCEEEEEESCCCCCEE
T ss_pred -----eeeeeeeccccccceeeccccceeeecc---ccCceeeec-----ccccccccccccCCCCEEEEEeCCCceEcc
Confidence 67887543 4557999995 344433322 01111233456666665 22333333444
Q ss_pred Ecc---------------------------------------------------cCCCCCEEEEEEeCCC----------
Q 000054 2448 YIP---------------------------------------------------KAHLGSVTRISTVPNT---------- 2466 (2548)
Q Consensus 2448 di~---------------------------------------------------~gH~~~VtsLafSPdG---------- 2466 (2548)
+.. ....+....+...+++
T Consensus 206 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (360)
T d1k32a3 206 DRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG 285 (360)
T ss_dssp CSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCC
T ss_pred cccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecC
Confidence 310 0011122233333322
Q ss_pred ---CEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEEC
Q 000054 2467 ---SLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQL 2541 (2548)
Q Consensus 2467 ---~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL 2541 (2548)
.++++++.++.|++||+.+++... + . ..|.+++|+||| |++++.||+|++||+
T Consensus 286 ~~~~~~~~~~~~~~i~~~d~~~~~~~~-~-----------------~----~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~ 343 (360)
T d1k32a3 286 EFAAYYQGAPEKGVLLKYDVKTRKVTE-V-----------------K----NNLTDLRLSADRKTVMVRKDDGKIYTFPL 343 (360)
T ss_dssp SHHHHHHCCCCCEEEEEEETTTCCEEE-E-----------------E----EEEEEEEECTTSCEEEEEETTSCEEEEES
T ss_pred CCeeEEEecCCCCEEEEEECCCCeEEE-e-----------------c----CCcCEEEECCCCCEEEEEECCCeEEEEEC
Confidence 345667778999999999876542 1 1 235778999999 999999999999999
Q ss_pred CCCc
Q 000054 2542 EDYQ 2545 (2548)
Q Consensus 2542 ~sg~ 2545 (2548)
+++.
T Consensus 344 ~~~~ 347 (360)
T d1k32a3 344 EKPE 347 (360)
T ss_dssp SCTT
T ss_pred CCCC
Confidence 8764
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=1.5e-18 Score=201.86 Aligned_cols=233 Identities=17% Similarity=0.259 Sum_probs=163.5
Q ss_pred CCCCe-EEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeE
Q 000054 2270 ALASI-SALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINV 2346 (2548)
Q Consensus 2270 H~~~V-tsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtV 2346 (2548)
|.+.| +|+.| ++++|+||+.||+|++||+.+++.+ ..+.+|...|.+ |+++ .++++++ .|++|
T Consensus 11 H~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~--------~~l~~H~~~V~~l~~s~~-~~l~s~s---~D~~i 76 (355)
T d1nexb2 11 HMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFL--------LQLSGHDGGVWALKYAHG-GILVSGS---TDRTV 76 (355)
T ss_dssp CSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEE--------EEEECCSSCEEEEEEETT-TEEEEEE---TTCCE
T ss_pred cCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEE--------EEEECCCCCEEEEEEcCC-CEEEEEe---ccccc
Confidence 54664 66665 5889999999999999999887543 347889998875 7765 5788886 89999
Q ss_pred EEEECCCCCCCcceeeeccC--CCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecC--------
Q 000054 2347 VVWDTLAPPTSSRASITCHE--GGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHS-------- 2416 (2548)
Q Consensus 2347 rIWDl~t~~~k~v~sl~gHs--~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~-------- 2416 (2548)
++|+... .+.......+. ..+....+.++ +..+++++.||.|++||++. +........
T Consensus 77 ~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~d~~i~iw~~~~---~~~~~~~~~~~~~~~~~ 144 (355)
T d1nexb2 77 RVWDIKK--GCCTHVFEGHNSTVRCLDIVEYKN-------IKYIVTGSRDNTLHVWKLPK---ESSVPDHGEEHDYPLVF 144 (355)
T ss_dssp EEEETTT--TEEEEEECCCSSCEEEEEEEEETT-------EEEEEEEETTSEEEEEECCC--------------CCCEEE
T ss_pred ccccccc--cccccccccccccccccccccccc-------cceeeeecCCCcEEEEEccC---Cceeccccccceeccce
Confidence 9999976 34433333333 33444555555 67899999999999999653 222211100
Q ss_pred --CCCCCC-------ccccccccCCCCCC--ccCCCCCceEEEcc--------cCCCCCEEEEEEeCCCCEEEEEeCCCc
Q 000054 2417 --DRGGSS-------INTCAHADAQTGSG--SKPGDQNGMLWYIP--------KAHLGSVTRISTVPNTSLFLTGSKDGD 2477 (2548)
Q Consensus 2417 --~~~~s~-------~~~~~vafSpdGk~--v~s~D~sv~Iwdi~--------~gH~~~VtsLafSPdG~~LaSGS~DGt 2477 (2548)
...... .........+++.. .+..++.+++|++. .++...+.++.++|++.++++++.||.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 224 (355)
T d1nexb2 145 HTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 224 (355)
T ss_dssp SCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred eccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccce
Confidence 000000 00011223344554 56677888899853 467889999999999999999999999
Q ss_pred EEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCeEEEEECCCcEEEEECCCCcc
Q 000054 2478 VKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRGFLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2478 IrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdGLaSGS~DGtIrIWDL~sg~l 2546 (2548)
|++||++++..+..+ .+|.+.| .+++++++.|++|+.||+|++||+.++..
T Consensus 225 i~i~d~~~~~~~~~~--------------~~h~~~v----~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 275 (355)
T d1nexb2 225 IRIWDLENGELMYTL--------------QGHTALV----GLLRLSDKFLVSAAADGSIRGWDANDYSR 275 (355)
T ss_dssp EEEEETTTCCEEEEE--------------CCCSSCC----CEEEECSSEEEEECTTSEEEEEETTTCCE
T ss_pred EEeeecccccccccc--------------ccccccc----cccccccceeeeeecccccccccccccce
Confidence 999999999998876 5676544 45678776688999999999999877643
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=2.2e-18 Score=198.44 Aligned_cols=255 Identities=13% Similarity=0.111 Sum_probs=164.1
Q ss_pred CCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCC-CCEEEEEeccCCCCe
Q 000054 2269 YALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSS-GSVIAAAGHSSNGIN 2345 (2548)
Q Consensus 2269 ~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpd-GslLATgG~SS~DGt 2345 (2548)
.|.+.|++|+|+|++++|++|+.||+|++||++++.... ......+|...|.+ |+++ +.++++|+ .|+.
T Consensus 9 ~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~-----~~~~~~~h~~~V~~v~f~~~~~~~l~sg~---~d~~ 80 (342)
T d1yfqa_ 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV-----DLLQSLRYKHPLLCCNFIDNTDLQIYVGT---VQGE 80 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE-----EEEEEEECSSCEEEEEEEESSSEEEEEEE---TTSC
T ss_pred CCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcce-----EEEEecCCCCCEEEEEEeCCCCCEEEEcc---cccc
Confidence 366999999999999999999999999999998664321 11223468888874 6665 45788876 8999
Q ss_pred EEEEECCCCCCCcceeeeccCCC-eEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcc
Q 000054 2346 VVVWDTLAPPTSSRASITCHEGG-ARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSIN 2424 (2548)
Q Consensus 2346 VrIWDl~t~~~k~v~sl~gHs~~-VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~ 2424 (2548)
|++|+... .........+... .....+.++ ...+++++.|+++++||++........... .........
T Consensus 81 v~~w~~~~--~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~-~~~~~~~~~ 150 (342)
T d1yfqa_ 81 ILKVDLIG--SPSFQALTNNEANLGICRICKYG-------DDKLIAASWDGLIEVIDPRNYGDGVIAVKN-LNSNNTKVK 150 (342)
T ss_dssp EEEECSSS--SSSEEECBSCCCCSCEEEEEEET-------TTEEEEEETTSEEEEECHHHHTTBCEEEEE-SCSSSSSSC
T ss_pred eeeeeccc--ccccccccccccccccccccccc-------cccccccccccccceeeccccccceeeecc-cccccccce
Confidence 99999976 3344444444433 334444444 569999999999999997642222222111 111111112
Q ss_pred ccccccCCCCCC--ccCCCCCceEEEccc-----------CCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCcEEE
Q 000054 2425 TCAHADAQTGSG--SKPGDQNGMLWYIPK-----------AHLGSVTRISTVP-NTSLFLTGSKDGDVKLWDAKAAQLVY 2490 (2548)
Q Consensus 2425 ~~~vafSpdGk~--v~s~D~sv~Iwdi~~-----------gH~~~VtsLafSP-dG~~LaSGS~DGtIrIWDl~Tgell~ 2490 (2548)
.....+.+++.. .+..++.+++|++.. .+...+.+..+.+ ++..+++++.||.+.+|+........
T Consensus 151 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~ 230 (342)
T d1yfqa_ 151 NKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY 230 (342)
T ss_dssp CCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCST
T ss_pred eeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCccee
Confidence 222333444443 677888999998532 2344566666555 67899999999999999987543221
Q ss_pred Eecccccccc-cccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2491 HWSKLHERHT-FLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2491 tL~~~Hs~hs-fl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.......... .......+|. ..|.+++|+|++ |+|||.||+|++||++++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~----~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~ 284 (342)
T d1yfqa_ 231 NSSKRFAFRCHRLNLKDTNLA----YPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK 284 (342)
T ss_dssp TCTTCEEEECCCCCTTCCSSC----CCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred eccccceeeeeeeccCCCccc----ccceeEEecCCccEEEEECCCCEEEEEECCCCc
Confidence 1100000000 0000113333 346788999999 9999999999999998864
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=4.4e-17 Score=184.07 Aligned_cols=224 Identities=18% Similarity=0.245 Sum_probs=161.1
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEE
Q 000054 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVW 2349 (2548)
Q Consensus 2270 H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIW 2349 (2548)
|...|+|+.| +|++|+||+.||+|++||+++++.. .++.+|...|.++++++++|++|+ .|+.|++|
T Consensus 14 ~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~--------~~l~~H~~~V~~v~~~~~~l~s~s---~D~~i~~~ 80 (293)
T d1p22a2 14 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECK--------RILTGHTGSVLCLQYDERVIITGS---SDSTVRVW 80 (293)
T ss_dssp SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEE--------EEECCCSSCEEEEECCSSEEEEEE---TTSCEEEE
T ss_pred CCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEE--------EEEecCCCCEeeeecccceeeccc---cccccccc
Confidence 5588998765 7999999999999999999887643 357899999999999999999987 89999999
Q ss_pred ECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccc
Q 000054 2350 DTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHA 2429 (2548)
Q Consensus 2350 Dl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~va 2429 (2548)
++.. .........+........ +. ...++++..++.+++||.+..........+ ..+ ........
T Consensus 81 ~~~~--~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~v~~~~ 145 (293)
T d1p22a2 81 DVNT--GEMLNTLIHHCEAVLHLR--FN-------NGMMVTCSKDRSIAVWDMASPTDITLRRVL---VGH-RAAVNVVD 145 (293)
T ss_dssp ESSS--CCEEEEECCCCSCEEEEE--CC-------TTEEEEEETTSCEEEEECSSSSCCEEEEEE---CCC-SSCEEEEE
T ss_pred cccc--cccccccccccccccccc--cc-------ccceeecccccceeEeeccccccccccccc---ccc-ccccccce
Confidence 9986 344444444444333333 22 348999999999999996532222222222 111 11122233
Q ss_pred cCCCCCCccCCCCCceEEEcc--------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccccccccc
Q 000054 2430 DAQTGSGSKPGDQNGMLWYIP--------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTF 2501 (2548)
Q Consensus 2430 fSpdGk~v~s~D~sv~Iwdi~--------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsf 2501 (2548)
+.++....++.|+.+++|+.. .+|...|..+.++ +.++++++.||+|++||+++++.+..+
T Consensus 146 ~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~--------- 214 (293)
T d1p22a2 146 FDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL--------- 214 (293)
T ss_dssp EETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE---------
T ss_pred ecccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeee---------
Confidence 344444467788889999853 4577778777764 679999999999999999999988766
Q ss_pred ccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCC
Q 000054 2502 LQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2502 l~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~s 2543 (2548)
.+|...+ .. +++++ |++|+.||.|++||+.+
T Consensus 215 -----~~~~~~v----~~--~~~~~~~l~sg~~dg~i~iwd~~~ 247 (293)
T d1p22a2 215 -----EGHEELV----RC--IRFDNKRIVSGAYDGKIKVWDLVA 247 (293)
T ss_dssp -----CCCSSCE----EE--EECCSSEEEEEETTSCEEEEEHHH
T ss_pred -----cccceee----ee--ccccceEEEEEcCCCEEEEEECCC
Confidence 4555444 22 44444 99999999999999753
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=7.1e-17 Score=186.51 Aligned_cols=210 Identities=12% Similarity=0.077 Sum_probs=155.3
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEE
Q 000054 2270 ALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVV 2347 (2548)
Q Consensus 2270 H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVr 2347 (2548)
|.+.|++++|+| |+||+.||+|++||+.++ ..+|...|.+ +++ +..+++++ .|++|+
T Consensus 12 H~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-------------~~~h~~~V~~~~~~~-~~~~~s~s---~D~~v~ 70 (287)
T d1pgua2 12 HNKGITALTVNP----LISGSYDGRIMEWSSSSM-------------HQDHSNLIVSLDNSK-AQEYSSIS---WDDTLK 70 (287)
T ss_dssp CSSCEEEEETTT----TEEEETTSCEEETTTTEE-------------ECCCCSCEEEEECCS-TTCCEEEE---TTTEEE
T ss_pred CCCceEEEEECc----EEEEeCCCeEEEEECCCC-------------CCCCCCCEEEEEecC-CCeEEEEe---eccccc
Confidence 669999999987 999999999999998754 3467777775 444 45677776 899999
Q ss_pred EEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccc
Q 000054 2348 VWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCA 2427 (2548)
Q Consensus 2348 IWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~ 2427 (2548)
+|++... .....+.++.+.++ + .++..+.++.+.+|+ ..+++.+..+... ...
T Consensus 71 ~w~~~~~---------~~~~~~~~~~~~~~-------~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-------~~~ 123 (287)
T d1pgua2 71 VNGITKH---------EFGSQPKVASANND-------G-FTAVLTNDDDLLILQ---SFTGDIIKSVRLN-------SPG 123 (287)
T ss_dssp ETTEEEE---------ECSSCEEEEEECSS-------S-EEEEEETTSEEEEEE---TTTCCEEEEEECS-------SCE
T ss_pred ccccccc---------ccccceeeeeeccC-------C-ceEEEeecccceeee---ccceeeeeecccc-------cee
Confidence 9997531 12345677887776 3 555556677889999 5566666665211 122
Q ss_pred cccCCCCCC--ccCCC-CCceEEEc---------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEeccc
Q 000054 2428 HADAQTGSG--SKPGD-QNGMLWYI---------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKL 2495 (2548)
Q Consensus 2428 vafSpdGk~--v~s~D-~sv~Iwdi---------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~ 2495 (2548)
.++++++.. ++..+ +.+++|++ ...|.+.|++++|+|++.+|++|+.||.|++||+.+++.....
T Consensus 124 ~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~--- 200 (287)
T d1pgua2 124 SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR--- 200 (287)
T ss_dssp EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC---
T ss_pred eeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccc---
Confidence 345556555 44444 45788874 2357889999999999999999999999999999998876533
Q ss_pred ccccccccCcccCCCCceeecEEEEEEcCCe------------EEEEECCCcEEEEECCCC
Q 000054 2496 HERHTFLQPSSRGFGGVVRAGVTDIQVVSRG------------FLSCGGDGSVKLIQLEDY 2544 (2548)
Q Consensus 2496 Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG------------LaSGS~DGtIrIWDL~sg 2544 (2548)
+.+|... |.+++|+|.+ ++||+.||+|++||++++
T Consensus 201 ----------~~~h~~~----v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~ 247 (287)
T d1pgua2 201 ----------WAFRTSK----INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 247 (287)
T ss_dssp ----------SCCCSSC----EEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred ----------ccccccc----cceeeecccccccccccCCCCeeEeecCCCeEEEEECCCC
Confidence 3677654 4667888743 889999999999999764
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.70 E-value=3.6e-15 Score=171.20 Aligned_cols=256 Identities=12% Similarity=0.076 Sum_probs=183.0
Q ss_pred EEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEE-EEeCCCcEEEEEcCCCcccccccCc
Q 000054 2234 FLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALDGTVCTWQLEVGGRSNVRPME 2312 (2548)
Q Consensus 2234 LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~La-SGS~DGtVrVWDl~tgk~i~i~p~~ 2312 (2548)
+++++.|++|.+||..+++.+.++.. .+.+..++|+|||++++ +++.++.|++||+.+++....
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~-----------g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~---- 69 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPV-----------GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT---- 69 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEEC-----------SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE----
T ss_pred EEEECCCCEEEEEECCCCeEEEEEEC-----------CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee----
Confidence 45678999999999999998888753 14578999999999874 667889999999998864322
Q ss_pred cceeccCCcccE-EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEE
Q 000054 2313 SCLCFSSHAMDV-SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTG 2391 (2548)
Q Consensus 2313 s~~t~~gH~~~V-~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSG 2391 (2548)
+..+.... ..+++++..+++++ ..++.+.+||... .+....+. +...+.++.++|+. ..+++++
T Consensus 70 ----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~dg------~~~~~~~ 134 (301)
T d1l0qa2 70 ----VPAGSSPQGVAVSPDGKQVYVTN--MASSTLSVIDTTS--NTVAGTVK-TGKSPLGLALSPDG------KKLYVTN 134 (301)
T ss_dssp ----EECSSSEEEEEECTTSSEEEEEE--TTTTEEEEEETTT--TEEEEEEE-CSSSEEEEEECTTS------SEEEEEE
T ss_pred ----eeccccccccccccccccccccc--cccceeeeccccc--ceeeeecc-ccccceEEEeecCC------Ceeeeee
Confidence 33333322 24889998777766 4789999999975 45555554 45677889999983 3355677
Q ss_pred eCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCC-CCceEEEccc-------CCCCCEEEEE
Q 000054 2392 GKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGD-QNGMLWYIPK-------AHLGSVTRIS 2461 (2548)
Q Consensus 2392 S~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D-~sv~Iwdi~~-------gH~~~VtsLa 2461 (2548)
..++.+.+|| ..+++.+..+... .....+.+++++.. ++..+ ....++.... .+...+..++
T Consensus 135 ~~~~~~~~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (301)
T d1l0qa2 135 NGDKTVSVIN---TVTKAVINTVSVG-----RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIA 206 (301)
T ss_dssp TTTTEEEEEE---TTTTEEEEEEECC-----SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEE
T ss_pred ccccceeeee---ccccceeeecccC-----CCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceee
Confidence 7889999999 5556666554211 12345677888776 33333 3334444221 2345678899
Q ss_pred EeCCCCEEEEEeC---CCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--E-EEEECCCc
Q 000054 2462 TVPNTSLFLTGSK---DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--F-LSCGGDGS 2535 (2548)
Q Consensus 2462 fSPdG~~LaSGS~---DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--L-aSGS~DGt 2535 (2548)
+++++..++.++. ++.|++||+.+++.+.+++ .+ ..+.+++|+||| + ++++.|++
T Consensus 207 ~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~--------------~~-----~~~~~va~spdg~~l~va~~~~~~ 267 (301)
T d1l0qa2 207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP--------------VG-----PDPAGIAVTPDGKKVYVALSFCNT 267 (301)
T ss_dssp ECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE--------------CC-----SSEEEEEECTTSSEEEEEETTTTE
T ss_pred ccccccccccccccceeeeeeeeecCCCeEEEEEc--------------CC-----CCEEEEEEeCCCCEEEEEECCCCe
Confidence 9999998876643 4689999999999988772 11 125678999999 4 68888999
Q ss_pred EEEEECCCCcc
Q 000054 2536 VKLIQLEDYQH 2546 (2548)
Q Consensus 2536 IrIWDL~sg~l 2546 (2548)
|++||++++.+
T Consensus 268 i~v~D~~t~~~ 278 (301)
T d1l0qa2 268 VSVIDTATNTI 278 (301)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEECCCCeE
Confidence 99999998753
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.69 E-value=3.7e-16 Score=193.49 Aligned_cols=297 Identities=9% Similarity=-0.023 Sum_probs=184.9
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEE-EeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFAS-AALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaS-GS~DGtVrVWDl 2300 (2548)
+..++|+|||+++++++.|++|++||+.+++.....+... ..+|.+.+.+++|+|||+++++ +..++++++||.
T Consensus 64 ~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~-----~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~ 138 (426)
T d1hzua2 64 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-----GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG 138 (426)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-----CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEET
T ss_pred eeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeC-----CCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcC
Confidence 5789999999999999999999999999887554433211 1234567788889999998755 458899999999
Q ss_pred CCCcccccccCccc----eeccCCccc--EEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000054 2301 EVGGRSNVRPMESC----LCFSSHAMD--VSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~----~t~~gH~~~--V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
.++........... ..+ .+... ....++++..++... ...+.+.+++.... .........+...+..+.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~s~d~~~~~~~~--~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 214 (426)
T d1hzua2 139 ETLEPKQIVSTRGMTVDTQTY-HPEPRVAAIIASHEHPEFIVNV--KETGKVLLVNYKDI-DNLTVTSIGAAPFLADGGW 214 (426)
T ss_dssp TTCCEEEEEECCEECSSSCCE-ESCCCEEEEEECSSSSEEEEEE--TTTTEEEEEECSSS-SSCEEEEEECCSSEEEEEE
T ss_pred CccceeEEeeccCCCccceee-cCCCceeEEEECCCCCEEEEec--CCCCeEEEEEeccc-cceeeEEeccCCccEeeeE
Confidence 98764432211000 001 11111 123667777766654 25667777776542 2223344467888999999
Q ss_pred ccCCCCCCCCCCEEEE-EeCCCcEEEEeCCccccCceeeeecCCCCCCCccc-----------cccccCCCCCC--ccCC
Q 000054 2375 FDNDLGSGSVSPLIVT-GGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINT-----------CAHADAQTGSG--SKPG 2440 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVS-GS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~-----------~~vafSpdGk~--v~s~ 2440 (2548)
+|+ +.++++ ...+..+.++| ..+++.+.............. .....+.++.. ....
T Consensus 215 ~~~-------g~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~ 284 (426)
T d1hzua2 215 DSS-------HRYFMTAANNSNKVAVID---SKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTD 284 (426)
T ss_dssp CTT-------SCEEEEEETTCSEEEEEE---TTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECC
T ss_pred CCC-------CcEEEeeeecccceeeee---cccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecc
Confidence 999 455554 45677899999 556666555422111110000 00111222222 1111
Q ss_pred CCC-----ceEEEcccCCCCCEEEEEEeCCCCEEEE-------EeCCCcEEEEECCCCcEEEEecccccccccccCcccC
Q 000054 2441 DQN-----GMLWYIPKAHLGSVTRISTVPNTSLFLT-------GSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRG 2508 (2548)
Q Consensus 2441 D~s-----v~Iwdi~~gH~~~VtsLafSPdG~~LaS-------GS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~G 2508 (2548)
... ..+-..+.+|...+..++|+|++++|++ ++.|++|+|||+++++...++.. +.... .+..
T Consensus 285 ~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~-~~~~~----~~~~ 359 (426)
T d1hzua2 285 PKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLP-IAEWA----DLGE 359 (426)
T ss_dssp TTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEEC-HHHHH----CCCS
T ss_pred ccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEec-cchhc----ccCC
Confidence 111 1222245689999999999999999994 56689999999999987765521 11000 0123
Q ss_pred CCCceeecEEEEEEcCCe---EEEE----ECCCcEEEEECCCCcc
Q 000054 2509 FGGVVRAGVTDIQVVSRG---FLSC----GGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2509 H~~~V~a~VtsLafSPdG---LaSG----S~DGtIrIWDL~sg~l 2546 (2548)
|.. .|..++||||| ++++ +.||+|+|||..+..+
T Consensus 360 ~~~----rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~ 400 (426)
T d1hzua2 360 GAK----RVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL 400 (426)
T ss_dssp SCC----CEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEE
T ss_pred CCc----cEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeE
Confidence 332 25677999999 4454 3578999999988753
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.68 E-value=6.6e-16 Score=181.73 Aligned_cols=242 Identities=11% Similarity=0.004 Sum_probs=167.7
Q ss_pred EEEEEEcCCCCEEEEEECCC--eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNT--HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DG--sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWD 2299 (2548)
+.+++|+|||++|++++.+. .|++||..+++..... .|.+.|.+++|+|+|++|++++.++.+.+|+
T Consensus 45 v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~-----------~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~ 113 (360)
T d1k32a3 45 IRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE-----------ENLGNVFAMGVDRNGKFAVVANDRFEIMTVD 113 (360)
T ss_dssp EEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC-----------CCCCSEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEee-----------CCCceEEeeeecccccccceecccccccccc
Confidence 68999999999998766553 7999999987654321 2558899999999999999999999999999
Q ss_pred cCCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEec-------cCCCCeEEEEECCCCCCCcceeeeccCCCeE
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGH-------SSNGINVVVWDTLAPPTSSRASITCHEGGAR 2370 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~-------SS~DGtVrIWDl~t~~~k~v~sl~gHs~~Vt 2370 (2548)
+.+++... .+..|...+ .+|+|+|++|+.++. ...++.+++||+.. .....+..|...+.
T Consensus 114 ~~~~~~~~--------~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~---~~~~~~~~~~~~~~ 182 (360)
T d1k32a3 114 LETGKPTV--------IERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG---RKIFAATTENSHDY 182 (360)
T ss_dssp TTTCCEEE--------EEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT---TEEEECSCSSSBEE
T ss_pred ccccceee--------eeecccccccchhhccceeeeeeeccccccceeeccccceeeecccc---Cceeeecccccccc
Confidence 98875432 233444433 459999999987531 12456799999975 23444556778899
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccc----cCceeeee--cCCCCC------------------CCc---
Q 000054 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIA----TGKTKKHK--HSDRGG------------------SSI--- 2423 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~----TGk~l~tl--~~~~~~------------------s~~--- 2423 (2548)
.+.|+|+ ++.|++++.|+.+++||..... ........ ...... ...
T Consensus 183 ~~~~spd-------g~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 255 (360)
T d1k32a3 183 APAFDAD-------SKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKR 255 (360)
T ss_dssp EEEECTT-------SCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGG
T ss_pred cccccCC-------CCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccc
Confidence 9999998 7899999999999999964211 01111111 000000 000
Q ss_pred ---------ccccc----------ccCCCCC---C--ccCCCCCceEEEccc----CCCCCEEEEEEeCCCCEEEEEeCC
Q 000054 2424 ---------NTCAH----------ADAQTGS---G--SKPGDQNGMLWYIPK----AHLGSVTRISTVPNTSLFLTGSKD 2475 (2548)
Q Consensus 2424 ---------~~~~v----------afSpdGk---~--v~s~D~sv~Iwdi~~----gH~~~VtsLafSPdG~~LaSGS~D 2475 (2548)
....+ .+...+. + .+..++.+++|+... .|.+.|.+++|+|||++|++++.|
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~v~~~~~SpDG~~l~~~~~D 335 (360)
T d1k32a3 256 SSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDD 335 (360)
T ss_dssp CEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEEEEEEEECTTSCEEEEEETT
T ss_pred eeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEecCCcCEEEECCCCCEEEEEECC
Confidence 00000 1111111 1 223344567888543 456789999999999999999999
Q ss_pred CcEEEEECCCCcEEEEe
Q 000054 2476 GDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2476 GtIrIWDl~Tgell~tL 2492 (2548)
|.|++||+++++...++
T Consensus 336 g~i~v~d~~~~~~~~~~ 352 (360)
T d1k32a3 336 GKIYTFPLEKPEDERTV 352 (360)
T ss_dssp SCEEEEESSCTTSCEEC
T ss_pred CeEEEEECCCCCcceEE
Confidence 99999999998877665
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.67 E-value=7.8e-15 Score=170.46 Aligned_cols=264 Identities=9% Similarity=0.036 Sum_probs=177.7
Q ss_pred CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEE-EEEeCCCcEEEEEcCCCccccccc
Q 000054 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTWQLEVGGRSNVRP 2310 (2548)
Q Consensus 2232 ~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~L-aSGS~DGtVrVWDl~tgk~i~i~p 2310 (2548)
+|+++++.|++|+|||..+++.+..+.... +...+.+++|+|||+++ ++++.|+.|.+||+.+++......
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~--------~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~ 73 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIAD--------AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRID 73 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTT--------CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCC--------CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence 589999999999999999999988875421 23557889999999987 466789999999999886543221
Q ss_pred CccceeccCCcccEEEEcCCCCEEEEEecc---------CCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCC
Q 000054 2311 MESCLCFSSHAMDVSYITSSGSVIAAAGHS---------SNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGS 2381 (2548)
Q Consensus 2311 ~~s~~t~~gH~~~V~afSpdGslLATgG~S---------S~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~ 2381 (2548)
....... .....-..++|+++.+++++.. ..+..+.+||... .+....+. +...+..+.++|+
T Consensus 74 ~~~~~~~-~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~-~~~~~~~~~~s~d---- 145 (337)
T d1pbyb_ 74 LSTPEER-VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET--LSRRKAFE-APRQITMLAWARD---- 145 (337)
T ss_dssp CCBTTEE-EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT--TEEEEEEE-CCSSCCCEEECTT----
T ss_pred cCCCccc-ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccC--CeEEEecc-ccCCceEEEEcCC----
Confidence 1000000 0001113589999998877521 1357888999876 45555554 4566888999998
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC-------------------------
Q 000054 2382 GSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG------------------------- 2436 (2548)
Q Consensus 2382 gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~------------------------- 2436 (2548)
+.++++++. .+.+|| ..+++....+..... .....+++++..
T Consensus 146 ---g~~l~~~~~--~~~~~d---~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (337)
T d1pbyb_ 146 ---GSKLYGLGR--DLHVMD---PEAGTLVEDKPIQSW-----EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPA 212 (337)
T ss_dssp ---SSCEEEESS--SEEEEE---TTTTEEEEEECSTTT-----TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTT
T ss_pred ---CCEEEEEcC--Ccceee---eecCcEEEEeecCCc-----cccceecCCcceeeccccccceeeeeeeeeeecccee
Confidence 678888764 477899 556666655422111 111122222221
Q ss_pred -ccCCCCCceEEEcc---------cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcc
Q 000054 2437 -SKPGDQNGMLWYIP---------KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSS 2506 (2548)
Q Consensus 2437 -v~s~D~sv~Iwdi~---------~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl 2506 (2548)
....+..+.+|+.. ..+...+..++++|++.+++++ ++.|++||+.+++.+.++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~------------- 277 (337)
T d1pbyb_ 213 DPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP------------- 277 (337)
T ss_dssp SGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE-------------
T ss_pred eecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEc-------------
Confidence 11112223444432 2356677888899999988766 5899999999999998773
Q ss_pred cCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2507 RGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2507 ~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.++ .+.+++|+||| +++++.||+|++||+++..
T Consensus 278 ~~~------~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~ 312 (337)
T d1pbyb_ 278 LPH------SYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp CSS------CCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred CCC------CEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 111 24567999999 8899999999999998764
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.66 E-value=4.5e-15 Score=173.13 Aligned_cols=270 Identities=10% Similarity=0.004 Sum_probs=178.6
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEE-EEeCCCcEEEEEcCCC
Q 000054 2225 FSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFA-SAALDGTVCTWQLEVG 2303 (2548)
Q Consensus 2225 VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~La-SGS~DGtVrVWDl~tg 2303 (2548)
++++++++++++++.|++|.+||+.+++.+.++... |...+.+++|+|||++++ ++..++.|.+||+.++
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~---------~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~ 72 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMP---------DKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC 72 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECS---------SCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcC---------CCCCcceEEECCCCCEEEEEECCCCcEEEEeCccC
Confidence 356799999999999999999999999998887531 225678999999999874 5567899999999988
Q ss_pred cccccccCccceeccCCc--ccEEEEcCCCCEEEEEecc---------CCCCeEEEEECCCCCCCcceeeec--cCCCeE
Q 000054 2304 GRSNVRPMESCLCFSSHA--MDVSYITSSGSVIAAAGHS---------SNGINVVVWDTLAPPTSSRASITC--HEGGAR 2370 (2548)
Q Consensus 2304 k~i~i~p~~s~~t~~gH~--~~V~afSpdGslLATgG~S---------S~DGtVrIWDl~t~~~k~v~sl~g--Hs~~Vt 2370 (2548)
+......... ....+. ..-..++|||+.+++++.. ..++.+.+||..+ ++....+.. ....+.
T Consensus 73 ~~~~~~~~~~--~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~ 148 (346)
T d1jmxb_ 73 KNTFHANLSS--VPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD--GLEAKPVRTFPMPRQVY 148 (346)
T ss_dssp EEEEEEESCC--STTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG--GGGBCCSEEEECCSSCC
T ss_pred eeeeeecccc--cccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccc--ceeeeEEEeeeccCceE
Confidence 6443211100 000000 1113589999988776410 1467889999865 333333222 234455
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCcc---CCCC-----
Q 000054 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSK---PGDQ----- 2442 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~---s~D~----- 2442 (2548)
.+.+.++ +.++++ ++.+.+|| ..+++.+..+.... ......++|++..+. ..++
T Consensus 149 ~~~~~~~-------~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (346)
T d1jmxb_ 149 LMRAADD-------GSLYVA---GPDIYKMD---VKTGKYTVALPLRN-----WNRKGYSAPDVLYFWPHQSPRHEFSML 210 (346)
T ss_dssp CEEECTT-------SCEEEE---SSSEEEEC---TTTCCEEEEECSTT-----CCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred EEEecCC-------CEEEEe---CCcceEEE---ccCCCEEEEEecCC-----CccceEEeccccEEEEEecCCCceEee
Confidence 5665555 445544 35689999 55677766652211 123344555555411 1111
Q ss_pred --------------------CceEEEc---------ccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000054 2443 --------------------NGMLWYI---------PKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2443 --------------------sv~Iwdi---------~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
.+.+|+. ...|...+..+.+++++.+++.+. ++.|++||..+++.+..++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~ 289 (346)
T d1jmxb_ 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAAN 289 (346)
T ss_dssp EEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEE
T ss_pred eeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEc
Confidence 1233432 224677888899999888887765 4589999999999988773
Q ss_pred ccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECCCCc
Q 000054 2494 KLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2494 ~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.+| .+.+++|+||| +++++.||.|++||++++.
T Consensus 290 -------------~~~------~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~ 324 (346)
T d1jmxb_ 290 -------------LDH------TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE 324 (346)
T ss_dssp -------------CSS------CCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred -------------CCC------CEEEEEEcCCCCEEEEEeCCCcEEEEECccCC
Confidence 222 24577999999 8899999999999998864
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.58 E-value=7e-15 Score=183.73 Aligned_cols=296 Identities=8% Similarity=-0.030 Sum_probs=176.0
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCcee--EEEeccCCCCCCCCCCCCCeEEEEEccCCCEE-EEEeCCCcEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKAT--ATYGVLPAANVPPPYALASISALQFDHYGHRF-ASAALDGTVCTW 2298 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l--~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~L-aSGS~DGtVrVW 2298 (2548)
+..++|+|||+++++++.||+|++||+.+++.. ..+... ..|.+.+.+..|+|||+++ ++++.+++|++|
T Consensus 64 ~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~-------~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~ 136 (432)
T d1qksa2 64 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG-------SEARSIETSKMEGWEDKYAIAGAYWPPQYVIM 136 (432)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC-------SEEEEEEECCSTTCTTTEEEEEEEETTEEEEE
T ss_pred eeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecC-------CCCCCeEEecccCCCCCEEEEEcCCCCeEEEE
Confidence 688999999999999999999999999887643 333321 1244667777888999986 678889999999
Q ss_pred EcCCCcccccccCccce---eccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee-ccCCCeEEE
Q 000054 2299 QLEVGGRSNVRPMESCL---CFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT-CHEGGARSI 2372 (2548)
Q Consensus 2299 Dl~tgk~i~i~p~~s~~---t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~-gHs~~VtSL 2372 (2548)
|.++++.....+..... ....+..... .++++|..++.+. +.++.|.+||... .+...... .+...+..+
T Consensus 137 d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~--~~~~~i~~~d~~~--~~~~~~~~i~~g~~~~~~ 212 (432)
T d1qksa2 137 DGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV--KETGKILLVDYTD--LNNLKTTEISAERFLHDG 212 (432)
T ss_dssp ETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE--TTTTEEEEEETTC--SSEEEEEEEECCSSEEEE
T ss_pred eCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEE--ccCCeEEEEEccC--CCcceEEEEcccCccccc
Confidence 99988654322110000 0011222222 4789998877665 4789999999875 33322222 355678999
Q ss_pred EEccCCCCCCCCCCEEEEEe-CCCcEEEEeCCccccCceeeeecCCCCCC-CccccccccCCCCCC---ccCCCCCceEE
Q 000054 2373 SVFDNDLGSGSVSPLIVTGG-KGGDVGIHDFRYIATGKTKKHKHSDRGGS-SINTCAHADAQTGSG---SKPGDQNGMLW 2447 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS-~DGtVrLWDLR~l~TGk~l~tl~~~~~~s-~~~~~~vafSpdGk~---v~s~D~sv~Iw 2447 (2548)
.++|+ ++++++++ .++.|.++|. .+++.+.......... ............+.. ...+++.+.+|
T Consensus 213 ~~spd-------g~~~~va~~~~~~v~v~d~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~ 282 (432)
T d1qksa2 213 GLDGS-------HRYFITAANARNKLVVIDT---KEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALI 282 (432)
T ss_dssp EECTT-------SCEEEEEEGGGTEEEEEET---TTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEE
T ss_pred eECCC-------CCEEEEeccccceEEEeec---ccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEec
Confidence 99999 66665555 5668899994 4455544431111110 001111112222222 22334555666
Q ss_pred Ecc----cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc-------EEEEeccccccccccc-------------
Q 000054 2448 YIP----KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQ-------LVYHWSKLHERHTFLQ------------- 2503 (2548)
Q Consensus 2448 di~----~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tge-------ll~tL~~~Hs~hsfl~------------- 2503 (2548)
... ..|...|....+.|++..+++++.|.+.++|+..+.. .+....+ ..+..
T Consensus 283 ~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg----~~la~~s~d~~~k~w~~~ 358 (432)
T d1qksa2 283 GTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDI----KAMTGDGSDPEFKTLPIA 358 (432)
T ss_dssp ECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEG----GGCCCSSSCCCEEEECHH
T ss_pred ccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEEEec----hhhcccccCCceEecccc
Confidence 532 2355566777777777777777777777777654321 1111110 00000
Q ss_pred --CcccCCCCceeecEEEEEEcCCe--E-EEEE----CCCcEEEEECCCCcc
Q 000054 2504 --PSSRGFGGVVRAGVTDIQVVSRG--F-LSCG----GDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2504 --~tl~GH~~~V~a~VtsLafSPdG--L-aSGS----~DGtIrIWDL~sg~l 2546 (2548)
..+..|.. .|..++||||| + ++.. .||.|+|||..+..+
T Consensus 359 ~~~~l~~~~~----~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~ 406 (432)
T d1qksa2 359 EWAGITEGQP----RVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL 406 (432)
T ss_dssp HHHTCCSSCC----EEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred cccccCCCCC----cEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence 00122332 25678999999 4 3432 468899999988754
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.57 E-value=2.9e-14 Score=176.33 Aligned_cols=259 Identities=12% Similarity=0.013 Sum_probs=163.5
Q ss_pred CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccC
Q 000054 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPM 2311 (2548)
Q Consensus 2232 ~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~ 2311 (2548)
.++++.+.||+|+|||..+++.+.++.. | ..+..++|+|||+++++++.||+|++||+.+++.....
T Consensus 33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~----------g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~-- 99 (426)
T d1hzua2 33 LFSVTLRDAGQIALVDGDSKKIVKVIDT----------G-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA-- 99 (426)
T ss_dssp EEEEEETTTTEEEEEETTTCSEEEEEEC----------C-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE--
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeC----------C-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEE--
Confidence 3567788999999999999999988853 2 45899999999999999999999999999988643221
Q ss_pred ccceeccCCcccEEE--EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEE
Q 000054 2312 ESCLCFSSHAMDVSY--ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIV 2389 (2548)
Q Consensus 2312 ~s~~t~~gH~~~V~a--fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLV 2389 (2548)
......+|...+.+ ++|||+++++++ ..++.+++||... ...+..+..|...+....+.++. ....+
T Consensus 100 -~i~~~~~~~~~~~s~~~spDG~~l~v~~--~~~~~v~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~~i 168 (426)
T d1hzua2 100 -EIKIGIEARSVESSKFKGYEDRYTIAGA--YWPPQFAIMDGET--LEPKQIVSTRGMTVDTQTYHPEP------RVAAI 168 (426)
T ss_dssp -EEECCSEEEEEEECCSTTCTTTEEEEEE--EESSEEEEEETTT--CCEEEEEECCEECSSSCCEESCC------CEEEE
T ss_pred -EEeCCCCCcceEEeeeecCCCCEEEEee--cCCCeEEEEcCCc--cceeEEeeccCCCccceeecCCC------ceeEE
Confidence 11223345444443 789999887765 3789999999986 56677777776666666665552 23455
Q ss_pred EEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEE
Q 000054 2390 TGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLF 2469 (2548)
Q Consensus 2390 SGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~L 2469 (2548)
.++.|+...++..+ .++...... .... ....+. ..++...+..++|+|+++++
T Consensus 169 ~~s~d~~~~~~~~~--~~~~i~~~~-~~~~----------------------~~~~~~--~~~~~~~~~~~~~~~~g~~~ 221 (426)
T d1hzua2 169 IASHEHPEFIVNVK--ETGKVLLVN-YKDI----------------------DNLTVT--SIGAAPFLADGGWDSSHRYF 221 (426)
T ss_dssp EECSSSSEEEEEET--TTTEEEEEE-CSSS----------------------SSCEEE--EEECCSSEEEEEECTTSCEE
T ss_pred EECCCCCEEEEecC--CCCeEEEEE-eccc----------------------cceeeE--EeccCCccEeeeECCCCcEE
Confidence 56666666555532 111111110 0000 000000 12355566677777777766
Q ss_pred EEEeC-CCcEEEEECCCCcEEEEeccccccc--------------c--------------------------cccCcccC
Q 000054 2470 LTGSK-DGDVKLWDAKAAQLVYHWSKLHERH--------------T--------------------------FLQPSSRG 2508 (2548)
Q Consensus 2470 aSGS~-DGtIrIWDl~Tgell~tL~~~Hs~h--------------s--------------------------fl~~tl~G 2508 (2548)
+++.. +..+.+++..+++.+..+......+ . -...++.+
T Consensus 222 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g 301 (426)
T d1hzua2 222 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQG 301 (426)
T ss_dssp EEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred EeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEec
Confidence 66654 4456777777766665443100000 0 00112456
Q ss_pred CCCceeecEEEEEEcCCe--EE-------EEECCCcEEEEECCCCc
Q 000054 2509 FGGVVRAGVTDIQVVSRG--FL-------SCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2509 H~~~V~a~VtsLafSPdG--La-------SGS~DGtIrIWDL~sg~ 2545 (2548)
|+..+ ..++|+|+| ++ +++.|++|++||++++.
T Consensus 302 ~~~~v----~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~ 343 (426)
T d1hzua2 302 QGGGS----LFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD 343 (426)
T ss_dssp SSSCC----CCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTT
T ss_pred CCCce----eEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCC
Confidence 65444 556999999 55 35668999999998764
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.52 E-value=1.5e-12 Score=149.16 Aligned_cols=233 Identities=9% Similarity=0.049 Sum_probs=166.2
Q ss_pred EEEEEEcCCCCEEE-EEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEE-EeCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFL-VGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFAS-AALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LA-SGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaS-GS~DGtVrVWD 2299 (2548)
...++|+|+|++++ +++.++.|++||+.+++.+..+.. + ..+..++|++++..+++ +..++.+.+|+
T Consensus 34 p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (301)
T d1l0qa2 34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA----------G-SSPQGVAVSPDGKQVYVTNMASSTLSVID 102 (301)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC----------S-SSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec----------c-ccccccccccccccccccccccceeeecc
Confidence 47889999999875 667899999999999998887743 1 45789999999886654 56678999999
Q ss_pred cCCCcccccccCccceeccCCccc-EEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCC
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMD-VSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~-V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
..+++.... +..+... ...++|+|..++.++ +.++.+.+|+..+ ...+..+. +...+..+.++|+
T Consensus 103 ~~~~~~~~~--------~~~~~~~~~~~~~~dg~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~- 168 (301)
T d1l0qa2 103 TTSNTVAGT--------VKTGKSPLGLALSPDGKKLYVTN--NGDKTVSVINTVT--KAVINTVS-VGRSPKGIAVTPD- 168 (301)
T ss_dssp TTTTEEEEE--------EECSSSEEEEEECTTSSEEEEEE--TTTTEEEEEETTT--TEEEEEEE-CCSSEEEEEECTT-
T ss_pred cccceeeee--------ccccccceEEEeecCCCeeeeee--ccccceeeeeccc--cceeeecc-cCCCceEEEeecc-
Confidence 987753321 2333332 235899999887766 4789999999976 44455544 4456889999998
Q ss_pred CCCCCCCCEEEEEe-CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--cc---CCCCCceEEEccc-
Q 000054 2379 LGSGSVSPLIVTGG-KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SK---PGDQNGMLWYIPK- 2451 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS-~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~---s~D~sv~Iwdi~~- 2451 (2548)
+..+++++ .++.+.+|+. ...+........ ......++++++.. ++ ..++.+.+||...
T Consensus 169 ------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~ 234 (301)
T d1l0qa2 169 ------GTKVYVANFDSMSISVIDT---VTNSVIDTVKVE-----AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN 234 (301)
T ss_dssp ------SSEEEEEETTTTEEEEEET---TTTEEEEEEECS-----SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred ------ccceeeecccccccccccc---cceeeeeccccc-----CCcceeeccccccccccccccceeeeeeeeecCCC
Confidence 45555555 4567778873 334443333111 11234667888876 22 3345688888543
Q ss_pred ------CCCCCEEEEEEeCCCCEE-EEEeCCCcEEEEECCCCcEEEEec
Q 000054 2452 ------AHLGSVTRISTVPNTSLF-LTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2452 ------gH~~~VtsLafSPdG~~L-aSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
.+...+.+++|+|+|++| ++++.|++|++||+++++++.+++
T Consensus 235 ~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 235 KITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 234578999999999976 577789999999999999999884
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=4e-13 Score=156.54 Aligned_cols=276 Identities=8% Similarity=0.041 Sum_probs=167.8
Q ss_pred EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe-CCCcEEEEEcCCCcccccccC
Q 000054 2233 FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LDGTVCTWQLEVGGRSNVRPM 2311 (2548)
Q Consensus 2233 ~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS-~DGtVrVWDl~tgk~i~i~p~ 2311 (2548)
.+++++.|++|++|++++...+..++... |.+.|..|+|+|||++|++++ .|+.|++|++.........
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~--------~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~-- 75 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVD--------VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF-- 75 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEE--------CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE--
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEc--------CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEE--
Confidence 45778899999999998654444433222 347899999999999986555 5899999999865422110
Q ss_pred ccceeccCCcc-cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEE
Q 000054 2312 ESCLCFSSHAM-DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVT 2390 (2548)
Q Consensus 2312 ~s~~t~~gH~~-~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVS 2390 (2548)
......... .-.+++|||+++++++ ..++.|.+|+..............+...+.++.++|+ ++.+++
T Consensus 76 --~~~~~~~~~p~~l~~spDg~~l~v~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d-------~~~~~~ 144 (333)
T d1ri6a_ 76 --AAESALPGSLTHISTDHQGQFVFVGS--YNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPD-------NRTLWV 144 (333)
T ss_dssp --EEEEECSSCCSEEEECTTSSEEEEEE--TTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTT-------SSEEEE
T ss_pred --eeecccCCCceEEEEcCCCCEEeecc--cCCCceeeeccccccceecccccCCCccceEEEeeec-------ceeeec
Confidence 000111111 1235999999999986 3688999999865322233344466778889999998 566666
Q ss_pred Ee-CCCcEEEEeCCccccCceeeee-cCCCCCCCccccccccCCCCCC---ccCCCCCceEEEcc---------------
Q 000054 2391 GG-KGGDVGIHDFRYIATGKTKKHK-HSDRGGSSINTCAHADAQTGSG---SKPGDQNGMLWYIP--------------- 2450 (2548)
Q Consensus 2391 GS-~DGtVrLWDLR~l~TGk~l~tl-~~~~~~s~~~~~~vafSpdGk~---v~s~D~sv~Iwdi~--------------- 2450 (2548)
++ .+..|.+|+... ........ .............+++++++.. .....+...+++..
T Consensus 145 ~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 222 (333)
T d1ri6a_ 145 PALKQDRICLFTVSD--DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMM 222 (333)
T ss_dssp EEGGGTEEEEEEECT--TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECS
T ss_pred cccccceeeEEEecc--CCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeee
Confidence 55 566799999542 11111111 0001111122345677787776 22233333444321
Q ss_pred ---cCCCCCEEEEEEeCCCCEEEEE-eCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe
Q 000054 2451 ---KAHLGSVTRISTVPNTSLFLTG-SKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG 2526 (2548)
Q Consensus 2451 ---~gH~~~VtsLafSPdG~~LaSG-S~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG 2526 (2548)
.........+++++++++++.. ..++.+.+|++............ ..+++ .+.+++|+|||
T Consensus 223 ~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~----~p~~~a~spDG 287 (333)
T d1ri6a_ 223 PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF-----------QPTET----QPRGFNVDHSG 287 (333)
T ss_dssp CTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE-----------EECSS----SCCCEEECTTS
T ss_pred ecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEE-----------eCCCC----CeeEEEEeCCC
Confidence 1233466788999999877665 45789999998754433322100 11111 13456999999
Q ss_pred --EE-EEECCCcEEEEEC--CCCcc
Q 000054 2527 --FL-SCGGDGSVKLIQL--EDYQH 2546 (2548)
Q Consensus 2527 --La-SGS~DGtIrIWDL--~sg~l 2546 (2548)
|+ +++.+++|++|++ ++|.+
T Consensus 288 k~l~va~~~~~~v~v~~id~~tG~l 312 (333)
T d1ri6a_ 288 KYLIAAGQKSHHISVYEIVGEQGLL 312 (333)
T ss_dssp SEEEEECTTTCEEEEEEEETTTTEE
T ss_pred CEEEEEECCCCeEEEEEEECCCCcE
Confidence 44 4556799999955 45543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.48 E-value=4.9e-12 Score=150.81 Aligned_cols=277 Identities=11% Similarity=-0.001 Sum_probs=173.2
Q ss_pred EEEEEEcCCCCEEEEE-----ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe------
Q 000054 2222 TRAFSSHPLRPFFLVG-----SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA------ 2290 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASG-----S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS------ 2290 (2548)
+..++++|+|+.+++. +.++.|.+||..+++.+.++.. +....++|+|||++++++.
T Consensus 23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~------------~~~~~~a~SpDG~~l~va~~~~~~~ 90 (373)
T d2madh_ 23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG------------GFLPNPVAAHSGSEFALASTSFSRI 90 (373)
T ss_pred ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeC------------CCCccEEEcCCCCEEEEEeecCCcc
Confidence 3666788999988753 3456799999999998887642 2233699999999999875
Q ss_pred ----CCCcEEEEEcCCCcccccccCccce--eccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeec
Q 000054 2291 ----LDGTVCTWQLEVGGRSNVRPMESCL--CFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC 2364 (2548)
Q Consensus 2291 ----~DGtVrVWDl~tgk~i~i~p~~s~~--t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g 2364 (2548)
.++.|.+||..+++........... ....+. .-..++++++.++..... .++.+.+|+... . ....
T Consensus 91 ~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~-~~~~~s~dg~~~~v~~~~-~~~~~~~~~~~~--~----~~~~ 162 (373)
T d2madh_ 91 AKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS-WMNANTPNNADLLFFQFA-AGPAVGLVVQGG--S----SDDQ 162 (373)
T ss_pred cccccceEEEEEECCCCcEEEEEecCCcceeEeccCC-CcEEEEeCCCcEEEEEEc-CCCceEEeeccC--C----eEEE
Confidence 4578999999988643321110000 001111 112477888866654322 567788888764 2 2234
Q ss_pred cCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecC--CCCCCCccccccccCCCCCC-ccCCC
Q 000054 2365 HEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHS--DRGGSSINTCAHADAQTGSG-SKPGD 2441 (2548)
Q Consensus 2365 Hs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~--~~~~s~~~~~~vafSpdGk~-v~s~D 2441 (2548)
+.....++.++|+. ...+++.+.||.+.+||. ..++....... .............+.+++.. ....+
T Consensus 163 ~~~~~~~~~~s~~g------~~~~v~~~~dg~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (373)
T d2madh_ 163 LLSSPTCYHIHPGA------PSTFYLLCAQGGLAKTDH---AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYS 233 (373)
T ss_pred EeccceeEEEecCC------CcEEEEEcCCCeEEEEEc---CCceeeEEEeeeccccCccceeeeEEECCCceEEEecCC
Confidence 44566788888884 457789999999999994 44444433311 11111222233344555544 23344
Q ss_pred CCceEEEcc----------cCCC----------CCEEEEEEeCCCCEE----------EEEeCCCcEEEEECCCCcEEEE
Q 000054 2442 QNGMLWYIP----------KAHL----------GSVTRISTVPNTSLF----------LTGSKDGDVKLWDAKAAQLVYH 2491 (2548)
Q Consensus 2442 ~sv~Iwdi~----------~gH~----------~~VtsLafSPdG~~L----------aSGS~DGtIrIWDl~Tgell~t 2491 (2548)
+.+.+|+.. ..+. .....++++|++..+ ++...++.|.+||..+++.+..
T Consensus 234 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~ 313 (373)
T d2madh_ 234 GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQ 313 (373)
T ss_pred ceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEE
Confidence 444554421 1111 123345566665543 4556677899999999999887
Q ss_pred ecccccccccccCcccCCCCceeecEEEEEEcCCe----EEEEECCCcEEEEECCCCcc
Q 000054 2492 WSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG----FLSCGGDGSVKLIQLEDYQH 2546 (2548)
Q Consensus 2492 L~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG----LaSGS~DGtIrIWDL~sg~l 2546 (2548)
+. ++ ..+..++|+||| +++++.|++|++||+.++..
T Consensus 314 ~~---------------~~----~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~ 353 (373)
T d2madh_ 314 IS---------------LG----HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred ec---------------CC----CCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence 62 11 124677999998 46899999999999998753
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.47 E-value=3.6e-12 Score=158.94 Aligned_cols=199 Identities=14% Similarity=0.045 Sum_probs=145.4
Q ss_pred EEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCc
Q 000054 2233 FFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPME 2312 (2548)
Q Consensus 2233 ~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~ 2312 (2548)
++++.+.||+|.|||..+++.+..+.. | ..+..++|+|||+++++++.||+|++||+.+++.....
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~----------g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~--- 99 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDT----------G-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA--- 99 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEEC----------S-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE---
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeC----------C-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEE---
Confidence 457889999999999999999999853 2 46999999999999999999999999999887532211
Q ss_pred cceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeec-----------cCCCeEEEEEccCCC
Q 000054 2313 SCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC-----------HEGGARSISVFDNDL 2379 (2548)
Q Consensus 2313 s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g-----------Hs~~VtSLafsP~dl 2379 (2548)
......+|...+. .++|||+++++++ +.++.|++||..+ .+++..+.. +.+....+.++|++
T Consensus 100 ~i~~~~~~~~~~~s~~~SpDG~~l~vs~--~~~~~v~i~d~~t--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg- 174 (432)
T d1qksa2 100 EIKIGSEARSIETSKMEGWEDKYAIAGA--YWPPQYVIMDGET--LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR- 174 (432)
T ss_dssp EEECCSEEEEEEECCSTTCTTTEEEEEE--EETTEEEEEETTT--CCEEEEEECCEECTTTCCEESCCCEEEEEECSSS-
T ss_pred EEecCCCCCCeEEecccCCCCCEEEEEc--CCCCeEEEEeCcc--ccceeeeccCCccccceeccCCCceeEEEECCCC-
Confidence 1112234444444 2789999875544 3799999999986 555555443 34556678888873
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR 2459 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts 2459 (2548)
..++++...++.|.+||. .+++..... .+ .+...+..
T Consensus 175 -----~~~~vs~~~~~~i~~~d~---~~~~~~~~~---------------------------------~i--~~g~~~~~ 211 (432)
T d1qksa2 175 -----PEFIVNVKETGKILLVDY---TDLNNLKTT---------------------------------EI--SAERFLHD 211 (432)
T ss_dssp -----SEEEEEETTTTEEEEEET---TCSSEEEEE---------------------------------EE--ECCSSEEE
T ss_pred -----CEEEEEEccCCeEEEEEc---cCCCcceEE---------------------------------EE--cccCcccc
Confidence 345677778899999993 344433221 11 24456789
Q ss_pred EEEeCCCCEEEEEeC-CCcEEEEECCCCcEEEEec
Q 000054 2460 ISTVPNTSLFLTGSK-DGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2460 LafSPdG~~LaSGS~-DGtIrIWDl~Tgell~tL~ 2493 (2548)
++|+|+|+++++++. ++.+.++|..+++.+..+.
T Consensus 212 ~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~ 246 (432)
T d1qksa2 212 GGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED 246 (432)
T ss_dssp EEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred ceECCCCCEEEEeccccceEEEeecccceEEEEec
Confidence 999999998887776 5589999999998887763
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.37 E-value=1.8e-12 Score=150.27 Aligned_cols=244 Identities=11% Similarity=0.019 Sum_probs=158.2
Q ss_pred EEEEEcCCCCEEE-EEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC----------
Q 000054 2223 RAFSSHPLRPFFL-VGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL---------- 2291 (2548)
Q Consensus 2223 ~~VsfSPdG~~LA-SGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~---------- 2291 (2548)
..++|+|||++++ +++.++.|.+||+.+++.+..+..... ..+...+..++|+|++++++++..
T Consensus 37 ~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~-----~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~ 111 (337)
T d1pbyb_ 37 MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP-----EERVKSLFGAALSPDGKTLAIYESPVRLELTHFE 111 (337)
T ss_dssp CCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT-----TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred cEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCC-----cccccceeeEEEcCCCcEEEEeecCCcceeeecc
Confidence 5678889999874 677899999999999998888754221 112345667999999999988864
Q ss_pred --CCcEEEEEcCCCcccccccCccceeccCCc-ccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCC
Q 000054 2292 --DGTVCTWQLEVGGRSNVRPMESCLCFSSHA-MDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGG 2368 (2548)
Q Consensus 2292 --DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~-~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~ 2368 (2548)
++.+.+||..++..... +..+. ....+++++|+++++++ +.+.+||..+ .+....+..+...
T Consensus 112 ~~~~~~~~~d~~~~~~~~~--------~~~~~~~~~~~~s~dg~~l~~~~-----~~~~~~d~~~--~~~~~~~~~~~~~ 176 (337)
T d1pbyb_ 112 VQPTRVALYDAETLSRRKA--------FEAPRQITMLAWARDGSKLYGLG-----RDLHVMDPEA--GTLVEDKPIQSWE 176 (337)
T ss_dssp ECCCEEEEEETTTTEEEEE--------EECCSSCCCEEECTTSSCEEEES-----SSEEEEETTT--TEEEEEECSTTTT
T ss_pred ccccceeeccccCCeEEEe--------ccccCCceEEEEcCCCCEEEEEc-----CCcceeeeec--CcEEEEeecCCcc
Confidence 56788899887754322 11111 12236899999999874 4578899875 3334333322110
Q ss_pred eEEEEEccCCCC---CCCCCC--------------EEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccC
Q 000054 2369 ARSISVFDNDLG---SGSVSP--------------LIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADA 2431 (2548)
Q Consensus 2369 VtSLafsP~dlg---~gs~g~--------------lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafS 2431 (2548)
....+.++... .+.... ....+..++.+.+|| ..++......... .........++
T Consensus 177 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~~~ 249 (337)
T d1pbyb_ 177 -AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD---LETGEMAMREVRI---MDVFYFSTAVN 249 (337)
T ss_dssp -TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE---TTTCCEEEEEEEE---CSSCEEEEEEC
T ss_pred -ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEE---cCCCcEEEEEecC---CCcceEEEEec
Confidence 00011111000 000000 111223355688888 4455544332111 11223345678
Q ss_pred CCCCCccCCCCCceEEEccc-------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000054 2432 QTGSGSKPGDQNGMLWYIPK-------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2432 pdGk~v~s~D~sv~Iwdi~~-------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
+++..+...++.+++||+.. .+...+.+++|+|+|++|++++.||+|+|||.++++.+.+++
T Consensus 250 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~ 318 (337)
T d1pbyb_ 250 PAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp TTSSEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred ccceEEEEccccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence 88888777788899999643 256678999999999999999999999999999999999884
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.37 E-value=3.4e-11 Score=141.83 Aligned_cols=273 Identities=11% Similarity=0.003 Sum_probs=161.7
Q ss_pred cCCCCEEEEE-----ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE----------eCC
Q 000054 2228 HPLRPFFLVG-----SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA----------ALD 2292 (2548)
Q Consensus 2228 SPdG~~LASG-----S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG----------S~D 2292 (2548)
+|||+.+++. ..++.|.+||..+++.+.++.. +.+..++|+|||++|+++ +.|
T Consensus 10 spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~------------g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d 77 (355)
T d2bbkh_ 10 APDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG------------GFLPNPVVADDGSFIAHASTVFSRIARGERT 77 (355)
T ss_dssp CCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE------------CSSCEEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred CCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEEC------------CCCCceEEcCCCCEEEEEeCCCccccccCCC
Confidence 5899988764 3456799999999998888753 334479999999988765 347
Q ss_pred CcEEEEEcCCCcccccccCcccee-ccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE
Q 000054 2293 GTVCTWQLEVGGRSNVRPMESCLC-FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS 2371 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t-~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS 2371 (2548)
|.|++||..+++............ ..+.......++++|+.++++... .+..+.+||... .+.+..+..+.... .
T Consensus 78 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~-~ 153 (355)
T d2bbkh_ 78 DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS-PAPAVGVVDLEG--KAFKRMLDVPDCYH-I 153 (355)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS-SSCEEEEEETTT--TEEEEEEECCSEEE-E
T ss_pred CEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC-CCceeeeeecCC--CcEeeEEecCCcce-E
Confidence 899999999886443211100000 001111224689999988876432 677899999976 45555554332211 1
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCC--ccCCCCCceEEEc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSG--SKPGDQNGMLWYI 2449 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~--v~s~D~sv~Iwdi 2449 (2548)
.. .. ....++.+.||...+++............ ...............+.+++.. ....++.+++|+.
T Consensus 154 ~~-~~--------~~~~~~~~~dg~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 223 (355)
T d2bbkh_ 154 FP-TA--------PDTFFMHCRDGSLAKVAFGTEGTPEITHT-EVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDL 223 (355)
T ss_dssp EE-EE--------TTEEEEEETTSCEEEEECCSSSCCEEEEC-CCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEEC
T ss_pred ee-cC--------CcceEEEcCCCCEEEEEecCCCeEEEEec-ccccceecceeeeccccCCCCeEEEecCCCeEEEEec
Confidence 11 11 22444455565555555321111111110 0001111111122233333332 3445666677763
Q ss_pred cc----------CC----------CCCEEEEEEeCCCCEEEEEeCC----------CcEEEEECCCCcEEEEeccccccc
Q 000054 2450 PK----------AH----------LGSVTRISTVPNTSLFLTGSKD----------GDVKLWDAKAAQLVYHWSKLHERH 2499 (2548)
Q Consensus 2450 ~~----------gH----------~~~VtsLafSPdG~~LaSGS~D----------GtIrIWDl~Tgell~tL~~~Hs~h 2499 (2548)
.. .+ ......++++|++..++..+.+ ..|.+||..+++.+.+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~------ 297 (355)
T d2bbkh_ 224 SSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE------ 297 (355)
T ss_dssp TTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE------
T ss_pred CCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec------
Confidence 21 11 1223458899999888776554 369999999999988773
Q ss_pred ccccCcccCCCCceeecEEEEEEcCCe----EEEEECCCcEEEEECCCCc
Q 000054 2500 TFLQPSSRGFGGVVRAGVTDIQVVSRG----FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2500 sfl~~tl~GH~~~V~a~VtsLafSPdG----LaSGS~DGtIrIWDL~sg~ 2545 (2548)
.+ ..+.+++|+||| +++++.|++|++||+.++.
T Consensus 298 -------~~------~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~ 334 (355)
T d2bbkh_ 298 -------MG------HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 334 (355)
T ss_dssp -------EE------EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred -------CC------CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence 11 225677999998 4577889999999999875
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.26 E-value=6.8e-11 Score=137.31 Aligned_cols=248 Identities=10% Similarity=-0.021 Sum_probs=152.7
Q ss_pred EEEEEcCCCCEEE-EEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe-----------
Q 000054 2223 RAFSSHPLRPFFL-VGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA----------- 2290 (2548)
Q Consensus 2223 ~~VsfSPdG~~LA-SGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS----------- 2290 (2548)
.+++|+|||++++ ++..++.|++||+.+++.+..+..... ...+...+..++|+|||+++++++
T Consensus 43 ~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~----~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~ 118 (346)
T d1jmxb_ 43 GTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV----PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118 (346)
T ss_dssp CEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS----TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred ceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccccc----ccccCCceEEEEEecCCCEEEEEecCCcceeeeec
Confidence 5788999999875 566889999999999998877653221 112223567899999999998775
Q ss_pred -CCCcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCe
Q 000054 2291 -LDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGA 2369 (2548)
Q Consensus 2291 -~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~V 2369 (2548)
.++.+.+|+..+++...... ....+.......+++++.+++++ +.+.+||+.+ .+.+..+..+. ..
T Consensus 119 ~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~--~~~~~~~~~~~-~~ 185 (346)
T d1jmxb_ 119 VKPPRLEVFSTADGLEAKPVR----TFPMPRQVYLMRAADDGSLYVAG------PDIYKMDVKT--GKYTVALPLRN-WN 185 (346)
T ss_dssp ECCCEEEEEEGGGGGGBCCSE----EEECCSSCCCEEECTTSCEEEES------SSEEEECTTT--CCEEEEECSTT-CC
T ss_pred cCcceEEEEecccceeeeEEE----eeeccCceEEEEecCCCEEEEeC------CcceEEEccC--CCEEEEEecCC-Cc
Confidence 46788999988765332110 01112222334467777666542 4688899865 44444443322 12
Q ss_pred EEEEEccCCCC-------------------CCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccccc
Q 000054 2370 RSISVFDNDLG-------------------SGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHAD 2430 (2548)
Q Consensus 2370 tSLafsP~dlg-------------------~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vaf 2430 (2548)
..+.++|+... .......++++..++.+.+|| ..++.......... ........+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~ 259 (346)
T d1jmxb_ 186 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD---LKTGKTHTQEFADL---TELYFTGLR 259 (346)
T ss_dssp CTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE---TTTCCEEEEEEEEC---SSCEEEEEE
T ss_pred cceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEE---CCCCceEEEEeecc---cceeEEEEE
Confidence 22222222100 000122344455667788888 44454433321111 111223455
Q ss_pred CCCCCC-ccCCCCCceEEEccc-------CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEec
Q 000054 2431 AQTGSG-SKPGDQNGMLWYIPK-------AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWS 2493 (2548)
Q Consensus 2431 SpdGk~-v~s~D~sv~Iwdi~~-------gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~ 2493 (2548)
++++.. +....+.+.+|+... .+...+.+++|+|||++|++|+.||.|+|||+++++.+.+++
T Consensus 260 ~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~ 330 (346)
T d1jmxb_ 260 SPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330 (346)
T ss_dssp CSSCTTEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred eCCCCEEEEecCCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE
Confidence 555555 445556788888533 234578899999999999999999999999999999999883
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.22 E-value=3.5e-10 Score=131.26 Aligned_cols=246 Identities=10% Similarity=0.127 Sum_probs=152.7
Q ss_pred EEEEEEcCCCCEEEEE-ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC-CCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVG-SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASG-S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-DGtVrVWD 2299 (2548)
+..++|+|||++|+++ ..|+.|++|++..+.....+..... +...+..++|+|||+++++++. ++.|.+|+
T Consensus 39 v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~-------~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~ 111 (333)
T d1ri6a_ 39 VQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA-------LPGSLTHISTDHQGQFVFVGSYNAGNVSVTR 111 (333)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE-------CSSCCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc-------cCCCceEEEEcCCCCEEeecccCCCceeeec
Confidence 4678899999998655 4589999999986544333222111 1245778999999999999875 67899999
Q ss_pred cCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCccee----eeccCCCeEEEE
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRAS----ITCHEGGARSIS 2373 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~s----l~gHs~~VtSLa 2373 (2548)
.......... ....+...+. .++++++.+++++ ..+..|.+|+........... ...+......++
T Consensus 112 ~~~~~~~~~~------~~~~~~~~~~~v~~s~d~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~ 183 (333)
T d1ri6a_ 112 LEDGLPVGVV------DVVEGLDGCHSANISPDNRTLWVPA--LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMV 183 (333)
T ss_dssp EETTEEEEEE------EEECCCTTBCCCEECTTSSEEEEEE--GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEE
T ss_pred cccccceecc------cccCCCccceEEEeeecceeeeccc--cccceeeEEEeccCCcceeeeceeeeeecCCCccEEE
Confidence 8765322111 1122222222 4899999988876 357789999986531111111 112345678899
Q ss_pred EccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCc--eeeeecC--CCCCCCccccccccCCCCCC---ccCCCCCceE
Q 000054 2374 VFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGK--TKKHKHS--DRGGSSINTCAHADAQTGSG---SKPGDQNGML 2446 (2548)
Q Consensus 2374 fsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk--~l~tl~~--~~~~s~~~~~~vafSpdGk~---v~s~D~sv~I 2446 (2548)
|+++. ....++....+...+|+... .... ....... .............++++++. ....++.+.+
T Consensus 184 ~~~~~------~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~ 256 (333)
T d1ri6a_ 184 FHPNE------QYAYCVNELNSSVDVWELKD-PHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV 256 (333)
T ss_dssp ECTTS------SEEEEEETTTTEEEEEESSC-TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred Eeccc------eeEEeeccccCceEEEeecc-cccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEE
Confidence 99883 33444555677888888542 1111 1111111 11112222344678889886 3445566777
Q ss_pred EEccc-----------CCCCCEEEEEEeCCCCEEEEEeC-CCcEEEE--ECCCCcEE
Q 000054 2447 WYIPK-----------AHLGSVTRISTVPNTSLFLTGSK-DGDVKLW--DAKAAQLV 2489 (2548)
Q Consensus 2447 wdi~~-----------gH~~~VtsLafSPdG~~LaSGS~-DGtIrIW--Dl~Tgell 2489 (2548)
|++.. .+...+..++|+|+|++|++++. +++|++| |.++|++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~ 313 (333)
T d1ri6a_ 257 FSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH 313 (333)
T ss_dssp EEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred EEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEE
Confidence 76422 23345678999999998877654 6899998 55677653
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.16 E-value=2.9e-10 Score=133.73 Aligned_cols=247 Identities=11% Similarity=-0.030 Sum_probs=149.7
Q ss_pred EEEEcCCCCEEEEE----------ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe--C
Q 000054 2224 AFSSHPLRPFFLVG----------SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA--L 2291 (2548)
Q Consensus 2224 ~VsfSPdG~~LASG----------S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS--~ 2291 (2548)
.++|+|||++|++. ..|+.|++||..+++.+..+.....+. .........++|++++++++++. .
T Consensus 51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~~~v~~~~~ 127 (355)
T d2bbkh_ 51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR---FLVGTYPWMTSLTPDGKTLLFYQFSP 127 (355)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC---CCBSCCGGGEEECTTSSEEEEEECSS
T ss_pred ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcce---eecCCCCceEEEecCCCeeEEecCCC
Confidence 57899999988753 458899999999999888876543322 11224456789999999888775 4
Q ss_pred CCcEEEEEcCCCcccccccCccc-eeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeE
Q 000054 2292 DGTVCTWQLEVGGRSNVRPMESC-LCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGAR 2370 (2548)
Q Consensus 2292 DGtVrVWDl~tgk~i~i~p~~s~-~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~Vt 2370 (2548)
+..+.+|+..+++.....+.... ............+++++..++... ..++.+.+++.... . ..+...+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~--~~~~~~~~~~~~~~--~-----~~~~~~~~ 198 (355)
T d2bbkh_ 128 APAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAF--GTEGTPEITHTEVF--H-----PEDEFLIN 198 (355)
T ss_dssp SCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEEC--CSSSCCEEEECCCC--S-----CTTSCBCS
T ss_pred CceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEe--cCCCeEEEEecccc--c-----ceecceee
Confidence 57899999988764332111000 000000111223566666655543 24555555555431 1 12333344
Q ss_pred EEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeee--ecCC------CCCCCccccccccCCCCCCc-----
Q 000054 2371 SISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKH--KHSD------RGGSSINTCAHADAQTGSGS----- 2437 (2548)
Q Consensus 2371 SLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~t--l~~~------~~~s~~~~~~vafSpdGk~v----- 2437 (2548)
...+.+. +..++.++.++.+++||+. .++.... .... ..........+++++++..+
T Consensus 199 ~~~~~~~-------~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~ 268 (355)
T d2bbkh_ 199 HPAYSQK-------AGRLVWPTYTGKIHQIDLS---SGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD 268 (355)
T ss_dssp CCEEETT-------TTEEEEEBTTSEEEEEECT---TSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred eccccCC-------CCeEEEecCCCeEEEEecC---CCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEec
Confidence 4555555 5688889999999999954 3332111 1000 00000112235566666541
Q ss_pred -------cCCCCCceEEEcccC-------CCCCEEEEEEeCCCC--EEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2438 -------KPGDQNGMLWYIPKA-------HLGSVTRISTVPNTS--LFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2438 -------~s~D~sv~Iwdi~~g-------H~~~VtsLafSPdG~--~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
....+.+.+|+...+ +...+.+++|+|||+ ++++++.|++|+|||+++++.+.++
T Consensus 269 ~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i 339 (355)
T d2bbkh_ 269 QRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSV 339 (355)
T ss_dssp ECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred cCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEE
Confidence 112245678875432 234578999999997 4567778999999999999999988
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.12 E-value=4.4e-09 Score=124.85 Aligned_cols=224 Identities=13% Similarity=0.061 Sum_probs=131.3
Q ss_pred EEEEEcCCCCEEEEEE----------CCCeEEEEEcCCCceeEEEeccCCCCC---------------------------
Q 000054 2223 RAFSSHPLRPFFLVGS----------SNTHIYLWEFGKDKATATYGVLPAANV--------------------------- 2265 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS----------~DGsVrLWDl~tg~~l~t~~~l~ghs~--------------------------- 2265 (2548)
..++|+|||+++++++ .++.|.+||..+++.+..+........
T Consensus 69 ~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~ 148 (373)
T d2madh_ 69 PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGP 148 (373)
T ss_pred ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCC
Confidence 4688999999998764 467899999999887655432111000
Q ss_pred ----------CCCCCCCCeEEEEEccCCCEE-EEEeCCCcEEEEEcCCCcccccccCccceeccCCcccE--EEEcCCCC
Q 000054 2266 ----------PPPYALASISALQFDHYGHRF-ASAALDGTVCTWQLEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGS 2332 (2548)
Q Consensus 2266 ----------~~~~H~~~VtsVaFSPdG~~L-aSGS~DGtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGs 2332 (2548)
....+.....++.++|+|+.+ ++.+.||++.+|+...+......... ....+..... ..+.+++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 226 (373)
T d2madh_ 149 AVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGA--MLTAAQNLLTQPAQANKSGR 226 (373)
T ss_pred ceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeee--ccccCccceeeeEEECCCce
Confidence 001122334567777777544 67788888888888766433211000 0001111111 12455555
Q ss_pred EEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEE----------EEEccCCCC---CCCCCCEEEEEeCCCcEEE
Q 000054 2333 VIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARS----------ISVFDNDLG---SGSVSPLIVTGGKGGDVGI 2399 (2548)
Q Consensus 2333 lLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtS----------LafsP~dlg---~gs~g~lLVSGS~DGtVrL 2399 (2548)
.++.+ .++.+.+|+..............+...... +.++++.-. ....+..+++...++.|.+
T Consensus 227 ~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~ 302 (373)
T d2madh_ 227 IVWPV----YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS 302 (373)
T ss_pred EEEec----CCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEE
Confidence 55443 688999999875322222233333333332 233333100 0001234455566677777
Q ss_pred EeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCC--EEEEEeCCCc
Q 000054 2400 HDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTS--LFLTGSKDGD 2477 (2548)
Q Consensus 2400 WDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~--~LaSGS~DGt 2477 (2548)
|| ..+++.+..+ .+...+..++|+|||+ ++++++.|++
T Consensus 303 ~d---~~t~~~~~~~-------------------------------------~~~~~~~~~a~spDG~~~l~vt~~~d~~ 342 (373)
T d2madh_ 303 VT---GLVGQTSSQI-------------------------------------SLGHDVDAISVAQDGGPDLYALSAGTEV 342 (373)
T ss_pred EE---CCCCcEEEEe-------------------------------------cCCCCeeEEEECCCCCEEEEEEeCCCCe
Confidence 77 4455555443 2556788999999998 4578899999
Q ss_pred EEEEECCCCcEEEEe
Q 000054 2478 VKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2478 IrIWDl~Tgell~tL 2492 (2548)
|+|||+.+++.++++
T Consensus 343 v~v~D~~tg~~~~~~ 357 (373)
T d2madh_ 343 LHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEECCCCCEEEEE
Confidence 999999999999988
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.03 E-value=2.7e-09 Score=128.10 Aligned_cols=259 Identities=10% Similarity=-0.041 Sum_probs=154.3
Q ss_pred CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe----------CCCcEEEEEcCCCcccccc
Q 000054 2240 NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA----------LDGTVCTWQLEVGGRSNVR 2309 (2548)
Q Consensus 2240 DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS----------~DGtVrVWDl~tgk~i~i~ 2309 (2548)
+..|.+||..+++.+..+.. +....++|+|||+.+++++ .|++|.+||..+++.....
T Consensus 45 ~~~~~~~d~~~~~~~~~~~~------------~~~~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i 112 (368)
T d1mdah_ 45 TTENWVSCAGCGVTLGHSLG------------AFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADI 112 (368)
T ss_dssp SEEEEEEETTTTEEEEEEEE------------CTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEE
T ss_pred cceEEEEeCCCCcEEEEEeC------------CCCCcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeee
Confidence 34577779999998887643 1223589999999988764 4778999999988654322
Q ss_pred cCccc-eeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEE
Q 000054 2310 PMESC-LCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLI 2388 (2548)
Q Consensus 2310 p~~s~-~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lL 2388 (2548)
+.... ....+....-..|+|||++++++. ..++.+.+||+.. .+....+..+..... .|.. ...+
T Consensus 113 ~~p~~~~~~~g~~p~~~a~SpDGk~l~va~--~~~~~v~~~d~~~--~~~~~~~~~~~~~~~----~~~~------~~~~ 178 (368)
T d1mdah_ 113 ELPDAPRFSVGPRVHIIGNCASSACLLFFL--FGSSAAAGLSVPG--ASDDQLTKSASCFHI----HPGA------AATH 178 (368)
T ss_dssp EETTSCSCCBSCCTTSEEECTTSSCEEEEE--CSSSCEEEEEETT--TEEEEEEECSSCCCC----EEEE------TTEE
T ss_pred cCCccceecccCCccceEECCCCCEEEEEe--CCCCeEEEEECCC--CcEeEEeeccCcceE----ccCC------CceE
Confidence 11000 001111122246999999988775 2579999999976 555555554433221 2221 3477
Q ss_pred EEEeCCCcEEEEeCCccccCceeeeecC-CCCCCCccccccccCCCCCCccCCCCCceEE----------EcccCCC---
Q 000054 2389 VTGGKGGDVGIHDFRYIATGKTKKHKHS-DRGGSSINTCAHADAQTGSGSKPGDQNGMLW----------YIPKAHL--- 2454 (2548)
Q Consensus 2389 VSGS~DGtVrLWDLR~l~TGk~l~tl~~-~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iw----------di~~gH~--- 2454 (2548)
+..+.||.+.++++.. .+........ .............+.+++..+....+.+.++ +....+.
T Consensus 179 v~~~~Dg~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 256 (368)
T d1mdah_ 179 YLGSCPASLAASDLAA--APAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGR 256 (368)
T ss_dssp ECCCCTTSCEEEECCS--SCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHH
T ss_pred EEEcCCCCEEEEEecC--CceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeeccccccee
Confidence 7788899999998542 1111111000 0001111112233444444433333333333 3222111
Q ss_pred -------CCEEEEEEeCCCCEEEEEeCC---------CcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEE
Q 000054 2455 -------GSVTRISTVPNTSLFLTGSKD---------GDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVT 2518 (2548)
Q Consensus 2455 -------~~VtsLafSPdG~~LaSGS~D---------GtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~Vt 2518 (2548)
+....++++|++..++....+ ..|.+||..+++.+.++. ++ ..+.
T Consensus 257 ~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~---------------~~----~~~~ 317 (368)
T d1mdah_ 257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS---------------NG----HDSD 317 (368)
T ss_dssp HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE---------------EE----EEEC
T ss_pred eeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec---------------CC----Ccee
Confidence 122357889998877665432 258999999999887662 11 2356
Q ss_pred EEEEcCCe----EEEEECCCcEEEEECCCCc
Q 000054 2519 DIQVVSRG----FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2519 sLafSPdG----LaSGS~DGtIrIWDL~sg~ 2545 (2548)
+++|+||| +++++.|++|++||..++.
T Consensus 318 ~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk 348 (368)
T d1mdah_ 318 AIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp EEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred EEEECCCCCEEEEEEeCCCCeEEEEECCCCC
Confidence 77999998 4577889999999998875
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.72 E-value=6.4e-08 Score=115.87 Aligned_cols=80 Identities=5% Similarity=-0.144 Sum_probs=59.1
Q ss_pred EEEEcCCCCEEEEEE----------CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe-CC
Q 000054 2224 AFSSHPLRPFFLVGS----------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA-LD 2292 (2548)
Q Consensus 2224 ~VsfSPdG~~LASGS----------~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS-~D 2292 (2548)
.++|+|||+++++.+ .|+.|++||..+++.+..+....... .........++|+|||++++++. .+
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~---~~~g~~p~~~a~SpDGk~l~va~~~~ 145 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR---FSVGPRVHIIGNCASSACLLFFLFGS 145 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS---CCBSCCTTSEEECTTSSCEEEEECSS
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccce---ecccCCccceEECCCCCEEEEEeCCC
Confidence 467889999888653 47889999999999888876432211 11112334689999999998876 57
Q ss_pred CcEEEEEcCCCccc
Q 000054 2293 GTVCTWQLEVGGRS 2306 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i 2306 (2548)
+.+.+||+.+++..
T Consensus 146 ~~v~~~d~~~~~~~ 159 (368)
T d1mdah_ 146 SAAAGLSVPGASDD 159 (368)
T ss_dssp SCEEEEEETTTEEE
T ss_pred CeEEEEECCCCcEe
Confidence 99999999887643
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.57 E-value=6e-06 Score=101.73 Aligned_cols=142 Identities=7% Similarity=-0.070 Sum_probs=100.5
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC---------CCc
Q 000054 2224 AFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL---------DGT 2294 (2548)
Q Consensus 2224 ~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~---------DGt 2294 (2548)
.+.|.+++.++. ..|+.+.+||..+++....+.. + ....|...|.++.|+|||++|+.++. ++.
T Consensus 21 ~~~W~~d~~~~~--~~~~~~~~~~~~t~~~~~~~~~---~--~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~ 93 (470)
T d2bgra1 21 SLRWISDHEYLY--KQENNILVFNAEYGNSSVFLEN---S--TFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (470)
T ss_dssp CCEECSSSEEEE--ESSSCEEEEETTTCCEEEEECT---T--TTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred CCEeCCCCEEEE--EcCCcEEEEECCCCCEEEEEch---h--hhhhccCccceeEECCCCCEEEEEECCcceeeeccCce
Confidence 456788888775 4578899999999987765542 1 23345678999999999999998854 568
Q ss_pred EEEEEcCCCcccccccCccceeccCCcccEE--EEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeec--------
Q 000054 2295 VCTWQLEVGGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITC-------- 2364 (2548)
Q Consensus 2295 VrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~g-------- 2364 (2548)
+.+||+.+++... +..+...+. .|+|||+.+|.. .++.+.+|+...+ +..+....
T Consensus 94 ~~l~d~~~~~~~~---------l~~~~~~~~~~~~SPDG~~ia~~----~~~~l~~~~~~~g--~~~~~t~~~~~~~~~~ 158 (470)
T d2bgra1 94 YDIYDLNKRQLIT---------EERIPNNTQWVTWSPVGHKLAYV----WNNDIYVKIEPNL--PSYRITWTGKEDIIYN 158 (470)
T ss_dssp EEEEETTTTEECC---------SSCCCTTEEEEEECSSTTCEEEE----ETTEEEEESSTTS--CCEECCSCCBTTTEEE
T ss_pred EEEEECCCCcccc---------cccCCccccccccccCcceeeEe----ecccceEEECCCC--ceeeeeeccCCCcccc
Confidence 8899999875321 344555554 499999999997 5889999998753 32222111
Q ss_pred ----------cCCCeEEEEEccCCCCCCCCCCEEEEEeCC
Q 000054 2365 ----------HEGGARSISVFDNDLGSGSVSPLIVTGGKG 2394 (2548)
Q Consensus 2365 ----------Hs~~VtSLafsP~dlg~gs~g~lLVSGS~D 2394 (2548)
+.+....+.|+|+ |+.|+....|
T Consensus 159 g~~d~~~~~~~~~~~~~~~wSPD-------Gk~ia~~~~d 191 (470)
T d2bgra1 159 GITDWVYEEEVFSAYSALWWSPN-------GTFLAYAQFN 191 (470)
T ss_dssp SBCCHHHHHHTSSSSBCEEECTT-------SSEEEEEEEE
T ss_pred cccceeeeeeecCCccccEECCC-------CCccceeEec
Confidence 2233456789998 7788777654
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.28 E-value=9.5e-07 Score=109.68 Aligned_cols=275 Identities=9% Similarity=0.005 Sum_probs=155.6
Q ss_pred EEEEECCCeEEEEEcCCCceeEEEeccCCCCC--------------------CCCCCCCCeEEEEEccCCCEEEEE-eCC
Q 000054 2234 FLVGSSNTHIYLWEFGKDKATATYGVLPAANV--------------------PPPYALASISALQFDHYGHRFASA-ALD 2292 (2548)
Q Consensus 2234 LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~--------------------~~~~H~~~VtsVaFSPdG~~LaSG-S~D 2292 (2548)
+++|+.+|.|++|++.+++.+..+..+..... ....|........++|||+++++. ..+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 45789999999999999999888766431110 112233445566668999998666 467
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCE--EEEEeccCCCC-----------------eEEEEECCC
Q 000054 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSV--IAAAGHSSNGI-----------------NVVVWDTLA 2353 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGsl--LATgG~SS~DG-----------------tVrIWDl~t 2353 (2548)
..|.++|+++++...+... -.+....-.+++|+|+. ++..+ .+. .+..+|..+
T Consensus 94 ~rVavIDl~t~k~~~ii~i-----P~g~gphgi~~spdg~t~YV~~~~---~~~v~~~~dg~~~~~~~~~~~~~~iD~~t 165 (441)
T d1qnia2 94 TRVARIRLDIMKTDKITHI-----PNVQAIHGLRLQKVPKTNYVFCNA---EFVIPQPNDGTDFSLDNSYTMFTAIDAET 165 (441)
T ss_dssp TEEEEEETTTTEEEEEEEC-----TTCCCEEEEEECCSSBCCEEEEEE---CSCEESSCSSSCCCGGGEEEEEEEEETTT
T ss_pred CEEEEEECCCCcEeeEEec-----CCCCCccceEEeccCCEEEEEecc---CCcccccCcccccccccccceEEeecCcc
Confidence 8999999998865433211 11222222358888884 33332 221 234567654
Q ss_pred CCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCC-cEEEEeCCccccCceeeeecCCCCCCCccccccccCC
Q 000054 2354 PPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGG-DVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQ 2432 (2548)
Q Consensus 2354 ~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DG-tVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSp 2432 (2548)
.+....+.. .+....+.++|+ ++++++++.+. .+..+| ..+.+....+. .........+.+
T Consensus 166 --~~v~~qI~v-~~~p~~v~~spd-------Gk~a~vt~~nse~~~~id---~~t~~~~d~i~-----v~n~p~~~~~~~ 227 (441)
T d1qnia2 166 --MDVAWQVIV-DGNLDNTDADYT-------GKYATSTCYNSERAVDLA---GTMRNDRDWVV-----VFNVERIAAAVK 227 (441)
T ss_dssp --CSEEEEEEE-SSCCCCEEECSS-------SSEEEEEESCTTCCSSHH---HHTCSSBCEEE-----EEEHHHHHHHHH
T ss_pred --ceeeEEEec-CCCccceEECCC-------CCEEEEEecCCCceEEEe---ccCcceEEEEE-----eCCccceEEEec
Confidence 344444433 345678888998 67777776553 333334 22222222110 001123456678
Q ss_pred CCCCccCC-CCCceEEEcc--------cCCCCCEEEEEEeCCCCEEEE-EeCCCcEEEEECCCCcEEEEecccccccccc
Q 000054 2433 TGSGSKPG-DQNGMLWYIP--------KAHLGSVTRISTVPNTSLFLT-GSKDGDVKLWDAKAAQLVYHWSKLHERHTFL 2502 (2548)
Q Consensus 2433 dGk~v~s~-D~sv~Iwdi~--------~gH~~~VtsLafSPdG~~LaS-GS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl 2502 (2548)
+|++.... ++...++... .... ....+.++|||+++++ +..|++|.|||+.+.+.. +.+.. +.
T Consensus 228 dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~--~~~~~-~~--- 300 (441)
T d1qnia2 228 AGNFKTIGDSKVPVVDGRGESEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDL--FEDKI-EL--- 300 (441)
T ss_dssp TTCCBCCTTCCCCEEECSSSCSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHH--TTTSS-CG---
T ss_pred CCCEEEeCCCCcEEEEcccCCceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehhhhH--hhccC-Cc---
Confidence 88884433 3333444311 1122 2467999999998755 566999999998753211 10000 00
Q ss_pred cCcccCCCCceeecEEEEEEcCCe--EEEEECCCcEEEEECC
Q 000054 2503 QPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSVKLIQLE 2542 (2548)
Q Consensus 2503 ~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtIrIWDL~ 2542 (2548)
..++.++...- -.....+|+++| +.|.+.|..|..|++.
T Consensus 301 ~~~~~~~~~~g-lgplh~~fd~~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 301 RDTIVAEPELG-LGPLHTTFDGRGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp GGGEEECCBCC-SCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred ceEEEeecccc-cCcccceecCCceEEEcccccceEEEeccc
Confidence 00011111111 112344899999 6788899999999974
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.14 E-value=0.00056 Score=78.68 Aligned_cols=241 Identities=9% Similarity=0.136 Sum_probs=153.1
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccC-CCEEEEE-eCCCcEEEEEc
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHY-GHRFASA-ALDGTVCTWQL 2300 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPd-G~~LaSG-S~DGtVrVWDl 2300 (2548)
..++++++|+++++-..++.|++||.+ |+.+..+.... ........-..+++..+ +..+++. +.++.|..++.
T Consensus 26 ~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 100 (279)
T d1q7fa_ 26 SGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECG----KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ 100 (279)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBS----SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT
T ss_pred cEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccC----CCcccccccccccccccccccceeccCCccccccccc
Confidence 677888999988887888999999954 66666663321 11112234556666655 3444433 34456766665
Q ss_pred CCCcccccccCccceeccCCcc--cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee--ccCCCeEEEEEcc
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAM--DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT--CHEGGARSISVFD 2376 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~--~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~--gHs~~VtSLafsP 2376 (2548)
. +...... ...... .-.++.++|+++++.. ..+.+.+++.. ++.+..+. .+......+++.+
T Consensus 101 ~-g~~~~~~-------~~~~~~~p~~~avd~~G~i~v~~~---~~~~~~~~~~~---g~~~~~~g~~~~~~~~~~i~~d~ 166 (279)
T d1q7fa_ 101 Y-GQFVRKF-------GATILQHPRGVTVDNKGRIIVVEC---KVMRVIIFDQN---GNVLHKFGCSKHLEFPNGVVVND 166 (279)
T ss_dssp T-SCEEEEE-------CTTTCSCEEEEEECTTSCEEEEET---TTTEEEEECTT---SCEEEEEECTTTCSSEEEEEECS
T ss_pred c-ccceeec-------CCCcccccceeccccCCcEEEEee---ccceeeEeccC---Cceeecccccccccccceeeecc
Confidence 4 2211100 011111 1234778888777753 56778888764 44555442 4556778888887
Q ss_pred CCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCC
Q 000054 2377 NDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGS 2456 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~ 2456 (2548)
+ +.++++....+.|++||. .|+.+..+. ..++...
T Consensus 167 ~-------g~i~v~d~~~~~V~~~d~----~G~~~~~~g----------------------------------~~g~~~~ 201 (279)
T d1q7fa_ 167 K-------QEIFISDNRAHCVKVFNY----EGQYLRQIG----------------------------------GEGITNY 201 (279)
T ss_dssp S-------SEEEEEEGGGTEEEEEET----TCCEEEEES----------------------------------CTTTSCS
T ss_pred c-------eeEEeeeccccceeeeec----CCceeeeec----------------------------------ccccccC
Confidence 7 678888888899999993 345544430 0234445
Q ss_pred EEEEEEeCCCCEEEEEeC-CCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe-EEEEECCC
Q 000054 2457 VTRISTVPNTSLFLTGSK-DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG-FLSCGGDG 2534 (2548)
Q Consensus 2457 VtsLafSPdG~~LaSGS~-DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG-LaSGS~DG 2534 (2548)
...|+++|+|+++++-+. ++.|.+|+ .+|+.+.++... ..+ ...+.+++.|+| |+.+..++
T Consensus 202 P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~----------~~~------~~p~~vav~~dG~l~V~~~n~ 264 (279)
T d1q7fa_ 202 PIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESK----------VKH------AQCFDVALMDDGSVVLASKDY 264 (279)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEES----------SCC------SCEEEEEEETTTEEEEEETTT
T ss_pred CcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCC----------CCC------CCEeEEEEeCCCcEEEEeCCC
Confidence 678999999998887654 45799998 468888776210 011 124677999999 76677899
Q ss_pred cEEEEECCCC
Q 000054 2535 SVKLIQLEDY 2544 (2548)
Q Consensus 2535 tIrIWDL~sg 2544 (2548)
+|++|+....
T Consensus 265 ~v~~fr~~~~ 274 (279)
T d1q7fa_ 265 RLYIYRYVQL 274 (279)
T ss_dssp EEEEEECSCC
T ss_pred eEEEEEeeee
Confidence 9999998653
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.97 E-value=0.0014 Score=77.13 Aligned_cols=256 Identities=12% Similarity=0.057 Sum_probs=148.9
Q ss_pred EEEEEcCCCCEEEEEEC-------CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcE
Q 000054 2223 RAFSSHPLRPFFLVGSS-------NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTV 2295 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~-------DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtV 2295 (2548)
-..+|+|+|+++++... +|.|..||..++.......... ....+.-..++|.++++.+++++..+.|
T Consensus 21 EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~------~~~~g~P~Gl~~~~dg~~l~vad~~~~i 94 (314)
T d1pjxa_ 21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEV------NGYGGIPAGCQCDRDANQLFVADMRLGL 94 (314)
T ss_dssp EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEE------TTEECCEEEEEECSSSSEEEEEETTTEE
T ss_pred eEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCcc------ccCCCcceeEEEeCCCCEEEEEECCCeE
Confidence 55688899998876422 4678888887775433321100 0011346789999999988888887888
Q ss_pred EEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEecc------------CCCCeEEEEECCCCCCCcceeee
Q 000054 2296 CTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHS------------SNGINVVVWDTLAPPTSSRASIT 2363 (2548)
Q Consensus 2296 rVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~S------------S~DGtVrIWDl~t~~~k~v~sl~ 2363 (2548)
...+.+.+.............+. ..+++ .+.++|++.++-... ..+|.|..++.. ++.. .+.
T Consensus 95 ~~~~~~g~~~~~~~~~~~g~~~~-~pndl-~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d---g~~~-~~~ 168 (314)
T d1pjxa_ 95 LVVQTDGTFEEIAKKDSEGRRMQ-GCNDC-AFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD---GQMI-QVD 168 (314)
T ss_dssp EEEETTSCEEECCSBCTTSCBCB-CCCEE-EECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT---SCEE-EEE
T ss_pred EEEeCCCcEEEEEeccccccccC-CCcEE-EECCCCCEEEecCccCcccccccceeccCCceEEEEeec---Ccee-Eee
Confidence 88887754321111000000010 11223 478889888774200 012344444432 2222 222
Q ss_pred ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCC
Q 000054 2364 CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQN 2443 (2548)
Q Consensus 2364 gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~s 2443 (2548)
..-...+.++|+|+. .+....+.++-+..+.|..||+. ....+...
T Consensus 169 ~~~~~pNGi~~~~d~--d~~~~~lyv~d~~~~~i~~~d~~---~~g~~~~~----------------------------- 214 (314)
T d1pjxa_ 169 TAFQFPNGIAVRHMN--DGRPYQLIVAETPTKKLWSYDIK---GPAKIENK----------------------------- 214 (314)
T ss_dssp EEESSEEEEEEEECT--TSCEEEEEEEETTTTEEEEEEEE---ETTEEEEE-----------------------------
T ss_pred CCcceeeeeEECCCC--CcceeEEEEEeecccceEEeecc---Ccccccee-----------------------------
Confidence 333455788888872 00001255666778888888843 11111110
Q ss_pred ceEEE-cccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEE
Q 000054 2444 GMLWY-IPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQV 2522 (2548)
Q Consensus 2444 v~Iwd-i~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLaf 2522 (2548)
+++. ....+......++++.+|++.++....+.|.+||.+.++.+.++. ... ..+++++|
T Consensus 215 -~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~--------------~p~----~~~t~~af 275 (314)
T d1pjxa_ 215 -KVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR--------------CPF----EKPSNLHF 275 (314)
T ss_dssp -EEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE--------------CSS----SCEEEEEE
T ss_pred -eEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEE--------------CCC----CCEEEEEE
Confidence 1111 111223345689999999998888888999999998887665552 111 22567899
Q ss_pred cCCe---EEEEECCCcEEEEECCC
Q 000054 2523 VSRG---FLSCGGDGSVKLIQLED 2543 (2548)
Q Consensus 2523 SPdG---LaSGS~DGtIrIWDL~s 2543 (2548)
.|++ ++|.+.+|+|...+++.
T Consensus 276 g~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 276 KPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CTTSSEEEEEETTTTEEEEEECSS
T ss_pred eCCCCEEEEEECCCCcEEEEECCC
Confidence 9988 57888889888888764
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.89 E-value=8.3e-05 Score=92.01 Aligned_cols=245 Identities=10% Similarity=0.017 Sum_probs=138.0
Q ss_pred EEEEEcCCCCEEEEE-ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCE--EEEEeCCC------
Q 000054 2223 RAFSSHPLRPFFLVG-SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHR--FASAALDG------ 2293 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASG-S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~--LaSGS~DG------ 2293 (2548)
....+.|||++|++. ..++.|.++|+.+++....+... +...+..++|+|+|+. ++..+.+.
T Consensus 75 s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP---------~g~gphgi~~spdg~t~YV~~~~~~~v~~~~d 145 (441)
T d1qnia2 75 SMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIP---------NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPND 145 (441)
T ss_dssp EEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECT---------TCCCEEEEEECCSSBCCEEEEEECSCEESSCS
T ss_pred ceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecC---------CCCCccceEEeccCCEEEEEeccCCcccccCc
Confidence 334456899998765 57889999999999887776431 2267999999999884 43333332
Q ss_pred -----------cEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccC---------------------
Q 000054 2294 -----------TVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSS--------------------- 2341 (2548)
Q Consensus 2294 -----------tVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS--------------------- 2341 (2548)
.+..+|..+.+.... ..-+..-.-..++|+|++++++...+
T Consensus 146 g~~~~~~~~~~~~~~iD~~t~~v~~q-------I~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n 218 (441)
T d1qnia2 146 GTDFSLDNSYTMFTAIDAETMDVAWQ-------VIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFN 218 (441)
T ss_dssp SSCCCGGGEEEEEEEEETTTCSEEEE-------EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEE
T ss_pred ccccccccccceEEeecCccceeeEE-------EecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCC
Confidence 123455554432111 01111112234777887776654211
Q ss_pred -----------------CCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCE-EEEEeCCCcEEEEeCC
Q 000054 2342 -----------------NGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPL-IVTGGKGGDVGIHDFR 2403 (2548)
Q Consensus 2342 -----------------~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~l-LVSGS~DGtVrLWDLR 2403 (2548)
.++.+.+++... .+.+..+.... ....+.++|+ |++ +++|..+++|.+||+.
T Consensus 219 ~p~~~~~~~dGk~~~v~~~~v~vvd~~~~--~~v~~~IPvgk-sPhGv~vSPD-------Gkyl~~~~~~~~tvsv~d~~ 288 (441)
T d1qnia2 219 VERIAAAVKAGNFKTIGDSKVPVVDGRGE--SEFTRYIPVPK-NPHGLNTSPD-------GKYFIANGKLSPTVSVIAID 288 (441)
T ss_dssp HHHHHHHHHTTCCBCCTTCCCCEEECSSS--CSSEEEECCBS-SCCCEEECTT-------SCEEEEECTTSSBEEEEEGG
T ss_pred ccceEEEecCCCEEEeCCCCcEEEEcccC--CceEEEEeCCC-CccCceECCC-------CCEEEEeCCcCCcEEEEEee
Confidence 133444444432 33445555433 3577899999 565 5667789999999965
Q ss_pred ccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 000054 2404 YIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDA 2483 (2548)
Q Consensus 2404 ~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl 2483 (2548)
.+. ..+. .. .....+..+ + ....-...-.+|+++|....+...|..|..|++
T Consensus 289 k~~-----~~~~--~~-~~~~~~~~~------------------~--~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~ 340 (441)
T d1qnia2 289 KLD-----DLFE--DK-IELRDTIVA------------------E--PELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNI 340 (441)
T ss_dssp GHH-----HHTT--TS-SCGGGGEEE------------------C--CBCCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred hhh-----hHhh--cc-CCcceEEEe------------------e--cccccCcccceecCCceEEEcccccceEEEecc
Confidence 311 1110 00 000000000 0 000112334579999998899999999999997
Q ss_pred CC----------CcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEE---ECCC
Q 000054 2484 KA----------AQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSC---GGDG 2534 (2548)
Q Consensus 2484 ~T----------gell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSG---S~DG 2534 (2548)
.. ...+..++ .| - ..||...+.+ ..++||| |+++ |.|.
T Consensus 341 ~~~~~~~~~~~~~~v~~~~~-v~---y-----~~GH~~~~~~----~t~~pdGk~l~s~~k~s~dr 393 (441)
T d1qnia2 341 ADAIKHYNGDRVNYIRQKLD-VQ---Y-----QPGHNHASLT----ESRDADGKWLVVLSKFSKDR 393 (441)
T ss_dssp HHHHHHHTTCCCCCEEEEEE-CS---S-----CEEEEEETTT----TSTTCCCCEEEEEESCCGGG
T ss_pred chhhhhhccCCCceeEeccc-cc---c-----CCCCCccccc----cccCCCCcEEEecCcccccc
Confidence 41 12333331 11 1 1466544433 3789999 8888 5554
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.87 E-value=0.00026 Score=85.08 Aligned_cols=270 Identities=10% Similarity=-0.013 Sum_probs=138.1
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe---CCCcEEEEEc
Q 000054 2224 AFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA---LDGTVCTWQL 2300 (2548)
Q Consensus 2224 ~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS---~DGtVrVWDl 2300 (2548)
-++++|++++|.+... +.+..|.+.....+......+. ......+.++++++.++... ..++|..+.+
T Consensus 44 ~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~--------~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~ 114 (365)
T d1jofa_ 44 WMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPI--------GGHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp EEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEEC--------CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred EEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecC--------CCCcEEEEECCCCCEEEEEEecCCCCEEEEeEc
Confidence 4778899999887655 5678887764332322221111 12344566777777433322 2355555544
Q ss_pred CCCc-cccccc---C----cccee----ccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCc--ceeee--c
Q 000054 2301 EVGG-RSNVRP---M----ESCLC----FSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSS--RASIT--C 2364 (2548)
Q Consensus 2301 ~tgk-~i~i~p---~----~s~~t----~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~--v~sl~--g 2364 (2548)
.... ...... . ..... ...|... ..++|+|++++++. .....|.+|+.... +.. ..... .
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~-v~~sPdG~~l~v~d--~g~d~v~~~~~~~~-g~~~~~~~~~~~~ 190 (365)
T d1jofa_ 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHG-MVFDPTETYLYSAD--LTANKLWTHRKLAS-GEVELVGSVDAPD 190 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEE-EEECTTSSEEEEEE--TTTTEEEEEEECTT-SCEEEEEEEECSS
T ss_pred cCCCCcceeEeeeecceecCcccCcccCCCCcceE-EEECCCCCEEEEee--CCCCEEEEEEccCC-CceeeccceeecC
Confidence 2211 000000 0 00000 1112222 24899999988876 24567888876532 222 11221 2
Q ss_pred cCCCeEEEEEccCCCCCCCCCCEE-EEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCC
Q 000054 2365 HEGGARSISVFDNDLGSGSVSPLI-VTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQN 2443 (2548)
Q Consensus 2365 Hs~~VtSLafsP~dlg~gs~g~lL-VSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~s 2443 (2548)
...+...+.|+|+ ++++ ++...+++|.+||+.. .....+.... .....+.+.....
T Consensus 191 ~g~gPr~i~f~pd-------g~~~yv~~e~~~~V~v~~~~~-~~~~~~~~~~-----------~~~~~~~~~~~~~---- 247 (365)
T d1jofa_ 191 PGDHPRWVAMHPT-------GNYLYALMEAGNRICEYVIDP-ATHMPVYTHH-----------SFPLIPPGIPDRD---- 247 (365)
T ss_dssp TTCCEEEEEECTT-------SSEEEEEETTTTEEEEEEECT-TTCCEEEEEE-----------EEESSCTTCCCBC----
T ss_pred CCCceEEEEECCC-------CceEEEeccCCCEEEEEEecC-CCceEEEEee-----------eeccccccccccc----
Confidence 3567899999999 5555 5666789999999531 1122221110 0000000000000
Q ss_pred ceEEEcccCCCCCEEEEEEeCCCCEEEEEeC------CCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecE
Q 000054 2444 GMLWYIPKAHLGSVTRISTVPNTSLFLTGSK------DGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGV 2517 (2548)
Q Consensus 2444 v~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~------DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~V 2517 (2548)
.....+......+.++|+|++|+++.. .+.|..|++.....+....... + + ...+.. .
T Consensus 248 ----~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~--~-----~-~~~G~~----p 311 (365)
T d1jofa_ 248 ----PETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS--P-----T-PTSGGH----S 311 (365)
T ss_dssp ----TTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE--E-----C-SSCCTT----C
T ss_pred ----cccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEee--E-----E-EcCCCC----c
Confidence 000123445678899999999988743 2237777776432222110000 0 0 111111 2
Q ss_pred EEEEEcC-Ce---EEEEECCCcEEEEECCCCc
Q 000054 2518 TDIQVVS-RG---FLSCGGDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2518 tsLafSP-dG---LaSGS~DGtIrIWDL~sg~ 2545 (2548)
..++++| +| +++...+++|.+|+++++.
T Consensus 312 ~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 312 NAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp CCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred cEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 3458998 66 4466788999999987654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.82 E-value=0.0034 Score=70.09 Aligned_cols=201 Identities=12% Similarity=0.057 Sum_probs=113.3
Q ss_pred EEEEEEcCCCCEEEEEECC-C--eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC-CCcEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSN-T--HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DGTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~D-G--sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-DGtVrV 2297 (2548)
+..-+|||||+.||-.... + .+.+.+..++...... . +.+.+....|+|+|..++.... ++...+
T Consensus 41 ~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~~spdg~~i~~~~~~~~~~~~ 109 (269)
T d2hqsa1 41 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-S----------FPRHNGAPAFSPDGSKLAFALSKTGSLNL 109 (269)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE-C----------CSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred eeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEe-e----------eecccccceecCCCCeeeEeeecCCccce
Confidence 4678999999999965333 2 3566666555543222 1 3377889999999998887654 333333
Q ss_pred EEcCCCcccccccCccceeccCCccc-EEEEcCCCCEEEEEeccCCCCe--EEEEECCCCCCCcceeeeccCCCeEEEEE
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMD-VSYITSSGSVIAAAGHSSNGIN--VVVWDTLAPPTSSRASITCHEGGARSISV 2374 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~-V~afSpdGslLATgG~SS~DGt--VrIWDl~t~~~k~v~sl~gHs~~VtSLaf 2374 (2548)
+.......... ......... ...+++++..+.... ..++. |...+... .....+..+........|
T Consensus 110 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~ 178 (269)
T d2hqsa1 110 YVMDLASGQIR------QVTDGRSNNTEPTWFPDSQNLAFTS--DQAGRPQVYKVNING---GAPQRITWEGSQNQDADV 178 (269)
T ss_dssp EEEETTTCCEE------ECCCCSSCEEEEEECTTSSEEEEEE--CTTSSCEEEEEETTS---SCCEECCCSSSEEEEEEE
T ss_pred eecccccccce------eeeeccccccccccccccccceecc--cccCCceEeeeeccc---ccceeeeccccccccccc
Confidence 33322211110 011111112 223667776655544 24554 44455543 233344455667778889
Q ss_pred ccCCCCCCCCCCEEEEEe-CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCC
Q 000054 2375 FDNDLGSGSVSPLIVTGG-KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAH 2453 (2548)
Q Consensus 2375 sP~dlg~gs~g~lLVSGS-~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH 2453 (2548)
+|+ +..++..+ ..|...+|... ...+.. +. ..+
T Consensus 179 spd-------g~~~~~~~~~~~~~~i~~~~-~~~~~~-~~-------------------------------------~~~ 212 (269)
T d2hqsa1 179 SSD-------GKFMVMVSSNGGQQHIAKQD-LATGGV-QV-------------------------------------LSS 212 (269)
T ss_dssp CTT-------SSEEEEEEECSSCEEEEEEE-TTTCCE-EE-------------------------------------CCC
T ss_pred ccc-------cceeEEEeecCCceeeeEee-cccccc-eE-------------------------------------eec
Confidence 998 55555544 45555555532 222222 11 123
Q ss_pred CCCEEEEEEeCCCCEEEEEeC---CCcEEEEECCCCcEEE
Q 000054 2454 LGSVTRISTVPNTSLFLTGSK---DGDVKLWDAKAAQLVY 2490 (2548)
Q Consensus 2454 ~~~VtsLafSPdG~~LaSGS~---DGtIrIWDl~Tgell~ 2490 (2548)
........|+|||+.|+-.+. ...|.++++..+...+
T Consensus 213 ~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~ 252 (269)
T d2hqsa1 213 TFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR 252 (269)
T ss_dssp SSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE
T ss_pred CccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence 345567789999998875544 3478899998776543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.80 E-value=3.7e-05 Score=94.48 Aligned_cols=155 Identities=11% Similarity=0.026 Sum_probs=102.3
Q ss_pred EcCCCCEEEEEeccCCCCeEEEEECCCCCCCcce-----eeeccCCCeEEEEEccCCCCCCCCCCEEEEEeC--------
Q 000054 2327 ITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA-----SITCHEGGARSISVFDNDLGSGSVSPLIVTGGK-------- 2393 (2548)
Q Consensus 2327 fSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~-----sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~-------- 2393 (2548)
|.++++++.. +|+.+.+||+.++ +... .+..|...|.++.|+|+ ++.|+.++.
T Consensus 24 W~~d~~~~~~-----~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~i~~~~~SpD-------g~~i~~~~~~~~~~r~s 89 (470)
T d2bgra1 24 WISDHEYLYK-----QENNILVFNAEYG--NSSVFLENSTFDEFGHSINDYSISPD-------GQFILLEYNYVKQWRHS 89 (470)
T ss_dssp ECSSSEEEEE-----SSSCEEEEETTTC--CEEEEECTTTTTTSSSCCCEEEECTT-------SSEEEEEEEEEECSSSC
T ss_pred eCCCCEEEEE-----cCCcEEEEECCCC--CEEEEEchhhhhhccCccceeEECCC-------CCEEEEEECCcceeeec
Confidence 6678877764 5789999999873 3332 34456678999999999 788887753
Q ss_pred -CCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEE
Q 000054 2394 -GGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTG 2472 (2548)
Q Consensus 2394 -DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSG 2472 (2548)
++.+.+|| +.+++. ..+ ..|...+..+.|+|||+.+|..
T Consensus 90 ~~~~~~l~d---~~~~~~-~~l------------------------------------~~~~~~~~~~~~SPDG~~ia~~ 129 (470)
T d2bgra1 90 YTASYDIYD---LNKRQL-ITE------------------------------------ERIPNNTQWVTWSPVGHKLAYV 129 (470)
T ss_dssp EEEEEEEEE---TTTTEE-CCS------------------------------------SCCCTTEEEEEECSSTTCEEEE
T ss_pred cCceEEEEE---CCCCcc-ccc------------------------------------ccCCccccccccccCcceeeEe
Confidence 56788999 444443 222 5577889999999999999986
Q ss_pred eCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCce-----eecEEEEEEcCCe--EEEEECCCc-EEEEEC
Q 000054 2473 SKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVV-----RAGVTDIQVVSRG--FLSCGGDGS-VKLIQL 2541 (2548)
Q Consensus 2473 S~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V-----~a~VtsLafSPdG--LaSGS~DGt-IrIWDL 2541 (2548)
.|+.+.+|+..+++..+.......... +.+..+.+ ......+.||||| |+....|.+ ++.|.+
T Consensus 130 -~~~~l~~~~~~~g~~~~~t~~~~~~~~-----~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 130 -WNNDIYVKIEPNLPSYRITWTGKEDII-----YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp -ETTEEEEESSTTSCCEECCSCCBTTTE-----EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred -ecccceEEECCCCceeeeeeccCCCcc-----cccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence 577999999999887654321111111 11211111 0112345799999 777665543 555544
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.75 E-value=0.0011 Score=76.92 Aligned_cols=201 Identities=12% Similarity=0.026 Sum_probs=122.3
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLE 2301 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~ 2301 (2548)
+..++++|||+++++...+++|..|+.+.. . ..+.. ..+.+.+++|+++|+.+++...++.+..|+..
T Consensus 30 ~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~-~-~~~~~----------~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~ 97 (302)
T d2p4oa1 30 LENLASAPDGTIFVTNHEVGEIVSITPDGN-Q-QIHAT----------VEGKVSGLAFTSNGDLVATGWNADSIPVVSLV 97 (302)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCC-E-EEEEE----------CSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred cCCEEECCCCCEEEEeCCCCEEEEEeCCCC-E-EEEEc----------CCCCcceEEEcCCCCeEEEecCCceEEEEEec
Confidence 467889999999999999998888875533 2 22221 12678999999999999998888998888875
Q ss_pred CCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcce--------eeeccCCCeEE
Q 000054 2302 VGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRA--------SITCHEGGARS 2371 (2548)
Q Consensus 2302 tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~--------sl~gHs~~VtS 2371 (2548)
...... . ........... ..+.++|+++++.. .++.+..+|.......... ........+..
T Consensus 98 ~~~~~~-~----~~~~~~~~~~~n~i~~~~~g~~~v~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng 169 (302)
T d2p4oa1 98 KSDGTV-E----TLLTLPDAIFLNGITPLSDTQYLTADS---YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG 169 (302)
T ss_dssp CTTSCE-E----EEEECTTCSCEEEEEESSSSEEEEEET---TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred ccccce-e----eccccCCccccceeEEccCCCEEeecc---ccccceeeeccCCcceeEecCCccceeeccCccccccc
Confidence 432110 0 00011111122 23778888777753 6778888887642111000 00011224556
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEccc
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPK 2451 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~ 2451 (2548)
+.+..+ .++++.+..+.|..+|+.. ....... ..+
T Consensus 170 i~~~~~--------~l~~~~~~~~~i~~~~~~~---~~~~~~~------------------------------~~~---- 204 (302)
T d2p4oa1 170 LKRFGN--------FLYVSNTEKMLLLRIPVDS---TDKPGEP------------------------------EIF---- 204 (302)
T ss_dssp EEEETT--------EEEEEETTTTEEEEEEBCT---TSCBCCC------------------------------EEE----
T ss_pred ccccCC--------ceeeecCCCCeEEeccccc---ccccccc------------------------------ccc----
Confidence 665543 3677777888888887431 1111000 000
Q ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcE
Q 000054 2452 AHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQL 2488 (2548)
Q Consensus 2452 gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgel 2488 (2548)
........++++++|.++++...++.|..++.. ++.
T Consensus 205 ~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~ 240 (302)
T d2p4oa1 205 VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST 240 (302)
T ss_dssp EESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE
T ss_pred cCCCCCcceEECCCCCEEEEEcCCCcEEEECCC-CCE
Confidence 012234569999999998888889999999875 443
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.69 E-value=0.0062 Score=67.84 Aligned_cols=217 Identities=10% Similarity=0.097 Sum_probs=118.1
Q ss_pred eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCC---cEEEEEcCCCcccccccCccceecc
Q 000054 2242 HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDG---TVCTWQLEVGGRSNVRPMESCLCFS 2318 (2548)
Q Consensus 2242 sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DG---tVrVWDl~tgk~i~i~p~~s~~t~~ 2318 (2548)
.|.|-|.+......... +...+.+-+|||||++||....+. .+.+.+...+.... ..
T Consensus 20 ~l~i~d~dG~~~~~l~~-----------~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~---------~~ 79 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVHR-----------SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ---------VA 79 (269)
T ss_dssp EEEEEETTSCSCEEEEE-----------ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE---------EE
T ss_pred EEEEEcCCCCCcEEEec-----------CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE---------Ee
Confidence 57777876444333332 126688999999999998765443 45555555443211 12
Q ss_pred CCcc--cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCc
Q 000054 2319 SHAM--DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSGSVSPLIVTGGKGGD 2396 (2548)
Q Consensus 2319 gH~~--~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGt 2396 (2548)
.+.. ....++|+|+.++.... .++...++..... ..................+++.. ...+++...+|.
T Consensus 80 ~~~~~~~~~~~spdg~~i~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~g~ 150 (269)
T d2hqsa1 80 SFPRHNGAPAFSPDGSKLAFALS--KTGSLNLYVMDLA-SGQIRQVTDGRSNNTEPTWFPDS------QNLAFTSDQAGR 150 (269)
T ss_dssp CCSSCEEEEEECTTSSEEEEEEC--TTSSCEEEEEETT-TCCEEECCCCSSCEEEEEECTTS------SEEEEEECTTSS
T ss_pred eeecccccceecCCCCeeeEeee--cCCccceeecccc-cccceeeeecccccccccccccc------ccceecccccCC
Confidence 2222 22358999998887652 3433333333221 11222222334444455556553 345666666776
Q ss_pred EEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCC
Q 000054 2397 VGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDG 2476 (2548)
Q Consensus 2397 VrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DG 2476 (2548)
..+|... ...+..... ..+........|+|+++.++..+.++
T Consensus 151 ~~i~~~~-~~~~~~~~~-------------------------------------~~~~~~~~~~~~spdg~~~~~~~~~~ 192 (269)
T d2hqsa1 151 PQVYKVN-INGGAPQRI-------------------------------------TWEGSQNQDADVSSDGKFMVMVSSNG 192 (269)
T ss_dssp CEEEEEE-TTSSCCEEC-------------------------------------CCSSSEEEEEEECTTSSEEEEEEECS
T ss_pred ceEeeee-cccccceee-------------------------------------ecccccccccccccccceeEEEeecC
Confidence 5555532 222221111 22445667788999999888876644
Q ss_pred ---cEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEE---CCCcEEEEECCCCc
Q 000054 2477 ---DVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCG---GDGSVKLIQLEDYQ 2545 (2548)
Q Consensus 2477 ---tIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS---~DGtIrIWDL~sg~ 2545 (2548)
.|.+.|...+.... . . +... .....||||| |+-.+ ....|.+++++++.
T Consensus 193 ~~~~i~~~~~~~~~~~~-~--------------~-~~~~----~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~ 249 (269)
T d2hqsa1 193 GQQHIAKQDLATGGVQV-L--------------S-STFL----DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF 249 (269)
T ss_dssp SCEEEEEEETTTCCEEE-C--------------C-CSSS----CEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC
T ss_pred CceeeeEeecccccceE-e--------------e-cCcc----ccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 44455555554322 1 1 1111 2345899999 55322 34578899998764
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.59 E-value=0.0034 Score=71.21 Aligned_cols=233 Identities=12% Similarity=0.084 Sum_probs=134.9
Q ss_pred EEEEEEcCCCCEEEEE-ECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRPFFLVG-SSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASG-S~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
-..++++++|.++++. +..+.+..++..+.. .......+ ......++++++|+.+++...++.+++++-
T Consensus 16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~--~~~~~~~~--------~~~p~gvav~~~g~i~v~d~~~~~i~~~~~ 85 (260)
T d1rwia_ 16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG--TTVLPFNG--------LYQPQGLAVDGAGTVYVTDFNNRVVTLAAG 85 (260)
T ss_dssp EEEEEECTTCCEEEEECSSSCEEEEEC----C--EEECCCCS--------CCSCCCEEECTTCCEEEEETTTEEEEECTT
T ss_pred CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCce--EEEeccCC--------ccCceEEEEcCCCCEEEeeeeeceeeeeee
Confidence 3678888999977664 455667666654332 12111111 134567899999998777766667766654
Q ss_pred CCCcccccccCccceeccCCcc-cEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeee-ccCCCeEEEEEccCC
Q 000054 2301 EVGGRSNVRPMESCLCFSSHAM-DVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASIT-CHEGGARSISVFDND 2378 (2548)
Q Consensus 2301 ~tgk~i~i~p~~s~~t~~gH~~-~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~-gHs~~VtSLafsP~d 2378 (2548)
..+... .+ ..+... .-.++.++++++++-. .+..+..++... .....+. .-......+++.++
T Consensus 86 ~~~~~~--~~------~~~~~~p~~iavd~~g~i~v~d~---~~~~~~~~~~~~---~~~~~~~~~~~~~p~~i~~~~~- 150 (260)
T d1rwia_ 86 SNNQTV--LP------FDGLNYPEGLAVDTQGAVYVADR---GNNRVVKLAAGS---KTQTVLPFTGLNDPDGVAVDNS- 150 (260)
T ss_dssp CSCCEE--CC------CCSCCSEEEEEECTTCCEEEEEG---GGTEEEEECTTC---SSCEECCCCSCCSCCEEEECTT-
T ss_pred ccceee--ee------eeeeeecccccccccceeEeecc---cccccccccccc---ceeeeeeecccCCcceeeecCC-
Confidence 433221 11 111111 1124778888776642 556677777643 1211111 12245578888887
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEE
Q 000054 2379 LGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVT 2458 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vt 2458 (2548)
+.++++...++.|..+|.. .... ... ....-....
T Consensus 151 ------g~~~v~~~~~~~i~~~d~~---~~~~-~~~-----------------------------------~~~~~~~p~ 185 (260)
T d1rwia_ 151 ------GNVYVTDTDNNRVVKLEAE---SNNQ-VVL-----------------------------------PFTDITAPW 185 (260)
T ss_dssp ------CCEEEEEGGGTEEEEECTT---TCCE-EEC-----------------------------------CCSSCCSEE
T ss_pred ------CCEeeeccccccccccccc---ccee-eee-----------------------------------eccccCCCc
Confidence 6788888888889999832 2211 111 012334567
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccCCCCceeecEEEEEEcCCe--EEEEECCCcE
Q 000054 2459 RISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRGFGGVVRAGVTDIQVVSRG--FLSCGGDGSV 2536 (2548)
Q Consensus 2459 sLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~GH~~~V~a~VtsLafSPdG--LaSGS~DGtI 2536 (2548)
.|+++++|.++++-...+.|..++...... ..+. ..+- .....|+++++| +++-..+++|
T Consensus 186 gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~------------~~~~-----~~P~~i~~d~~g~l~vad~~~~rI 247 (260)
T d1rwia_ 186 GIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLP------------FTGL-----NTPLAVAVDSDRTVYVADRGNDRV 247 (260)
T ss_dssp EEEECTTCCEEEEETTTTEEEEECTTCSCC-EECC------------CCSC-----CCEEEEEECTTCCEEEEEGGGTEE
T ss_pred cceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEc------------cCCC-----CCeEEEEEeCCCCEEEEECCCCEE
Confidence 899999999988888888888887654332 1110 0111 124678999998 5565666767
Q ss_pred EEEECC
Q 000054 2537 KLIQLE 2542 (2548)
Q Consensus 2537 rIWDL~ 2542 (2548)
+..+..
T Consensus 248 ~~i~~~ 253 (260)
T d1rwia_ 248 VKLTSL 253 (260)
T ss_dssp EEECCC
T ss_pred EEEeCC
Confidence 665543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.58 E-value=0.017 Score=67.55 Aligned_cols=214 Identities=12% Similarity=0.044 Sum_probs=126.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC--Cc--EEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD--GT--VCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D--Gt--VrV 2297 (2548)
.-.++|.++|+++++-..++.|+.|+.+++.....+.. .......++++++|+.+++...+ .. +..
T Consensus 42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~----------~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~ 111 (319)
T d2dg1a1 42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS----------HKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA 111 (319)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC----------SSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred cEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeC----------CCCCeeEEEECCCCCEEEEecCCCccceeEEE
Confidence 35778899999888888889999888877665544422 12457899999999977765433 23 333
Q ss_pred EEcCCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEecc---CCCCeEEEEECCCCCCCcceeeeccCCCeEEE
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHS---SNGINVVVWDTLAPPTSSRASITCHEGGARSI 2372 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~S---S~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSL 2372 (2548)
.+..++....... ........ ..+.++|++.++.... ...+.+..++.. ++.+..+...-...+.+
T Consensus 112 ~~~~~~~~~~~~~------~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d---g~~~~~~~~~~~~pnGi 182 (319)
T d2dg1a1 112 ATENGDNLQDIIE------DLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD---FRTVTPIIQNISVANGI 182 (319)
T ss_dssp ECTTSCSCEEEEC------SSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT---SCCEEEEEEEESSEEEE
T ss_pred EcCCCceeeeecc------CCCcccCCcceeEEeccceeecccccccccCcceeEEEecc---cceeEEEeeccceeeee
Confidence 4433332111000 00001111 2478899877764200 012335545543 33333333334566889
Q ss_pred EEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccC
Q 000054 2373 SVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKA 2452 (2548)
Q Consensus 2373 afsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~g 2452 (2548)
+|+|+. ..+.++-+..+.|..||+.. .+....... ...... ..
T Consensus 183 a~s~dg------~~lyvad~~~~~I~~~d~~~--~g~~~~~~~----------------------------~~~~~~-~~ 225 (319)
T d2dg1a1 183 ALSTDE------KVLWVTETTANRLHRIALED--DGVTIQPFG----------------------------ATIPYY-FT 225 (319)
T ss_dssp EECTTS------SEEEEEEGGGTEEEEEEECT--TSSSEEEEE----------------------------EEEEEE-CC
T ss_pred eecccc------ceEEEecccCCceEEEEEcC--CCceecccc----------------------------ceeeec-cC
Confidence 999983 33556667788999998531 121111110 000000 11
Q ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2453 HLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2453 H~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
....-..++++++|++.++....|.|.++|- +|+.+.++
T Consensus 226 ~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i 264 (319)
T d2dg1a1 226 GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQI 264 (319)
T ss_dssp SSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEE
T ss_pred CccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEE
Confidence 1223568999999999999889999999995 78988877
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.31 E-value=0.0055 Score=70.86 Aligned_cols=163 Identities=8% Similarity=-0.035 Sum_probs=101.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCce-eEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEc
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKA-TATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQL 2300 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~-l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl 2300 (2548)
+.+++|+|+|++++++..++.+..++...... ...+...+ .......+.+.++++++++.+.++.+..++.
T Consensus 70 ~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~ 141 (302)
T d2p4oa1 70 VSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP--------DAIFLNGITPLSDTQYLTADSYRGAIWLIDV 141 (302)
T ss_dssp EEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT--------TCSCEEEEEESSSSEEEEEETTTTEEEEEET
T ss_pred cceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccC--------CccccceeEEccCCCEEeeccccccceeeec
Confidence 57889999999999998888888888764322 22222111 2256899999999999998888898888887
Q ss_pred CCCcccccccCc--cceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCC
Q 000054 2301 EVGGRSNVRPME--SCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDND 2378 (2548)
Q Consensus 2301 ~tgk~i~i~p~~--s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~d 2378 (2548)
..+......... ..............+..++..+..+. +.++.|..++..............+......+++.++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~d- 218 (302)
T d2p4oa1 142 VQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSN--TEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVE- 218 (302)
T ss_dssp TTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEE--TTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTT-
T ss_pred cCCcceeEecCCccceeeccCcccccccccccCCceeeec--CCCCeEEeccccccccccccccccCCCCCcceEECCC-
Confidence 765321110000 00001111112223444556666655 4788888888764211112222223445667888887
Q ss_pred CCCCCCCCEEEEEeCCCcEEEEe
Q 000054 2379 LGSGSVSPLIVTGGKGGDVGIHD 2401 (2548)
Q Consensus 2379 lg~gs~g~lLVSGS~DGtVrLWD 2401 (2548)
+.+.++...++.|..++
T Consensus 219 ------G~l~va~~~~~~V~~i~ 235 (302)
T d2p4oa1 219 ------GNLYGATHIYNSVVRIA 235 (302)
T ss_dssp ------CCEEEECBTTCCEEEEC
T ss_pred ------CCEEEEEcCCCcEEEEC
Confidence 67888888888888887
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.09 E-value=0.022 Score=64.86 Aligned_cols=206 Identities=13% Similarity=0.105 Sum_probs=122.2
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCcccccccCc-cceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEE
Q 000054 2271 LASISALQFDHYGHRFASAALDGTVCTWQLEVGGRSNVRPME-SCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVW 2349 (2548)
Q Consensus 2271 ~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i~i~p~~-s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIW 2349 (2548)
...-..|+++++|+.+++-..++.|++||.+ |..+...... ...........+......+..+++.. +.++.|..+
T Consensus 22 f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~i~~~ 98 (279)
T d1q7fa_ 22 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTER--SPTHQIQIY 98 (279)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEEC--GGGCEEEEE
T ss_pred ECCccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceecc--CCccccccc
Confidence 4567899999999988877788899999975 3322111100 00000011122332333445555543 255677777
Q ss_pred ECCCCCCCcceeee-ccCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCcccccc
Q 000054 2350 DTLAPPTSSRASIT-CHEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAH 2428 (2548)
Q Consensus 2350 Dl~t~~~k~v~sl~-gHs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~v 2428 (2548)
+.. +.....+. ........+++.++ +.++++....+.+.++|. .++.+..+
T Consensus 99 ~~~---g~~~~~~~~~~~~~p~~~avd~~-------G~i~v~~~~~~~~~~~~~----~g~~~~~~-------------- 150 (279)
T d1q7fa_ 99 NQY---GQFVRKFGATILQHPRGVTVDNK-------GRIIVVECKVMRVIIFDQ----NGNVLHKF-------------- 150 (279)
T ss_dssp CTT---SCEEEEECTTTCSCEEEEEECTT-------SCEEEEETTTTEEEEECT----TSCEEEEE--------------
T ss_pred ccc---ccceeecCCCcccccceeccccC-------CcEEEEeeccceeeEecc----CCceeecc--------------
Confidence 754 34444442 23345677777766 566666666666777662 23433332
Q ss_pred ccCCCCCCccCCCCCceEEEcccCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEecccccccccccCcccC
Q 000054 2429 ADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHWSKLHERHTFLQPSSRG 2508 (2548)
Q Consensus 2429 afSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL~~~Hs~hsfl~~tl~G 2508 (2548)
. ...+......+++++++.++++....+.|++||. +|+.+.++- . .|
T Consensus 151 -------------------g-~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g--~----------~g 197 (279)
T d1q7fa_ 151 -------------------G-CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIG--G----------EG 197 (279)
T ss_dssp -------------------E-CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEES--C----------TT
T ss_pred -------------------c-ccccccccceeeeccceeEEeeeccccceeeeec-CCceeeeec--c----------cc
Confidence 0 0235567788999999999998888999999996 567776661 0 11
Q ss_pred CCCceeecEEEEEEcCCe-E-EEEE-CCCcEEEEECCCC
Q 000054 2509 FGGVVRAGVTDIQVVSRG-F-LSCG-GDGSVKLIQLEDY 2544 (2548)
Q Consensus 2509 H~~~V~a~VtsLafSPdG-L-aSGS-~DGtIrIWDL~sg 2544 (2548)
+. .....|+++++| + ++-+ .++.|.+|+.+..
T Consensus 198 ~~----~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~ 232 (279)
T d1q7fa_ 198 IT----NYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ 232 (279)
T ss_dssp TS----CSEEEEEECTTCCEEEEECSSSCEEEEECTTSC
T ss_pred cc----cCCcccccccCCeEEEEECCCCcEEEEECCCCC
Confidence 11 123567899999 4 4433 3456888885543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.03 E-value=0.015 Score=65.58 Aligned_cols=193 Identities=11% Similarity=0.110 Sum_probs=116.5
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
..++++++|.++++....+.+++++-.++..+.... ......+|++.++++.+++-..+..+..++...
T Consensus 60 ~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~-----------~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~ 128 (260)
T d1rwia_ 60 QGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFD-----------GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS 128 (260)
T ss_dssp CCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCC-----------SCCSEEEEEECTTCCEEEEEGGGTEEEEECTTC
T ss_pred eEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeee-----------eeeecccccccccceeEeecccccccccccccc
Confidence 345677999988887777777766544443332211 125678999999999877766666777776654
Q ss_pred CcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCCCCC
Q 000054 2303 GGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDLGSG 2382 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dlg~g 2382 (2548)
.... .... ..+ ..... .+++++|+++++.. .++.|..+|... ..........-.....|++.++
T Consensus 129 ~~~~-~~~~---~~~-~~p~~-i~~~~~g~~~v~~~---~~~~i~~~d~~~--~~~~~~~~~~~~~p~gi~~d~~----- 192 (260)
T d1rwia_ 129 KTQT-VLPF---TGL-NDPDG-VAVDNSGNVYVTDT---DNNRVVKLEAES--NNQVVLPFTDITAPWGIAVDEA----- 192 (260)
T ss_dssp SSCE-ECCC---CSC-CSCCE-EEECTTCCEEEEEG---GGTEEEEECTTT--CCEEECCCSSCCSEEEEEECTT-----
T ss_pred ceee-eeee---ccc-CCcce-eeecCCCCEeeecc---cccccccccccc--ceeeeeeccccCCCccceeeee-----
Confidence 3211 1110 001 11122 35778998777754 678899998764 2222222234466788999887
Q ss_pred CCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEEEEE
Q 000054 2383 SVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTRIST 2462 (2548)
Q Consensus 2383 s~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~VtsLaf 2462 (2548)
+.++++....+.|..++.. ... .... ....-.....|++
T Consensus 193 --g~l~vsd~~~~~i~~~~~~---~~~-~~~~-----------------------------------~~~~~~~P~~i~~ 231 (260)
T d1rwia_ 193 --GTVYVTEHNTNQVVKLLAG---STT-STVL-----------------------------------PFTGLNTPLAVAV 231 (260)
T ss_dssp --CCEEEEETTTTEEEEECTT---CSC-CEEC-----------------------------------CCCSCCCEEEEEE
T ss_pred --eeeeeeecCCCEEEEEeCC---CCe-EEEE-----------------------------------ccCCCCCeEEEEE
Confidence 6788888778888888721 111 1111 0112234578999
Q ss_pred eCCCCEEEEEeCCCcEEEEEC
Q 000054 2463 VPNTSLFLTGSKDGDVKLWDA 2483 (2548)
Q Consensus 2463 SPdG~~LaSGS~DGtIrIWDl 2483 (2548)
+++|.++++-..++.|+..+.
T Consensus 232 d~~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 232 DSDRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp CTTCCEEEEEGGGTEEEEECC
T ss_pred eCCCCEEEEECCCCEEEEEeC
Confidence 999988877666666665543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.91 E-value=0.011 Score=73.10 Aligned_cols=232 Identities=11% Similarity=0.038 Sum_probs=125.2
Q ss_pred EcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe---------CCCcEEE
Q 000054 2227 SHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA---------LDGTVCT 2297 (2548)
Q Consensus 2227 fSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS---------~DGtVrV 2297 (2548)
|.+++.++. -..+|.|.+||..+++....+.... ...-.+....|+||+++++.+. ..|.+.+
T Consensus 24 W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i 95 (465)
T d1xfda1 24 WISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKK-------IESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVL 95 (465)
T ss_dssp BSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTT-------TTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred EeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCcc-------ccccccceeEECCCCCeEEEEEcccceeEeeccccEEE
Confidence 556666543 3567789999999887644443211 1223567888999999988764 3578889
Q ss_pred EEcCCCcccccccCccceeccCCcccE--EEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee-eccCC-------
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMDV--SYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-TCHEG------- 2367 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V--~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-~gHs~------- 2367 (2548)
+|+.++....+.+ .......+ ..|+|||+.+|.. .++.|.+.+... +..++.. .+-.+
T Consensus 96 ~d~~~~~~~~l~~------~~~~~~~l~~~~wSPDG~~iafv----~~~nl~~~~~~~--~~~~~lt~~g~~~~i~nG~~ 163 (465)
T d1xfda1 96 SKIPHGDPQSLDP------PEVSNAKLQYAGWGPKGQQLIFI----FENNIYYCAHVG--KQAIRVVSTGKEGVIYNGLS 163 (465)
T ss_dssp EESSSCCCEECCC------TTCCSCCCSBCCBCSSTTCEEEE----ETTEEEEESSSS--SCCEEEECCCBTTTEEEEEC
T ss_pred EEccCCceeeccC------ccCCccccceeeeccCCceEEEE----ecceEEEEecCC--CceEEEecccCcceeecccc
Confidence 9998875433211 11122222 2489999999987 478888888764 2222221 12111
Q ss_pred ----------CeEEEEEccCCCCCCCCCCEEEEEe-CCCcEEEEeCCcccc--CceeeeecCCCC-CCCccccccccCCC
Q 000054 2368 ----------GARSISVFDNDLGSGSVSPLIVTGG-KGGDVGIHDFRYIAT--GKTKKHKHSDRG-GSSINTCAHADAQT 2433 (2548)
Q Consensus 2368 ----------~VtSLafsP~dlg~gs~g~lLVSGS-~DGtVrLWDLR~l~T--Gk~l~tl~~~~~-~s~~~~~~vafSpd 2433 (2548)
.-..+.|+|+ |+.|+... .+..|..+.+..... .......+.+.. ...+......+.-
T Consensus 164 d~vyeee~~~~~~a~~WSPD-------gk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~- 235 (465)
T d1xfda1 164 DWLYEEEILKTHIAHWWSPD-------GTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL- 235 (465)
T ss_dssp CHHHHHTTSSSSEEEEECTT-------SSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES-
T ss_pred chhhhhhhccccceEEECCC-------CCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEec-
Confidence 1246779999 77777765 345566655321100 011111110000 0000000000000
Q ss_pred CCCccCCCCCceEEEc----ccCCCCCEEEEEEeCCCCEEEEEeC-C---CcEEEEECCCCcEEEEe
Q 000054 2434 GSGSKPGDQNGMLWYI----PKAHLGSVTRISTVPNTSLFLTGSK-D---GDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2434 Gk~v~s~D~sv~Iwdi----~~gH~~~VtsLafSPdG~~LaSGS~-D---GtIrIWDl~Tgell~tL 2492 (2548)
..+...+... ......-+..+.|.|++++++.... + ..|.++|..+|++...+
T Consensus 236 ------~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~ 296 (465)
T d1xfda1 236 ------NGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH 296 (465)
T ss_dssp ------SSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred ------CCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEE
Confidence 0011111100 1123335788999999987766533 2 26888999999876544
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.83 E-value=0.082 Score=65.03 Aligned_cols=108 Identities=10% Similarity=0.085 Sum_probs=67.0
Q ss_pred EEEEEEcCCCCEEEEEE---------CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC
Q 000054 2222 TRAFSSHPLRPFFLVGS---------SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD 2292 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS---------~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D 2292 (2548)
+....++|||++++.+. ..+...++|+.+++.... .. .....+.+....|+|||+.+|-.. +
T Consensus 63 ~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l-~~-------~~~~~~~l~~~~wSPDG~~iafv~-~ 133 (465)
T d1xfda1 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSL-DP-------PEVSNAKLQYAGWGPKGQQLIFIF-E 133 (465)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEEC-CC-------TTCCSCCCSBCCBCSSTTCEEEEE-T
T ss_pred cceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeec-cC-------ccCCccccceeeeccCCceEEEEe-c
Confidence 46678899999988753 357789999998764332 11 111224566789999999998765 5
Q ss_pred CcEEEEEcCCCcccccccCcc-ceeccCCc-----------ccEEEEcCCCCEEEEEe
Q 000054 2293 GTVCTWQLEVGGRSNVRPMES-CLCFSSHA-----------MDVSYITSSGSVIAAAG 2338 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s-~~t~~gH~-----------~~V~afSpdGslLATgG 2338 (2548)
+.|.+.+..++....+..... ...+.|.. ....+|||||+.||..-
T Consensus 134 ~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~ 191 (465)
T d1xfda1 134 NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA 191 (465)
T ss_dssp TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred ceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence 678888776654332211100 01111111 12335899999999864
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=96.81 E-value=0.039 Score=64.34 Aligned_cols=201 Identities=12% Similarity=0.155 Sum_probs=116.4
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC----------
Q 000054 2223 RAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD---------- 2292 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D---------- 2292 (2548)
..+.++++|..++++...+.|...+.+.+..........+ ........+++.++|+..++-...
T Consensus 74 ~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g------~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~ 147 (314)
T d1pjxa_ 74 AGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEG------RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRS 147 (314)
T ss_dssp EEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTS------CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBT
T ss_pred eeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccc------cccCCCcEEEECCCCCEEEecCccCcccccccce
Confidence 6788999999888887777788888765532221111111 112346789999999987764321
Q ss_pred ---CcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCC----EEEEEeccCCCCeEEEEECCCCCCCc-----ce
Q 000054 2293 ---GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGS----VIAAAGHSSNGINVVVWDTLAPPTSS-----RA 2360 (2548)
Q Consensus 2293 ---GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGs----lLATgG~SS~DGtVrIWDl~t~~~k~-----v~ 2360 (2548)
..=++|.+......... ...+ ...+.+ +++++++ .+.++. +..+.|..||+... +.. ..
T Consensus 148 ~~~~~G~v~~~~~dg~~~~~----~~~~-~~pNGi-~~~~d~d~~~~~lyv~d--~~~~~i~~~d~~~~-g~~~~~~~~~ 218 (314)
T d1pjxa_ 148 MQEKFGSIYCFTTDGQMIQV----DTAF-QFPNGI-AVRHMNDGRPYQLIVAE--TPTKKLWSYDIKGP-AKIENKKVWG 218 (314)
T ss_dssp TSSSCEEEEEECTTSCEEEE----EEEE-SSEEEE-EEEECTTSCEEEEEEEE--TTTTEEEEEEEEET-TEEEEEEEEE
T ss_pred eccCCceEEEEeecCceeEe----eCCc-ceeeee-EECCCCCcceeEEEEEe--ecccceEEeeccCc-cccceeeEEE
Confidence 11133333321111000 0000 111122 3555543 455554 47888988887532 221 11
Q ss_pred eeec-cCCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccC
Q 000054 2361 SITC-HEGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKP 2439 (2548)
Q Consensus 2361 sl~g-Hs~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s 2439 (2548)
.+.+ +......+++..+ +++.++....+.|.+|| ...++.+..+
T Consensus 219 ~~~~~~~~~pdGiavD~~-------GnlyVa~~~~g~I~~~d---p~~g~~~~~i------------------------- 263 (314)
T d1pjxa_ 219 HIPGTHEGGADGMDFDED-------NNLLVANWGSSHIEVFG---PDGGQPKMRI------------------------- 263 (314)
T ss_dssp ECCCCSSCEEEEEEEBTT-------CCEEEEEETTTEEEEEC---TTCBSCSEEE-------------------------
T ss_pred EccccccccceeeEEecC-------CcEEEEEcCCCEEEEEe---CCCCEEEEEE-------------------------
Confidence 1111 2234567888777 77888888889999999 4445443333
Q ss_pred CCCCceEEEcccCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECC
Q 000054 2440 GDQNGMLWYIPKAHLGSVTRISTVPNTS-LFLTGSKDGDVKLWDAK 2484 (2548)
Q Consensus 2440 ~D~sv~Iwdi~~gH~~~VtsLafSPdG~-~LaSGS~DGtIrIWDl~ 2484 (2548)
.......++++|.|+++ +++|.+.+|.|...++.
T Consensus 264 -----------~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 264 -----------RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp -----------ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred -----------ECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 22345678999999986 55666778888888875
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=96.75 E-value=0.015 Score=69.27 Aligned_cols=170 Identities=11% Similarity=0.102 Sum_probs=98.9
Q ss_pred EEEEEEcCCCCEEEEEEC-CCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEE-eCCCcEEEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSS-NTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASA-ALDGTVCTWQ 2299 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~-DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSG-S~DGtVrVWD 2299 (2548)
+.++.|+|+|+++++++. ...|.+|+......+........ .......+.++|+|+++++++. ..+++|.+|+
T Consensus 147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~-----~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~ 221 (365)
T d1jofa_ 147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDA-----PDPGDHPRWVAMHPTGNYLYALMEAGNRICEYV 221 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEEC-----SSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceee-----cCCCCceEEEEECCCCceEEEeccCCCEEEEEE
Confidence 578999999998887653 45788888764332222211110 1122578999999999988555 4678999999
Q ss_pred cCCCcccccccCcccee-----------ccCCcc--cEEEEcCCCCEEEEEecc---CCCCeEEEEECCCCCCCccee--
Q 000054 2300 LEVGGRSNVRPMESCLC-----------FSSHAM--DVSYITSSGSVIAAAGHS---SNGINVVVWDTLAPPTSSRAS-- 2361 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t-----------~~gH~~--~V~afSpdGslLATgG~S---S~DGtVrIWDl~t~~~k~v~s-- 2361 (2548)
++.++............ ...+.. ....++|+|++++++... .....|..|++... +.....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~-g~~~~~~~ 300 (365)
T d1jofa_ 222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC-GSIEKQLF 300 (365)
T ss_dssp ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT-SCEEEEEE
T ss_pred ecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCC-CceeeEeE
Confidence 97654221110000000 001111 122489999998886421 11234777776541 221111
Q ss_pred ---eeccCCCeEEEEEccCCCCCCCCCCEEEEE-eCCCcEEEEeCC
Q 000054 2362 ---ITCHEGGARSISVFDNDLGSGSVSPLIVTG-GKGGDVGIHDFR 2403 (2548)
Q Consensus 2362 ---l~gHs~~VtSLafsP~dlg~gs~g~lLVSG-S~DGtVrLWDLR 2403 (2548)
..........++++|.+ +++|+++ ..++.|.+|+++
T Consensus 301 ~~~~~~~G~~p~~i~~~p~~------G~~l~va~~~s~~v~v~~~~ 340 (365)
T d1jofa_ 301 LSPTPTSGGHSNAVSPCPWS------DEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp EEECSSCCTTCCCEEECTTC------TTEEEEECSSSCEEEEEEEE
T ss_pred eeEEEcCCCCccEEEecCCC------CCEEEEEeCCCCeEEEEEEe
Confidence 11223456778898854 6766555 578999999854
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.41 E-value=0.039 Score=60.99 Aligned_cols=99 Identities=12% Similarity=0.121 Sum_probs=58.6
Q ss_pred cCC--CCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC-CC-----cEEEEE
Q 000054 2228 HPL--RPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL-DG-----TVCTWQ 2299 (2548)
Q Consensus 2228 SPd--G~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~-DG-----tVrVWD 2299 (2548)
+|+ |+.++-.+ +|.|.+.|+.+++... +.. +.+.+...+|||||++||.... ++ .|.+++
T Consensus 7 sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~-Lt~----------~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~ 74 (281)
T d1k32a2 7 NPDIHGDRIIFVC-CDDLWEHDLKSGSTRK-IVS----------NLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYN 74 (281)
T ss_dssp EEEEETTEEEEEE-TTEEEEEETTTCCEEE-EEC----------SSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEE
T ss_pred CCCCCCCEEEEEe-CCcEEEEECCCCCEEE-Eec----------CCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEE
Confidence 488 88887543 4568888998887543 321 2366889999999999986542 22 366666
Q ss_pred cCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEe
Q 000054 2300 LEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAG 2338 (2548)
Q Consensus 2300 l~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG 2338 (2548)
..+++...+..................++|+|+.++...
T Consensus 75 ~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 75 GENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp TTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred ecCCceEEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence 666643322111000000011122335899999888753
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.29 E-value=0.66 Score=53.02 Aligned_cols=210 Identities=9% Similarity=0.011 Sum_probs=124.8
Q ss_pred EEEEcC-CCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 000054 2224 AFSSHP-LRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEV 2302 (2548)
Q Consensus 2224 ~VsfSP-dG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~t 2302 (2548)
+..|++ ++.++.+=-..+.|.-||..+++.. .+.. ...+.++++.++|.++++ +.+ -+.++|..+
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~-----------~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~t 87 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHAL-----------PFMGSALAKISDSKQLIA-SDD-GLFLRDTAT 87 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEEC-----------SSCEEEEEEEETTEEEEE-ETT-EEEEEETTT
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEEC-----------CCCcEEEEEecCCCEEEE-EeC-ccEEeeccc
Confidence 445776 4555556567788999998887643 3321 156889999999876664 455 477899988
Q ss_pred CcccccccCccceeccCCcccEE--EEcCCCCEEEEEecc-CCCCeEEEEECCCCCCCcceeeeccCCCeEEEEEccCCC
Q 000054 2303 GGRSNVRPMESCLCFSSHAMDVS--YITSSGSVIAAAGHS-SNGINVVVWDTLAPPTSSRASITCHEGGARSISVFDNDL 2379 (2548)
Q Consensus 2303 gk~i~i~p~~s~~t~~gH~~~V~--afSpdGslLATgG~S-S~DGtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP~dl 2379 (2548)
++...+.... .......+. .+.++|++.++.... ...+.-.+|.+.. ++..... ..-...+.+.|+++.
T Consensus 88 g~~~~l~~~~----~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~--g~~~~~~-~~~~~~Ng~~~s~d~- 159 (295)
T d2ghsa1 88 GVLTLHAELE----SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAK--GKVTKLF-ADISIPNSICFSPDG- 159 (295)
T ss_dssp CCEEEEECSS----TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEET--TEEEEEE-EEESSEEEEEECTTS-
T ss_pred ceeeEEeeee----cCCCcccceeeEECCCCCEEEEeccccccccceeEeeecC--CcEEEEe-eccCCcceeeecCCC-
Confidence 7533221110 001111222 378899877764310 0122345555543 3322222 223456788999883
Q ss_pred CCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcccCCCCCEEE
Q 000054 2380 GSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIPKAHLGSVTR 2459 (2548)
Q Consensus 2380 g~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~~gH~~~Vts 2459 (2548)
..++++-+..+.|..+++.. ..+... +...++-...+-.+....
T Consensus 160 -----~~l~~~dt~~~~I~~~~~d~-~~~~~~------------------------------~~~~~~~~~~~~~g~pdG 203 (295)
T d2ghsa1 160 -----TTGYFVDTKVNRLMRVPLDA-RTGLPT------------------------------GKAEVFIDSTGIKGGMDG 203 (295)
T ss_dssp -----CEEEEEETTTCEEEEEEBCT-TTCCBS------------------------------SCCEEEEECTTSSSEEEE
T ss_pred -----ceEEEeecccceeeEeeecc-cccccc------------------------------cceEEEeccCcccccccc
Confidence 44667777788888888531 111000 001111112334456788
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2460 ISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2460 LafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
++++.+|.+.++.-..|.|..||- +|+.+..+
T Consensus 204 ~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i 235 (295)
T d2ghsa1 204 SVCDAEGHIWNARWGEGAVDRYDT-DGNHIARY 235 (295)
T ss_dssp EEECTTSCEEEEEETTTEEEEECT-TCCEEEEE
T ss_pred eEEcCCCCEEeeeeCCCceEEecC-CCcEeeEe
Confidence 999999998888778889999994 68888877
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=95.63 E-value=0.78 Score=52.85 Aligned_cols=194 Identities=14% Similarity=0.070 Sum_probs=110.6
Q ss_pred EEEEEcCCCCEEEEEECC----CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC------
Q 000054 2223 RAFSSHPLRPFFLVGSSN----THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD------ 2292 (2548)
Q Consensus 2223 ~~VsfSPdG~~LASGS~D----GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D------ 2292 (2548)
..++++++|+++++...+ +.+...+..++.......... -......+++.++|++.++....
T Consensus 85 ~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------~~~~~nd~~~d~~G~l~vtd~~~~~~~~~ 156 (319)
T d2dg1a1 85 AAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS--------TAYCIDDMVFDSKGGFYFTDFRGYSTNPL 156 (319)
T ss_dssp EEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS--------SCCCEEEEEECTTSCEEEEECCCBTTBCC
T ss_pred eEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCC--------cccCCcceeEEeccceeecccccccccCc
Confidence 678889999988875432 334444444444333332111 12457899999999876664321
Q ss_pred CcEEEEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCCcceee-------ecc
Q 000054 2293 GTVCTWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTSSRASI-------TCH 2365 (2548)
Q Consensus 2293 GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k~v~sl-------~gH 2365 (2548)
+.+..++.+.+. .... ...+ ...+. .+++++++.+..+. +..+.|..||+... +...... ...
T Consensus 157 g~v~~~~~dg~~-~~~~----~~~~-~~pnG-ia~s~dg~~lyvad--~~~~~I~~~d~~~~-g~~~~~~~~~~~~~~~~ 226 (319)
T d2dg1a1 157 GGVYYVSPDFRT-VTPI----IQNI-SVANG-IALSTDEKVLWVTE--TTANRLHRIALEDD-GVTIQPFGATIPYYFTG 226 (319)
T ss_dssp EEEEEECTTSCC-EEEE----EEEE-SSEEE-EEECTTSSEEEEEE--GGGTEEEEEEECTT-SSSEEEEEEEEEEECCS
T ss_pred ceeEEEecccce-eEEE----eecc-ceeee-eeeccccceEEEec--ccCCceEEEEEcCC-CceeccccceeeeccCC
Confidence 223333333221 1100 0000 11111 35899999777665 46889999998642 2221111 111
Q ss_pred CCCeEEEEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCce
Q 000054 2366 EGGARSISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGM 2445 (2548)
Q Consensus 2366 s~~VtSLafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~ 2445 (2548)
......+++.++ |++.++....+.|.++| . .|+.+..+..+..
T Consensus 227 ~~~PdGl~vD~~-------G~l~Va~~~~g~V~~~~---p-~G~~l~~i~~P~~-------------------------- 269 (319)
T d2dg1a1 227 HEGPDSCCIDSD-------DNLYVAMYGQGRVLVFN---K-RGYPIGQILIPGR-------------------------- 269 (319)
T ss_dssp SSEEEEEEEBTT-------CCEEEEEETTTEEEEEC---T-TSCEEEEEECTTG--------------------------
T ss_pred ccceeeeeEcCC-------CCEEEEEcCCCEEEEEC---C-CCcEEEEEeCCCc--------------------------
Confidence 233567888877 78888888899999999 3 4676665521100
Q ss_pred EEEcccCCCCCEEEEEEeCCCCEEEEEeCC
Q 000054 2446 LWYIPKAHLGSVTRISTVPNTSLFLTGSKD 2475 (2548)
Q Consensus 2446 Iwdi~~gH~~~VtsLafSPdG~~LaSGS~D 2475 (2548)
..++...+++++|.|++..+++.+.|
T Consensus 270 ----~~~~~~~~~~~~~~~~~~~~~~t~~~ 295 (319)
T d2dg1a1 270 ----DEGHMLRSTHPQFIPGTNQLIICSND 295 (319)
T ss_dssp ----GGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ----CCCcCceeeeEEEeCCCCEEEEEcCC
Confidence 02455567899999988776665543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.83 E-value=1.5 Score=50.01 Aligned_cols=165 Identities=10% Similarity=0.013 Sum_probs=98.5
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC----CcEEE
Q 000054 2222 TRAFSSHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD----GTVCT 2297 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D----GtVrV 2297 (2548)
+.++++.++|.++++ +.+ .+.++|..+++....... .. ......+.++.+.|+|+..++...+ +.-.+
T Consensus 61 ~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~-~~-----~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l 132 (295)
T d2ghsa1 61 GSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAEL-ES-----DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSI 132 (295)
T ss_dssp EEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECS-ST-----TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEE
T ss_pred cEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeee-ec-----CCCcccceeeEECCCCCEEEEeccccccccceeE
Confidence 456777788876665 454 588999998875443321 11 1112468899999999977665432 34456
Q ss_pred EEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCCCCCC----c--ceeeeccCCCeEE
Q 000054 2298 WQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLAPPTS----S--RASITCHEGGARS 2371 (2548)
Q Consensus 2298 WDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t~~~k----~--v~sl~gHs~~VtS 2371 (2548)
|.+..++..... ..-....-.+++++++.+..+. +..+.|..+++...... . ...+.+..+....
T Consensus 133 ~~~~~g~~~~~~-------~~~~~~Ng~~~s~d~~~l~~~d--t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG 203 (295)
T d2ghsa1 133 YHVAKGKVTKLF-------ADISIPNSICFSPDGTTGYFVD--TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDG 203 (295)
T ss_dssp EEEETTEEEEEE-------EEESSEEEEEECTTSCEEEEEE--TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEE
T ss_pred eeecCCcEEEEe-------eccCCcceeeecCCCceEEEee--cccceeeEeeecccccccccceEEEeccCcccccccc
Confidence 666555321110 0001111235889998777765 57889999987532111 1 1122234456778
Q ss_pred EEEccCCCCCCCCCCEEEEEeCCCcEEEEeCCccccCceeeee
Q 000054 2372 ISVFDNDLGSGSVSPLIVTGGKGGDVGIHDFRYIATGKTKKHK 2414 (2548)
Q Consensus 2372 LafsP~dlg~gs~g~lLVSGS~DGtVrLWDLR~l~TGk~l~tl 2414 (2548)
+++..+ |++.++.-..|.|..|| . .|+.+..+
T Consensus 204 ~~vD~~-------GnlWva~~~~g~V~~~d---p-~G~~~~~i 235 (295)
T d2ghsa1 204 SVCDAE-------GHIWNARWGEGAVDRYD---T-DGNHIARY 235 (295)
T ss_dssp EEECTT-------SCEEEEEETTTEEEEEC---T-TCCEEEEE
T ss_pred eEEcCC-------CCEEeeeeCCCceEEec---C-CCcEeeEe
Confidence 888766 67777776788899998 2 35655554
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=94.09 E-value=0.96 Score=52.28 Aligned_cols=113 Identities=12% Similarity=0.066 Sum_probs=67.1
Q ss_pred CCCCEEEEEECCC-----------eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC-CcEE
Q 000054 2229 PLRPFFLVGSSNT-----------HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD-GTVC 2296 (2548)
Q Consensus 2229 PdG~~LASGS~DG-----------sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D-GtVr 2296 (2548)
.+|+.++.|+.+. .+.+||..+++-......... |.......++.++|+.++.|+.+ ..+.
T Consensus 29 ~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~-------~~~~~~~~~~~~~g~i~v~Gg~~~~~~~ 101 (387)
T d1k3ia3 29 TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK-------HDMFCPGISMDGNGQIVVTGGNDAKKTS 101 (387)
T ss_dssp TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECS-------CCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCC-------cccceeEEEEecCCcEEEeecCCCccee
Confidence 5788888887431 367999988754321111111 11223456788999999988766 5899
Q ss_pred EEEcCCCcccccccCccceeccCCcccEEEEcCCCCEEEEEeccC---CCCeEEEEECCC
Q 000054 2297 TWQLEVGGRSNVRPMESCLCFSSHAMDVSYITSSGSVIAAAGHSS---NGINVVVWDTLA 2353 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t~~gH~~~V~afSpdGslLATgG~SS---~DGtVrIWDl~t 2353 (2548)
+||..+..-...... .......-.+..+||++++.+|... .-..+.+||..+
T Consensus 102 ~yd~~~~~w~~~~~~-----~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~ 156 (387)
T d1k3ia3 102 LYDSSSDSWIPGPDM-----QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS 156 (387)
T ss_dssp EEEGGGTEEEECCCC-----SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred EecCccCcccccccc-----cccccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence 999987643221110 1111112234567999999887310 114688999875
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=92.27 E-value=1.8 Score=46.92 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=39.6
Q ss_pred EEEEEEcCCCCEEEEEE-CCC-----eEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeC
Q 000054 2222 TRAFSSHPLRPFFLVGS-SNT-----HIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAAL 2291 (2548)
Q Consensus 2222 V~~VsfSPdG~~LASGS-~DG-----sVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~ 2291 (2548)
....+|+|||+.||-.. .++ .|.+++..+++.... ....+ .............|+|+|+.++....
T Consensus 43 ~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l-t~~~~---~~~~~~~~~~~~~~spdg~~l~~~~~ 114 (281)
T d1k32a2 43 INNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI-TYFSG---KSTGRRMFTDVAGFDPDGNLIISTDA 114 (281)
T ss_dssp EEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC-CCCCE---EEETTEECSEEEEECTTCCEEEEECT
T ss_pred ccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe-eecCC---CccCccccccccccCCCCCEEEEEEc
Confidence 47788999999998542 222 366777767654332 11110 00011234678899999998887643
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=87.44 E-value=19 Score=40.66 Aligned_cols=118 Identities=9% Similarity=-0.007 Sum_probs=67.0
Q ss_pred EEEEcCCCCEEEEEECC-CeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC------CcEE
Q 000054 2224 AFSSHPLRPFFLVGSSN-THIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD------GTVC 2296 (2548)
Q Consensus 2224 ~VsfSPdG~~LASGS~D-GsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D------GtVr 2296 (2548)
+..+.++|.+++.|+.+ ..+.+||..+..-... ...+. + ..-...+..+||+.++.|+.+ ..+.
T Consensus 80 ~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~-~~~~~---~-----r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~ 150 (387)
T d1k3ia3 80 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPG-PDMQV---A-----RGYQSSATMSDGRVFTIGGSWSGGVFEKNGE 150 (387)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEEC-CCCSS---C-----CSSCEEEECTTSCEEEECCCCCSSSCCCCEE
T ss_pred EEEEecCCcEEEeecCCCcceeEecCccCccccc-ccccc---c-----ccccceeeecCCceeeeccccccccccceee
Confidence 44566999999988655 5899999988764322 11111 1 122356667799999988754 3688
Q ss_pred EEEcCCCcccccccCcccee-cc-------CCcccEEEEcCCCCEEEEEeccCCCCeEEEEECCC
Q 000054 2297 TWQLEVGGRSNVRPMESCLC-FS-------SHAMDVSYITSSGSVIAAAGHSSNGINVVVWDTLA 2353 (2548)
Q Consensus 2297 VWDl~tgk~i~i~p~~s~~t-~~-------gH~~~V~afSpdGslLATgG~SS~DGtVrIWDl~t 2353 (2548)
+||..+..-........... .. ..........++|+.+..++ .++.+.++|...
T Consensus 151 ~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~---~~~~~~~~~~~~ 212 (387)
T d1k3ia3 151 VYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGP---STAMNWYYTSGS 212 (387)
T ss_dssp EEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCS---SSEEEEEECSTT
T ss_pred eecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecC---cCCcEEecCccc
Confidence 99988764211111000000 00 11112223445777777765 556667777654
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=82.22 E-value=53 Score=38.30 Aligned_cols=100 Identities=14% Similarity=0.174 Sum_probs=59.9
Q ss_pred EEEEEEEcCCCCEEEEE-E----CCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCC---
Q 000054 2221 STRAFSSHPLRPFFLVG-S----SNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALD--- 2292 (2548)
Q Consensus 2221 ~V~~VsfSPdG~~LASG-S----~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~D--- 2292 (2548)
.+..++++|+++++|.+ + ....++++|+.+++.+...- .. .....++|.+|+..|+....|
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i--~~---------~~~~~~~W~~D~~~~~Y~~~~~~~ 194 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL--ER---------VKFSCMAWTHDGKGMFYNAYPQQD 194 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE--EE---------ECSCCEEECTTSSEEEEEECCCCS
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc--cc---------ccccceEEcCCCCEEEEEEecccc
Confidence 34567788999999843 2 23469999999998764321 10 122568999999987755433
Q ss_pred -------------CcEEEEEcCCCcccccccCccceeccCCcc--cEE--EEcCCCCEEEEE
Q 000054 2293 -------------GTVCTWQLEVGGRSNVRPMESCLCFSSHAM--DVS--YITSSGSVIAAA 2337 (2548)
Q Consensus 2293 -------------GtVrVWDl~tgk~i~i~p~~s~~t~~gH~~--~V~--afSpdGslLATg 2337 (2548)
..|..+.+.++..... ..+..... .+. ..+.++++++..
T Consensus 195 ~~~~~~~~~~~~~~~v~~h~lgt~~~~d~------~v~~e~d~~~~~~~~~~s~d~~~l~i~ 250 (430)
T d1qfma1 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDI------LCAEFPDEPKWMGGAELSDDGRYVLLS 250 (430)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCE------EEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred CcccccccccCCcceEEEEECCCCccccc------cccccccCCceEEeeeccCCcceeeEE
Confidence 2577777776532211 11222221 222 367888877643
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=82.13 E-value=39 Score=41.43 Aligned_cols=68 Identities=13% Similarity=0.135 Sum_probs=40.3
Q ss_pred CEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEe------CCCcEEEEEcCCCcc
Q 000054 2232 PFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAA------LDGTVCTWQLEVGGR 2305 (2548)
Q Consensus 2232 ~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS------~DGtVrVWDl~tgk~ 2305 (2548)
..++.++.||.+.--|..+|+..-.......+. ...++.--.- .+..++.+. .+|.|+-+|+++|+.
T Consensus 116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~------~~~~t~~p~v-~~~~vivg~~~~~~~~~G~v~a~D~~TG~~ 188 (571)
T d2ad6a1 116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKV------GSTLTQAPFV-AKDTVLMGCSGAELGVRGAVNAFDLKTGEL 188 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCCGGG------TCBCCSCCEE-ETTEEEEECBCGGGTCCCEEEEEETTTCCE
T ss_pred CeEEEEeCCCcEEeeehhhhhhhcccccccccc------ccceeecCeE-eCCeEEEeeccccccccCcEEEEECCCCcE
Confidence 457778889999888999998876664321110 0111100001 133445554 368899999999875
Q ss_pred c
Q 000054 2306 S 2306 (2548)
Q Consensus 2306 i 2306 (2548)
+
T Consensus 189 ~ 189 (571)
T d2ad6a1 189 K 189 (571)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.56 E-value=51 Score=37.60 Aligned_cols=208 Identities=13% Similarity=0.156 Sum_probs=125.7
Q ss_pred EcCCCCEEEEEECCCeEEEEEcCCCceeEEEeccCCCCCCCCCCCCCeEEEEEccCCCEEEEEeCCCcEEEEEcCCCccc
Q 000054 2227 SHPLRPFFLVGSSNTHIYLWEFGKDKATATYGVLPAANVPPPYALASISALQFDHYGHRFASAALDGTVCTWQLEVGGRS 2306 (2548)
Q Consensus 2227 fSPdG~~LASGS~DGsVrLWDl~tg~~l~t~~~l~ghs~~~~~H~~~VtsVaFSPdG~~LaSGS~DGtVrVWDl~tgk~i 2306 (2548)
-||..+.+|.-+ ..+++++|+++.+.++.+.. ...|.--.|-.+.. |+-.. +..|.-|+++... .
T Consensus 70 MhP~~~IiALra-g~~LQiFnletK~klks~~~-----------~e~VvfWkWis~~~-L~lVT-~taVYHW~~~g~s-~ 134 (327)
T d1utca2 70 MNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-----------TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGES-Q 134 (327)
T ss_dssp ECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-----------SSCCCEEEESSSSE-EEEEC-SSEEEEEESSSSC-C
T ss_pred cCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-----------CCCcEEEEecCCCE-EEEEc-CCceEEEcccCCC-C
Confidence 368888887655 45899999999998888753 25676677764443 44333 4579999996432 1
Q ss_pred ccccCccceeccCCc----ccEEE--EcCCCCEEEEEeccCCC----CeEEEEECCCCCCCcceeeeccCCCeEEEEEcc
Q 000054 2307 NVRPMESCLCFSSHA----MDVSY--ITSSGSVIAAAGHSSNG----INVVVWDTLAPPTSSRASITCHEGGARSISVFD 2376 (2548)
Q Consensus 2307 ~i~p~~s~~t~~gH~----~~V~a--fSpdGslLATgG~SS~D----GtVrIWDl~t~~~k~v~sl~gHs~~VtSLafsP 2376 (2548)
+.+.+..|. ..|.. .+++++.++..|-+..+ |.+.+|..+. +.-+.+.||.+....+.+..
T Consensus 135 ------P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er---~~sQ~ieGhaa~F~~~~~~g 205 (327)
T d1utca2 135 ------PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR---KVSQPIEGHAASFAQFKMEG 205 (327)
T ss_dssp ------CEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT---TEEEEECCSEEEEEEECCTT
T ss_pred ------chhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc---CcCccccceeeeeEEEEcCC
Confidence 122344443 34443 67888888776643333 5678898863 45677788877666665432
Q ss_pred CCCCCCCCCCEEEEEe---CCCcEEEEeCCccccCceeeeecCCCCCCCccccccccCCCCCCccCCCCCceEEEcc---
Q 000054 2377 NDLGSGSVSPLIVTGG---KGGDVGIHDFRYIATGKTKKHKHSDRGGSSINTCAHADAQTGSGSKPGDQNGMLWYIP--- 2450 (2548)
Q Consensus 2377 ~dlg~gs~g~lLVSGS---~DGtVrLWDLR~l~TGk~l~tl~~~~~~s~~~~~~vafSpdGk~v~s~D~sv~Iwdi~--- 2450 (2548)
+. ...++++-+. ..+.+.+-++.....+.... .-+..+++
T Consensus 206 ~~----~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f------------------------------~kk~vdi~fpp 251 (327)
T d1utca2 206 NA----EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF------------------------------PKKAVDVFFPP 251 (327)
T ss_dssp CS----SCEEEEEEEEEETTEEEEEEEECSCCCTTCCCC------------------------------CCEEEECCCCT
T ss_pred CC----CCceEEEEEECCCCCcEEEEEEcCCCccCCCCC------------------------------cceeEEEECCc
Confidence 21 0122333332 22466666643211111000 01111221
Q ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcEEEEe
Q 000054 2451 KAHLGSVTRISTVPNTSLFLTGSKDGDVKLWDAKAAQLVYHW 2492 (2548)
Q Consensus 2451 ~gH~~~VtsLafSPdG~~LaSGS~DGtIrIWDl~Tgell~tL 2492 (2548)
..-.+---++..++.-..++.-+.-|.|+++|+.++.++..-
T Consensus 252 ea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~n 293 (327)
T d1utca2 252 EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 293 (327)
T ss_dssp TCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred cccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEe
Confidence 122334457888988889999999999999999999998743
|