Citrus Sinensis ID: 000077

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------1690------1700------1710------1720------1730------1740------1750------1760------1770------1780------1790------1800------1810------1820------1830------1840------1850------1860------1870------1880------1890------1900------1910------1920------1930------1940------1950------1960------1970------1980------1990------2000------2010------2020------2030------2040------2050------2060------2070------2080------2090------2100------2110------2120------2130------2140------2150------2160------2170------2180------2190------2200------2210------2220------2230------2240------2250------2260------2270------2280------2290------2300------2310------2320------2330------2340------2350------2360------2370------2380------2390------2400------241

MLRLSSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADSSTSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSMVSGWVPDNTH

cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccccccccHHHHcccccccccccccHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccHHHHHHccccccccccccccccHHHHHHHHHHHcccccHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHcHHHHHHHHHHHHccccHHHHHHHHHcHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHcccccccccccccHHccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccEEEEEHHHHHHHcccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHcHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccc

cccccHHHHHHHHHHHHHccHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccEEEccccccccccccHHHHHHHccccccccHHHHHHHHcccccHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHccccccccccHHHHHHHHHHHHHHccccccHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHccccHccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHcccEEEEEcHHHHHHHHHccccEcccccHHHHHHHHHHHHHHHcccccEEEEEEEEHHHHHccccHHcccccHHHccccHHHccccccccccccccccccccccccccccccccccccHHHccccccccccHHHHHcccccccccccccccccccHccccccccccccHcccccccccccccccHccccccccEEEEcccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHEHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHcccccccccHHcccccccccccccccccccccccccHHHHcHHcccHHHcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccHcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccHHHHccccccccccHHHHccccHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccHHHccHHHHHHHHHHHHHHcccccccccccccccccccc

mlrlsstvPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLnlhgtglknpqlESVVASVFKYimdkpnfstvfSQSVKITEINEQLLENLSDVLnlslperigiglalsdsenldalmcgkNFCMAQIERlcanpvpmnsaEQIQNIIMFLQRSSDLSKHVDSLMQILSLLqskdhtqfvlnpvlpdelhdatslrdldlfhecrdddFDDILAEMEKEMSMGDVmnelgygcsadasQCKEILSLFTPLTEITLSRILGAIARThaglednqntfSTFTLALgcstmsdlpplsswnVDVLVKAIKQlapntnwiRVVENldyegfyiptEEAFSFFMSVYKYacqepfplhavcgsvwknteGQLSFLRYavasppevftfahsarqlpyvdavpglklqsgqanhAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHvnpnivlrgfvdaqnmepdCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVqfgrsqdfsaqpfhhsgaLLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLdstprlqngeaadsstsegyaDDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGnlfeeyrffpkypeRQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDAlrkpadskmfVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISsghlesdgasnpaahqhvssqatsgngevsgsgiTQLGQQLSSQIQLQqrsesvvddrhkvsaasssdmkpllssigqpssvaplgdtssaqKLHNavsapamlsissgfarpsrgvtstkfgsALNIETLVAAAERretpieapasevQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFtskilepcqsslayqppnpwTMAILGLLAEIysmpnlkmnLKFDIEVLFKNlgvdmkditptsllkdrkreiegnpdfsnkdvgasqpqlvpevkpaivsplghvdlpldvasppnsggpthllsqyaaplrlssgtlmedeKLAALgisdqlpsaqglfqasqsqspfsvsqlstpipnigthvIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSlahvtckeplrgsiSSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRkhregvgssffdpniyaqgsmgvpealrpkpghlsvsqQRVYEdfvrlpwqnqssqgshamsagsltssgdaaqasayglaggqgnqgysssagstgfdavsrpsdvasgttestsagflSTSLVHigaadggilhnsesesvnaaftpAATElyaadstepvkepgassqslpstaaperigssilepslqtrdaLDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYenasnnlhFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLIEIVRnpaananassgattakddkarqskdkkayshttanredynipesvdpdpvgfpeQVSMLFAEWYQicelpgsndaACTRYVLQLHqngllkgddmTDRFFRRLTEVSVAHClssevinpgtlqspqqsqsLSFLAIDIYAKLMLSILKccpveqgsskiFLLSKILTVTVKFILKDAeekkasfnprpyFRLFINWLldmssldpvadgsnfQILSAFANAFHvlqplkvpaFSFAWLELVShrsfmpklligngqkgwPYIQRLLVNLLQFLEPFlrnaelgvpvrfLYKGTLRVLLVLLHdfpeflcdyhftfcdvippsciQMRNIILsafprnmrlpdpstpnlkidllpeirdpprifSEVDAALRAKQMRADVDdylktgqpgssfLSELKQklllppseaasagtrynvplINSLVLYVGMQAIHQLQTRtshaqstgnnsSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAAnqlrypnnhthYFSFVLLYLYAEANQEIIQEQITRVLFERLivnrphpwgLLITFIELiknprynfwnqsfiRCAPEIEKLFESVArscgglkpvddsmvsgwvpdnth

mlrlsstvpsQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKqlapntnwirVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVvldstprlqngeaadsstseGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSaasssdmkpllSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGvtstkfgsalNIETLVAAAERRETPieapasevqdkISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKnlgswlgkltigrnqvlrareidpkSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNlgvdmkditptsllkdrkreiegnpdfsnkdvgASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSgivqrsvsiatqttkelvlKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKepgassqslpstaaperigSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTswviysdeerkfnrdITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLIEIVRNpaananassgattakddkarqskdkkayshttanredynipesVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDaeekkasfnprpYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKidllpeirdppRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGglkpvddsmvsgwvpdnth

MLRLSSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWlcldlldvlcqlSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADSSTSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVsgsgitqlgqqlssqiqlqqRSESVVDDRHKVSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLIEIVRNPaananassgattaKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTlqspqqsqslsFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSMVSGWVPDNTH

***********IRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVL***************************ANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARI***************************************************************************************************************************GSALNIETLVA***************VQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIK******SLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDIT********************************************************************************************************************PIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSL********GSSFFDPNIYA***********************VYEDFVRLPW********************************************************************FLSTSLVHIGAADGGIL***********************************************************DALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLIEIVR**************************************************GFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVIN************LSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRN************IDLL********IF***********************************************GTRYNVPLINSLVLYVGMQAIHQLQT************SLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPV**************

****SSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHG***KNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQ*************QILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECR***************SMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHA***********FTL************LSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPY************QANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVK****************************IPVILKLLKAH***********EIEKFQAVVLDSTPRLQN*****************AEANSYFHQMFSGQLTIEAMVQM**************IFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIE************************************************************************************************************************************LNIETLVAAAE***********EVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKD************************************************************************************************************TPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLR**************QAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSL************FDPNIYAQGSMGV****************RVYEDF*********************************************************************************************************************************************LEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLIE*****************************************************GFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCL******************LSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPS***********IRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPG**********************TRYNVPLINSLVLYVGMQAIH***********************SAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESV************************

********PSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQ***********GYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSG****************************GSGITQLG**********************************LSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGISDQLPSAQGLF**************STPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPWQN*******************AAQASAYGLAGGQ*******************************SAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAATELYAADS********************ERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLIEIVRNPAAN****************************ANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQ************NNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSMVSGWVPDNTH

*LRLSSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQEPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFAVFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQ************LLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADSSTSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARI****************************************************************************************************************************SALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR************************************************************************************************SPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREGVGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQRVYEDFVRLPW************************************************************************************************************************QS**STAAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVVISELHNLVDALAKLIEIVRNP*A*ANASSG******D**************************VDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEV*********QQSQSLSFLAIDIYAKLMLSILKCCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRT**********SLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGL*****************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		2408	2.2.26 [Sep-21-2011]
A0JP85		2388	CCR4-NOT transcription co	yes	no	0.287	0.289	0.448	1e-170
Q6ZQ08		2375	CCR4-NOT transcription co	yes	no	0.298	0.302	0.437	1e-170
A5YKK6		2376	CCR4-NOT transcription co	yes	no	0.299	0.303	0.437	1e-169
A1A5H6		2374	CCR4-NOT transcription co	yes	no	0.301	0.305	0.435	1e-168
P87112		2100	General negative regulato	yes	no	0.269	0.309	0.307	3e-79
P25655		2108	General negative regulato	yes	no	0.275	0.314	0.266	1e-74
Q8Y5X6		365	3-dehydroquinate synthase	yes	no	0.029	0.197	0.370	0.0001

>sp\|A0JP85\|CNOT1_XENTR CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis GN=cnot1 PE=2 SV=1	Back alignment and function desciption

 Score =  600 bits (1546), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 333/742 (44%), Positives = 453/742 (61%), Gaps = 50/742 (6%)

Query: 1684 SRDE-AALAVAQKVFKGLYENASNN------LHFSAHLAILAAIRD-------VCKLVVK 1729
            SRD  AAL + QK  +GL +  S         +   HL +L A++D        C    K
Sbjct: 1664 SRDAIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGSPWCN---K 1720

Query: 1730 ELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQT 1789
            ++T  +I   +E K+N +    LIR+ L+N+ +Y++H+A+ ++ G N  A  FA+ L++ 
Sbjct: 1721 QITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDLHLAQSMENGLNYMAVAFAMQLVKI 1780

Query: 1790 LVTDE---SRVVISELHNLVDALAKLIEIVRNPAANANASSGATTAKDDKARQSKDKKAY 1846
            L+ DE   S V  +E  + ++ L ++     N  +  NA  G     D            
Sbjct: 1781 LLVDERSVSHVTEAEFFHTIETLMRI-----NAHSRGNAPEGLPQLMDVLRSNFDAMMER 1835

Query: 1847 SHTTANREDYN-IPESVD-PDPVGFPEQVSMLFAEW---YQICELPGSNDAACTRYVLQL 1901
            +H   N   ++ I ++ +  DP G  E+   L  EW   Y        +  A + +V Q+
Sbjct: 1836 AHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFSAFVGQM 1895

Query: 1902 HQNGLLKGDDMTDRFFRRLTEVSVA---HCLSSEVINPGTLQSPQQSQSLSFLAIDIYAK 1958
            HQ G+LK DD+  RFFR  TE+ V       + +  NP    +P   ++  +  +D + +
Sbjct: 1896 HQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAA--NPTMIRAKCYHNLDAFVR 1953

Query: 1959 LMLSILK-CCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDM 2017
            L+  ++K         +KI LL+K+L + V  +L+D E +++ F   PY R+FI  LL++
Sbjct: 1954 LIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHEVRQSEFQQLPYHRIFIMLLLEL 2013

Query: 2018 SSLDPVADGSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGN-GQKGW 2076
            ++ + V +  NFQ L+AF N FH+L+P K P F +AWLEL+SHR F+ ++L     QKGW
Sbjct: 2014 NAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQQKGW 2073

Query: 2077 PYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVI 2136
            P   +LL++L ++L PFLRN EL  P++ LYKGTLRVLLVLLHDFPEFLCDYH+ FCDVI
Sbjct: 2074 PMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGFCDVI 2133

Query: 2137 PPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADV 2196
            PP+CIQ+RN+ILSAFPRNMRLPDP TPNLK+D+L EI   PRI +     +   Q + D+
Sbjct: 2134 PPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVM-PPQFKKDL 2192

Query: 2197 DDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTS 2256
            D YLKT  P  +FLSEL+  L +    +   G RYN+ LIN+LVLYVG QAI       +
Sbjct: 2193 DSYLKTRSP-VTFLSELRSNLQV----SNEPGNRYNIQLINALVLYVGTQAI-------A 2240

Query: 2257 HAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVL 2316
            H  + G+  S++    SA +DIFQ L  DLDTEGRYLFLNA ANQLRYPN+HTHYFS  +
Sbjct: 2241 HIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTM 2300

Query: 2317 LYLYAEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPE 2376
            LYL+AEAN E IQEQITRVL ERLIVNRPHPWGLLITFIELIKNP + FWN  F+ CAPE
Sbjct: 2301 LYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHEFVHCAPE 2360

Query: 2377 IEKLFESVARSCGGLKPVDDSM 2398
            IEKLF+SVA+ C G K     M
Sbjct: 2361 IEKLFQSVAQCCMGQKQAQQVM 2382

Belongs to the CCR4-NOT complex that functions as general transcription regulation complex. Acts as a transcriptional repressor. Represses the ligand-dependent transcriptional activation by nuclear receptors.
Xenopus tropicalis (taxid: 8364)

>sp\|Q6ZQ08\|CNOT1_MOUSE CCR4-NOT transcription complex subunit 1 OS=Mus musculus GN=Cnot1 PE=1 SV=2	Back alignment and function description

>sp\|A5YKK6\|CNOT1_HUMAN CCR4-NOT transcription complex subunit 1 OS=Homo sapiens GN=CNOT1 PE=1 SV=2	Back alignment and function description

>sp\|A1A5H6\|CNOT1_DANRE CCR4-NOT transcription complex subunit 1 OS=Danio rerio GN=cnot1 PE=2 SV=1	Back alignment and function description

>sp\|P87112\|NOT1_SCHPO General negative regulator of transcription subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=not1 PE=1 SV=1	Back alignment and function description

>sp\|P25655\|NOT1_YEAST General negative regulator of transcription subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC39 PE=1 SV=3	Back alignment and function description

>sp\|Q8Y5X6\|AROB_LISMO 3-dehydroquinate synthase OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=aroB PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		2408
255541160		2330	ccr4-not transcription complex, putative	0.961	0.993	0.736	0.0
449433000		2427	PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT	0.985	0.978	0.722	0.0
356523091		2424	PREDICTED: CCR4-NOT transcription comple	0.986	0.980	0.731	0.0
356504613		2327	PREDICTED: CCR4-NOT transcription comple	0.953	0.986	0.706	0.0
357512789		2410	CCR4-NOT transcription complex subunit [	0.978	0.977	0.695	0.0
357512787		2418	CCR4-NOT transcription complex subunit [	0.978	0.974	0.693	0.0
297734545		2452	unnamed protein product [Vitis vinifera]	0.984	0.966	0.685	0.0
359489261		2333	PREDICTED: CCR4-NOT transcription comple	0.960	0.990	0.666	0.0
297842912		2379	hypothetical protein ARALYDRAFT_887229 [	0.976	0.988	0.649	0.0
334182230		2377	CCR4-NOT transcription complex subunit 1	0.977	0.989	0.651	0.0

>gi\|255541160\|ref\|XP_002511644.1\| ccr4-not transcription complex, putative [Ricinus communis] gi\|223548824\|gb\|EEF50313.1\| ccr4-not transcription complex, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 3646 bits (9455), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1785/2423 (73%), Positives = 2022/2423 (83%), Gaps = 108/2423 (4%)

Query: 1    MLRLSSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGL 60
            M  LSST+ +Q+RFLL SLNE N DSVFRELC+F E G++ S ++LQTC++H+N   T L
Sbjct: 1    MPTLSSTISNQVRFLLHSLNEDNLDSVFRELCKFTENGLDESIVVLQTCLEHVNFQRTDL 60

Query: 61   KNPQLESVVASVFKYIMDKPNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLA 120
            KN QL+ V+ S+FK+++D+PNFSTV  QS++ +EI+E+ L+N S+VL+LSL E+I IGLA
Sbjct: 61   KNMQLQPVILSIFKFLLDRPNFSTVLCQSLRSSEISEEFLDNFSNVLHLSLSEKIAIGLA 120

Query: 121  LSDSENLDALMCGKNFCMAQIERLCANPVPMNSAEQIQNIIMFLQRSSDLSKHVDSLMQI 180
            LSDSEN++  M  K FC+AQIE LC+NPV MNSA+QIQNI+MFLQ+S   +KHVD  +Q+
Sbjct: 121  LSDSENIETRMGAKKFCIAQIEELCSNPVSMNSAQQIQNIVMFLQQSEGHTKHVDPFLQM 180

Query: 181  LSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKEMSMGDVMN 240
            LSL+Q KD   F L P+L DE+ +A  LR++DLFHEC++++FD +LAEMEKEM+ G+++ 
Sbjct: 181  LSLVQPKDVFPFFLTPLLSDEMREANFLRNMDLFHECQENEFDALLAEMEKEMNAGEIVK 240

Query: 241  ELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCST 300
            ELGYGC+ D+S CKEILS F PLTE T+S+ILG IAR HAGLE+NQ+TFS F LALGCS 
Sbjct: 241  ELGYGCTFDSSHCKEILSNFLPLTESTISKILGTIARNHAGLEENQSTFSNFGLALGCSI 300

Query: 301  MSDLPPLSSWNVDVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKYACQ 360
             +DLPPL SW++D+LVK IKQLAP TNWI+VVEN+DYEGFYIP EEAFSFFMSVY++A Q
Sbjct: 301  STDLPPLGSWDIDILVKTIKQLAPGTNWIKVVENMDYEGFYIPNEEAFSFFMSVYRHASQ 360

Query: 361  EPFPLHAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQAN 420
            + FP+H +CGSVWKN  GQLS L+YAV +PPEVFTFAHS RQL Y DAV G KLQ G AN
Sbjct: 361  DLFPVHVLCGSVWKNALGQLSLLKYAVLAPPEVFTFAHSGRQLVYNDAVHGQKLQVGHAN 420

Query: 421  HAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHINTAYNLIQYEVSFA 480
            HAWL LDLL+VLCQL+E GH+S  RS+LEYPLK CPE+LLLGM+HINTAY L+QYEVSF 
Sbjct: 421  HAWLSLDLLEVLCQLAERGHSSSVRSILEYPLKHCPEILLLGMSHINTAYKLLQYEVSFT 480

Query: 481  VFPMIIKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEM 540
            VFPMIIKST S+GMIL++WH+NPN+V+RGFVDA N+EPDCTI+IL+ICQELKILSSVL+M
Sbjct: 481  VFPMIIKSTTSSGMILYLWHINPNVVVRGFVDAYNIEPDCTIKILDICQELKILSSVLDM 540

Query: 541  IPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEECLKFVKEVQFGRSQDFSAQPF 600
            IP    IRLAV+AS+KEL+DLEKWL+ NL  YKD FFEE               FS++PF
Sbjct: 541  IPYAIGIRLAVLASRKELIDLEKWLTTNLIAYKDFFFEE---------------FSSKPF 585

Query: 601  HHSGALLNLYMEKIPVILKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEAADSS 660
            HH+ +++N+YME   + LK+LKA  GLI S++LS+E+E+    + DS PRLQNG +ADSS
Sbjct: 586  HHASSVVNIYMEASSIFLKVLKAQTGLIISSQLSDEMERLHITITDSNPRLQNGGSADSS 645

Query: 661  TSEGYADDIEAEANSYFHQMFSGQLTIEAMVQMLARFKESSVKREHSIFECMIGNLFEEY 720
            T E ++DD+EAEANSYFHQMFSGQLTIEAMVQMLARFKES V+RE  IFECMIGNLFEEY
Sbjct: 646  TPEPFSDDVEAEANSYFHQMFSGQLTIEAMVQMLARFKESPVRREQLIFECMIGNLFEEY 705

Query: 721  RFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKMFVFGTKALE 780
            RFFPKYPERQL+IAAVLFGS+IKHQLVTHLTLGIALRGVLDALRKP DSKMF+FGTKAL+
Sbjct: 706  RFFPKYPERQLKIAAVLFGSVIKHQLVTHLTLGIALRGVLDALRKPPDSKMFIFGTKALD 765

Query: 781  QFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVS 840
            QFVDRLIEWPQYCNHILQISHLR+TH+E+V+FIER LARISSGHLESDG +  A+H H  
Sbjct: 766  QFVDRLIEWPQYCNHILQISHLRTTHSEIVSFIERQLARISSGHLESDGNNGSASHHHGL 825

Query: 841  SQATSGNGEVSGSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQP 900
            SQA+SGNGE+    I Q  QQLSS + +QQR ES +D+RHKV  ASS+D K +LSS GQ 
Sbjct: 826  SQASSGNGELISVNIPQSVQQLSSTLNVQQRHESPLDERHKVFLASSNDTKSVLSSGGQ- 884

Query: 901  SSVAPLGDTSSAQKLHNAVSAPAMLSISSGFARPSRGVTSTKFGSALNIETLVAAAERRE 960
            SSVAPL D S AQK  +A  A AMLS S GF RPSRGVTSTKFGSALNI TL AAAERRE
Sbjct: 885  SSVAPLSDNSIAQK--SAAGATAMLSSSHGFIRPSRGVTSTKFGSALNIGTLEAAAERRE 942

Query: 961  TPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNF 1020
            TPIEAPASE+QDKISFIINNISA N+EAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNF
Sbjct: 943  TPIEAPASEIQDKISFIINNISAANIEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNF 1002

Query: 1021 HDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIG 1080
            HDLYLKFLDKV+SKALN+EIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIG
Sbjct: 1003 HDLYLKFLDKVSSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIG 1062

Query: 1081 RNQVLRAREIDPKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLA 1140
            RN VLR REIDPKSLIIEAYEKGLMIAVIPFTSK                          
Sbjct: 1063 RNHVLRGREIDPKSLIIEAYEKGLMIAVIPFTSK-------------------------- 1096

Query: 1141 EIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKREIEGNPDFSNKDVGASQPQ 1200
                             VLFKNLGVDMKDI PTSLLKDRKRE+EGNPDFSNKDVG SQPQ
Sbjct: 1097 -----------------VLFKNLGVDMKDIAPTSLLKDRKREMEGNPDFSNKDVGVSQPQ 1139

Query: 1201 LVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGTLMEDEKLAALGI 1260
            +VPEVKP I+SPL HVDLPL+VA+PPN+ G THLL QYAAP+ LS GTL EDEKLAALG+
Sbjct: 1140 IVPEVKPGIISPLNHVDLPLEVANPPNAVGHTHLLPQYAAPVNLSVGTLTEDEKLAALGM 1199

Query: 1261 SDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMD 1320
            SDQLP  QGLFQA+ +QSPFSVSQL T +PN GT VIINQK  + GLHLHFQR+VP+ MD
Sbjct: 1200 SDQLPPGQGLFQATPNQSPFSVSQLPTALPNFGTLVIINQKFNSWGLHLHFQRLVPLVMD 1259

Query: 1321 RAIKEIVSGIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCK 1380
            RA+KEIVS IVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCK
Sbjct: 1260 RAVKEIVSSIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCK 1319

Query: 1381 EPLRGSISSQLRNSLQGLTIASELLEQAVQLVTNDNLDLGCAVIEQAATDKAIQTIDGEI 1440
            EPLR SIS+QLRNSLQGL   S+LLE AVQL TNDNLDLGCA IEQAATDKAIQTID EI
Sbjct: 1320 EPLRNSISTQLRNSLQGLNSTSDLLEHAVQLATNDNLDLGCAAIEQAATDKAIQTIDAEI 1379

Query: 1441 AQQLSLRRKHREGVGSSFFDPNIYAQGSMGV-PEALRPKPGHLSVSQQRVYEDFVRLPWQ 1499
            AQQLSLRRKHR+GVG +FFD N+Y+QGSMGV PEALRPKPGHLSVSQQRVYEDFVRLPWQ
Sbjct: 1380 AQQLSLRRKHRDGVGPTFFDANLYSQGSMGVVPEALRPKPGHLSVSQQRVYEDFVRLPWQ 1439

Query: 1500 NQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGT 1559
            NQS QGSH +  GS TS+   A A AYG   GQ N GYSS+ G+ GF+AVSR  D+ S  
Sbjct: 1440 NQSGQGSHTIPMGSSTSAVSTALAGAYGSGSGQLNPGYSSAPGNVGFEAVSRTLDMGSDA 1499

Query: 1560 TESTSAGFLSTSLVHIGAADGGILHNSESESVNAAFTPAA-TELYAADSTEPVKEPGASS 1618
            TES SA  LS+S +HIGA DG I  NSE+ + + +F+ AA    ++ D+++ VKE G SS
Sbjct: 1500 TESNSAAILSSSSIHIGATDGAIQPNSENSATSVSFSSAAPASEHSGDTSDTVKELGISS 1559

Query: 1619 QSLPSTAAPERIGSSILEPSLQTRDALDKYHIVAQKLDALIGNDAREAEVQGVISEVPEI 1678
            Q + S+AA +R+ +S  EP+L TRDALDKY IVAQKL+AL+ +D RE E+QG+I+EVPEI
Sbjct: 1560 QPISSSAASDRLVTSASEPTLNTRDALDKYQIVAQKLEALVSSDGREVEIQGLITEVPEI 1619

Query: 1679 ILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKLVVKELTSWVIYS 1738
            ILRC+SRDEAALAVAQKVFKGLYENASNN H +A LAILAAIRDVCKLVVKELTSWVIYS
Sbjct: 1620 ILRCVSRDEAALAVAQKVFKGLYENASNNFHVNACLAILAAIRDVCKLVVKELTSWVIYS 1679

Query: 1739 DEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVV 1798
            DEERKFN+DIT+GLIRSELLNLAEYNVHMAKLIDGGRNK ATEF+ISL+Q LV +ES+V 
Sbjct: 1680 DEERKFNKDITVGLIRSELLNLAEYNVHMAKLIDGGRNKGATEFSISLIQALVVEESKV- 1738

Query: 1799 ISELHNLVDALAKL-------------IEIVRNPAANANASSGATTAKDDKARQSKDKKA 1845
            ISELHNLVDALAKL             IEIVRNP AN+   SG T  K+DK+RQS+DKK 
Sbjct: 1739 ISELHNLVDALAKLAAKPGSSESLQQLIEIVRNPVANSAVISGFTVGKEDKSRQSRDKK- 1797

Query: 1846 YSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICELPGSNDAACTRYVLQLHQNG 1905
                                       VS+LFAEW++IC+LPG+NDAA T Y+LQLHQNG
Sbjct: 1798 ---------------------------VSLLFAEWFRICDLPGANDAASTHYILQLHQNG 1830

Query: 1906 LLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILK 1965
            LLKGDDMTDRFFR +TE+SVAHCLSSEVIN G LQSPQQ Q+LSFLAIDIYAKL+ SILK
Sbjct: 1831 LLKGDDMTDRFFRIITELSVAHCLSSEVINSGALQSPQQGQNLSFLAIDIYAKLVFSILK 1890

Query: 1966 CCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVAD 2025
               VEQGS++ FLLSKIL VTV+FI KD+EEKK SFNPRPYFRLF+NWLLD+ S DP+ D
Sbjct: 1891 ---VEQGSNRFFLLSKILAVTVRFIQKDSEEKKLSFNPRPYFRLFVNWLLDLVSPDPIID 1947

Query: 2026 GSNFQILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVN 2085
            G+N QIL+AFANAFH LQPLKVPAFSFAWLELVSHRSFMPKLL GN QKGWPY+QRLLV+
Sbjct: 1948 GTNLQILTAFANAFHNLQPLKVPAFSFAWLELVSHRSFMPKLLTGNAQKGWPYVQRLLVD 2007

Query: 2086 LLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRN 2145
            L QFLEPFLR+AELG+PV FLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRN
Sbjct: 2008 LFQFLEPFLRSAELGMPVHFLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRN 2067

Query: 2146 IILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQP 2205
            IILSAFPRNMRLPDPSTPNLKIDLLPEIR+ P I SEVDAAL+AKQM+ADVD+YLKT   
Sbjct: 2068 IILSAFPRNMRLPDPSTPNLKIDLLPEIREAPHILSEVDAALKAKQMKADVDEYLKTRHQ 2127

Query: 2206 GSSFLSELKQKLLLPPSEAASAGTRYNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNS 2265
            GSSFLSELKQ+LLL PSEAASAGTRYNVPLINSLVLY GMQAI QLQ R  H+QS+GN +
Sbjct: 2128 GSSFLSELKQRLLLSPSEAASAGTRYNVPLINSLVLYAGMQAIQQLQARAPHSQSSGNTA 2187

Query: 2266 SLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQ 2325
             L   LV AALDI+QTLI +LDTEGRYLFLNA ANQLRYPNNHTHYFSFVLLYL+AE+NQ
Sbjct: 2188 PLAVLLVDAALDIYQTLIVELDTEGRYLFLNAVANQLRYPNNHTHYFSFVLLYLFAESNQ 2247

Query: 2326 EIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVA 2385
            EIIQEQITRVL ERLIVNRPHPWGLLITFIELIKNPRYNFWN+SFIRCAPEIEKLFESVA
Sbjct: 2248 EIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVA 2307

Query: 2386 RSCGGLKPVDDSMVSGWVPDNTH 2408
            RSCGGLKP+D+SMVSGWV + TH
Sbjct: 2308 RSCGGLKPMDESMVSGWVSEGTH 2330

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449433000\|ref\|XP_004134286.1\| PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356523091\|ref\|XP_003530175.1\| PREDICTED: CCR4-NOT transcription complex subunit 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|356504613\|ref\|XP_003521090.1\| PREDICTED: CCR4-NOT transcription complex subunit 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|357512789\|ref\|XP_003626683.1\| CCR4-NOT transcription complex subunit [Medicago truncatula] gi\|355520705\|gb\|AET01159.1\| CCR4-NOT transcription complex subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|357512787\|ref\|XP_003626682.1\| CCR4-NOT transcription complex subunit [Medicago truncatula] gi\|355520704\|gb\|AET01158.1\| CCR4-NOT transcription complex subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297734545\|emb\|CBI16596.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359489261\|ref\|XP_003633901.1\| PREDICTED: CCR4-NOT transcription complex subunit 1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297842912\|ref\|XP_002889337.1\| hypothetical protein ARALYDRAFT_887229 [Arabidopsis lyrata subsp. lyrata] gi\|297335179\|gb\|EFH65596.1\| hypothetical protein ARALYDRAFT_887229 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|334182230\|ref\|NP_001184889.1\| CCR4-NOT transcription complex subunit 1 [Arabidopsis thaliana] gi\|332189257\|gb\|AEE27378.1\| CCR4-NOT transcription complex subunit 1 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		2408
ZFIN\|ZDB-GENE-040915-1		2375	cnot1 "CCR4-NOT transcription	0.301	0.306	0.436	0.0
UNIPROTKB\|F1MHU9		2371	CNOT1 "Uncharacterized protein	0.301	0.306	0.433	0.0
UNIPROTKB\|A5YKK6		2376	CNOT1 "CCR4-NOT transcription	0.301	0.305	0.433	0.0
MGI\|MGI:2442402		2375	Cnot1 "CCR4-NOT transcription	0.301	0.305	0.436	0.0
UNIPROTKB\|F1RFU3		2375	CNOT1 "Uncharacterized protein	0.303	0.307	0.433	0.0
UNIPROTKB\|G3V7M0		2376	Cnot1 "RCG39079" [Rattus norve	0.301	0.305	0.435	0.0
UNIPROTKB\|E1BXD4		2129	LOC100858397 "Uncharacterized	0.301	0.341	0.432	8.9e-311
DICTYBASE\|DDB_G0276029		2526	DDB_G0276029 "putative CCR4-NO	0.166	0.158	0.585	4.3e-303
FB\|FBgn0085436		2505	Not1 "Not1" [Drosophila melano	0.324	0.312	0.395	3.6e-269
WB\|WBGene00002845		2641	let-711 [Caenorhabditis elegan	0.266	0.243	0.373	9.6e-196

ZFIN\|ZDB-GENE-040915-1 cnot1 "CCR4-NOT transcription complex, subunit 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

 Score = 1480 (526.0 bits), Expect = 0., Sum P(5) = 0.
 Identities = 335/768 (43%), Positives = 463/768 (60%)

Query:  1653 QKLDALIGNDAREAEVQGVISEVPEIILRCISRDE-AALAVAQKVFKGLYENASN---NL 1708
             Q L A+    A   + Q + S +  +++   SRD  AAL + QK  +GL +  S     L
Sbjct:  1621 QHLHAIPPALAMNPQTQAIRSLLEAVVMARNSRDGIAALGLLQKAVEGLLDATSGADPEL 1680

Query:  1709 HFS---AHLAILAAIRDVC----KLVVKELTSWVIYSDEERKFNRDITMGLIRSELLNLA 1761
               S    HL +L A++D      +   K++T  +I   +E K+N +    LIR+ L+N+ 
Sbjct:  1681 LLSYRECHLLVLKALQDGRAYGPQWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQ 1740

Query:  1762 EYNVHMAKLIDGGRNKAATEFAISLLQTLVTDESRVV-ISELHNLVDALAKLIEIVRNPX 1820
             +Y++H+A+ ++ G N  A  FA+ L++ L+ DE  V  I+E     D    +  ++R   
Sbjct:  1741 QYDLHLAQSMENGLNYMAVAFAMQLVKLLLVDERSVSHITE----ADLFHTIETLMRTSA 1796

Query:  1821 XXXXXXXXXXXXKDDKARQSKDKKAYSHTTA-NREDYN-IPESVD-PDPVGFPEQVSMLF 1877
                           D  R + +     H    N   ++ I ++ +  DP G  E+   L 
Sbjct:  1797 HSRANAPEGLPQLMDVVRSNYEAMIDRHHGGPNFMMHSGISQASEYDDPPGLREKAEYLL 1856

Query:  1878 AEW---YQICELPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTE--VSVAHCLSSE 1932
              EW   Y        +  A + +V Q+HQ G+LK DD+  RFFR  TE  V +++   +E
Sbjct:  1857 REWVNLYHSAAAGRDSTKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAE 1916

Query:  1933 VINPGTXXXXXXXXXXXFLAIDIYAKLMLSILKCCPVEQGS-SKIFLLSKILTVTVKFIL 1991
               +P T           +  +D + +L+  ++K       + +KI LL+K+L + V  ++
Sbjct:  1917 QQHPTTSPAIIRAKC--YHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLI 1974

Query:  1992 KDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPLKVPAFS 2051
             +D + ++  F   PY R+FI  LL++++ + V +  NFQ L+AF N FH+L+P K P F 
Sbjct:  1975 QDHDVRQTEFQQLPYHRIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFV 2034

Query:  2052 FAWLELVSHRSFMPKLLIGNGQ-KGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGT 2110
             +AWLEL+SHR F+ ++L    Q KGWP   +LL++L ++L PFLRN EL  P++ LYKGT
Sbjct:  2035 YAWLELISHRIFIARMLAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELNKPMQILYKGT 2094

Query:  2111 LRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLL 2170
             LRVLLVLLHDFPEFLCDYH+ FCDVIPP+CIQ+RN+ILSAFPRNMRLPDP TPNLK+D+L
Sbjct:  2095 LRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDML 2154

Query:  2171 PEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAASAGTR 2230
              EI   PRI +     + + Q + D+D YLKT  P  +FLSEL+  L +    +   G R
Sbjct:  2155 SEINIAPRILTNFTGVMPS-QFKKDLDSYLKTRSP-VTFLSELRSNLQV----SNEPGNR 2208

Query:  2231 YNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEG 2290
             YN+ LIN+LVLYVG QAI       +H  + G+  S++    SA +DIFQ L  DLDTEG
Sbjct:  2209 YNIQLINALVLYVGTQAI-------AHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEG 2261

Query:  2291 RYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEANQEIIQEQITRVLFERLIVNRPHPWGL 2350
             RYLFLNA ANQLRYPN+HTHYFS  +LYL+AEAN E IQEQITRVL ERLIVNRPHPWGL
Sbjct:  2262 RYLFLNAIANQLRYPNSHTHYFSCTMLYLFAEANAEAIQEQITRVLLERLIVNRPHPWGL 2321

Query:  2351 LITFIELIKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVDDSM 2398
             LITFIELIKNP + FW+  F+ CAPEIEKLF+SVA+ C G K     M
Sbjct:  2322 LITFIELIKNPAFKFWSHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVM 2369

GO:0005575 "cellular_component" evidence=ND

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB\|F1MHU9 CNOT1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|A5YKK6 CNOT1 "CCR4-NOT transcription complex subunit 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:2442402 Cnot1 "CCR4-NOT transcription complex, subunit 1" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1RFU3 CNOT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|G3V7M0 Cnot1 "RCG39079" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BXD4 LOC100858397 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0276029 DDB_G0276029 "putative CCR4-NOT complex subunit 1" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

FB\|FBgn0085436 Not1 "Not1" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

WB\|WBGene00002845 let-711 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		2408
pfam04054		375	pfam04054, Not1, CCR4-Not complex component, Not1	1e-180
COG5103		2005	COG5103, CDC39, Cell division control protein, neg	4e-88
pfam12842		147	pfam12842, DUF3819, Domain of unknown function (DU	1e-63
COG5103		2005	COG5103, CDC39, Cell division control protein, neg	3e-46
COG5103		2005	COG5103, CDC39, Cell division control protein, neg	6e-46
COG5103		2005	COG5103, CDC39, Cell division control protein, neg	2e-34

>gnl\|CDD\|217865 pfam04054, Not1, CCR4-Not complex component, Not1	Back alignment and domain information

 Score =  553 bits (1428), Expect = e-180
 Identities = 201/385 (52%), Positives = 258/385 (67%), Gaps = 19/385 (4%)

Query: 2012 NWLLDMSSLDPVADGSNF-QILSAFANAFHVLQPLKVPAFSFAWLELVSHRSFMPKLLIG 2070
            + L +++ LD +       Q   AFA   H LQP+K P F FAWLEL+SHR F+P++L  
Sbjct: 1    SLLYELNRLDSLESKELDSQFYLAFAEYLHSLQPIKYPGFVFAWLELISHRMFLPRMLRL 60

Query: 2071 NGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFLCDYHF 2130
              QKGWP   +LL++LL+FL+ FL+NA L   V+ LYKGTLR+LLVLLHDFPEFL +YH+
Sbjct: 61   PNQKGWPLYVKLLIDLLKFLDEFLKNANLSDAVKVLYKGTLRILLVLLHDFPEFLIEYHY 120

Query: 2131 TFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAK 2190
              CD IPP+CIQ+RN+ILSAFP+NM+LPDP TP LK+D LPEI++ P+I  +  A L++ 
Sbjct: 121  QLCDAIPPNCIQLRNLILSAFPKNMKLPDPFTPGLKVDRLPEIKEAPKILYDPVADLQSA 180

Query: 2191 QMRADVDDYLKTGQPGSSFLSELKQKLLLPPSEAAS----AGTRYNVPLINSLVLYVGMQ 2246
             ++  VD+YL+   P  S L  +   L L   E          + NV LIN+LVL+VG+Q
Sbjct: 181  GLKKPVDNYLRIR-PSESLLRTICNGLYLSEDEQTVGIGYDPVKVNVKLINALVLHVGIQ 239

Query: 2247 AIHQLQTRTSHAQSTGNNSSLTAFLVSAALDIFQTLIQDLDTEGRYLFLNAAANQLRYPN 2306
            A+               N++      S  + +   L  +LD EGRY  LNA ANQLRYPN
Sbjct: 240  AV-------LEILKKSQNANF--NTKSPHMALLSNLANELDPEGRYYLLNAIANQLRYPN 290

Query: 2307 NHTHYFSFVLLYLY----AEANQEIIQEQITRVLFERLIVNRPHPWGLLITFIELIKNPR 2362
            +HTHYFS V+L+L+     E+ +E IQEQITRVL ERLIVN+PHPWGLLITFIELIKNP 
Sbjct: 291  SHTHYFSCVILHLFGSDEWESQKEDIQEQITRVLLERLIVNKPHPWGLLITFIELIKNPD 350

Query: 2363 YNFWNQSFIRCAPEIEKLFESVARS 2387
            Y FW   FI+ APEIEKLF+S+ARS
Sbjct: 351  YKFWELPFIKSAPEIEKLFDSLARS 375

The Ccr4-Not complex is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID. Length = 375

>gnl\|CDD\|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

>gnl\|CDD\|221802 pfam12842, DUF3819, Domain of unknown function (DUF3819)	Back alignment and domain information

>gnl\|CDD\|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

>gnl\|CDD\|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

>gnl\|CDD\|227434 COG5103, CDC39, Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		2408
COG5103		2005	CDC39 Cell division control protein, negative regu	100.0
KOG1831		1591	consensus Negative regulator of transcription [Tra	100.0
PF04054		379	Not1: CCR4-Not complex component, Not1; InterPro:	100.0
PF12842		147	DUF3819: Domain of unknown function (DUF3819); Int	100.0
smart00543		200	MIF4G Middle domain of eukaryotic initiation facto	91.78
KOG1831		1591	consensus Negative regulator of transcription [Tra	90.46
KOG1467		556	consensus Translation initiation factor 2B, delta	81.23
PF02854		209	MIF4G: MIF4G domain; InterPro: IPR003890 This entr	81.19

>COG5103 CDC39 Cell division control protein, negative regulator of transcription [Cell division and chromosome partitioning / Transcription]	Back alignment and domain information

Probab=100.00  E-value=2.3e-295  Score=2689.16  Aligned_cols=1919  Identities=27%  Similarity=0.407  Sum_probs=1491.8

Q ss_pred             CCcHHHHHHHHHhhhhhchHHHHHHHHHHHh-hccchhhHHHhhhhccc--ccCCCCCCCch---HHHHHHHHHHHhhcC
Q 000077            6 STVPSQIRFLLQSLNEANADSVFRELCQFIE-YGIEGSTMMLQTCMDHL--NLHGTGLKNPQ---LESVVASVFKYIMDK   79 (2408)
Q Consensus         6 ~~~~~qi~~l~~~~~~~n~~~~~~el~~~~~-~g~~~~~~~l~~~~~~~--~~~~~~~k~~~---~~~ll~~~~~~ll~k   79 (2408)
                      +.+-+||.+|++.|++.||++.-+||.|+++ ..++--+|++|.++-.-  +.-+ .+|...   --.+|-+|++.++.|
T Consensus        25 sIV~AQI~fLlsTL~eDqydt~~eqIRqlinkna~~vY~~~~rRLiq~nS~~If~-tGK~~~~~a~~~~LL~Elks~~~K  103 (2005)
T COG5103          25 SIVKAQILFLLSTLREDQYDTKLEQIRQLINKNAPRVYHHFLRRLIQGNSYRIFG-TGKSSDGLATYKLLLDELKSLTKK  103 (2005)
T ss_pred             HHHHHHHHHHHHHhhccchhHHHHHHHHHHccCCcHHHHHHHHHHhcccchhhhc-cCcccchhHHHHHHHHHHHhhhhh
Confidence            4677999999999999999999999999997 89999999999999533  3222 244333   457888999999987


Q ss_pred             CCccchhhhhccCcccCHHHHHHHHhhcCCCchhHHHHhhhhccCCChHHHHHHHHHHHHHHHHHhcC----CCC--CCC
Q 000077           80 PNFSTVFSQSVKITEINEQLLENLSDVLNLSLPERIGIGLALSDSENLDALMCGKNFCMAQIERLCAN----PVP--MNS  153 (2408)
Q Consensus        80 p~f~t~~c~A~~~~~~~~~~l~~l~~~L~ls~~q~v~~~laL~~s~n~~~~~~~~~f~~~~i~~l~~~----~~~--~~s  153 (2408)
                      -.     ..|+.+..  ++-|+++    ++    |..+||.++             .++...-.+. |    |++  +..
T Consensus       104 r~-----sD~Is~~d--sevFed~----~F----Q~siGlT~S-------------Ll~n~Fqs~~-Nq~~~~t~qqS~d  154 (2005)
T COG5103         104 RF-----SDAISGSD--SEVFEDF----HF----QFSIGLTTS-------------LLKNTFQSLL-NQLSDPTQQQSID  154 (2005)
T ss_pred             hh-----hhHhhcch--hhhhcch----hh----hhhhhhhHH-------------HHHHHHHHHH-hhccchHhhhhcc
Confidence            54     66776641  2223333    11    111444443             2222222221 1    111  110


Q ss_pred             HHHHHHHHHHHhhcCchhH-hHHHHHHHHHhhcCCCCCCccccCCcCCcccccccccccccccCCCCcchHHHHHHhhcc
Q 000077          154 AEQIQNIIMFLQRSSDLSK-HVDSLMQILSLLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDDDFDDILAEMEKE  232 (2408)
Q Consensus       154 ~~~lh~il~~l~~~~gl~~-~~~~f~~~l~~~~~~~~~~~~l~Pll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (2408)
                      -+-+    -.|++  |-.. ...-|.+.+.-.--+.      .|+             .. +.+.++.+- +.       
T Consensus       155 ~NDl----d~lr~--~~Tdydr~~f~q~i~~~Le~s------~~~-------------~~-~~~p~e~~~-~~-------  200 (2005)
T COG5103         155 KNDL----DLLRE--GTTDYDRKIFRQEIKDVLEKS------DPL-------------TA-LFGPREVDR-SF-------  200 (2005)
T ss_pred             cchH----HHHhc--CCchHHHHHHHHHhHHHHHcC------Cch-------------hh-hcCcchhhH-HH-------
Confidence            0000    00111  2110 0011222111110000      001             00 001011000 01       


Q ss_pred             CcHHHHHHhhCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccCCccCccchhhHhhhccCCCCCCCCCCCCCCH
Q 000077          233 MSMGDVMNELGYGCSADASQCKEILSLFTPLTEITLSRILGAIARTHAGLEDNQNTFSTFTLALGCSTMSDLPPLSSWNV  312 (2408)
Q Consensus       233 ~sl~~~i~elG~~~t~s~~~c~~~L~~~~~l~e~~va~vlg~ma~t~sgl~d~~~~~~~~~~~~g~~~~~~~~~~~~Wn~  312 (2408)
                        |++.              ..++|+-.+.-++.|||+.+-.|+.-                          ++.+.||.
T Consensus       201 --l~~~--------------l~~Il~P~~~~~~~dvar~il~~~~~--------------------------~D~~~w~~  238 (2005)
T COG5103         201 --LDDA--------------LQRILRPRREVVPEDVARAILFMADF--------------------------PDRGEWNL  238 (2005)
T ss_pred             --HHHH--------------HHHHhCCCccCCcchHHHHHhhhhhc--------------------------ccccccch
Confidence              1111              23444433458889999984444422                          22567999


Q ss_pred             HHHHHHHHhhCCCCCHHHHHHhcCCCCCCCCChhhHHHHHHHHhh-hcCCCccccccccCcccCchh-hHHHHHHHhhCC
Q 000077          313 DVLVKAIKQLAPNTNWIRVVENLDYEGFYIPTEEAFSFFMSVYKY-ACQEPFPLHAVCGSVWKNTEG-QLSFLRYAVASP  390 (2408)
Q Consensus       313 ~v~v~alk~~~p~lnW~~Vi~~lD~~~f~i~d~~~l~ll~~~~~~-~~~~~Fpi~~l~~~~W~N~~~-Qlsfl~~~l~~p  390 (2408)
                      -..+.+++..+..+||.+|+.+||.+.|.|+.......++.+|-. +.+.+||.+.+| ..|||... |+++.-|..+.+
T Consensus       239 v~~~~a~~s~~e~iNW~~v~s~f~~~~F~i~~l~p~~v~~~c~f~~~~~~~v~~eff~-~~Wkn~~~~~l~i~lhi~s~~  317 (2005)
T COG5103         239 VAIVGAMKSNLEEINWRDVYSCFLDVNFSIWTLEPLYVIIDCWFYISGIITVPYEFFF-KRWKNERAQILFIRLHIESDE  317 (2005)
T ss_pred             HHHHHHHHhhhhhcCHHHHHHHhcCcceeeccCcchHHHHHHHHHHhcCCCccHHHHH-HHhcchhhhhHhhheeeeecc
Confidence            999999999999999999999999999999977766666665555 456789999999 49999999 566666677777


Q ss_pred             CcccccCc-CccccccccCCCCccccc-cccccccchHHHHHHHHHhhhcCchHHHHHHhhhhhhcChhHHHHHhhcc--
Q 000077          391 PEVFTFAH-SARQLPYVDAVPGLKLQS-GQANHAWLCLDLLDVLCQLSEMGHASFARSMLEYPLKQCPEMLLLGMAHI--  466 (2408)
Q Consensus       391 ~~~f~f~~-~~r~~v~~d~~~~~~~~~-~~~~~~W~sldlie~L~~Lae~~~~~~v~~l~e~p~~~~pe~lllgl~~i--  466 (2408)
                      ...|+... .+.+.|..+...+.+... -...+++||.+|++++. +++.....-..++|   ....||++.+||..+  
T Consensus       318 ~~~fd~~Nv~~tr~Vs~~~~~~~~~~ny~~~~snlNc~el~Q~~~-l~~~p~i~y~~~lF---lN~~pE~~~a~L~~~~~  393 (2005)
T COG5103         318 KRTFDYSNVFFTRIVSIEDSRGHRFKNYMGYESNLNCVELFQCIM-LGSLPLIEYIARLF---LNKSPEWCAAGLGFVQP  393 (2005)
T ss_pred             cchheecccceeEEEeeecCchHHHHHHHHHhcccCHHHHHHHHH-hccchHHHHHHHHH---hccCHHHHHHHHHHhhh
Confidence            77788754 344555544433332222 24789999999999994 44332222233466   789999999999754  


Q ss_pred             ---CcchhHHHHHHHHhhhHHHHcC-CCchHHHHHHHhhCChhHHHHHHHhhhcCCccHHHHHHHHHHhhhHHHHhhcCC
Q 000077          467 ---NTAYNLIQYEVSFAVFPMIIKS-TMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCTIRILEICQELKILSSVLEMIP  542 (2408)
Q Consensus       467 ---~~~~~~l~~ell~~lf~~fl~~-~~~~~vi~~lW~~~~~~v~~~l~d~y~~d~~~l~rIldvaqelk~L~~ll~~~p  542 (2408)
                         +-.||+.+.+.+...+-+++.| .++++|+..+...+|+++++...-...+|...++|++|+.-|+|.|+.+.|..|
T Consensus       394 ~f~~L~~N~v~~s~if~~ll~~f~n~~p~sFvfv~~~rT~p~~~~~~~r~v~~kd~~pv~~~l~~~le~~~l~~V~n~lP  473 (2005)
T COG5103         394 KFSPLAWNPVQESRIFEELLMGFANGAPNSFVFVVLFRTHPEMMLQKSRLVLAKDGIPVSRLLDIFLEHKMLPLVSNLLP  473 (2005)
T ss_pred             hhhhhhcCchHHHHHHHHHHHHHhcCCCCceEEEEEEecCHHHHHHHHHHHHhcCCCcHHHHHHHHHhcCchhhhhhcCC
Confidence               4479999999888877777755 588999999999999999999987789999999999999999999999999999


Q ss_pred             chhHHHHHHHhhcccccCHHHHHHHHhhcCcc-h----HHHHHHHHHHHHhhcccccccCCCCCCCcccccccchhHHHH
Q 000077          543 SPFAIRLAVIASQKELVDLEKWLSINLSTYKD-V----FFEECLKFVKEVQFGRSQDFSAQPFHHSGALLNLYMEKIPVI  617 (2408)
Q Consensus       543 ~~f~idLA~lAsrre~l~lekWl~~~l~~~~~-~----f~~a~l~FL~~k~~~~~~~~~~~~~~~~~~~~~L~~~tv~~l  617 (2408)
                      ..|++|+++|++.|+.++|..|+..++....+ +    |+...++||+.|+.......+.   ...+-+  ++..|+-.+
T Consensus       474 ~~f~~~i~vL~~aR~~l~~~~Wl~~~~~~~~dad~~NVfvv~~~~~l~sk~s~~k~p~~q---~ee~~~--f~~~tviei  548 (2005)
T COG5103         474 PEFCFDIIVLSSARDHLNLGIWLSNNLTTRKDADGLNVFVVSLVQYLDSKVSKHKEPEKQ---KEESVM--FPLNTVIEI  548 (2005)
T ss_pred             HHHHHHHHHHHHHHHhcchhhhcccCceeeecCCcccchHHHHHHHHHHHHhhcCChhhh---ccccee--eehhhHHHH
Confidence            99999999999999999999999999987665 3    9999999999999754321111   111223  344666555


Q ss_pred             HHHHHhhhCCCCchHHHHHHHHHHHHHhhcCCCCCCCCC-CCC-----CCCCCChhhHHHHHHHHHHHHhccCCCHHHHH
Q 000077          618 LKLLKAHIGLITSTKLSEEIEKFQAVVLDSTPRLQNGEA-ADS-----STSEGYADDIEAEANSYFHQMFSGQLTIEAMV  691 (2408)
Q Consensus       618 L~~L~~~~~~~~s~~~~e~l~~v~~~~i~~~PRL~n~~~-~d~-----~~~~~~~~dIE~ean~yfqkmY~~eisI~~iV  691 (2408)
                      |..+......     -.+.++.++..|++.||||++.+- +|+     .+.++++.|||+||.+|+|+||+++++|+++|
T Consensus       549 l~t~~~~V~q-----~~~~~k~~~~~~l~~fprli~~G~~~Ds~v~at~tt~s~~~dIE~E~~sy~q~~y~~~~~I~~~I  623 (2005)
T COG5103         549 LGTFTKAVEQ-----YIRILKPETVVVLNEFPRLIPHGLRRDSIVAATNTTRSKEIDIEEEASSYIQQIYNSQRGIESSI  623 (2005)
T ss_pred             HHHhHHHHHH-----HHHhcCcceEehHhhhhhhccCCCCcchhhhccCcccccCccHHHHHHHHHHHHHHhcccHHHHH
Confidence            5555332221     156778888899999999999874 454     35678999999999999999999999999999


Q ss_pred             HHHHHhhcCCccccchhHHHHHHhhhhhhccCCCCcHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHhcCCCCCcc
Q 000077          692 QMLARFKESSVKREHSIFECMIGNLFEEYRFFPKYPERQLRIAAVLFGSIIKHQLVTHLTLGIALRGVLDALRKPADSKM  771 (2408)
Q Consensus       692 ~~L~r~K~S~~~rdqdvFaCMih~LFdEYrFF~~YP~~eL~~TAvLFGslI~~~Lv~~~~L~iALr~ILeAlr~pp~skM  771 (2408)
                      +.||+|++|++|||+|+|+|+.|.|||||+||++||+++|++|||||||||+++|+++.+|++|+|||..++++|++|||
T Consensus       624 ~~l~~f~~senprd~elfsci~hal~~ey~ff~dyPl~ALaltavLfGslI~f~ll~~~~L~vA~ryI~~~lk~P~~skm  703 (2005)
T COG5103         624 NQLKEFLRSENPRDKELFSCIFHALLEEYGFFYDYPLSALALTAVLFGSLIKFRLLPKPYLRVAIRYIKGSLKHPENSKM  703 (2005)
T ss_pred             HHHHHHhhcCCcchHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhcCCCchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHhhhhhhHHHHHHhcccccccccHHHHHHHHHHHHhhhcCCCCCCCCCCCcccccccccccCCCCCcc
Q 000077          772 FVFGTKALEQFVDRLIEWPQYCNHILQISHLRSTHAELVAFIERALARISSGHLESDGASNPAAHQHVSSQATSGNGEVS  851 (2408)
Q Consensus       772 f~FGiqAL~qF~~RL~EwPqyC~~Llqip~L~~t~p~l~~~ie~~l~~~~~~~~~~~~~~~~~~~q~~~~q~~~~~~~~~  851 (2408)
                      |+||+|||++|+.||++||+||+.++.||.|+. .|++|+.|-++..    ..+.       .+                
T Consensus       704 f~Fg~qal~~Fq~kLp~Yp~yc~~vl~ip~l~~-r~~iy~sivem~s----~eNt-------~~----------------  755 (2005)
T COG5103         704 FSFGFQALEVFQEKLPSYPSYCSEVLEIPTLNN-RILIYKSIVEMDS----NENT-------EV----------------  755 (2005)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHhccccccc-chHHHHHHHHHHh----ccCC-------cc----------------
Confidence            999999999999999999999999999999965 8999998865543    1100       00                


Q ss_pred             CCcccccccchhhhHHhhhcccccccccccccccccCCCCCccccCCCCCcccCCCCCchhhhhcccCCCccccccCCCc
Q 000077          852 GSGITQLGQQLSSQIQLQQRSESVVDDRHKVSAASSSDMKPLLSSIGQPSSVAPLGDTSSAQKLHNAVSAPAMLSISSGF  931 (2408)
Q Consensus       852 ~~~~~~~~~~~~~~~~~qq~~~g~l~~~~~~~~~~~~~~~p~~~~i~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  931 (2408)
                                                ++       +++++|.   ++..                             .|
T Consensus       756 --------------------------Ek-------a~p~~pm---~pl~-----------------------------~f  770 (2005)
T COG5103         756 --------------------------EK-------ANPTHPM---LPLE-----------------------------DF  770 (2005)
T ss_pred             --------------------------cc-------cCCCCcc---cchh-----------------------------hh
Confidence                                      00       0111111   1000                             00


Q ss_pred             cCCCCCccccccccccchHHHHHHhhhcCCCCCCCChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHHHHh
Q 000077          932 ARPSRGVTSTKFGSALNIETLVAAAERRETPIEAPASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVM 1011 (2408)
Q Consensus       932 ~~p~~~~~~~~~~~~~ni~tL~~a~e~~~~~~e~P~e~vqDKI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~WFA~YLV~ 1011 (2408)
                      ++                     ..-+-+...|.-++||..+|+|.+||++..|+..|++|+|+.|+|.|.+||+.|||.
T Consensus       771 v~---------------------~~v~c~~n~Eg~~~evV~~iLFaiNNl~~ln~n~ki~~lk~~Ltp~y~~wfs~y~vt  829 (2005)
T COG5103         771 VR---------------------LIVKCDANNEGRATEVVKSILFAINNLLDLNRNDKIHRLKEALTPGYVGWFSIYMVT  829 (2005)
T ss_pred             he---------------------eEeccccCccccHHHHHHHHHHHhhhHHhhhccchHHHHHHhcCcccccceeeEEEE
Confidence            00                     000001224555678888899999999999999999999999999999999999999


Q ss_pred             hhcccCCcchHHHHHHHHHhCChhHHHHHHHHHHHHHHHHhcccccccChHHHHHHHHhhhhhhhhhhhcCcccccCCCC
Q 000077         1012 KRASIEPNFHDLYLKFLDKVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREID 1091 (2408)
Q Consensus      1012 kRas~EPN~H~LYl~fl~~l~~~~L~~~Vl~eTy~~i~~LL~Se~~~~ss~eRslLKNLGsWLG~iTLarNkPI~~k~ld 1091 (2408)
                      +|++.|||||+||.++++.++++.||+.+.+.|.+.++.||+...-  +++|+++|||||+|||+|||||||||+|+++|
T Consensus       830 qR~~~e~n~~~ly~kvve~lgS~dly~~~~r~TL~~l~~ll~~~~e--s~~ekk~lKnLgswLG~ItLa~NkpIt~~q~~  907 (2005)
T COG5103         830 QRSTAEENCRRLYGKVVERLGSKDLYLRFSRKTLEFLKMLLDYRCE--SPSEKKVLKNLGSWLGRITLAKNKPITSEQFD  907 (2005)
T ss_pred             eeccccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhcccc--ChHHHHHHHHHHHHHhHHHHhhcCcccccccc
Confidence            9999999999999999999999999999999999999999997644  88999999999999999999999999999999


Q ss_pred             hhhHHHHHHhcCceEEEechhhhcccccCCCccccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHhhcCCCccccc
Q 000077         1092 PKSLIIEAYEKGLMIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDIT 1171 (2408)
Q Consensus      1092 ~K~LLleaY~~g~L~~VIPFV~KVLe~c~~S~vFkPPNPWtm~IL~lL~Ely~~~~LKlNLKFEIEVL~K~L~ld~~die 1171 (2408)
                      ||++|+|||+.||+..|||||||||++++.|+||||||||+||||+||.|||+++++||+||||||+|+||||++++.||
T Consensus       908 Fk~~lve~~~~~Ri~~vvpFV~k~L~~as~s~IFkPpNPW~mgILkLL~El~~~a~~~l~lkFEie~Ll~~lnv~~~~ik  987 (2005)
T COG5103         908 FKKFLVESVECRRILFVVPFVSKFLRQASCSIIFKPPNPWVMGILKLLSELHSCAPRVLRLKFEIEGLLRHLNVELVPIK  987 (2005)
T ss_pred             HHHHHHHHhhcCceEEeehHHHHHHHhcccceEecCCCchHHHHHHHHHHHHhcCcceeehhhhHHHHHHhcceeeccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccchhh---ccCCCCCCCCCcCCCCCcccCCCCccccCCCCCCCCCCCcCCCCCCCCCcccccccccccccCccc
Q 000077         1172 PTSLLKDRKRE---IEGNPDFSNKDVGASQPQLVPEVKPAIVSPLGHVDLPLDVASPPNSGGPTHLLSQYAAPLRLSSGT 1248 (2408)
Q Consensus      1172 Ps~~L~~r~~~---~~~~~d~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~ 1248 (2408)
                      |++.++++...   ++.               .+||.      -++ +++|.++          ..++||..        
T Consensus       988 Ps~~~~n~~V~ks~LEk---------------e~~Ed------vL~-a~~~d~~----------~~~~qyi~-------- 1027 (2005)
T COG5103         988 PSKSLGNHLVLKSRLEK---------------ELPED------VLN-AKFPDGT----------DYLAQYII-------- 1027 (2005)
T ss_pred             hhhhhCcHHHHHHHHhh---------------hchHH------HHh-hhccccc----------hHHHHHHH--------
Confidence            99999876531   110               11110      000 0111000          02233321        


Q ss_pred             chhHHHHhhccCCCCCCccccccccCCCCCCCcccccccCCCCCCceEEecccccccccchhhhhhHHHHHHHHHHhhhh
Q 000077         1249 LMEDEKLAALGISDQLPSAQGLFQASQSQSPFSVSQLSTPIPNIGTHVIINQKLTALGLHLHFQRVVPIAMDRAIKEIVS 1328 (2408)
Q Consensus      1249 l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s~~~i~~~ip~l~~~~~i~~~l~~~~~~p~Lk~iv~~Ai~rAIrEII~ 1328 (2408)
                        ++.  +                      ..+..|..+       .+...|       -|.+|++.++|++.+||||++
T Consensus      1028 --~~s--S----------------------q~TvtD~va-------~~~g~P-------~PaiK~~~Qlal~~SVrEI~~ 1067 (2005)
T COG5103        1028 --EDS--S----------------------QITVTDLVA-------RHVGSP-------KPAIKNLTQLALDLSVREICG 1067 (2005)
T ss_pred             --Hhh--h----------------------cchHHHHHH-------HHcCCC-------ChHHHHHHHHHHHHHHHHHHH
Confidence              000  0                      001001000       001111       289999999999999999999


Q ss_pred             hcchhhHHHHHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHhhhhHHHchHHHHHHHHHHHHHHhhcCCCcHHHHHHH
Q 000077         1329 GIVQRSVSIATQTTKELVLKDYAMESDETRIYNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGLTIASELLEQA 1408 (2408)
Q Consensus      1329 PVVeRSVtIA~iTT~eLV~KDFA~E~DE~kmr~AAh~MV~~LAgSLAlVTCkEPLr~si~~~Lr~ll~~~~~~~~~~E~~ 1408 (2408)
                      .|||||+.||++||..|++||||||.|+.++..||++||++|||+||+|||+|||++.|.+++|++..++.+....+.++
T Consensus      1068 aVVeks~gIAi~Tt~~l~~KDFa~ev~~s~l~~aar~Mv~~La~~La~vT~~EPlk~~i~~n~rs~a~~l~sv~~~~ae~ 1147 (2005)
T COG5103        1068 AVVEKSCGIAIQTTMALFKKDFAMEVEKSMLYVAARNMVVNLAKFLALVTAQEPLKACISGNVRSYAMKLCSVLDFSAEK 1147 (2005)
T ss_pred             HHHHHhccchhhHHHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhccHHHHHHHHhhhhhchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988877667778889


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCCCcCcccccccccCCCCCCCCCCCCCChhHH
Q 000077         1409 VQLVTNDNLDLGCAVIEQAATDKAIQTIDGEIAQQLSLRRKHREG-VGSSFFDPNIYAQGSMGVPEALRPKPGHLSVSQQ 1487 (2408)
Q Consensus      1409 i~~~vndNldLac~iIEKaA~EkAv~eIde~l~~~~~~RR~hre~-~g~~f~D~~~~~~~~~~LPepLrlkpgGl~~~Q~ 1487 (2408)
                      +..++++|++.||.+||||+++|+.++|+..|+.++..|||||++ ++.||+||++ +..+++||++|+++-||+||+|+
T Consensus      1148 vd~~~~eN~~va~~lIe~a~~~k~~~~i~aei~h~Iv~R~~Hrktt~n~PFvd~aa-a~~slnLps~L~ls~~~~Tpqqf 1226 (2005)
T COG5103        1148 VDKIAMENQDVACRLIERAGVSKVSESISAEIEHMIVERVRHRKTTPNLPFVDPAA-ANLSLNLPSSLELSIGKATPQQF 1226 (2005)
T ss_pred             HHHHHHhchhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhccCCCCCccCccc-CccccCCCcccccccCCcCHHHh
Confidence            999999999999999999999999999999999999999999998 7999999997 55578999999999999999999


Q ss_pred             HhhHhhhcCcCCCCCCCCCCccccCccCCCCchhhhhcccCCCCCCCCCCcCCCCCCCcccccCCccccCCCcccCcccc
Q 000077         1488 RVYEDFVRLPWQNQSSQGSHAMSAGSLTSSGDAAQASAYGLAGGQGNQGYSSSAGSTGFDAVSRPSDVASGTTESTSAGF 1567 (2408)
Q Consensus      1488 ~VYEdF~r~p~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 1567 (2408)
                      ++||||.|+|-..-   .+|.+.++.-+          -...+++         ++++     -|..+.      +.++.
T Consensus      1227 ~lyE~fD~l~ls~i---~~h~~~~~~n~----------~~Td~ad---------stda-----l~~nl~------nt~e~ 1273 (2005)
T COG5103        1227 SLYEDFDRLSLSTI---MGHIEKIAINA----------IDTDSAD---------STDA-----LNNNLN------NTVEN 1273 (2005)
T ss_pred             hhhhcccccccccc---ccccchhhhhh----------hcCChhh---------hhhh-----hccccc------hhhhh
Confidence            99999999763221   22222211100          0000000         0000     000000      00000


Q ss_pred             cccccc-cccCCCCCcccccccccccccCChhhhhhhccCCCCCCCCCCCCCCCCCCCchhhhccccccccccchhhhHH
Q 000077         1568 LSTSLV-HIGAADGGILHNSESESVNAAFTPAATELYAADSTEPVKEPGASSQSLPSTAAPERIGSSILEPSLQTRDALD 1646 (2408)
Q Consensus      1568 l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~le 1646 (2408)
                      -..|++ ++..            +...  .+.+..++              ..++|.. .+..+.         .    +
T Consensus      1274 eAnQta~~yq~------------n~L~--i~~ql~Ql--------------~~~~Py~-~~~~V~---------a----D 1311 (2005)
T COG5103        1274 EANQTALEYQE------------NLLI--IKAQLVQL--------------SKKIPYS-SKKNVI---------A----D 1311 (2005)
T ss_pred             HHHHHHHHHHH------------Hhhh--hhhHHHHh--------------cccCCcc-hhhcCc---------c----h
Confidence            000000 0000            0000  00000000              0011110 011111         0    0


Q ss_pred             HHHHHHHHHHHHhhcCccchhHHHHhhhhHHHHHhhcChhHHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHhHH
Q 000077         1647 KYHIVAQKLDALIGNDAREAEVQGVISEVPEIILRCISRDEAALAVAQKVFKGLYENASNNLHFSAHLAILAAIRDVCKL 1726 (2408)
Q Consensus      1647 ~~~~~~~~l~~l~~~~~~~~~i~~~i~~i~~~i~~~~~rde~al~~aqkv~~~L~~~~~~~l~~ev~~~~L~~L~~~~~~ 1726 (2408)
                      ..|-.   +.+.     . +++..++.+|...|.++   |+.++.++|.+++.|+..+.+++++||+.++||+||++|-+
T Consensus      1312 ~e~~~---lkE~-----~-NQ~~t~~~~Il~~Ia~s---d~~~l~c~q~c~~il~~~skSp~~~evls~~lEkic~~S~k 1379 (2005)
T COG5103        1312 EEHGL---LKEG-----K-NQFETVFRRILESIASS---DDKDLECIQLCRYILGHLSKSPSKEEVLSRCLEKICKISFK 1379 (2005)
T ss_pred             hhhhH---HHhh-----H-HHHHHHHHHHHHHhccc---hhhHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHhHhHH
Confidence            10101   1111     1 35667777777777664   99999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhccccccccCHHHHHHHHhhCCCChhhHHHHHHHHHhcCCChhHHHHHHHHHHHHhc-CCchhhHhhHHHH
Q 000077         1727 VVKELTSWVIYSDEERKFNRDITMGLIRSELLNLAEYNVHMAKLIDGGRNKAATEFAISLLQTLVT-DESRVVISELHNL 1805 (2408)
Q Consensus      1727 ~~kevt~wl~~~~d~rk~N~~vi~~Lir~~Li~~~e~D~~Lak~i~~~~n~~av~Fa~~Ll~~~l~-~~~~~~~~df~~t 1805 (2408)
                      ++|+|.||++|+.|.||||+|+|.+||+++||+..|||.+|++.|.+.. ..++|||+.|++..+. +.|..++.||.+|
T Consensus      1380 t~k~V~~wl~ysnD~rKfnip~I~slie~nli~~~E~D~~l~r~i~~~~-gnvtdFai~Ll~~~V~~e~pi~~~~dFI~t 1458 (2005)
T COG5103        1380 TQKEVLGWLIYSNDPRKFNIPLIGSLIEHNLINVVEYDQALSRKIPLAD-GNVTDFAIALLASLVTAEVPICTVYDFICT 1458 (2005)
T ss_pred             HhhhhheeeeecCChhhcCcHHHHHHHHhccchhhhHHHHHHhhccccc-cchHHHHHHHHHHHhccCCceeeHHHHHHH
Confidence            9999999999999999999999999999999999999999999997644 4589999999988887 5566789999999


Q ss_pred             HHHHHHHHHHhcCCCCcCCCCCCCccchhhHHhhhhcccccCCcccCcccCCCCCCCCCCCCChHHHHHHHHHHHHHhhc
Q 000077         1806 VDALAKLIEIVRNPAANANASSGATTAKDDKARQSKDKKAYSHTTANREDYNIPESVDPDPVGFPEQVSMLFAEWYQICE 1885 (2408)
Q Consensus      1806 leaL~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~eq~~~lF~EWv~l~~ 1885 (2408)
                      +|.|+.-.+    +           ..+.. .++..+....+             ........+.||+..+|.|||++.+
T Consensus      1459 Le~la~s~d----~-----------~vk~f-~~~~~~tm~~~-------------v~kgnKqq~ndqi~iVf~ewv~llr 1509 (2005)
T COG5103        1459 LEMLAGSSD----P-----------KVKDF-FQKISNTMMHI-------------VAKGNKQQLNDQIIIVFSEWVELLR 1509 (2005)
T ss_pred             HHHHhccCC----h-----------hHHHH-HHHHHHhhhhc-------------ccccccccccceEEEeeHHHHHHHH
Confidence            998865111    0           00000 00111100000             0001224677999999999999999


Q ss_pred             CCCCCchHHHHHHHHHHHcCcccCCchhHHHHHHHHHHHHHHhhhccccCCCCCCCCCccccccchhhhHHHHHHHHHHh
Q 000077         1886 LPGSNDAACTRYVLQLHQNGLLKGDDMTDRFFRRLTEVSVAHCLSSEVINPGTLQSPQQSQSLSFLAIDIYAKLMLSILK 1965 (2408)
Q Consensus      1886 ~~~~~~~~~~~Fi~qL~~~giL~~dd~~~~FfR~~~E~sV~~~~~~~~~~~g~~~~~s~~~~~~f~~iDAlakLi~~lvk 1965 (2408)
                      +...+|..-..|+.||+++|+++.+++...|||+.+|.+|..|.+..            +.+.+|..||||+.||+.+++
T Consensus      1510 n~~~nD~v~~~F~~ql~e~g~~s~~~~~~~ffk~sle~~i~aF~e~~------------pta~~y~~IDal~sLi~n~l~ 1577 (2005)
T COG5103        1510 NCRFNDTVPEMFLPQLMERGDYSASLDIRSFFKVSLEHFIRAFHERI------------PTAYCYLKIDALPSLIKNRLY 1577 (2005)
T ss_pred             hcccccccHHHHHHHHHHccCCCchHHHHHHHHhhHHHHHHHHhhcC------------CcccceeeccchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999997432            247899999999999999999


Q ss_pred             cCCCCCCCcHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHhhhcCCC
Q 000077         1966 CCPVEQGSSKIFLLSKILTVTVKFILKDAEEKKASFNPRPYFRLFINWLLDMSSLDPVADGSNFQILSAFANAFHVLQPL 2045 (2408)
Q Consensus      1966 ~~~~~~~~~k~~~L~kiLsivv~vl~~dhe~~~~~FnQRpyfRlfs~LL~el~~~d~~l~~~~~~il~~fa~~l~~LqP~ 2045 (2408)
                      +. +..+.++..|++||++++++|+.++|..+++.||+|+||||||++|.||.......++.-..+.+.|-++|..|||.
T Consensus      1578 ~e-G~te~T~s~~~~kii~~i~~VFae~h~~~~e~~h~~~fFrLfS~il~e~~dv~~~d~s~fv~~~Sv~y~~f~alqP~ 1656 (2005)
T COG5103        1578 EE-GSTEGTVSVLFRKIIKDILFVFAEAHRKRAEFVHNYLFFRLFSRILIETLDVIDEDTSCFVNNRSVVYSIFEALQPS 1656 (2005)
T ss_pred             Hh-ccccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHHHHHcCcc
Confidence            96 44556788999999999999999999999999999999999999999997755444555567888999999999999


Q ss_pred             CCCchhHHHhHHhhcccchHhhhcCCCCCChHHHHHHHHHHHHhhhhhhcCCCCCchHHHHhHhHHHHHHHHHhcchhHH
Q 000077         2046 KVPAFSFAWLELVSHRSFMPKLLIGNGQKGWPYIQRLLVNLLQFLEPFLRNAELGVPVRFLYKGTLRVLLVLLHDFPEFL 2125 (2408)
Q Consensus      2046 ~~PgFaFaWl~LISHR~FmP~lL~~~~~~GW~~~~~LL~~LlkFl~~~Lr~~~ls~~i~~lYkGtLRilLVLlHDFPEFL 2125 (2408)
                      +||||+|||++|+|||+.+|++|+.|+.+||..|..+|+++|||++  ++...++.+++++|+|+||+.||++||||-||
T Consensus      1657 ~fPgFtfawl~llSH~~llP~vL~v~Nd~~~d~f~~~lmsflKFlD--~s~~~v~~~~~~ly~Gflr~iLv~~hD~P~FL 1734 (2005)
T COG5103        1657 RFPGFTFAWLELLSHKFLLPKVLLVNNDKINDLFSEGLMSFLKFLD--LSEEGVVLVMEALYCGFLRTILVYLHDFPGFL 1734 (2005)
T ss_pred             cCCchHHHHHHHHHhhhhhhhhhhccchhhHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcchheeeeeeccCchHH
Confidence            9999999999999999999999999999999999999999999998  78878889999999999999999999999999


Q ss_pred             HHHhHhhhccCCCCccccccceecccCCCCCCCCCCCCCCCCCCCcCcCCCCccccchHHHHHHhhhhHHHHHHhccCCC
Q 000077         2126 CDYHFTFCDVIPPSCIQMRNIILSAFPRNMRLPDPSTPNLKIDLLPEIRDPPRIFSEVDAALRAKQMRADVDDYLKTGQP 2205 (2408)
Q Consensus      2126 ~eyh~~lcd~IP~~CiQLRNlILSAfP~~mrLPDPftp~LkvD~LpEi~~~P~I~~d~~~~L~~~~lk~~vD~yL~~r~~ 2205 (2408)
                      +++||++...+|+.|+||||+||||||++|.+||||..||||.++|+|+..|.++.|+...|  .++++.+|  |  |.+
T Consensus      1735 it~~yql~~~~P~e~vqlrNm~lSa~Psdlt~p~Pfa~~Lkv~~~P~~k~~p~~f~d~~v~l--e~~~s~~d--L--e~~ 1808 (2005)
T COG5103        1735 ITQIYQLFRRNPLECVQLRNMMLSAYPSDLTYPCPFAQGLKVQEYPHIKNFPNQFRDRIVPL--EGQNSFFD--L--EAC 1808 (2005)
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHhccccCcCCCchhcccccccChHhhhhhHHhcccccch--hhcccchh--h--HHH
Confidence            99999999999999999999999999999999999999999999999999999999998887  47899988  6  666


Q ss_pred             CcchHHHHHHHccCCccccccCCcc---ccHhHHHHHHHHHHHHHHHhhhccCCcccccCCCCchhhhh-hhHHHHHHHH
Q 000077         2206 GSSFLSELKQKLLLPPSEAASAGTR---YNVPLINSLVLYVGMQAIHQLQTRTSHAQSTGNNSSLTAFL-VSAALDIFQT 2281 (2408)
Q Consensus      2206 ~~~~l~~l~~~L~~~~~~~~~~G~~---yN~~LiNAlVLyVG~~Ai~~~~~~~~~~~~~~~~~~~~~f~-~s~~~~il~~ 2281 (2408)
                      .++.++.+.+++...-+.....|..   ++-..+-++|.|+|+.++.....               .|+ +|+.+.++..
T Consensus      1809 ~~S~l~~~~s~~~~d~y~~k~t~~~~~~~dn~~~~~~V~h~~~es~~~~~~---------------~f~~ks~~~t~l~~ 1873 (2005)
T COG5103        1809 LRSALQNRTSVKVTDLYIGKNTPLWVYLIDNLNEMDAVSHTVVESIKFMIE---------------RFMHKSEILTMLWI 1873 (2005)
T ss_pred             hhhhhhHHHHHHHHHhhccccCceeeeeeccHHHHHHHHHHHhhhHHHHHH---------------HHhccccHHHHHHH
Confidence            6677777777766544333333322   25578889999999998653211               233 3558999999


Q ss_pred             HHhccChhhHHHHHHHHHhhhcCCChhhHHHHHHHHHHhhccc----chhhHHHHHHHHHHHhccCCCCchHHHHHHHHH
Q 000077         2282 LIQDLDTEGRYLFLNAAANQLRYPNNHTHYFSFVLLYLYAEAN----QEIIQEQITRVLFERLIVNRPHPWGLLITFIEL 2357 (2408)
Q Consensus      2282 L~~~ld~EgRY~ll~aiaNQLRYPNsHThyFS~vlL~LF~e~~----~~~IqEqItRVLLERLIvnrPHPWGLliTFiEL 2357 (2408)
                      ++..+++|.||+++.||+|||||||+||+||||++|++|.+.+    +-.||||||||||||+||||||||||+|||+||
T Consensus      1874 ~~r~g~~~~rY~ll~ai~~qlRYp~ihTy~fs~vfl~~fkS~~~N~QkL~ikE~m~t~lLeRII~NrPH~WGl~i~FTeL 1953 (2005)
T COG5103        1874 RMRAGGPPKRYFLLTAILAQLRYPEIHTYDFSRVFLKSFKSHGYNPQKLLIKEQMTTVLLERIICNRPHPWGLLITFTEL 1953 (2005)
T ss_pred             HHhcCCCchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHcCCCCcchhheeHHHH
Confidence            9999999999999999999999999999999999999998863    457999999999999999999999999999999


Q ss_pred             hhCCCCccccCCcCcchHHHHHHHHHHHHhcCCCCCCC
Q 000077         2358 IKNPRYNFWNQSFIRCAPEIEKLFESVARSCGGLKPVD 2395 (2408)
Q Consensus      2358 iKNp~Y~Fw~~~Fv~~aPEIe~lF~svarsc~~~~~~~ 2395 (2408)
                      +||.+||||+||||+..|||.++|+++.+++|.+..+.
T Consensus      1954 lkNeD~Nf~k~Pyikr~~EI~~lfdsL~e~v~a~ssan 1991 (2005)
T COG5103        1954 LKNEDYNFWKHPYIKRNDEICRLFDSLHEHVMAPSSAN 1991 (2005)
T ss_pred             hcccccchhcCcccccCHHHHHHHHHHHHHhhCccccc
Confidence            99999999999999999999999999999999776544

>KOG1831 consensus Negative regulator of transcription [Transcription]	Back alignment and domain information

>PF04054 Not1: CCR4-Not complex component, Not1; InterPro: IPR007196 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human	Back alignment and domain information

>PF12842 DUF3819: Domain of unknown function (DUF3819); InterPro: IPR024557 The Ccr4-Not complex is a global regulator of gene expression that is conserved from yeast to human	Back alignment and domain information

>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G)	Back alignment and domain information

>KOG1831 consensus Negative regulator of transcription [Transcription]	Back alignment and domain information

>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		2408
4gml_A		235	Crystal Structure Of Human Not1 Mif4g Domain Length		7e-58
4gmj_A		229	Structure Of Human Not1 Mif4g Domain Co-Crystallize		8e-58
4b89_A		249	Mif4g Domain Of The Yeast Not1 Length = 249		8e-37
4b8b_A		603	N-Terminal Domain Of The Yeast Not1 Length = 603		4e-24

>pdb|4GML|A Chain A, Crystal Structure Of Human Not1 Mif4g Domain Length = 235

Back alignment and structure

Iteration: 1

Score = 224 bits (570), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 104/214 (48%), Positives = 154/214 (71%), Gaps = 2/214 (0%) Query: 970 VQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLD 1029 +Q+KI+FI NN+S N+ K +E E +KE++ PW +QY+VMKR SIEPNFH LY FLD Sbjct: 13 IQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLD 72 Query: 1030 KVNSKALNREIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRARE 1089 + + N+ ++ TY N KVLL S+ ++ +RSLLKNLG WLG +T+ +N+ + + Sbjct: 73 TLKNPEFNKMVLNETYRNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTD 132 Query: 1090 IDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSLAYQPPNPWTMAILGLLAEIYSMPN 1147 +D KSL++EAY KG ++ V+PF +K+LE S+ ++PPNPWTMAI+ +LAE++ + Sbjct: 133 LDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFRPPNPWTMAIMNVLAELHQEHD 192 Query: 1148 LKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKR 1181 LK+NLKF+IEVL KNL +D+ ++ P +LLKD+ R Sbjct: 193 LKLNLKFEIEVLCKNLALDINELKPGNLLKDKDR 226

PyMOL of 4gml

>pdb|4GMJ|A Chain A, Structure Of Human Not1 Mif4g Domain Co-Crystallized With Caf1 Length = 229

Back alignment and structure

>pdb|4B89|A Chain A, Mif4g Domain Of The Yeast Not1 Length = 249

Back alignment and structure

>pdb|4B8B|A Chain A, N-Terminal Domain Of The Yeast Not1 Length = 603

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		2408
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-18
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 90.3 bits (223), Expect = 5e-18
 Identities = 109/668 (16%), Positives = 206/668 (30%), Gaps = 220/668 (32%)

Query: 5   SSTVPSQIRFLLQSLNEANADSVFRELCQFIEYGIEGSTMMLQTCMDHLNLHGTGLKNPQ 64
           S    S    L  +L     + V +    F+E  +  +   L   M  +    T  + P 
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQK----FVEEVLRINYKFL---MSPIK---TEQRQPS 106

Query: 65  LESVVASVFKYIMDKP-NFSTVFSQ-SV----KITEINEQLLENLSDVLNLSLPERIGIG 118
           + + +   +    D+  N + VF++ +V       ++ + LLE L    N+ +   +G G
Sbjct: 107 MMTRM---YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKNVLIDGVLGSG 162

Query: 119 ---LALS--DSENLDALMCGKNF------------CMAQIERLCANPVPMNSAEQIQNII 161
              +AL    S  +   M  K F             +  +++L     P  ++       
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR------ 216

Query: 162 MFLQRSSDLSKHVDSLMQILS-LLQSKDHTQFVLNPVLPDELHDATSLRDLDLFHECRDD 220
                SS++   + S+   L  LL+SK +   +L  VL   + +A +    +L       
Sbjct: 217 --SDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VL-LNVQNAKAWNAFNL------- 264

Query: 221 DFDDILAEMEKEMSMGDVMNELGYGCSADASQCKEILSLFTPLT--EITLSRILGAIART 278
                                           CK IL     LT     ++  L A   T
Sbjct: 265 -------------------------------SCK-IL-----LTTRFKQVTDFLSAATTT 287

Query: 279 HAGLEDNQNTFST------FTLALGCSTMSDLP-------PLSSWNVDVLVKAIKQLAPN 325
           H  L+ +  T +           L C    DLP       P     + ++ ++I+     
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRP-QDLPREVLTTNPRR---LSIIAESIRD-GLA 342

Query: 326 T--NWIRV------------VENLDYEGFYIPTE-----EAFSFFM-SVYKYACQEPFPL 365
           T  NW  V            +  L+      P E     +  S F  S          P 
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLE------PAEYRKMFDRLSVFPPSA-------HIPT 389

Query: 366 HAVCGSVWKNTEGQLSFLRYAVASPPEVFTFAHSARQLPYVDAVPGLKLQSGQANHAWLC 425
             +   +W +                +V    +   +         L ++          
Sbjct: 390 ILLS-LIWFDVIKS------------DVMVVVNKLHKY-------SL-VEKQPKESTISI 428

Query: 426 LDL-LDVLCQLSEMG--HASFARSMLE-Y--PLKQCPEMLLLGMA------HINTAYNLI 473
             + L++  +L      H    RS+++ Y  P     + L+          HI   ++L 
Sbjct: 429 PSIYLELKVKLENEYALH----RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI--GHHLK 482

Query: 474 QYEVS--FAVFPMI----------IKSTMSNGMILHIWHVNPNIVLRGFVDAQNMEPDCT 521
             E      +F M+          I+   +       W+     +L      +  +P   
Sbjct: 483 NIEHPERMTLFRMVFLDFRFLEQKIRHDSTA------WNA-SGSILNTLQQLKFYKP--- 532

Query: 522 IRILEICQEL-KILSSVLEMIPSPFAIRLAVIASQKELVDLEKWLSINLSTYKDVFFEEC 580
             I +   +  ++++++L+     F  ++       +  DL   L I L    +  FEE 
Sbjct: 533 -YICDNDPKYERLVNAILD-----FLPKIEENLICSKYTDL---LRIALMAEDEAIFEEA 583

Query: 581 LKFVKEVQ 588
               K+VQ
Sbjct: 584 H---KQVQ 588

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		2408
4gmj_A		229	CCR4-NOT transcription complex subunit 1; mRNA dec	100.0
4b89_A		249	General negative regulator of transcription subun;	100.0
4b8b_A		603	General negative regulator of transcription subun;	100.0

>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A	Back alignment and structure

Probab=100.00  E-value=6.1e-81  Score=708.55  Aligned_cols=217  Identities=48%  Similarity=0.862  Sum_probs=214.4

Q ss_pred             CChhhhHhHhhhhhcCCcccHHHHHHHHHHHhhhcchhHhHHHHHhhhcccCCcchHHHHHHHHHhCChhHHHHHHHHHH
Q 000077          966 PASEVQDKISFIINNISALNVEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNREIVQATY 1045 (2408)
Q Consensus       966 P~e~vqDKI~FIiNNlS~~Nl~~K~~Elk~~L~~~y~~WFA~YLV~kRas~EPN~H~LYl~fl~~l~~~~L~~~Vl~eTy 1045 (2408)
                      ++|+|||||+|||||+|++|+++|++|+|++|+++|++|||+|||++|||+|||||+||++|+++++++.|+++|+++||
T Consensus         3 ~de~v~dki~Fi~NNls~~N~~~k~~elk~~l~~~y~~Wfa~YLV~~Ras~EpN~h~lY~~fl~~l~~~~l~~~vl~~T~   82 (229)
T 4gmj_A            3 LEENIQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNPEFNKMVLNETY   82 (229)
T ss_dssp             SCHHHHHHHHHHHHSCCSSTHHHHHHHHHHHSCGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CcHHhhhhheeehhcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccccccChHHHHHHHHhhhhhhhhhhhcCcccccCCCChhhHHHHHHhcCc--eEEEechhhhcccccCCCc
Q 000077         1046 ENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIIEAYEKGL--MIAVIPFTSKILEPCQSSL 1123 (2408)
Q Consensus      1046 ~~i~~LL~Se~~~~ss~eRslLKNLGsWLG~iTLarNkPI~~k~ld~K~LLleaY~~g~--L~~VIPFV~KVLe~c~~S~ 1123 (2408)
                      ++|++||+|++++.+++||++|||||+|||+|||||||||+||+||+|+||+|||++|.  |++|||||||||++|++|+
T Consensus        83 ~~i~~LL~s~~~~~~~~eR~~LKNLG~WLG~lTLarnkPI~~~~l~~K~LL~eay~~g~~rL~~viPFVcKvLe~~~~S~  162 (229)
T 4gmj_A           83 RNIKVLLTSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSV  162 (229)
T ss_dssp             HHHHHHHTSCCCTTCHHHHHHHHHHHHHHHHHTGGGTCCCCTTTCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTTTCT
T ss_pred             HHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHccCCCchhcccCHHHHHHHHHHCCCceEEEeehhHHHHHHhcccCC
Confidence            99999999999999999999999999999999999999999999999999999999995  9999999999999999999


Q ss_pred             cccCCCccHHHHHHHHHHHhcCCcccchhHHHHHHHHhhcCCCccccccccccccchhh
Q 000077         1124 AYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDMKDITPTSLLKDRKRE 1182 (2408)
Q Consensus      1124 vFkPPNPWtm~IL~lL~Ely~~~~LKlNLKFEIEVL~K~L~ld~~diePs~~L~~r~~~ 1182 (2408)
                      |||||||||||||++|+|||++|+||+|||||||||||+|++|++||+|+++|++|++.
T Consensus       163 iFkPPNPW~~~IL~lL~Ely~~~~lKlnlkFEIEvLfk~l~~~~~~i~ps~~l~~~~~~  221 (229)
T 4gmj_A          163 VFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLALDINELKPGNLLKDKDRL  221 (229)
T ss_dssp             TTSTTCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTCCGGGSCCCSGGGCSTTG
T ss_pred             cCCCCChhHHHHHHHHHHHHhCccchhhHHHHHHHHHHHcCCChhhcCchhhhhccchh
Confidence            99999999999999999999999999999999999999999999999999999999874

PyMOL of 4gmj

>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B	Back alignment and structure

>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00