Citrus Sinensis ID: 000114

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------1690------1700------1710------1720------1730------1740------1750------1760------1770------1780------1790------1800------1810------1820------1830------1840------1850------1860------1870------1880------1890------1900------1910------1920------1930------1940------1950------1960------1970------1980------1990------2000------2010------2020------2030------2040------2050------2060------2070------2080------2090------2100------2110------2120------2130------2140------2150------216
MEKNLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRGRPPELEEKLKKSAKKKKERDPDADAAAASEGTYQPKTKETRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEEEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVDVKEAGEE
ccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHccHHHHHcHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHccccccccccccccccccEEECcccEEEEEccccccccccccccEEEcccccHHHHHHccccccccHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHHHcccccccccccccEEEEEccHHHHHHHHHHHHHHHccccccEEEECcccccccHHHHccccEEEccccccHHHHccccccccccEEEEEEEEEEEccccccccHHHHHHHHHHHHHHccccccEEEEECcccccHHHHHHHHccccccccccccccccccccccEEEEECccccHHHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccccHHHHHHHcccCEEEcccccHHHHHHHHHHHHccccEEEEEccccccccccccEEEEEEcCEEEccccccEEEccHHHHHHHHHccccccccccCEEEEEEccccHHHHHHHccccccEEEccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHcccEEEEcccccEEccHHHHHHHHcccccHHHHHHHHHccccccHHHHHHHHHcccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHccccHHHHHcccHHHHHHHcccccHHHHHHHHHHccccEEEEEEEEEccccEEEEEEEEECcccccccccccccEEEEEEECccccEEEEEEEEEcccccccccEEEEEEEEccccccccEEEEEEEcccccccCECccccccccccccccccccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHHHHHHccccccEEEEEcccccccHHHHccccEEEEcHHHHHHHHHcccccccccEEEEEEEccHHHcccccccHHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHcccccccccccccccccccEEEEEEEcccccHHHHHHHccHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHcEEEEcccccHHHHHHHHHHHHcccEEEEEEcccccccccccccEEEEccCEEEcccccccECccHHHHHHHHcccccccccccCEEEEEEccccHHHHHHHHcccccEEEcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHcccEEEccccccccccHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHccccccccHHHHHcccHHHHHHHHcccHHHHHHHHHHHcccccEEEEEEEEcccccccccCEEEEEEEEEccccccccccEECccccccccccEEEEEEEccccEEEEEEEEEcccccEEEEEEECccccccCEEEEEEEEcccccccCEEEEEEEEcccccc
************ARFKQYEYRANSSLV*******************LWGKIDPRS**************************************GTYQPKTKETRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAV********IEKLLNPIPNHVFDQLVSIGKLITDYQD*********************************************************************************LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLAR**********************AIL***********************************************ADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVP**************KISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLK*******IL*****MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVDVKE****
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MEKNLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRGRPPELEEKLKKSAKKKKERDPDADAAAASEGTYQPKTKETRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAxxxxxxxxxxxxxxxxxxxxxDEEEEEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSASDGGRDRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVDVKEAGEE

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Putative U5 small nuclear ribonucleoprotein 200 kDa helicase Putative RNA helicase involved in the second step of RNA splicing.probableQ9U2G0
Putative U5 small nuclear ribonucleoprotein 200 kDa helicase Putative RNA helicase involved in the second step of RNA splicing.probableQ9VUV9
U5 small nuclear ribonucleoprotein 200 kDa helicase Putative RNA helicase involved in the second step of RNA splicing. May promote one or more conformational changes in the dynamic network of RNA-RNA interactions in the spliceosome. Appears to catalyze an ATP-dependent unwinding of U4/U6 RNA duplices.probableO75643

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
3.-.-.-Hydrolases.probable
3.6.-.-Acting on acid anhydrides.probable
3.6.4.-Acting on acid anhydrides; involved in cellular and subcellular movement.probable
3.6.4.13RNA helicase.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 4A4Z, chain A
Confidence level:very confident
Coverage over the Query: 495-538,550-718
View the alignment between query and template
View the model in PyMOL
Template: 4A4Z, chain A
Confidence level:very confident
Coverage over the Query: 1341-1554
View the alignment between query and template
View the model in PyMOL
Template: 2P6R, chain A
Confidence level:very confident
Coverage over the Query: 482-539,551-948,968-1198
View the alignment between query and template
View the model in PyMOL
Template: 2P6R, chain A
Confidence level:very confident
Coverage over the Query: 1340-1786,1803-2038
View the alignment between query and template
View the model in PyMOL
Template: 2Q0Z, chain X
Confidence level:very confident
Coverage over the Query: 1859-2155
View the alignment between query and template
View the model in PyMOL
Template: 2Q0Z, chain X
Confidence level:very confident
Coverage over the Query: 1024-1302
View the alignment between query and template
View the model in PyMOL
Template: 3DKP, chain A
Confidence level:very confident
Coverage over the Query: 1326-1522
View the alignment between query and template
View the model in PyMOL
Template: 3FHO, chain A
Confidence level:very confident
Coverage over the Query: 1344-1424,1436-1596,1632-1738
View the alignment between query and template
View the model in PyMOL
Template: 3SQW, chain A
Confidence level:very confident
Coverage over the Query: 460-759,794-897
View the alignment between query and template
View the model in PyMOL
Template: 2FZ4, chain A
Confidence level:very confident
Coverage over the Query: 427-535,550-671
View the alignment between query and template
View the model in PyMOL

Templates for Structure Prediction

ID ?Alignment Graph ?Confidence Level ? View Alignment and Template ?
Query
4f92, chain Bvery confident Alignment | Template Structure