Citrus Sinensis ID: 000114
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2158 | 2.2.26 [Sep-21-2011] | |||||||
| O75643 | 2136 | U5 small nuclear ribonucl | yes | no | 0.976 | 0.986 | 0.582 | 0.0 | |
| Q9VUV9 | 2142 | Putative U5 small nuclear | yes | no | 0.979 | 0.986 | 0.573 | 0.0 | |
| Q9U2G0 | 2145 | Putative U5 small nuclear | yes | no | 0.977 | 0.983 | 0.514 | 0.0 | |
| Q55CI8 | 2237 | Activating signal cointeg | yes | no | 0.980 | 0.945 | 0.483 | 0.0 | |
| Q9UT24 | 2176 | Pre-mRNA-splicing factor | yes | no | 0.970 | 0.962 | 0.473 | 0.0 | |
| F1NTD6 | 2211 | Activating signal cointeg | yes | no | 0.854 | 0.834 | 0.440 | 0.0 | |
| E1BNG3 | 2201 | Activating signal cointeg | no | no | 0.856 | 0.839 | 0.438 | 0.0 | |
| Q8N3C0 | 2202 | Activating signal cointeg | no | no | 0.856 | 0.839 | 0.432 | 0.0 | |
| E9PZJ8 | 2198 | Activating signal cointeg | no | no | 0.852 | 0.836 | 0.429 | 0.0 | |
| F1LPQ2 | 2197 | Activating signal cointeg | no | no | 0.794 | 0.780 | 0.447 | 0.0 |
| >sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2 | Back alignment and function desciption |
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Score = 2559 bits (6633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1262/2167 (58%), Positives = 1635/2167 (75%), Gaps = 59/2167 (2%)
Query: 9 AEAHARFKQYEYRANSSLVLTTDSRPRDT---HEPTGEPESLWGKIDPRSFGDRAFRGRP 65
A+ AR QYEY+ANS+LVL D D EPTGE SL GK++ GD+A R +P
Sbjct: 2 ADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTKP 61
Query: 66 PELEEKLKKSAKKKKERDPDADAAAA----SEGT-------YQPKTKETRAAYEAMLSVI 114
+++E+ + +K+ E D + SEG Y+PKTKETR YE +LS I
Sbjct: 62 -QMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI 120
Query: 115 QQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLIT 174
Q LG QP +I+ GAADE+LAVLKN+ +++ +++KEI+ LL + + LV++GK IT
Sbjct: 121 QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT 180
Query: 175 DYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEE----DEEEEEDV 230
DY GD + N +++D+ GV V+FE ++++ +E V+EE D E +E V
Sbjct: 181 DY--GGD---KEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAV 235
Query: 231 AEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKL 290
S + G + +++ L+ +DIDA+WLQR++S+ +D I QK
Sbjct: 236 VRCTLSANLVASGELM-------SSKKKDLHPRDIDAFWLQRQLSRFYDDAI---VSQKK 285
Query: 291 AEEVLKIL-AEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKK 349
A+EVL+IL DDRE EN+L+ L F+ F IK L ++R+ +++CT LA AQ + E+++
Sbjct: 286 ADEVLEILKTASDDRECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKER 345
Query: 350 IEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLV 409
I +M P+L+ L QLH T E IREE R + S D +
Sbjct: 346 IMGKMEA-DPELSKFLYQLHETEK---------EDLIREERSRRERVRQSRMDTDLETM- 394
Query: 410 DRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKP 469
D D G L RQ+LDL+ L F QG FMAN++C LP+GS R KGYEE+HVPA+K KP
Sbjct: 395 DLDQGGEALAPRQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKP 454
Query: 470 LDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAV 529
E+L+ + ++P++AQ F+G LNR+QS++Y++AL + +N+LLCAPTGAGKTNVA+
Sbjct: 455 FGSEEQLLPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVAL 514
Query: 530 LTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589
+ +L+++ + N DG+ N ++KI+Y+APM++LV E+VG+ RL Y + V EL+GD
Sbjct: 515 MCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQ 574
Query: 590 LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVAR 649
L +++I TQIIV TPEKWDIITRK G+RTYTQLV+L+I+DEIHLLHD+RGPVLE++VAR
Sbjct: 575 LCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVAR 634
Query: 650 TVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQV 709
+R IE T+E +RL+GLSATLPNYEDVA FLRV+ KGLFYFDNS+RPVPL Q Y+GI
Sbjct: 635 AIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITE 694
Query: 710 KKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKE 769
KK ++RFQ+MN++ YEK++ AGK+QVL+FVHSRKET KTARAIRD LE DTLG FL+E
Sbjct: 695 KKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLRE 754
Query: 770 DSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTAT 829
S S E+L++ + K+ +LKDLLPYGFAIHHAGMTR DR LVEDLF D H+QVLVSTAT
Sbjct: 755 GSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTAT 814
Query: 830 LAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889
LAWGVNLPAHTVIIKGTQ+Y+PEKG WTEL LDI+QMLGRAGRPQYD+ GEGI+IT H
Sbjct: 815 LAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHG 874
Query: 890 ELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPA 949
EL+YYLSL+NQQLPIESQ VSKL D LNAEIVLG VQNAK+A NW+GY YLYIRMLR+P
Sbjct: 875 ELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPT 934
Query: 950 LYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYIS 1009
LYG++ + LK D L +RR DLVHTAA +LD+NNLVKYD+K+G FQVT+LGRIAS+YYI+
Sbjct: 935 LYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYIT 994
Query: 1010 HGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEE 1069
+ T+ TYN+ LKPT+ +IEL R+FSLS EFK +TVR++EK+EL KLL+RVPIPVKES+EE
Sbjct: 995 NDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEE 1054
Query: 1070 PSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNL 1129
PSAKINVLLQA+ISQLKLEG +L +DMV++TQSAGRL+RA+FEIVL RGWAQL +K LNL
Sbjct: 1055 PSAKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNL 1114
Query: 1130 SKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTL 1189
KM+ KRMW PLRQF +P E++ K+EKK+F +ER YDL+ E+GELIR PKMG+T+
Sbjct: 1115 CKMIDKRMWQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTI 1174
Query: 1190 HKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYIL 1249
HK+VH FPKL L+ H+QPITR+ LKVELTITPDF WD+KVHG E FW++VED D E IL
Sbjct: 1175 HKYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVIL 1234
Query: 1250 HHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEK 1309
HHEYF+LK +Y +++H + F VP++EPLPPQYFIRVVSD+WL +T LPVSFRHLILPEK
Sbjct: 1235 HHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEK 1294
Query: 1310 YPPPTELLDLQPLPVTALRNPLYEALYQG-FKHFNPIQTQVFTVLYNTDDNVLVAAPTGS 1368
YPPPTELLDLQPLPV+ALRN +E+LYQ F FNPIQTQVF +YN+DDNV V APTGS
Sbjct: 1295 YPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGS 1354
Query: 1369 GKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGE 1428
GKTIC+EFAILR ++SE R VYI P+EALA++ Y DW KF L +VV LTGE
Sbjct: 1355 GKTICAEFAILRMLLQSSEG---RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGE 1411
Query: 1429 TAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488
T+ DLKLL KG IIISTPEKWD LSRRWKQRK VQ ++LF++DE+HLIGG+ GPVLEVI
Sbjct: 1412 TSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVIC 1471
Query: 1489 SRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVD 1548
SRMRYI+SQ+E IRIVALS+SL+NAKD+ W+G ++ FNF P VRPVPLE+HIQG +
Sbjct: 1472 SRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFN 1531
Query: 1549 ITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608
I++ + R+ +M KP + AI +H+ +KP +VFVPSRK RLTA+D++T + D Q+ F
Sbjct: 1532 ISHTQTRLLSMAKPVYHAITKHSP-KKPVIVFVPSRKQTRLTAIDILTTCAADI-QRQRF 1589
Query: 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSS 1668
L +++ P+++ + + LK TL +GVGYLHEGL+ ++ +V LF +G I+V V S S
Sbjct: 1590 LHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRS 1649
Query: 1669 MCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728
+CWG+ + AHLV++M TQYY+G+ +A+ DYP+ D+LQM+GHA+RPL D+ G+CVI+C
Sbjct: 1650 LCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS 1709
Query: 1729 RKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPN 1788
+K+++KKFLY+ PVESHL H +HD+FNAEIV IENKQDAVDYLTWTF+YRR+TQNPN
Sbjct: 1710 KKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPN 1769
Query: 1789 YYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTI 1848
YYNLQG+SHRHLSDHLSELVE T+SDLE SKCI IE++MD++P N GMIA+YYYI+YTTI
Sbjct: 1770 YYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTI 1829
Query: 1849 ERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHV 1908
E FS SL KT+++GL+E++++A+EY +PIR E+ ++R+L NPKF DPHV
Sbjct: 1830 ELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHV 1889
Query: 1909 KANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMV 1968
K N LLQAH SR Q+ L+ D EE+L A RL+QA VDV+SSNGWLS AL AME++QMV
Sbjct: 1890 KTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMV 1949
Query: 1969 TQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLD 2028
TQ MW +DS L QLPHF + KRC + K +E+VFD++EMED+ER LLQ++D Q+ D
Sbjct: 1950 TQAMWSKDSYLKQLPHFTSEHIKRCTD---KGVESVFDIMEMEDEERNALLQLTDSQIAD 2006
Query: 2029 IARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEG 2088
+ARFCNR+PNI++S+EV D +++R+G + + V LER+ E GPV + +P+ +EEG
Sbjct: 2007 VARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEV---TGPVIAPLFPQKREEG 2063
Query: 2089 WWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYAF 2148
WW+V+GD K+N L++IKR++LQ+K++VKLDF APA G YTLYFM D+YMGCDQEY F
Sbjct: 2064 WWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPA-TGAHNYTLYFMSDAYMGCDQEYKF 2122
Query: 2149 TVDVKEA 2155
+VDVKEA
Sbjct: 2123 SVDVKEA 2129
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Putative RNA helicase involved in the second step of RNA splicing. May promote one or more conformational changes in the dynamic network of RNA-RNA interactions in the spliceosome. Appears to catalyze an ATP-dependent unwinding of U4/U6 RNA duplices. Homo sapiens (taxid: 9606) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4 | Back alignment and function description |
|---|
Score = 2528 bits (6551), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1244/2171 (57%), Positives = 1624/2171 (74%), Gaps = 57/2171 (2%)
Query: 9 AEAHARFKQYEYRANSSLVLTTD----SRPRDTHEPTGEPESLWGKIDPRSFGDRAFRGR 64
A+A AR QYEY+ANS+LVL D RPR E TGE SL GK+D GDR R +
Sbjct: 2 ADAAARQLQYEYKANSNLVLQADVRLIERPR-RDEATGEVCSLVGKLDGTRMGDRYQRTK 60
Query: 65 PPELEE-KLKKSAKKKKERDPD--ADAAAASEG-------TYQPKTKETRAAYEAMLSVI 114
P + EE K+K+ + + + D + A SEG Y+PKT+ETR YE +LS I
Sbjct: 61 PEKTEERKVKRQKRDEAQYDFERMKGATLLSEGIDEMVGIVYRPKTQETRQTYEVLLSFI 120
Query: 115 QQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLIT 174
Q+ LG QP +I+ GAADEILAVLKND +K+ ++KK+I+ LL + + F LV++GK IT
Sbjct: 121 QEALGDQPRDILCGAADEILAVLKNDRLKDRERKKDIDSLLGAVTDERFALLVNLGKKIT 180
Query: 175 DYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEEEDVAEPN 234
D+ A A N E +D+ G+ V+FEE+ EEESD DM E +++ +D E
Sbjct: 181 DFGSDAVNALTAAPNNEEQIDETYGINVQFEES---EEESDNDMYGEIRDDDAQDEGEEA 237
Query: 235 ASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEV 294
+ +++ + + + SL+ DIDAYWLQR +S+ + D Q A +V
Sbjct: 238 RIDHTLHAENLANEEAANNVKKERSLHPLDIDAYWLQRCLSKFYK---DAMVSQSKAADV 294
Query: 295 LKILAEG-DDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEE 353
LKIL + DDR+ EN+L+ L +D F IK L NR V++CT LA AQ ER++I E+
Sbjct: 295 LKILKDAADDRDCENQLVLLLGYDCFDFIKQLKLNRQMVLYCTMLASAQTDSERQRIREK 354
Query: 354 MMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLVDRDA 413
M G LA IL QL ++ +E EAR S G+ A
Sbjct: 355 MRG-NSALAKILRQLDTGKSEDQEEG---------EAR------GSKRGKGDAEDGGAAA 398
Query: 414 DGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPN 473
G G RQLL+L+ +AF QG FMAN++C LP+GS R KGYEE+HVPA+K P D N
Sbjct: 399 AGQVAGVRQLLELEEMAFTQGSHFMANKRCQLPDGSYRKQRKGYEEVHVPALKPVPFDAN 458
Query: 474 EKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
E+L + ++P++ QP F+G LNR+QSR+YK+AL S +N+LLCAPTGAGKTNVA+LT++
Sbjct: 459 EELQPVDKLPKYVQPVFEGFKTLNRIQSRLYKAALDSDENMLLCAPTGAGKTNVALLTMM 518
Query: 534 QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593
+++ + N+DG+ N ++KI+YVAPMK+LV E+VGN RL Y++ V EL+GD LTR+
Sbjct: 519 REIGKHINEDGTINAQDFKIIYVAPMKSLVQEMVGNFGRRLACYNLTVSELTGDHQLTRE 578
Query: 594 QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653
QI TQ+IV TPEKWDIITRK G+RT+ LV+L+IIDEIHLLHD RGPVLE++VART+R
Sbjct: 579 QIAATQVIVCTPEKWDIITRKGGERTFVSLVRLVIIDEIHLLHDERGPVLEALVARTIRN 638
Query: 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713
IETT+E +RLVGLSATLPNY+DVA FLRV +KGLFYFDNSYRPV L QQYIG+ KK L
Sbjct: 639 IETTQEEVRLVGLSATLPNYQDVATFLRVKPDKGLFYFDNSYRPVSLEQQYIGVTEKKAL 698
Query: 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVS 773
+RFQ+MN++ YEK + AG++QVL+FVHSRKET KTARA+RD LE DTLG FLKE S S
Sbjct: 699 KRFQVMNEIVYEKTMEHAGRNQVLVFVHSRKETGKTARAVRDMCLEQDTLGSFLKEGSAS 758
Query: 774 REILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
E+L++ + VK+ +LK+LLPYGFAIHHAGMTR DR LVEDLF D H+QVLVSTATLAWG
Sbjct: 759 MEVLRTEAEQVKNTELKELLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWG 818
Query: 834 VNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRY 893
VNLPAHTVIIKGTQ+YNPEKG W ELS LD++QMLGRAGRPQYD+ GEGI+IT HSEL++
Sbjct: 819 VNLPAHTVIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGEGILITNHSELQF 878
Query: 894 YLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGL 953
YLSL+NQQLPIESQF+SKL D LNAEIVLGTVQ+ ++A NW+GYTYLYIRMLRNP LYG+
Sbjct: 879 YLSLLNQQLPIESQFISKLPDMLNAEIVLGTVQHLQDAVNWLGYTYLYIRMLRNPTLYGV 938
Query: 954 APEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTI 1013
+ + +K D L + RADL+HTAA L+R+ L+KYDRK+G+FQVTDLGRIAS+YY++H T+
Sbjct: 939 SHDAIKADPLLEQHRADLLHTAACCLERSGLIKYDRKTGHFQVTDLGRIASHYYLTHETM 998
Query: 1014 STYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAK 1073
TYN+ LK T+ +IEL R+FSLS EF++++VR++EK+EL KL++RVPIP+KES+EE SAK
Sbjct: 999 LTYNQLLKQTLSEIELFRVFSLSSEFRHISVREEEKLELQKLMERVPIPIKESIEEHSAK 1058
Query: 1074 INVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMV 1133
+NVLLQAYISQLKLEG +L SDMVFITQSA RL+RA+FEIVL RGWAQLA+K L L KM+
Sbjct: 1059 VNVLLQAYISQLKLEGFALMSDMVFITQSAARLMRAIFEIVLTRGWAQLADKTLTLCKMI 1118
Query: 1134 TKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFV 1193
+RMW TPLRQF +P+EI KLEKK F W R YDL P ELGELIR PK+G+T+HKFV
Sbjct: 1119 DRRMWQSMTPLRQFKKMPDEIAKKLEKKHFPWGRLYDLEPHELGELIRVPKLGKTIHKFV 1178
Query: 1194 HQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEY 1253
HQFPKL L+ H+QPITR L+VELTITPDF WD+KVHG E FWV++ED D E ILHHE+
Sbjct: 1179 HQFPKLELSTHIQPITRGTLRVELTITPDFQWDEKVHGQSEGFWVLIEDVDSELILHHEF 1238
Query: 1254 FMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPP 1313
F+LK++Y +++H L F VP++EPLPPQYF+R+VSD+W+G++T LPVSFRHLILPEK PP
Sbjct: 1239 FLLKQKYSQDEHQLKFFVPVFEPLPPQYFLRIVSDRWIGAETQLPVSFRHLILPEKNMPP 1298
Query: 1314 TELLDLQPLPVTALRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTI 1372
TELLDLQPLP++ALR P +E+ Y Q F FNPIQTQVF +YN+D+NV V APTGSGK
Sbjct: 1299 TELLDLQPLPISALRQPKFESFYSQRFPQFNPIQTQVFNAVYNSDENVFVGAPTGSGKMT 1358
Query: 1373 CSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD 1432
+EFAI+R S+ R VY+ EALA + DW KFG L ++VV+LTGET D
Sbjct: 1359 IAEFAIMRLFTTQSDA---RCVYLVSEEALADLVFADWHSKFG-SLDIKVVKLTGETGTD 1414
Query: 1433 LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492
LKL+ KGQ++I+T +KWD LSRRWKQRK VQ V+LFI+DEL L+GG+ GPVLE++ SRMR
Sbjct: 1415 LKLIAKGQLVITTADKWDVLSRRWKQRKNVQLVNLFIVDELQLVGGEEGPVLEIVCSRMR 1474
Query: 1493 YIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF 1552
YI+SQ+E +IRIVALS SL +A+D+ +W+G + FNF P VRP+PLE+HIQG ++T+
Sbjct: 1475 YISSQIEKQIRIVALSASLTDARDVAQWLGCNPNATFNFHPSVRPIPLELHIQGYNVTHN 1534
Query: 1553 EARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP 1612
R+ M+KP + AI++++ + KP +VFV SRK RLTA+D++TY++ D Q + F
Sbjct: 1535 ATRIATMSKPVYNAILKYSAH-KPVIVFVSSRKQARLTAIDVLTYAASDL-QPNRFFHAE 1592
Query: 1613 AEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWG 1672
E+++PF++ + ++ LK TL GV YLHEGL+ +D +V LF++G ++V V+S +CWG
Sbjct: 1593 EEDIKPFLERMTDKTLKETLAQGVAYLHEGLSASDHRLVEQLFDSGAVQVAVISRDLCWG 1652
Query: 1673 VPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEY 1732
+ ++AHLV++M TQ+Y+G+ +++ DYP+TD+LQM+G A+RP D KCV++C + +K++
Sbjct: 1653 MSISAHLVIIMDTQFYNGKNHSYEDYPITDVLQMIGRANRPNEDADAKCVLMCQSSKKDF 1712
Query: 1733 YKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNL 1792
+KKF+ + P+ESHL H +HD+FNAE+V IENKQDAVDYLTWTF+YRRLTQNPNYYNL
Sbjct: 1713 FKKFINEPLPIESHLDHRMHDHFNAEVVTKTIENKQDAVDYLTWTFLYRRLTQNPNYYNL 1772
Query: 1793 QGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFS 1852
QGV+HRHLSDHLSELVENT+SDLE SKCI +E+DMD P N GMIA+YYYI+YTTIE FS
Sbjct: 1773 QGVTHRHLSDHLSELVENTLSDLEQSKCISVEDDMDTLPLNLGMIAAYYYINYTTIELFS 1832
Query: 1853 SSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHH--QRFSFEN---PKFTDPH 1907
SL KT+++GLLE+++SA+EY + +R EE+V+R L + + N PKF DPH
Sbjct: 1833 LSLNSKTKVRGLLEIISSAAEYEDVVVRHHEEQVLRTLSQRLPNKLTGPNETAPKFNDPH 1892
Query: 1908 VKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQM 1967
+K N LLQAH SR Q+G L+ D E++L A RL+QA VDV+SSNGWLS A+ AME++QM
Sbjct: 1893 IKTNLLLQAHLSRLQLGPELQGDTEQILSKAIRLIQACVDVLSSNGWLSPAVAAMELAQM 1952
Query: 1968 VTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLL 2027
VTQ MW +DS L QLPHF ++ KRC E K IETVFD++E+ED++R LLQ+SD+Q+
Sbjct: 1953 VTQAMWSKDSYLKQLPHFSPEIVKRCTE---KKIETVFDIMELEDEDRTRLLQLSDLQMA 2009
Query: 2028 DIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEE 2087
D+ARFCNR+PNI++++EV D + + +G + + V LER+ E GPV + +P+ +EE
Sbjct: 2010 DVARFCNRYPNIELNYEVVDKDRINSGSTVNVVVQLEREDEV---TGPVIAPFFPQKREE 2066
Query: 2088 GWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYA 2147
GWW+V+GD KTN LL+IKR++LQ+K++VKLDF AP+ GK YTLY+M DSY+GCDQEY
Sbjct: 2067 GWWVVIGDPKTNSLLSIKRLTLQQKAKVKLDFVAPS-PGKHDYTLYYMSDSYLGCDQEYK 2125
Query: 2148 FTVDVKEAGEE 2158
F+++V + E
Sbjct: 2126 FSIEVGDFQSE 2136
|
Putative RNA helicase involved in the second step of RNA splicing. Drosophila melanogaster (taxid: 7227) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 2255 bits (5843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1116/2169 (51%), Positives = 1527/2169 (70%), Gaps = 59/2169 (2%)
Query: 9 AEAHARFKQYEYRANSSLVLTTD---SRPRDTHEPTGEPESLWGK-IDPRSFGDRAFRGR 64
A+ AR +QYEYR NS+LVL+ D + R EPTGE + K + GDRA +G+
Sbjct: 2 ADELARIQQYEYRQNSNLVLSVDYNLTDRRGREEPTGEVLPITDKEMRKMKMGDRAIKGK 61
Query: 65 PP-----ELEEKLKKSAKKKKERDPDADAAAASEGTYQPKTKETRAAYEAMLSVIQQQLG 119
P + +K ++ R+ D G Y+P+T+ET+ YE +LS I LG
Sbjct: 62 APVQDQKKKRKKKDDEKAQQFGRNVLVDNNELM-GAYKPRTQETKQTYEVILSFILDALG 120
Query: 120 GQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLITDYQDA 179
P ++ GAADE+L LKND ++ +KKKE+E LL P+ + L+++ K I+D+
Sbjct: 121 DVPREVLCGAADEVLLTLKNDKFRDKEKKKEVEALLGPLTDDRIAVLINLSKKISDFS-- 178
Query: 180 GDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEEEDV-----AEPN 234
+ G D+ ++ GV V+F D DEEE D MV E + EE+ + +
Sbjct: 179 --IEEENKPEGDGDIYENEGVNVQF---DSDEEEDDGGMVNEIKGDSEEESEEEEGVDTD 233
Query: 235 ASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEV 294
+ ++ G + +D++ G+ L+ +DIDA+W+QR +++ F DP Q+ EV
Sbjct: 234 YTATLKGDGHLTEDEQKA---RGI-LHPRDIDAHWIQRSLAKYFK---DPLIAQQKQTEV 286
Query: 295 LKILAEG-DDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEE 353
+ IL DDR+ EN+L+ L FD+F IK L +NRL +++CT L R +++ER +IE++
Sbjct: 287 IGILKNAADDRDAENQLVLLLGFDQFEFIKCLRQNRLMILYCT-LLRQANEKERLQIEDD 345
Query: 354 MMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLVDRDA 413
M P+L IL L T + + +EKS R+ + K +A++ + +
Sbjct: 346 MRS-RPELHPILALLQETDEGSVVQ---VEKSKRDAEKSKKAATAAN---------EAIS 392
Query: 414 DGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPN 473
G W R++LDL+ L F QG M+N++C+LP+GS R K YEEIHVPA+K +P
Sbjct: 393 AGQWQAGRKMLDLNDLTFSQGSHLMSNKRCELPDGSYRRQKKSYEEIHVPALKPRPFAEG 452
Query: 474 EKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
EKL+ +SE+P+WAQPAF G LNR+QSR+ SAL S +++LLCAPTGAGKTNVA+LT+L
Sbjct: 453 EKLVSVSELPKWAQPAFDGYKSLNRIQSRLCDSALRSKEHLLLCAPTGAGKTNVALLTML 512
Query: 534 QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593
Q++ + +DGS +KIVY+APMK+LV E+VG+ S RL + + V E++GD ++++
Sbjct: 513 QEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQEMVGSFSKRLAPFGITVGEMTGDAQMSKE 572
Query: 594 QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653
Q TQ+IV TPEK+D++TRK G+R Y Q+V+LLIIDEIHLLHD+RGPVLESIV RT+RQ
Sbjct: 573 QFMATQVIVCTPEKYDVVTRKGGERAYNQMVRLLIIDEIHLLHDDRGPVLESIVVRTIRQ 632
Query: 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713
+E + RLVGLSATLPNY+DVA FLRV E L +FDNSYRPVPL QQYIG+ KK L
Sbjct: 633 MEQNHDECRLVGLSATLPNYQDVATFLRVKPEH-LHFFDNSYRPVPLEQQYIGVTEKKAL 691
Query: 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVS 773
+RFQ MN++ Y+K++ AGK QVL+FVHSRKETAKTA+AIRD LE DTL F++E S S
Sbjct: 692 KRFQAMNEVVYDKIMEHAGKSQVLVFVHSRKETAKTAKAIRDACLEKDTLSAFMREGSAS 751
Query: 774 REILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
EIL++ + K+ DLKDLLPYGFAIHHAGM R DR LVEDLF D H+QVL STATLAWG
Sbjct: 752 TEILRTEAEQAKNLDLKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHIQVLFSTATLAWG 811
Query: 834 VNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRY 893
VNLPAHTVIIKGTQIYNPEKG WTEL LDIMQMLGRAGRPQYD GEGI+IT HSEL+Y
Sbjct: 812 VNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGEGILITNHSELQY 871
Query: 894 YLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGL 953
YLSLMNQQLP+ESQ VS+L D LNAE+VLGTV + EA NW+GYT+L++RML+NP LYG+
Sbjct: 872 YLSLMNQQLPVESQMVSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLFVRMLKNPTLYGI 931
Query: 954 APEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTI 1013
E + D L +RRADL+HTA +LD+ L+KYD++SG Q T+LGRIAS++Y ++ ++
Sbjct: 932 THEQARADPLLEQRRADLIHTACVLLDKAGLIKYDKRSGIIQATELGRIASHFYCTYESM 991
Query: 1014 STYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAK 1073
TYN+ L T DI+L R+FS+S EFK ++VR +EK+EL K+ + PIP+KE+L+E SAK
Sbjct: 992 QTYNKLLVETCSDIDLFRIFSMSSEFKLLSVRDEEKLELQKMAEHAPIPIKENLDEASAK 1051
Query: 1074 INVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMV 1133
NVLLQAYISQLKLEG +L +DMVF+ QSAGRL RALFEIVL RGWA LA+K L L KMV
Sbjct: 1052 TNVLLQAYISQLKLEGFALQADMVFVAQSAGRLFRALFEIVLWRGWAGLAQKVLTLCKMV 1111
Query: 1134 TKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFV 1193
T+R W PL QF IP+E++ ++KK+++++R YDL +LG+LI+ PKMG+ L KF+
Sbjct: 1112 TQRQWGSLNPLHQFKKIPSEVVRSIDKKNYSFDRLYDLDQHQLGDLIKMPKMGKPLFKFI 1171
Query: 1194 HQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEY 1253
QFPKL + +QPITRT +++ELTITPDF WD+KVHG E FW+ +ED DGE ILHHE+
Sbjct: 1172 RQFPKLEMTTLIQPITRTTMRIELTITPDFKWDEKVHGSAEGFWIFIEDTDGEKILHHEF 1231
Query: 1254 FMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPP 1313
F+LK+++ ++H + VP+++P+PP Y++R+VSD+W+G++TVLP+SFRHLILPEKYPPP
Sbjct: 1232 FLLKQKFCSDEHVVKMIVPMFDPMPPLYYVRIVSDRWIGAETVLPISFRHLILPEKYPPP 1291
Query: 1314 TELLDLQPLPVTALRNPLYEALY--QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKT 1371
TELLDLQPLP++A+ N ++ ++ GFK FNPIQTQVF ++ +++NV+V AP GSGKT
Sbjct: 1292 TELLDLQPLPISAVTNKEFQTVFAESGFKVFNPIQTQVFRTVFESNENVIVCAPNGSGKT 1351
Query: 1372 ICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAM 1431
+E A+LR+ + E +AVYI P+E +A + Y DW+ + +G +V LTGE M
Sbjct: 1352 AIAELAVLRHFENTPEA---KAVYITPMEDMATKVYADWKRRLEPAIGHTIVLLTGEQTM 1408
Query: 1432 DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRM 1491
DLKL ++GQ+IISTPE+WD +SRRWKQRK VQ V LFI D+LH+IG G V EV+ SR
Sbjct: 1409 DLKLAQRGQLIISTPERWDNISRRWKQRKSVQNVKLFIADDLHMIGASNGAVFEVVCSRT 1468
Query: 1492 RYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITN 1551
RYI+SQ+E+ +R+VALS+SL NA+DLG W+G ++ FNF P RPVPL++ I+ ++++
Sbjct: 1469 RYISSQLESAVRVVALSSSLTNARDLGMWLGCSASATFNFMPSTRPVPLDLEIKSFNLSH 1528
Query: 1552 FEARMQAMTKPTFTAIVQHAKN--EKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFL 1609
+R AM +P + AI +HA KPALVFVP R+ R AV L+T + DG K
Sbjct: 1529 NASRFAAMERPVYQAICRHAGKLEPKPALVFVPVRRQTRPVAVALLTMALADGAPKRFLR 1588
Query: 1610 LWPAEEV-EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSS 1668
L ++ + + +I++E L+ ++ GVG+LHEG D +V LFE+ I+VCV+
Sbjct: 1589 LAEHDDTFQALLADIEDESLRESVSCGVGFLHEGTAPKDVHIVQQLFESNAIQVCVVPRG 1648
Query: 1669 MCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728
MC+ + ++A+LVVVM TQ+Y+G+ + + DYP+ D+L M+G A+RP+LD+ KCV++C
Sbjct: 1649 MCYQIEMSAYLVVVMDTQFYNGKYHVYEDYPIADMLHMVGLANRPILDSDAKCVVMCQTS 1708
Query: 1729 RKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPN 1788
++ YYKKFL D PVESHL H LHD+FNAEIV IENKQDA+DYLTWT +YRR+TQNPN
Sbjct: 1709 KRAYYKKFLCDPLPVESHLDHCLHDHFNAEIVTKTIENKQDAIDYLTWTLLYRRMTQNPN 1768
Query: 1789 YYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTI 1848
YYNLQG +HRHLSD LSELVE T+ DLE SKCI ++++MD N GMIASYYYISY TI
Sbjct: 1769 YYNLQGTTHRHLSDALSELVELTLKDLENSKCIAVKDEMDTVSLNLGMIASYYYISYQTI 1828
Query: 1849 ERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHV 1908
E FS SL KT+ + L+E+++++SE+ +P+R E+ ++R+L +N KFTDPHV
Sbjct: 1829 ELFSMSLKEKTKTRALIEIISASSEFGNVPMRHKEDVILRQLAERLPGQLKNQKFTDPHV 1888
Query: 1909 KANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMV 1968
K N L+ AH SR ++ L D E ++L A RL+QA VDV+SSNGWLS A+ AME+SQM+
Sbjct: 1889 KVNLLIHAHLSRVKLTAELNKDTELIVLRACRLVQACVDVLSSNGWLSPAIHAMELSQML 1948
Query: 1969 TQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLD 2028
TQ M+ + L QLPH L +R + K + +VF+L+E+E+D+R ++LQM +L D
Sbjct: 1949 TQAMYSNEPYLKQLPHCSAALLERAK---AKEVTSVFELLELENDDRSDILQMEGAELAD 2005
Query: 2029 IARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYP-KAKEE 2087
+ARFCN +P+I+++ E+++ + V + +++ L V LERD + PV + +P K KEE
Sbjct: 2006 VARFCNHYPSIEVATELEN-DVVTSNDNLMLAVSLERDNDIDGLAPPVVAPLFPQKRKEE 2064
Query: 2088 GWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYA 2147
GWWLV+GD+++N LL IKR+ + KS V+LDFAAP G + L+F+ DSY+G DQE+
Sbjct: 2065 GWWLVIGDSESNALLTIKRLVINEKSSVQLDFAAP-RPGHHKFKLFFISDSYLGADQEFD 2123
Query: 2148 FTVDVKEAG 2156
V+E G
Sbjct: 2124 VAFKVEEPG 2132
|
Putative RNA helicase involved in the second step of RNA splicing. Caenorhabditis elegans (taxid: 6239) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1 | Back alignment and function description |
|---|
Score = 2123 bits (5500), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1088/2250 (48%), Positives = 1519/2250 (67%), Gaps = 134/2250 (5%)
Query: 9 AEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRGRPPEL 68
+E AR KQY Y+ NS+LV ++ + EP GEPE+LWG++ GDR +P EL
Sbjct: 2 SEELARSKQYGYKENSNLVFYSERNRSELKEPKGEPETLWGRLRGE-MGDRVNYSKPLEL 60
Query: 69 EEKLKK---------------------SAKKKKERDP------------------DADAA 89
EK++ + KK K ++P D
Sbjct: 61 LEKMQNLKRKTIEKEGGDVNSSNDTYSTTKKVKNQNPLEKKSTNRKSNGNNNNEKPIDIL 120
Query: 90 AASE---GTYQPKTKETRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPD 146
+A+E G Y+PKTKETR YE +L+ IQ+ +G QP +V GA DEIL++LK+D ++ P+
Sbjct: 121 SATESFQGLYKPKTKETRITYETLLTFIQRYVGDQPTEVVKGALDEILSILKDDTIRAPE 180
Query: 147 KKKEIEKLLNPIPNHVFDQLVSIGKLITDYQD---AGDAAGNDAANGGEDLDDDMGVAVE 203
KK EI KLL + + F +L +GK ITD++D A + LDD+ GVAV
Sbjct: 181 KKIEISKLLKGLNDVSFAELTQLGKQITDFKDSELAKQQQQQQQQQSMDSLDDEQGVAVI 240
Query: 204 FEENDDDEEESDLDM----------------------VQEEDEEEEEDVAEPNASGAMQM 241
+E +++E SD ++ + +D E + N Q
Sbjct: 241 IDEEEEEENLSDFEIRDDDDDDDDVDNNEVDDNNNNDSEAQDSEIQTKDENNNDDDENQK 300
Query: 242 ----------GGGIDDDDESGDANEGMSL-NVQDIDAYWLQRKISQAFDQQIDPQQCQKL 290
D + D N L + +ID++W+QRKIS+ F++ D ++L
Sbjct: 301 IKENNNNNNKSQKPDTKNTKDDKNNNSKLISPNEIDSFWIQRKISE-FER--DHDLSKQL 357
Query: 291 AEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKI 350
AE+ L IL + + R E +L+ DK +K ++ N+ +++CT LA+A++ +ERKKI
Sbjct: 358 AEKTLNILRQPNVRRCEQQLVDLFTIDKLDFLKLIINNKQTILYCTLLAKAENDQERKKI 417
Query: 351 EEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRGLVD 410
E+EM P +IL++L TA +K +EK+ E+ + KD + ++ +
Sbjct: 418 EDEMSS-NPVTLSILNRLKGNEVTAATTEKTIEKT---ESNK-KDVEMKQQQQQQQDEIK 472
Query: 411 RDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPL 470
+ ++LL+L+ L+FQQG M N++ P+GS+R KG+EEIHVPA + P
Sbjct: 473 K--------PKKLLNLEELSFQQGSHLMTNKEFKFPKGSKREQYKGFEEIHVPARANPPF 524
Query: 471 DPNEKLIKISEMPEWAQPAFK--GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVA 528
+PNE+LI I E+PEW++ F+ G+ LNRVQS+++ A + +N+LL APT +GKTNVA
Sbjct: 525 NPNERLISIEELPEWSRLPFEESGVKSLNRVQSKLFDCAFKTDNNLLLSAPTSSGKTNVA 584
Query: 529 VLTILQQLALNRN-DDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD 587
+LTIL ++ NR+ D G +KIVY+APMK+LV E+VGN S RL+ Y + V EL+GD
Sbjct: 585 MLTILHEIGKNRDRDSGKIRLDAFKIVYIAPMKSLVQEMVGNFSKRLKSYGIVVNELTGD 644
Query: 588 QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIV 647
Q+LT +QI ETQIIVTTPEKWDIITRKSGDR YTQLVKL+IIDEIHLLHD RGPVLE IV
Sbjct: 645 QSLTNKQISETQIIVTTPEKWDIITRKSGDRAYTQLVKLIIIDEIHLLHDERGPVLECIV 704
Query: 648 ARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI 707
ART+R IE+T++ +RLVGLSATLPNYEDVA FLRV + G+FYFD+SYRP+PL QQYIGI
Sbjct: 705 ARTLRMIESTQQMVRLVGLSATLPNYEDVATFLRVEPD-GVFYFDSSYRPIPLEQQYIGI 763
Query: 708 QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767
+ +++ Q ND+ + KV G HQ+LIFVHSR+ETAKT + +RD A+E+ ++ R++
Sbjct: 764 S-DRGIKQLQRCNDITFTKVSERVGDHQILIFVHSRRETAKTGKDLRDRAVEDQSIDRYI 822
Query: 768 KEDSVSREILQ-SHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826
+ D SREIL+ + + +++ +LKDLLPYG IHHAG++R DR LVEDLFGD +QVL+S
Sbjct: 823 R-DPASREILRATASKQIQNAELKDLLPYGIGIHHAGLSRSDRSLVEDLFGDNRIQVLIS 881
Query: 827 TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886
TATLAWGVNLPAHTVIIKGTQIYNPEKG W ELSPLD+ QMLGRAGRP +D GEGIIIT
Sbjct: 882 TATLAWGVNLPAHTVIIKGTQIYNPEKG-WCELSPLDVTQMLGRAGRPPFDKEGEGIIIT 940
Query: 887 GHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLR 946
EL++YLSL+N QL IESQF+S++AD LNAEIVLG++Q ++A NW+GYTYLYI M+R
Sbjct: 941 SQHELQFYLSLLNTQLSIESQFISRIADNLNAEIVLGSIQTVRDAVNWLGYTYLYICMIR 1000
Query: 947 NPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYY 1006
NP LY ++ + ++D L +RR DLVH+AATIL++N+L+KYDRKSG Q T+LG++AS+Y
Sbjct: 1001 NPPLYEISYDDFEKDPLLEQRRLDLVHSAATILEKNSLIKYDRKSGKLQSTELGKVASHY 1060
Query: 1007 YISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKES 1066
YI++ ++S Y EHLKP+M DIEL R+FSLS EFK V VR+ EK EL KLL+RVPIP+KE+
Sbjct: 1061 YITNSSMSIYQEHLKPSMSDIELLRVFSLSSEFKNVVVREGEKFELEKLLERVPIPIKEN 1120
Query: 1067 LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKA 1126
+EEPS+KINVLLQ YIS LKL+G +L DM +I QSA R+ RALFEIVLK+GWAQLA+K
Sbjct: 1121 IEEPSSKINVLLQTYISNLKLDGFALVVDMFYIAQSASRITRALFEIVLKKGWAQLAKKI 1180
Query: 1127 LNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMG 1186
LNL+KM+ +MWS Q+PLRQF+ I ++L +LE++ E Y+ + Q+LG I+ P G
Sbjct: 1181 LNLAKMIDSKMWSSQSPLRQFHKISPKVLNQLERRGIPIEDLYEYNSQQLGNAIQNPSEG 1240
Query: 1187 RTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGE 1246
+ L +H FPKL L AHVQPI +L+VEL+ITPDF +D++ H +W+IVED DGE
Sbjct: 1241 KQLFDLIHNFPKLDLTAHVQPILHGLLRVELSITPDFQYDERYHNNSIGWWIIVEDVDGE 1300
Query: 1247 YILHHEYFMLKKQYIE-EDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLI 1305
IL+ EYF LKK+ + ED ++FTVP+ +PLPPQY++RV+SD W+G++ LP+SF+HLI
Sbjct: 1301 RILYFEYFSLKKKMVNGEDQLVSFTVPLSQPLPPQYYVRVISDHWIGAEYSLPISFQHLI 1360
Query: 1306 LPEKYPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAA 1364
LPEKYPP LLDLQPLP+ L++P E++++ F FN IQTQVF +Y ++DN ++A
Sbjct: 1361 LPEKYPPCRPLLDLQPLPIQVLKDPKAESIFKPTFSIFNAIQTQVFNCMYQSNDNAFISA 1420
Query: 1365 PTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG--QGLGMRV 1422
PT SGKT+C+E A++R ++ + V VY+AP++ LA R +DW KFG G+ V
Sbjct: 1421 PTNSGKTVCAEIALIRCFKQNPKAKV---VYLAPMQDLASVRLKDWSNKFGVKSPFGLVV 1477
Query: 1423 VELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482
+LTG+ D K+L++ II++ EKWD LSR+WKQRK +Q ++L I+DELHLIGG+ GP
Sbjct: 1478 SDLTGDAVTDNKILDRSNIIVTNCEKWDILSRKWKQRKALQSINLLIVDELHLIGGEYGP 1537
Query: 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEI 1542
+E++VSRMRYI++Q N +R++ALS+S+ANA+DL WIGAT +NF P VRP+P+E
Sbjct: 1538 TMEIVVSRMRYISTQTGNALRVIALSSSIANARDLVLWIGATPQTCYNFHPNVRPIPVEY 1597
Query: 1543 HIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLM-TYSSMD 1601
IQG + +F ARM AMTKPT + ++ KN++ ++VFVP+RK R A D++ SS +
Sbjct: 1598 QIQGFEFPHFNARMLAMTKPTVYEVAKN-KNQQ-SIVFVPTRKLSRSLAADIIANVSSFE 1655
Query: 1602 GDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIK 1661
+L+ + P+++++ LK +L+ GV + H+GL + ++ VV LF +G I+
Sbjct: 1656 DTLTKPYLVCEEHVLTPYLEDVDSFALKQSLQMGVAFYHDGLTERERRVVEILFRSGSIR 1715
Query: 1662 VCVMSSSMCWGVP-LTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRP-----LL 1715
V + + S+ W + + A LVV+MGTQ Y G++ + DYP+ D+LQM+G A + +
Sbjct: 1716 VLIATHSVAWLLDNVFAQLVVIMGTQLYQGKDIRYIDYPINDILQMIGRAGKQEGGGVIS 1775
Query: 1716 DNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLT 1775
+ K ++LCHAP+KEYYK FL + PVESHL H LHD FN+EIV I KQDA+DYLT
Sbjct: 1776 NKVAKVLLLCHAPKKEYYKMFLNEPLPVESHLDHCLHDQFNSEIVTKTITKKQDALDYLT 1835
Query: 1776 WTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMD-LSPSNH 1834
WTF+YRRL QNPNYYNL GVSH HLS+HLSELVENT+ +LE S CI I++D D +SP N
Sbjct: 1836 WTFLYRRLNQNPNYYNLSGVSHLHLSEHLSELVENTLVELEQSNCITIQDDQDKVSPLNL 1895
Query: 1835 GMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQ 1894
G+IASYYY+ Y TIE F SSL TR +G+++++++A E+ LPIR E++++ +L H
Sbjct: 1896 GIIASYYYLKYQTIELFGSSLKSTTRRRGIMDIISNAPEFNSLPIRHREDQILMKLASHL 1955
Query: 1895 RFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGW 1954
+ P + + K N LLQ HFSR+ + +L DQ+ +L +A+RLLQA+VDVISSN W
Sbjct: 1956 PQKIDKPNYQEISTKVNVLLQCHFSRESISADLYQDQKFILENATRLLQAIVDVISSNSW 2015
Query: 1955 LSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDE 2014
L A+ AME+SQM+TQ MW+ DS+ QLPH K +R + IE+VFDL+ ++D+
Sbjct: 2016 LQPAIAAMELSQMITQAMWDSDSVFKQLPHMNK---RRIDAITSQGIESVFDLMSLDDNS 2072
Query: 2015 RRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVG 2074
R +LL +S + D+ + ++P+ID+S++VQD +++ A +T+++V+ERDL G E
Sbjct: 2073 RIQLLDLSQQESNDLVQSFMKYPDIDISYQVQDEDDLHADSIMTVEMVIERDL-GDDEEN 2131
Query: 2075 PVYSN---------RYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEA 2125
P+ N YPK K GWW ++GD+K N LLAIKR++ +K++VK +F PA
Sbjct: 2132 PIEINDSINVVSAPYYPKEKICGWWALIGDSKNNHLLAIKRITFLKKTKVKFEFPTPA-V 2190
Query: 2126 GKKTYTLYFMCDSYMGCDQEYAFTVDVKEA 2155
GK +LY DSY GCDQE+ +++ A
Sbjct: 2191 GKHQLSLYLFSDSYNGCDQEHELNINILPA 2220
|
Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: - |
| >sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=brr2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1992 bits (5161), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1033/2182 (47%), Positives = 1432/2182 (65%), Gaps = 88/2182 (4%)
Query: 17 QYEYRANSSLVLTTDSR--PRDTHEPTGEPESLWGKIDPRSFGDRAFRGRPPELEEKLKK 74
QY Y A S+LV D R R EPTGEPESL ++ G RA +P L +L +
Sbjct: 29 QYSYSAMSNLVTQADRRFVSRRDAEPTGEPESLVNRVSIADMGSRARIEKPSTLPLELTQ 88
Query: 75 SAKKKKERDPDADAAAASEGT-----------------------YQPKTKETRAAYEAML 111
++ R P DA + G Y P T ETR Y+ +L
Sbjct: 89 EVQEV--RLPRKDAESLEIGIRQPEREKRSSAILKYFDSFEILKYNPLTDETREVYDYIL 146
Query: 112 SVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNP-IPNHVFDQLVSIG 170
S IQQ LG Q I+ AAD I+ +LK+ ++ +KK+IE++L+ +P F QLV++G
Sbjct: 147 SFIQQYLGDQSPEILRSAADLIIELLKDSSLDEQGRKKQIEEVLSTELPQDRFSQLVNLG 206
Query: 171 KLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQE--------- 221
+TDY + N+ ++ GV V F E D++EE + E
Sbjct: 207 NRLTDYTVEQEEELNEEGV------NESGVPVLFNEADEEEEAVEAMEEDEVAEDEDVVL 260
Query: 222 ----EDEEEEEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQA 277
EEE++++ P+ ++ E +++ ++IDA+WLQR+I++
Sbjct: 261 ETSISQEEEKKNIENPDTEVTFISA-------DTKKVTEIPTVHPREIDAFWLQREIAKY 313
Query: 278 FDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCT 336
F D CQ+ + + L A+ D E+EN+L+ ++ F L++ L +NR +V CT
Sbjct: 314 F---ADAVVCQEKTNQAFEALSADYDLGELENELMSIFDYEHFYLVQLLTKNRWTIVSCT 370
Query: 337 RLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKN-LEKSIREEARRLKD 395
L RA EER +EE++ G + IL+ L T + N L ++ E+A
Sbjct: 371 MLKRAATDEERLGVEEQIRAAG--RSWILEALRPGAITIPDDGLNELNNNVVEKAEPAPV 428
Query: 396 ESASDGGRDRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNK 455
+ + + + +DL+ F +G M+N+ LPEGS R T K
Sbjct: 429 SEIP---------LSKTLTSHKIVPKHQVDLENYVFTEGSRLMSNKAVKLPEGSFRRTGK 479
Query: 456 GYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNIL 515
GYEEIHVPA L +E+L+KI E+PEW+ AF LNR+QS +Y A + +NIL
Sbjct: 480 GYEEIHVPAPNKAVLGADERLVKIKELPEWSHQAFLNTQSLNRIQSHLYPIAFGTDENIL 539
Query: 516 LCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575
LCAPTGAGKTNVA+L IL +L + +D SFN N+KIVY+AP+KALV E+V N S RL
Sbjct: 540 LCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFSKRLT 599
Query: 576 MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635
Y+++V EL+GD LT+QQI ETQIIVTTPEKWDIITRK+ D +Y LV+L+IIDE+HLL
Sbjct: 600 PYNIRVAELTGDSQLTKQQISETQIIVTTPEKWDIITRKANDLSYVNLVRLVIIDEVHLL 659
Query: 636 HDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSY 695
HD RGPVLESIVAR R E T E +RLVGLSATLPNY DVA FL V+ +KGLFYFD++Y
Sbjct: 660 HDERGPVLESIVARIFRHQEETLEQVRLVGLSATLPNYTDVASFLHVDPKKGLFYFDSTY 719
Query: 696 RPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRD 755
RP PL Q++IGI K P +R Q N+ CYEKV+ AGK+QVLIFVHSRKETAKTAR IRD
Sbjct: 720 RPCPLKQEFIGITEKTPFKRMQTTNEACYEKVMQHAGKNQVLIFVHSRKETAKTARFIRD 779
Query: 756 TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDL 815
ALE +T+G L+ D+ SREIL++ D +LKDLLPYGFAIHHAGM R DRQ EDL
Sbjct: 780 KALEEETIGHLLRSDAASREILRAEADSTSDENLKDLLPYGFAIHHAGMRREDRQTSEDL 839
Query: 816 FGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875
F DG +QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTELSP D++QMLGRAGRPQ
Sbjct: 840 FADGTIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQ 899
Query: 876 YDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWI 935
+D+YGEGIIIT HSEL+YYLSLMNQQLPIESQF+ +LAD LNAE+ LGTV++ ++ +W+
Sbjct: 900 FDTYGEGIIITAHSELQYYLSLMNQQLPIESQFMRRLADCLNAEVSLGTVRSIEDGVDWL 959
Query: 936 GYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQ 995
GYTYLY+RMLR+PALY + PE +D L ++RADL+H+AA +L++ L+ Y+R+SG
Sbjct: 960 GYTYLYVRMLRSPALYSVGPE-YDDDKYLVQKRADLLHSAAILLEKCKLLVYNRQSGTLT 1018
Query: 996 VTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKL 1055
T+LG++A+ YY++H +++ YN L T IEL R+FS S+EFK++ VR++EK+ELAKL
Sbjct: 1019 ATELGKVAASYYVTHNSMAIYNRLLMQTTSFIELFRVFSFSDEFKHIPVREEEKVELAKL 1078
Query: 1056 LDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVL 1115
L+RVPIP++E L+EP+AKIN LLQ+YIS+ +L+G +L +DMV++TQSAGR++RA+FEI L
Sbjct: 1079 LERVPIPIRERLDEPAAKINALLQSYISRQRLDGFALVADMVYVTQSAGRIMRAIFEISL 1138
Query: 1116 KRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQE 1175
+RGW+ +A +L+ KM+ KR+W +PLRQF P+E++ ++EKK+F W+RY+DL P E
Sbjct: 1139 RRGWSSVATLSLDTCKMIEKRLWPTMSPLRQFPNCPSEVIRRVEKKEFPWQRYFDLDPAE 1198
Query: 1176 LGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEP 1235
LGEL+ PK GR ++ V FP+L + AHVQPITR++++VEL I F WDD + G E
Sbjct: 1199 LGELVGVPKEGRRVYNMVQSFPRLSVEAHVQPITRSLVRVELVINSQFNWDDHLSGTSEA 1258
Query: 1236 FWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQT 1295
FW++VED DG+ +LH+E F L K+Y +++H +NFTVP+ EPLPP YFI++VSD+WL S T
Sbjct: 1259 FWILVEDVDGDRLLHYEQFFLLKKYKDDEHIVNFTVPLLEPLPPCYFIKIVSDRWLHSIT 1318
Query: 1296 VLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYN 1355
+P+SF+ LI+PEK+P PT LLDLQ PV++L NP + +LY FK FN IQTQVF +Y
Sbjct: 1319 KVPLSFQRLIMPEKFPAPTPLLDLQNAPVSSLNNPSFISLYPNFKFFNKIQTQVFNSVYK 1378
Query: 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415
T+D+V + AP GSGKT+C+E A+L +H + G AVYIAP++ + RY +W KF
Sbjct: 1379 TNDSVFIGAPNGSGKTVCAELALL-HHWSQEDYGT--AVYIAPIQEIVDRRYEEWYGKFS 1435
Query: 1416 Q-GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 1474
G G +V+LTGE + DLKL++ +I TP +WD+LS+RW+ + +Q+V +I DEL
Sbjct: 1436 DLGDGKVLVKLTGERSQDLKLIQVADLIFCTPSQWDSLSKRWRSMRSIQKVDFYICDELQ 1495
Query: 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPG 1534
L+GG GP+ E+++SR+RY+A Q+E IR+V LS S+ANA+DLGEW+G + +FNF P
Sbjct: 1496 LLGGFYGPLYEIVISRIRYMAVQLEKNIRVVGLSVSVANARDLGEWLGTSPQCIFNFSPK 1555
Query: 1535 VRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDL 1594
RP PL IH+Q IT+F + M AM+KP + ++ K +VF P RK + A DL
Sbjct: 1556 DRPNPLTIHLQSFSITHFPSLMLAMSKPIYRSLKNFISQRKSTIVFTPDRKVAKQLAFDL 1615
Query: 1595 MTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSAL 1654
+T+S D D+ L+ E E F + +++ L+ +L+HG+ Y+ E + DQ +V L
Sbjct: 1616 VTFSMADEDE----YLFSLMENEAF-NKVEDAALQQSLKHGIAYISEITSSNDQNIVQYL 1670
Query: 1655 FEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714
+ G IKV + S + + + ++ V+VMGTQYYDG+E+ + DYP+++LLQM+G +
Sbjct: 1671 YRHGLIKVLIASRDVIYSLKAKSNAVIVMGTQYYDGKEHRYIDYPISELLQMLGFTASIG 1730
Query: 1715 LDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYL 1774
+ +++ +KEYYKKFL + P+ESHL +LHD F +EI IE+KQDAVD+L
Sbjct: 1731 SSELSQVILMTVTTKKEYYKKFLNEPLPMESHLQVWLHDAFVSEISTQTIESKQDAVDWL 1790
Query: 1775 TWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIII-EEDMDLSPSN 1833
TW++MYRRL NP YY LQ ++H +S+ LS+LVE T++DL ++ I + +ED N
Sbjct: 1791 TWSYMYRRLVANPAYYGLQDITHESVSEFLSDLVETTMNDLSEARLITVDDEDDSCVALN 1850
Query: 1834 HGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHH 1893
MIAS+Y I+Y T++ F+ SL+ +T+MKGLLE++ SA+EY QLPIR E+ V+ R+
Sbjct: 1851 LAMIASHYGITYITMQTFALSLSERTKMKGLLEIVTSAAEYEQLPIRKYEDIVLERIHSR 1910
Query: 1894 QRFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNG 1953
NP + DPH K+ LL AHFSR ++ L +DQ+ +L LL A VD +SS G
Sbjct: 1911 LPVRLSNPNYEDPHTKSFILLAAHFSRFELPPGLVIDQKFILTRVHNLLGACVDTLSSEG 1970
Query: 1954 WLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDD 2013
L + ME+SQMVTQ +W+RDS L Q+P+F L +RC + + + VFD+++++D+
Sbjct: 1971 HLIACIRPMEMSQMVTQALWDRDSPLKQIPYFDDALIERCNK---EGVHDVFDIIDLDDE 2027
Query: 2014 ERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEV 2073
+R ELL M + L A F N++P+ID+ FE++DSE+V A L V L R+LE EV
Sbjct: 2028 KRTELLHMDNAHLAKCAEFINKYPDIDIDFEIEDSEDVHANSPSVLIVQLTRELEEDEEV 2087
Query: 2074 -GPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTL 2132
V + +P K E WWLV+ D KT LLAIK+++L R K++F PA G Y L
Sbjct: 2088 DTTVIAPYFPAQKTEHWWLVISDDKT--LLAIKKITLGRSLTTKMEFVPPA-MGTLKYKL 2144
Query: 2133 YFMCDSYMGCDQEYAFTVDVKE 2154
DSYMG D E F +V E
Sbjct: 2145 SCFSDSYMGVDYEKEFECNVLE 2166
|
Involved in pre-mRNA splicing. May be involved in endoplasmic reticulum-associated protein degradation (ERAD) and required for growth at low and high temperatures (By similarity). Required for pre-spliceosome formation, which is the first step of pre-mRNA splicing. This protein is associated with snRNP U5. Has a role in branch site-3' splice site selection. Associates with the branch site-3' splice 3'-exon region. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus GN=ascc3 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 1608 bits (4165), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 856/1944 (44%), Positives = 1224/1944 (62%), Gaps = 100/1944 (5%)
Query: 293 EVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEE 352
E+L GD E++N+L L + F LI+ LL+NR +V R Q+ + + ++E
Sbjct: 261 EMLASPKSGD--ELQNELFELLGPEGFELIEKLLQNRSVIV--ERSLTCQNDNKFQTLQE 316
Query: 353 EMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREE----ARRLKDESASDGGRDRRGL 408
+ + A T E++K L K R E ARR K ++ DG GL
Sbjct: 317 QCKKFIGENAKPNYGCQVT--IQSEQEKLLMKQYRREEKRNARREK-QAGEDGEVSGEGL 373
Query: 409 VDRDA---------------DGGWLGQRQLLDLDTLAF----------QQGGLFMANRKC 443
+ D LG+++ +DL+ + + + F+ K
Sbjct: 374 LCFDPKELRLQRELALLNARSVPILGRQREVDLERIHYPHVYDSRAEAMKTSAFIGGAKV 433
Query: 444 DLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRV 503
LPE QR NK YEE+ +P + P+ EK++ I ++ E Q AFKGM +LNR+QS V
Sbjct: 434 FLPESVQRENNKMYEEVKIPHSEPMPIGIEEKIVYIKDLDEIGQLAFKGMKRLNRIQSIV 493
Query: 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563
+++A ++ +N+L+CAPTGAGKTN+A+LT+L ++ G +KIVYVAPMKAL
Sbjct: 494 FETAYNTNENMLICAPTGAGKTNIAMLTVLHEIR-QHVQHGVIKKDEFKIVYVAPMKALA 552
Query: 564 AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQ 622
AE+ S RL+ + V+EL+GD L++ +I TQ++VTTPEKWD++TRKS GD +Q
Sbjct: 553 AEMTNYFSKRLEPLGITVKELTGDMQLSKGEILRTQMLVTTPEKWDVVTRKSVGDVALSQ 612
Query: 623 LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682
LVKLLI+DE+HLLH++RGPVLESIVART+RQ+E+T+ IR++GLSATLPNY DVA FL V
Sbjct: 613 LVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHV 672
Query: 683 NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVH 741
N GLFYFD+ +RPVPL Q +IGI+ +Q+ M+++CYE V+ + HQV++FVH
Sbjct: 673 NPYIGLFYFDSRFRPVPLGQTFIGIKTTNKVQQLNHMDEVCYENVLKQIMAGHQVMVFVH 732
Query: 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801
+R T +TA A+R+ A N + FL + ++ L++L P GF+IHH
Sbjct: 733 ARNATVRTAMALREKAKNNGHICHFLSPQGSDYGQAEKQVQRSRNKQLRELFPDGFSIHH 792
Query: 802 AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSP 861
AGM R DR LVE+LF +GH++VLV TATLAWGVNLPAH V+IKGTQIY ++G++ +L
Sbjct: 793 AGMLRQDRSLVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGI 852
Query: 862 LDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIV 921
LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YL+L+ QQ PIESQF+ LAD LNAEI
Sbjct: 853 LDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQQNPIESQFLESLADNLNAEIA 912
Query: 922 LGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDR 981
LGTV N +EA WI YTYLY+RM NP +YG++ + + D L + R LV LD+
Sbjct: 913 LGTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQMDPGLEKHREQLVIEVGRKLDK 972
Query: 982 NNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKY 1041
+++++ ++G+F TDLGR AS+YYI + TI T+NE + ++ + S +EEF+
Sbjct: 973 ARMIRFEERTGFFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEGDILAIVSKAEEFEQ 1032
Query: 1042 VTVRQDEKMELAKLL-DRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFIT 1100
+ VR++E EL LL D +P +E KIN+LLQ YIS+ +L+ SL SD ++
Sbjct: 1033 IKVREEEIEELDTLLNDFCELPAPGGVENNYGKINILLQTYISRGELDSFSLISDSAYVA 1092
Query: 1101 QSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEK 1160
Q+A R++RALFEI L++ W + + LNLSK++ KR+W +PLRQF+ +P +L KLE+
Sbjct: 1093 QNAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWVSPLRQFSVLPPSVLSKLEE 1152
Query: 1161 KDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTIT 1220
K+ ++ D+ E+G ++ K+G + + VHQ P + + A +QPITRTVL+V L IT
Sbjct: 1153 KNLTVDKMKDMRKDEIGHMLHHVKIGLKVKQCVHQIPSIAMEATIQPITRTVLRVRLNIT 1212
Query: 1221 PDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFMLKKQYI--EEDHSLNFTVPIYEPL 1277
PDF W+D+VHG V EP+W+ VED ++I H EYF+++K+ + +E L FT+PI+EPL
Sbjct: 1213 PDFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFIIQKKQVITKEPQLLVFTIPIFEPL 1272
Query: 1278 PPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ 1337
P QY+IR VSD+WLG++ V ++F+HLILPE++PP TELLDLQPLPVTAL +P YE LY+
Sbjct: 1273 PSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPVTALGHPEYEVLYK 1332
Query: 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397
F HFNPIQTQ+F LY+TD NVL+ APTGSGKT+ +E AI R K + +AVYIA
Sbjct: 1333 -FTHFNPIQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTS---KAVYIA 1388
Query: 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK 1457
PL+AL +ER DW+++ + LG +VVELTG+ D++ + + +I++TPEKWD +SR W+
Sbjct: 1389 PLKALVRERIEDWKVRIEEKLGKKVVELTGDVTPDMRAIAQADLIVTTPEKWDGVSRSWQ 1448
Query: 1458 QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDL 1517
R YVQ+VS+ IIDE+HL+G + GPVLEVIVSR +I+S E +R+V LST+LANA+DL
Sbjct: 1449 NRSYVQKVSILIIDEIHLLGDERGPVLEVIVSRTNFISSHTEKPVRVVGLSTALANARDL 1508
Query: 1518 GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPA 1577
+W+ GLFNF P VRPVPLE+HIQG ++ RM M KP F AI H+ KP
Sbjct: 1509 ADWLNINQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMARMNKPAFQAIRSHSP-AKPV 1567
Query: 1578 LVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637
L+FV SR+ RLT++DL+ + + + D K +L E+ I +++ LK TL G+G
Sbjct: 1568 LIFVSSRRQTRLTSLDLIAFLATEDDPKQ-WLKMDEREMNDIIGTVRDSNLKLTLAFGIG 1626
Query: 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD 1697
H GL++ D++ V LF KI+V + +S++ WGV AHLV+V GT+YYDG+ + D
Sbjct: 1627 MHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIVKGTEYYDGKTRRYVD 1686
Query: 1698 YPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNA 1757
YP+TD+LQMMG A RP D+ GK VIL H +K++YKKFLY+ FPVES L L D+ NA
Sbjct: 1687 YPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLDVLADHLNA 1746
Query: 1758 EIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEA 1817
EI AG I +KQDA+DY+TWT+ +RRL NP YYNL VSH ++ +LS LVE ++ DLE
Sbjct: 1747 EIAAGTITSKQDAMDYITWTYFFRRLIMNPTYYNLDNVSHDTMNKYLSSLVEKSLFDLEC 1806
Query: 1818 SKCIIIEED-MDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQ 1876
S CI I ED + P +G IASYYY+ + TI F L P++ ++ LL +L +A EY
Sbjct: 1807 SYCIEIGEDNRTIEPLTYGRIASYYYLKHPTIGMFKDQLKPESSVEELLLILTNADEYTD 1866
Query: 1877 LPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQV-GGNLKLDQEEVL 1935
LP+R E+++ L H F H K + LLQAHFS + + D + VL
Sbjct: 1867 LPVRHNEDQMNSELAKHLPIEVNPHSFDSSHTKTHLLLQAHFSHAILPCPDYATDTKTVL 1926
Query: 1936 LSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPH--------FMK 1987
A R+ QAM+DV + +GWL AL + QMV QG W DS LL +P+ F K
Sbjct: 1927 DQAIRICQAMLDVTAHHGWLVAALNITNLVQMVVQGRWIHDSSLLTVPNIEVQHLYLFQK 1986
Query: 1988 DLAKRCQ------ENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIAR---FCNRFPN 2038
++ + + P + + + E ++D ++ S++Q I++ F +R P
Sbjct: 1987 WSQQKRKSVHGGYQGPIECLPELMAACEGKEDVFASIVD-SELQTAHISQAWNFLSRLPI 2045
Query: 2039 IDMSFEVQDS---------------------ENVR-----AGEDITLQVVLERD---LEG 2069
+++S ++ +N R A ++ LQ+ L+R +G
Sbjct: 2046 LNVSLSIKGCWDDPAQPQNEVPVPCLTADTRDNKRWIKLHADQEYVLQIHLQRTQMGYQG 2105
Query: 2070 RTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQR-KSRVKLDFAAPAEAGKK 2128
+ + V + R+PK K+EGW+L++G+ +L+A+KR R ++ V + F P GK
Sbjct: 2106 KQDSKAV-APRFPKVKDEGWFLILGEVDKKELIALKRTGYVRNRNTVSVAFYTPETPGKC 2164
Query: 2129 TYTLYFMCDSYMGCDQEYAFTVDV 2152
YTLY M DSY+G DQ+Y +++
Sbjct: 2165 IYTLYLMSDSYLGMDQQYDIYLNI 2188
|
3'-5' DNA helicase involved in repair of alkylated DNA. Promotes DNA unwinding to generate single-stranded substrate needed for alkhb3, enabling alkhb3 to process alkylated N3-methylcytosine (3mC) within double-stranded regions. Gallus gallus (taxid: 9031) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus GN=ascc3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1592 bits (4123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 854/1947 (43%), Positives = 1211/1947 (62%), Gaps = 99/1947 (5%)
Query: 293 EVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEE 352
++L + GD E++++L L D LI+ LL+NR+ +V R + + + + +++
Sbjct: 253 DMLASVKSGD--ELQDELFELLGPDGLELIEKLLQNRVTIV--DRFLNSSNDHKLQALQD 308
Query: 353 EMMGLGPDLAAILDQLHATRATAK-ERQKNLEKSIREEARRL--KDESASDGGRDRRGLV 409
+ L + + T + E++K L K R E +R+ +++ A + G GL+
Sbjct: 309 NCKKI---LGENAKPNYGCQVTIQSEQEKQLMKQYRREEKRIARREKKAGEDGEATEGLL 365
Query: 410 --------------------------DRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKC 443
RD D + + D A + F+A K
Sbjct: 366 CFDPKELRIHREQALMNARNVPILSRQRDTDVEKIRYPHVYDSQAEAMRTSA-FIAGAKM 424
Query: 444 DLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRV 503
LPEG QR NK YEE+ +P + P+ EK + I ++ E Q AFKGM +LNR+QS V
Sbjct: 425 ILPEGIQRENNKIYEEVKIPYTEPMPIGFEEKPVYIQDLDEIGQLAFKGMRRLNRIQSIV 484
Query: 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563
+++A ++ +N+L+CAPTGAGKTN+A+LT+L ++ G + +KIVYVAPMKAL
Sbjct: 485 FETAYNTNENMLICAPTGAGKTNIAMLTVLHEIR-QHFQQGVIKKNEFKIVYVAPMKALA 543
Query: 564 AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQ 622
AE+ S RL+ + V+EL+GD L++ +I TQ++VTTPEKWD++TRKS GD +Q
Sbjct: 544 AEMTNYFSKRLEPLGIVVKELTGDMQLSKNEILRTQMLVTTPEKWDVVTRKSVGDVALSQ 603
Query: 623 LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682
+VKLLI+DE+HLLH++RGPVLESIVART+RQ+E+T+ IR++GLSATLPNY DVA FL V
Sbjct: 604 IVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHV 663
Query: 683 NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVH 741
N GLF+FD +RPVPL Q ++GI+ +Q+ M+++CYE V+ V HQV++FVH
Sbjct: 664 NPCIGLFFFDGRFRPVPLGQTFLGIKSANKVQQLNNMDEVCYESVLKQVKAGHQVMVFVH 723
Query: 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801
+R T +TA ++ + A N + FL + ++ +++L P GF+IHH
Sbjct: 724 ARNATVRTAMSLIERAKNNGQICYFLPTQGPEYGHAEKQVQKSRNRQVRELFPDGFSIHH 783
Query: 802 AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSP 861
AGM R DR LVE LF +GH++VLV TATLAWGVNLPAH VIIKGTQIY ++G++ +L
Sbjct: 784 AGMLRQDRNLVESLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGI 843
Query: 862 LDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIV 921
LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YLSL+ QQ PIESQF+ LAD LNAEI
Sbjct: 844 LDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLESLADNLNAEIA 903
Query: 922 LGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDR 981
LGTV N +EA WI YTYLY+RM NP +YG++ + + D TL + R LV LD+
Sbjct: 904 LGTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQIDPTLAKHREQLVIEVGRKLDK 963
Query: 982 NNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKY 1041
+++++ ++GYF TDLGR AS+YYI + TI T+NE + ++ + S +EEF
Sbjct: 964 ARMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTESDIFAIVSKAEEFDQ 1023
Query: 1042 VTVRQDEKMELAKLLDR-VPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFIT 1100
+ VR++E EL LL + +E KIN+LLQ YIS+ +++ SL SD ++
Sbjct: 1024 IKVREEEIEELDTLLSNFCELSAPGGVENSYGKINILLQTYISRGEVDSFSLISDSAYVA 1083
Query: 1101 QSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEK 1160
Q+A R++RALFEI L++ W + + LNLSK++ KR+W +PLRQF+ +P IL +LE+
Sbjct: 1084 QNAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLWGWTSPLRQFSVLPPHILTRLEE 1143
Query: 1161 KDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTIT 1220
K+ ++ D+ E+G ++ +G + + VHQ P + + A +QPITRTVL+V L+I+
Sbjct: 1144 KNLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQPITRTVLRVTLSIS 1203
Query: 1221 PDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EEDHSLNFTVPIYEPL 1277
PDF W+D+VHG V EP+W+ VED ++I H EYF+ LKKQ I +E L FT+PI+EPL
Sbjct: 1204 PDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLVLKKQVISKEAQLLVFTIPIFEPL 1263
Query: 1278 PPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ 1337
P QY+IR VSD+WLG++ V ++F+HLILPE++PP TELLDLQPLPVTAL YEALY
Sbjct: 1264 PSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPVTALGCEAYEALY- 1322
Query: 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397
F HFNP+QTQ+F LY+TD NVL+ APTGSGKT+ +E AI R K + +AVYIA
Sbjct: 1323 NFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTS---KAVYIA 1379
Query: 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK 1457
PL+AL +ER DW+++ + LG +V+ELTG+ D+K + K +I++TPEKWD +SR W+
Sbjct: 1380 PLKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQ 1439
Query: 1458 QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDL 1517
R YV+QV++ IIDE+HL+G + GPVLEVIVSR +I+S E +RIV LST+LANA+DL
Sbjct: 1440 NRNYVKQVTILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDL 1499
Query: 1518 GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPA 1577
+W+ GLFNF P VRPVPLE+HIQG ++ RM +M KPTF AI H+ KP
Sbjct: 1500 ADWLNIRQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPTFQAIRSHSP-AKPV 1558
Query: 1578 LVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637
L+FV SR+ RLTA++L+ + + + D K +L E+E I I++ LK TL G+G
Sbjct: 1559 LIFVSSRRQTRLTALELIAFLATEEDPKQ-WLNMDEREMENIIGTIRDSNLKLTLAFGIG 1617
Query: 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD 1697
H GL++ D++ V LF KI+V + +S++ WGV AHLV++ GT+YYDG+ + D
Sbjct: 1618 MHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVD 1677
Query: 1698 YPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNA 1757
+P+TD+LQMMG A RP D+ GK VIL H +K++YKKFLY+ FPVES L L D+ NA
Sbjct: 1678 FPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNA 1737
Query: 1758 EIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEA 1817
EI G I +KQDA+DY+TWT+ +RRL NP+YYNL VSH ++ LS LVE ++ +LE
Sbjct: 1738 EIAGGTITSKQDAMDYITWTYFFRRLIMNPSYYNLSDVSHDSVNKFLSNLVEKSLVELEH 1797
Query: 1818 SKCIIIEED-MDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQ 1876
S CI I ED + P +G IASYYY+ + T++ F L P+ + LL +L+ A EY
Sbjct: 1798 SYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFKERLKPECGTEELLSILSDAEEYTD 1857
Query: 1877 LPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQV-GGNLKLDQEEVL 1935
LP+R E+ + L F PH KA+ LLQAH SR + + D + VL
Sbjct: 1858 LPVRHNEDHMNSELAKCLPLESNPHSFDSPHTKAHLLLQAHLSRTMLPCPDYDTDTKTVL 1917
Query: 1936 LSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMK-DLAKRCQ 1994
A R+ QAM+DV + GWL L + QMV QG W +DS LL +PH L +
Sbjct: 1918 DQALRVCQAMLDVAAHQGWLVTVLNITSLVQMVIQGRWLKDSSLLTIPHIENHHLHIFRK 1977
Query: 1995 ENPGK---------SIETVFDLVEMEDDERRELLQMSDVQL-----LDIARFCNRFPNID 2040
+PG SIE + +L+ + M + +L F + P ID
Sbjct: 1978 WSPGMKGPHAGYHGSIECLPELIHACAGKDHVFSSMIEKELPAPKMKQAWNFLSHLPVID 2037
Query: 2041 MSFEVQ------------------------DSENVR--AGEDITLQVVLERDL----EGR 2070
+ V+ D+ VR A ++ LQV L+R +G+
Sbjct: 2038 VGLSVKGWWDDAAEGHDEISITTVASDKHSDNRWVRLHADQEYVLQVSLQRVSLGFHKGK 2097
Query: 2071 TEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSR-VKLDFAAPAEAGKKT 2129
+ V + R+PK+K+EGW+L++G+ +L+A+KRV R V + F P G+
Sbjct: 2098 QDSHAV-TPRFPKSKDEGWFLILGEVDKRELIALKRVGYVRSHHMVSISFYTPEVPGRYI 2156
Query: 2130 YTLYFMCDSYMGCDQEYAFTVDVKEAG 2156
YTLYFM D Y+G DQ+Y + V A
Sbjct: 2157 YTLYFMSDCYLGLDQQYDIHLHVTPAS 2183
|
3'-5' DNA helicase involved in repair of alkylated DNA. Promotes DNA unwinding to generate single-stranded substrate needed for ALKHB3, enabling ALKHB3 to process alkylated N3-methylcytosine (3mC) within double-stranded regions. Enhances NF-kappa-B, SRF and AP1 transactivation. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens GN=ASCC3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1579 bits (4088), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 841/1946 (43%), Positives = 1205/1946 (61%), Gaps = 97/1946 (4%)
Query: 293 EVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEE 352
++L + GD E++++L L + LI+ LL+NR+ +V R + + + +++
Sbjct: 253 DMLASIKSGD--ELQDELFELLGPEGLELIEKLLQNRITIV--DRFLNSSNDHRFQALQD 308
Query: 353 EMMGLGPDLAAILDQLHATRATAK-ERQKNLEKSIREEARRL--KDESASDGGRDRRGLV 409
+ L + + T + E++K L K R E +R+ +++ A + GL+
Sbjct: 309 NCKKI---LGENAKPNYGCQVTIQSEQEKQLMKQYRREEKRIARREKKAGEDLEVSEGLM 365
Query: 410 --------------------------DRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKC 443
RDAD + + D A + F+A K
Sbjct: 366 CFDPKELRIQREQALLNARSVPILSRQRDADVEKIHYPHVYDSQAEAMKTSA-FIAGAKM 424
Query: 444 DLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRV 503
LPEG QR NK YEE+ +P + PL EK + I ++ E Q AFKGM +LNR+QS V
Sbjct: 425 ILPEGIQRENNKLYEEVRIPYSEPMPLSFEEKPVYIQDLDEIGQLAFKGMKRLNRIQSIV 484
Query: 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563
+++A ++ +N+L+CAPTGAGKTN+A+LT+L ++ G + +KIVYVAPMKAL
Sbjct: 485 FETAYNTNENMLICAPTGAGKTNIAMLTVLHEIR-QHFQQGVIKKNEFKIVYVAPMKALA 543
Query: 564 AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQ 622
AE+ S RL+ + V+EL+GD L++ +I TQ++VTTPEKWD++TRKS GD +Q
Sbjct: 544 AEMTDYFSRRLEPLGIIVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQ 603
Query: 623 LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682
+V+LLI+DE+HLLH++RGPVLESIVART+RQ+E+T+ IR++GLSATLPNY DVA FL V
Sbjct: 604 IVRLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHV 663
Query: 683 NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVH 741
N GLF+FD +RPVPL Q ++GI+ +Q+ M+++CYE V+ V HQV++FVH
Sbjct: 664 NPYIGLFFFDGRFRPVPLGQTFLGIKCANKMQQLNNMDEVCYENVLKQVKAGHQVMVFVH 723
Query: 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801
+R T +TA ++ + A + F + + ++ +++L P GF+IHH
Sbjct: 724 ARNATVRTAMSLIERAKNCGHIPFFFPTQGHDYVLAEKQVQRSRNKQVRELFPDGFSIHH 783
Query: 802 AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSP 861
AGM R DR LVE+LF +GH++VLV TATLAWGVNLPAH VIIKGTQIY ++G++ +L
Sbjct: 784 AGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGI 843
Query: 862 LDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIV 921
LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YL+L+ Q+ PIESQF+ LAD LNAEI
Sbjct: 844 LDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQRNPIESQFLESLADNLNAEIA 903
Query: 922 LGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDR 981
LGTV N +EA WI YTYLY+RM NP YG++ + + D TL + R LV LD+
Sbjct: 904 LGTVTNVEEAVKWISYTYLYVRMRANPLAYGISHKAYQIDPTLRKHREQLVIEVGRKLDK 963
Query: 982 NNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKY 1041
+++++ ++GYF TDLGR AS+YYI + TI T+NE + ++ + S +EEF
Sbjct: 964 AQMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEGDIFAIVSKAEEFDQ 1023
Query: 1042 VTVRQDEKMELAKLLDR-VPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFIT 1100
+ VR++E EL LL + +E KIN+LLQ YIS+ +++ SL SD ++
Sbjct: 1024 IKVREEEIEELDTLLSNFCELSTPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVA 1083
Query: 1101 QSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEK 1160
Q+A R++RALFEI L++ W + + LNLSK++ KR+W +PLRQF+ +P IL +LE+
Sbjct: 1084 QNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSILPPHILTRLEE 1143
Query: 1161 KDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTIT 1220
K ++ D+ E+G ++ +G + + VHQ P +++ A +QPITRTVL+V L+I
Sbjct: 1144 KKLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVMMEASIQPITRTVLRVTLSIY 1203
Query: 1221 PDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EEDHSLNFTVPIYEPL 1277
DF W+D+VHG V EP+W+ VED ++I H EYF+ LKKQ I +E L FT+PI+EPL
Sbjct: 1204 ADFTWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVISKEAQLLVFTIPIFEPL 1263
Query: 1278 PPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ 1337
P QY+IR VSD+WLG++ V ++F+HLILPE++PP TELLDLQPLP+TAL YEALY
Sbjct: 1264 PSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLPITALGCKAYEALY- 1322
Query: 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397
F HFNP+QTQ+F LY+TD NVL+ APTGSGKT+ +E AI R K + +AVYIA
Sbjct: 1323 NFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTS---KAVYIA 1379
Query: 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK 1457
PL+AL +ER DW+++ + LG +V+ELTG+ D+K + K +I++TPEKWD +SR W+
Sbjct: 1380 PLKALVRERMDDWKVRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQ 1439
Query: 1458 QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDL 1517
R YVQQV++ IIDE+HL+G + GPVLEVIVSR +I+S E +RIV LST+LANA+DL
Sbjct: 1440 NRNYVQQVTILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDL 1499
Query: 1518 GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPA 1577
+W+ GLFNF P VRPVPLE+HIQG ++ RM +M KP F AI H+ KP
Sbjct: 1500 ADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPAFQAIRSHSP-AKPV 1558
Query: 1578 LVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637
L+FV SR+ RLTA++L+ + + + D K +L E+E I +++ LK TL G+G
Sbjct: 1559 LIFVSSRRQTRLTALELIAFLATEEDPKQ-WLNMDEREMENIIATVRDSNLKLTLAFGIG 1617
Query: 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD 1697
H GL++ D++ V LF K++V + +S++ WGV AHLV++ GT+YYDG+ + D
Sbjct: 1618 MHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVD 1677
Query: 1698 YPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNA 1757
+P+TD+LQMMG A RP D+ GK VIL H +K++YKKFLY+ FPVES L L D+ NA
Sbjct: 1678 FPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNA 1737
Query: 1758 EIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEA 1817
EI G I +KQDA+DY+TWT+ +RRL NP+YYNL VSH ++ LS L+E ++ +LE
Sbjct: 1738 EIAGGTITSKQDALDYITWTYFFRRLIMNPSYYNLGDVSHDSVNKFLSHLIEKSLIELEL 1797
Query: 1818 SKCIIIEED-MDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQ 1876
S CI I ED + P +G IASYYY+ + T++ F L P+ + LL +L+ A EY
Sbjct: 1798 SYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFKDRLKPECSTEELLSILSDAEEYTD 1857
Query: 1877 LPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQV-GGNLKLDQEEVL 1935
LP+R E+ + L F PH KA+ LLQAH SR + + D + VL
Sbjct: 1858 LPVRHNEDHMNSELAKCLPIESNPHSFDSPHTKAHLLLQAHLSRAMLPCPDYDTDTKTVL 1917
Query: 1936 LSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHF---------- 1985
A R+ QAM+DV ++ GWL L + QMV QG W +DS LL LP+
Sbjct: 1918 DQALRVCQAMLDVAANQGWLVTVLNITNLIQMVIQGRWLKDSSLLTLPNIENHHLHLFKK 1977
Query: 1986 MKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIA-----RFCNRFPNID 2040
K + K SIE++ +L+ + M + +L F + P I+
Sbjct: 1978 WKPIMKGPHARGRTSIESLPELIHACGGKDHVFSSMVESELHAAKTKQAWNFLSHLPVIN 2037
Query: 2041 MSFEVQDSEN--------------------------VRAGEDITLQVVLERDLEGRTEVG 2074
+ V+ S + + A ++ LQV L+R G +
Sbjct: 2038 VGISVKGSWDDLVEGHNELSVSTLTADKRDDNKWIKLHADQEYVLQVSLQRVHFGFHKGK 2097
Query: 2075 P---VYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRV-KLDFAAPAEAGKKTY 2130
P + R+PK+K+EGW+L++G+ +L+A+KRV R V L F P G+ Y
Sbjct: 2098 PESCAVTPRFPKSKDEGWFLILGEVDKRELIALKRVGYIRNHHVASLSFYTPEIPGRYIY 2157
Query: 2131 TLYFMCDSYMGCDQEYAFTVDVKEAG 2156
TLYFM D Y+G DQ+Y ++V +A
Sbjct: 2158 TLYFMSDCYLGLDQQYDIYLNVTQAS 2183
|
3'-5' DNA helicase involved in repair of alkylated DNA. Promotes DNA unwinding to generate single-stranded substrate needed for ALKHB3, enabling ALKHB3 to process alkylated N3-methylcytosine (3mC) within double-stranded regions. Enhances NF-kappa-B, SRF and AP1 transactivation. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex subunit 3 OS=Mus musculus GN=Ascc3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1564 bits (4049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 831/1935 (42%), Positives = 1205/1935 (62%), Gaps = 96/1935 (4%)
Query: 305 EVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAI 364
E++++L L + LI+ LL+NR+ +V R + + + +++ + L
Sbjct: 263 ELQDELFELLGPEGLDLIEKLLQNRITIV--DRFLNSSSDHKFQVLQDSCKKI---LGEN 317
Query: 365 LDQLHATRATAK-ERQKNLEKSIREEARRL---KDESASDGGRDRRGLVDRDA------- 413
+ + T + E++K L K R E +R+ + ++ DG G++ D
Sbjct: 318 SKPNYGCQVTIQSEQEKQLMKQYRREEKRIARREKKAGEDGEVSGEGVLPFDPKELRIQR 377
Query: 414 --------DGGWLGQRQLLDLDTLAF----------QQGGLFMANRKCDLPEGSQRFTNK 455
+ LG+++ ++ + + + ++ F+A K LPEG QR K
Sbjct: 378 EHALLNARNAPILGRQRDVEFEKIRYPHVYDSQAQARETSAFIAGAKMILPEGIQRENTK 437
Query: 456 GYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNIL 515
YEE+ +P + P+ EK + I ++ E Q AFKGM +LNR+QS V+++A ++ +N+L
Sbjct: 438 LYEEVRIPYGEPMPVGFEEKPVYIKDLDEVGQLAFKGMKRLNRIQSIVFETAYNTNENML 497
Query: 516 LCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575
+CAPTGAGKTN+A+LTIL ++ + + G + +KIVYVAPMKAL AE+ S RL+
Sbjct: 498 ICAPTGAGKTNIAMLTILHEIRQHFHQ-GVIKKNEFKIVYVAPMKALAAEMTNYFSKRLE 556
Query: 576 MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQLVKLLIIDEIHL 634
+ V+EL+GD L++ +I TQ++VTTPEKWD++TRKS GD +Q+VKLLI+DE+HL
Sbjct: 557 PLGIVVKELTGDMQLSKSEILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHL 616
Query: 635 LHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNS 694
LH++RGPVLESIVART+RQ+E+T+ IR++GLSATLPNY DVA FL VN GLFYFD
Sbjct: 617 LHEDRGPVLESIVARTLRQVESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGR 676
Query: 695 YRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAI 753
+RPVPL Q ++GI+ +Q+ M+++CYE V+ V HQV++FVH+R T +TA ++
Sbjct: 677 FRPVPLGQTFLGIKSTNKMQQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSL 736
Query: 754 RDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVE 813
+ A + + FL + ++ +++L GF+IHHAGM R DR LVE
Sbjct: 737 IERAKNSGQISCFLPTEGPEYGHALKQVQKSRNKQVRELFSDGFSIHHAGMLRQDRNLVE 796
Query: 814 DLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873
+LF +GH++VLV TATLAWGVNLPAH V+IKGTQIY ++G++ +L LD+MQ+ GRAGR
Sbjct: 797 NLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGR 856
Query: 874 PQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACN 933
PQ+D +GEGIIIT H +L +YLSL+ QQ PIESQF+ LAD LNAEI LGTV N +EA
Sbjct: 857 PQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVR 916
Query: 934 WIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGY 993
W+ YTYLY+RM NP YG++ + + D TL + R L+ LD+ +++++ ++GY
Sbjct: 917 WMSYTYLYVRMRANPLAYGISHKAYQIDPTLRKHREQLLIEVGQKLDKAKMIRFEERTGY 976
Query: 994 FQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELA 1053
F TDLGR AS++YI + TI T+NE + ++ + S +EEF + VR++E EL
Sbjct: 977 FSSTDLGRTASHFYIKYNTIETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELD 1036
Query: 1054 KLLDR-VPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFE 1112
LL+ + +E KIN+LLQ YIS+ +++ SL SD ++ Q+A R++RALFE
Sbjct: 1037 ALLNNFCELSAPGGVENSYGKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFE 1096
Query: 1113 IVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLS 1172
I L++ W + + LNLSK++ KR+W +PLRQF+ +P IL +LE+K+ ++ D+
Sbjct: 1097 IALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQFSVLPPHILTRLEEKNLTVDKLKDMR 1156
Query: 1173 PQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGY 1232
E+G ++ +G + + VHQ P + + A +QPITRTVL+V L I PDF W+D+VHG
Sbjct: 1157 KDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQPITRTVLRVSLNIHPDFSWNDQVHGT 1216
Query: 1233 V-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EEDHSLNFTVPIYEPLPPQYFIRVVSDK 1289
V EP+W+ VED ++I H EYF+ LKKQ I +E L FT+PI+EPLP QY+IR VSD+
Sbjct: 1217 VGEPWWIWVEDPTNDHIYHSEYFLALKKQVINKEAQLLVFTIPIFEPLPSQYYIRAVSDR 1276
Query: 1290 WLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQV 1349
WLG++ V ++F+HLILPE++PP TELLDLQPLP+TAL YEALY F HFNP+QTQ+
Sbjct: 1277 WLGAEAVCIINFQHLILPERHPPHTELLDLQPLPITALGCKAYEALY-NFSHFNPVQTQI 1335
Query: 1350 FTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409
F LY+TD NVL+ APTGSGKT+ +E AI R K + +AVYIAPL+AL +ER D
Sbjct: 1336 FHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFNKYPTS---KAVYIAPLKALVRERMDD 1392
Query: 1410 WEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFI 1469
W+I+ + LG +V+ELTG+ D+K + K +I++TPEKWD +SR W+ R YVQQV++ I
Sbjct: 1393 WKIRIEEKLGKKVIELTGDVTPDMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNILI 1452
Query: 1470 IDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLF 1529
IDE+HL+G + GPVLEVIVSR +I+S E +RIV LST+LANA+DL +W+ GLF
Sbjct: 1453 IDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLF 1512
Query: 1530 NFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRL 1589
NF P VRPVPLE+HIQG ++ RM +M KP F AI H+ KP L+FV SR+ RL
Sbjct: 1513 NFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPAFQAIRSHSP-AKPVLIFVSSRRQTRL 1571
Query: 1590 TAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQE 1649
TA++L+ + + + D K +L +E++ I +++ LK TL G+G H GL++ D++
Sbjct: 1572 TALELIAFLATEEDPKQ-WLNMDEQEMDNIIGTVRDSNLKLTLAFGIGMHHAGLHERDRK 1630
Query: 1650 VVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGH 1709
V LF K++V + +S++ WGV AHLV++ GT+YYDG+ + D+P+TD+LQMMG
Sbjct: 1631 TVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGR 1690
Query: 1710 ASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQD 1769
A RP D+ GK VIL H +K++YKKFLY+ FPVES L L D+ NAEI G I +KQD
Sbjct: 1691 AGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQD 1750
Query: 1770 AVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEED-MD 1828
A+DY+TWT+ +RRL NP+YY+L VS ++ LS L+ ++ +LE S CI + ED
Sbjct: 1751 AMDYITWTYFFRRLIMNPSYYSLGDVSQDSINKFLSHLIGQSLVELELSHCIEVGEDNRT 1810
Query: 1829 LSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVR 1888
+ P G IASYYY+ + T++ F L P+ + LL +L+ A EY LP+R E+
Sbjct: 1811 IEPLTCGRIASYYYLKHKTVKMFKDRLKPECSTEELLSILSDAEEYTDLPVRHNEDHTNN 1870
Query: 1889 RLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQV-GGNLKLDQEEVLLSASRLLQAMVD 1947
L F PH KA+ LLQAH SR + + D + VL A R+ QAM+D
Sbjct: 1871 ELAKCLPIELNPHSFDSPHTKAHLLLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLD 1930
Query: 1948 VISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLP-------HFMKDLAKRCQENPGK- 1999
V +S GWL L + QMV QG W +DS LL +P H + + + K
Sbjct: 1931 VAASQGWLVTVLNITHLIQMVIQGRWLKDSSLLTIPNIEQHHLHLFRKWKPPVKSSHAKC 1990
Query: 2000 --SIETVFDLVEMEDDERRELLQMSDVQLLDIA-----RFCNRFPNIDMSFEVQDS---- 2048
SIE + +L+ + + M + +L F +R P I++ V+ S
Sbjct: 1991 RTSIECLPELIHACEGKDHVFSSMVEKELQPAKTKQAWNFLSRLPVINVGISVKGSWDDL 2050
Query: 2049 ------------------EN----VRAGEDITLQVVLERDL----EGRTEVGPVYSNRYP 2082
EN + A ++ LQV L+R +G+ E V + R+P
Sbjct: 2051 VEGHNELSISTLTADKRDENKWIKLHADQEYVLQVSLQRVHFGLPKGKHENHAV-TPRFP 2109
Query: 2083 KAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSR-VKLDFAAPAEAGKKTYTLYFMCDSYMG 2141
K K+EGW+L++G+ +L+A+KRV R + F P G+ +TLY M D Y+G
Sbjct: 2110 KLKDEGWFLILGEVDKRELMAVKRVGFVRTHHDASISFFTPETPGRYIFTLYLMSDCYLG 2169
Query: 2142 CDQEYAFTVDVKEAG 2156
DQ+Y ++V +A
Sbjct: 2170 LDQQYDIYLNVIKAN 2184
|
3'-5' DNA helicase involved in repair of alkylated DNA. Promotes DNA unwinding to generate single-stranded substrate needed for ALKHB3, enabling ALKHB3 to process alkylated N3-methylcytosine (3mC) within double-stranded regions. Enhances NF-kappa-B, SRF and AP1 transactivation. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
| >sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subunit 3 OS=Rattus norvegicus GN=Ascc3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1543 bits (3994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 798/1783 (44%), Positives = 1130/1783 (63%), Gaps = 69/1783 (3%)
Query: 430 AFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPA 489
A ++ F+A K LPEG QR K YEE+ +P + P+ EK + I ++ E Q A
Sbjct: 412 AARETSAFIAGAKMILPEGIQRENTKLYEEVRIPYSEPMPVGFEEKPVYIQDLDEVGQLA 471
Query: 490 FKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHS 549
FKGM +LNR+QS V+ +A ++ +N+L+CAPTGAGKTN+A+LT+L ++ + + G +
Sbjct: 472 FKGMKRLNRIQSIVFDTAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHFHQ-GVLKKN 530
Query: 550 NYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWD 609
+KIVYVAPMKAL AE+ S RL+ + V+EL+GD L++ +I TQ++VTTPEKWD
Sbjct: 531 EFKIVYVAPMKALAAEMTNYFSKRLEPLGIVVKELTGDMQLSKSEILRTQMLVTTPEKWD 590
Query: 610 IITRKS-GDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668
++TRKS GD +Q+VKLLI+DE+HLLH++RGPVLESIVART+RQ+E+T+ IR++GLSA
Sbjct: 591 VVTRKSVGDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLSA 650
Query: 669 TLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVV 728
TLPNY DVA FL VN GLFYFD +RPVPL Q ++GI+ +Q+ M+++CYE V+
Sbjct: 651 TLPNYLDVATFLHVNPYIGLFYFDGRFRPVPLGQTFLGIKSANKMQQLNNMDEVCYESVL 710
Query: 729 A-VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787
V HQV++FVH+R T +TA ++ + A + + FL ++
Sbjct: 711 KQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQISCFLPTQGPEYGHALKQVQKSRNK 770
Query: 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQ 847
+++L GF+IHHAGM R DR LVE+LF +GH++VLV TATLAWGVNLPAH VIIKGTQ
Sbjct: 771 QVRELFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAWGVNLPAHAVIIKGTQ 830
Query: 848 IYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQ 907
IY ++G++ +L LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YLSL+ QQ PIESQ
Sbjct: 831 IYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLSLLTQQNPIESQ 890
Query: 908 FVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGER 967
F+ LAD LNAEI LGTV N +EA W+ YTYLY+RM NP YG++ + + D TL +
Sbjct: 891 FLESLADNLNAEIALGTVTNVEEAVKWMSYTYLYVRMRANPLAYGISHKAYQMDPTLRKH 950
Query: 968 RADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDI 1027
R L+ LD+ +++++ ++GYF TDLGR AS+YYI + TI T+NE +
Sbjct: 951 REQLLIEVGQKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNTIETFNELFDAHKTEG 1010
Query: 1028 ELCRLFSLSEEFKYVTVRQDEKMELAKLLDR-VPIPVKESLEEPSAKINVLLQAYISQLK 1086
++ + S +EEF + VR++E EL LL+ + +E KIN+LLQ YIS+ +
Sbjct: 1011 DIFAIVSKAEEFDQIKVREEEIEELDALLNNFCELSAPGGVENSYGKINILLQTYISRGE 1070
Query: 1087 LEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQ 1146
++ SL SD ++ Q+A R++RALFEI L++ W + + LNLSK++ KR+W +PLRQ
Sbjct: 1071 MDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQ 1130
Query: 1147 FNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQ 1206
F+ +P IL +LE+K+ ++ D+ E+G ++ +G + + VHQ P + + A +Q
Sbjct: 1131 FSVLPPHILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQ 1190
Query: 1207 PITRTVLKVELTITPDFLWDDKVHGYV-EPFWVIVEDNDGEYILHHEYFM-LKKQYI-EE 1263
PITRTVL+V L I PDF W+D+VHG V EP+W+ VED ++I H EYF+ LKKQ I +E
Sbjct: 1191 PITRTVLRVSLNIYPDFSWNDQVHGTVGEPWWIWVEDPTNDHIYHSEYFLALKKQVINKE 1250
Query: 1264 DHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLP 1323
L FT+PI+EPLP QY+IR VSD+WLG++ V ++F+HLILPE++PP TELLDLQPLP
Sbjct: 1251 AQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILPERHPPHTELLDLQPLP 1310
Query: 1324 VTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQ 1383
VTAL YEALY F HFNP+QTQ+F LY+TD NVL+ APTGSGKT+ +E AI R
Sbjct: 1311 VTALGCKAYEALY-NFSHFNPVQTQIFHTLYHTDCNVLLGAPTGSGKTVAAELAIFRVFN 1369
Query: 1384 KASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIII 1443
K + +AVYIAPL+AL +ER DW+I+ + LG +V+ELTG+ D+K + K +I+
Sbjct: 1370 KYPTS---KAVYIAPLKALVRERMDDWKIRIEEKLGKKVIELTGDVTPDMKSIAKADLIV 1426
Query: 1444 STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIR 1503
+TPEKWD +SR W+ R YVQQV++ IIDE+HL+G + GPVLEVIVSR +I+S E +R
Sbjct: 1427 TTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEERGPVLEVIVSRTNFISSHTEKPVR 1486
Query: 1504 IVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPT 1563
IV LST+LANA+DL +W+ GLFNF P VRPVPLE+HIQG ++ RM +M KP
Sbjct: 1487 IVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQHYCPRMASMNKPA 1546
Query: 1564 FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNI 1623
F H ++P L+ +P R +T ++L+ + + + D K +L +E+E I +
Sbjct: 1547 FQESHTHCP-DRPCLL-LPERMLSSMTKLELIAFLATEEDPKQ-WLNMDEQEMENIIATV 1603
Query: 1624 QEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVM 1683
++ LK TL G+G H GL++ D++ V LF K++V + +S++ WGV AHLV++
Sbjct: 1604 RDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGVNFPAHLVIIK 1663
Query: 1684 GTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPV 1743
GT+YYDG+ + D+P+TD+LQMMG A RP D+ GK VIL H +K++YKKFLY+ FPV
Sbjct: 1664 GTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPV 1723
Query: 1744 ESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDH 1803
ES L L D+ NAEI G I +KQDA+DY+TWT+ +RRL NP+YYNL VS ++
Sbjct: 1724 ESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFFRRLIMNPSYYNLGDVSQDAINKF 1783
Query: 1804 LSELVENTISDLEASKCIIIEED-MDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMK 1862
LS L+ ++ +LE S CI + ED + P G IASYYY+ + T++ F L P+ +
Sbjct: 1784 LSHLIGQSLVELELSHCIEVGEDNRSIEPLTCGRIASYYYLKHKTVKMFKDRLKPECSTE 1843
Query: 1863 GLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQ 1922
LL +L+ A EY LP+R E+ L F PH KA+ LLQAH SR
Sbjct: 1844 ELLSILSDAEEYTDLPVRHNEDHTNNELAKCLPIELNPHSFDSPHTKAHLLLQAHLSRAM 1903
Query: 1923 V-GGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQ 1981
+ + D + VL A R+ QAM+DV +S GWL L + QMV QG W +DS LL
Sbjct: 1904 LPCPDYDTDTKTVLDQALRVCQAMLDVAASQGWLVTTLNITHLIQMVIQGRWLKDSSLLT 1963
Query: 1982 LPHF--------------MKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLL 2027
+P+ +K +C+ SIE + +L+ + + M + +L
Sbjct: 1964 IPNIEQHHLHLFRKWKPPVKGPHAKCR----TSIECLPELIHACEGKEHVFSSMVEKELQ 2019
Query: 2028 DIA-----RFCNRFPNIDMSFEVQDS----------------------EN----VRAGED 2056
F + P I++ V+ S EN + A +
Sbjct: 2020 PAKTKQAWNFLSHLPVINVGISVKGSWDDSVEGHNELSISTLTADKRDENTWIKLHADQQ 2079
Query: 2057 ITLQVVLER---DLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKS 2113
LQV L+R + + R+PK K+EGW+L++G+ +L+A+KRV R
Sbjct: 2080 YVLQVSLQRVHFEFHKVKHESHAVTPRFPKLKDEGWFLILGEVDKRELVAVKRVGFVRTH 2139
Query: 2114 R-VKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVDVKEA 2155
+ F P G+ +TLY M D Y+G DQ+Y ++V +A
Sbjct: 2140 HEASISFFTPEAPGRYIFTLYLMSDCYLGLDQQYDIFLNVTKA 2182
|
3'-5' DNA helicase involved in repair of alkylated DNA. Promotes DNA unwinding to generate single-stranded substrate needed for ALKHB3, enabling ALKHB3 to process alkylated N3-methylcytosine (3mC) within double-stranded regions. Enhances NF-kappa-B, SRF and AP1 transactivation. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2158 | ||||||
| 225433894 | 2177 | PREDICTED: U5 small nuclear ribonucleopr | 0.995 | 0.986 | 0.868 | 0.0 | |
| 449459768 | 2175 | PREDICTED: U5 small nuclear ribonucleopr | 0.995 | 0.988 | 0.853 | 0.0 | |
| 224136151 | 2157 | predicted protein [Populus trichocarpa] | 0.984 | 0.984 | 0.855 | 0.0 | |
| 449517355 | 2175 | PREDICTED: LOW QUALITY PROTEIN: U5 small | 0.995 | 0.988 | 0.853 | 0.0 | |
| 356556951 | 2183 | PREDICTED: U5 small nuclear ribonucleopr | 0.994 | 0.983 | 0.852 | 0.0 | |
| 356525813 | 2183 | PREDICTED: U5 small nuclear ribonucleopr | 0.994 | 0.983 | 0.852 | 0.0 | |
| 147802492 | 2144 | hypothetical protein VITISV_042645 [Viti | 0.980 | 0.986 | 0.846 | 0.0 | |
| 357451431 | 2223 | U5 small nuclear ribonucleoprotein 200 k | 0.994 | 0.965 | 0.826 | 0.0 | |
| 224121998 | 2175 | predicted protein [Populus trichocarpa] | 0.990 | 0.982 | 0.826 | 0.0 | |
| 297850522 | 2171 | EMB1507 [Arabidopsis lyrata subsp. lyrat | 0.993 | 0.988 | 0.815 | 0.0 |
| >gi|225433894|ref|XP_002266580.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3876 bits (10051), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1886/2172 (86%), Positives = 2030/2172 (93%), Gaps = 24/2172 (1%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
+LGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESL+GKIDP++FGDRA+RG
Sbjct: 3 HLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLYGKIDPKTFGDRAYRG 62
Query: 64 RPPEL-------------------EEKLKKSAKKKKERDPDADAAAASEGTYQPKTKETR 104
RPPEL E L + +K+++ ++ ++ ++ EG YQPKTKETR
Sbjct: 63 RPPELDEKLKKSKRKKEREPQNASEPVLSRQSKRRRIQE-ESVLSSTEEGVYQPKTKETR 121
Query: 105 AAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFD 164
AAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKN+ VKNPDKKKEIE+LLNPIPNH+FD
Sbjct: 122 AAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNETVKNPDKKKEIERLLNPIPNHIFD 181
Query: 165 QLVSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDE 224
QLVSIG+LITD+QD GDAAG AANG + LDDD+GVAVEFEEN+D+EEESDLDMVQE++E
Sbjct: 182 QLVSIGRLITDFQDGGDAAGPTAANGDDALDDDVGVAVEFEENEDEEEESDLDMVQEDEE 241
Query: 225 EEEEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDP 284
E+++ + + N SGAMQMGGGIDDDD +ANEGM+LNVQDIDAYWLQRKISQA++QQIDP
Sbjct: 242 EDDDVMEQ-NGSGAMQMGGGIDDDDMQ-EANEGMTLNVQDIDAYWLQRKISQAYEQQIDP 299
Query: 285 QQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQ 344
QQCQKLAEEVLKILAEGDDREVE KLL HLQFDKFSLIKFLLRNRLK+VWCTRLARA+DQ
Sbjct: 300 QQCQKLAEEVLKILAEGDDREVETKLLVHLQFDKFSLIKFLLRNRLKIVWCTRLARAEDQ 359
Query: 345 EERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRD 404
EERKKIEEEM G G DLAAIL+QLHATRATAKERQK LEKSIREEARRLKDES DG RD
Sbjct: 360 EERKKIEEEMTGSGSDLAAILEQLHATRATAKERQKILEKSIREEARRLKDESGGDGDRD 419
Query: 405 RRGLVDRDADGGWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVP 463
RRG VDRDA+ GWL GQRQLLDLD +AF QGG MAN+KC+LP GS R +KGYEE+HVP
Sbjct: 420 RRGPVDRDAESGWLKGQRQLLDLDGIAFHQGGFLMANKKCELPTGSYRHHSKGYEEVHVP 479
Query: 464 AMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAG 523
A+K L P E+L+KIS MP+WAQPAFKGMTQLNRVQS+VY++AL +A+N+LLCAPTGAG
Sbjct: 480 ALKAAALGPGEELVKISAMPDWAQPAFKGMTQLNRVQSKVYETALFTAENVLLCAPTGAG 539
Query: 524 KTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRE 583
KTNVA+LTILQQ+ALNRN DGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ YDVKV+E
Sbjct: 540 KTNVAMLTILQQIALNRNADGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQHYDVKVKE 599
Query: 584 LSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL 643
LSGDQ+LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLI+DEIHLLHDNRGPVL
Sbjct: 600 LSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIVDEIHLLHDNRGPVL 659
Query: 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ 703
ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV+L+KGLF+FDNSYRP PL+QQ
Sbjct: 660 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVDLKKGLFHFDNSYRPCPLAQQ 719
Query: 704 YIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTL 763
YIGI VKKPLQRFQLMND+CYEKV+AVAGKHQVLIFVHSRKETAKTARAIRDTAL NDTL
Sbjct: 720 YIGITVKKPLQRFQLMNDVCYEKVMAVAGKHQVLIFVHSRKETAKTARAIRDTALANDTL 779
Query: 764 GRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQV 823
GRFLKEDS SREIL SHT++VK+NDLKDLLPYGFAIHHAGM R DRQLVE+LF DGHVQV
Sbjct: 780 GRFLKEDSASREILHSHTELVKNNDLKDLLPYGFAIHHAGMARADRQLVEELFADGHVQV 839
Query: 824 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883
LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD+MQMLGRAGRPQYDSYGEGI
Sbjct: 840 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGI 899
Query: 884 IITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIR 943
IITGHSEL+YYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNA+EAC+WIGYTYLY+R
Sbjct: 900 IITGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREACSWIGYTYLYVR 959
Query: 944 MLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIA 1003
MLRNP LYGL+ + L DITL ERRADL+H+AA ILDRNNLVKYDRKSGYFQVTDLGRIA
Sbjct: 960 MLRNPTLYGLSHDALTRDITLEERRADLIHSAAIILDRNNLVKYDRKSGYFQVTDLGRIA 1019
Query: 1004 SYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV 1063
SYYYI+HGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIP+
Sbjct: 1020 SYYYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPI 1079
Query: 1064 KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLA 1123
KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRL+RALFEIVLKRGWAQL
Sbjct: 1080 KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLVRALFEIVLKRGWAQLT 1139
Query: 1124 EKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFP 1183
EKALNL KMV KRMWSVQTPLRQFN IPNEILMKLEKKD AWERYYDLS QELGELIR+P
Sbjct: 1140 EKALNLCKMVNKRMWSVQTPLRQFNAIPNEILMKLEKKDLAWERYYDLSSQELGELIRYP 1199
Query: 1184 KMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDN 1243
KMGRTLHKF+HQFPKL LAAHVQPITRTVL+VELTITPDF W+DKVHG+VEPFWVIVEDN
Sbjct: 1200 KMGRTLHKFIHQFPKLDLAAHVQPITRTVLRVELTITPDFQWEDKVHGFVEPFWVIVEDN 1259
Query: 1244 DGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRH 1303
DGEYILHHEYFM+KKQYI+E H+LNFTVPIYEPLPPQYFIRVVSD+WLGSQ+VLPVSFRH
Sbjct: 1260 DGEYILHHEYFMMKKQYIDEVHTLNFTVPIYEPLPPQYFIRVVSDRWLGSQSVLPVSFRH 1319
Query: 1304 LILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVA 1363
LILPEKYPPPTELLDLQPLPVTALRNP YEALYQ FKHFNPIQTQVFTVLYNTDDNVLVA
Sbjct: 1320 LILPEKYPPPTELLDLQPLPVTALRNPSYEALYQEFKHFNPIQTQVFTVLYNTDDNVLVA 1379
Query: 1364 APTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV 1423
APTGSGKTIC+EFAILRNHQK SE+ ++RAVYIAP+EALAKERYRDWE KFG+GLGMRVV
Sbjct: 1380 APTGSGKTICAEFAILRNHQKGSES-IVRAVYIAPIEALAKERYRDWERKFGRGLGMRVV 1438
Query: 1424 ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483
ELTGETA DLKLLE+GQ+IISTPEKWDALSRRWKQRK+VQQVSLFIIDELHLIGGQGGPV
Sbjct: 1439 ELTGETATDLKLLERGQVIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGGQGGPV 1498
Query: 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIH 1543
LEVIVSRMRYIASQ ENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIH
Sbjct: 1499 LEVIVSRMRYIASQGENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIH 1558
Query: 1544 IQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGD 1603
IQGVDI NFEARMQAMTKPT+TAIVQHAKN KPA+VFVP+RK+VRLTAVDL TYSS DG
Sbjct: 1559 IQGVDIANFEARMQAMTKPTYTAIVQHAKNRKPAIVFVPTRKHVRLTAVDLTTYSSADGG 1618
Query: 1604 QKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVC 1663
+ FLL EE+EPF+ IQEEML+ATLRHGVGYLHEGL DQEVVS LFEAG I+VC
Sbjct: 1619 ENPTFLLRSPEELEPFVGKIQEEMLRATLRHGVGYLHEGLTGMDQEVVSQLFEAGWIQVC 1678
Query: 1664 VMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723
VMSSS+CWGVPL+AHLVVVMGTQYYDG+ENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI
Sbjct: 1679 VMSSSLCWGVPLSAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1738
Query: 1724 LCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRL 1783
LCHAPRKEYYKKFLY+AFPVESHL H+LHDN NAEIV GVIENKQDAVDYLTWTFMYRRL
Sbjct: 1739 LCHAPRKEYYKKFLYEAFPVESHLQHYLHDNLNAEIVVGVIENKQDAVDYLTWTFMYRRL 1798
Query: 1784 TQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYI 1843
TQNPNYYNLQGVSHRHLSDHLSE VENT+SDLEASKC+ IE+DMDLSP N GMIASYYYI
Sbjct: 1799 TQNPNYYNLQGVSHRHLSDHLSESVENTLSDLEASKCVAIEDDMDLSPLNLGMIASYYYI 1858
Query: 1844 SYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKF 1903
SYTTIERFSSSLT KT+MKGLLE+LASASEYAQ+PIRPGEE+++RRLI+HQRFSFENPK
Sbjct: 1859 SYTTIERFSSSLTSKTKMKGLLEILASASEYAQIPIRPGEEDLIRRLINHQRFSFENPKC 1918
Query: 1904 TDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAME 1963
TDPH+KANALLQAHFSRQ VGGNL LDQ EVLLSA RLLQAMVDVISSNGWL+LALLAME
Sbjct: 1919 TDPHIKANALLQAHFSRQIVGGNLALDQREVLLSAGRLLQAMVDVISSNGWLNLALLAME 1978
Query: 1964 VSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSD 2023
VSQMVTQGMWERDSMLLQLPHF KDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSD
Sbjct: 1979 VSQMVTQGMWERDSMLLQLPHFTKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSD 2038
Query: 2024 VQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPK 2083
QLLDIARFCNRFPNID+++EV DSEN+RAG+DITLQV+LERDLEGRTEVG V + RYPK
Sbjct: 2039 SQLLDIARFCNRFPNIDITYEVLDSENLRAGDDITLQVMLERDLEGRTEVGSVDAPRYPK 2098
Query: 2084 AKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCD 2143
AKEEGWWLVVGDTK+NQLLAIKRV+LQRKS+VKL+FA PAEAG+K+YTLYFMCDSY+GCD
Sbjct: 2099 AKEEGWWLVVGDTKSNQLLAIKRVALQRKSKVKLEFAVPAEAGRKSYTLYFMCDSYLGCD 2158
Query: 2144 QEYAFTVDVKEA 2155
QEY+F+VDV +A
Sbjct: 2159 QEYSFSVDVMDA 2170
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459768|ref|XP_004147618.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3813 bits (9887), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1854/2171 (85%), Positives = 2007/2171 (92%), Gaps = 22/2171 (1%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
+LGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESL+GKIDP+SFGDRA+RG
Sbjct: 3 HLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLYGKIDPKSFGDRAYRG 62
Query: 64 RPPELEEKLKKSAKKKKERDPDADA-----------------AAASEGTYQPKTKETRAA 106
RPPEL+EKLKKS +KKKE DP A+ + EG Y PKTKETRAA
Sbjct: 63 RPPELDEKLKKSKRKKKELDPIAEPQPSRQGKRRRLQEESVLTSTEEGVYMPKTKETRAA 122
Query: 107 YEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQL 166
YEAMLSVIQQQLGGQPL+IVSGAADEILAVLKND+ KNPDKKKEIEKLLNPIPN+VFDQL
Sbjct: 123 YEAMLSVIQQQLGGQPLSIVSGAADEILAVLKNDSFKNPDKKKEIEKLLNPIPNNVFDQL 182
Query: 167 VSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEE 226
VSIG+LITDYQD DA G ANG LDDD+GVAVEFEEN++ EEESDLDMVQE++E+E
Sbjct: 183 VSIGRLITDYQDGNDATGPATANGDGALDDDIGVAVEFEENEE-EEESDLDMVQEDEEDE 241
Query: 227 EEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQ 286
++ VAEPN SGAMQM GGIDDDD + + GM+LNVQDIDAYWLQRKISQA++QQIDPQQ
Sbjct: 242 DD-VAEPNGSGAMQMDGGIDDDDLQ-ENDGGMNLNVQDIDAYWLQRKISQAYEQQIDPQQ 299
Query: 287 CQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEE 346
CQKLAEEVLKILAEGDDRE+E KLL HLQF+KFSL+KFLLRNRLKVVWCTRLAR++DQEE
Sbjct: 300 CQKLAEEVLKILAEGDDREIETKLLVHLQFEKFSLVKFLLRNRLKVVWCTRLARSEDQEE 359
Query: 347 RKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRR 406
RKKIEEEMM LGPDLAAIL+QLHATRATAKERQKNLEKSIREEARRLKDES D R RR
Sbjct: 360 RKKIEEEMMHLGPDLAAILEQLHATRATAKERQKNLEKSIREEARRLKDESGGDAERGRR 419
Query: 407 GLVDRDAD-GGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAM 465
V+RD D GG GQ QLLDLD++AFQQG L MAN KC LP+GS R KGYEEIHVP +
Sbjct: 420 DPVERDMDNGGLTGQSQLLDLDSIAFQQGSLLMANNKCVLPDGSYRHLGKGYEEIHVPKL 479
Query: 466 KHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKT 525
KP +EK +KI+ MP+WAQPAFKGMTQLNRVQS+VY++AL ADN+LLCAPTGAGKT
Sbjct: 480 NAKPFGSDEKFVKIASMPDWAQPAFKGMTQLNRVQSKVYETALFKADNVLLCAPTGAGKT 539
Query: 526 NVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELS 585
NVAVLTILQQ+AL+ N DGS+NH++YKIVYVAPMKALVAEVVGNLSNRLQ Y VKVRELS
Sbjct: 540 NVAVLTILQQIALHTNPDGSYNHNDYKIVYVAPMKALVAEVVGNLSNRLQDYGVKVRELS 599
Query: 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645
GDQTLTRQQI+ETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES
Sbjct: 600 GDQTLTRQQIDETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 659
Query: 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705
IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV+ +KGLF+FDNSYRPV L QQYI
Sbjct: 660 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVDPKKGLFHFDNSYRPVALYQQYI 719
Query: 706 GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGR 765
GI VKKPLQRFQLMNDLCYEKV++ AGKHQVLIFVHSRKET+KTARAIRD AL NDTL R
Sbjct: 720 GITVKKPLQRFQLMNDLCYEKVMSFAGKHQVLIFVHSRKETSKTARAIRDAALANDTLSR 779
Query: 766 FLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLV 825
FLKEDS SREIL +HTD+VKSN+LKDLLPYGFAIHHAGMTR DRQLVEDLF DGH+QVLV
Sbjct: 780 FLKEDSASREILHTHTDLVKSNELKDLLPYGFAIHHAGMTRVDRQLVEDLFADGHIQVLV 839
Query: 826 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
STATLAWGVNLPAH VIIKGTQIYNPEKGAWTELSPLD+MQMLGRAGRPQ+DS G GIII
Sbjct: 840 STATLAWGVNLPAHCVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQFDSEGTGIII 899
Query: 886 TGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRML 945
TGHSEL+YYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNA+EA NW+GYTYLY+RML
Sbjct: 900 TGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREASNWLGYTYLYVRML 959
Query: 946 RNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASY 1005
RNP LYGLA + DITL ERRADL+H+AATILD+NNLVKYDRKSGYFQVTDLGRIASY
Sbjct: 960 RNPTLYGLAADAPTRDITLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASY 1019
Query: 1006 YYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE 1065
YYI+HGTISTYNEHLKP MGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL+RVPIP+KE
Sbjct: 1020 YYITHGTISTYNEHLKPMMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLERVPIPIKE 1079
Query: 1066 SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEK 1125
SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRL+RALFEIVLKRGWAQLAEK
Sbjct: 1080 SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAQLAEK 1139
Query: 1126 ALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKM 1185
ALNL KMV+KRMWSVQTPLRQF+GI N+ILMKLEKKD AWERYYDLS QELGELIR PKM
Sbjct: 1140 ALNLCKMVSKRMWSVQTPLRQFHGISNDILMKLEKKDLAWERYYDLSSQELGELIRAPKM 1199
Query: 1186 GRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDG 1245
GRTLHKF+HQFPKL LAAHVQPITRTVL+VELTITPDF W+DKVHGYVE FWV+VEDNDG
Sbjct: 1200 GRTLHKFIHQFPKLNLAAHVQPITRTVLRVELTITPDFQWEDKVHGYVESFWVLVEDNDG 1259
Query: 1246 EYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLI 1305
E+I HHE+F+LKKQYI+EDH+LNFTVPI EPLPPQYFIRVVSD+WLGSQT+LPVSFRHLI
Sbjct: 1260 EFIHHHEHFLLKKQYIDEDHTLNFTVPICEPLPPQYFIRVVSDRWLGSQTILPVSFRHLI 1319
Query: 1306 LPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAP 1365
LPEK+PPPTELLDLQPLPVTALRNP YEALYQ FKHFNP+QTQVFTVLYNTDDNVLVAAP
Sbjct: 1320 LPEKFPPPTELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNTDDNVLVAAP 1379
Query: 1366 TGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVEL 1425
TGSGKTIC+EFAILRN+QK + V+RAVYIAP+E+LAKERYRDW+ KFG+GLG+RVVEL
Sbjct: 1380 TGSGKTICAEFAILRNYQKGQDN-VLRAVYIAPIESLAKERYRDWDKKFGKGLGIRVVEL 1438
Query: 1426 TGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485
TGETA DLKLLE+GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE
Sbjct: 1439 TGETATDLKLLERGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1498
Query: 1486 VIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQ 1545
VIVSRMRYIASQ+ENKIRIVALSTSLANAKD+G+WIGATSHGLFNFPPGVRPVPLEIHIQ
Sbjct: 1499 VIVSRMRYIASQIENKIRIVALSTSLANAKDIGDWIGATSHGLFNFPPGVRPVPLEIHIQ 1558
Query: 1546 GVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQK 1605
GVDI NFEARMQAMTKPT+TAIVQHAKN KPA+VFVP+RK+VRLTAVD+MTYSS D +K
Sbjct: 1559 GVDIANFEARMQAMTKPTYTAIVQHAKNGKPAIVFVPTRKHVRLTAVDIMTYSSADNGEK 1618
Query: 1606 SAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVM 1665
FLL E++EPF+D I +EMLKA LRHGVGYLHEGL+ DQEVV+ LFEAG I+VCV+
Sbjct: 1619 LPFLLRSLEDIEPFVDKINDEMLKAILRHGVGYLHEGLSSLDQEVVTQLFEAGWIQVCVI 1678
Query: 1666 SSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725
SSSMCWGVPL+AHLVVVMGTQYYDG+ENAHTDYPVTDL+QMMGHASRPLLDNSGKCVILC
Sbjct: 1679 SSSMCWGVPLSAHLVVVMGTQYYDGRENAHTDYPVTDLMQMMGHASRPLLDNSGKCVILC 1738
Query: 1726 HAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQ 1785
HAPRKEYYKKFLY+AFPVESHLHHFLHDN NAEIVAG+IENKQDAVDY+TWT MYRRLTQ
Sbjct: 1739 HAPRKEYYKKFLYEAFPVESHLHHFLHDNINAEIVAGIIENKQDAVDYITWTLMYRRLTQ 1798
Query: 1786 NPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISY 1845
NPNYYNLQGVSHRHLSDHLSELVE+T+SDLEASKCI IE+DMDLSPSN GMIASYYYISY
Sbjct: 1799 NPNYYNLQGVSHRHLSDHLSELVEHTLSDLEASKCISIEDDMDLSPSNLGMIASYYYISY 1858
Query: 1846 TTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTD 1905
TTIERFSSSLT KT+MKGLLE+LASASEYA LPIRPGEEE++RRLI+HQRFSFENPK TD
Sbjct: 1859 TTIERFSSSLTAKTKMKGLLEILASASEYALLPIRPGEEELIRRLINHQRFSFENPKCTD 1918
Query: 1906 PHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVS 1965
PHVKANALLQA+FSRQ VGGNL LDQ EV++SASRLLQAMVDVISSNGWLSLALLAMEVS
Sbjct: 1919 PHVKANALLQAYFSRQSVGGNLALDQREVVISASRLLQAMVDVISSNGWLSLALLAMEVS 1978
Query: 1966 QMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQ 2025
QMVTQG+WERDSMLLQLPHF K+LAKRCQEN GK+IET+FDLVEMED+ER ELLQMSD Q
Sbjct: 1979 QMVTQGLWERDSMLLQLPHFTKELAKRCQENSGKNIETIFDLVEMEDNERHELLQMSDSQ 2038
Query: 2026 LLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAK 2085
LLDIARFCNRFPNIDM++EV D ENV AGE++TLQV LERDL+GRTEVGPV + RYPKAK
Sbjct: 2039 LLDIARFCNRFPNIDMAYEVLDGENVAAGENVTLQVTLERDLDGRTEVGPVDALRYPKAK 2098
Query: 2086 EEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQE 2145
EEGWWLVVGDTK+NQLLAIKRVSLQRK++VKLDF APA+ GKK+YTLYFMCDSY+GCDQE
Sbjct: 2099 EEGWWLVVGDTKSNQLLAIKRVSLQRKAKVKLDFTAPADTGKKSYTLYFMCDSYLGCDQE 2158
Query: 2146 YAFTVDVKEAG 2156
Y+FTVDVK+A
Sbjct: 2159 YSFTVDVKDAA 2169
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224136151|ref|XP_002322252.1| predicted protein [Populus trichocarpa] gi|222869248|gb|EEF06379.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3811 bits (9883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1860/2175 (85%), Positives = 2002/2175 (92%), Gaps = 51/2175 (2%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
+LGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPE+LWG+IDPRSFGDRA+RG
Sbjct: 3 HLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPETLWGRIDPRSFGDRAYRG 62
Query: 64 RPPELEEKLKKSAKKKKERDPDADAA-----------------AASEGTYQPKTKETRAA 106
RP EL+EK+ K+ +KKKERD ++A + EG YQPKTKETRAA
Sbjct: 63 RPAELDEKINKAKRKKKERDAVSEAGPTRQAKRRRLREESVLTSTEEGVYQPKTKETRAA 122
Query: 107 YEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQL 166
YEAMLSVIQQQLGGQPLNIVS AADEILAVLKN++V+ DK+KEIEKLLNPIPN++F+Q+
Sbjct: 123 YEAMLSVIQQQLGGQPLNIVSAAADEILAVLKNESVRTQDKRKEIEKLLNPIPNNMFEQV 182
Query: 167 VSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEE 226
VSIG+LITDYQDAGD AG ANG + LDD +GVAVEF+E+++DEEE + E+EEE
Sbjct: 183 VSIGRLITDYQDAGDGAGASVANGDDALDDGVGVAVEFDEDNEDEEEDSDLDMVPEEEEE 242
Query: 227 EEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQ 286
E+DV EP SGAMQMGGGIDDD E G+ANEG++LNVQDIDAYWLQRKIS A++QQIDPQQ
Sbjct: 243 EDDVVEPGGSGAMQMGGGIDDD-EMGEANEGLNLNVQDIDAYWLQRKISLAYEQQIDPQQ 301
Query: 287 CQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEE 346
CQKLAEEVLKILAEGDDREVE KLL HLQFDKFSLIKFLLRNRLK+VWCTRLARA+DQEE
Sbjct: 302 CQKLAEEVLKILAEGDDREVETKLLVHLQFDKFSLIKFLLRNRLKIVWCTRLARAKDQEE 361
Query: 347 RKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRR 406
RK+IEEEMMGLGPDLA IL+QLHATRATAKERQKNLEKSIREEARRLKDE+ DG RDRR
Sbjct: 362 RKQIEEEMMGLGPDLAGILEQLHATRATAKERQKNLEKSIREEARRLKDETGGDGDRDRR 421
Query: 407 GLVDRDADGGWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAM 465
GLVDRDA+ GW+ GQ Q+LDLD++AF+QGGL MAN+KCDLP GS + KGYEE+HVPA+
Sbjct: 422 GLVDRDAESGWVKGQPQMLDLDSIAFEQGGLLMANKKCDLPVGSFKHQKKGYEEVHVPAL 481
Query: 466 KHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKT 525
K KP+ P+E+ +KISEMP+WAQPAFKGM QLNRVQS+VY++AL ADN+LLCAPTGAGKT
Sbjct: 482 KQKPIPPDERFVKISEMPDWAQPAFKGMQQLNRVQSKVYETALFKADNVLLCAPTGAGKT 541
Query: 526 NVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELS 585
NVAVLTILQQ+ALNRN DGSFN++NYKIVYVAPMKALVAEVVGNLSNRLQ Y V+
Sbjct: 542 NVAVLTILQQIALNRNPDGSFNNNNYKIVYVAPMKALVAEVVGNLSNRLQEYGVQ----- 596
Query: 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645
WDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES
Sbjct: 597 ----------------------WDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 634
Query: 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705
IVARTVRQIETTKEHIRLVGLSATLPN+EDVALFLRV+L+KGLF+FDNSYRPVPLSQQYI
Sbjct: 635 IVARTVRQIETTKEHIRLVGLSATLPNFEDVALFLRVDLDKGLFHFDNSYRPVPLSQQYI 694
Query: 706 GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGR 765
GI +KKPLQRFQLMND+CYEKV+ VAGKHQVLIFVHSRKETAKTARAIRDTAL NDTL R
Sbjct: 695 GINIKKPLQRFQLMNDICYEKVMDVAGKHQVLIFVHSRKETAKTARAIRDTALANDTLSR 754
Query: 766 FLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLV 825
FL+EDS SREILQ+HT++VKSNDLKDLLPYGFA+HHAGMTRGDRQLVEDLF DGHVQVLV
Sbjct: 755 FLREDSASREILQTHTELVKSNDLKDLLPYGFAVHHAGMTRGDRQLVEDLFADGHVQVLV 814
Query: 826 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD+MQMLGRAGRPQYDSYGEGIII
Sbjct: 815 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGIII 874
Query: 886 TGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRML 945
TGHSEL+YYLSLMNQQLPIESQF+SKLADQLNAEIVLGTVQNA+EAC+W+GYTYLYIRML
Sbjct: 875 TGHSELQYYLSLMNQQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRML 934
Query: 946 RNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASY 1005
RNP LYGLAP+VL DITL ERRADL+H+AA ILD+NNLVKYDRKSGYFQ TDLGRIASY
Sbjct: 935 RNPTLYGLAPDVLTRDITLEERRADLIHSAAAILDKNNLVKYDRKSGYFQGTDLGRIASY 994
Query: 1006 YYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE 1065
YYI+HGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIP+KE
Sbjct: 995 YYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKE 1054
Query: 1066 SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEK 1125
SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRL+RALFEIVLKRGWAQLAEK
Sbjct: 1055 SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAQLAEK 1114
Query: 1126 ALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKM 1185
ALNL KMV KRMWSVQTPLRQF+GIPNEILMKLEKKD +W+RYYDL PQE+GELIRFPKM
Sbjct: 1115 ALNLCKMVNKRMWSVQTPLRQFHGIPNEILMKLEKKDLSWDRYYDLKPQEIGELIRFPKM 1174
Query: 1186 GRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDG 1245
GRTL+KF+HQFPKL LAAHVQPITRTVL+VELTIT DF W+D VHGYVEPFWVIVEDNDG
Sbjct: 1175 GRTLYKFIHQFPKLNLAAHVQPITRTVLRVELTITADFQWEDNVHGYVEPFWVIVEDNDG 1234
Query: 1246 EYILHHEYFMLKKQYIEE----DHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF 1301
+YILHHEYFMLKKQY++E D +LNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF
Sbjct: 1235 DYILHHEYFMLKKQYVDEHQVVDLTLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF 1294
Query: 1302 RHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVL 1361
RHLILPEKYPPPTELLDLQPLPVTALRNP YEALYQ FKHFNP+QTQVFTVLYNTDDNVL
Sbjct: 1295 RHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNTDDNVL 1354
Query: 1362 VAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMR 1421
VAAPTGSGKTIC+EFAILRNHQK E+ VMRAVYIAPLEA+A+ERYRDWE KFG+GLGMR
Sbjct: 1355 VAAPTGSGKTICAEFAILRNHQKGPES-VMRAVYIAPLEAIARERYRDWERKFGRGLGMR 1413
Query: 1422 VVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481
VVELTGETA DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG
Sbjct: 1414 VVELTGETATDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1473
Query: 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLE 1541
PVLEVIVSRMRYIASQ+ENKIRIVALS+SLANAKDLGEWIGATSHGLFNFPPGVRPVPLE
Sbjct: 1474 PVLEVIVSRMRYIASQIENKIRIVALSSSLANAKDLGEWIGATSHGLFNFPPGVRPVPLE 1533
Query: 1542 IHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMD 1601
IHIQGVDI NFEARMQAMTKPT+T+IVQHAKN KPA+VFVP+RK+VRL AVDLMTYSSMD
Sbjct: 1534 IHIQGVDIANFEARMQAMTKPTYTSIVQHAKNGKPAIVFVPTRKHVRLAAVDLMTYSSMD 1593
Query: 1602 GDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIK 1661
G +K FLL EE+EPFI IQEEML+ATL HG+GYLHEGL+ DQEVVS LFEAG I+
Sbjct: 1594 GGEKPPFLLRSIEELEPFIGKIQEEMLRATLHHGIGYLHEGLSSLDQEVVSQLFEAGWIQ 1653
Query: 1662 VCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1721
VCVMSSSMCWGVPL+AHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC
Sbjct: 1654 VCVMSSSMCWGVPLSAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1713
Query: 1722 VILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYR 1781
VI CHAPRKEYYKKFLY+AFPVESHLHHFLHDNFNAE+VAGVIENKQDAVDYLTWTF YR
Sbjct: 1714 VIFCHAPRKEYYKKFLYEAFPVESHLHHFLHDNFNAEVVAGVIENKQDAVDYLTWTFTYR 1773
Query: 1782 RLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYY 1841
RLTQNPNYYNLQGVSHRHLSDHLSELVENT++DLE SKC+ IEEDMDLSP N GMIASYY
Sbjct: 1774 RLTQNPNYYNLQGVSHRHLSDHLSELVENTLTDLERSKCVAIEEDMDLSPLNLGMIASYY 1833
Query: 1842 YISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENP 1901
YISYTTIERFSSSLTPKT+MKGLLE+L+SASEYAQLPIRPGEEEV+RRLI+HQRFSFENP
Sbjct: 1834 YISYTTIERFSSSLTPKTKMKGLLEILSSASEYAQLPIRPGEEEVLRRLINHQRFSFENP 1893
Query: 1902 KFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLA 1961
++ DPHVKAN LLQAHFSRQ VGGNL LDQ EVLLS SRLLQAMVDVISSNGWLSLALLA
Sbjct: 1894 RYADPHVKANVLLQAHFSRQSVGGNLALDQREVLLSGSRLLQAMVDVISSNGWLSLALLA 1953
Query: 1962 MEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQM 2021
MEVSQMVTQGMWERDSMLLQLPHF KD+AKRCQENPGKSIETVFDLVEMEDDERRELLQM
Sbjct: 1954 MEVSQMVTQGMWERDSMLLQLPHFTKDMAKRCQENPGKSIETVFDLVEMEDDERRELLQM 2013
Query: 2022 SDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRY 2081
SD QLLDI RFCNRFPNIDMS+EV D +NVRAGEDITL V LERDLEGRTEVGPV S RY
Sbjct: 2014 SDSQLLDIVRFCNRFPNIDMSYEVMDGDNVRAGEDITLLVTLERDLEGRTEVGPVDSPRY 2073
Query: 2082 PKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMG 2141
PKAKEEGWWLVVGDTK+NQLLAIKRVSLQRKS+VKL+FAAPA+ G+K+YTLYFMCDSY+G
Sbjct: 2074 PKAKEEGWWLVVGDTKSNQLLAIKRVSLQRKSKVKLEFAAPADTGRKSYTLYFMCDSYLG 2133
Query: 2142 CDQEYAFTVDVKEAG 2156
CDQEY F+VDV EA
Sbjct: 2134 CDQEYNFSVDVGEAA 2148
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449517355|ref|XP_004165711.1| PREDICTED: LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3809 bits (9879), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1852/2171 (85%), Positives = 2005/2171 (92%), Gaps = 22/2171 (1%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
+LGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESL+GKIDP+SFGDRA+RG
Sbjct: 3 HLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLYGKIDPKSFGDRAYRG 62
Query: 64 RPPELEEKLKKSAKKKKERDPDADA-----------------AAASEGTYQPKTKETRAA 106
RPPEL+EKLKKS +KKKE DP A+ + EG Y PKTKETRAA
Sbjct: 63 RPPELDEKLKKSKRKKKELDPIAEPQPSRQGKRRRLQEESVLTSTEEGVYMPKTKETRAA 122
Query: 107 YEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQL 166
YEAMLSVIQQQLGGQPL+IVSGAADEILAVLKND+ KNPDKKKEIEKLLNPIPN+VFDQL
Sbjct: 123 YEAMLSVIQQQLGGQPLSIVSGAADEILAVLKNDSFKNPDKKKEIEKLLNPIPNNVFDQL 182
Query: 167 VSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEE 226
VSIG+LITDYQD DA G ANG LDDD+GVAVEFEEN++ EEESDLDMVQE++E+E
Sbjct: 183 VSIGRLITDYQDGNDATGPATANGDGALDDDIGVAVEFEENEE-EEESDLDMVQEDEEDE 241
Query: 227 EEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQ 286
++ VAEPN SGAMQM GGIDDDD + + GM+LNVQDIDAYWLQRKISQA++QQIDPQQ
Sbjct: 242 DD-VAEPNGSGAMQMDGGIDDDDLQ-ENDGGMNLNVQDIDAYWLQRKISQAYEQQIDPQQ 299
Query: 287 CQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEE 346
CQKLAEEVLKILAEGDDRE+E KLL HLQF+KFSL+KFLLRNRLKVVWCTRLAR++DQEE
Sbjct: 300 CQKLAEEVLKILAEGDDREIETKLLVHLQFEKFSLVKFLLRNRLKVVWCTRLARSEDQEE 359
Query: 347 RKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRR 406
R KIEEEMM LGPDLAAIL+QLHATRATAKERQKNLEKSIREEARRLKDES D R RR
Sbjct: 360 RXKIEEEMMHLGPDLAAILEQLHATRATAKERQKNLEKSIREEARRLKDESGGDAERGRR 419
Query: 407 GLVDRDAD-GGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAM 465
V+RD D GG GQ QLLDLD++AFQQG L MAN KC LP+GS R KGYEEIHVP +
Sbjct: 420 DPVERDMDNGGLTGQSQLLDLDSIAFQQGSLLMANNKCVLPDGSYRHLGKGYEEIHVPKL 479
Query: 466 KHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKT 525
KP +EK +KI+ MP+WAQPAFKGMTQLNRVQS+VY++AL ADN+LLCAPTGAGKT
Sbjct: 480 NAKPFGSDEKFVKIASMPDWAQPAFKGMTQLNRVQSKVYETALFKADNVLLCAPTGAGKT 539
Query: 526 NVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELS 585
NVAVLTILQQ+AL+ N DGS+NH++YKIVYVAPMKALVAEVVGNLSNRLQ Y VKVRELS
Sbjct: 540 NVAVLTILQQIALHTNPDGSYNHNDYKIVYVAPMKALVAEVVGNLSNRLQDYGVKVRELS 599
Query: 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645
GDQTLTRQQI+ETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES
Sbjct: 600 GDQTLTRQQIDETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 659
Query: 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705
IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV+ +KGLF+FDNSYRPV L QQYI
Sbjct: 660 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVDPKKGLFHFDNSYRPVALYQQYI 719
Query: 706 GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGR 765
GI VKKPLQRFQLMNDLCYEKV++ AGKHQVLIFVHSRKET+KTARAIRD AL NDTL R
Sbjct: 720 GITVKKPLQRFQLMNDLCYEKVMSFAGKHQVLIFVHSRKETSKTARAIRDAALANDTLSR 779
Query: 766 FLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLV 825
FLKEDS SREIL +HTD+VKSN+LKDLLPYGFAIHHAGMTR DRQLVEDLF DGH+QVLV
Sbjct: 780 FLKEDSASREILHTHTDLVKSNELKDLLPYGFAIHHAGMTRVDRQLVEDLFADGHIQVLV 839
Query: 826 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
STATLAWGVNLPAH VIIKGTQIYNPEKGAWTELSPLD+MQMLGRAGRPQ+DS G GIII
Sbjct: 840 STATLAWGVNLPAHCVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQFDSEGTGIII 899
Query: 886 TGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRML 945
TGHSEL+YYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNA+EA NW+GYTYLY+RML
Sbjct: 900 TGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREASNWLGYTYLYVRML 959
Query: 946 RNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASY 1005
RNP LYGLA + DITL ERRADL+H+AATILD+NNLVKYDRKSGYFQVTDLGRIASY
Sbjct: 960 RNPTLYGLAADAPTRDITLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASY 1019
Query: 1006 YYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE 1065
YYI+HGTISTYNEHLKP MGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL+RVPIP+KE
Sbjct: 1020 YYITHGTISTYNEHLKPMMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLERVPIPIKE 1079
Query: 1066 SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEK 1125
SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRL+RALFEIVLKRGWAQLAEK
Sbjct: 1080 SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAQLAEK 1139
Query: 1126 ALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKM 1185
ALNL KMV+KRMWSVQTPLRQF+GI N+ILMKLEKKD AWERYYDLS QELGELIR PKM
Sbjct: 1140 ALNLCKMVSKRMWSVQTPLRQFHGISNDILMKLEKKDLAWERYYDLSSQELGELIRAPKM 1199
Query: 1186 GRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDG 1245
GRTLHKF+HQFPKL LAAHVQPITRTVL+VELTITPDF W+DKVHGYVE FWV+VEDNDG
Sbjct: 1200 GRTLHKFIHQFPKLNLAAHVQPITRTVLRVELTITPDFQWEDKVHGYVESFWVLVEDNDG 1259
Query: 1246 EYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLI 1305
E+I HHE+F+LKKQYI+EDH+LNFTVPI EPLPPQYFIRVVSD+WLGSQT+LPVSFRHLI
Sbjct: 1260 EFIHHHEHFLLKKQYIDEDHTLNFTVPICEPLPPQYFIRVVSDRWLGSQTILPVSFRHLI 1319
Query: 1306 LPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAP 1365
LPEK+PPP ELLDLQPLPVTALRNP YEALYQ FKHFNP+QTQVFTVLYNTDDNVLVAAP
Sbjct: 1320 LPEKFPPPMELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNTDDNVLVAAP 1379
Query: 1366 TGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVEL 1425
TGSGKTIC+EFAILRN+QK + V+RAVYIAP+E+LAKERYRDW+ KFG+GLG+RVVEL
Sbjct: 1380 TGSGKTICAEFAILRNYQKGQDN-VLRAVYIAPIESLAKERYRDWDKKFGKGLGIRVVEL 1438
Query: 1426 TGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485
TGETA DLKLLE+GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE
Sbjct: 1439 TGETATDLKLLERGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1498
Query: 1486 VIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQ 1545
VIVSRMRYIASQ+ENKIRIVALSTSLANAKD+G+WIGATSHGLFNFPPGVRPVPLEIHIQ
Sbjct: 1499 VIVSRMRYIASQIENKIRIVALSTSLANAKDIGDWIGATSHGLFNFPPGVRPVPLEIHIQ 1558
Query: 1546 GVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQK 1605
GVDI NFEARMQAMTKPT+TAIVQHAKN KPA+VFVP+RK+VRLTAVD+MTYSS D +K
Sbjct: 1559 GVDIANFEARMQAMTKPTYTAIVQHAKNGKPAIVFVPTRKHVRLTAVDIMTYSSADNGEK 1618
Query: 1606 SAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVM 1665
FLL E++EPF+D I +EMLKA LRHGVGYLHEGL+ DQEVV+ LFEAG I+VCV+
Sbjct: 1619 LPFLLRSLEDIEPFVDKINDEMLKAILRHGVGYLHEGLSSLDQEVVTQLFEAGWIQVCVI 1678
Query: 1666 SSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725
SSSMCWGVPL+AHLVVVMGTQYYDG+ENAHTDYPVTDL+QMMGHASRPLLDNSGKCVILC
Sbjct: 1679 SSSMCWGVPLSAHLVVVMGTQYYDGRENAHTDYPVTDLMQMMGHASRPLLDNSGKCVILC 1738
Query: 1726 HAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQ 1785
HAPRKEYYKKFLY+AFPVESHLHHFLHDN NAEIVAG+IENKQDAVDY+TWT MYRRLTQ
Sbjct: 1739 HAPRKEYYKKFLYEAFPVESHLHHFLHDNINAEIVAGIIENKQDAVDYITWTLMYRRLTQ 1798
Query: 1786 NPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISY 1845
NPNYYNLQGVSHRHLSDHLSELVE+T+SDLEASKCI IE+DMDLSPSN GMIASYYYISY
Sbjct: 1799 NPNYYNLQGVSHRHLSDHLSELVEHTLSDLEASKCISIEDDMDLSPSNLGMIASYYYISY 1858
Query: 1846 TTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTD 1905
TTIERFSSSLT KT+MKGLLE+LASASEYA LPIRPGEEE++RRLI+HQRFSFENPK TD
Sbjct: 1859 TTIERFSSSLTAKTKMKGLLEILASASEYALLPIRPGEEELIRRLINHQRFSFENPKCTD 1918
Query: 1906 PHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVS 1965
PHVKANALLQA+FSRQ VGGNL LDQ EV++SASRLLQAMVDVISSNGWLSLALLAMEVS
Sbjct: 1919 PHVKANALLQAYFSRQSVGGNLALDQREVVISASRLLQAMVDVISSNGWLSLALLAMEVS 1978
Query: 1966 QMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQ 2025
QMVTQG+WERDSMLLQLPHF K+LAKRCQEN GK+IET+FDLVEMED+ER ELLQMSD Q
Sbjct: 1979 QMVTQGLWERDSMLLQLPHFTKELAKRCQENSGKNIETIFDLVEMEDNERHELLQMSDSQ 2038
Query: 2026 LLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAK 2085
LLDIARFCNRFPNIDM++EV D ENV AGE++TLQV LERDL+GRTEVGPV + RYPKAK
Sbjct: 2039 LLDIARFCNRFPNIDMAYEVLDGENVAAGENVTLQVTLERDLDGRTEVGPVDALRYPKAK 2098
Query: 2086 EEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQE 2145
EEGWWLVVGDTK+NQLLAIKRVSLQRK++VKLDF APA+ GKK+YTLYFMCDSY+GCDQE
Sbjct: 2099 EEGWWLVVGDTKSNQLLAIKRVSLQRKAKVKLDFTAPADTGKKSYTLYFMCDSYLGCDQE 2158
Query: 2146 YAFTVDVKEAG 2156
Y+FTVDVK+A
Sbjct: 2159 YSFTVDVKDAA 2169
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356556951|ref|XP_003546783.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3803 bits (9861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1859/2180 (85%), Positives = 2018/2180 (92%), Gaps = 34/2180 (1%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
+LGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDP+SFGDRA+RG
Sbjct: 3 HLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPKSFGDRAYRG 62
Query: 64 RPPELEEKLKKSA-------------------KKKKERDPDADAAAASEGTYQPKTKETR 104
RPPEL+EKL+K+ K++ D+ +A+ +G YQPKTKETR
Sbjct: 63 RPPELDEKLEKAKNKKKKKDRDAAADDAAAVPSKRRRVQHDSVLSASDDGVYQPKTKETR 122
Query: 105 AAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFD 164
AAYEAMLSVIQ QLGGQPL+IVS AADEILAVLKND VKNPDKKK+IEKLLNPIP HVFD
Sbjct: 123 AAYEAMLSVIQNQLGGQPLSIVSAAADEILAVLKNDVVKNPDKKKDIEKLLNPIPGHVFD 182
Query: 165 QLVSIGKLITDYQDAGDAA-GNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEED 223
QLVSIGKLITD+Q+A D G+ A +G E LDDD+GVAVEFEEN+DD+EESDLD+VQ+E+
Sbjct: 183 QLVSIGKLITDFQEAVDVPNGSSAMDGEEGLDDDVGVAVEFEENEDDDEESDLDIVQDEE 242
Query: 224 EEEEEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQID 283
EE+E+ V EPN+SGAMQMGG D+D E G NEGM LNVQDIDAYWLQRKISQAF+QQID
Sbjct: 243 EEDED-VTEPNSSGAMQMGGIDDEDMEEG--NEGMGLNVQDIDAYWLQRKISQAFEQQID 299
Query: 284 PQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQD 343
PQ CQKLAEEVLKILAEGDDREVENKLL+HL+FDKFSLIKFLLRNRLK+VWCTRLARAQD
Sbjct: 300 PQHCQKLAEEVLKILAEGDDREVENKLLFHLEFDKFSLIKFLLRNRLKIVWCTRLARAQD 359
Query: 344 QEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGG- 402
QEER++IEEEM G +L IL+QLHATRA+AKERQKNLEKSIREEARRLKD++ DG
Sbjct: 360 QEERERIEEEMKG--TELQPILEQLHATRASAKERQKNLEKSIREEARRLKDDTGGDGDK 417
Query: 403 ----RDRRGLVDRDADGGWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGY 457
R RR + DRD + GWL GQRQ+LDLD++AF QGG FMA +KCDLP+GS R +KGY
Sbjct: 418 ESRDRSRRVVADRDGESGWLKGQRQMLDLDSIAFAQGGFFMAKKKCDLPDGSYRHLSKGY 477
Query: 458 EEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLC 517
EEIHVPA+K KPLDPNEKL+KIS MP+WAQPAFKGMTQLNRVQS+VY++AL DN+LLC
Sbjct: 478 EEIHVPALKAKPLDPNEKLVKISSMPDWAQPAFKGMTQLNRVQSKVYETALFQPDNLLLC 537
Query: 518 APTGAGKTNVAVLTILQQLALNRN-DDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM 576
APTGAGKTNVAVLTILQQ+A +RN DGS +HS YKIVYVAPMKALVAEVVGNLSNRLQ
Sbjct: 538 APTGAGKTNVAVLTILQQIARHRNPKDGSIDHSAYKIVYVAPMKALVAEVVGNLSNRLQD 597
Query: 577 YDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636
YDVKVRELSGDQ+LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH
Sbjct: 598 YDVKVRELSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 657
Query: 637 DNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR 696
DNRGPVLESIVARTVRQIETTK++IRLVGLSATLPNYEDVALFLRV+L+KGLFYFDNSYR
Sbjct: 658 DNRGPVLESIVARTVRQIETTKDYIRLVGLSATLPNYEDVALFLRVDLKKGLFYFDNSYR 717
Query: 697 PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDT 756
PVPLSQQY+GI VKKPLQRFQLMND+CYEKV+AVAGKHQVLIFVHSRKETAKTARAIRDT
Sbjct: 718 PVPLSQQYVGITVKKPLQRFQLMNDICYEKVMAVAGKHQVLIFVHSRKETAKTARAIRDT 777
Query: 757 ALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816
AL NDTLGRFLKEDS SREIL +HTD+VKSNDLKDLLPYGFAIHHAGMTR DRQLVEDLF
Sbjct: 778 ALANDTLGRFLKEDSASREILHTHTDLVKSNDLKDLLPYGFAIHHAGMTRTDRQLVEDLF 837
Query: 817 GDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876
DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD+MQMLGRAGRPQY
Sbjct: 838 ADGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQY 897
Query: 877 DSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIG 936
DSYGEGII+TGHSEL+YYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNA+EACNWIG
Sbjct: 898 DSYGEGIIVTGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREACNWIG 957
Query: 937 YTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQV 996
YTYLY+RMLRNP+LYG+AP+VL DITL ERRADL+HTAATILDRNNLVKYDRKSGYFQV
Sbjct: 958 YTYLYVRMLRNPSLYGIAPDVLTRDITLEERRADLIHTAATILDRNNLVKYDRKSGYFQV 1017
Query: 997 TDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL 1056
TDLGRIASYYYI+HG+ISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL
Sbjct: 1018 TDLGRIASYYYITHGSISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL 1077
Query: 1057 DRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLK 1116
DRVPIP+KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLK
Sbjct: 1078 DRVPIPIKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLK 1137
Query: 1117 RGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQEL 1176
RGWAQLAEKALNL KMVTKRMWSVQTPLRQFNGIP+++L KLEKKD AWERYYDLS QE+
Sbjct: 1138 RGWAQLAEKALNLCKMVTKRMWSVQTPLRQFNGIPSDLLTKLEKKDLAWERYYDLSSQEI 1197
Query: 1177 GELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPF 1236
GELIR PKMGRTLHKF+HQFPKL LAAHVQPITRTVL+VELTITPDF WDD++HGYVEPF
Sbjct: 1198 GELIRAPKMGRTLHKFIHQFPKLNLAAHVQPITRTVLRVELTITPDFAWDDRIHGYVEPF 1257
Query: 1237 WVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTV 1296
WVIVEDNDGEYILHHEYFMLKKQYI+EDH+LNFTVPIYEPLPPQYFIRVVSD+WLGSQTV
Sbjct: 1258 WVIVEDNDGEYILHHEYFMLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDRWLGSQTV 1317
Query: 1297 LPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNT 1356
LPVSFRHLILPEKYPPPTELLDLQPLPVTALRNP YE+LY+ FKHFNP+QTQVFTVLYN+
Sbjct: 1318 LPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPSYESLYKDFKHFNPVQTQVFTVLYNS 1377
Query: 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416
DDNVLVAAPTGSGKTIC+EFAILRNHQK ++ VMR VY+AP+E+LAKERYRDWE KFG
Sbjct: 1378 DDNVLVAAPTGSGKTICAEFAILRNHQKWPDS-VMRVVYVAPIESLAKERYRDWEKKFGG 1436
Query: 1417 GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476
GL +RVVELTGETA DLKLLEKGQIIISTPEKWDALSRRWKQRK+VQQVSLFIIDELHLI
Sbjct: 1437 GLKLRVVELTGETATDLKLLEKGQIIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLI 1496
Query: 1477 GGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVR 1536
GGQGGP+LEV+VSRMRYIASQVENKIR+VALSTSLANAKDLGEWIGATSHGLFNFPPGVR
Sbjct: 1497 GGQGGPILEVVVSRMRYIASQVENKIRVVALSTSLANAKDLGEWIGATSHGLFNFPPGVR 1556
Query: 1537 PVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMT 1596
PVPLEIHIQG+DI NFEARMQAMTKPT+TAIVQHAKN KPALVFVP+RK+VRLTAVDL+T
Sbjct: 1557 PVPLEIHIQGIDIANFEARMQAMTKPTYTAIVQHAKNGKPALVFVPTRKHVRLTAVDLIT 1616
Query: 1597 YSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFE 1656
YS D +K FLL AEE+EPF+D I +EMLK TLR GVGYLHEGLN D+++V+ LFE
Sbjct: 1617 YSGADSGEK-PFLLRSAEELEPFLDKITDEMLKVTLREGVGYLHEGLNSLDRDIVTQLFE 1675
Query: 1657 AGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD 1716
AG I+VCV++SSMCWGV L+AHLVVVMGTQYYDG+ENA TDYPVTDLLQMMGHASRPL+D
Sbjct: 1676 AGWIQVCVLNSSMCWGVTLSAHLVVVMGTQYYDGRENAQTDYPVTDLLQMMGHASRPLVD 1735
Query: 1717 NSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTW 1776
NSGKCVILCHAPRKEYYKKFLY+AFPVESHLHHFLHDN NAEIVAG+IENKQDAVDYLTW
Sbjct: 1736 NSGKCVILCHAPRKEYYKKFLYEAFPVESHLHHFLHDNLNAEIVAGIIENKQDAVDYLTW 1795
Query: 1777 TFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGM 1836
TFMYRRLTQNPNYYNLQGVSHRHLSDHLSE+VENT+SDLEA KCI IE+DM+L+P N GM
Sbjct: 1796 TFMYRRLTQNPNYYNLQGVSHRHLSDHLSEMVENTLSDLEAGKCITIEDDMELAPLNLGM 1855
Query: 1837 IASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRF 1896
IASYYYISYTTIERFSSS+T KT+MKGLLE+L+SASEYAQLPIRPGEEEVVR+LI+HQRF
Sbjct: 1856 IASYYYISYTTIERFSSSVTSKTKMKGLLEILSSASEYAQLPIRPGEEEVVRKLINHQRF 1915
Query: 1897 SFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLS 1956
SFENPK TDPHVK NALLQAHFSRQ VGGNL LDQ+EVLLSA+RLLQAMVDVISSNGWL
Sbjct: 1916 SFENPKVTDPHVKTNALLQAHFSRQFVGGNLALDQKEVLLSANRLLQAMVDVISSNGWLG 1975
Query: 1957 LALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERR 2016
LALLAMEVSQMVTQGMWERDSMLLQLPHF KDLAK+CQENPGKSIETVFDL+EMED+ER+
Sbjct: 1976 LALLAMEVSQMVTQGMWERDSMLLQLPHFTKDLAKKCQENPGKSIETVFDLLEMEDNERQ 2035
Query: 2017 ELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPV 2076
ELL MSD QLLDIARFCNRFPNID+S+EV DS+NVRAGE +T+ V LERDLEGRTEVGPV
Sbjct: 2036 ELLGMSDSQLLDIARFCNRFPNIDLSYEVLDSDNVRAGEVVTVLVTLERDLEGRTEVGPV 2095
Query: 2077 YSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMC 2136
+ RYPKAKEEGWWL+VGDTKTN LLAIKRVSLQR+ + KL+F APA+AG+K+Y+LYFMC
Sbjct: 2096 DAPRYPKAKEEGWWLIVGDTKTNLLLAIKRVSLQRRLKAKLEFDAPADAGRKSYSLYFMC 2155
Query: 2137 DSYMGCDQEYAFTVDVKEAG 2156
DSY+GCDQEY FT+DV G
Sbjct: 2156 DSYLGCDQEYGFTIDVNADG 2175
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356525813|ref|XP_003531516.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3799 bits (9852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1858/2180 (85%), Positives = 2015/2180 (92%), Gaps = 34/2180 (1%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
+LGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDP+SFGDRA+RG
Sbjct: 3 HLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPKSFGDRAYRG 62
Query: 64 RPPELEEKLKKSA-------------------KKKKERDPDADAAAASEGTYQPKTKETR 104
RPPEL+EKL+K+ K++ D+ + + +G YQPKTKETR
Sbjct: 63 RPPELDEKLEKAKNKKKKKDRDAAADDATAVPSKRRRVQHDSVLSTSDDGVYQPKTKETR 122
Query: 105 AAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFD 164
AAYEAMLSVIQ QLGGQPL+IVS AADEILAVLKND VKNPDKKK+IEKLLNPIP HVFD
Sbjct: 123 AAYEAMLSVIQNQLGGQPLSIVSAAADEILAVLKNDTVKNPDKKKDIEKLLNPIPGHVFD 182
Query: 165 QLVSIGKLITDYQDAGDAA-GNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEED 223
QLVSIGKLITD+Q+ D G+ A +G E LDDD+GVAVEFEEN+DD+EESDLD+VQ+E+
Sbjct: 183 QLVSIGKLITDFQEVVDVPNGSSAMDGEEGLDDDVGVAVEFEENEDDDEESDLDIVQDEE 242
Query: 224 EEEEEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQID 283
E++E+ VAEPN SGAMQMGG D+D E G NEGM LNVQDIDAYWLQRKISQAF+QQID
Sbjct: 243 EDDED-VAEPNGSGAMQMGGIDDEDMEEG--NEGMGLNVQDIDAYWLQRKISQAFEQQID 299
Query: 284 PQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQD 343
PQ CQKLAEEVLKILAEGDDREVENKLL+HL+FDKFSLIKFLLRNRLK+VWCTRLARAQD
Sbjct: 300 PQHCQKLAEEVLKILAEGDDREVENKLLFHLEFDKFSLIKFLLRNRLKIVWCTRLARAQD 359
Query: 344 QEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGG- 402
QEER+KIEEEM G +L IL+QLHATRA+AKERQKNLEKSIREEARRLKD++ DG
Sbjct: 360 QEEREKIEEEMKG--TELQPILEQLHATRASAKERQKNLEKSIREEARRLKDDTGGDGDK 417
Query: 403 ----RDRRGLVDRDADGGWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGY 457
R RRG+ DRD + GWL GQRQ+LDLD++AF QGG FMA +KCDLP+GS R +KGY
Sbjct: 418 ESRDRSRRGVADRDGESGWLKGQRQMLDLDSIAFTQGGFFMAKKKCDLPDGSYRHLSKGY 477
Query: 458 EEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLC 517
EEIHVPA+K KPLDPNEKL+KIS MP+WAQPAFKGMTQLNRVQS+VY++AL DN+LLC
Sbjct: 478 EEIHVPALKAKPLDPNEKLVKISSMPDWAQPAFKGMTQLNRVQSKVYETALFKPDNLLLC 537
Query: 518 APTGAGKTNVAVLTILQQLALNRN-DDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM 576
APTGAGKTNVAVLTILQQ+A +RN +DGS +HS YKIVYVAPMKALVAEVVGNLSNRLQ
Sbjct: 538 APTGAGKTNVAVLTILQQIARHRNPEDGSIDHSAYKIVYVAPMKALVAEVVGNLSNRLQE 597
Query: 577 YDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636
YDVKVRELSGDQ+LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH
Sbjct: 598 YDVKVRELSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 657
Query: 637 DNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR 696
DNRGPVLESIVARTVRQIETTK++IRLVGLSATLPNYEDVALFLRV+L+KGLFYFDNSYR
Sbjct: 658 DNRGPVLESIVARTVRQIETTKDYIRLVGLSATLPNYEDVALFLRVDLKKGLFYFDNSYR 717
Query: 697 PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDT 756
PVPLSQQY+GI VKKPLQRFQLMND+CYEKV+AVAGKHQVLIFVHSRKETAKTARAIRD
Sbjct: 718 PVPLSQQYVGITVKKPLQRFQLMNDICYEKVMAVAGKHQVLIFVHSRKETAKTARAIRDA 777
Query: 757 ALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816
AL NDTLGRFLKEDS SREIL +HTD+VKSNDLKDLLPYGFAIHHAGMTR DRQLVEDLF
Sbjct: 778 ALANDTLGRFLKEDSASREILHTHTDLVKSNDLKDLLPYGFAIHHAGMTRTDRQLVEDLF 837
Query: 817 GDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876
DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD+MQMLGRAGRPQY
Sbjct: 838 ADGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQY 897
Query: 877 DSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIG 936
DSYGEGII+TGHSEL+YYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNA+EACNWIG
Sbjct: 898 DSYGEGIIVTGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREACNWIG 957
Query: 937 YTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQV 996
YTYLY+RMLRNP+LYG+AP+VL DITL ERRADL+HTAATILDRNNLVKYDRKSGYFQV
Sbjct: 958 YTYLYVRMLRNPSLYGIAPDVLTRDITLEERRADLIHTAATILDRNNLVKYDRKSGYFQV 1017
Query: 997 TDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL 1056
TDLGRIASYYYI+HG+ISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL
Sbjct: 1018 TDLGRIASYYYITHGSISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL 1077
Query: 1057 DRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLK 1116
DRVPIP+KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLK
Sbjct: 1078 DRVPIPIKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLK 1137
Query: 1117 RGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQEL 1176
RGWAQLAEKALNL KM TKRMWSVQTPLRQFNGIP+++L KLEKKD AWERYYDLS QE+
Sbjct: 1138 RGWAQLAEKALNLCKMGTKRMWSVQTPLRQFNGIPSDLLTKLEKKDLAWERYYDLSSQEI 1197
Query: 1177 GELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPF 1236
GELIR PKMGRTLHKF+HQFPKL LAAHVQPITRTVL+VELTITPDF WDD++HGYVEPF
Sbjct: 1198 GELIRAPKMGRTLHKFIHQFPKLNLAAHVQPITRTVLRVELTITPDFAWDDRIHGYVEPF 1257
Query: 1237 WVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTV 1296
WVIVEDNDGEYILHHEYFMLKKQYI+EDH+LNFTVPIYEPLPPQYFIRVVSD+WLGSQTV
Sbjct: 1258 WVIVEDNDGEYILHHEYFMLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDRWLGSQTV 1317
Query: 1297 LPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNT 1356
LPVSFRHLILPEKYPPPTELLDLQPLPVTALRN YE+LY+ FKHFNP+QTQVFTVLYN+
Sbjct: 1318 LPVSFRHLILPEKYPPPTELLDLQPLPVTALRNSSYESLYKDFKHFNPVQTQVFTVLYNS 1377
Query: 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416
DDNVLVAAPTGSGKTIC+EFAILRNHQK ++ VMR VY+AP+EALAKERYRDWE KFG
Sbjct: 1378 DDNVLVAAPTGSGKTICAEFAILRNHQKGPDS-VMRVVYVAPVEALAKERYRDWERKFGG 1436
Query: 1417 GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476
GL +RVVELTGETA DLKLLEKGQIIISTPEKWDALSRRWKQRK+VQQVSLFIIDELHLI
Sbjct: 1437 GLKLRVVELTGETATDLKLLEKGQIIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLI 1496
Query: 1477 GGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVR 1536
GGQGGP+LEV+VSRMRYIASQVENK RIVALSTSLANAKDLGEWIGATSHGLFNFPPGVR
Sbjct: 1497 GGQGGPILEVVVSRMRYIASQVENKSRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVR 1556
Query: 1537 PVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMT 1596
PVPLEIHIQG+DITNFEARMQAMTKPT+TAIVQHAKN KPAL+FVP+RK+VRLTAVD++T
Sbjct: 1557 PVPLEIHIQGIDITNFEARMQAMTKPTYTAIVQHAKNGKPALIFVPTRKHVRLTAVDMIT 1616
Query: 1597 YSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFE 1656
YS D +K FLL AEE+EPF+D I +EMLK TLR GVGYLHEGLN D ++V+ LFE
Sbjct: 1617 YSGADSGEK-PFLLRSAEELEPFLDKITDEMLKVTLREGVGYLHEGLNSLDHDIVTQLFE 1675
Query: 1657 AGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD 1716
AG I+VCV++SSMCWGV L AHLVVVMGTQYYDG+ENA TDYPVTDLLQMMGHASRPL+D
Sbjct: 1676 AGWIQVCVLNSSMCWGVTLLAHLVVVMGTQYYDGRENAQTDYPVTDLLQMMGHASRPLVD 1735
Query: 1717 NSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTW 1776
NSGKCVILCHAPRKEYYKKFLY+AFPVESHLHHFLHDN NAEIVAG+IENKQDAVDYLTW
Sbjct: 1736 NSGKCVILCHAPRKEYYKKFLYEAFPVESHLHHFLHDNLNAEIVAGIIENKQDAVDYLTW 1795
Query: 1777 TFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGM 1836
TFMYRRLTQNPNYYNLQGVSHRHLSDHLSE+VENT+SDLEA KCI IE+DM+L+P N GM
Sbjct: 1796 TFMYRRLTQNPNYYNLQGVSHRHLSDHLSEMVENTLSDLEAGKCITIEDDMELAPLNLGM 1855
Query: 1837 IASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRF 1896
IASYYYISYTTIERFSSS+T KT+MKGLLE+L+SASEYAQLPIRPGEEEVVR+LI+HQRF
Sbjct: 1856 IASYYYISYTTIERFSSSVTSKTKMKGLLEILSSASEYAQLPIRPGEEEVVRKLINHQRF 1915
Query: 1897 SFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLS 1956
SFENPK TDPHVKANALLQAHFSRQ VGGNL LDQ+EVLLSA+RLLQAMVDVISSNGWLS
Sbjct: 1916 SFENPKVTDPHVKANALLQAHFSRQFVGGNLALDQKEVLLSANRLLQAMVDVISSNGWLS 1975
Query: 1957 LALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERR 2016
LALLAMEVSQMVTQGMWERDSMLLQLPHF KDLAK+CQENPGKSIETVFDL+EMED+ER+
Sbjct: 1976 LALLAMEVSQMVTQGMWERDSMLLQLPHFTKDLAKKCQENPGKSIETVFDLLEMEDEERQ 2035
Query: 2017 ELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPV 2076
+LL MSD+QLLDIARFCNRFPNID+S+EV DS+NVRAGE +T+ V LERD EGRTEVGPV
Sbjct: 2036 KLLGMSDLQLLDIARFCNRFPNIDLSYEVLDSDNVRAGEVVTVLVTLERDFEGRTEVGPV 2095
Query: 2077 YSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMC 2136
+ RYPKAKEEGWWL+VGDTKTN LLAIKRVSLQRK + KL+F APA+AG+K+Y+LYFMC
Sbjct: 2096 DAPRYPKAKEEGWWLIVGDTKTNLLLAIKRVSLQRKLKAKLEFDAPADAGRKSYSLYFMC 2155
Query: 2137 DSYMGCDQEYAFTVDVKEAG 2156
DSY+GCDQEY FTVDV G
Sbjct: 2156 DSYLGCDQEYGFTVDVNADG 2175
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147802492|emb|CAN75158.1| hypothetical protein VITISV_042645 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3756 bits (9739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1838/2172 (84%), Positives = 1985/2172 (91%), Gaps = 57/2172 (2%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
+LGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESL+GKIDP++FGDRA+RG
Sbjct: 3 HLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLYGKIDPKTFGDRAYRG 62
Query: 64 RPPEL-------------------EEKLKKSAKKKKERDPDADAAAASEGTYQPKTKETR 104
RPPEL E L + +K+++ ++ ++ ++ EG YQPKTKETR
Sbjct: 63 RPPELDEKLKKSKRKKEREPQNASEPVLSRQSKRRRIQE-ESVLSSTEEGVYQPKTKETR 121
Query: 105 AAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFD 164
AAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKN+ VKNPDKKKEIE+LLNPIPNH+FD
Sbjct: 122 AAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNETVKNPDKKKEIERLLNPIPNHIFD 181
Query: 165 QLVSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDE 224
QLVSIG+LITD+QD GDAAG AANG + LDDD+GVAVEFEEN+D+EEESDLDMVQE++E
Sbjct: 182 QLVSIGRLITDFQDGGDAAGPTAANGDDALDDDVGVAVEFEENEDEEEESDLDMVQEDEE 241
Query: 225 EEEEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDP 284
E+++ + + N SGAMQMGGGIDDDD +ANEGM+LNVQDIDAYWLQRKISQA++QQIDP
Sbjct: 242 EDDDVMEQ-NGSGAMQMGGGIDDDDMQ-EANEGMTLNVQDIDAYWLQRKISQAYEQQIDP 299
Query: 285 QQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQ 344
QQCQKLAEEVLKILAEGDDREVE KLL HLQFDKFSLIKFLLRNRLK+V C
Sbjct: 300 QQCQKLAEEVLKILAEGDDREVETKLLVHLQFDKFSLIKFLLRNRLKIVCC--------- 350
Query: 345 EERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRD 404
M G L K +++ ++ + LKDES DG RD
Sbjct: 351 ----------MPQGQLL--------------KRDKRSWRRAFEKRLDVLKDESGGDGDRD 386
Query: 405 RRGLVDRDADGGWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVP 463
RRG VDRDA+ GWL GQRQLLDLD +AF QGG MAN+KC+LP GS R +KGYEE+HVP
Sbjct: 387 RRGPVDRDAESGWLKGQRQLLDLDGIAFHQGGFLMANKKCELPTGSYRHHSKGYEEVHVP 446
Query: 464 AMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAG 523
A+K L P E+L+KIS MP+WAQPAFKGMTQLNRVQS+VY++AL +A+N+LLCAPTGAG
Sbjct: 447 ALKAAALGPGEELVKISAMPDWAQPAFKGMTQLNRVQSKVYETALFTAENVLLCAPTGAG 506
Query: 524 KTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRE 583
KTNVA+LTILQQ+ALNRN DGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ YDVKV+E
Sbjct: 507 KTNVAMLTILQQIALNRNADGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQHYDVKVKE 566
Query: 584 LSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL 643
LSGDQ+LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLI+DEIHLLHDNRGPVL
Sbjct: 567 LSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIVDEIHLLHDNRGPVL 626
Query: 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ 703
ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV+L+KGLF+FDNSYRP PL+QQ
Sbjct: 627 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVDLKKGLFHFDNSYRPCPLAQQ 686
Query: 704 YIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTL 763
YIGI VKKPLQRFQLMND+CYEKV+AVAGKHQVLIFVHSRKETAKTARAIRDTAL NDTL
Sbjct: 687 YIGITVKKPLQRFQLMNDVCYEKVMAVAGKHQVLIFVHSRKETAKTARAIRDTALANDTL 746
Query: 764 GRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQV 823
GRFLKEDS SREIL SHT++VK+NDLKDLLPYGFAIHHAGM R DRQLVE+LF DGHVQV
Sbjct: 747 GRFLKEDSASREILHSHTELVKNNDLKDLLPYGFAIHHAGMARADRQLVEELFADGHVQV 806
Query: 824 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883
LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD+MQMLGRAGRPQYDSYGEGI
Sbjct: 807 LVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSYGEGI 866
Query: 884 IITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIR 943
IITGHSEL+YYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNA+EAC+WIGYTYLY+R
Sbjct: 867 IITGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREACSWIGYTYLYVR 926
Query: 944 MLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIA 1003
MLRNP LYGL+ + L DITL ERRADL+H+AA ILDRNNLVKYDRKSGYFQVTDLGRIA
Sbjct: 927 MLRNPTLYGLSHDALTRDITLEERRADLIHSAAIILDRNNLVKYDRKSGYFQVTDLGRIA 986
Query: 1004 SYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV 1063
SYYYI+HGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIP+
Sbjct: 987 SYYYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPI 1046
Query: 1064 KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLA 1123
KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRL+RALFEIVLKRGWAQL
Sbjct: 1047 KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLVRALFEIVLKRGWAQLT 1106
Query: 1124 EKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFP 1183
EKALNL KMV KRMWSVQTPLRQFN IPNEILMKLEKKD AWERYYDLS QELGELIR+P
Sbjct: 1107 EKALNLCKMVNKRMWSVQTPLRQFNAIPNEILMKLEKKDLAWERYYDLSSQELGELIRYP 1166
Query: 1184 KMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDN 1243
KMGRTLHKF+HQFPKL LAAHVQPITRTVL+VELTITPDF W+DKVHG+VEPFWVIVEDN
Sbjct: 1167 KMGRTLHKFIHQFPKLDLAAHVQPITRTVLRVELTITPDFQWEDKVHGFVEPFWVIVEDN 1226
Query: 1244 DGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRH 1303
DGEYILHHEYFM+KKQYI+E H+LNFTVPIYEPLPPQYFIRVVSD+WLGSQ+VLPVSFRH
Sbjct: 1227 DGEYILHHEYFMMKKQYIDEVHTLNFTVPIYEPLPPQYFIRVVSDRWLGSQSVLPVSFRH 1286
Query: 1304 LILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVA 1363
LILPEKYPPPTELLDLQPLPVTALRNP YEALYQ FKHFNPIQTQVFTVLYNTDDNVLVA
Sbjct: 1287 LILPEKYPPPTELLDLQPLPVTALRNPSYEALYQEFKHFNPIQTQVFTVLYNTDDNVLVA 1346
Query: 1364 APTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV 1423
APTGSGKTIC+EFAILRNHQK SE+ ++RAVYIAP+EALAKERYRDWE KFG+GLGMRVV
Sbjct: 1347 APTGSGKTICAEFAILRNHQKGSES-IVRAVYIAPIEALAKERYRDWERKFGRGLGMRVV 1405
Query: 1424 ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483
ELTGETA DLKLLE+GQ+IISTPEKWDALSRRWKQRK+VQQVSLFIIDELHLIGGQGGPV
Sbjct: 1406 ELTGETATDLKLLERGQVIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGGQGGPV 1465
Query: 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIH 1543
LEVIVSRMRYIASQ ENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIH
Sbjct: 1466 LEVIVSRMRYIASQGENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIH 1525
Query: 1544 IQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGD 1603
IQGVDI NFEARMQAMTKPT+TAIVQHAKN KPA+VFVP+RK+VRLTAVDL TYSS DG
Sbjct: 1526 IQGVDIANFEARMQAMTKPTYTAIVQHAKNRKPAIVFVPTRKHVRLTAVDLTTYSSADGG 1585
Query: 1604 QKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVC 1663
+ FLL EE+EPF+ IQEEML+ATLRHGVGYLHEGL DQEVVS LFEAG I+VC
Sbjct: 1586 ENPTFLLRSPEELEPFVGKIQEEMLRATLRHGVGYLHEGLTGMDQEVVSQLFEAGWIQVC 1645
Query: 1664 VMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723
VMSSS+CWGVPL+AHLVVVMGTQYYDG+ENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI
Sbjct: 1646 VMSSSLCWGVPLSAHLVVVMGTQYYDGRENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1705
Query: 1724 LCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRL 1783
LCHAPRKEYYKKFLY+AFPVESHL H+LHDN NAEIV GVIENKQDAVDYLTWTFMYRRL
Sbjct: 1706 LCHAPRKEYYKKFLYEAFPVESHLQHYLHDNLNAEIVVGVIENKQDAVDYLTWTFMYRRL 1765
Query: 1784 TQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYI 1843
TQNPNYYNLQGVSHRHLSDHLSE VENT+SDLEASKC+ IE+DMDLSP N GMIASYYYI
Sbjct: 1766 TQNPNYYNLQGVSHRHLSDHLSESVENTLSDLEASKCVAIEDDMDLSPLNLGMIASYYYI 1825
Query: 1844 SYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKF 1903
SYTTIERFSSSLT KT+MKGLLE+LASASEYAQ+PIRPGEE+++RRLI+HQRFSFENPK
Sbjct: 1826 SYTTIERFSSSLTSKTKMKGLLEILASASEYAQIPIRPGEEDLIRRLINHQRFSFENPKC 1885
Query: 1904 TDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAME 1963
TDPH+KANALLQAHFSRQ VGGNL LDQ EVLLSA RLLQAMVDVISSNGWL+LALLAME
Sbjct: 1886 TDPHIKANALLQAHFSRQIVGGNLALDQREVLLSAGRLLQAMVDVISSNGWLNLALLAME 1945
Query: 1964 VSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSD 2023
VSQMVTQGMWERDSMLLQLPHF KDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSD
Sbjct: 1946 VSQMVTQGMWERDSMLLQLPHFTKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSD 2005
Query: 2024 VQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPK 2083
QLLDIARFCNRFPNID ++EV DSEN+RAG+DITLQV+LERDLEGRTEVG V + RYPK
Sbjct: 2006 SQLLDIARFCNRFPNIDXTYEVLDSENLRAGDDITLQVMLERDLEGRTEVGSVDAPRYPK 2065
Query: 2084 AKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCD 2143
AKEEGWWLVVGDTK+NQLLAIKRV+LQRKS+VKL+FA PAEAG+K+YTLYFMCDSY+GCD
Sbjct: 2066 AKEEGWWLVVGDTKSNQLLAIKRVALQRKSKVKLEFAVPAEAGRKSYTLYFMCDSYLGCD 2125
Query: 2144 QEYAFTVDVKEA 2155
QEY+F+VDV +A
Sbjct: 2126 QEYSFSVDVMDA 2137
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357451431|ref|XP_003595992.1| U5 small nuclear ribonucleoprotein 200 kDa helicase [Medicago truncatula] gi|355485040|gb|AES66243.1| U5 small nuclear ribonucleoprotein 200 kDa helicase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 3693 bits (9576), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1837/2222 (82%), Positives = 1986/2222 (89%), Gaps = 75/2222 (3%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
+LGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWG+ID ++FGDR
Sbjct: 3 HLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGRIDAKNFGDRVSHD 62
Query: 64 RPPELEEKLKKSA---------------------KKKKERDPDADAAAASEGTYQPKTKE 102
RPPEL EKL + K++ ++ A +G YQPKTKE
Sbjct: 63 RPPELTEKLNAAKKKKKDREKDRDPLDSGSGQRRNKRRRMMEESVLTATDDGVYQPKTKE 122
Query: 103 TRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHV 162
TRAAYEAMLSVIQQQLGGQPL+IVSGAADEILAVLKND +KN DKKK+IEKLLN IPN V
Sbjct: 123 TRAAYEAMLSVIQQQLGGQPLSIVSGAADEILAVLKNDTLKNVDKKKDIEKLLNTIPNQV 182
Query: 163 FDQLVSIGKLITDYQDAGDAAGNDAANGGEDLDDD--MGVAVEFEENDDDEEESDLDMVQ 220
FDQLVSIGKLITD+Q+ G+ G G D D +GVAVEFEEN+DDE+E V
Sbjct: 183 FDQLVSIGKLITDFQEVGEVGGGGGGGGEVDGGLDDDVGVAVEFEENEDDEDEESDLDVV 242
Query: 221 EEDEEEEEDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQ 280
+EDEE+E+DV E N SG MQMGG IDD+D DANEGM+LNVQDIDAYWLQRKIS A++Q
Sbjct: 243 QEDEEDEDDVVEGNGSGGMQMGG-IDDEDME-DANEGMNLNVQDIDAYWLQRKISHAYEQ 300
Query: 281 QIDPQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLAR 340
IDP QCQKLA EVLKILA+ DDREVENKLL+HL++DKFSLIKFLLRNRLK++WCTRLAR
Sbjct: 301 LIDPDQCQKLAGEVLKILADPDDREVENKLLFHLEYDKFSLIKFLLRNRLKILWCTRLAR 360
Query: 341 AQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASD 400
AQDQEER+ IEEEM L IL+QLHATRA+AKERQKNLEKSIREEARRLKD++ D
Sbjct: 361 AQDQEERETIEEEMKE-SDLLQPILEQLHATRASAKERQKNLEKSIREEARRLKDDTVGD 419
Query: 401 GGRDRR--------GLVDRDADGGWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQR 451
G ++R G DRD + GWL GQRQ+LDLD L F+QGGLFMA +KCDLP+GS R
Sbjct: 420 GDKERDRDRDRIRRGAGDRDGESGWLKGQRQMLDLDNLTFEQGGLFMAKKKCDLPDGSYR 479
Query: 452 FTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSA 511
KGYEEIHVPA+K KPLDPNEKL+KIS MP+WAQPAFKGMTQLNRVQS+VY++AL
Sbjct: 480 HLEKGYEEIHVPALKAKPLDPNEKLLKISAMPDWAQPAFKGMTQLNRVQSKVYETALFKP 539
Query: 512 DNILLCAPTGAGKTNVAVLTILQQLALNRN-DDGSFNHSNYKIVYVAPMKALVAEVVGNL 570
DN+LLCAPTGAGKTNVAVLTILQQ+A +RN DDGS +HS YKIVYVAPMKALVAEVVGNL
Sbjct: 540 DNLLLCAPTGAGKTNVAVLTILQQIARHRNTDDGSIDHSAYKIVYVAPMKALVAEVVGNL 599
Query: 571 SNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIID 630
SNRLQ Y+V VRELSGDQ+LTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKL+IID
Sbjct: 600 SNRLQDYNVTVRELSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLVIID 659
Query: 631 EIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY 690
EIHLLHDNRGPVLESIVARTVRQIET+K++IRLVGLSATLPNYEDVALFLRV+L KGLFY
Sbjct: 660 EIHLLHDNRGPVLESIVARTVRQIETSKDYIRLVGLSATLPNYEDVALFLRVDLNKGLFY 719
Query: 691 FDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTA 750
FDNSYRPVPLSQQYIGI +KKPLQRFQLMND+CY KV+ VAGKHQVLIFVHSRKETAKTA
Sbjct: 720 FDNSYRPVPLSQQYIGITIKKPLQRFQLMNDICYRKVLDVAGKHQVLIFVHSRKETAKTA 779
Query: 751 RAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810
RAIRD AL +DTLGRFLKEDS SREIL +HTD+VKS+DLKDLLPYGFAIHHAGMTR DRQ
Sbjct: 780 RAIRDAALADDTLGRFLKEDSASREILHTHTDLVKSSDLKDLLPYGFAIHHAGMTRTDRQ 839
Query: 811 LVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870
LVEDLF DGH QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD+MQMLGR
Sbjct: 840 LVEDLFADGHAQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGR 899
Query: 871 AGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKE 930
AGRPQYDSYGEGII+TGHSEL+YYLSLMNQQLPIESQF+SKLADQLNAEIVLGTVQNAKE
Sbjct: 900 AGRPQYDSYGEGIILTGHSELQYYLSLMNQQLPIESQFISKLADQLNAEIVLGTVQNAKE 959
Query: 931 ACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADL---------------VHTA 975
AC+WIGYTYLY+RMLRNP+LYGLAP+VL DITL ERRADL +HTA
Sbjct: 960 ACHWIGYTYLYVRMLRNPSLYGLAPDVLSRDITLEERRADLFIELLEKGTKSLWTIIHTA 1019
Query: 976 ATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSL 1035
ATILDRNNLVKYDRKSGYFQVTDLGRIASYYYI+HGTISTYNEHLKPTMGDIELCRLFSL
Sbjct: 1020 ATILDRNNLVKYDRKSGYFQVTDLGRIASYYYITHGTISTYNEHLKPTMGDIELCRLFSL 1079
Query: 1036 SEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSD 1095
SEEFKYVTVRQDEKMELAKLLDRVPIP+KESLEEPSAKINVLLQAYISQLKLEGLS+TSD
Sbjct: 1080 SEEFKYVTVRQDEKMELAKLLDRVPIPIKESLEEPSAKINVLLQAYISQLKLEGLSMTSD 1139
Query: 1096 MVFITQ----------------------SAGRLLRALFEIVLKRGWAQLAEKALNLSKMV 1133
MVFITQ SAGRLLRALFEIVLKRGWAQLAEKALNL KMV
Sbjct: 1140 MVFITQFIRSGVPLILLFADSCIMFLFQSAGRLLRALFEIVLKRGWAQLAEKALNLCKMV 1199
Query: 1134 TKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFV 1193
TKRMWSVQTPLRQFNGIP+++L KLEKKD AWERYYDLS QE+GELIR PKMGRTLH+F+
Sbjct: 1200 TKRMWSVQTPLRQFNGIPSDVLTKLEKKDLAWERYYDLSSQEIGELIRAPKMGRTLHRFI 1259
Query: 1194 HQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEY 1253
HQFPKL LAAHVQPITRTVL VELTITPDF WDD++HGYVEPFWVIVEDNDGEYILHHEY
Sbjct: 1260 HQFPKLNLAAHVQPITRTVLGVELTITPDFAWDDRMHGYVEPFWVIVEDNDGEYILHHEY 1319
Query: 1254 FMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPP 1313
F+LKKQYIEEDH+LNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPP
Sbjct: 1320 FLLKKQYIEEDHTLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPP 1379
Query: 1314 TELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTIC 1373
TELLDLQPLPVTALRNP YEALYQ FKHFNP+QTQVFTVLYN+DDNVLVAAPTGSGKTIC
Sbjct: 1380 TELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNSDDNVLVAAPTGSGKTIC 1439
Query: 1374 SEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433
+EFAILRNHQK ++ VMR VYIAP+EALAKERYRDWE KFG GL ++VVELTGETA DL
Sbjct: 1440 AEFAILRNHQKLPDS-VMRVVYIAPVEALAKERYRDWEKKFGGGLKLKVVELTGETATDL 1498
Query: 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493
KLLEKGQ+IISTPEKWDALSRRWKQRK+VQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY
Sbjct: 1499 KLLEKGQVIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1558
Query: 1494 IASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFE 1553
I+SQ+ENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDI NFE
Sbjct: 1559 ISSQLENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIANFE 1618
Query: 1554 ARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPA 1613
ARMQAMTKPT+T+I QHAKN+KPA+VFVP+RK+VRLTAVDL+TYS D +K FLL
Sbjct: 1619 ARMQAMTKPTYTSIAQHAKNKKPAIVFVPTRKHVRLTAVDLITYSGADSGEK-PFLLRSL 1677
Query: 1614 EEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGV 1673
EE+EPFI+ I +EMLK TLR GVGYLHEGLN D ++V+ LFEAG I+VCV+SSSMCWGV
Sbjct: 1678 EELEPFINKISDEMLKVTLREGVGYLHEGLNSLDHDIVAQLFEAGWIQVCVLSSSMCWGV 1737
Query: 1674 PLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYY 1733
L+AHLVVVMGTQYYDG+ENA TDYPVTDLLQMMGHASRPL+DNSGKCVILCHAPRKEYY
Sbjct: 1738 TLSAHLVVVMGTQYYDGRENAQTDYPVTDLLQMMGHASRPLVDNSGKCVILCHAPRKEYY 1797
Query: 1734 KKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQ 1793
KKFLY+AFPVESHLHHFLHDN NAEIVAG+IENKQDAVDYLTWTFMYRRLTQNPNYYNLQ
Sbjct: 1798 KKFLYEAFPVESHLHHFLHDNLNAEIVAGIIENKQDAVDYLTWTFMYRRLTQNPNYYNLQ 1857
Query: 1794 GVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSS 1853
GVSHRHLSDHLSE+VENT+SDLEASKC+ IE+DMDLSP N GMIASYYYISYTTIERFSS
Sbjct: 1858 GVSHRHLSDHLSEMVENTLSDLEASKCVSIEDDMDLSPLNLGMIASYYYISYTTIERFSS 1917
Query: 1854 SLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANAL 1913
SLT KT+MKGLLEVL+SASEYA LPIRPGEEEVVRRLI+HQRFSFENPK TDPHVKANAL
Sbjct: 1918 SLTSKTKMKGLLEVLSSASEYAHLPIRPGEEEVVRRLINHQRFSFENPKVTDPHVKANAL 1977
Query: 1914 LQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMW 1973
LQAHFSRQ VGGNL LDQ EVLLSA+RLLQAMVDVISSNGWLS+ALLAMEVSQMVTQGMW
Sbjct: 1978 LQAHFSRQSVGGNLSLDQREVLLSANRLLQAMVDVISSNGWLSMALLAMEVSQMVTQGMW 2037
Query: 1974 ERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFC 2033
ERDSMLLQLPHF KDLAK+CQENPG+SIETVFDL+EMEDDERRELL M+D QLLDIARFC
Sbjct: 2038 ERDSMLLQLPHFTKDLAKKCQENPGRSIETVFDLLEMEDDERRELLNMTDSQLLDIARFC 2097
Query: 2034 NRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVV 2093
NRFPNID+S+E+ D++NVRAG+DITLQV LERDLEG+TEVGPV + RYPKAKEEGWWLVV
Sbjct: 2098 NRFPNIDLSYEILDNDNVRAGDDITLQVTLERDLEGKTEVGPVDAPRYPKAKEEGWWLVV 2157
Query: 2094 GDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVDVK 2153
GDTKTN LLAIKRVSLQRK + KL+FAAPA+AGKK+Y LYFMCDSYMGCDQEY FT+DVK
Sbjct: 2158 GDTKTNMLLAIKRVSLQRKLKAKLEFAAPADAGKKSYVLYFMCDSYMGCDQEYGFTLDVK 2217
Query: 2154 EA 2155
EA
Sbjct: 2218 EA 2219
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224121998|ref|XP_002318725.1| predicted protein [Populus trichocarpa] gi|222859398|gb|EEE96945.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3656 bits (9480), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1802/2179 (82%), Positives = 1972/2179 (90%), Gaps = 41/2179 (1%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
+LGGGAEAHARFKQYEYRANSSLV TTD+R RDTHEPTGEPESLWG+IDPRSFGDRA RG
Sbjct: 3 HLGGGAEAHARFKQYEYRANSSLVHTTDTRRRDTHEPTGEPESLWGRIDPRSFGDRAHRG 62
Query: 64 RPPELEEKLKKSAKKKKERDPDADA-----------------AAASEGTYQPKTKETRAA 106
RP EL+EK+ K+ KKKERD ++A + EG Y PKTKETRAA
Sbjct: 63 RPSELDEKINKAKGKKKERDALSEAVRGCQAKRRRLREESVLTSTEEGVYHPKTKETRAA 122
Query: 107 YEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQL 166
YEAMLSVIQQQLGGQPLNIVS AADEILAVLKN++V+ DK+KEIEKLLNPIPN +FDQ
Sbjct: 123 YEAMLSVIQQQLGGQPLNIVSAAADEILAVLKNESVRTQDKRKEIEKLLNPIPNSMFDQF 182
Query: 167 VSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESD-LDMVQEEDEE 225
VSIGKLITDYQD GD AG ANG + L+D++GVAVEF+E+++DEE LDMV +E+EE
Sbjct: 183 VSIGKLITDYQDGGDGAGVSVANGDDVLNDNVGVAVEFDEDNEDEEGDSDLDMVPQEEEE 242
Query: 226 EEEDVAEPNA--SGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQID 283
EEED A SGAMQMGG IDDD+ G ANEGM+LNVQDIDAYWLQRKISQA++QQID
Sbjct: 243 EEEDDDVVEAGGSGAMQMGGRIDDDEMRG-ANEGMNLNVQDIDAYWLQRKISQAYEQQID 301
Query: 284 PQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQD 343
PQQCQKLAEEVLK+LAEGDDREVE KLL HLQFDKFS IKFLL NRLK+VWCTRL R++D
Sbjct: 302 PQQCQKLAEEVLKLLAEGDDREVETKLLLHLQFDKFSFIKFLLWNRLKIVWCTRLFRSKD 361
Query: 344 QEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGR 403
QEERK+IEEEMMG PDLA IL++LHATRATAKERQKNLEKSIREEAR LKDE+ DG R
Sbjct: 362 QEERKQIEEEMMGSDPDLAGILEELHATRATAKERQKNLEKSIREEARWLKDEAGGDGDR 421
Query: 404 DRRGLVDRDADGGWL-GQRQLLDLDTLAFQQG-GLFMANRKCDLPEGSQRFTNKGYEEIH 461
RRGLVDRDA+ GWL GQ QLLDLD++AF+QG GL MAN+KCDLP GS + KGYEE+H
Sbjct: 422 GRRGLVDRDAESGWLKGQPQLLDLDSIAFEQGTGLLMANKKCDLPVGSFKHQKKGYEEVH 481
Query: 462 VPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTG 521
VPA+K + + PNE+ +KISEMP+WAQPAF+GM QLNRVQS+VY++AL ADNILL APTG
Sbjct: 482 VPALKPRAIPPNERFVKISEMPDWAQPAFEGMQQLNRVQSKVYETALFKADNILLSAPTG 541
Query: 522 AGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581
AGKTNVAVLTILQQ+ALNRN DGSFN++NYKIVYVAPMKALVAEVVGNLSNRLQ Y V+V
Sbjct: 542 AGKTNVAVLTILQQIALNRNLDGSFNNNNYKIVYVAPMKALVAEVVGNLSNRLQEYGVQV 601
Query: 582 RELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGP 641
+ELSGDQT+TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLI+DEIHLLHDNRGP
Sbjct: 602 KELSGDQTMTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIVDEIHLLHDNRGP 661
Query: 642 VLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLS 701
VLESIVARTVRQIETTKE+IRLVGLSATLPN+EDVALFLRV+LEKGLF+FDNSY+ S
Sbjct: 662 VLESIVARTVRQIETTKENIRLVGLSATLPNFEDVALFLRVDLEKGLFHFDNSYQA---S 718
Query: 702 QQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEND 761
+ RFQLMND+C+EKV+ VAGKHQVLIFVHSRKETAKTARAIRDTAL ND
Sbjct: 719 SSFS--------TRFQLMNDICHEKVMDVAGKHQVLIFVHSRKETAKTARAIRDTALAND 770
Query: 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821
TL RFL+EDS SREILQ+ +++VKSNDLKDLLPYGFAIHHAGMTRGDR LVE+ F D HV
Sbjct: 771 TLSRFLREDSASREILQTDSELVKSNDLKDLLPYGFAIHHAGMTRGDRHLVEERFRDRHV 830
Query: 822 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881
QVLVSTATLAWGVNLPAHTVIIKGTQIYNPE+GAWTELSPLD+MQMLGRAGRPQYDSYGE
Sbjct: 831 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEEGAWTELSPLDVMQMLGRAGRPQYDSYGE 890
Query: 882 GIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941
GIIITGHSEL+YYLSLMNQQLPIESQFVSKLADQLNAEIVLG+VQNA+EAC+W+ YTYLY
Sbjct: 891 GIIITGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGSVQNAREACHWLEYTYLY 950
Query: 942 IRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGR 1001
+RM+RNP LYGLAP+VL DITL ERRADL+H+AATILD+NNLVKYDRKSGYFQVTDLGR
Sbjct: 951 VRMMRNPTLYGLAPDVLTRDITLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGR 1010
Query: 1002 IASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPI 1061
IASYYYI+HGT+STYNEHLKPTMGDIELC LFSLSEEFKYVTVRQDEKMELAKLLD VPI
Sbjct: 1011 IASYYYITHGTMSTYNEHLKPTMGDIELCHLFSLSEEFKYVTVRQDEKMELAKLLDCVPI 1070
Query: 1062 PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQ 1121
P+KESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRL+RALFEIVLKRGWA+
Sbjct: 1071 PIKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAR 1130
Query: 1122 LAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIR 1181
LAEKALNL KM+ KRMWSVQTPLRQF+GI NE LM LEKKD +WERYYDL PQE+GELIR
Sbjct: 1131 LAEKALNLCKMINKRMWSVQTPLRQFHGILNETLMMLEKKDLSWERYYDLKPQEIGELIR 1190
Query: 1182 FPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVE 1241
FPKMG+TLHKF+HQFPKL LAAHVQPITRTVL+VELTIT DFLWD+ VHGYVEPFWVI+E
Sbjct: 1191 FPKMGKTLHKFIHQFPKLNLAAHVQPITRTVLRVELTITADFLWDENVHGYVEPFWVIME 1250
Query: 1242 DNDGEYILHHEYFMLKKQYIEE----DHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVL 1297
DN+G+ ILHHEYFMLK+Q ++E D +LNFTV I+EPLPPQYFIRVVSDKWLGSQTVL
Sbjct: 1251 DNNGDSILHHEYFMLKRQSVDEEQVVDPTLNFTVLIHEPLPPQYFIRVVSDKWLGSQTVL 1310
Query: 1298 PVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTD 1357
P+S RHLILPEKYPPPTELLDLQPLPVTALRNP YEALYQ FKHFNP+QTQVFTVLYNTD
Sbjct: 1311 PISLRHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNTD 1370
Query: 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417
DNVLVAAPT SGKT C+EFAILRNHQK E VMRAVYIAPLE +AKERYRDWE KFGQG
Sbjct: 1371 DNVLVAAPTASGKTTCAEFAILRNHQKGPEC-VMRAVYIAPLEVIAKERYRDWERKFGQG 1429
Query: 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477
LGMRVVELTGETA DLKLLE+GQIIISTPEKWDALSRRWKQRKYVQQVSLFI DELHLIG
Sbjct: 1430 LGMRVVELTGETATDLKLLERGQIIISTPEKWDALSRRWKQRKYVQQVSLFITDELHLIG 1489
Query: 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRP 1537
QGGPVLEVIVSRMRYIASQ+ENKIRIVALS+SLANAKDLGEWIGATSHGLFNFPPGVRP
Sbjct: 1490 DQGGPVLEVIVSRMRYIASQIENKIRIVALSSSLANAKDLGEWIGATSHGLFNFPPGVRP 1549
Query: 1538 VPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTY 1597
VPLEIHIQGVDI NF+ARMQAMTKPT+T IV+HAKN KPA+VFVP+RK+V+L AVDLMTY
Sbjct: 1550 VPLEIHIQGVDIANFDARMQAMTKPTYTYIVKHAKNGKPAIVFVPTRKHVQLAAVDLMTY 1609
Query: 1598 SSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA 1657
SS+DG +K AFLL +EE+EPFI IQEEML+ATL HGVGYLHEGL+ DQEVV LFEA
Sbjct: 1610 SSVDGGEKPAFLL-RSEELEPFIGKIQEEMLRATLYHGVGYLHEGLSSLDQEVVCQLFEA 1668
Query: 1658 GKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717
G I+VCVMSSS+CWG+PL+AHLVVVMGTQYYDGQE+A TDYPVTDLLQMMGHASRPL+DN
Sbjct: 1669 GWIQVCVMSSSLCWGLPLSAHLVVVMGTQYYDGQEDARTDYPVTDLLQMMGHASRPLIDN 1728
Query: 1718 SGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWT 1777
SGKCVILCHAPRKEYYKKFL++AFPVES LHHFLHDNFNAE+VAGVIENKQDAVDYLTWT
Sbjct: 1729 SGKCVILCHAPRKEYYKKFLHEAFPVESRLHHFLHDNFNAEVVAGVIENKQDAVDYLTWT 1788
Query: 1778 FMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMI 1837
FMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENT++DLE SKC+ IE+DMDLSP N GMI
Sbjct: 1789 FMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTLADLEKSKCVAIEDDMDLSPLNLGMI 1848
Query: 1838 ASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFS 1897
AS YYISYTTIERFSSSLTPKT+MKGLLE+L+SASEY QLPI+PGEEE++RRLI+HQRFS
Sbjct: 1849 ASCYYISYTTIERFSSSLTPKTKMKGLLEILSSASEYVQLPIQPGEEEMLRRLINHQRFS 1908
Query: 1898 FENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSL 1957
FENP++ D HVKAN LLQAHFSRQ VGGNL L+Q EVLLSASRLLQAM+ VISSNGWL+
Sbjct: 1909 FENPRYADAHVKANVLLQAHFSRQSVGGNLALEQREVLLSASRLLQAMIYVISSNGWLNC 1968
Query: 1958 ALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRE 2017
ALLAMEVSQMVTQGMWERDSMLLQLPHF K+LAK+CQENPGKSIETVFDLVEMEDDERRE
Sbjct: 1969 ALLAMEVSQMVTQGMWERDSMLLQLPHFTKELAKKCQENPGKSIETVFDLVEMEDDERRE 2028
Query: 2018 LLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVY 2077
LLQ+SD Q+LDI RFCN+FPNIDMS+EV D +NVRAGEDITL V L RDLEG TEVGPV
Sbjct: 2029 LLQLSDSQVLDIVRFCNQFPNIDMSYEVMDGDNVRAGEDITLLVTLARDLEG-TEVGPVD 2087
Query: 2078 SNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCD 2137
+ RYPK KEEGWWLVVGDTK+N LLAIKRVSLQRKS+VKL+FAAP +AG+ +YTLYFMCD
Sbjct: 2088 APRYPKPKEEGWWLVVGDTKSNLLLAIKRVSLQRKSKVKLEFAAPTDAGRMSYTLYFMCD 2147
Query: 2138 SYMGCDQEYAFTVDVKEAG 2156
SY+GCDQEY F+VDV EA
Sbjct: 2148 SYLGCDQEYNFSVDVGEAA 2166
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297850522|ref|XP_002893142.1| EMB1507 [Arabidopsis lyrata subsp. lyrata] gi|297338984|gb|EFH69401.1| EMB1507 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 3653 bits (9473), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1769/2170 (81%), Positives = 1984/2170 (91%), Gaps = 25/2170 (1%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
NLGGGAEAHARFKQYEYRANSSLVLTTD+RPRDTHEPTGEPE+LWGKIDPRSFGDR +G
Sbjct: 3 NLGGGAEAHARFKQYEYRANSSLVLTTDNRPRDTHEPTGEPETLWGKIDPRSFGDRVAKG 62
Query: 64 RPPELEEKLK----------------KSAKKKKERDPDADAAAASEGTYQPKTKETRAAY 107
RP ELE+KLK + +K+++ R+ ++ + YQPKTKETRAAY
Sbjct: 63 RPQELEDKLKKSKKKERDVVDDTANVRQSKRRRLRE-ESVLTDTDDAVYQPKTKETRAAY 121
Query: 108 EAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLV 167
EAMLS+IQQQLGGQPL+IVSGAADEILAVLKND +NP+KK EIEKLLN I NH FDQLV
Sbjct: 122 EAMLSLIQQQLGGQPLSIVSGAADEILAVLKNDTFRNPEKKMEIEKLLNHIENHEFDQLV 181
Query: 168 SIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEE 227
SIGKLITD+Q+ GD+ G A+ E LDDD+GVAVEFEEN++D++ESD DMVQEED+EE+
Sbjct: 182 SIGKLITDFQEGGDSGGG-KADEEEGLDDDLGVAVEFEENEEDDDESDPDMVQEEDDEED 240
Query: 228 EDVAEPNASGAMQMGGGIDDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQC 287
EP +G MQ+ GI+D D +GDANEG +LNVQDIDAYWLQRKISQA++QQIDPQQC
Sbjct: 241 ---EEPTRTGGMQVDAGINDQD-AGDANEGANLNVQDIDAYWLQRKISQAYEQQIDPQQC 296
Query: 288 QKLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEER 347
Q LAEE+LK+LAEGDDR VENKLL HLQF+KFSL+KFLLRNRLKVVWCTRLARA+DQEER
Sbjct: 297 QVLAEELLKVLAEGDDRVVENKLLMHLQFEKFSLVKFLLRNRLKVVWCTRLARAEDQEER 356
Query: 348 KKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGGRDRRG 407
K+IEEEM GLGP+L AI++QLHATRATAKER++NL+KSI EEARRLKDE+ DGGR RR
Sbjct: 357 KRIEEEMRGLGPELTAIVEQLHATRATAKEREENLQKSINEEARRLKDETGGDGGRRRRD 416
Query: 408 LVDRDADGGWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMK 466
+ DRD++ GW+ GQRQ+LDL++LAF QGGL MAN+KCDLP GS R KGY+E+HVP +
Sbjct: 417 VADRDSESGWVKGQRQMLDLESLAFDQGGLLMANKKCDLPPGSYRSHGKGYDEVHVPWVS 476
Query: 467 HKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
K +D NEKL+KI+EMP+WAQPAFKGM QLNRVQS+VY +AL A+N+LLCAPTGAGKTN
Sbjct: 477 KK-VDSNEKLVKITEMPDWAQPAFKGMQQLNRVQSKVYDTALFKAENLLLCAPTGAGKTN 535
Query: 527 VAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSG 586
VA+LTILQQL +NRN DG++NH +YKIVYVAPMKALVAEVVGNLSNRL+ Y V VRELSG
Sbjct: 536 VAMLTILQQLEMNRNKDGTYNHGDYKIVYVAPMKALVAEVVGNLSNRLKDYGVTVRELSG 595
Query: 587 DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESI 646
DQ+LT ++IEETQIIVTTPEKWDIITRKSGDRTYTQLV+LLIIDEIHLLHDNRGPVLESI
Sbjct: 596 DQSLTGREIEETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLHDNRGPVLESI 655
Query: 647 VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG 706
VART+RQIETTKE+IRLVGLSATLPNYEDVALFLRV+L+KGLF FD SYRPVPL QQYIG
Sbjct: 656 VARTLRQIETTKENIRLVGLSATLPNYEDVALFLRVDLKKGLFKFDRSYRPVPLHQQYIG 715
Query: 707 IQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRF 766
I VKKPLQRFQLMNDLCY+KV+A AGKHQVLIFVHSRKETAKTA+AIRDTA+ NDTL RF
Sbjct: 716 ISVKKPLQRFQLMNDLCYQKVLAGAGKHQVLIFVHSRKETAKTAKAIRDTAMANDTLSRF 775
Query: 767 LKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826
LKEDSV+RE+LQSH D+VK+ +LK++LPYGFAIHHAG+TRGDR++VE+LF GHVQVLVS
Sbjct: 776 LKEDSVTREVLQSHVDIVKNGELKNILPYGFAIHHAGLTRGDREIVENLFAQGHVQVLVS 835
Query: 827 TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886
TATLAWGVNLPAHTVIIKGTQ+YNPEKGAW ELSPLD+MQMLGRAGRPQYD +GEGIIIT
Sbjct: 836 TATLAWGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDRHGEGIIIT 895
Query: 887 GHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLR 946
G+SEL+YYLSLMN+QLPIESQF+SKLADQLNAEIVLGTVQNA+EAC+W+GYTYLYIRM+R
Sbjct: 896 GYSELQYYLSLMNEQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRMVR 955
Query: 947 NPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYY 1006
NP LYGLAP+ L +D+ L ERRADL+H+AATILD+NNLVKYDRKSGYFQVTDLGRIASYY
Sbjct: 956 NPTLYGLAPDALAKDVVLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYY 1015
Query: 1007 YISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKES 1066
YI+HGTI+TYNEHLKPTMGDI+L RLFSLSEEFKYVTVRQDEKMELAKLLDRVPIP+KE+
Sbjct: 1016 YITHGTIATYNEHLKPTMGDIDLYRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIKET 1075
Query: 1067 LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKA 1126
LEEPSAKINVLLQAYISQLKLEGLSLTSDMV+ITQSAGRL+RAL+EIVLKRGWAQLAEKA
Sbjct: 1076 LEEPSAKINVLLQAYISQLKLEGLSLTSDMVYITQSAGRLVRALYEIVLKRGWAQLAEKA 1135
Query: 1127 LNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMG 1186
LNLSKMV +RMWSVQTPLRQF+GIPN+ILM LEKKD WERYYDLS QELGELIR PKMG
Sbjct: 1136 LNLSKMVGRRMWSVQTPLRQFHGIPNDILMNLEKKDLVWERYYDLSSQELGELIRSPKMG 1195
Query: 1187 RTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGE 1246
R LHKF+HQFPKL L+AHVQPITRTVLKVELT+TPDFLWD+K+H YVEPFW+IVEDNDGE
Sbjct: 1196 RPLHKFIHQFPKLTLSAHVQPITRTVLKVELTVTPDFLWDEKIHKYVEPFWIIVEDNDGE 1255
Query: 1247 YILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLIL 1306
ILHHEYF+LK+QYI+EDH+LNFTVPI+EPLPPQYF+RVVSDKWLGS+TVLPVSFRHLIL
Sbjct: 1256 KILHHEYFLLKQQYIDEDHTLNFTVPIFEPLPPQYFVRVVSDKWLGSETVLPVSFRHLIL 1315
Query: 1307 PEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPT 1366
PEKYPPPTELLDLQPLPVTALRNP YE LYQ FKHFNP+QTQVFTVLYNT+DNVLVAAPT
Sbjct: 1316 PEKYPPPTELLDLQPLPVTALRNPNYEILYQDFKHFNPVQTQVFTVLYNTNDNVLVAAPT 1375
Query: 1367 GSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELT 1426
GSGKTIC+EFAILRNHQ+ + MR VYIAPLEA+AKE++R WE KFG+GLG+RVVELT
Sbjct: 1376 GSGKTICAEFAILRNHQEGPD-ATMRVVYIAPLEAIAKEQFRIWEGKFGKGLGLRVVELT 1434
Query: 1427 GETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEV 1486
GETA+DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFI+DELHLIGGQGGPVLEV
Sbjct: 1435 GETALDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIVDELHLIGGQGGPVLEV 1494
Query: 1487 IVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQG 1546
IVSRMRYI+SQV NKIRIVALSTSLANAKDLGEWIGA+SHGLFNFPPGVRPVPLEIHIQG
Sbjct: 1495 IVSRMRYISSQVNNKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPLEIHIQG 1554
Query: 1547 VDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS 1606
VDI++FEARMQAMTKPT+TAIVQHAKN+KPA+VFVP+RK+VRLTAVDLM YS MD Q
Sbjct: 1555 VDISSFEARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLMAYSHMDNPQSP 1614
Query: 1607 AFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMS 1666
FLL EE++PF+ I+EE LK TLRHG+GYLHEGL+ DQE+V+ LFEAG+I+ CVMS
Sbjct: 1615 DFLLGQLEELDPFVSQIREETLKETLRHGIGYLHEGLSSLDQEIVTQLFEAGRIQACVMS 1674
Query: 1667 SSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCH 1726
SS+CWG PLTAHLVVVMGTQYYDG+EN+H+DYPV DLLQMMG ASRPLLDN+GKCVI CH
Sbjct: 1675 SSLCWGTPLTAHLVVVMGTQYYDGRENSHSDYPVPDLLQMMGRASRPLLDNAGKCVIFCH 1734
Query: 1727 APRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQN 1786
AP+KEYYKKFLY+AFPVES L HFLHDNFNAE+VAGVIENKQDAVDYLTWTFMYRRL QN
Sbjct: 1735 APQKEYYKKFLYEAFPVESQLQHFLHDNFNAEVVAGVIENKQDAVDYLTWTFMYRRLPQN 1794
Query: 1787 PNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYT 1846
PNYYNLQGVSHRHLSDHLSELVENT+S+LEASKCI IE++M+LSP N GMIASYYYISYT
Sbjct: 1795 PNYYNLQGVSHRHLSDHLSELVENTLSNLEASKCIEIEDEMELSPLNLGMIASYYYISYT 1854
Query: 1847 TIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDP 1906
TIERFSS L+ KT+MKGLLE+L SASEY +PIRPGEE+ VRRLI+HQRFSFENPK TDP
Sbjct: 1855 TIERFSSLLSSKTKMKGLLEILTSASEYDMIPIRPGEEDTVRRLINHQRFSFENPKCTDP 1914
Query: 1907 HVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQ 1966
HVKANALLQAHFSRQ +GGNL +DQ +VLLSA+RLLQAMVDVISSNGWL+LALLAMEVSQ
Sbjct: 1915 HVKANALLQAHFSRQNIGGNLAMDQRDVLLSATRLLQAMVDVISSNGWLNLALLAMEVSQ 1974
Query: 1967 MVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQL 2026
MVTQGMWERDSMLLQLPHF KDLAKRCQENPGK+IETVFDLVEMED+ER+ELL+MSD QL
Sbjct: 1975 MVTQGMWERDSMLLQLPHFTKDLAKRCQENPGKNIETVFDLVEMEDEERQELLKMSDAQL 2034
Query: 2027 LDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKE 2086
LDIARFCNRFPNID+++E+ SE V G+++TLQV+LERD+EGRTEVGPV S RYPK KE
Sbjct: 2035 LDIARFCNRFPNIDLTYEIVGSEEVNPGKEVTLQVMLERDMEGRTEVGPVDSLRYPKTKE 2094
Query: 2087 EGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEY 2146
EGWWLVVGDTKTNQLLAIKRVSLQ+K++VKLDF P+E G+K+YTLYFMCDSY+GCDQEY
Sbjct: 2095 EGWWLVVGDTKTNQLLAIKRVSLQQKAKVKLDFTVPSEPGEKSYTLYFMCDSYLGCDQEY 2154
Query: 2147 AFTVDVKEAG 2156
+F+VDVK +G
Sbjct: 2155 SFSVDVKGSG 2164
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2158 | ||||||
| TAIR|locus:2037375 | 2171 | emb1507 "embryo defective 1507 | 0.994 | 0.988 | 0.778 | 0.0 | |
| TAIR|locus:2059969 | 2172 | AT2G42270 [Arabidopsis thalian | 0.993 | 0.987 | 0.733 | 0.0 | |
| UNIPROTKB|O75643 | 2136 | SNRNP200 "U5 small nuclear rib | 0.866 | 0.875 | 0.602 | 0.0 | |
| ZFIN|ZDB-GENE-081105-64 | 2134 | si:ch211-251j10.5 "si:ch211-25 | 0.867 | 0.876 | 0.599 | 0.0 | |
| UNIPROTKB|E1BH78 | 2136 | LOC100850262 "Uncharacterized | 0.866 | 0.875 | 0.600 | 0.0 | |
| UNIPROTKB|F1LNJ2 | 2139 | Ascc3l1 "Protein Ascc3l1" [Rat | 0.866 | 0.874 | 0.601 | 0.0 | |
| FB|FBgn0263599 | 2142 | l(3)72Ab "lethal (3) 72Ab" [Dr | 0.855 | 0.862 | 0.586 | 0.0 | |
| WB|WBGene00012896 | 2145 | snrp-200 [Caenorhabditis elega | 0.857 | 0.862 | 0.532 | 0.0 | |
| UNIPROTKB|Q9U2G0 | 2145 | Y46G5A.4 "Putative U5 small nu | 0.857 | 0.862 | 0.532 | 0.0 | |
| DICTYBASE|DDB_G0270042 | 2237 | ascc3l "U5 small nuclear ribon | 0.864 | 0.834 | 0.506 | 0.0 |
| TAIR|locus:2037375 emb1507 "embryo defective 1507" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 8774 (3093.7 bits), Expect = 0., P = 0.
Identities = 1688/2169 (77%), Positives = 1884/2169 (86%)
Query: 4 NLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFRG 63
NLGGGAEAHARFKQYEYRANSSLVLTTD+RPRDTHEPTGEPE+LWGKIDPRSFGDR +G
Sbjct: 3 NLGGGAEAHARFKQYEYRANSSLVLTTDNRPRDTHEPTGEPETLWGKIDPRSFGDRVAKG 62
Query: 64 RPPXXXXXXXXXXXXXXXRDPDADAAAAS---------------EGTYQPKTKETRAAYE 108
RP D S + YQPKTKETRAAYE
Sbjct: 63 RPQELEDKLKKSKKKERDVVDDMVNIRQSKRRRLREESVLTDTDDAVYQPKTKETRAAYE 122
Query: 109 AMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVS 168
AML +IQ+QLGGQP +IVSGAADEILAVLKNDA +NP+KK EIEKLLN I NH FDQLVS
Sbjct: 123 AMLGLIQKQLGGQPPSIVSGAADEILAVLKNDAFRNPEKKMEIEKLLNKIENHEFDQLVS 182
Query: 169 IGKLITDYQXXXXXXXXXXXXXXXXXXXXMGVAVXXXXXXXXXXXXXXXMVQXXXXXXXX 228
IGKLITD+Q +GVAV MV+
Sbjct: 183 IGKLITDFQEGGDSGGGRANDDEGLDDD-LGVAVEFEENEEDDEESDPDMVEEDDDEEDD 241
Query: 229 XVAEPNASGAMQMXXXXXXXXXXXXXXXXMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQ 288
EP +G MQ+ +LNVQDIDAYWLQRKISQA++QQIDPQQCQ
Sbjct: 242 ---EPTRTGGMQVDAGINDEDAGDANEGT-NLNVQDIDAYWLQRKISQAYEQQIDPQQCQ 297
Query: 289 KLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERK 348
LAEE+LKILAEGDDR VE+KLL HLQ++KFSL+KFLLRNRLKVVWCTRLARA+DQEER
Sbjct: 298 VLAEELLKILAEGDDRVVEDKLLMHLQYEKFSLVKFLLRNRLKVVWCTRLARAEDQEERN 357
Query: 349 KIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASXXXXXXXXX 408
+IEEEM GLGP+L AI++QLHATRATAKER++NL+KSI EEARRLKDE+
Sbjct: 358 RIEEEMRGLGPELTAIVEQLHATRATAKEREENLQKSINEEARRLKDETGGDGGRGRRDV 417
Query: 409 XXXXXXXXWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKH 467
W+ GQRQ+LDL++LAF QGGL MAN+KCDLP GS R KGY+E+HVP +
Sbjct: 418 ADRDSESGWVKGQRQMLDLESLAFDQGGLLMANKKCDLPPGSYRSHGKGYDEVHVPWVSK 477
Query: 468 KPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNV 527
K +D NEKL+KI+EMP+WAQPAFKGM QLNRVQS+VY +AL A+NILLCAPTGAGKTNV
Sbjct: 478 K-VDRNEKLVKITEMPDWAQPAFKGMQQLNRVQSKVYDTALFKAENILLCAPTGAGKTNV 536
Query: 528 AVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD 587
A+LTILQQL +NRN DG++NH +YKIVYVAPMKALVAEVVGNLSNRL+ Y V VRELSGD
Sbjct: 537 AMLTILQQLEMNRNTDGTYNHGDYKIVYVAPMKALVAEVVGNLSNRLKDYGVIVRELSGD 596
Query: 588 QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESIV 647
Q+LT ++IEETQIIVTTPEKWDIITRKSGDRTYTQLV+ NRGPVLESIV
Sbjct: 597 QSLTGREIEETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLHDNRGPVLESIV 656
Query: 648 ARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI 707
ART+RQIETTKE+IRLVGLSATLPNYEDVALFLRV+L+KGLF FD SYRPVPL QQYIGI
Sbjct: 657 ARTLRQIETTKENIRLVGLSATLPNYEDVALFLRVDLKKGLFKFDRSYRPVPLHQQYIGI 716
Query: 708 QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767
VKKPLQRFQLMNDLCY+KV+A AGKHQVLIFVHSRKET+KTARAIRDTA+ NDTL RFL
Sbjct: 717 SVKKPLQRFQLMNDLCYQKVLAGAGKHQVLIFVHSRKETSKTARAIRDTAMANDTLSRFL 776
Query: 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST 827
KEDSV+R++L SH D+VK++DLKD+LPYGFAIHHAG++RGDR++VE LF GHVQVLVST
Sbjct: 777 KEDSVTRDVLHSHEDIVKNSDLKDILPYGFAIHHAGLSRGDREIVETLFSQGHVQVLVST 836
Query: 828 ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887
ATLAWGVNLPAHTVIIKGTQ+YNPEKGAW ELSPLD+MQMLGRAGRPQYD +GEGIIITG
Sbjct: 837 ATLAWGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQMLGRAGRPQYDQHGEGIIITG 896
Query: 888 HSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRN 947
+SEL+YYLSLMN+QLPIESQF+SKLADQLNAEIVLGTVQNA+EAC+W+GYTYLYIRM+RN
Sbjct: 897 YSELQYYLSLMNEQLPIESQFISKLADQLNAEIVLGTVQNAREACHWLGYTYLYIRMVRN 956
Query: 948 PALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYY 1007
P LYGLAP+ L +D+ L ERRADL+H+AATILD+NNLVKYDRKSGYFQVTDLGRIASYYY
Sbjct: 957 PTLYGLAPDALAKDVVLEERRADLIHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYY 1016
Query: 1008 ISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESL 1067
I+HGTI+TYNEHLKPTMGDI+L RLFSLS+EFKYVTVRQDEKMELAKLLDRVPIP+KE+L
Sbjct: 1017 ITHGTIATYNEHLKPTMGDIDLYRLFSLSDEFKYVTVRQDEKMELAKLLDRVPIPIKETL 1076
Query: 1068 EEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKAL 1127
EEPSAKINVLLQAYISQLKLEGLSLTSDMV+ITQSAGRL+RAL+EIVLKRGWAQLAEKAL
Sbjct: 1077 EEPSAKINVLLQAYISQLKLEGLSLTSDMVYITQSAGRLVRALYEIVLKRGWAQLAEKAL 1136
Query: 1128 NLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGR 1187
NLSKMV KRMWSVQTPLRQF+G+ N+ILM+LEKKD WERYYDLS QELGELIR PKMG+
Sbjct: 1137 NLSKMVGKRMWSVQTPLRQFHGLSNDILMQLEKKDLVWERYYDLSAQELGELIRSPKMGK 1196
Query: 1188 TLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEY 1247
LHKF+HQFPK+ L+AHVQPITRTVL VELT+TPDFLWD+K+H YVEPFW+IVEDNDGE
Sbjct: 1197 PLHKFIHQFPKVTLSAHVQPITRTVLNVELTVTPDFLWDEKIHKYVEPFWIIVEDNDGEK 1256
Query: 1248 ILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILP 1307
ILHHEYF+LKKQYI+EDH+L+FTVPI+EPLPPQYF+RVVSDKWLGS+TVLPVSFRHLILP
Sbjct: 1257 ILHHEYFLLKKQYIDEDHTLHFTVPIFEPLPPQYFVRVVSDKWLGSETVLPVSFRHLILP 1316
Query: 1308 EKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTG 1367
EKYPPPTELLDLQPLPVTALRNP YE LYQ FKHFNP+QTQVFTVLYNT+DNVLVAAPTG
Sbjct: 1317 EKYPPPTELLDLQPLPVTALRNPNYEILYQDFKHFNPVQTQVFTVLYNTNDNVLVAAPTG 1376
Query: 1368 SGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTG 1427
SGKTIC+EFAILRNH + + MR VYIAPLEA+AKE++R WE KFG+GLG+RVVELTG
Sbjct: 1377 SGKTICAEFAILRNHHEGPDA-TMRVVYIAPLEAIAKEQFRIWEGKFGKGLGLRVVELTG 1435
Query: 1428 ETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVI 1487
ETA+DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFI+DELHLIGGQ GPVLEVI
Sbjct: 1436 ETALDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIVDELHLIGGQHGPVLEVI 1495
Query: 1488 VSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGV 1547
VSRMRYI+SQV NKIRIVALSTSLANAKDLGEWIGA+SHGLFNFPPGVRPVPLEIHIQGV
Sbjct: 1496 VSRMRYISSQVINKIRIVALSTSLANAKDLGEWIGASSHGLFNFPPGVRPVPLEIHIQGV 1555
Query: 1548 DITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSA 1607
DI++FEARMQAMTKPT+TAIVQHAKN+KPA+VFVP+RK+VRLTAVDLM YS MD Q
Sbjct: 1556 DISSFEARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLMAYSHMDNPQSPD 1615
Query: 1608 FLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSS 1667
FLL EE++PF++ I+EE LK TL HG+GYLHEGL+ DQE+V+ LFEAG+I+VCVMSS
Sbjct: 1616 FLLGKLEELDPFVEQIREETLKETLCHGIGYLHEGLSSLDQEIVTQLFEAGRIQVCVMSS 1675
Query: 1668 SMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHA 1727
S+CWG PLTAHLVVVMGTQYYDG+EN+H+DYPV DLLQMMG ASRPLLDN+GKCVI CHA
Sbjct: 1676 SLCWGTPLTAHLVVVMGTQYYDGRENSHSDYPVPDLLQMMGRASRPLLDNAGKCVIFCHA 1735
Query: 1728 PRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNP 1787
PRKEYYKKFLY+AFPVES L HFLHDNFNAE+VAGVIENKQDAVDYLTWTFMYRRL QNP
Sbjct: 1736 PRKEYYKKFLYEAFPVESQLQHFLHDNFNAEVVAGVIENKQDAVDYLTWTFMYRRLPQNP 1795
Query: 1788 NYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIAXXXXXXXXX 1847
NYYNLQGVSHRHLSDHLSELVENT+SDLEASKCI +E++M+LSP N GMIA
Sbjct: 1796 NYYNLQGVSHRHLSDHLSELVENTLSDLEASKCIEVEDEMELSPLNLGMIASYYYISYTT 1855
Query: 1848 XERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPH 1907
ERFSS L+ KT+MKGLLE+L SASEY +PIRPGEE+ VRRLI+HQRFSFENPK TDPH
Sbjct: 1856 IERFSSLLSSKTKMKGLLEILTSASEYDMIPIRPGEEDTVRRLINHQRFSFENPKCTDPH 1915
Query: 1908 VKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQM 1967
VKANALLQAHFSRQ +GGNL +DQ +VLLSA+RLLQAMVDVISSNGWL+LALLAMEVSQM
Sbjct: 1916 VKANALLQAHFSRQNIGGNLAMDQRDVLLSATRLLQAMVDVISSNGWLNLALLAMEVSQM 1975
Query: 1968 VTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLL 2027
VTQGMWERDSMLLQLPHF KDLAKRCQENPGK+IETVFDLVEMED+ER+ELL+MSD QLL
Sbjct: 1976 VTQGMWERDSMLLQLPHFTKDLAKRCQENPGKNIETVFDLVEMEDEERQELLKMSDAQLL 2035
Query: 2028 DIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEE 2087
DIARFCNRFPNID+++E+ SE V G+++TLQV+LERD+EGRTEVGPV S RYPK KEE
Sbjct: 2036 DIARFCNRFPNIDLTYEIVGSEEVNPGKEVTLQVMLERDMEGRTEVGPVDSLRYPKTKEE 2095
Query: 2088 GWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYA 2147
GWWLVVGDTKTNQLLAIKRVSLQRK +VKLDF AP+E G+K+YTLYFMCDSY+GCDQEY+
Sbjct: 2096 GWWLVVGDTKTNQLLAIKRVSLQRKVKVKLDFTAPSEPGEKSYTLYFMCDSYLGCDQEYS 2155
Query: 2148 FTVDVKEAG 2156
F+VDVK +G
Sbjct: 2156 FSVDVKGSG 2164
|
|
| TAIR|locus:2059969 AT2G42270 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 8190 (2888.1 bits), Expect = 0., P = 0.
Identities = 1590/2169 (73%), Positives = 1813/2169 (83%)
Query: 4 NLGGG-AEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPRSFGDRAFR 62
NLGGG AE AR KQY Y+ NSSLVL +D R RDTHE +GEPESL G+IDP+SFGDR R
Sbjct: 3 NLGGGGAEEQARLKQYGYKVNSSLVLNSDERRRDTHESSGEPESLRGRIDPKSFGDRVVR 62
Query: 63 GRPPXXXXXXXXXXXXXXXRDPDADAAAAS--------------EGTYQPKTKETRAAYE 108
GRP D A + +G YQPKTKETR A+E
Sbjct: 63 GRPHELDERLNKSKKKKERCDDLVSARESKRVRLREVSVLNDTEDGVYQPKTKETRVAFE 122
Query: 109 AMLSVIQQQLGGQPLNIVSGAADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVS 168
ML +IQQQLGGQPL+IV GAADEILAVLKN++VKN +KK EIEKLLN I + VF Q VS
Sbjct: 123 IMLGLIQQQLGGQPLDIVCGAADEILAVLKNESVKNHEKKVEIEKLLNVITDQVFSQFVS 182
Query: 169 IGKLITDYQXXXXXXXXXXXXXXXXXXXXMGVAVXXXXXXXXXXXXXXXMVQXXXXXXXX 228
IGKLITDY+ +GVA+ MVQ
Sbjct: 183 IGKLITDYEEGGDSLSGKASEDGGLDYD-IGVALECEEDDDESDLD---MVQDEKDEEDE 238
Query: 229 XVAEPNASGAMQMXXXXXXXXXXXXXXXXMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQ 288
V E N +G +Q+ SLNV DIDAYWLQRKISQ ++Q+ID Q+CQ
Sbjct: 239 DVVELNKTGVVQVGVAINGEDARQAKEDT-SLNVLDIDAYWLQRKISQEYEQKIDAQECQ 297
Query: 289 KLAEEVLKILAEGDDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARAQDQEERK 348
+LAEE+LKILAEG+DR+VE KLL HLQF+KFSL+KFLL+NRLKVVWCTRLAR +DQEER
Sbjct: 298 ELAEELLKILAEGNDRDVEIKLLEHLQFEKFSLVKFLLQNRLKVVWCTRLARGRDQEERN 357
Query: 349 KIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDE-SASXXXXXXXX 407
+IEEEM+GLG +LAAI+ +LHA RATAKER++ EK I+EEA+ L D+ S
Sbjct: 358 QIEEEMLGLGSELAAIVKELHAKRATAKEREEKREKDIKEEAQHLMDDDSGVDGDRGMRD 417
Query: 408 XXXXXXXXXWL-GQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMK 466
WL GQRQ++DL++LAF QGG N KC+LP+ S R K ++E+HVP +
Sbjct: 418 VDDLDLENGWLKGQRQVMDLESLAFNQGGFTRENNKCELPDRSFRIRGKEFDEVHVPWVS 477
Query: 467 HKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTN 526
K D NEKL+KIS++PEWAQPAF+GM QLNRVQS+VY +AL ADNILLCAPTGAGKTN
Sbjct: 478 KK-FDSNEKLVKISDLPEWAQPAFRGMQQLNRVQSKVYGTALFKADNILLCAPTGAGKTN 536
Query: 527 VAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSG 586
VAVLTIL QL LN N G+FNH NYKIVYVAPMKALVAEVV +LS RL+ + V V+ELSG
Sbjct: 537 VAVLTILHQLGLNMNPGGTFNHGNYKIVYVAPMKALVAEVVDSLSQRLKDFGVTVKELSG 596
Query: 587 DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGPVLESI 646
DQ+LT Q+I+ETQIIVTTPEKWDIITRKSGDRTYTQLV+ NRGPVLESI
Sbjct: 597 DQSLTGQEIKETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDEIHLLDDNRGPVLESI 656
Query: 647 VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG 706
VART+RQIE+TKEHIRLVGLSATLPN +DVA FLRV+L+ GLF FD SYRPVPL QQYIG
Sbjct: 657 VARTLRQIESTKEHIRLVGLSATLPNCDDVASFLRVDLKNGLFIFDRSYRPVPLGQQYIG 716
Query: 707 IQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRF 766
I VKKPL+RFQLMND+CY+KVVAVAGKHQVLIFVHSRKETAKTARAIRDTA+ NDTL RF
Sbjct: 717 INVKKPLRRFQLMNDICYQKVVAVAGKHQVLIFVHSRKETAKTARAIRDTAMANDTLSRF 776
Query: 767 LKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826
LKEDS SREIL+ ++K+NDLK+LLPYGFAIHHAG+TR DR++VE+ F G++QVL+S
Sbjct: 777 LKEDSQSREILKCLAGLLKNNDLKELLPYGFAIHHAGLTRTDREIVENQFRWGNLQVLIS 836
Query: 827 TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886
TATLAWGVNLPAHTVIIKGTQ+YNPE+G W ELSPLD+MQM+GRAGRPQYD GEGIIIT
Sbjct: 837 TATLAWGVNLPAHTVIIKGTQVYNPERGEWMELSPLDVMQMIGRAGRPQYDQQGEGIIIT 896
Query: 887 GHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLR 946
G+S+L+YYL LMN+QLPIESQF+SKLADQLNAEIVLGT+QNA+EAC+W+GYTYLY+RM+R
Sbjct: 897 GYSKLQYYLRLMNEQLPIESQFISKLADQLNAEIVLGTIQNAREACHWLGYTYLYVRMVR 956
Query: 947 NPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYY 1006
NP LYG++P+ L +D+ L ERRADL+H+AATILD+NNL+KYDRKSG+FQVTDLGRIASYY
Sbjct: 957 NPTLYGVSPDALAKDLLLEERRADLIHSAATILDKNNLIKYDRKSGHFQVTDLGRIASYY 1016
Query: 1007 YISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKES 1066
YISHGTI+ YNE+LKPTM DIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE+
Sbjct: 1017 YISHGTIAAYNENLKPTMNDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKET 1076
Query: 1067 LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKA 1126
LE+PSAKINVLLQ YIS+LKLEGLSLTSDMV+ITQSAGRLLRA+FEIVLKRGWAQL++KA
Sbjct: 1077 LEDPSAKINVLLQVYISKLKLEGLSLTSDMVYITQSAGRLLRAIFEIVLKRGWAQLSQKA 1136
Query: 1127 LNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMG 1186
LNLSKMV KRMWSVQTPL QF GIP EILMKLEK D WERYYDLS QELGELI PKMG
Sbjct: 1137 LNLSKMVGKRMWSVQTPLWQFPGIPKEILMKLEKNDLVWERYYDLSSQELGELICNPKMG 1196
Query: 1187 RTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGE 1246
R LHK++HQFPKL LAAHVQPI+R+VL+VELT+TPDF WDDK + YVEPFW+IVEDNDGE
Sbjct: 1197 RPLHKYIHQFPKLKLAAHVQPISRSVLQVELTVTPDFHWDDKANKYVEPFWIIVEDNDGE 1256
Query: 1247 YILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFRHLIL 1306
ILHHEYF+ KK+ I+EDH+LNFTVPI EP+PPQYFIRVVSDKWL S TVLPVSFRHLIL
Sbjct: 1257 KILHHEYFLFKKRVIDEDHTLNFTVPISEPIPPQYFIRVVSDKWLDSPTVLPVSFRHLIL 1316
Query: 1307 PEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPT 1366
PEKYPPPTELLDLQPLPV ALRNP YE LYQ FKHFNP+QTQVFTVLYNT DNV+VAAPT
Sbjct: 1317 PEKYPPPTELLDLQPLPVMALRNPSYETLYQDFKHFNPVQTQVFTVLYNTSDNVVVAAPT 1376
Query: 1367 GSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELT 1426
GSGKTIC+EFAILRNH + ++ MR VYIAPLEA+AKE++RDWE KFG+GLG+RVVELT
Sbjct: 1377 GSGKTICAEFAILRNHLEGPDSA-MRVVYIAPLEAIAKEQFRDWEKKFGKGLGLRVVELT 1435
Query: 1427 GETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEV 1486
GET +DLKLLEKGQIIISTPEKWDALSRRWKQRKY+QQVSLFI+DELHLIGGQGG VLEV
Sbjct: 1436 GETLLDLKLLEKGQIIISTPEKWDALSRRWKQRKYIQQVSLFIVDELHLIGGQGGQVLEV 1495
Query: 1487 IVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQG 1546
IVSRMRYI+SQV NKIRIVALSTSLANAKDLGEWIGA+S G+FNFPP VRPVPLEIHI G
Sbjct: 1496 IVSRMRYISSQVGNKIRIVALSTSLANAKDLGEWIGASSCGVFNFPPNVRPVPLEIHIHG 1555
Query: 1547 VDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS 1606
VDI +FEARMQAMTKPT+TAIVQHAKN+KPA+VFVP+RK+VRLTAVDL+ YS MD +
Sbjct: 1556 VDILSFEARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLTAVDLIAYSHMDNMKSP 1615
Query: 1607 AFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMS 1666
FLL EE+EPF+ I EE LK TLRHG+GYLHEGL+ DQE+V+ LFEAG+I+VCVMS
Sbjct: 1616 DFLLGNLEELEPFLIQICEETLKETLRHGIGYLHEGLSNLDQEIVTQLFEAGRIQVCVMS 1675
Query: 1667 SSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCH 1726
SS+CWG PL AHLVVVMGT +YDG+EN+H+DYP+++LLQMMG SRPLLD++GKCVI CH
Sbjct: 1676 SSLCWGTPLKAHLVVVMGTHFYDGRENSHSDYPISNLLQMMGRGSRPLLDDAGKCVIFCH 1735
Query: 1727 APRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQN 1786
APRKEYYKKFLY+A PVESHL HFLHDNFNAE+VA VIENKQDAVDYLTW+FMYRRL QN
Sbjct: 1736 APRKEYYKKFLYEALPVESHLQHFLHDNFNAEVVARVIENKQDAVDYLTWSFMYRRLPQN 1795
Query: 1787 PNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIAXXXXXXXX 1846
PNYYNL GVSHRHLSDHLSELVENT+SDLE SKCI I+ ++DLSP N GMIA
Sbjct: 1796 PNYYNLLGVSHRHLSDHLSELVENTLSDLEVSKCIEIDNELDLSPLNLGMIASYYYINYT 1855
Query: 1847 XXERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDP 1906
ERFSS L KT+MKGLLE+L SASEY +PIRPGEE+ VRRLI+HQRFSF+NP+ TDP
Sbjct: 1856 TIERFSSLLASKTKMKGLLEILTSASEYDLIPIRPGEEDAVRRLINHQRFSFQNPRCTDP 1915
Query: 1907 HVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQ 1966
VK +ALLQAHFSRQ++ GNL +DQ EVLLSA+RLLQAMVDVISSNG L+LALLAMEVSQ
Sbjct: 1916 RVKTSALLQAHFSRQKISGNLVMDQCEVLLSATRLLQAMVDVISSNGCLNLALLAMEVSQ 1975
Query: 1967 MVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQL 2026
MVTQGMW+RDSMLLQLPHF KDLAKRC ENPG +IET+FDLVEMEDD+R+ELLQMSD QL
Sbjct: 1976 MVTQGMWDRDSMLLQLPHFTKDLAKRCHENPGNNIETIFDLVEMEDDKRQELLQMSDAQL 2035
Query: 2027 LDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKE 2086
LDIARFCNRFPNID+++E+ S V G+DITLQV+LERD+EGRTEVGPV + RYPK KE
Sbjct: 2036 LDIARFCNRFPNIDLTYEIVGSNEVSPGKDITLQVLLERDMEGRTEVGPVDAPRYPKTKE 2095
Query: 2087 EGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEY 2146
EGWWLVVG+ KTNQL+AIKR+SLQRK++VKL+FA P E G+K+YTLYFMCDSY+GCDQEY
Sbjct: 2096 EGWWLVVGEAKTNQLMAIKRISLQRKAQVKLEFAVPTETGEKSYTLYFMCDSYLGCDQEY 2155
Query: 2147 AFTVDVKEA 2155
+FTVDVK++
Sbjct: 2156 SFTVDVKDS 2164
|
|
| UNIPROTKB|O75643 SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa helicase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 6020 (2124.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 1143/1898 (60%), Positives = 1465/1898 (77%)
Query: 260 LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFDK 318
L+ +DIDA+WLQR++S+ +D I QK A+EVL+IL DDRE EN+L+ L F+
Sbjct: 258 LHPRDIDAFWLQRQLSRFYDDAI---VSQKKADEVLEILKTASDDRECENQLVLLLGFNT 314
Query: 319 FSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKER 378
F IK L ++R+ +++CT LA AQ + E+++I +M P+L+ L QLH T KE
Sbjct: 315 FDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEA-DPELSKFLYQLHETE---KED 370
Query: 379 QKNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFM 438
E+S RE R+ + ++ L RQ+LDL+ L F QG FM
Sbjct: 371 LIREERSRRERVRQSRMDTDLETMDLDQGGEA-------LAPRQVLDLEDLVFTQGSHFM 423
Query: 439 ANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNR 498
AN++C LP+GS R KGYEE+HVPA+K KP E+L+ + ++P++AQ F+G LNR
Sbjct: 424 ANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNR 483
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+QS++Y++AL + +N+LLCAPTGAGKTNVA++ +L+++ + N DG+ N ++KI+Y+AP
Sbjct: 484 IQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAP 543
Query: 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDR 618
M++LV E+VG+ RL Y + V EL+GD L +++I TQIIV TPEKWDIITRK G+R
Sbjct: 544 MRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGER 603
Query: 619 TYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVAL 678
TYTQLV+ +RGPVLE++VAR +R IE T+E +RL+GLSATLPNYEDVA
Sbjct: 604 TYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVAT 663
Query: 679 FLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLI 738
FLRV+ KGLFYFDNS+RPVPL Q Y+GI KK ++RFQ+MN++ YEK++ AGK+QVL+
Sbjct: 664 FLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLV 723
Query: 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798
FVHSRKET KTARAIRD LE DTLG FL+E S S E+L++ + K+ +LKDLLPYGFA
Sbjct: 724 FVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFA 783
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
IHHAGMTR DR LVEDLF D H+QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTE
Sbjct: 784 IHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTE 843
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNA 918
L LDI+QMLGRAGRPQYD+ GEGI+IT H EL+YYLSL+NQQLPIESQ VSKL D LNA
Sbjct: 844 LGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNA 903
Query: 919 EIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATI 978
EIVLG VQNAK+A NW+GY YLYIRMLR+P LYG++ + LK D L +RR DLVHTAA +
Sbjct: 904 EIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALM 963
Query: 979 LDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEE 1038
LD+NNLVKYD+K+G FQVT+LGRIAS+YYI++ T+ TYN+ LKPT+ +IEL R+FSLS E
Sbjct: 964 LDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSE 1023
Query: 1039 FKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVF 1098
FK +TVR++EK+EL KLL+RVPIPVKES+EEPSAKINVLLQA+ISQLKLEG +L +DMV+
Sbjct: 1024 FKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVY 1083
Query: 1099 ITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 1158
+TQSAGRL+RA+FEIVL RGWAQL +K LNL KM+ KRMW PLRQF +P E++ K+
Sbjct: 1084 VTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKI 1143
Query: 1159 EKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELT 1218
EKK+F +ER YDL+ E+GELIR PKMG+T+HK+VH FPKL L+ H+QPITR+ LKVELT
Sbjct: 1144 EKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELT 1203
Query: 1219 ITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLP 1278
ITPDF WD+KVHG E FW++VED D E ILHHEYF+LK +Y +++H + F VP++EPLP
Sbjct: 1204 ITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLP 1263
Query: 1279 PQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQG 1338
PQYFIRVVSD+WL +T LPVSFRHLILPEKYPPPTELLDLQPLPV+ALRN +E+LYQ
Sbjct: 1264 PQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQD 1323
Query: 1339 -FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397
F FNPIQTQVF +YN+DDNV V APTGSGKTIC+EFAILR ++SE G R VYI
Sbjct: 1324 KFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSE-G--RCVYIT 1380
Query: 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK 1457
P+EALA++ Y DW KF L +VV LTGET+ DLKLL KG IIISTPEKWD LSRRWK
Sbjct: 1381 PMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK 1440
Query: 1458 QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDL 1517
QRK VQ ++LF++DE+HLIGG+ GPVLEVI SRMRYI+SQ+E IRIVALS+SL+NAKD+
Sbjct: 1441 QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV 1500
Query: 1518 GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPA 1577
W+G ++ FNF P VRPVPLE+HIQG +I++ + R+ +M KP + AI +H+ +KP
Sbjct: 1501 AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSP-KKPV 1559
Query: 1578 LVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637
+VFVPSRK RLTA+D++T + D Q+ FL +++ P+++ + + LK TL +GVG
Sbjct: 1560 IVFVPSRKQTRLTAIDILTTCAAD-IQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVG 1618
Query: 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD 1697
YLHEGL+ ++ +V LF +G I+V V S S+CWG+ + AHLV++M TQYY+G+ +A+ D
Sbjct: 1619 YLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVD 1678
Query: 1698 YPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNA 1757
YP+ D+LQM+GHA+RPL D+ G+CVI+C +K+++KKFLY+ PVESHL H +HD+FNA
Sbjct: 1679 YPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNA 1738
Query: 1758 EIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEA 1817
EIV IENKQDAVDYLTWTF+YRR+TQNPNYYNLQG+SHRHLSDHLSELVE T+SDLE
Sbjct: 1739 EIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQ 1798
Query: 1818 SKCIIIEEDMDLSPSNHGMIAXXXXXXXXXXERFSSSLTPKTRMKGLLEVLASASEYAQL 1877
SKCI IE++MD++P N GMIA E FS SL KT+++GL+E++++A+EY +
Sbjct: 1799 SKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENI 1858
Query: 1878 PIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLS 1937
PIR E+ ++R+L NPKF DPHVK N LLQAH SR Q+ L+ D EE+L
Sbjct: 1859 PIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSK 1918
Query: 1938 ASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENP 1997
A RL+QA VDV+SSNGWLS AL AME++QMVTQ MW +DS L QLPHF + KRC +
Sbjct: 1919 AIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTD-- 1976
Query: 1998 GKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDI 2057
K +E+VFD++EMED+ER LLQ++D Q+ D+ARFCNR+PNI++S+EV D +++R+G +
Sbjct: 1977 -KGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPV 2035
Query: 2058 TLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKL 2117
+ V LER+ E GPV + +P+ +EEGWW+V+GD K+N L++IKR++LQ+K++VKL
Sbjct: 2036 VVLVQLEREEE---VTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKL 2092
Query: 2118 DFAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVDVKEA 2155
DF APA G YTLYFM D+YMGCDQEY F+VDVKEA
Sbjct: 2093 DFVAPA-TGAHNYTLYFMSDAYMGCDQEYKFSVDVKEA 2129
|
|
| ZFIN|ZDB-GENE-081105-64 si:ch211-251j10.5 "si:ch211-251j10.5" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 6016 (2122.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 1139/1900 (59%), Positives = 1463/1900 (77%)
Query: 260 LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFDK 318
L+ +DIDA+WLQR++S+ ++ I QK A+EVL+IL DDRE EN+L+ L F+
Sbjct: 257 LHPRDIDAFWLQRQLSRFYNDAI---VSQKKADEVLEILKTASDDRECENQLVLLLGFNT 313
Query: 319 FSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKER 378
F IK L ++R +++CT LA AQ + E++KI +M DL+ +L QL T KE
Sbjct: 314 FDFIKVLRQHRRMILYCTMLASAQSEAEKEKIINKMEA-DQDLSKVLYQLQETE---KED 369
Query: 379 QKNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFM 438
E+S RE R+ + + + RQLLDL+ L F QG FM
Sbjct: 370 IIREERSRRERMRKSRVDDLESMDIDHGES---------VSSRQLLDLEDLTFTQGSHFM 420
Query: 439 ANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNR 498
AN++C LP+GS R KGYEE+HVPA+K KP E L+ I ++P++AQ F+G LNR
Sbjct: 421 ANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFGDEETLVGIEKLPKYAQAGFEGFKSLNR 480
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+QS+++K+ + + +N+L+CAPTGAGKTNVA++ +L+++ + N DG+ N +++KI+Y+AP
Sbjct: 481 IQSKLFKTTMETDENLLVCAPTGAGKTNVALMAMLREIGKHINMDGTINVADFKIIYIAP 540
Query: 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDR 618
M++LV E+VG+ RL Y + V EL+GD L +++I TQIIV TPEKWDIITRK G+R
Sbjct: 541 MRSLVQEMVGSFGKRLASYGIIVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGER 600
Query: 619 TYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVAL 678
TYTQLV+ +RGPVLES++ART+R +E T+E +RL+GLSATLPNYEDVA
Sbjct: 601 TYTQLVRLIIIDEIHLLHDDRGPVLESLIARTIRNVELTQEDVRLIGLSATLPNYEDVAT 660
Query: 679 FLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLI 738
LRV+ KGLFYFDNS+RPVPL Q Y+GI KK ++RFQ+MN++ YEK++ AGK+QVL+
Sbjct: 661 CLRVDPSKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLV 720
Query: 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798
FVHSRKET KTARAIRD LE DTLG FL+E S S E+L++ + K+ +LKDLLPYGFA
Sbjct: 721 FVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFA 780
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
IHHAGMTR DR LVEDLF D H+QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTE
Sbjct: 781 IHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTE 840
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNA 918
L LDI+QMLGRAGRPQYDS GEGI+IT H EL+YYLSL+NQQLPIESQ V KLAD LNA
Sbjct: 841 LGALDILQMLGRAGRPQYDSKGEGILITSHGELQYYLSLLNQQLPIESQMVGKLADMLNA 900
Query: 919 EIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATI 978
EIVLG VQNAK+A NW+GYTYLY+RMLRNP LYG++ + D L RR DLVHTAAT+
Sbjct: 901 EIVLGNVQNAKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSIDPLLERRRMDLVHTAATV 960
Query: 979 LDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEE 1038
L++NNLVKYD++SG FQVTDLGRIAS++YI+H +I TYN+ LKPT+ +IEL R+FSLS E
Sbjct: 961 LEKNNLVKYDKRSGSFQVTDLGRIASHFYITHESIMTYNQLLKPTLSEIELFRVFSLSSE 1020
Query: 1039 FKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVF 1098
F+ +TVR++EK+EL KLL+RVPIPVKES+EEPSAKINVLLQAYISQLKLEG +L +DMV+
Sbjct: 1021 FRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMVY 1080
Query: 1099 ITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 1158
+TQSAGRL+RA+FEIVL RGWAQL +K LNL KM+ KRMW +PLRQF +P E++ K+
Sbjct: 1081 VTQSAGRLMRAIFEIVLSRGWAQLTDKTLNLCKMIDKRMWQSMSPLRQFRKLPEEVIKKI 1140
Query: 1159 EKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELT 1218
EKK+F +ER YDL+ E+GELIR PKMG+T+HK+VHQFPKL LA H+QPITR+ LKVELT
Sbjct: 1141 EKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVELT 1200
Query: 1219 ITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLP 1278
ITPDF WDDK+HG E FW++VED D E +LHHEYF+LK +Y +++H + F VP++EPLP
Sbjct: 1201 ITPDFQWDDKIHGSSEAFWILVEDVDSEVVLHHEYFLLKAKYAQDEHLVTFFVPVFEPLP 1260
Query: 1279 PQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQG 1338
PQYFIR+ SD+WL +T LPVSFRHLILPEKYPPPTELLDLQPLPV+ALRN +E+LYQ
Sbjct: 1261 PQYFIRIASDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNGAFESLYQN 1320
Query: 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398
F FNPIQTQVF +YN+DDNV V APTGSGKTIC+EFAILR +E G R VYI P
Sbjct: 1321 FPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAE-G--RCVYITP 1377
Query: 1399 LEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQ 1458
+EALA++ + DW KF + L +VV LTGET+ DLKLL KG II+STP+KWD LSRRWKQ
Sbjct: 1378 MEALAEQVFLDWHQKFQENLNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQ 1437
Query: 1459 RKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLG 1518
RK VQ VSLFIIDE+HLIGG GPVLEVI SRMRYI+SQ+E IRIVALS+SL+NAKD+
Sbjct: 1438 RKNVQNVSLFIIDEVHLIGGDNGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVA 1497
Query: 1519 EWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPAL 1578
W+G ++ FNF P VRPVPLE+HIQG ++++ + R+ +M KP + AI++H+ + KP L
Sbjct: 1498 HWLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPS-KPVL 1556
Query: 1579 VFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGY 1638
VFVPSR+ RLTA+D++T+ + D + FL +++ PF++N+ + LK TL +GVGY
Sbjct: 1557 VFVPSRRQTRLTAIDILTFCAADVVPQR-FLHSTEKDLVPFMENLSDVTLKETLSNGVGY 1615
Query: 1639 LHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDY 1698
LHEGL+ T++ +V LF +G I+V V S S+CWG ++AHLV+VM TQYY+G+ +A+ DY
Sbjct: 1616 LHEGLSPTERRIVEHLFTSGAIQVVVASRSLCWGTNISAHLVIVMDTQYYNGKIHAYVDY 1675
Query: 1699 PVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAE 1758
P+ D+LQM+G A+RPL D+ G+CVI+C +K+++KKFLY+ PVESHL H LHD+FNAE
Sbjct: 1676 PIYDVLQMVGKANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAE 1735
Query: 1759 IVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEAS 1818
IV +ENKQDAVDYLTWTF+YRR+TQNPNYYNLQG+SHRHLSDHLSELVENT+ DLE S
Sbjct: 1736 IVTKTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLQDLEQS 1795
Query: 1819 KCIIIEEDMDLSPSNHGMIAXXXXXXXXXXERFSSSLTPKTRMKGLLEVLASASEYAQLP 1878
KCI IE++MD++P N GMIA E FS SL KT+++GL+E++++A+EY +P
Sbjct: 1796 KCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYKNIP 1855
Query: 1879 IRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSA 1938
IR E+ ++R+L NPKF DPHVK N LLQAH SR Q+ L+ D EE+L A
Sbjct: 1856 IRHHEDTLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKA 1915
Query: 1939 SRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPG 1998
RL+QA VDV+SSNGWLS AL AME++QMVTQ MW +DS L QLPHF +L KRC +
Sbjct: 1916 VRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLRQLPHFTSELIKRCTD--- 1972
Query: 1999 KSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDIT 2058
K +E++FD++EMED++R LLQ+SDVQ+ D+ARFCNR+PNI++S+EV D +++++G +
Sbjct: 1973 KGVESIFDIMEMEDEDRTGLLQLSDVQVADVARFCNRYPNIELSYEVVDKDDIKSGSPVV 2032
Query: 2059 LQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLD 2118
+QV LER+ E GPV + +P+ +EEGWW+V+GD K+N L++IKR++LQ+K++VKLD
Sbjct: 2033 VQVQLEREEE---VTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLD 2089
Query: 2119 FAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVDVKEAGEE 2158
F AP G YTLYFM D+YMGCDQEY F+ +VKEA E
Sbjct: 2090 FVAPV-VGVHNYTLYFMSDAYMGCDQEYKFSTEVKEADSE 2128
|
|
| UNIPROTKB|E1BH78 LOC100850262 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 6011 (2121.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 1139/1898 (60%), Positives = 1462/1898 (77%)
Query: 260 LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFDK 318
L+ +DIDA+WLQR++S+ +D I QK A+EVL+IL DDRE EN+L+ L F+
Sbjct: 258 LHPRDIDAFWLQRQLSRFYDDAI---VSQKKADEVLEILKTASDDRECENQLVLLLGFNT 314
Query: 319 FSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKER 378
F IK L ++R+ +++CT LA AQ + E+++I +M P+L+ L QLH T KE
Sbjct: 315 FDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEA-DPELSKFLYQLHETE---KED 370
Query: 379 QKNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFM 438
E+S RE R+ + ++ L RQ+LDL+ L F QG FM
Sbjct: 371 LIREERSRRERVRQSRMDTDLETMDLDQGGEA-------LAPRQVLDLEDLVFTQGSHFM 423
Query: 439 ANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNR 498
AN++C LP+GS R KGYEE+HVPA+K KP E+L+ + ++P++AQ F+G LNR
Sbjct: 424 ANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNR 483
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+QS++Y++AL + +N+LLCAPTGAGKTNVA++ +L+++ + N DG+ N ++KI+Y+AP
Sbjct: 484 IQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAP 543
Query: 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDR 618
M++LV E+VG+ RL Y + V EL+GD L +++I TQIIV TPEKWDIITRK G+R
Sbjct: 544 MRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGER 603
Query: 619 TYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVAL 678
TYTQLV+ +RGPVLE++VAR +R IE T+E +RL+GLSATLPNYEDVA
Sbjct: 604 TYTQLVRLVILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVAT 663
Query: 679 FLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLI 738
FLRV+ KGLFYFDNS+RPVPL Q Y+GI KK ++RFQ+MN++ YEK++ AGK+QVL+
Sbjct: 664 FLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLV 723
Query: 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798
FVHSRKET KTARAIRD LE DTLG FL+E S S E+L++ + K+ +LKDLLPYGFA
Sbjct: 724 FVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFA 783
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
IHHAGMTR DR LVEDLF D H+QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTE
Sbjct: 784 IHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTE 843
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNA 918
L LDI+QMLGRAGRPQYD+ GEGI+IT H EL+YYLSL+NQQLPIESQ VSKL D LNA
Sbjct: 844 LGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNA 903
Query: 919 EIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATI 978
E+VLG VQNAK+A NW+GY YLYIRMLR+P LYG++ + LK D L +RR DLVHTAA +
Sbjct: 904 EVVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALM 963
Query: 979 LDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEE 1038
LD+NNLVKYD+K+G FQVT+LGRIAS+YYI++ T+ TYN+ LKPT+ +IEL R+FSLS E
Sbjct: 964 LDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSE 1023
Query: 1039 FKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVF 1098
FK +TVR++EK+EL KLL+RVPIPVKES+EEPSAKINVLLQA+ISQLKLEG +L +DMV+
Sbjct: 1024 FKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVY 1083
Query: 1099 ITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 1158
+TQSAGRL+RA+FEIVL RGWAQL +K LNL KM+ KRMW PLRQF +P E++ K+
Sbjct: 1084 VTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKI 1143
Query: 1159 EKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELT 1218
EKK+F +ER YDL+ E+GELIR PKMG+T+HK+VH FPKL L+ H+QPITR+ LKVELT
Sbjct: 1144 EKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELT 1203
Query: 1219 ITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLP 1278
ITPDF WD+KVHG E FW++VED D E ILHHEYF+LK +Y +++H + F VP++EPLP
Sbjct: 1204 ITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLP 1263
Query: 1279 PQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQG 1338
PQYFIRVVSD+WL +T LPVSFRHLILPEKYPPPTELLDLQPLPV+ALRN +E+LYQ
Sbjct: 1264 PQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQD 1323
Query: 1339 -FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397
F FNPIQTQVF +YN+DDNV V APTGSGKTIC+EFAILR + SE G R VYI
Sbjct: 1324 KFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSE-G--RCVYIT 1380
Query: 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK 1457
P+EALA++ Y DW KF L +VV LTGET+ DLKLL KG +I+STPEKWD LSRRWK
Sbjct: 1381 PMEALAEQVYMDWYEKFQDRLSKKVVLLTGETSTDLKLLGKGSVIVSTPEKWDILSRRWK 1440
Query: 1458 QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDL 1517
QRK VQ ++LF++DE+HLIGG+ GPVLEVI SRMRYI+SQ+E IRIVALS+SL+NAKD+
Sbjct: 1441 QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV 1500
Query: 1518 GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPA 1577
W+G ++ FNF P VRPVPLE+HIQG +I++ + R+ +M KP + AI +H+ +KP
Sbjct: 1501 AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSP-KKPV 1559
Query: 1578 LVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637
+VFVPSRK RLTA+D++T + D Q+ FL +++ P+++ + + LK TL +GVG
Sbjct: 1560 IVFVPSRKQTRLTAIDILTTCAAD-IQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVG 1618
Query: 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD 1697
YLHEGL+ ++ +V LF +G I+V V S S+CWG+ + AHLV++M TQYY+G+ +A+ D
Sbjct: 1619 YLHEGLSPLERRLVEQLFSSGAIQVVVASRSLCWGLNVAAHLVIIMDTQYYNGKTHAYVD 1678
Query: 1698 YPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNA 1757
YP+ D+LQM+GHA+RPL D+ G+CVI+C +K+++KKFLY+ PVESHL H +HD+FNA
Sbjct: 1679 YPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNA 1738
Query: 1758 EIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEA 1817
EIV IENKQDAVDYLTWTF+YRR+TQNPNYYNLQG+SHRHLSDHLSELVE T+SDLE
Sbjct: 1739 EIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQ 1798
Query: 1818 SKCIIIEEDMDLSPSNHGMIAXXXXXXXXXXERFSSSLTPKTRMKGLLEVLASASEYAQL 1877
SKCI +E++MD++P N GMIA E FS SL KT+++GL+E++++A+EY +
Sbjct: 1799 SKCISVEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENI 1858
Query: 1878 PIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLS 1937
PIR E+ ++R+L NPKF DPHVK N LLQAH SR Q+ L+ D EE+L
Sbjct: 1859 PIRHHEDSLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSK 1918
Query: 1938 ASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENP 1997
A RL+QA VDV+SSNGWLS AL AME++QM TQ MW +DS L QLPHF + KRC +
Sbjct: 1919 AIRLIQACVDVLSSNGWLSPALAAMELAQMATQAMWSKDSYLKQLPHFTSEHIKRCTD-- 1976
Query: 1998 GKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDI 2057
K +E+VFD++EMED+ER LLQ+SD Q+ D+ARFCNR+PNI++S+EV D + +R+G +
Sbjct: 1977 -KGVESVFDIMEMEDEERNALLQLSDSQIADVARFCNRYPNIELSYEVVDKDAIRSGGPV 2035
Query: 2058 TLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKL 2117
+ V LER+ E GPV + +P+ +EEGWW+V+GD K+N L++IKR++LQ+K++VKL
Sbjct: 2036 VVLVQLEREEE---VTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKL 2092
Query: 2118 DFAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVDVKEA 2155
DF APA G YTLYFM D+YMGCDQEY F+VDVKEA
Sbjct: 2093 DFVAPA-TGAHNYTLYFMSDAYMGCDQEYKFSVDVKEA 2129
|
|
| UNIPROTKB|F1LNJ2 Ascc3l1 "Protein Ascc3l1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 6004 (2118.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 1143/1901 (60%), Positives = 1464/1901 (77%)
Query: 260 LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKIL-AEGDDREVENKLLYHLQFDK 318
L+ +DIDA+WLQR++S+ +D I QK A+EVL+IL DDRE EN+L+ L F+
Sbjct: 258 LHPRDIDAFWLQRQLSRFYDDAI---VSQKKADEVLEILKTASDDRECENQLVLLLGFNT 314
Query: 319 FSLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKER 378
F IK L ++R+ +++CT LA AQ + E+++I +M P+L+ L QLH T KE
Sbjct: 315 FDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEA-DPELSKFLYQLHETE---KED 370
Query: 379 QKNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFM 438
E+S RE R+ + ++ L RQ+LDL+ L F QG FM
Sbjct: 371 LIREERSRRERVRQSRMDTDLETMDLDQGGEA-------LAPRQVLDLEDLVFTQGSHFM 423
Query: 439 ANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNR 498
AN++C LP+GS R KGYEE+HVPA+K KP E+L+ + ++P++AQ F+G LNR
Sbjct: 424 ANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLNR 483
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+QS++Y++AL + +N+LLCAPTGAGKTNVA++ +L+++ + N DG+ N ++KI+Y+AP
Sbjct: 484 IQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAP 543
Query: 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDR 618
M++LV E+VG+ RL Y + V EL+GD L +++I TQIIV TPEKWDIITRK G+R
Sbjct: 544 MRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGER 603
Query: 619 TYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVAL 678
TYTQLV+ +RGPVLE++VAR +R IE T+E +RL+GLSATLPNYEDVA
Sbjct: 604 TYTQLVRLIVLDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVAT 663
Query: 679 FLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLI 738
FLRV+ KGLFYFDNS+RPVPL Q Y+GI KK ++RFQ+MN++ YEK++ AGK+QVL+
Sbjct: 664 FLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLV 723
Query: 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798
FVHSRKET KTARAIRD LE DTLG FL+E S S E+L++ + K+ +LKDLLPYGFA
Sbjct: 724 FVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFA 783
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
IHHAGMTR DR LVEDLF D H+QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTE
Sbjct: 784 IHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTE 843
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNA 918
L LDI+QMLGRAGRPQYD+ GEGI+IT H EL+YYLSL+NQQLPIESQ VSKL D LNA
Sbjct: 844 LGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNA 903
Query: 919 EIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATI 978
EIVLG VQNAK+A NW+GY YLYIRMLR+P LYG++ + LK D L +RR DLVHTAA +
Sbjct: 904 EIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALM 963
Query: 979 LDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEE 1038
LD+NNLVKYD+K+G FQVT+LGRIAS+YYI++ T+ TYN+ LKPT+ +IEL R+FSLS E
Sbjct: 964 LDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSE 1023
Query: 1039 FKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVF 1098
FK +TVR++EK+EL KLL+RVPIPVKES+EEPSAKINVLLQA+ISQLKLEG +L +DMV+
Sbjct: 1024 FKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVY 1083
Query: 1099 ITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 1158
+TQSAGRL+RA+FEIVL RGWAQL +K LNL KM+ KRMW PLRQF +P E++ K+
Sbjct: 1084 VTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVVKKI 1143
Query: 1159 EKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELT 1218
EKK+F +ER YDL+ E+GELIR PKMG+T+HK+VH FPKL L+ H+QPITR+ LKVELT
Sbjct: 1144 EKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVELT 1203
Query: 1219 ITPDFLWDDK---VHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYE 1275
ITPDF WD+K VHG E FW++VED D E ILHHEYF+LK +Y +++H + F VP++E
Sbjct: 1204 ITPDFQWDEKARLVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE 1263
Query: 1276 PLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEAL 1335
PLPPQYFIRVVSD+WL +T LPVSFRHLILPEKYPPPTELLDLQPLPV+ALRN +E+L
Sbjct: 1264 PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL 1323
Query: 1336 YQG-FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAV 1394
YQ F FNPIQTQVF +YN+DDNV V APTGSGKTIC+EFAILR + SE G R V
Sbjct: 1324 YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSE-G--RCV 1380
Query: 1395 YIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSR 1454
YI P+EALA++ Y DW KF L +VV LTGET+ DLKLL KG IIISTPEKWD LSR
Sbjct: 1381 YITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSR 1440
Query: 1455 RWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514
RWKQRK VQ ++LF++DE+HLIGG+ GPVLEVI SRMRYI+SQ+E IRIVALS+SL+NA
Sbjct: 1441 RWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA 1500
Query: 1515 KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNE 1574
KD+ W+G ++ FNF P VRPVPLE+HIQG +I++ + R+ +M KP + AI +H+ +
Sbjct: 1501 KDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSP-K 1559
Query: 1575 KPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634
KP +VFVPSRK RLTA+D++T + D Q+ FL +++ P+++ + + LK TL +
Sbjct: 1560 KPVIVFVPSRKQTRLTAIDILTTCAAD-IQRQRFLHCTEKDLIPYLEKLSDSTLKETLLN 1618
Query: 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENA 1694
GVGYLHEGL+ ++ +V LF +G I+V V S S+CWG+ + AHLV++M TQYY+G+ +A
Sbjct: 1619 GVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHA 1678
Query: 1695 HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDN 1754
+ DYP+ D+LQM+GHA+RPL D+ G+CVI+C +K+++KKFLY+ PVESHL H +HD+
Sbjct: 1679 YVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDH 1738
Query: 1755 FNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISD 1814
FNAEIV IENKQDAVDYLTWTF+YRR+TQNPNYYNLQG+SHRHLSDHLSELVE T+SD
Sbjct: 1739 FNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSD 1798
Query: 1815 LEASKCIIIEEDMDLSPSNHGMIAXXXXXXXXXXERFSSSLTPKTRMKGLLEVLASASEY 1874
LE SKCI IE++MD++P N GMIA E FS SL KT+++GL+E++++A+EY
Sbjct: 1799 LEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEY 1858
Query: 1875 AQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEV 1934
+PIR E+ ++R+L NPKF DPHVK N LLQAH SR Q+ L+ D EE+
Sbjct: 1859 ENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEI 1918
Query: 1935 LLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQ 1994
L A RL+QA VDV+SSNGWLS AL AME++QMVTQ MW +DS L QLPHF + KRC
Sbjct: 1919 LSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCT 1978
Query: 1995 ENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAG 2054
+ K +E+VFD++EMED+ER LLQ++D Q+ D+ARFCNR+PNI++S+EV D +++R+G
Sbjct: 1979 D---KGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSG 2035
Query: 2055 EDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSR 2114
+ + V LER+ E GPV + +P+ +EEGWW+V+GD K+N L++IKR++LQ+K++
Sbjct: 2036 GPVVVLVQLEREEE---VTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAK 2092
Query: 2115 VKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVDVKEA 2155
VKLDF APA G YTLYFM D+YMGCDQEY F+VDVKEA
Sbjct: 2093 VKLDFVAPATGGHN-YTLYFMSDAYMGCDQEYKFSVDVKEA 2132
|
|
| FB|FBgn0263599 l(3)72Ab "lethal (3) 72Ab" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 5831 (2057.7 bits), Expect = 0., Sum P(3) = 0.
Identities = 1104/1883 (58%), Positives = 1434/1883 (76%)
Query: 283 DPQQCQKLAEEVLKILAEG-DDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARA 341
D Q A +VLKIL + DDR+ EN+L+ L +D F IK L NR V++CT LA A
Sbjct: 283 DAMVSQSKAADVLKILKDAADDRDCENQLVLLLGYDCFDFIKQLKLNRQMVLYCTMLASA 342
Query: 342 QDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASXX 401
Q ER++I E+M G LA IL QL T K + E+ ++R K ++
Sbjct: 343 QTDSERQRIREKMRG-NSALAKILRQLD----TGKSEDQ--EEGEARGSKRGKGDAEDGG 395
Query: 402 XXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIH 461
G RQLL+L+ +AF QG FMAN++C LP+GS R KGYEE+H
Sbjct: 396 AAAAGQVA---------GVRQLLELEEMAFTQGSHFMANKRCQLPDGSYRKQRKGYEEVH 446
Query: 462 VPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTG 521
VPA+K P D NE+L + ++P++ QP F+G LNR+QSR+YK+AL S +N+LLCAPTG
Sbjct: 447 VPALKPVPFDANEELQPVDKLPKYVQPVFEGFKTLNRIQSRLYKAALDSDENMLLCAPTG 506
Query: 522 AGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581
AGKTNVA+LT+++++ + N+DG+ N ++KI+YVAPMK+LV E+VGN RL Y++ V
Sbjct: 507 AGKTNVALLTMMREIGKHINEDGTINAQDFKIIYVAPMKSLVQEMVGNFGRRLACYNLTV 566
Query: 582 RELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGP 641
EL+GD LTR+QI TQ+IV TPEKWDIITRK G+RT+ LV+ RGP
Sbjct: 567 SELTGDHQLTREQIAATQVIVCTPEKWDIITRKGGERTFVSLVRLVIIDEIHLLHDERGP 626
Query: 642 VLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLS 701
VLE++VART+R IETT+E +RLVGLSATLPNY+DVA FLRV +KGLFYFDNSYRPV L
Sbjct: 627 VLEALVARTIRNIETTQEEVRLVGLSATLPNYQDVATFLRVKPDKGLFYFDNSYRPVSLE 686
Query: 702 QQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEND 761
QQYIG+ KK L+RFQ+MN++ YEK + AG++QVL+FVHSRKET KTARA+RD LE D
Sbjct: 687 QQYIGVTEKKALKRFQVMNEIVYEKTMEHAGRNQVLVFVHSRKETGKTARAVRDMCLEQD 746
Query: 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821
TLG FLKE S S E+L++ + VK+ +LK+LLPYGFAIHHAGMTR DR LVEDLF D H+
Sbjct: 747 TLGSFLKEGSASMEVLRTEAEQVKNTELKELLPYGFAIHHAGMTRVDRTLVEDLFADRHI 806
Query: 822 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881
QVLVSTATLAWGVNLPAHTVIIKGTQ+YNPEKG W ELS LD++QMLGRAGRPQYD+ GE
Sbjct: 807 QVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGE 866
Query: 882 GIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941
GI+IT HSEL++YLSL+NQQLPIESQF+SKL D LNAEIVLGTVQ+ ++A NW+GYTYLY
Sbjct: 867 GILITNHSELQFYLSLLNQQLPIESQFISKLPDMLNAEIVLGTVQHLQDAVNWLGYTYLY 926
Query: 942 IRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGR 1001
IRMLRNP LYG++ + +K D L + RADL+HTAA L+R+ L+KYDRK+G+FQVTDLGR
Sbjct: 927 IRMLRNPTLYGVSHDAIKADPLLEQHRADLLHTAACCLERSGLIKYDRKTGHFQVTDLGR 986
Query: 1002 IASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPI 1061
IAS+YY++H T+ TYN+ LK T+ +IEL R+FSLS EF++++VR++EK+EL KL++RVPI
Sbjct: 987 IASHYYLTHETMLTYNQLLKQTLSEIELFRVFSLSSEFRHISVREEEKLELQKLMERVPI 1046
Query: 1062 PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQ 1121
P+KES+EE SAK+NVLLQAYISQLKLEG +L SDMVFITQSA RL+RA+FEIVL RGWAQ
Sbjct: 1047 PIKESIEEHSAKVNVLLQAYISQLKLEGFALMSDMVFITQSAARLMRAIFEIVLTRGWAQ 1106
Query: 1122 LAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIR 1181
LA+K L L KM+ +RMW TPLRQF +P+EI KLEKK F W R YDL P ELGELIR
Sbjct: 1107 LADKTLTLCKMIDRRMWQSMTPLRQFKKMPDEIAKKLEKKHFPWGRLYDLEPHELGELIR 1166
Query: 1182 FPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVE 1241
PK+G+T+HKFVHQFPKL L+ H+QPITR L+VELTITPDF WD+KVHG E FWV++E
Sbjct: 1167 VPKLGKTIHKFVHQFPKLELSTHIQPITRGTLRVELTITPDFQWDEKVHGQSEGFWVLIE 1226
Query: 1242 DNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF 1301
D D E ILHHE+F+LK++Y +++H L F VP++EPLPPQYF+R+VSD+W+G++T LPVSF
Sbjct: 1227 DVDSELILHHEFFLLKQKYSQDEHQLKFFVPVFEPLPPQYFLRIVSDRWIGAETQLPVSF 1286
Query: 1302 RHLILPEKYPPPTELLDLQPLPVTALRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNV 1360
RHLILPEK PPTELLDLQPLP++ALR P +E+ Y Q F FNPIQTQVF +YN+D+NV
Sbjct: 1287 RHLILPEKNMPPTELLDLQPLPISALRQPKFESFYSQRFPQFNPIQTQVFNAVYNSDENV 1346
Query: 1361 LVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420
V APTGSGK +EFAI+R S+ R VY+ EALA + DW KFG L +
Sbjct: 1347 FVGAPTGSGKMTIAEFAIMRLFTTQSDA---RCVYLVSEEALADLVFADWHSKFGS-LDI 1402
Query: 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480
+VV+LTGET DLKL+ KGQ++I+T +KWD LSRRWKQRK VQ V+LFI+DEL L+GG+
Sbjct: 1403 KVVKLTGETGTDLKLIAKGQLVITTADKWDVLSRRWKQRKNVQLVNLFIVDELQLVGGEE 1462
Query: 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPL 1540
GPVLE++ SRMRYI+SQ+E +IRIVALS SL +A+D+ +W+G + FNF P VRP+PL
Sbjct: 1463 GPVLEIVCSRMRYISSQIEKQIRIVALSASLTDARDVAQWLGCNPNATFNFHPSVRPIPL 1522
Query: 1541 EIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSM 1600
E+HIQG ++T+ R+ M+KP + AI++++ + KP +VFV SRK RLTA+D++TY++
Sbjct: 1523 ELHIQGYNVTHNATRIATMSKPVYNAILKYSAH-KPVIVFVSSRKQARLTAIDVLTYAAS 1581
Query: 1601 DGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKI 1660
D Q + F E+++PF++ + ++ LK TL GV YLHEGL+ +D +V LF++G +
Sbjct: 1582 DL-QPNRFFHAEEEDIKPFLERMTDKTLKETLAQGVAYLHEGLSASDHRLVEQLFDSGAV 1640
Query: 1661 KVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720
+V V+S +CWG+ ++AHLV++M TQ+Y+G+ +++ DYP+TD+LQM+G A+RP D K
Sbjct: 1641 QVAVISRDLCWGMSISAHLVIIMDTQFYNGKNHSYEDYPITDVLQMIGRANRPNEDADAK 1700
Query: 1721 CVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMY 1780
CV++C + +K+++KKF+ + P+ESHL H +HD+FNAE+V IENKQDAVDYLTWTF+Y
Sbjct: 1701 CVLMCQSSKKDFFKKFINEPLPIESHLDHRMHDHFNAEVVTKTIENKQDAVDYLTWTFLY 1760
Query: 1781 RRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIAXX 1840
RRLTQNPNYYNLQGV+HRHLSDHLSELVENT+SDLE SKCI +E+DMD P N GMIA
Sbjct: 1761 RRLTQNPNYYNLQGVTHRHLSDHLSELVENTLSDLEQSKCISVEDDMDTLPLNLGMIAAY 1820
Query: 1841 XXXXXXXXERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHH--QRFSF 1898
E FS SL KT+++GLLE+++SA+EY + +R EE+V+R L + +
Sbjct: 1821 YYINYTTIELFSLSLNSKTKVRGLLEIISSAAEYEDVVVRHHEEQVLRTLSQRLPNKLTG 1880
Query: 1899 EN---PKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWL 1955
N PKF DPH+K N LLQAH SR Q+G L+ D E++L A RL+QA VDV+SSNGWL
Sbjct: 1881 PNETAPKFNDPHIKTNLLLQAHLSRLQLGPELQGDTEQILSKAIRLIQACVDVLSSNGWL 1940
Query: 1956 SLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDER 2015
S A+ AME++QMVTQ MW +DS L QLPHF ++ KRC E K IETVFD++E+ED++R
Sbjct: 1941 SPAVAAMELAQMVTQAMWSKDSYLKQLPHFSPEIVKRCTE---KKIETVFDIMELEDEDR 1997
Query: 2016 RELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGP 2075
LLQ+SD+Q+ D+ARFCNR+PNI++++EV D + + +G + + V LER+ E GP
Sbjct: 1998 TRLLQLSDLQMADVARFCNRYPNIELNYEVVDKDRINSGSTVNVVVQLEREDE---VTGP 2054
Query: 2076 VYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFM 2135
V + +P+ +EEGWW+V+GD KTN LL+IKR++LQ+K++VKLDF AP+ GK YTLY+M
Sbjct: 2055 VIAPFFPQKREEGWWVVIGDPKTNSLLSIKRLTLQQKAKVKLDFVAPSP-GKHDYTLYYM 2113
Query: 2136 CDSYMGCDQEYAFTVDVKEAGEE 2158
DSY+GCDQEY F+++V + E
Sbjct: 2114 SDSYLGCDQEYKFSIEVGDFQSE 2136
|
|
| WB|WBGene00012896 snrp-200 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 5223 (1843.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 1001/1881 (53%), Positives = 1353/1881 (71%)
Query: 283 DPQQCQKLAEEVLKILAEG-DDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARA 341
DP Q+ EV+ IL DDR+ EN+L+ L FD+F IK L +NRL +++CT L +A
Sbjct: 275 DPLIAQQKQTEVIGILKNAADDRDAENQLVLLLGFDQFEFIKCLRQNRLMILYCTLLRQA 334
Query: 342 QDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASXX 401
+++ER +IE++M P+L IL L T + + +EKS R+ + K +A+
Sbjct: 335 -NEKERLQIEDDMRSR-PELHPILALLQETDEGSVVQ---VEKSKRDAEKSKKAATAANE 389
Query: 402 XXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIH 461
W R++LDL+ L F QG M+N++C+LP+GS R K YEEIH
Sbjct: 390 AISAGQ---------WQAGRKMLDLNDLTFSQGSHLMSNKRCELPDGSYRRQKKSYEEIH 440
Query: 462 VPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTG 521
VPA+K +P EKL+ +SE+P+WAQPAF G LNR+QSR+ SAL S +++LLCAPTG
Sbjct: 441 VPALKPRPFAEGEKLVSVSELPKWAQPAFDGYKSLNRIQSRLCDSALRSKEHLLLCAPTG 500
Query: 522 AGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581
AGKTNVA+LT+LQ++ + +DGS +KIVY+APMK+LV E+VG+ S RL + + V
Sbjct: 501 AGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQEMVGSFSKRLAPFGITV 560
Query: 582 RELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGP 641
E++GD ++++Q TQ+IV TPEK+D++TRK G+R Y Q+V+ +RGP
Sbjct: 561 GEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYNQMVRLLIIDEIHLLHDDRGP 620
Query: 642 VLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLS 701
VLESIV RT+RQ+E + RLVGLSATLPNY+DVA FLRV E L +FDNSYRPVPL
Sbjct: 621 VLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATFLRVKPEH-LHFFDNSYRPVPLE 679
Query: 702 QQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEND 761
QQYIG+ KK L+RFQ MN++ Y+K++ AGK QVL+FVHSRKETAKTA+AIRD LE D
Sbjct: 680 QQYIGVTEKKALKRFQAMNEVVYDKIMEHAGKSQVLVFVHSRKETAKTAKAIRDACLEKD 739
Query: 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821
TL F++E S S EIL++ + K+ DLKDLLPYGFAIHHAGM R DR LVEDLF D H+
Sbjct: 740 TLSAFMREGSASTEILRTEAEQAKNLDLKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHI 799
Query: 822 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881
QVL STATLAWGVNLPAHTVIIKGTQIYNPEKG WTEL LDIMQMLGRAGRPQYD GE
Sbjct: 800 QVLFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGE 859
Query: 882 GIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941
GI+IT HSEL+YYLSLMNQQLP+ESQ VS+L D LNAE+VLGTV + EA NW+GYT+L+
Sbjct: 860 GILITNHSELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLF 919
Query: 942 IRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGR 1001
+RML+NP LYG+ E + D L +RRADL+HTA +LD+ L+KYD++SG Q T+LGR
Sbjct: 920 VRMLKNPTLYGITHEQARADPLLEQRRADLIHTACVLLDKAGLIKYDKRSGIIQATELGR 979
Query: 1002 IASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPI 1061
IAS++Y ++ ++ TYN+ L T DI+L R+FS+S EFK ++VR +EK+EL K+ + PI
Sbjct: 980 IASHFYCTYESMQTYNKLLVETCSDIDLFRIFSMSSEFKLLSVRDEEKLELQKMAEHAPI 1039
Query: 1062 PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQ 1121
P+KE+L+E SAK NVLLQAYISQLKLEG +L +DMVF+ QSAGRL RALFEIVL RGWA
Sbjct: 1040 PIKENLDEASAKTNVLLQAYISQLKLEGFALQADMVFVAQSAGRLFRALFEIVLWRGWAG 1099
Query: 1122 LAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIR 1181
LA+K L L KMVT+R W PL QF IP+E++ ++KK+++++R YDL +LG+LI+
Sbjct: 1100 LAQKVLTLCKMVTQRQWGSLNPLHQFKKIPSEVVRSIDKKNYSFDRLYDLDQHQLGDLIK 1159
Query: 1182 FPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVE 1241
PKMG+ L KF+ QFPKL + +QPITRT +++ELTITPDF WD+KVHG E FW+ +E
Sbjct: 1160 MPKMGKPLFKFIRQFPKLEMTTLIQPITRTTMRIELTITPDFKWDEKVHGSAEGFWIFIE 1219
Query: 1242 DNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF 1301
D DGE ILHHE+F+LK+++ ++H + VP+++P+PP Y++R+VSD+W+G++TVLP+SF
Sbjct: 1220 DTDGEKILHHEFFLLKQKFCSDEHVVKMIVPMFDPMPPLYYVRIVSDRWIGAETVLPISF 1279
Query: 1302 RHLILPEKYPPPTELLDLQPLPVTALRNPLYEALY--QGFKHFNPIQTQVFTVLYNTDDN 1359
RHLILPEKYPPPTELLDLQPLP++A+ N ++ ++ GFK FNPIQTQVF ++ +++N
Sbjct: 1280 RHLILPEKYPPPTELLDLQPLPISAVTNKEFQTVFAESGFKVFNPIQTQVFRTVFESNEN 1339
Query: 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419
V+V AP GSGKT +E A+LR+ + E +AVYI P+E +A + Y DW+ + +G
Sbjct: 1340 VIVCAPNGSGKTAIAELAVLRHFENTPEA---KAVYITPMEDMATKVYADWKRRLEPAIG 1396
Query: 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479
+V LTGE MDLKL ++GQ+IISTPE+WD +SRRWKQRK VQ V LFI D+LH+IG
Sbjct: 1397 HTIVLLTGEQTMDLKLAQRGQLIISTPERWDNISRRWKQRKSVQNVKLFIADDLHMIGAS 1456
Query: 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVP 1539
G V EV+ SR RYI+SQ+E+ +R+VALS+SL NA+DLG W+G ++ FNF P RPVP
Sbjct: 1457 NGAVFEVVCSRTRYISSQLESAVRVVALSSSLTNARDLGMWLGCSASATFNFMPSTRPVP 1516
Query: 1540 LEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNE-KPALVFVPSRKYVRLTAVDLMTY 1597
L++ I+ ++++ +R AM +P + AI +HA K E KPALVFVP R+ R AV L+T
Sbjct: 1517 LDLEIKSFNLSHNASRFAAMERPVYQAICRHAGKLEPKPALVFVPVRRQTRPVAVALLTM 1576
Query: 1598 SSMDGDQKSAFLLWPAEEV-EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFE 1656
+ DG K L ++ + + +I++E L+ ++ GVG+LHEG D +V LFE
Sbjct: 1577 ALADGAPKRFLRLAEHDDTFQALLADIEDESLRESVSCGVGFLHEGTAPKDVHIVQQLFE 1636
Query: 1657 AGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD 1716
+ I+VCV+ MC+ + ++A+LVVVM TQ+Y+G+ + + DYP+ D+L M+G A+RP+LD
Sbjct: 1637 SNAIQVCVVPRGMCYQIEMSAYLVVVMDTQFYNGKYHVYEDYPIADMLHMVGLANRPILD 1696
Query: 1717 NSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTW 1776
+ KCV++C ++ YYKKFL D PVESHL H LHD+FNAEIV IENKQDA+DYLTW
Sbjct: 1697 SDAKCVVMCQTSKRAYYKKFLCDPLPVESHLDHCLHDHFNAEIVTKTIENKQDAIDYLTW 1756
Query: 1777 TFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGM 1836
T +YRR+TQNPNYYNLQG +HRHLSD LSELVE T+ DLE SKCI ++++MD N GM
Sbjct: 1757 TLLYRRMTQNPNYYNLQGTTHRHLSDALSELVELTLKDLENSKCIAVKDEMDTVSLNLGM 1816
Query: 1837 IAXXXXXXXXXXERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRF 1896
IA E FS SL KT+ + L+E+++++SE+ +P+R E+ ++R+L
Sbjct: 1817 IASYYYISYQTIELFSMSLKEKTKTRALIEIISASSEFGNVPMRHKEDVILRQLAERLPG 1876
Query: 1897 SFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLS 1956
+N KFTDPHVK N L+ AH SR ++ L D E ++L A RL+QA VDV+SSNGWLS
Sbjct: 1877 QLKNQKFTDPHVKVNLLIHAHLSRVKLTAELNKDTELIVLRACRLVQACVDVLSSNGWLS 1936
Query: 1957 LALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERR 2016
A+ AME+SQM+TQ M+ + L QLPH L +R + K + +VF+L+E+E+D+R
Sbjct: 1937 PAIHAMELSQMLTQAMYSNEPYLKQLPHCSAALLERAK---AKEVTSVFELLELENDDRS 1993
Query: 2017 ELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPV 2076
++LQM +L D+ARFCN +P+I+++ E+++ + V + +++ L V LERD + PV
Sbjct: 1994 DILQMEGAELADVARFCNHYPSIEVATELEN-DVVTSNDNLMLAVSLERDNDIDGLAPPV 2052
Query: 2077 YSNRYP-KAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFM 2135
+ +P K KEEGWWLV+GD+++N LL IKR+ + KS V+LDFAAP G + L+F+
Sbjct: 2053 VAPLFPQKRKEEGWWLVIGDSESNALLTIKRLVINEKSSVQLDFAAP-RPGHHKFKLFFI 2111
Query: 2136 CDSYMGCDQEYAFTVDVKEAG 2156
DSY+G DQE+ V+E G
Sbjct: 2112 SDSYLGADQEFDVAFKVEEPG 2132
|
|
| UNIPROTKB|Q9U2G0 Y46G5A.4 "Putative U5 small nuclear ribonucleoprotein 200 kDa helicase" [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 5223 (1843.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 1001/1881 (53%), Positives = 1353/1881 (71%)
Query: 283 DPQQCQKLAEEVLKILAEG-DDREVENKLLYHLQFDKFSLIKFLLRNRLKVVWCTRLARA 341
DP Q+ EV+ IL DDR+ EN+L+ L FD+F IK L +NRL +++CT L +A
Sbjct: 275 DPLIAQQKQTEVIGILKNAADDRDAENQLVLLLGFDQFEFIKCLRQNRLMILYCTLLRQA 334
Query: 342 QDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASXX 401
+++ER +IE++M P+L IL L T + + +EKS R+ + K +A+
Sbjct: 335 -NEKERLQIEDDMRSR-PELHPILALLQETDEGSVVQ---VEKSKRDAEKSKKAATAANE 389
Query: 402 XXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIH 461
W R++LDL+ L F QG M+N++C+LP+GS R K YEEIH
Sbjct: 390 AISAGQ---------WQAGRKMLDLNDLTFSQGSHLMSNKRCELPDGSYRRQKKSYEEIH 440
Query: 462 VPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTG 521
VPA+K +P EKL+ +SE+P+WAQPAF G LNR+QSR+ SAL S +++LLCAPTG
Sbjct: 441 VPALKPRPFAEGEKLVSVSELPKWAQPAFDGYKSLNRIQSRLCDSALRSKEHLLLCAPTG 500
Query: 522 AGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581
AGKTNVA+LT+LQ++ + +DGS +KIVY+APMK+LV E+VG+ S RL + + V
Sbjct: 501 AGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQEMVGSFSKRLAPFGITV 560
Query: 582 RELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKXXXXXXXXXXXXNRGP 641
E++GD ++++Q TQ+IV TPEK+D++TRK G+R Y Q+V+ +RGP
Sbjct: 561 GEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYNQMVRLLIIDEIHLLHDDRGP 620
Query: 642 VLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLS 701
VLESIV RT+RQ+E + RLVGLSATLPNY+DVA FLRV E L +FDNSYRPVPL
Sbjct: 621 VLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATFLRVKPEH-LHFFDNSYRPVPLE 679
Query: 702 QQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEND 761
QQYIG+ KK L+RFQ MN++ Y+K++ AGK QVL+FVHSRKETAKTA+AIRD LE D
Sbjct: 680 QQYIGVTEKKALKRFQAMNEVVYDKIMEHAGKSQVLVFVHSRKETAKTAKAIRDACLEKD 739
Query: 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821
TL F++E S S EIL++ + K+ DLKDLLPYGFAIHHAGM R DR LVEDLF D H+
Sbjct: 740 TLSAFMREGSASTEILRTEAEQAKNLDLKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHI 799
Query: 822 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881
QVL STATLAWGVNLPAHTVIIKGTQIYNPEKG WTEL LDIMQMLGRAGRPQYD GE
Sbjct: 800 QVLFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGE 859
Query: 882 GIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941
GI+IT HSEL+YYLSLMNQQLP+ESQ VS+L D LNAE+VLGTV + EA NW+GYT+L+
Sbjct: 860 GILITNHSELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLF 919
Query: 942 IRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGR 1001
+RML+NP LYG+ E + D L +RRADL+HTA +LD+ L+KYD++SG Q T+LGR
Sbjct: 920 VRMLKNPTLYGITHEQARADPLLEQRRADLIHTACVLLDKAGLIKYDKRSGIIQATELGR 979
Query: 1002 IASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPI 1061
IAS++Y ++ ++ TYN+ L T DI+L R+FS+S EFK ++VR +EK+EL K+ + PI
Sbjct: 980 IASHFYCTYESMQTYNKLLVETCSDIDLFRIFSMSSEFKLLSVRDEEKLELQKMAEHAPI 1039
Query: 1062 PVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQ 1121
P+KE+L+E SAK NVLLQAYISQLKLEG +L +DMVF+ QSAGRL RALFEIVL RGWA
Sbjct: 1040 PIKENLDEASAKTNVLLQAYISQLKLEGFALQADMVFVAQSAGRLFRALFEIVLWRGWAG 1099
Query: 1122 LAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIR 1181
LA+K L L KMVT+R W PL QF IP+E++ ++KK+++++R YDL +LG+LI+
Sbjct: 1100 LAQKVLTLCKMVTQRQWGSLNPLHQFKKIPSEVVRSIDKKNYSFDRLYDLDQHQLGDLIK 1159
Query: 1182 FPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVE 1241
PKMG+ L KF+ QFPKL + +QPITRT +++ELTITPDF WD+KVHG E FW+ +E
Sbjct: 1160 MPKMGKPLFKFIRQFPKLEMTTLIQPITRTTMRIELTITPDFKWDEKVHGSAEGFWIFIE 1219
Query: 1242 DNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF 1301
D DGE ILHHE+F+LK+++ ++H + VP+++P+PP Y++R+VSD+W+G++TVLP+SF
Sbjct: 1220 DTDGEKILHHEFFLLKQKFCSDEHVVKMIVPMFDPMPPLYYVRIVSDRWIGAETVLPISF 1279
Query: 1302 RHLILPEKYPPPTELLDLQPLPVTALRNPLYEALY--QGFKHFNPIQTQVFTVLYNTDDN 1359
RHLILPEKYPPPTELLDLQPLP++A+ N ++ ++ GFK FNPIQTQVF ++ +++N
Sbjct: 1280 RHLILPEKYPPPTELLDLQPLPISAVTNKEFQTVFAESGFKVFNPIQTQVFRTVFESNEN 1339
Query: 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419
V+V AP GSGKT +E A+LR+ + E +AVYI P+E +A + Y DW+ + +G
Sbjct: 1340 VIVCAPNGSGKTAIAELAVLRHFENTPEA---KAVYITPMEDMATKVYADWKRRLEPAIG 1396
Query: 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479
+V LTGE MDLKL ++GQ+IISTPE+WD +SRRWKQRK VQ V LFI D+LH+IG
Sbjct: 1397 HTIVLLTGEQTMDLKLAQRGQLIISTPERWDNISRRWKQRKSVQNVKLFIADDLHMIGAS 1456
Query: 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVP 1539
G V EV+ SR RYI+SQ+E+ +R+VALS+SL NA+DLG W+G ++ FNF P RPVP
Sbjct: 1457 NGAVFEVVCSRTRYISSQLESAVRVVALSSSLTNARDLGMWLGCSASATFNFMPSTRPVP 1516
Query: 1540 LEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNE-KPALVFVPSRKYVRLTAVDLMTY 1597
L++ I+ ++++ +R AM +P + AI +HA K E KPALVFVP R+ R AV L+T
Sbjct: 1517 LDLEIKSFNLSHNASRFAAMERPVYQAICRHAGKLEPKPALVFVPVRRQTRPVAVALLTM 1576
Query: 1598 SSMDGDQKSAFLLWPAEEV-EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFE 1656
+ DG K L ++ + + +I++E L+ ++ GVG+LHEG D +V LFE
Sbjct: 1577 ALADGAPKRFLRLAEHDDTFQALLADIEDESLRESVSCGVGFLHEGTAPKDVHIVQQLFE 1636
Query: 1657 AGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD 1716
+ I+VCV+ MC+ + ++A+LVVVM TQ+Y+G+ + + DYP+ D+L M+G A+RP+LD
Sbjct: 1637 SNAIQVCVVPRGMCYQIEMSAYLVVVMDTQFYNGKYHVYEDYPIADMLHMVGLANRPILD 1696
Query: 1717 NSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTW 1776
+ KCV++C ++ YYKKFL D PVESHL H LHD+FNAEIV IENKQDA+DYLTW
Sbjct: 1697 SDAKCVVMCQTSKRAYYKKFLCDPLPVESHLDHCLHDHFNAEIVTKTIENKQDAIDYLTW 1756
Query: 1777 TFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGM 1836
T +YRR+TQNPNYYNLQG +HRHLSD LSELVE T+ DLE SKCI ++++MD N GM
Sbjct: 1757 TLLYRRMTQNPNYYNLQGTTHRHLSDALSELVELTLKDLENSKCIAVKDEMDTVSLNLGM 1816
Query: 1837 IAXXXXXXXXXXERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRF 1896
IA E FS SL KT+ + L+E+++++SE+ +P+R E+ ++R+L
Sbjct: 1817 IASYYYISYQTIELFSMSLKEKTKTRALIEIISASSEFGNVPMRHKEDVILRQLAERLPG 1876
Query: 1897 SFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLS 1956
+N KFTDPHVK N L+ AH SR ++ L D E ++L A RL+QA VDV+SSNGWLS
Sbjct: 1877 QLKNQKFTDPHVKVNLLIHAHLSRVKLTAELNKDTELIVLRACRLVQACVDVLSSNGWLS 1936
Query: 1957 LALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERR 2016
A+ AME+SQM+TQ M+ + L QLPH L +R + K + +VF+L+E+E+D+R
Sbjct: 1937 PAIHAMELSQMLTQAMYSNEPYLKQLPHCSAALLERAK---AKEVTSVFELLELENDDRS 1993
Query: 2017 ELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPV 2076
++LQM +L D+ARFCN +P+I+++ E+++ + V + +++ L V LERD + PV
Sbjct: 1994 DILQMEGAELADVARFCNHYPSIEVATELEN-DVVTSNDNLMLAVSLERDNDIDGLAPPV 2052
Query: 2077 YSNRYP-KAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFM 2135
+ +P K KEEGWWLV+GD+++N LL IKR+ + KS V+LDFAAP G + L+F+
Sbjct: 2053 VAPLFPQKRKEEGWWLVIGDSESNALLTIKRLVINEKSSVQLDFAAP-RPGHHKFKLFFI 2111
Query: 2136 CDSYMGCDQEYAFTVDVKEAG 2156
DSY+G DQE+ V+E G
Sbjct: 2112 SDSYLGADQEFDVAFKVEEPG 2132
|
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| DICTYBASE|DDB_G0270042 ascc3l "U5 small nuclear ribonucleoprotein 200 kDa helicase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 4951 (1747.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 973/1921 (50%), Positives = 1350/1921 (70%)
Query: 260 LNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAEGDDREVENKLLYHLQFDKF 319
++ +ID++W+QRKIS+ F++ D ++LAE+ L IL + + R E +L+ DK
Sbjct: 330 ISPNEIDSFWIQRKISE-FER--DHDLSKQLAEKTLNILRQPNVRRCEQQLVDLFTIDKL 386
Query: 320 SLIKFLLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQ 379
+K ++ N+ +++CT LA+A++ +ERKKIE+EM P +IL++L TA +
Sbjct: 387 DFLKLIINNKQTILYCTLLAKAENDQERKKIEDEMSS-NPVTLSILNRLKGNEVTAATTE 445
Query: 380 KNLEKSIREEARRLKDESASXXXXXXXXXXXXXXXXXWLGQRQLLDLDTLAFQQGGLFMA 439
K +EK+ E+ + KD ++LL+L+ L+FQQG M
Sbjct: 446 KTIEKT---ESNK-KDVEMKQQQQQQQDEIKK--------PKKLLNLEELSFQQGSHLMT 493
Query: 440 NRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFK--GMTQLN 497
N++ P+GS+R KG+EEIHVPA + P +PNE+LI I E+PEW++ F+ G+ LN
Sbjct: 494 NKEFKFPKGSKREQYKGFEEIHVPARANPPFNPNERLISIEELPEWSRLPFEESGVKSLN 553
Query: 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRN-DDGSFNHSNYKIVYV 556
RVQS+++ A + +N+LL APT +GKTNVA+LTIL ++ NR+ D G +KIVY+
Sbjct: 554 RVQSKLFDCAFKTDNNLLLSAPTSSGKTNVAMLTILHEIGKNRDRDSGKIRLDAFKIVYI 613
Query: 557 APMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSG 616
APMK+LV E+VGN S RL+ Y + V EL+GDQ+LT +QI ETQIIVTTPEKWDIITRKSG
Sbjct: 614 APMKSLVQEMVGNFSKRLKSYGIVVNELTGDQSLTNKQISETQIIVTTPEKWDIITRKSG 673
Query: 617 DRTYTQLVKXXXXXXXXXXXXNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDV 676
DR YTQLVK RGPVLE IVART+R IE+T++ +RLVGLSATLPNYEDV
Sbjct: 674 DRAYTQLVKLIIIDEIHLLHDERGPVLECIVARTLRMIESTQQMVRLVGLSATLPNYEDV 733
Query: 677 ALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQV 736
A FLRV + G+FYFD+SYRP+PL QQYIGI + +++ Q ND+ + KV G HQ+
Sbjct: 734 ATFLRVEPD-GVFYFDSSYRPIPLEQQYIGIS-DRGIKQLQRCNDITFTKVSERVGDHQI 791
Query: 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD-MVKSNDLKDLLPY 795
LIFVHSR+ETAKT + +RD A+E+ ++ R+++ D SREIL++ +++ +LKDLLPY
Sbjct: 792 LIFVHSRRETAKTGKDLRDRAVEDQSIDRYIR-DPASREILRATASKQIQNAELKDLLPY 850
Query: 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGA 855
G IHHAG++R DR LVEDLFGD +QVL+STATLAWGVNLPAHTVIIKGTQIYNPEKG
Sbjct: 851 GIGIHHAGLSRSDRSLVEDLFGDNRIQVLISTATLAWGVNLPAHTVIIKGTQIYNPEKG- 909
Query: 856 WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQ 915
W ELSPLD+ QMLGRAGRP +D GEGIIIT EL++YLSL+N QL IESQF+S++AD
Sbjct: 910 WCELSPLDVTQMLGRAGRPPFDKEGEGIIITSQHELQFYLSLLNTQLSIESQFISRIADN 969
Query: 916 LNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTA 975
LNAEIVLG++Q ++A NW+GYTYLYI M+RNP LY ++ + ++D L +RR DLVH+A
Sbjct: 970 LNAEIVLGSIQTVRDAVNWLGYTYLYICMIRNPPLYEISYDDFEKDPLLEQRRLDLVHSA 1029
Query: 976 ATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSL 1035
ATIL++N+L+KYDRKSG Q T+LG++AS+YYI++ ++S Y EHLKP+M DIEL R+FSL
Sbjct: 1030 ATILEKNSLIKYDRKSGKLQSTELGKVASHYYITNSSMSIYQEHLKPSMSDIELLRVFSL 1089
Query: 1036 SEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSD 1095
S EFK V VR+ EK EL KLL+RVPIP+KE++EEPS+KINVLLQ YIS LKL+G +L D
Sbjct: 1090 SSEFKNVVVREGEKFELEKLLERVPIPIKENIEEPSSKINVLLQTYISNLKLDGFALVVD 1149
Query: 1096 MVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEIL 1155
M +I QSA R+ RALFEIVLK+GWAQLA+K LNL+KM+ +MWS Q+PLRQF+ I ++L
Sbjct: 1150 MFYIAQSASRITRALFEIVLKKGWAQLAKKILNLAKMIDSKMWSSQSPLRQFHKISPKVL 1209
Query: 1156 MKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKV 1215
+LE++ E Y+ + Q+LG I+ P G+ L +H FPKL L AHVQPI +L+V
Sbjct: 1210 NQLERRGIPIEDLYEYNSQQLGNAIQNPSEGKQLFDLIHNFPKLDLTAHVQPILHGLLRV 1269
Query: 1216 ELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIE-EDHSLNFTVPIY 1274
EL+ITPDF +D++ H +W+IVED DGE IL+ EYF LKK+ + ED ++FTVP+
Sbjct: 1270 ELSITPDFQYDERYHNNSIGWWIIVEDVDGERILYFEYFSLKKKMVNGEDQLVSFTVPLS 1329
Query: 1275 EPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEA 1334
+PLPPQY++RV+SD W+G++ LP+SF+HLILPEKYPP LLDLQPLP+ L++P E+
Sbjct: 1330 QPLPPQYYVRVISDHWIGAEYSLPISFQHLILPEKYPPCRPLLDLQPLPIQVLKDPKAES 1389
Query: 1335 LYQG-FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRA 1393
+++ F FN IQTQVF +Y ++DN ++APT SGKT+C+E A++R ++ + V
Sbjct: 1390 IFKPTFSIFNAIQTQVFNCMYQSNDNAFISAPTNSGKTVCAEIALIRCFKQNPKAKV--- 1446
Query: 1394 VYIAPLEALAKERYRDWEIKFG--QGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDA 1451
VY+AP++ LA R +DW KFG G+ V +LTG+ D K+L++ II++ EKWD
Sbjct: 1447 VYLAPMQDLASVRLKDWSNKFGVKSPFGLVVSDLTGDAVTDNKILDRSNIIVTNCEKWDI 1506
Query: 1452 LSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511
LSR+WKQRK +Q ++L I+DELHLIGG+ GP +E++VSRMRYI++Q N +R++ALS+S+
Sbjct: 1507 LSRKWKQRKALQSINLLIVDELHLIGGEYGPTMEIVVSRMRYISTQTGNALRVIALSSSI 1566
Query: 1512 ANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA 1571
ANA+DL WIGAT +NF P VRP+P+E IQG + +F ARM AMTKPT + ++
Sbjct: 1567 ANARDLVLWIGATPQTCYNFHPNVRPIPVEYQIQGFEFPHFNARMLAMTKPTVYEVAKN- 1625
Query: 1572 KNEKPALVFVPSRKYVRLTAVDLMT-YSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKA 1630
KN++ ++VFVP+RK R A D++ SS + +L+ + P+++++ LK
Sbjct: 1626 KNQQ-SIVFVPTRKLSRSLAADIIANVSSFEDTLTKPYLVCEEHVLTPYLEDVDSFALKQ 1684
Query: 1631 TLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVP-LTAHLVVVMGTQYYD 1689
+L+ GV + H+GL + ++ VV LF +G I+V + + S+ W + + A LVV+MGTQ Y
Sbjct: 1685 SLQMGVAFYHDGLTERERRVVEILFRSGSIRVLIATHSVAWLLDNVFAQLVVIMGTQLYQ 1744
Query: 1690 GQENAHTDYPVTDLLQMMGHASRP----LLDNS-GKCVILCHAPRKEYYKKFLYDAFPVE 1744
G++ + DYP+ D+LQM+G A + ++ N K ++LCHAP+KEYYK FL + PVE
Sbjct: 1745 GKDIRYIDYPINDILQMIGRAGKQEGGGVISNKVAKVLLLCHAPKKEYYKMFLNEPLPVE 1804
Query: 1745 SHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHL 1804
SHL H LHD FN+EIV I KQDA+DYLTWTF+YRRL QNPNYYNL GVSH HLS+HL
Sbjct: 1805 SHLDHCLHDQFNSEIVTKTITKKQDALDYLTWTFLYRRLNQNPNYYNLSGVSHLHLSEHL 1864
Query: 1805 SELVENTISDLEASKCIIIEEDMD-LSPSNHGMIAXXXXXXXXXXERFSSSLTPKTRMKG 1863
SELVENT+ +LE S CI I++D D +SP N G+IA E F SSL TR +G
Sbjct: 1865 SELVENTLVELEQSNCITIQDDQDKVSPLNLGIIASYYYLKYQTIELFGSSLKSTTRRRG 1924
Query: 1864 LLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQV 1923
+++++++A E+ LPIR E++++ +L H + P + + K N LLQ HFSR+ +
Sbjct: 1925 IMDIISNAPEFNSLPIRHREDQILMKLASHLPQKIDKPNYQEISTKVNVLLQCHFSRESI 1984
Query: 1924 GGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLP 1983
+L DQ+ +L +A+RLLQA+VDVISSN WL A+ AME+SQM+TQ MW+ DS+ QLP
Sbjct: 1985 SADLYQDQKFILENATRLLQAIVDVISSNSWLQPAIAAMELSQMITQAMWDSDSVFKQLP 2044
Query: 1984 HFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSF 2043
H K +R + IE+VFDL+ ++D+ R +LL +S + D+ + ++P+ID+S+
Sbjct: 2045 HMNK---RRIDAITSQGIESVFDLMSLDDNSRIQLLDLSQQESNDLVQSFMKYPDIDISY 2101
Query: 2044 EVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNR---------YPKAKEEGWWLVVG 2094
+VQD +++ A +T+++V+ERDL G E P+ N YPK K GWW ++G
Sbjct: 2102 QVQDEDDLHADSIMTVEMVIERDL-GDDEENPIEINDSINVVSAPYYPKEKICGWWALIG 2160
Query: 2095 DTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVDVKE 2154
D+K N LLAIKR++ +K++VK +F PA GK +LY DSY GCDQE+ +++
Sbjct: 2161 DSKNNHLLAIKRITFLKKTKVKFEFPTPA-VGKHQLSLYLFSDSYNGCDQEHELNINILP 2219
Query: 2155 A 2155
A
Sbjct: 2220 A 2220
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| F1NTD6 | ASCC3_CHICK | 3, ., 6, ., 4, ., 1, 2 | 0.4403 | 0.8544 | 0.8340 | yes | no |
| Q9U2G0 | U520_CAEEL | 3, ., 6, ., 4, ., 1, 3 | 0.5145 | 0.9777 | 0.9836 | yes | no |
| P32639 | BRR2_YEAST | 3, ., 6, ., 4, ., 1, 3 | 0.3899 | 0.9615 | 0.9593 | yes | no |
| O75643 | U520_HUMAN | 3, ., 6, ., 4, ., 1, 3 | 0.5823 | 0.9768 | 0.9868 | yes | no |
| Q9VUV9 | U520_DROME | 3, ., 6, ., 4, ., 1, 3 | 0.5730 | 0.9796 | 0.9869 | yes | no |
| Q9UT24 | BRR2_SCHPO | 3, ., 6, ., 4, ., 1, 3 | 0.4734 | 0.9703 | 0.9623 | yes | no |
| Q55CI8 | HELCL_DICDI | 3, ., 6, ., 4, ., - | 0.4835 | 0.9805 | 0.9459 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.13 | 0.946 |
| 3rd Layer | 3.6.4 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2158 | |||
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 0.0 | |
| pfam02889 | 309 | pfam02889, Sec63, Sec63 Brl domain | 1e-128 | |
| smart00611 | 312 | smart00611, SEC63, Domain of unknown function in S | 1e-120 | |
| smart00611 | 312 | smart00611, SEC63, Domain of unknown function in S | 1e-109 | |
| smart00973 | 314 | smart00973, Sec63, Sec63 Brl domain | 1e-108 | |
| pfam02889 | 309 | pfam02889, Sec63, Sec63 Brl domain | 1e-107 | |
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 8e-90 | |
| smart00973 | 314 | smart00973, Sec63, Sec63 Brl domain | 1e-88 | |
| PRK01172 | 674 | PRK01172, PRK01172, ski2-like helicase; Provisiona | 4e-45 | |
| PRK00254 | 720 | PRK00254, PRK00254, ski2-like helicase; Provisiona | 3e-44 | |
| PRK02362 | 737 | PRK02362, PRK02362, ski2-like helicase; Provisiona | 9e-44 | |
| PRK00254 | 720 | PRK00254, PRK00254, ski2-like helicase; Provisiona | 7e-43 | |
| PRK01172 | 674 | PRK01172, PRK01172, ski2-like helicase; Provisiona | 3e-40 | |
| PRK02362 | 737 | PRK02362, PRK02362, ski2-like helicase; Provisiona | 8e-38 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 2e-35 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 1e-34 | |
| COG1202 | 830 | COG1202, COG1202, Superfamily II helicase, archaea | 8e-32 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 2e-24 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 2e-23 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 1e-21 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 2e-21 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 1e-19 | |
| COG4581 | 1041 | COG4581, COG4581, Superfamily II RNA helicase [DNA | 4e-19 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 1e-17 | |
| COG1202 | 830 | COG1202, COG1202, Superfamily II helicase, archaea | 3e-17 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 2e-16 | |
| TIGR04121 | 803 | TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA | 2e-15 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 1e-14 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 3e-14 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 5e-12 | |
| COG4581 | 1041 | COG4581, COG4581, Superfamily II RNA helicase [DNA | 1e-11 | |
| PRK13767 | 876 | PRK13767, PRK13767, ATP-dependent helicase; Provis | 5e-11 | |
| COG4581 | 1041 | COG4581, COG4581, Superfamily II RNA helicase [DNA | 3e-10 | |
| PRK09751 | 1490 | PRK09751, PRK09751, putative ATP-dependent helicas | 3e-10 | |
| TIGR04121 | 803 | TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA | 4e-10 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 3e-09 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 2e-08 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 2e-08 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 9e-08 | |
| PRK13767 | 876 | PRK13767, PRK13767, ATP-dependent helicase; Provis | 1e-07 | |
| COG1203 | 733 | COG1203, COG1203, CRISPR-associated helicase Cas3 | 2e-07 | |
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 1e-06 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 1e-06 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 2e-06 | |
| PRK09751 | 1490 | PRK09751, PRK09751, putative ATP-dependent helicas | 8e-06 | |
| cd09639 | 353 | cd09639, Cas3_I, CRISPR/Cas system-associated prot | 8e-06 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 1e-05 | |
| TIGR01587 | 358 | TIGR01587, cas3_core, CRISPR-associated helicase C | 2e-05 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 4e-05 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 6e-05 | |
| pfam05285 | 317 | pfam05285, SDA1, SDA1 | 7e-04 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 7e-04 | |
| COG4547 | 620 | COG4547, CobT, Cobalamin biosynthesis protein CobT | 8e-04 | |
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 0.001 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 0.001 | |
| TIGR00643 | 630 | TIGR00643, recG, ATP-dependent DNA helicase RecG | 0.002 | |
| pfam03153 | 332 | pfam03153, TFIIA, Transcription factor IIA, alpha/ | 0.003 |
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Score = 620 bits (1602), Expect = 0.0
Identities = 259/808 (32%), Positives = 379/808 (46%), Gaps = 56/808 (6%)
Query: 459 EIHVPA--MKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILL 516
EI + + + ++++++I + + N Q V K LS N+L+
Sbjct: 1 EIFMKEEKLATSKVKLDDRVLEILKGDGIDE-------LFNPQQEAVEKGLLSDE-NVLI 52
Query: 517 CAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM 576
APTG+GKT +A+L IL + K+VY+ P+KAL E S RL+
Sbjct: 53 SAPTGSGKTLIALLAILS----------TLLEGGGKVVYIVPLKALAEEKYEEFS-RLEE 101
Query: 577 YDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636
++V +GD L +++ +IVTTPEK D +TRK + + V L++IDEIHLL
Sbjct: 102 LGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS--WIEEVDLVVIDEIHLLG 159
Query: 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSY 695
D RGPVLESIVAR R E IR+VGLSATLPN E+VA +L L + +
Sbjct: 160 DRTRGPVLESIVARMRRLNEL----IRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLR 215
Query: 696 RPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVV-AVAGKHQVLIFVHSRKETAKTARAIR 754
R VP ++G KK L+++L E V+ ++A QVL+FVHSRKE KTA+ +R
Sbjct: 216 RGVPYVGAFLGADGKKKTWP-LLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLR 274
Query: 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVED 814
+ + D + IL T + +L +L+ G A HHAG+ R DRQLVED
Sbjct: 275 IKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVED 334
Query: 815 LFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874
F G ++VLVST TLA GVNLPA TVIIK T+ Y+P+ G ++ LD++QM GRAGRP
Sbjct: 335 AFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGG-IVDIPVLDVLQMAGRAGRP 393
Query: 875 QYDSYGEGIII-TGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACN 933
YD YGE II+ T H EL Y L Q P SKL D+LN L V + +A +
Sbjct: 394 GYDDYGEAIILATSHDELEYLAELYIQSEPEP--IESKLGDELNLRTFLLGVISVGDAVS 451
Query: 934 WIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGY 993
W+ T Y R NP YG + +L N + D
Sbjct: 452 WLELTDFYERTFYNPQTYGEGMLREEILASLRYLEE-------------NGLILDADWEA 498
Query: 994 FQVTDLGRIASYYYISHGTISTYNE---HLKPTMGDIELCRLFSLSEEFKYVTVRQDEKM 1050
T+LG++ S YI + + + L +I L L SL+ + + +R+ E
Sbjct: 499 LHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDLMPIKLRERESS 558
Query: 1051 ELAK--LLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLR 1108
EL L ++ + E L+E + + N+LLQA + +L +D I + G
Sbjct: 559 ELVLDELEEQSDYLLGERLDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPG 618
Query: 1109 ALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERY 1168
L I W L+ L L K + + L + +++E E
Sbjct: 619 DLLRIAETAEW--LSADLLALGKAAERLAKILGLGLHVLR-KLEILSLRIEYG-VRSEEL 674
Query: 1169 YDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDK 1228
+L +R K+ +K + + A + P+T ++ I D
Sbjct: 675 LELVEIRGVGRVRARKLYNAGYKSLEDLRLIADPAELLPLTGIGERLVEAILESLGRDVL 734
Query: 1229 VHGYVEPFWVIVEDNDGEYILHHEYFML 1256
+ G F + V + D Y+LH E +L
Sbjct: 735 LSGRAYFFSIEVRELDLLYVLHEEALIL 762
|
Length = 766 |
| >gnl|CDD|217270 pfam02889, Sec63, Sec63 Brl domain | Back alignment and domain information |
|---|
Score = 406 bits (1045), Expect = e-128
Identities = 162/310 (52%), Positives = 214/310 (69%), Gaps = 7/310 (2%)
Query: 997 TDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL 1056
T+LGRIAS+YYI + T+ T+N LKP +L + S + EF+ + VR++EK EL KLL
Sbjct: 2 TELGRIASHYYILYETMETFNTSLKPNTTLKDLLEILSSASEFEEIPVREEEKKELKKLL 61
Query: 1057 DRVPIPVKES-LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVL 1115
+RVPIPVK +++P AK+N+LLQAY+S+LKL SL SD+ +I Q+AGRLLRALFEI L
Sbjct: 62 ERVPIPVKSPSIDDPHAKVNLLLQAYLSRLKLPDFSLVSDLNYILQNAGRLLRALFEIAL 121
Query: 1116 KRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFA-WERYYDLSPQ 1174
+GW A AL LSKM+ +R+W +PLRQ IP E+L KLEKK + E DL P+
Sbjct: 122 SKGWLSPALNALELSKMIEQRLWPSDSPLRQLPHIPPEVLKKLEKKGISSLEDLMDLDPE 181
Query: 1175 ELGELIRF-PKMGRTLHKFVHQFPKLILAAHVQPITRTV-LKVELTITPDFLWDDKVHGY 1232
ELGEL+ PK G+ + +FV++FP+L + A VQPITR V L+VE+T+T DF WD++ HG
Sbjct: 182 ELGELLGNNPKQGKDIAEFVNRFPRLEIEAEVQPITREVSLRVEVTLTRDFEWDERFHGK 241
Query: 1233 VEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPI-YEPLPPQYFIRVVSDKWL 1291
E FW++VED+D +L E F L K+ E H L FTVP+ PLPPQ IR+VSD WL
Sbjct: 242 SEGFWIVVEDSDNNELLAIERFTLNKKKDE--HELEFTVPLSGGPLPPQLTIRLVSDSWL 299
Query: 1292 GSQTVLPVSF 1301
G +PVS
Sbjct: 300 GCDQEVPVSL 309
|
This domain (also known as the Brl domain) is required for assembly of functional endoplasmic reticulum translocons. Length = 309 |
| >gnl|CDD|214744 smart00611, SEC63, Domain of unknown function in Sec63p, Brr2p and other proteins | Back alignment and domain information |
|---|
Score = 383 bits (986), Expect = e-120
Identities = 139/313 (44%), Positives = 203/313 (64%), Gaps = 4/313 (1%)
Query: 993 YFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMEL 1052
TDLGRIASYYYIS+ TI T+NE LKP M +L R+ S+S EF + VR +E + L
Sbjct: 1 GIWPTDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLL 60
Query: 1053 AKLLDRVPIPVK-ESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALF 1111
+L +++PI ++ SL++P K N+LLQA++S+LKL +L SD V++ Q+AGRLL+A+
Sbjct: 61 EELAEKLPIRLENPSLDDPHVKANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMV 120
Query: 1112 EIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD-FAWERYYD 1170
+I L+RGW A ALNLS+M+ + +W +PL Q +P EIL +LEKK + E +
Sbjct: 121 DIALERGWLSTALNALNLSQMIIQALWPTDSPLLQLPHLPEEILKRLEKKKVLSLEDLLE 180
Query: 1171 LSPQELGELIRFP-KMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKV 1229
L +E GEL+ G ++K + + PKL + ++PITRTVL VE+T+T D WDD++
Sbjct: 181 LEDEERGELLGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVLGVEVTLTVDLTWDDEI 240
Query: 1230 HGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDK 1289
HG E +W+++ D+DG +LH E F L K+ + E+ L+FT P E QY +R+VSD
Sbjct: 241 HGKQEGWWLVIGDSDGNELLHIERFSLNKKNVSEEVKLDFTAPATEGN-YQYTLRLVSDS 299
Query: 1290 WLGSQTVLPVSFR 1302
+LG P+SF
Sbjct: 300 YLGCDQEYPLSFD 312
|
Length = 312 |
| >gnl|CDD|214744 smart00611, SEC63, Domain of unknown function in Sec63p, Brr2p and other proteins | Back alignment and domain information |
|---|
Score = 351 bits (904), Expect = e-109
Identities = 141/328 (42%), Positives = 196/328 (59%), Gaps = 20/328 (6%)
Query: 1828 DLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVV 1887
+ P++ G IASYYYISYTTI F+ L PK K LL +L+ +SE+ Q+P+R E+ ++
Sbjct: 1 GIWPTDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLL 60
Query: 1888 RRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQV-GGNLKLDQEEVLLSASRLLQAMV 1946
L ENP DPHVKAN LLQAH SR ++ L+ D VL +A RLLQAMV
Sbjct: 61 EELAEKLPIRLENPSLDDPHVKANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMV 120
Query: 1947 DVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFD 2006
D+ GWLS AL A+ +SQM+ Q +W DS LLQLPH +++ KR ++ K + ++ D
Sbjct: 121 DIALERGWLSTALNALNLSQMIIQALWPTDSPLLQLPHLPEEILKRLEK---KKVLSLED 177
Query: 2007 LVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERD 2066
L+E+ED+ER ELL + D + + + +R P +++ ++ G ++TL V L D
Sbjct: 178 LLELEDEERGELLGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVLGVEVTLTVDLTWD 237
Query: 2067 LEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSR---VKLDFAAPA 2123
E K+EGWWLV+GD+ N+LL I+R SL +K+ VKLDF APA
Sbjct: 238 DE-------------IHGKQEGWWLVIGDSDGNELLHIERFSLNKKNVSEEVKLDFTAPA 284
Query: 2124 EAGKKTYTLYFMCDSYMGCDQEYAFTVD 2151
G YTL + DSY+GCDQEY + D
Sbjct: 285 TEGNYQYTLRLVSDSYLGCDQEYPLSFD 312
|
Length = 312 |
| >gnl|CDD|214946 smart00973, Sec63, Sec63 Brl domain | Back alignment and domain information |
|---|
Score = 348 bits (894), Expect = e-108
Identities = 134/313 (42%), Positives = 197/313 (62%), Gaps = 8/313 (2%)
Query: 997 TDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLL 1056
T+LGRIASYYYIS+ TI T+N+ LKPT ++ + S + EFK + VR +EK EL +L
Sbjct: 2 TELGRIASYYYISYETIETFNQSLKPTTTLKDILEILSRASEFKEIPVRHNEKKELNELN 61
Query: 1057 DRVPIPVKESLEE-PSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVL 1115
RVPIPVKE + + P AK+N+LLQA++S+L L L SD+ +I Q+A R+LRAL +I L
Sbjct: 62 KRVPIPVKEGIIDSPHAKVNLLLQAHLSRLPLPDFDLVSDLKYILQNAPRILRALVDIAL 121
Query: 1116 KRGWAQLAEKALNLSKMVTKRMWSV-QTPLRQFNGI-PNEILMKLEKKD--FAWERYYDL 1171
+GW + A AL+LS+MV +R+W +PL+Q ++ KLE KD ++E D+
Sbjct: 122 SKGWLRTALNALDLSQMVVQRLWEDSDSPLKQLPHFLIEDVYDKLELKDGSRSFELLLDM 181
Query: 1172 SPQELGELI-RFPKMGRTLHKFVHQFPKLILAAHVQPITRTV-LKVELTITPDFLWDDKV 1229
+ ELGE + R P GR +++ + +FPK+ + A V PITR + L+VEL ITP F WD
Sbjct: 182 NAAELGEFLNRLPPNGRLIYELLRRFPKIEVEAEVLPITRDLTLRVELEITPVFAWDLPR 241
Query: 1230 -HGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSD 1288
G E +W++V D+D +L + L+K+ + L+FTVP+ EP P Y + ++SD
Sbjct: 242 HKGKSESWWLVVGDSDTNELLAIKRVTLRKKKKSNEVKLDFTVPLSEPGPENYTVYLISD 301
Query: 1289 KWLGSQTVLPVSF 1301
+LG + S
Sbjct: 302 SYLGCDQEVSFSL 314
|
This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. Length = 314 |
| >gnl|CDD|217270 pfam02889, Sec63, Sec63 Brl domain | Back alignment and domain information |
|---|
Score = 345 bits (887), Expect = e-107
Identities = 123/321 (38%), Positives = 193/321 (60%), Gaps = 21/321 (6%)
Query: 1835 GMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQ 1894
G IAS+YYI Y T+E F++SL P T +K LLE+L+SASE+ ++P+R E++ +++L+
Sbjct: 5 GRIASHYYILYETMETFNTSLKPNTTLKDLLEILSSASEFEEIPVREEEKKELKKLLERV 64
Query: 1895 RFSFENPKFTDPHVKANALLQAHFSRQQV-GGNLKLDQEEVLLSASRLLQAMVDVISSNG 1953
++P DPH K N LLQA+ SR ++ +L D +L +A RLL+A+ ++ S G
Sbjct: 65 PIPVKSPSIDDPHAKVNLLLQAYLSRLKLPDFSLVSDLNYILQNAGRLLRALFEIALSKG 124
Query: 1954 WLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDD 2013
WLS AL A+E+S+M+ Q +W DS L QLPH ++ K+ ++ K I ++ DL++++ +
Sbjct: 125 WLSPALNALELSKMIEQRLWPSDSPLRQLPHIPPEVLKKLEK---KGISSLEDLMDLDPE 181
Query: 2014 ERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDS-ENVRAGEDITLQVVLERDLEGRTE 2072
E ELL + Q DIA F NRFP +++ EVQ V + ++V L RD E
Sbjct: 182 ELGELLGNNPKQGKDIAEFVNRFPRLEIEAEVQPITREV----SLRVEVTLTRDFE---- 233
Query: 2073 VGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRK-SRVKLDFAAPAEAGKKT-- 2129
+ R+ K EG+W+VV D+ N+LLAI+R +L +K +L+F P G
Sbjct: 234 ----WDERFHG-KSEGFWIVVEDSDNNELLAIERFTLNKKKDEHELEFTVPLSGGPLPPQ 288
Query: 2130 YTLYFMCDSYMGCDQEYAFTV 2150
T+ + DS++GCDQE ++
Sbjct: 289 LTIRLVSDSWLGCDQEVPVSL 309
|
This domain (also known as the Brl domain) is required for assembly of functional endoplasmic reticulum translocons. Length = 309 |
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Score = 310 bits (797), Expect = 8e-90
Identities = 191/650 (29%), Positives = 299/650 (46%), Gaps = 36/650 (5%)
Query: 1342 FNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEA 1401
FNP Q V L + D+NVL++APTGSGKT+ + AIL E G + VYI PL+A
Sbjct: 33 FNPQQEAVEKGLLS-DENVLISAPTGSGKTLIALLAILS---TLLEGG-GKVVYIVPLKA 87
Query: 1402 LAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKY 1461
LA+E+Y ++ + LG+RV TG+ +D + L + +I++TPEK D+L+R+ +
Sbjct: 88 LAEEKYEEFSRL--EELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS--W 143
Query: 1462 VQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEW 1520
+++V L +IDE+HL+G + GPVLE IV+RMR + IRIV LS +L NA+++ +W
Sbjct: 144 IEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNEL----IRIVGLSATLPNAEEVADW 199
Query: 1521 IGATS-HGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALV 1579
+ A + P R VP G D + +++ LV
Sbjct: 200 LNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKT-WPLLIDNLALELVLESLAEGGQVLV 258
Query: 1580 FVPSRKYVRLTAVDLMTYSSMDGDQKS-AFLLWPAEEVE-PFIDNIQEEMLKATLRHGVG 1637
FV SRK TA L S L A + P ++E L + GV
Sbjct: 259 FVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVA 318
Query: 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD 1697
+ H GL + D+++V F GKIKV V + ++ GV L A V++ T+ YD + D
Sbjct: 319 FHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYD-PKGGIVD 377
Query: 1698 YPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNA 1757
PV D+LQM G A RP D+ G+ +IL + + Y LY E L D N
Sbjct: 378 IPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESK-LGDELNL 436
Query: 1758 EIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEA 1817
+ + DAV +L T Y R NP Y L E + ++ LE
Sbjct: 437 RTFLLGVISVGDAVSWLELTDFYERTFYNPQTYG---------EGMLREEILASLRYLEE 487
Query: 1818 SKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFS---SSLTPKTRMKGLLEVLASASEY 1874
+ I+ + L + G + S YI + + F + L + GLL +++ +
Sbjct: 488 NGLILDADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDL 547
Query: 1875 AQLPIRPGE-EEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVGG-NLKLDQE 1932
+ +R E E+V + Q + + V+ N LLQA + ++ + D++
Sbjct: 548 MPIKLRERESSELVLDELEEQSDYLLGERLDELAVEYNLLLQALKTAARLLDWINEADED 607
Query: 1933 EVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQL 1982
E+L + ++ + + WLS LLA+ + + L L
Sbjct: 608 EILNAYGVAPGDLLRIAETAEWLSADLLAL--GKAAERLAKILGLGLHVL 655
|
Length = 766 |
| >gnl|CDD|214946 smart00973, Sec63, Sec63 Brl domain | Back alignment and domain information |
|---|
Score = 291 bits (747), Expect = 1e-88
Identities = 133/327 (40%), Positives = 192/327 (58%), Gaps = 28/327 (8%)
Query: 1835 GMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQ 1894
G IASYYYISY TIE F+ SL P T +K +LE+L+ ASE+ ++P+R E++ + L
Sbjct: 5 GRIASYYYISYETIETFNQSLKPTTTLKDILEILSRASEFKEIPVRHNEKKELNELNKRV 64
Query: 1895 RFSFENPKFTDPHVKANALLQAHFSRQQV-GGNLKLDQEEVLLSASRLLQAMVDVISSNG 1953
+ PH K N LLQAH SR + +L D + +L +A R+L+A+VD+ S G
Sbjct: 65 PIPVKEGIIDSPHAKVNLLLQAHLSRLPLPDFDLVSDLKYILQNAPRILRALVDIALSKG 124
Query: 1954 WLSLALLAMEVSQMVTQGMWE-RDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMED 2012
WL AL A+++SQMV Q +WE DS L QLPHF IE V+D +E++D
Sbjct: 125 WLRTALNALDLSQMVVQRLWEDSDSPLKQLPHF--------------LIEDVYDKLELKD 170
Query: 2013 DERRELLQMSDVQLLDIARFCNR-FPNIDMSFEV--QDSENVRAGEDITLQVVLERDLEG 2069
R + D+ ++ F NR PN + +E+ + + E + + L +E
Sbjct: 171 GS-RSFELLLDMNAAELGEFLNRLPPNGRLIYELLRRFPKIEVEAEVLPITRDLTLRVE- 228
Query: 2070 RTEVGPVYSNRYP--KAKEEGWWLVVGDTKTNQLLAIKRVSLQRK---SRVKLDFAAP-A 2123
E+ PV++ P K K E WWLVVGD+ TN+LLAIKRV+L++K + VKLDF P +
Sbjct: 229 -LEITPVFAWDLPRHKGKSESWWLVVGDSDTNELLAIKRVTLRKKKKSNEVKLDFTVPLS 287
Query: 2124 EAGKKTYTLYFMCDSYMGCDQEYAFTV 2150
E G + YT+Y + DSY+GCDQE +F++
Sbjct: 288 EPGPENYTVYLISDSYLGCDQEVSFSL 314
|
This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. Length = 314 |
| >gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 4e-45
Identities = 125/386 (32%), Positives = 195/386 (50%), Gaps = 55/386 (14%)
Query: 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567
L +N+++ PT AGKT +A I + + K +Y+ P+++L E
Sbjct: 34 LRKGENVIVSVPTAAGKTLIAYSAIYETF-----------LAGLKSIYIVPLRSLAMEKY 82
Query: 568 GNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLL 627
LS RL+ ++V+ GD I+ +++ T EK D + D V L+
Sbjct: 83 EELS-RLRSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHH--DPYIINDVGLI 139
Query: 628 IIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEK 686
+ DEIH++ D +RGP LE+ V + R + R++ LSAT+ N ++A +L +L K
Sbjct: 140 VADEIHIIGDEDRGPTLET-VLSSARYV---NPDARILALSATVSNANELAQWLNASLIK 195
Query: 687 GLFYFDNSYRPVPLSQQYIGIQVKKPL-----QRFQLMNDLCYEKVVAVAGKHQVLIFVH 741
+++RPVPL +GI +K L +R Q+ + ++ V G QVL+FV
Sbjct: 196 ------SNFRPVPLK---LGILYRKRLILDGYERSQVDINSLIKETVNDGG--QVLVFVS 244
Query: 742 SRKETAKTARAIRDTALENDTLGRFLKEDS---VSREILQSHTDMVKSNDLKDLLPYGFA 798
SRK A L + E + VS E + D L ++LP+G A
Sbjct: 245 SRKNAEDYAE----------MLIQHFPEFNDFKVSSENNNVYDDS-----LNEMLPHGVA 289
Query: 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTE 858
HHAG++ R+ +E++F + +++V+V+T TLA GVNLPA VI++ Y G
Sbjct: 290 FHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYG--NGGIRY 347
Query: 859 LSPLDIMQMLGRAGRPQYDSYGEGII 884
LS ++I QM+GRAGRP YD YG G I
Sbjct: 348 LSNMEIKQMIGRAGRPGYDQYGIGYI 373
|
Length = 674 |
| >gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 3e-44
Identities = 146/470 (31%), Positives = 229/470 (48%), Gaps = 63/470 (13%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
+G+ +L Q+ KS + N++L PT +GKT VA + ++ +L +G
Sbjct: 19 RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLL----REGG----- 69
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
K VY+ P+KAL E + + ++V +GD T + + + II+ T EK+D
Sbjct: 70 -KAVYLVPLKALAEEKYREFKD-WEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDS 127
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ R ++ + VKL++ DEIHL+ +RG LE I+ + + + ++GLSAT
Sbjct: 128 LLRHGS--SWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQ-------ILGLSAT 178
Query: 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ--YIG--IQVKKPLQRF-QLMNDLCY 724
+ N E++A +L L + +RPV L + Y G ++RF L Y
Sbjct: 179 VGNAEELAEWLNAELVV------SDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVY 232
Query: 725 EKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL--KEDSVSREILQSHTD 782
+ AV L+FV++R+ K A + + RFL E +E+ S +
Sbjct: 233 D---AVKKGKGALVFVNTRRSAEKEALEL------AKKIKRFLTKPELRALKELADSLEE 283
Query: 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI 842
+ LK L G A HHAG+ R +R L+ED F +G ++V+ +T TL+ G+NLPA VI
Sbjct: 284 NPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVI 343
Query: 843 IKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQ-- 900
I+ T+ Y+ W ++ L+I QM+GRAGRP+YD GE II+ E LM +
Sbjct: 344 IRDTKRYS--NFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPS---KLMERYI 398
Query: 901 ---------QLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941
L ES F S Q+ A I V N KE N++ T+
Sbjct: 399 FGKPEKLFSMLSNESAFRS----QVLALITNFGVSNFKELVNFLERTFYA 444
|
Length = 720 |
| >gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 9e-44
Identities = 134/438 (30%), Positives = 212/438 (48%), Gaps = 76/438 (17%)
Query: 478 KISEM--PEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
KI+E+ PE + +G+ +L Q+ ++ L N+L PT +GKT +A L +L
Sbjct: 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAML 61
Query: 534 QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593
+ +A K +Y+ P++AL +E R + V+V +GD +
Sbjct: 62 KAIA-----------RGGKALYIVPLRALASEKFEEFE-RFEELGVRVGISTGDYDSRDE 109
Query: 594 QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVR 652
+ + IIV T EK D + R + + +++DE+HL+ NRGP LE +A+ R
Sbjct: 110 WLGDNDIIVATSEKVDSLLRNGAP--WLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRR 167
Query: 653 QIETTKEHIRLVGLSATLPNYEDVALFLR----------VNLEKGLFY-----FDNSYRP 697
+++V LSAT+ N +++A +L ++L +G+FY FD+S R
Sbjct: 168 LNPD----LQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQRE 223
Query: 698 VPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETA----KTARAI 753
V V L+ D + Q L+FV SR+ + A A+
Sbjct: 224 VE---------VPSKDDTLNLVLD-------TLEEGGQCLVFVSSRRNAEGFAKRAASAL 267
Query: 754 RD--TALENDTLGRFLKEDSVSREILQ-SHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810
+ TA E L ++ EI + S T+ S DL D + G A HHAG++R R+
Sbjct: 268 KKTLTAAERAEL------AELAEEIREVSDTET--SKDLADCVAKGAAFHHAGLSREHRE 319
Query: 811 LVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIM---QM 867
LVED F D ++V+ ST TLA G+NLPA VII+ + Y+ G + P+ ++ QM
Sbjct: 320 LVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAG----MQPIPVLEYHQM 375
Query: 868 LGRAGRPQYDSYGEGIII 885
GRAGRP D YGE +++
Sbjct: 376 AGRAGRPGLDPYGEAVLL 393
|
Length = 737 |
| >gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 169 bits (429), Expect = 7e-43
Identities = 160/575 (27%), Positives = 263/575 (45%), Gaps = 82/575 (14%)
Query: 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396
+G + P Q + N+++A PT SGKT+ +E ++ ++ E G +AVY+
Sbjct: 19 RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMV--NKLLREGG--KAVYL 74
Query: 1397 APLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRW 1456
PL+ALA+E+YR E K + LG+RV TG+ + L K III+T EK+D+L R
Sbjct: 75 VPLKALAEEKYR--EFKDWEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRH- 131
Query: 1457 KQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK 1515
+++ V L + DE+HLIG G LE+I++ M + +I+ LS ++ NA+
Sbjct: 132 -GSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHM-------LGRAQILGLSATVGNAE 183
Query: 1516 DLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF----EARMQAMTKPTFTAIVQHA 1571
+L EW+ A RPV L +GV F + +++ + +
Sbjct: 184 ELAEWLNAEL-----VVSDWRPVKLR---KGVFYQGFLFWEDGKIERFPNSWESLVYDAV 235
Query: 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAE-EVEPFIDNIQE----E 1626
K K ALVFV +R+ A++L + FL P ++ D+++E E
Sbjct: 236 KKGKGALVFVNTRRSAEKEALEL-------AKKIKRFLTKPELRALKELADSLEENPTNE 288
Query: 1627 MLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQ 1686
LK LR GV + H GL +T++ ++ F G IKV + ++ G+ L A V++ T+
Sbjct: 289 KLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTK 348
Query: 1687 YYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHA--PRK--EYYKK----FLY 1738
Y D PV ++ QMMG A RP D G+ +I+ P K E Y L+
Sbjct: 349 RY--SNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLF 406
Query: 1739 DAFPVESHLHHFLHDNFNAEIVAGV----IENKQDAVDYLTWTFMYRRLTQNPNYYNLQG 1794
ES F ++++A + + N ++ V++L TF Q + Y+L+
Sbjct: 407 SMLSNES--------AFRSQVLALITNFGVSNFKELVNFLERTFYAH---QRKDLYSLEE 455
Query: 1795 VSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSS 1854
+ + L+EN D++ I P G+ S YI T ++F +
Sbjct: 456 ----KAKEIVYFLLENEFIDIDLEDRFI--------PLPLGIRTSQLYIDPLTAKKFKDA 503
Query: 1855 LTPKTRMK----GLLEVLASASEYAQLPIRPGEEE 1885
PK G+ +++AS + L E E
Sbjct: 504 F-PKIEKNPNPLGIFQLIASTPDMTPLNYSRKEME 537
|
Length = 720 |
| >gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (406), Expect = 3e-40
Identities = 140/493 (28%), Positives = 222/493 (45%), Gaps = 60/493 (12%)
Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418
NV+V+ PT +GKT+ + AI ++++YI PL +LA E+Y E+ + L
Sbjct: 39 NVIVSVPTAAGKTLIAYSAIYETFLAG-----LKSIYIVPLRSLAMEKYE--ELSRLRSL 91
Query: 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478
GMRV G+ +++ ++I T EK D+L + V L + DE+H+IG
Sbjct: 92 GMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHH--DPYIINDVGLIVADEIHIIGD 149
Query: 1479 QG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRP 1537
+ GP LE ++S RY+ RI+ALS +++NA +L +W+ A S NF RP
Sbjct: 150 EDRGPTLETVLSSARYVNPDA----RILALSATVSNANELAQWLNA-SLIKSNF----RP 200
Query: 1538 VPLEIHIQGVD--ITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLM 1595
VPL++ I I + R Q V + LVFV SRK A L+
Sbjct: 201 VPLKLGILYRKRLILDGYERSQVDINSLIKETVN---DGGQVLVFVSSRKNAEDYAEMLI 257
Query: 1596 TYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALF 1655
+ D K V +N+ ++ L L HGV + H GL+ + + +F
Sbjct: 258 QHFPEFNDFK----------VSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMF 307
Query: 1656 EAGKIKVCVMSSSMCWGVPLTAHLVVVMG-TQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714
IKV V + ++ GV L A LV+V T+Y +G ++ + QM+G A RP
Sbjct: 308 RNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEIK---QMIGRAGRPG 364
Query: 1715 LDNSGKCVILCHAPRK-EYYKKFLY-DAFPVESHLHHFLHDNFN--AEIVAGVIENKQDA 1770
D G I +P + KK+L + PV S++ FN A I G+ + +D
Sbjct: 365 YDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDL 424
Query: 1771 VDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLS 1830
+ + T M QN D + +E+++ L+ + I+ D+ L
Sbjct: 425 ILFYNETLMA---IQNG-------------VDEIDYYIESSLKFLKENG--FIKGDVTLR 466
Query: 1831 PSNHGMIASYYYI 1843
+ G + S YI
Sbjct: 467 ATRLGKLTSDLYI 479
|
Length = 674 |
| >gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 8e-38
Identities = 148/563 (26%), Positives = 251/563 (44%), Gaps = 82/563 (14%)
Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418
N+L A PT SGKT+ +E A+L+ + G +A+YI PL ALA E++ ++E +F + L
Sbjct: 41 NLLAAIPTASGKTLIAELAMLK---AIARGG--KALYIVPLRALASEKFEEFE-RFEE-L 93
Query: 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSR---RWKQRKYVQQVSLFIIDELHL 1475
G+RV TG+ + L II++T EK D+L R W + ++ ++DE+HL
Sbjct: 94 GVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPW-----LDDITCVVVDEVHL 148
Query: 1476 IGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGA---TSHGLFNF 1531
I GP LEV ++++R + ++ +VALS ++ NA +L +W+ A S
Sbjct: 149 IDSANRGPTLEVTLAKLRRLNPDLQ----VVALSATIGNADELADWLDAELVDSEW---- 200
Query: 1532 PPGVRPVPLEIHIQGV---DITNFEARMQAM---TKPTFTAIVQHAKNEK-PALVFVPSR 1584
RP+ L +GV +F+ + + +K +V E LVFV SR
Sbjct: 201 ----RPIDLR---EGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLEEGGQCLVFVSSR 253
Query: 1585 K----YVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640
+ + + A L + + A L AEE+ D + L + G + H
Sbjct: 254 RNAEGFAKRAASALKKTLTAAERAELAEL---AEEIREVSDTETSKDLADCVAKGAAFHH 310
Query: 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPV 1700
GL++ +E+V F IKV + ++ G+ L A V++ + YDG PV
Sbjct: 311 AGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQP-IPV 369
Query: 1701 TDLLQMMGHASRPLLDNSGKCVILC--HAPRKEYYKKFLY-DAFPVESHL-------HHF 1750
+ QM G A RP LD G+ V+L + E ++++++ D V S L H
Sbjct: 370 LEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHV 429
Query: 1751 LHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVEN 1810
L + I +G + +++L TF Y T + L +V++
Sbjct: 430 L-----STIASGFARTRDGLLEFLEATF-YATQTDDTGR--------------LERVVDD 469
Query: 1811 TISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMK--GLLEVL 1868
+ LE + I + + L + G + S YI + L + GLL ++
Sbjct: 470 VLDFLERNGMIEEDGE-TLEATELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLV 528
Query: 1869 ASASEYAQLPIRPGEEEVVRRLI 1891
S + +L +R G+ E + +
Sbjct: 529 CSTPDMYELYLRSGDYEWLNEYL 551
|
Length = 737 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 2e-35
Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 23/186 (12%)
Query: 497 NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV 556
+Q++ + LS D +L+ APTG+GKT +L ILQ L + + +
Sbjct: 1 TPIQAQAIPAILSGKD-VLVQAPTGSGKTLAFLLPILQALLP--------KKGGPQALVL 51
Query: 557 APMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIE----ETQIIVTTPEKWDIIT 612
AP + L ++ L ++ ++V L+G +L Q + + I+V TP + +
Sbjct: 52 APTRELAEQIYEELKKLFKILGLRVALLTGGTSLKEQARKLKKGKADILVGTPGRLLDLL 111
Query: 613 RKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
R+ G + +KLL++DE H L D G LE I++R +++ LSATLP
Sbjct: 112 RR-GKLKLLKNLKLLVLDEAHRLLDMGFGDDLEEILSR-------LPPDRQILLLSATLP 163
Query: 672 -NYEDV 676
N ED+
Sbjct: 164 RNLEDL 169
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 1e-34
Identities = 62/181 (34%), Positives = 96/181 (53%), Gaps = 18/181 (9%)
Query: 1343 NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEAL 1402
PIQ Q + + +VLV APTGSGKT+ IL+ + G +A+ +AP L
Sbjct: 1 TPIQAQAIPAILS-GKDVLVQAPTGSGKTLAFLLPILQAL--LPKKGGPQALVLAPTREL 57
Query: 1403 AKERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKG--QIIISTPEKWDALSRRWKQ 1458
A++ Y + + K + LG+RV LTG T++ + L+KG I++ TP + L RR K
Sbjct: 58 AEQIYEELK-KLFKILGLRVALLTGGTSLKEQARKLKKGKADILVGTPGRLLDLLRRGK- 115
Query: 1459 RKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLA-NAKD 1516
K ++ + L ++DE H + G G LE I+SR+ +I+ LS +L N +D
Sbjct: 116 LKLLKNLKLLVLDEAHRLLDMGFGDDLEEILSRLP-------PDRQILLLSATLPRNLED 168
Query: 1517 L 1517
L
Sbjct: 169 L 169
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 8e-32
Identities = 135/620 (21%), Positives = 232/620 (37%), Gaps = 147/620 (23%)
Query: 279 DQQIDPQQCQKLAEEVLKILAEGDDREVENKL-LYHLQFDKFSLIKF-LLRNRLKVVWCT 336
+Q P + KL IL ++ E+E L Y+L + L + LL R V+
Sbjct: 54 EQLRPPSEVLKLLRSARIILLPANEEEIEEMLKSYNLSAEVARLCRHCLLEGRYTVLTEG 113
Query: 337 RLARAQDQE-----ERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEAR 391
+ +E ++++ E+ G + + LE+ + +
Sbjct: 114 NRIKYGGEEICERCAEEELKRELRFRGNSIGM---------------LEQLERLLHKFR- 157
Query: 392 RLKDESASDGGRDRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQR 451
DLD + F +L R
Sbjct: 158 ---------------------------------DLDKVLEMLDPRFDPLEDPEL----TR 180
Query: 452 FTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSA 511
+ E V + LD EK ++ + +G+ +L VQ ++ L
Sbjct: 181 YDEVTAETDEVERVPVDELDIPEKFKRMLKR--------EGIEELLPVQVLAVEAGLLEG 232
Query: 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571
+N+L+ + T +GKT + L + +L L+ K++++ P+ AL + +
Sbjct: 233 ENLLVVSATASGKTLIGELAGIPRL-LSGGK---------KMLFLVPLVALANQKYEDFK 282
Query: 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDII--TRKSGD---RTYTQL--V 624
R +KV G ++R + E ++V T DII T + D RT L +
Sbjct: 283 ERYSKLGLKVAIRVG---MSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDI 339
Query: 625 KLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683
++IDEIH L D RGP L+ ++ R + + + LSAT+ N E++A L
Sbjct: 340 GTVVIDEIHTLEDEERGPRLDGLIGR----LRYLFPGAQFIYLSATVGNPEELAKKLGAK 395
Query: 684 LEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLC---YEKVVAVAGKHQVLIFV 740
L +D RPVPL + + + + +++ ++ L + + + Q ++F
Sbjct: 396 L----VLYDE--RPVPLERHLVFARNES--EKWDIIARLVKREFSTESSKGYRGQTIVFT 447
Query: 741 HSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIH 800
+SR+ + L L + PY
Sbjct: 448 YSRRRCHE--------------LADALTGKGLKAA------------------PY----- 470
Query: 801 HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELS 860
HAG+ +R+ VE F + +V+TA LA GV+ PA VI + + W LS
Sbjct: 471 HAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGI----EW--LS 524
Query: 861 PLDIMQMLGRAGRPQYDSYG 880
+ QMLGRAGRP Y G
Sbjct: 525 VREFQQMLGRAGRPDYHDRG 544
|
Length = 830 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-24
Identities = 55/219 (25%), Positives = 93/219 (42%), Gaps = 26/219 (11%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
G L Q ++ LS +++L APTG+GKT A+L L+ L
Sbjct: 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEAL---------KRGKG 54
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIE----ETQIIVTTPE 606
+++ + P + L + L +KV L G + Q + +T I+VTTP
Sbjct: 55 GRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPG 114
Query: 607 KWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVG 665
+ + D+ V L+I+DE H L D G LE ++ ++++L+
Sbjct: 115 RLLDLLEN--DKLSLSNVDLVILDEAHRLLDGGFGDQLEKLLKL-------LPKNVQLLL 165
Query: 666 LSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQY 704
LSAT P + L L +N + D + P+ +Q+
Sbjct: 166 LSATPPEEIENLLELFLN---DPVFIDVGFTPLEPIEQF 201
|
Length = 201 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 99.9 bits (249), Expect = 2e-23
Identities = 45/206 (21%), Positives = 82/206 (39%), Gaps = 18/206 (8%)
Query: 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397
GF+ P Q + L + +V++AAPTGSGKT+ + L + R + +
Sbjct: 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPAL---EALKRGKGGRVLVLV 61
Query: 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGET-AMDLKLLEKG--QIIISTPEKWDALSR 1454
P LA++ + + V G++ L+ LE G I+++TP + L
Sbjct: 62 PTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLE 121
Query: 1455 RWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513
K + V L I+DE H + G G LE ++ + ++++ LS +
Sbjct: 122 NDK--LSLSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP-------KNVQLLLLSATPPE 172
Query: 1514 AKDLGEWIGATSHGLFNFPPGVRPVP 1539
+ + + G P+
Sbjct: 173 EIENLLELFL--NDPVFIDVGFTPLE 196
|
Length = 201 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 1e-21
Identities = 104/430 (24%), Positives = 176/430 (40%), Gaps = 95/430 (22%)
Query: 480 SEMPEWAQPAFK-GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLAL 538
+ + + FK T L Q + S +N+L+ APTG+GKT A L ++ +L
Sbjct: 6 NILDPRVREWFKRKFTSLTPPQRYAIP-EIHSGENVLIIAPTGSGKTEAAFLPVINELL- 63
Query: 539 NRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN--RLQMYDVKVRELSGD--QTLTRQQ 594
+ +Y++P+KAL ++ L R +V VR GD Q+ ++
Sbjct: 64 --SLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVR--HGDTPQSEKQKM 119
Query: 595 IEETQ-IIVTTPEKWDII-TRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTV 651
++ I++TTPE I+ V+ +I+DEIH L ++ RG L + R +
Sbjct: 120 LKNPPHILITTPESLAILLNSPKFRELLRD-VRYVIVDEIHALAESKRGVQLALSLER-L 177
Query: 652 RQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR--PVPLSQQY-IGIQ 708
R++ + R +GLSAT+ E+VA FL F + V +++ I +
Sbjct: 178 REL--AGDFQR-IGLSATVGPPEEVAKFLVG--------FGDPCEIVDVSAAKKLEIKVI 226
Query: 709 VKKP-LQRFQLMNDLCYEKVVAVAGKHQ-VLIFVHSRKETAKTARAIRDTALENDTLGRF 766
L + + YE++ + KH+ LIF ++ R
Sbjct: 227 SPVEDLIYDEELWAALYERIAELVKKHRTTLIFTNT----------------------RS 264
Query: 767 LKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826
E R LK L P +HH ++R R VE+ +G ++ +V+
Sbjct: 265 GAERLAFR--------------LKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVA 310
Query: 827 TATLAWG-----VNLPAHTVIIKGTQIYNPEKGAWTELSPLDI---MQMLGRAGRPQYDS 878
T++L G ++L VI Q+ SP + +Q +GRAG +
Sbjct: 311 TSSLELGIDIGDIDL----VI----QL----------GSPKSVNRFLQRIGRAGH-RLGE 351
Query: 879 YGEGIIITGH 888
+GIII
Sbjct: 352 VSKGIIIAED 361
|
Length = 814 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 2e-21
Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 21/161 (13%)
Query: 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572
++LL APTG+GKT A+L IL+ L + +++ +AP + L +V L
Sbjct: 2 DVLLAAPTGSGKTLAALLPILELL---------DSLKGGQVLVLAPTRELANQVAERLKE 52
Query: 573 RLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLII 629
+KV L G ++ +Q +T I+V TP + + + + + LLI+
Sbjct: 53 LFG-EGIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELER--LKLSLKKLDLLIL 109
Query: 630 DEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670
DE H L + ++ + + +++ LSAT
Sbjct: 110 DEAHRLLNQ------GFGLLGLKILLKLPKDRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 1e-19
Identities = 81/365 (22%), Positives = 144/365 (39%), Gaps = 78/365 (21%)
Query: 1326 ALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKT------ICSEFAIL 1379
L + E + F P Q +++ +NVL+ APTGSGKT + +E +L
Sbjct: 7 ILDPRVREWFKRKFTSLTPPQRYAIPEIHS-GENVLIIAPTGSGKTEAAFLPVINE--LL 63
Query: 1380 RNHQKASETGVMRAVYIAPLEALAK---ERYRDWEIKFGQGLGMRVVELTGET--AMDLK 1434
+ E G+ A+YI+PL+AL R + + LG+ V G+T + K
Sbjct: 64 SLGKGKLEDGI-YALYISPLKALNNDIRRRLEEP----LRELGIEVAVRHGDTPQSEKQK 118
Query: 1435 LLEKGQ-IIISTPEK------WDALSRRWKQRKYVQQVSLFIIDELH-LIGGQGGPVLEV 1486
+L+ I+I+TPE + +YV I+DE+H L + G L +
Sbjct: 119 MLKNPPHILITTPESLAILLNSPKFRELLRDVRYV------IVDEIHALAESKRGVQLAL 172
Query: 1487 IVSRMRYIASQVENKIRIVALSTSLANAKDLGEWI-GATSHGLFNFPPGVRPVPLEIHIQ 1545
+ R+R +A RI LS ++ +++ +++ G + + +++
Sbjct: 173 SLERLRELAGDF---QRI-GLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISP 228
Query: 1546 GVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQK 1605
D+ E A+ + I + K + L+F +R A L
Sbjct: 229 VEDLIYDEELWAALYE----RIAELVKKHRTTLIFTNTRS----GAERL----------- 269
Query: 1606 SAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG-LNKTDQEVVSALFEAGKIKVCV 1664
AF L + D I +H G L++ + V + G++K V
Sbjct: 270 -AFRLK-----KLGPDII--------------EVHHGSLSRELRLEVEERLKEGELKAVV 309
Query: 1665 MSSSM 1669
+SS+
Sbjct: 310 ATSSL 314
|
Length = 814 |
| >gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 4e-19
Identities = 109/444 (24%), Positives = 176/444 (39%), Gaps = 104/444 (23%)
Query: 1357 DDNVLVAAPTGSGKTICSEFAI---LRNHQKASETGVMRAVYIAPLEALAKERYRDWEIK 1413
++VLV APT SGKT+ +E+AI LR+ Q R +Y +P++AL+ ++YRD K
Sbjct: 134 GESVLVCAPTSSGKTVVAEYAIALALRDGQ--------RVIYTSPIKALSNQKYRDLLAK 185
Query: 1414 FG---QGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRR---WKQRKYVQQVSL 1467
FG +G+ +TG+ +++ ++ T E + R ++ +
Sbjct: 186 FGDVADMVGL----MTGDVSIN----PDAPCLVMTTEILRNMLYRGSES-----LRDIEW 232
Query: 1468 FIIDELHLIG-GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSH 1526
+ DE+H IG + G V E ++ + + +R V LS ++ NA++ EWI
Sbjct: 233 VVFDEVHYIGDRERGVVWEEVI-------ILLPDHVRFVFLSATVPNAEEFAEWIQRVHS 285
Query: 1527 GLFNFPPGV----RPVPLEIHI-------QGVD------ITNFEA--------------- 1554
+ V RPVPLE + VD NF +
Sbjct: 286 QPIHV---VSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRET 342
Query: 1555 ---------------RMQAMTKPTFTAIVQHAKNEK--PALVFVPSRKYVRLTAVDLMTY 1597
R A IV + PA+VF SR+ A L T
Sbjct: 343 DDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTL 402
Query: 1598 SSMDGDQKSAFLLWPAEEVEPFIDNIQEE---------MLKATLRHGVGYLHEGLNKTDQ 1648
+ ++K + E ++ I ++ EE + A L G+ H GL +
Sbjct: 403 DLVLTEEKERAI---REIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIK 459
Query: 1649 EVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMG 1708
E+V LF+ G +KV + + G+ + A VV +DG N H + QM G
Sbjct: 460 ELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDG--NGHRWLSPGEYTQMSG 517
Query: 1709 HASRPLLDNSGKCVILCHAPRKEY 1732
A R LD G +++ E
Sbjct: 518 RAGRRGLDVLGTVIVIEPPFESEP 541
|
Length = 1041 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 1e-17
Identities = 71/353 (20%), Positives = 107/353 (30%), Gaps = 44/353 (12%)
Query: 1280 QYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGF 1339
+Y D ++L I +AL E LY
Sbjct: 19 EYLEDEFKDAEGQEGSILRD---PEIEARPGKTSEFPELRDESLKSALVKAGIERLY--- 72
Query: 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399
H Q ++ NV+V TGSGKT IL RA+ + P
Sbjct: 73 SH----QVDALRLIRE-GRNVVVTTGTGSGKTESFLLPIL---DHLLRDPSARALLLYPT 124
Query: 1400 EALA---KERYRDWEIKFGQGLGMRVVELTGET---AMDLKLLEKGQIIISTPEKWDALS 1453
ALA ER R+ + TG+T + I+++ P+ L
Sbjct: 125 NALANDQAERLRELISDLPGKVTFGR--YTGDTPPEERRAIIRNPPDILLTNPDMLHYLL 182
Query: 1454 RRWKQRKYVQ--QVSLFIIDELHL-IGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTS 1510
R + ++DELH G QG V + + R+ + + ++I+ S +
Sbjct: 183 LRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALL-LRRLLRRLRRYGSPLQIICTSAT 241
Query: 1511 LANAKDLGEWIGATSHGLFNFPPGV------RPVPLEIHIQGVDITNFEARMQAMTKPTF 1564
LAN + E LF V P L ++ A +
Sbjct: 242 LANPGEFAE-------ELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALAE 294
Query: 1565 TAIV---QHAKNEKPALVFVPSRKYV-RLTAVDLMTYSSMDGDQKSAFLLWPA 1613
A + + LVF SRK V L G A + A
Sbjct: 295 LATLAALLVRNGIQT-LVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRA 346
|
Length = 851 |
| >gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.3 bits (219), Expect = 3e-17
Identities = 105/458 (22%), Positives = 182/458 (39%), Gaps = 118/458 (25%)
Query: 1297 LPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNT 1356
+P F+ ++ E ELL +Q L V A L +G
Sbjct: 201 IPEKFKRMLKREGI---EELLPVQVLAVEA-------GLLEG------------------ 232
Query: 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416
+N+LV + T SGKT+ E A + + + +++ PL ALA ++Y D++ ++ +
Sbjct: 233 -ENLLVVSATASGKTLIGELAGIPRLLSGGK----KMLFLVPLVALANQKYEDFKERYSK 287
Query: 1417 GLGMRVVELTG-------ETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFI 1469
LG++V G E + + II+ T E D L R K + V +
Sbjct: 288 -LGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTV---V 343
Query: 1470 IDELHLIG-GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGL 1528
IDE+H + + GP L+ ++ R+RY+ + + LS ++ N ++L + +GA L
Sbjct: 344 IDEIHTLEDEERGPRLDGLIGRLRYLFPGAQ----FIYLSATVGNPEELAKKLGAKLV-L 398
Query: 1529 FNFPPGVRPVPLEIHI-------QGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFV 1581
++ RPVPLE H+ + DI + + T+ + Q +VF
Sbjct: 399 YD----ERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQ-------TIVFT 447
Query: 1582 PSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641
SR+ A D +T + P+ H
Sbjct: 448 YSRRRCHELA-DALTGKGLK--------------AAPY--------------------HA 472
Query: 1642 GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVV----VMGTQYYDGQENAHTD 1697
GL +++ V F A ++ V ++++ GV A V+ MG ++ +E
Sbjct: 473 GLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVRE----- 527
Query: 1698 YPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKK 1735
QM+G A RP + GK +L P K+Y+
Sbjct: 528 -----FQQMLGRAGRPDYHDRGKVYLLVE-PGKKYHAS 559
|
Length = 830 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 2e-16
Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 16/153 (10%)
Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418
+VL+AAPTGSGKT+ + IL + + + +AP LA + +K G
Sbjct: 2 DVLLAAPTGSGKTLAALLPIL---ELLDSLKGGQVLVLAPTRELANQVAE--RLKELFGE 56
Query: 1419 GMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL 1475
G++V L G T++ L K I++ TP + R K ++++ L I+DE H
Sbjct: 57 GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLK--LSLKKLDLLILDEAHR 114
Query: 1476 IGGQGGPVLEVIVSRMRYIASQVENKIRIVALS 1508
+ QG + I ++ +++ LS
Sbjct: 115 LLNQGFGL------LGLKILLKLPKDRQVLLLS 141
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 2e-15
Identities = 95/390 (24%), Positives = 150/390 (38%), Gaps = 105/390 (26%)
Query: 515 LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574
LL APTG+GKT L L LA +Y+ P++AL ++ NL +
Sbjct: 32 LLIAPTGSGKTLAGFLPSLIDLAGPEK-----PKKGLHTLYITPLRALAVDIARNLQAPI 86
Query: 575 Q--MYDVKVRELSGDQTLTRQQIEET---QIIVTTPEKWDI-ITRKSGDRTYTQLVKLLI 628
+ ++V +GD + + + + I++TTPE + ++ R + L + ++
Sbjct: 87 EELGLPIRVETRTGDTSSSERARQRKKPPDILLTTPESLALLLSYPDAARLFKDL-RCVV 145
Query: 629 IDEIH-LLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG 687
+DE H L RG LE +AR + +R GLSAT+ N E+ L
Sbjct: 146 VDEWHELAGSKRGDQLELALAR----LRRLAPGLRRWGLSATIGNLEEARRVL------- 194
Query: 688 LFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETA 747
+ V G VL+
Sbjct: 195 ----------------------------------------LGVGGAPAVLV-------RG 207
Query: 748 KTARAIRDTALENDTLGRF-------LKE-DSVSREILQSHTDMVKSN----------DL 789
K +AI +L ++ RF L+ V EI Q+ T +V +N L
Sbjct: 208 KLPKAIPVISLLPESEERFPWAGHLGLRALPEVYAEIDQARTTLVFTNTRSQAELWFQAL 267
Query: 790 KDLLPYGF---AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVN-LPAHTVIIKG 845
+ P A+HH + R R+ VE G ++ +V T++L GV+ P VI
Sbjct: 268 WEANPEFALPIALHHGSLDREQRRWVEAAMAAGRLRAVVCTSSLDLGVDFGPVDLVI--- 324
Query: 846 TQIYNPEKGAWTELSPLDIMQMLGRAG-RP 874
QI +P KG + L +Q GR+ RP
Sbjct: 325 -QIGSP-KGV----ARL--LQRAGRSNHRP 346
|
Members of this protein family are DEAD/DEAH box helicases found associated with a bacterial ATP-dependent DNA ligase, part of a four-gene system that occurs in about 12 % of prokaryotic reference genomes. The actual motif in this family is DE[VILW]H. Length = 803 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 1e-14
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP-AHTVIIKGTQIYNP 851
L A H G+++ +R+ + D F +G ++VLV+T G++LP VII
Sbjct: 10 LGIKVARLHGGLSQEEREEILDKFNNGKIKVLVATDVAERGLDLPGVDLVIIYD------ 63
Query: 852 EKGAWTELSPLDIMQMLGRAGRP 874
SP +Q +GRAGR
Sbjct: 64 -----LPWSPASYIQRIGRAGRA 81
|
Length = 82 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 3e-14
Identities = 101/468 (21%), Positives = 169/468 (36%), Gaps = 85/468 (18%)
Query: 480 SEMPEWAQPAFK------GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL 533
SE PE + K G+ +L Q + + N+++ TG+GKT +L IL
Sbjct: 49 SEFPELRDESLKSALVKAGIERLYSHQVDALR-LIREGRNVVVTTGTGSGKTESFLLPIL 107
Query: 534 QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS--NRLQMYDVKVRELSGD--QT 589
L + + + + + P AL + L V +GD
Sbjct: 108 DHLLRDPSA---------RALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPE 158
Query: 590 LTRQQIEE-TQIIVTTPEKWDIITRKSGDRT---YTQLVKLLIIDEIHLLHDNRGPVLES 645
R I I++T P+ + ++ D L K L++DE LH RG V S
Sbjct: 159 ERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNL-KYLVVDE---LHTYRG-VQGS 213
Query: 646 IVA----RTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPVPL 700
VA R +R++ ++++ SATL N E + E D P L
Sbjct: 214 EVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFE---VPVDEDGSPRGL 270
Query: 701 SQQYI---GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTA 757
I+ R + +L + V Q L+F SRK+ + R
Sbjct: 271 RYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPR--- 327
Query: 758 LENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG 817
R ++E ++L + + + AG+ R +R+ +E F
Sbjct: 328 ------RRLVRE---GGKLLDAVS-----------------TYRAGLHREERRRIEAEFK 361
Query: 818 DGHVQVLVSTATLAWGVNLPA-HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876
+G + +++T L G+++ + VI G P L Q GRAGR
Sbjct: 362 EGELLGVIATNALELGIDIGSLDAVIAYG----YPGVSV------LSFRQRAGRAGRRGQ 411
Query: 877 DSYGEGIIITGHSE--LRYYLSLMNQQLPIESQFVSKLADQLNAEIVL 922
+S +++ S+ YYL + L V + N E +L
Sbjct: 412 ESL---VLVVLRSDPLDSYYLRHPEELLETGFGPVESVRVDDNNEYLL 456
|
Length = 851 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 5e-12
Identities = 38/175 (21%), Positives = 67/175 (38%), Gaps = 54/175 (30%)
Query: 699 PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTAL 758
P+ Q + ++ +K +L+ + + +VLIF S+K
Sbjct: 1 PIKQYVLPVEDEKLEALLELLKEH-------LKKGGKVLIFCPSKKML------------ 41
Query: 759 ENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD 818
D L L++ + A H ++ +R+ V F +
Sbjct: 42 --DELAELLRKPGIK-----------------------VAALHGDGSQEEREEVLKDFRE 76
Query: 819 GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873
G + VLV+T +A G++LP +V+I Y+ SP +Q +GRAGR
Sbjct: 77 GEIVVLVATDVIARGIDLPNVSVVI----NYDLPW------SPSSYLQRIGRAGR 121
|
Length = 131 |
| >gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 1e-11
Identities = 40/94 (42%), Positives = 56/94 (59%), Gaps = 2/94 (2%)
Query: 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNP 851
LL G A+HHAG+ ++LVE+LF +G V+V+ +T T A G+N+PA TV+ ++
Sbjct: 442 LLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDG 501
Query: 852 EKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
W LSP + QM GRAGR D G I+I
Sbjct: 502 NGHRW--LSPGEYTQMSGRAGRRGLDVLGTVIVI 533
|
Length = 1041 |
| >gnl|CDD|237497 PRK13767, PRK13767, ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 5e-11
Identities = 58/184 (31%), Positives = 96/184 (52%), Gaps = 21/184 (11%)
Query: 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572
N+L+ +PTG+GKT A L I+ +L +G Y +YV+P++AL ++ NL
Sbjct: 49 NVLISSPTGSGKTLAAFLAIIDEL-FRLGREGELEDKVY-CLYVSPLRALNNDIHRNLEE 106
Query: 573 RLQ------------MYDVKVRELSGDQTLTRQQ--IEET-QIIVTTPEKWDIITRKSGD 617
L + +++V +GD + +Q +++ I++TTPE I+
Sbjct: 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKF 166
Query: 618 RTYTQLVKLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDV 676
R + VK +I+DEIH L +N RG L + R + ++ E +R +GLSAT+ E+V
Sbjct: 167 REKLRTVKWVIVDEIHSLAENKRGVHLSLSLER-LEEL-AGGEFVR-IGLSATIEPLEEV 223
Query: 677 ALFL 680
A FL
Sbjct: 224 AKFL 227
|
Length = 876 |
| >gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 3e-10
Identities = 61/252 (24%), Positives = 106/252 (42%), Gaps = 47/252 (18%)
Query: 458 EEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLC 517
+ VP + E+ + Q A + L +++L+C
Sbjct: 96 DYDMVPDAESPFDLAPPAREYPFELDPFQQEAI---------------AILERGESVLVC 140
Query: 518 APTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY 577
APT +GKT VA I LAL +++Y +P+KAL + +L +
Sbjct: 141 APTSSGKTVVAEYAI--ALALRDGQ---------RVIYTSPIKALSNQKYRDLLAKFGDV 189
Query: 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKL--LIIDEIHLL 635
V ++GD ++ + +V T E I R R L + ++ DE+H +
Sbjct: 190 ADMVGLMTGDVSIN----PDAPCLVMTTE----ILRNMLYRGSESLRDIEWVVFDEVHYI 241
Query: 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNS 694
D RG V E ++ I H+R V LSAT+PN E+ A +++ + + ++
Sbjct: 242 GDRERGVVWEEVI------ILLPD-HVRFVFLSATVPNAEEFAEWIQ-RVHSQPIHVVST 293
Query: 695 -YRPVPLSQQYI 705
+RPVPL + ++
Sbjct: 294 EHRPVPL-EHFV 304
|
Length = 1041 |
| >gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 3e-10
Identities = 105/418 (25%), Positives = 172/418 (41%), Gaps = 114/418 (27%)
Query: 518 APTGAGKTNVAVLTILQQLALNRNDDGSFNH--SNYKIVYVAPMKALVAEVVGNLSNRLQ 575
APTG+GKT A L L +L +D H +I+Y++P+KAL +V NL L+
Sbjct: 3 APTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLK 62
Query: 576 -MYDVKVRE-----------LSGDQT------LTRQQIEETQIIVTTPEK-WDIITRKSG 616
+ D + R +GD LTR I++TTPE + ++T ++
Sbjct: 63 GIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRN---PPDILITTPESLYLMLTSRA- 118
Query: 617 DRTYTQLVKLLIIDEIHLLH-DNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYED 675
R + V+ +IIDE+H + RG L + R + T+ + I GLSAT+ + D
Sbjct: 119 -RETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRI---GLSATVRSASD 174
Query: 676 VALFLRVNLEKGLFYFDNSYRPV----PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVA 731
VA FL RPV P + ++ I++ P+ M+D V +VA
Sbjct: 175 VAAFL------------GGDRPVTVVNPPAMRHPQIRIVVPVAN---MDD-----VSSVA 214
Query: 732 GKH----------------------QVL------IFVHSR----KETAK-----TARAIR 754
+VL +F +SR K TA+ AR R
Sbjct: 215 SGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQR 274
Query: 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVED 814
++ D + S + S + +S HH +++ R + E
Sbjct: 275 SPSIAVDAAHFESTSGATSNRVQSSDVFIARS-------------HHGSVSKEQRAITEQ 321
Query: 815 LFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872
G ++ +V+T++L G+++ A ++I Q+ P LS +Q +GRAG
Sbjct: 322 ALKSGELRCVVATSSLELGIDMGAVDLVI---QVATP-------LSVASGLQRIGRAG 369
|
Length = 1490 |
| >gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 4e-10
Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 10/168 (5%)
Query: 1361 LVAAPTGSGKTICSEFAIL-RNHQKASETGVMRAVYIAPLEALAKERYRDWE-IKFGQGL 1418
L+ APTGSGKT+ L + +YI PL ALA + R+ + GL
Sbjct: 32 LLIAPTGSGKTLAGFLPSLIDLAGPEKPKKGLHTLYITPLRALAVDIARNLQAPIEELGL 91
Query: 1419 GMRVVELTGETAMDLKLLEKG---QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH- 1474
+RV TG+T+ + ++ I+++TPE L + + + ++DE H
Sbjct: 92 PIRVETRTGDTSSSERARQRKKPPDILLTTPESLALLLSYPDAARLFKDLRCVVVDEWHE 151
Query: 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIG 1522
L G + G LE+ ++R+R +A + R LS ++ N ++ +
Sbjct: 152 LAGSKRGDQLELALARLRRLAPGL----RRWGLSATIGNLEEARRVLL 195
|
Members of this protein family are DEAD/DEAH box helicases found associated with a bacterial ATP-dependent DNA ligase, part of a four-gene system that occurs in about 12 % of prokaryotic reference genomes. The actual motif in this family is DE[VILW]H. Length = 803 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 3e-09
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 12/80 (15%)
Query: 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP-AHTVIIKGTQIYNPEK 853
A H G+++ +R+ + + F +G +VLV+T G++LP + VI Y+
Sbjct: 8 IKVARLHGGLSQEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNLVI-----NYDLPW 62
Query: 854 GAWTELSPLDIMQMLGRAGR 873
+P +Q +GRAGR
Sbjct: 63 ------NPASYIQRIGRAGR 76
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 2e-08
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASET 1388
L +Y GF+ PIQ + L + D V+ A TGSGKT IL + +
Sbjct: 9 ELLRGIYALGFEKPTPIQARAIPPLLSGRD-VIGQAQTGSGKTAAFLIPILEKLDPSPKK 67
Query: 1389 GVMRAVYIAPLEALA---KERYRDWEIKFGQGLGMRVVELTGETAM--DLKLLEKG-QII 1442
+A+ +AP LA E R K G+ ++VV + G T++ ++ L++G I+
Sbjct: 68 DGPQALILAPTRELALQIAEVAR----KLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIV 123
Query: 1443 ISTPEKWDALSRRWKQRKYVQQVSLFIIDE 1472
++TP + L R K + +V ++DE
Sbjct: 124 VATPGRLLDLLERGKLD--LSKVKYLVLDE 151
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-08
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 7/125 (5%)
Query: 1327 LRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA 1385
L L +AL GF+ PIQ ++ D VL A TG+GKT +L+ K+
Sbjct: 36 LSPELLQALKDLGFEEPTPIQLAAIPLILAGRD-VLGQAQTGTGKTAAFLLPLLQKILKS 94
Query: 1386 SETGVMRAVYIAPLEALAKERYRDWEIKFGQGL-GMRVVELTGETAMD--LKLLEKG-QI 1441
E + A+ +AP LA + + K G+ L G+RV + G ++ ++ L++G I
Sbjct: 95 VERKYVSALILAPTRELAVQIAEE-LRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDI 153
Query: 1442 IISTP 1446
+++TP
Sbjct: 154 VVATP 158
|
Length = 513 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 9e-08
Identities = 89/490 (18%), Positives = 171/490 (34%), Gaps = 101/490 (20%)
Query: 453 TNKGYEEIHVPAMKHKPLDPNEKLIKISE-MPEWAQPAFKGMTQLNRVQSRVYKSALSSA 511
K + + + K L E + F+ T +Q L+
Sbjct: 11 KLKSAHNVALSRGEEKTPPEFASLGLSPELLQALKDLGFEEPTP---IQLAAIPLILAGR 67
Query: 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571
D +L A TG GKT +L +LQ++ ++ +AP + L ++ L
Sbjct: 68 D-VLGQAQTGTGKTAAFLLPLLQKI-----LKSVERKYVSALI-LAPTRELAVQIAEELR 120
Query: 572 NRLQ-MYDVKVRELSGDQTLTRQ--QIEET-QIIVTTPEK-WDIITRKSGDRTYTQLVKL 626
+ + ++V + G ++ +Q ++ I+V TP + D+I R D V+
Sbjct: 121 KLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLD---LSGVET 177
Query: 627 LIIDEIHLLHD---NRG--PVLESIVARTVRQIETTKEHIRLVGL-SATLPNYEDVALFL 680
L++DE D + G +E I+ R L SAT+P +D+
Sbjct: 178 LVLDEA----DRMLDMGFIDDIEKILKAL--------PPDRQTLLFSATMP--DDIRELA 223
Query: 681 RVNLEKGLFY---FDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVL 737
R L + + R + +Q+ ++V+ ++ +L+ L + +V+
Sbjct: 224 RRYLNDPVEIEVSVEKLERTLKKIKQFY-LEVESEEEKLELLLKLL-----KDEDEGRVI 277
Query: 738 IFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797
+FV +++ + A L++ L
Sbjct: 278 VFVRTKRLVEELA--------------ESLRKRGFKVAAL-------------------- 303
Query: 798 AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWT 857
H + + +R + F DG ++VLV+T A G+++P + +I Y+
Sbjct: 304 ---HGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVIN----YDL------ 350
Query: 858 ELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE----LRYYLSLMNQQLPIESQFVSKLA 913
L P D + +GR GR G I E L+ + ++LP
Sbjct: 351 PLDPEDYVHRIGRTGR--AGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEP 408
Query: 914 DQLNAEIVLG 923
+
Sbjct: 409 EDAKLLKTTR 418
|
Length = 513 |
| >gnl|CDD|237497 PRK13767, PRK13767, ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-07
Identities = 55/185 (29%), Positives = 90/185 (48%), Gaps = 22/185 (11%)
Query: 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMR----AV 1394
F F P Q L + NVL+++PTGSGKT+ + AI+ + G + +
Sbjct: 30 FGTFTPPQRYAI-PLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCL 88
Query: 1395 YIAPLEALAKERYRDWEI----------KFGQGL-GMRVVELTGETAMD--LKLLEKG-Q 1440
Y++PL AL + +R+ E + G+ L +RV TG+T+ K+L+K
Sbjct: 89 YVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPH 148
Query: 1441 IIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH-LIGGQGGPVLEVIVSRMRYIASQVE 1499
I+I+TPE L K R+ ++ V I+DE+H L + G L + + R+ +A
Sbjct: 149 ILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAG--G 206
Query: 1500 NKIRI 1504
+RI
Sbjct: 207 EFVRI 211
|
Length = 876 |
| >gnl|CDD|224124 COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 2e-07
Identities = 77/461 (16%), Positives = 154/461 (33%), Gaps = 105/461 (22%)
Query: 441 RKCDLPEGSQRFTNKGYEEIHVPAM--KHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNR 498
K D+ + E + + + K E +L
Sbjct: 151 EKMDIKDTRNFTELAKQEARLLKPLLLLLSAIARINKFKSFIE---------HEGYELQE 201
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+ + ++L APTG GKT +++ L L +++YV P
Sbjct: 202 KALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKS-------RVIYVLP 254
Query: 559 MKALVAEVVGNLSNRLQMYDVKVRELSG--DQTLTRQQIEETQIIVTTPEKWDIITRK-S 615
+ ++ ++ ++ V + L + L + ++ + +TT + + +
Sbjct: 255 FRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALI 314
Query: 616 GDRTYTQLVK----------------LLIIDEIHLLHDNRGPVLESIVARTVRQIETTKE 659
L+ L+I+DE+HL D + + + + +
Sbjct: 315 VVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETML---AALLALLEALA--EA 369
Query: 660 HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPV--PLSQQYIGIQVKKPLQRFQ 717
+ ++ +SATLP + L + + + P ++ + V+ +
Sbjct: 370 GVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVED--GPQE 427
Query: 718 LMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREIL 777
+ +L E+V GK +VL+ V++ RAI L LKE
Sbjct: 428 ELIELISEEV--KEGK-KVLVIVNTVD------RAIE--------LYEKLKEK------- 463
Query: 778 QSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ----LVEDLFGDGHVQVLVSTATLAWG 833
LL H+ T DR+ ++ LF ++V+T + G
Sbjct: 464 ---------GPKVLLL-------HSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAG 507
Query: 834 VNLPAHTVIIKGTQIYNPEKGAWTELSPLD-IMQMLGRAGR 873
V++ +I TEL+P+D ++Q GR R
Sbjct: 508 VDIDFDVLI--------------TELAPIDSLIQRAGRVNR 534
|
Length = 733 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-06
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559
Q + AL N L+ PTG GKT +A + I +L R G K++++AP
Sbjct: 20 QLNIAAKALFK--NTLVVLPTGLGKTFIAAMVIANRL---RWFGG-------KVLFLAPT 67
Query: 560 KALVAEVVGNLSNRLQMYDVKVRELSGD-QTLTRQQIEET-QIIVTTPE--KWDIIT-RK 614
K LV + + + ++ L+G+ + R+++ ++ V TP+ + D+ R
Sbjct: 68 KPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRI 127
Query: 615 SGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
D V LLI DE H R V ++ + ++ ++GL+A+
Sbjct: 128 DLDD-----VSLLIFDEAH-----RA-VGNYAYVFVAKEYLRSAKNPLILGLTAS 171
|
Length = 542 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 1e-06
Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 25/146 (17%)
Query: 497 NRVQSRVY-----KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551
N +++R+Y +AL N L+ PTG GKT +A+L I ++L G
Sbjct: 12 NTIEARLYQQLLAATALK--KNTLVVLPTGLGKTAIALLVIAERLH---KKGG------- 59
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD-QTLTRQQI-EETQIIVTTPE--K 607
K++ +AP K LV + L + + K+ +G+ R ++ E+ ++IV TP+ +
Sbjct: 60 KVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIE 119
Query: 608 WDIITRKSGDRTYTQLVKLLIIDEIH 633
D+I R + V LLI DE H
Sbjct: 120 NDLIAG----RISLEDVSLLIFDEAH 141
|
Length = 773 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-06
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 1625 EEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLT-AHLVVVM 1683
E+LK L V LH GL++ ++E + F GKIKV V + G+ L LV++
Sbjct: 4 AELLKE-LGIKVARLHGGLSQEEREEILDKFNNGKIKVLVATDVAERGLDLPGVDLVIIY 62
Query: 1684 GTQYYDGQENAHTDYPVTDLLQMMGHASRP 1713
+ +Q +G A R
Sbjct: 63 D-----------LPWSPASYIQRIGRAGRA 81
|
Length = 82 |
| >gnl|CDD|137505 PRK09751, PRK09751, putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 8e-06
Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 35/220 (15%)
Query: 1362 VAAPTGSGKTICS-EFAILR-------NHQKASETGVMRAVYIAPLEAL----------- 1402
V APTGSGKT+ + +A+ R + ++A + R +YI+P++AL
Sbjct: 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIP 60
Query: 1403 ----AKERYRDWEIKFGQGLGMRVVELTGET--AMDLKLLEK-GQIIISTPEKWDALSRR 1455
A ER R E + +G+R TG+T KL I+I+TPE L
Sbjct: 61 LKGIADERRRRGETEVNLRVGIR----TGDTPAQERSKLTRNPPDILITTPESL-YLMLT 115
Query: 1456 WKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514
+ R+ ++ V IIDE+H + G + G L + + R+ + +I LS ++ +A
Sbjct: 116 SRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRI---GLSATVRSA 172
Query: 1515 KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEA 1554
D+ ++G PP +R + I + ++ + +
Sbjct: 173 SDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSS 212
|
Length = 1490 |
| >gnl|CDD|187770 cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3 | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 8e-06
Identities = 73/403 (18%), Positives = 122/403 (30%), Gaps = 116/403 (28%)
Query: 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV---------- 563
+++ APTG GKT A+L AL+ + +++ P +A +
Sbjct: 2 LVIEAPTGYGKTEAALL-----WALHSLKSQKAD----RVIIALPTRATINAMYRRAKEA 52
Query: 564 --AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEE-----TQIIVTTPEKWDI-ITRKS 615
+ + S + I V T ++ + +
Sbjct: 53 FGETGLYHSSILSSRIKEMGDSEEFEHLFPLYIHSNDTLFLDPITVCTIDQVLKSVFGEF 112
Query: 616 GDRTYTQL---VKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVG-----LS 667
G +T LLI DE+H + T+ I E ++ +S
Sbjct: 113 GHYEFTLASIANSLLIFDEVHFYDEY-----------TLALILAVLEVLKDNDVPILLMS 161
Query: 668 ATLPNYEDVALFLRVNLEKGLFYFDN-SYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEK 726
ATLP FL+ EK + +N P + + + L
Sbjct: 162 ATLPK------FLKEYAEKIGYVEENEPLDLKPNERAPFIKIESDKVGEISSLERL---- 211
Query: 727 VVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKS 786
+ + V I V+ T A+ LKE EI+
Sbjct: 212 LEFIKKGGSVAIIVN----TVDRAQEFYQQ----------LKEKGPEEEIM--------- 248
Query: 787 NDLKDLLPYGFAIHHAGMTRGDRQLVEDL----FGDGHVQVLVSTATLAWGVNLPAHTVI 842
+ H+ T DR E F V+V+T + +++ +I
Sbjct: 249 ------------LIHSRFTEKDRAKKEAELLLEFKKSEKFVIVATQVIEASLDISVDVMI 296
Query: 843 IKGTQIYNPEKGAWTELSPLD-IMQMLGRAGRPQYDSYGEGII 884
TEL+P+D ++Q LGR R YGE
Sbjct: 297 --------------TELAPIDSLIQRLGRLHR-----YGEKNG 320
|
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I. Length = 353 |
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-05
Identities = 37/192 (19%), Positives = 65/192 (33%), Gaps = 11/192 (5%)
Query: 69 EEKLKKSAKKKKERDPDADAAAASEGTYQPKTKETRAAYEAMLSVIQQQLGGQPLNIVSG 128
EE+ KK KK + E + E++ + + L G +
Sbjct: 13 EEEAKKKLKKLAAKSKSKGFITKEE---IKEALESKKKTPEQIDQVLIFLSGMVKDTDDA 69
Query: 129 AADEILAVLKNDAVKNPDKKKEIEKLLNPIPNHVFDQLVSIGKLITDYQDAGDA-----A 183
+I A K K +K L + + K D D +
Sbjct: 70 TESDIPKKKTKTAAKAAAAKAPAKKKLKDELD---SSKKAEKKNALDKDDDLNYVKDIDV 126
Query: 184 GNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEEEDVAEPNASGAMQMGG 243
N A + +D DDD + +++DDDE++ + D + D+E+EE
Sbjct: 127 LNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDD 186
Query: 244 GIDDDDESGDAN 255
+ D+D+S
Sbjct: 187 FVWDEDDSEALR 198
|
Length = 509 |
| >gnl|CDD|233483 TIGR01587, cas3_core, CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-05
Identities = 75/408 (18%), Positives = 131/408 (32%), Gaps = 122/408 (29%)
Query: 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP-----------MKAL 562
+++ APTG GKT A+L AL+ + +++ P K L
Sbjct: 2 LVIEAPTGYGKTEAALL-----WALHSIKSQKAD----RVIIALPTRATINAMYRRAKEL 52
Query: 563 VAEVVGNLSNRLQMYDVKVRELSGD----QTLTRQQIEE---TQIIVTTPEKWDI-ITRK 614
+G L + +K S + L ++ I V T ++ + +
Sbjct: 53 FGSNLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGE 112
Query: 615 SGDRTYTQLV---KLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVG-----L 666
G +T LLI DE+H + T+ I E ++ +
Sbjct: 113 FGHYEFTLASIANSLLIFDEVHFYDEY-----------TLALILAVLEVLKDNDVPILLM 161
Query: 667 SATLPNYEDVALFLRVNLEKGLFYFDNS---YRPVPLSQQY-IGIQVKKPLQRFQLMNDL 722
SATLP FL+ EK + N + +++ + + L
Sbjct: 162 SATLPK------FLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERL 215
Query: 723 CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD 782
+ + ++ I V+ T A+ EN
Sbjct: 216 ----LEFIKKGGKIAIIVN----TVDRAQEFYQQLKENA--------------------- 246
Query: 783 MVKSNDLKDLLPYGFAIHHAGMTRGDR-----QLVEDLFGDGHVQVLVSTATLAWGVNLP 837
+ LL H+ T DR +L+E+ V+V+T + +++
Sbjct: 247 ---PEEEIMLL-------HSRFTEKDRAKKEAELLEE-MKKNEKFVIVATQVIEASLDIS 295
Query: 838 AHTVIIKGTQIYNPEKGAWTELSPLD-IMQMLGRAGRPQYDSYGEGII 884
A +I TEL+P+D ++Q LGR R YG
Sbjct: 296 ADVMI--------------TELAPIDSLIQRLGRLHR-----YGRKNG 324
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model [Mobile and extrachromosomal element functions, Other]. Length = 358 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 4e-05
Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 15/123 (12%)
Query: 1357 DDNVLVAAPTGSGKTICSEFAIL-RNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415
N LV PTG GKT + I R H+K + + +AP + L ++ + KF
Sbjct: 29 KKNTLVVLPTGLGKTAIALLVIAERLHKKGG-----KVLILAPTKPLVEQHAEFFR-KFL 82
Query: 1416 QGLGMRVVELTGETAMD--LKLLEKGQIIISTPE--KWDALSRRWKQRKYVQQVSLFIID 1471
++V TGE + + +L EK ++I++TP+ + D ++ R ++ VSL I D
Sbjct: 83 NIPEEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRIS----LEDVSLLIFD 138
Query: 1472 ELH 1474
E H
Sbjct: 139 EAH 141
|
Length = 773 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 6e-05
Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 33/192 (17%)
Query: 490 FKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHS 549
F+ T +Q+R LS D ++ A TG+GKT ++ IL++L + DG
Sbjct: 19 FEKPTP---IQARAIPPLLSGRD-VIGQAQTGSGKTAAFLIPILEKLDPSPKKDG----- 69
Query: 550 NYKIVYVAPMKAL---VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEE----TQIIV 602
+ + +AP + L +AEV L + ++KV + G ++ +QI + I+V
Sbjct: 70 -PQALILAPTRELALQIAEVARKLG---KHTNLKVVVIYGGTSI-DKQIRKLKRGPHIVV 124
Query: 603 TTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQI-ETTKEH 660
TP + D++ R D VK L++DE + L+ +R+I + +
Sbjct: 125 ATPGRLLDLLERGKLD---LSKVKYLVLDEADRM-------LDMGFEDQIREILKLLPKD 174
Query: 661 IRLVGLSATLPN 672
+ + SAT+P
Sbjct: 175 RQTLLFSATMPK 186
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|218538 pfam05285, SDA1, SDA1 | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 7e-04
Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 8/94 (8%)
Query: 176 YQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMV--------QEEDEEEE 227
+ + A G + DDD E+E +D++ + + + + + D E+E
Sbjct: 76 EKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDE 135
Query: 228 EDVAEPNASGAMQMGGGIDDDDESGDANEGMSLN 261
E+ E + ++DE A E +
Sbjct: 136 EEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEA 169
|
This family consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus. Length = 317 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 7e-04
Identities = 35/173 (20%), Positives = 61/173 (35%), Gaps = 34/173 (19%)
Query: 505 KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564
+ ++ PTGAGKT VA + +L + + P K L+
Sbjct: 49 VKNRRTERRGVIVLPTGAGKTVVA-AEAIAEL-------------KRSTLVLVPTKELLD 94
Query: 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQL- 623
+ L L + D ++ G +++E ++ V T + R+ +
Sbjct: 95 QWAEALKKFLLLND-EIGIYGGG----EKELEPAKVTVAT---VQTLARRQLLDEFLGNE 146
Query: 624 VKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDV 676
L+I DE+H L R + +E +GL+AT ED
Sbjct: 147 FGLIIFDEVHHLPAP--------SYRRI--LELLSAAYPRLGLTATPE-REDG 188
|
Length = 442 |
| >gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 8e-04
Identities = 51/255 (20%), Positives = 88/255 (34%), Gaps = 67/255 (26%)
Query: 59 RAFRGRPPELEEKLKKS------------AKKKKERDPDADAAAASEGTYQPKTKETRAA 106
RA R R PEL + L A + D D A AA G ++ +A
Sbjct: 51 RANRARLPELPKHLTDKEIALTRGLGDSMALRLACHDADCHAVAAPIG------QDAQAI 104
Query: 107 YEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDA------VKNPDKKKEI------EKL 154
++A+ + +G + V+ +L + A K +E EKL
Sbjct: 105 FDAVEQARVEAIGAAAMPGVAKNLSAMLEEKYDKANFSKRTDKEDAPLEEAVALLVREKL 164
Query: 155 LNPIPNHVFDQLVSIGKLITDYQDAGDAAGNDAANGGEDLDD-------------DMGVA 201
P +++ + + + D AG D ++DD M +A
Sbjct: 165 TGDAPPDSAGKVLDLWR-----DEIEDKAGEDLDGLAAEIDDQQAFARVVRDMLGSMDMA 219
Query: 202 VEF-----------EENDDDEEESDLDMVQEEDEEEEEDVAEPN----ASGAMQMG---- 242
E E+ DDD+ +++ D +E E D +E + G + G
Sbjct: 220 EETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDA 279
Query: 243 GGIDDDDESGDANEG 257
+D ES +++E
Sbjct: 280 AEASEDSESDESDED 294
|
Length = 620 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 0.001
Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 19/125 (15%)
Query: 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416
N LV PTG GKT + I + +++AP + L + +
Sbjct: 29 FKNTLVVLPTGLGKTFIAAMVIANRLRWFGGK----VLFLAPTKPLVLQHAE----FCRK 80
Query: 1417 GLGM---RVVELTGETAMD--LKLLEKGQIIISTPE--KWDALSRRWKQRKYVQQVSLFI 1469
G+ + LTGE + +L K ++ ++TP+ + D + R VSL I
Sbjct: 81 VTGIPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDD----VSLLI 136
Query: 1470 IDELH 1474
DE H
Sbjct: 137 FDEAH 141
|
Length = 542 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 0.001
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 18/123 (14%)
Query: 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415
T+ ++ PTG+GKT+ + AI + + + P + L + +
Sbjct: 54 TERRGVIVLPTGAGKTVVAAEAI----AELKR----STLVLVPTKELLDQWAEALKKFL- 104
Query: 1416 QGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQ-QVSLFIIDELH 1474
L + G K LE ++ ++T L+RR +++ + L I DE+H
Sbjct: 105 -LLNDEIGIYGGGE----KELEPAKVTVAT---VQTLARRQLLDEFLGNEFGLIIFDEVH 156
Query: 1475 LIG 1477
+
Sbjct: 157 HLP 159
|
Length = 442 |
| >gnl|CDD|233069 TIGR00643, recG, ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 0.002
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 12/107 (11%)
Query: 775 EILQSHTDMVKSNDLKDLLP-YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
E L LK P Y + H M +++ V + F +G V +LV+T + G
Sbjct: 462 EKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVG 521
Query: 834 VNLPAHTVIIKGTQIYNPEK-GAWTELSPLDIMQMLGRAGRPQYDSY 879
V++P TV++ I + E+ G LS L Q+ GR GR + SY
Sbjct: 522 VDVPNATVMV----IEDAERFG----LSQLH--QLRGRVGRGDHQSY 558
|
[DNA metabolism, DNA replication, recombination, and repair]. Length = 630 |
| >gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.003
Identities = 28/129 (21%), Positives = 45/129 (34%), Gaps = 25/129 (19%)
Query: 112 SVIQQQLGGQ-PLNIVSGAADEILAVLKNDAVKNPDKKKEI-----EKLLNPIPNHVFDQ 165
S +QQQ G+ P GA D+ L + ++ I + + Q
Sbjct: 174 SQLQQQPNGETPPQQTDGAGDDESEALVRLREADGTLEQRIKGAEGGGAMKVL-----KQ 228
Query: 166 LVSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDL----DMVQE 221
K A D + ++ D +++D+D ESDL D V +
Sbjct: 229 PKKQAKSSK----RRTIAQIDGIDSDDEGDGSD------DDDDEDAIESDLDDSDDDVSD 278
Query: 222 EDEEEEEDV 230
ED E+ D
Sbjct: 279 EDGEDLFDT 287
|
Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2158 | |||
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 100.0 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 100.0 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 100.0 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 100.0 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 100.0 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 100.0 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 100.0 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 100.0 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 100.0 | |
| smart00611 | 312 | SEC63 Domain of unknown function in Sec63p, Brr2p | 100.0 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 100.0 | |
| PF02889 | 314 | Sec63: Sec63 Brl domain; InterPro: IPR004179 This | 100.0 | |
| smart00611 | 312 | SEC63 Domain of unknown function in Sec63p, Brr2p | 100.0 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 100.0 | |
| PF02889 | 314 | Sec63: Sec63 Brl domain; InterPro: IPR004179 This | 100.0 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 100.0 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 100.0 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| KOG4434 | 520 | consensus Molecular chaperone SEC63, endoplasmic r | 100.0 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 100.0 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 100.0 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 100.0 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 100.0 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 100.0 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 100.0 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 100.0 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 100.0 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 100.0 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 100.0 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 100.0 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 100.0 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 100.0 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 100.0 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 100.0 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 100.0 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 100.0 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 100.0 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 100.0 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 100.0 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 100.0 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 100.0 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 100.0 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 100.0 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 100.0 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 100.0 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 100.0 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 100.0 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 100.0 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 100.0 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 100.0 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 100.0 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 100.0 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 100.0 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 100.0 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 100.0 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 100.0 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 100.0 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 100.0 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 99.98 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.98 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 99.98 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.98 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.98 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 99.97 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.97 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.97 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.97 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.97 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.97 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 99.97 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.97 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 99.97 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.97 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.97 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.97 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.97 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.96 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.96 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.96 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 99.96 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.96 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.96 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.96 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.96 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.96 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.96 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 99.96 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 99.95 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.95 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 99.95 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.95 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 99.95 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.95 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 99.95 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.95 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.94 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.94 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.94 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.94 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.94 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.94 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.94 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.94 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 99.94 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.93 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.93 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.93 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.93 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.93 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.93 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 99.93 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.93 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.93 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.93 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.93 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 99.92 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.92 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.92 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.92 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.92 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 99.91 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 99.91 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.91 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.91 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.91 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.91 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.91 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 99.91 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.9 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.89 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.89 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 99.88 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.88 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 99.88 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.88 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.88 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 99.88 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.88 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.87 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.86 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 99.86 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 99.86 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.85 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.84 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.84 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.83 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.83 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.83 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 99.83 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.82 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.81 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.81 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.8 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.8 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.8 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.78 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.78 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.78 | |
| COG5407 | 610 | SEC63 Preprotein translocase subunit Sec63 [Intrac | 99.77 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.77 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.77 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.77 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.74 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.74 | |
| KOG4434 | 520 | consensus Molecular chaperone SEC63, endoplasmic r | 99.72 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.71 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.7 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.69 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 99.67 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.66 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.63 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.63 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.62 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.6 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 99.59 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 99.59 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.59 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 99.58 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.56 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.56 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 99.55 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.54 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.54 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.54 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.53 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.52 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.51 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.5 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.49 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.48 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.47 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.47 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.46 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 99.42 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.41 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.4 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.4 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.4 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 99.4 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 99.39 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.33 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.32 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.31 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.3 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 99.3 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.29 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.27 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 99.27 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.26 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.26 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 99.25 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 99.25 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.24 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.24 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 99.22 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 99.22 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 99.21 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.21 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 99.18 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.18 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 99.17 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 99.17 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 99.16 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 99.14 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 99.07 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 99.05 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 99.04 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 99.04 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 99.04 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 99.04 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 99.04 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 98.99 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 98.97 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 98.97 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 98.95 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 98.94 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 98.84 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 98.83 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 98.76 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 98.68 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 98.65 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 98.64 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 98.61 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 98.61 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 98.59 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 98.56 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 98.51 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 98.48 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 98.46 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 98.45 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 98.42 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.37 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.37 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.36 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.36 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 98.27 | |
| COG5407 | 610 | SEC63 Preprotein translocase subunit Sec63 [Intrac | 98.25 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 98.23 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 98.2 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 98.19 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 98.16 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 98.04 | |
| KOG2340 | 698 | consensus Uncharacterized conserved protein [Funct | 97.96 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 97.89 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 97.86 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 97.83 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 97.82 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 97.79 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 97.69 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 97.66 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 97.64 | |
| KOG2340 | 698 | consensus Uncharacterized conserved protein [Funct | 97.62 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 97.62 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 97.61 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 97.56 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 97.56 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 97.54 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 97.5 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 97.45 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 97.42 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 97.36 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 97.27 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 97.19 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 97.19 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 97.18 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 97.16 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 97.12 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 97.05 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 97.04 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 97.03 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 96.97 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 96.94 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 96.88 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 96.86 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 96.73 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 96.73 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 96.7 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 96.56 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 96.54 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 96.53 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 96.52 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 96.49 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 96.47 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 96.34 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 96.3 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 96.29 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 96.26 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 96.19 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 96.18 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 96.0 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 95.99 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 95.89 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 95.88 | |
| PRK06526 | 254 | transposase; Provisional | 95.88 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 95.87 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 95.83 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 95.76 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 95.74 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 95.71 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 95.7 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 95.69 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 95.67 | |
| PRK08181 | 269 | transposase; Validated | 95.62 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 95.6 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 95.59 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 95.56 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 95.56 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 95.55 | |
| PRK12377 | 248 | putative replication protein; Provisional | 95.5 | |
| PRK12377 | 248 | putative replication protein; Provisional | 95.41 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 95.4 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 95.38 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 95.34 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 95.19 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 95.13 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 95.1 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 95.01 | |
| PRK06526 | 254 | transposase; Provisional | 94.97 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 94.93 | |
| PRK08181 | 269 | transposase; Validated | 94.88 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 94.87 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 94.71 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 94.7 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 94.64 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 94.62 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 94.56 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 94.56 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 94.54 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 94.49 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 94.46 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 94.45 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 94.43 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 94.22 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 94.08 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 94.07 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 94.07 | |
| PRK08116 | 268 | hypothetical protein; Validated | 94.03 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 93.98 | |
| PF14520 | 60 | HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU | 93.94 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 93.93 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 93.92 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 93.88 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 93.84 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 93.8 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 93.78 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 93.77 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 93.76 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 93.62 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 93.61 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 93.61 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 93.53 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 93.51 | |
| COG1444 | 758 | Predicted P-loop ATPase fused to an acetyltransfer | 93.51 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 93.49 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 93.44 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 93.38 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 93.36 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 93.36 | |
| PRK08727 | 233 | hypothetical protein; Validated | 93.33 | |
| PF05127 | 177 | Helicase_RecD: Helicase; InterPro: IPR007807 This | 93.33 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 93.33 | |
| PRK08116 | 268 | hypothetical protein; Validated | 93.31 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 93.23 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 93.2 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 93.19 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 93.18 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 93.12 | |
| PF03796 | 259 | DnaB_C: DnaB-like helicase C terminal domain; Inte | 93.11 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 93.08 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 93.06 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 93.06 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 93.03 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 93.03 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 93.02 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 93.01 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 92.97 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 92.96 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 92.96 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 92.92 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 92.89 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 92.86 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 92.84 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 92.81 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 92.79 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 92.77 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 92.77 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 92.76 | |
| TIGR01547 | 396 | phage_term_2 phage terminase, large subunit, PBSX | 92.72 | |
| COG4962 | 355 | CpaF Flp pilus assembly protein, ATPase CpaF [Intr | 92.7 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 92.61 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 92.58 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 92.57 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 92.56 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 92.52 | |
| PRK08727 | 233 | hypothetical protein; Validated | 92.44 | |
| TIGR01547 | 396 | phage_term_2 phage terminase, large subunit, PBSX | 92.41 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 92.29 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 92.26 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 92.25 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 92.18 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 92.16 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 92.15 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 92.13 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 92.07 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 92.04 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 92.03 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 92.02 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 92.01 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 91.97 | |
| PRK05748 | 448 | replicative DNA helicase; Provisional | 91.96 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 91.95 | |
| PF05876 | 557 | Terminase_GpA: Phage terminase large subunit (GpA) | 91.94 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 91.71 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 91.7 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 91.7 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 91.62 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 91.59 |
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-301 Score=2763.76 Aligned_cols=1624 Identities=68% Similarity=1.076 Sum_probs=1497.9
Q ss_pred HHHHHHhhhcccccccccCCCcCCCCCCCCCCCcceeecCCCCCccchhcccccCCCcchhhhhccCCCCccccccCCCC
Q 000114 166 LVSIGKLITDYQDAGDAAGNDAANGGEDLDDDMGVAVEFEENDDDEEESDLDMVQEEDEEEEEDVAEPNASGAMQMGGGI 245 (2158)
Q Consensus 166 l~~l~k~ItDy~~~~~~~~~~~~~~~~~~d~~~gv~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (2158)
||+|+|+||||...++. ++..+..+++..||+|.|++.|++++++..+.++++.++|++...+......++-....
T Consensus 1 lV~l~k~itdy~~~~~s----k~~~d~~~~~~e~v~v~~~e~dde~~~~l~~~vkse~~ed~~~~~ee~~k~~kq~~~~~ 76 (1674)
T KOG0951|consen 1 LVKLGKLITDYELEQDS----KKVMDIGIDAAEGVEVEVEEIDDESLQDLFDMVKSELDEDDKNVKEEVAKFVKQVPAII 76 (1674)
T ss_pred CccccccceeeeecCCc----hhhhhccccccccCccccccCcchhhhHHHHHhhhhhccchhhhhhhhhhhheeccccc
Confidence 58999999999654432 11223456666799999998877776543444543332221111000001111111111
Q ss_pred CCCCCCCCcCCCCCCCcccCChHHHHHHHHhHhccCCChHHHHHHHHHHHHHHhc-CChhHHHHHHHhccCCCChhHHHH
Q 000114 246 DDDDESGDANEGMSLNVQDIDAYWLQRKISQAFDQQIDPQQCQKLAEEVLKILAE-GDDREVENKLLYHLQFDKFSLIKF 324 (2158)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~l~~~~~~~~~~~~~~ 324 (2158)
+ .++...+ ....+++||++||||+|++.|. ++..+|+....+..+|+. .+++++|++|+.+++|++|.||+.
T Consensus 77 k-~el~~d~---q~t~~~dIda~~LQR~irk~ye---la~~~Qe~~~k~~~ilr~~~~~~~lE~~L~~ll~~e~~slV~~ 149 (1674)
T KOG0951|consen 77 K-TELLIDA---QKTRESDIDAPWLQRKIRKVYE---LASRLQEKERKAAEILRTASDDGDLEPKLVVLLQFEKISLVEF 149 (1674)
T ss_pred c-chhhhhh---hhcchhhhhHHHHHHHHHHHHh---cchhhHHHHHHHHHhHhhccCchhhhHHHHHhhhhhhhHHHHH
Confidence 1 1100000 1145899999999999999999 777777777777777777 689999999999999999999999
Q ss_pred HHhchhhhHHHhhhhhcccHHHHHHHHHHHhcCCCCHHHHHHHHHHhHHHHHH-HHhhhhhhHHHHHHHhhhccccCCCC
Q 000114 325 LLRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKE-RQKNLEKSIREEARRLKDESASDGGR 403 (2158)
Q Consensus 325 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (2158)
|++||++|+|||+|++|..++|+..|++.|+..+..+..++.++..+...... ..+.. +.++ .+.++..
T Consensus 150 l~kNr~~i~~~t~L~~aaresE~~siEe~m~~lgp~l~d~V~~~~a~~~~~~~qeek~~-~l~~--~e~~~~~------- 219 (1674)
T KOG0951|consen 150 LRKNRLGIVWCTRLARAARESERLSIEEIMRFLGPELNDIVAKYIATRQTKSEQEEKEK-KLEK--REELLVS------- 219 (1674)
T ss_pred HHhhcchhhHHHHhhhhhccchhccHHHHHhhcChhhHHHHHHHHhhhcccccchhhhh-hhhc--cchhhhh-------
Confidence 99999999999999999888999999999999863367888888765432211 11000 0111 1111110
Q ss_pred CCCCCccCCCCCCcCCccccccccccccccCCcccccccccCCCCCcccccCcceEEecCCCCCCCCCCCCcccccCCCC
Q 000114 404 DRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMP 483 (2158)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~lp 483 (2158)
. ....++...++...++.+|++.++|++|+++|.+++|.+|+||++..+++|+|+|||+++..|+..++.+..++++|
T Consensus 220 -~-~~ls~td~~~v~~~~~~iDLekt~ftEGe~lm~e~~c~lP~GS~rl~kk~yeevhVPa~~~~pf~~~Ekl~~iselP 297 (1674)
T KOG0951|consen 220 -V-IALSKTDVLGVLEMRPVIDLEKTCFTEGEELMQEGKCKLPQGSFRLKKKGYEEVHVPAPSYFPFHKEEKLVKISELP 297 (1674)
T ss_pred -h-hhhcccccccccccCcccchhhhhhhhhhhhhccCceecCCccEEEecCCceEEeCCCCCCCCCCccceeEeecCCc
Confidence 0 01111122335678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHH
Q 000114 484 EWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563 (2158)
Q Consensus 484 ~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa 563 (2158)
+|.+++|.|..+||++|++++++++.+++|+++|||||+|||++|++.||+.+..+.+.++..+...+|++|++|+++||
T Consensus 298 ~Wnq~aF~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLv 377 (1674)
T KOG0951|consen 298 KWNQPAFFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALV 377 (1674)
T ss_pred chhhhhcccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888999999999999999999
Q ss_pred HHHHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhH
Q 000114 564 AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL 643 (2158)
Q Consensus 564 ~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~l 643 (2158)
++++..|.+++.++||+|.++|||.+.+.+++.+++||||||||||+++|+.+++.+.+.++++||||+|++||+|||++
T Consensus 378 qE~VgsfSkRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvL 457 (1674)
T KOG0951|consen 378 QEMVGSFSKRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVL 457 (1674)
T ss_pred HHHHHHHHhhccccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHH
Q 000114 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLC 723 (2158)
Q Consensus 644 e~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~ 723 (2158)
|+|++|+.+..+.....+|++|||||||||+||+.||++++ .++|+|+++|||+|+.++++|+++++..+++++||+.|
T Consensus 458 ESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~-~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~ 536 (1674)
T KOG0951|consen 458 ESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDP-EGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEAC 536 (1674)
T ss_pred HHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCc-ccccccCcccCcCCccceEeccccCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCC
Q 000114 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG 803 (2158)
Q Consensus 724 ~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHag 803 (2158)
|++++++++.+|+|||||||+++.++|+.+++.+...+.+..|++.++.++++++.++....+.+|++++++|||+||||
T Consensus 537 yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAG 616 (1674)
T KOG0951|consen 537 YEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAG 616 (1674)
T ss_pred HHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEE
Q 000114 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (2158)
Q Consensus 804 l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (2158)
|++.+|..++++|++|+++|||||+|+|||||+|+++|||+||++|||++|+|.++|+.+.+||.|||||||+|+.|+++
T Consensus 617 l~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegi 696 (1674)
T KOG0951|consen 617 LNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGI 696 (1674)
T ss_pred CCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchh
Q 000114 884 IITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDIT 963 (2158)
Q Consensus 884 il~~~~~~~~y~~ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~ 963 (2158)
+++.++++++|.+++++|+||||++.++|.|.|||||++| +++.+|+++||+|||+|+||.+||++|+++++ ..|..
T Consensus 697 iit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~G-v~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~--~~d~~ 773 (1674)
T KOG0951|consen 697 IITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLG-VRSARDAVDWLGYTYLYVRMVRNPTLYGVSPE--ASDRL 773 (1674)
T ss_pred eccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcc-hhhHHHHHhhhcceeeEEeeccCchhccCCcc--cchHH
Confidence 9999999999999999999999999999999999999999 99999999999999999999999999999997 44899
Q ss_pred HHHHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCc
Q 000114 964 LGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVT 1043 (2158)
Q Consensus 964 l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~ 1043 (2158)
+++++.+++|+|+..|+++|+|.||+++|.+++|++|+|+|+|||.+.+|..|++.|+++|++++++++||+|+||++++
T Consensus 774 le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~~s 853 (1674)
T KOG0951|consen 774 LEQRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKYVS 853 (1674)
T ss_pred HHHHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccchhhhhhhhccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHhhcCCCCCCCCCCChhHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Q 000114 1044 VRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLA 1123 (2158)
Q Consensus 1044 ~r~~e~~~l~~l~~~~~~~~~~~~~~~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~ri~~a~~ei~~~~~~~~~~ 1123 (2158)
+|++|+.+|++|++++|||+++.+++|++|||+|||+|||+++++||+|.+||+||.|+|+|++||+|||++++||++++
T Consensus 854 vr~~ek~el~~l~~~vpIpire~l~~p~akinvllq~yiS~lk~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~ 933 (1674)
T KOG0951|consen 854 VREEEKMELAKLLERVPIPIRENLDEPSAKINVLLQSYISQLKLEGFALTSDMVYITQSAGRLFRALFEIVLKRGWAGLA 933 (1674)
T ss_pred ccHHHHHHhhhhcccCCcCchhccccchHHHHHHHHHHHhhcccccceeeeeEEEeccchHHHHHHHHHHHhhcCcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHHHhCCCCchhhccCChHHhhhhhcCchhHHHHHHHHhcCCcceEEE
Q 000114 1124 EKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAA 1203 (2158)
Q Consensus 1124 ~~~~~l~~~v~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~P~~~~~~ 1203 (2158)
..+|++|||+++|||+.++|||||+++|.+++++||++.++|.+++||++.|+++++|.|++|+.++.++++||++.+++
T Consensus 934 ~~~l~~ck~v~~r~w~~~~plrqf~~~~~ev~~~lE~k~~~~~r~~~l~~~elg~lI~~~k~G~~l~~~~~~fpk~s~~~ 1013 (1674)
T KOG0951|consen 934 QMALNLCKMVEKRMWPTQTPLRQFKGCPKEVLRRLEKKELPWGRYYDLDPAELGELIGVPKMGKPLHLFIRQFPKLSVSA 1013 (1674)
T ss_pred HHHHHhHhHhhhhcccccCchhhcCCCCHHHHHHHHhccCcchhhhccCHHHHHHHhcCcccChhHHHHHHhcccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCceEEEEEEEecCCcccCCCCCCcccEEEEEEeCCCCeEeeeehhhhhccccccccEEEEEEeccCCCCCeEEE
Q 000114 1204 HVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFI 1283 (2158)
Q Consensus 1204 ~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v 1283 (2158)
++|||||+.++|+|+|+|+|.||+++||..++||++|||.++++|+|+++|.++++ +|++.|++|+++| ||+|||
T Consensus 1014 ~vqpitr~~~~~~l~i~~~f~wd~~vh~~~e~F~i~ved~dge~il~~e~~~~~k~----~~~v~ft~~~~~~-pP~~fi 1088 (1674)
T KOG0951|consen 1014 HVQPITRSVYRVELTITPDFDWDDKVHGSVEPFWIIVEDTDGEKILHHEFFLLKKK----EHTVNFTVPLFEP-PPQYFI 1088 (1674)
T ss_pred eeeeeeeeEEEEEEEEeecccchhhhcccccceEEEEEccCccceeeeeeEEeccC----ceEEEEEeecCCC-CCceEE
Confidence 99999999999999999999999999999999999999999999999999999984 9999999999999 999999
Q ss_pred EEecccccCCCcccccccccccCCCCCCCCCcCCCCCCCcccccChhHHHHHhcCCCCCCHHHHHHHHHHhcCCCcEEEE
Q 000114 1284 RVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVA 1363 (2158)
Q Consensus 1284 ~~vSd~wlg~e~~~~i~~~~l~lp~~~~~~t~lldl~p~~~~~L~~~~~~~l~~gf~~~~~iQ~q~~~~l~~~~~nvli~ 1363 (2158)
+++||+|+++++.+|++|+|+++|+++||||+++|++|+|++++.|+.+..+|. .+||+|+|+|+.+|++++||+|+
T Consensus 1089 ~lvSd~wl~s~~~~Pvsfr~l~lpek~p~pt~lld~~~~~~~~l~N~~~~~lf~---~~n~iqtqVf~~~y~~nd~v~vg 1165 (1674)
T KOG0951|consen 1089 RLVSDRWLHSETVLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPSFETLFQ---DFNPIQTQVFTSLYNTNDNVLVG 1165 (1674)
T ss_pred EEeeccccCCCcccccchhhccCcccCCCCchhhhccccchhccCCcchhhhcc---ccCCceEEEEeeeecccceEEEe
Confidence 999999999999999999999999999999999999999999999999999987 44999999999999999999999
Q ss_pred ccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEE
Q 000114 1364 APTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIII 1443 (2158)
Q Consensus 1364 ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV 1443 (2158)
||+|||||.|+++++++ . .+.+ +++||+|..+.+..++..|.++|+..+|+.++.++|+.+.+.+.++.++|+|
T Consensus 1166 a~~gsgkt~~ae~a~l~---~-~~~~--~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~~~~~vii 1239 (1674)
T KOG0951|consen 1166 APNGSGKTACAELALLR---P-DTIG--RAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLLQKGQVII 1239 (1674)
T ss_pred cCCCCchhHHHHHHhcC---C-ccce--EEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchHHhhhcceEE
Confidence 99999999999999996 2 2334 9999999999999999999999999999999999999999999999999999
Q ss_pred eCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhcc
Q 000114 1444 STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGA 1523 (2158)
Q Consensus 1444 ~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~ 1523 (2158)
+||++|+.+ + ..+.++++|.||+|++++..|+.+|.+++ |++|++|+.+++|+|++|.+++|++|+ +|.
T Consensus 1240 ~tpe~~d~l-q------~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana~d~---ig~ 1308 (1674)
T KOG0951|consen 1240 STPEQWDLL-Q------SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLANARDL---IGA 1308 (1674)
T ss_pred echhHHHHH-h------hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEEeehhhccchhh---ccc
Confidence 999999987 2 57999999999999999889999999999 999999999999999999999999998 999
Q ss_pred CCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCc
Q 000114 1524 TSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGD 1603 (2158)
Q Consensus 1524 ~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~ 1603 (2158)
...++|||.|+.||+|++++++++...++.+++.+|.++.|.++.++...++|++||+|+|+.|+.+|..++.++.++.+
T Consensus 1309 s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~ 1388 (1674)
T KOG0951|consen 1309 SSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEP 1388 (1674)
T ss_pred cccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcH
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999998877633
Q ss_pred ccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEe
Q 000114 1604 QKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVM 1683 (2158)
Q Consensus 1604 ~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~ 1683 (2158)
. ++....++ .+..|++.+.+||+ |.||+..+...+..+|..|.|+|+|.... +||+-..++.||+|
T Consensus 1389 ~---~l~~~~e~--------~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvm 1454 (1674)
T KOG0951|consen 1389 D---YLLSELEE--------CDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVM 1454 (1674)
T ss_pred H---HHHHHHhc--------chHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEe
Confidence 2 32211111 57889999999999 99999999999999999999999999999 99999999999999
Q ss_pred cceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhhCCCccccchhhHHHHHHHHHHhcCc
Q 000114 1684 GTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGV 1763 (2158)
Q Consensus 1684 gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~~~~piES~L~~~l~d~l~aeI~~~~ 1763 (2158)
||++|||++|.|.|||+++++||+|+|.| .|.|+++|+.++++||++|+++|+|+||+|.+.|||++|+||++++
T Consensus 1455 gt~~ydg~e~~~~~y~i~~ll~m~G~a~~-----~~k~vi~~~~~~k~yykkfl~e~lPves~lq~~lhd~~n~ei~~~t 1529 (1674)
T KOG0951|consen 1455 GTQYYDGKEHSYEDYPIAELLQMVGLASG-----AGKCVIMCHTPKKEYYKKFLYEPLPVESHLQHCLHDNFNAEIVTKT 1529 (1674)
T ss_pred cceeecccccccccCchhHHHHHhhhhcC-----CccEEEEecCchHHHHHHhccCcCchHHHHHHHHHhhhhHHHHHHH
Confidence 99999999999999999999999999998 5699999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccHHHHHHHHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhccc
Q 000114 1764 IENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYI 1843 (2158)
Q Consensus 1764 i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I 1843 (2158)
|+|+|||+||+||+|+|||+.+||+||++++++++|+|+|||++||+++.+|+.++||++++.+. .+|+|+++||+
T Consensus 1530 ienkqd~vd~lt~s~~yrr~~~np~yy~l~~v~~~~~S~~lS~lvet~l~dl~~s~~i~v~dad~----~l~~Ias~y~i 1605 (1674)
T KOG0951|consen 1530 IENKQDAVDYLTWSFMYRRLPQNPNYYNLQGVSHRHLSDFLSELVETTLNDLEESKCIEVDDEDD----SLGMIASYYYI 1605 (1674)
T ss_pred HHhHHHHHHHHHHHHhhhccccCcceecccccchhhhhhHHHHHHHHHHHHhhcCceEEeecccc----ccchhhhhcee
Confidence 99999999999999999999999999999999999999999999999999999999999987666 39999999999
Q ss_pred ChhhHHHHHhhcCCCCCHHHH
Q 000114 1844 SYTTIERFSSSLTPKTRMKGL 1864 (2158)
Q Consensus 1844 ~~~T~~~f~~~l~~~~~~~~l 1864 (2158)
+|.|+..|..+++.++..+++
T Consensus 1606 ~y~ti~~f~~~L~~~t~~kgl 1626 (1674)
T KOG0951|consen 1606 SYITIERFSSSLSEKTKMKGL 1626 (1674)
T ss_pred eeEeeehhhhhhhhhhhhhhh
Confidence 999999999999888776666
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-197 Score=1819.29 Aligned_cols=1191 Identities=49% Similarity=0.809 Sum_probs=1124.1
Q ss_pred CCccccccccccccccCCcccccccccCCCCCcccccCcceEEecCCCCCCCCCCCCcccccCCCChhhHhhcCCCCCCC
Q 000114 418 LGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLN 497 (2158)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~lp~~~~~~f~g~~~l~ 497 (2158)
..+++++|--.+.+.. .-++.+.++.+|+|+.+...+.|||+.+|+....+ ....++++|++||+..+..|.+|++||
T Consensus 35 ~~~~~vf~~~~~~~~~-~~~~~~~k~~lp~~~~r~~~~~~eE~~~P~s~~~~-~~~~k~~~isdld~~~rk~~f~f~~fN 112 (1230)
T KOG0952|consen 35 IYYPHVFESRGLGMTD-AIFIIGIKFTLPEGSEREDYKTYEEVKIPASVPMP-MDGEKLLSISDLDDVGRKGFFSFEEFN 112 (1230)
T ss_pred ccchhHHHhhhhccch-hhhhccceEeccCCccccccCcceEEecCccCCCc-cccccceeEEecchhhhhhcccHHHHH
Confidence 3456777655444332 23455669999999999999999999999987777 566788899999999998888999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccC
Q 000114 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY 577 (2158)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~ 577 (2158)
.+|+.|||.++++++|+|||||||||||.+|+|+||+.+.++. ..+.+..+++|+|||+||||||.|+++.|.++|.++
T Consensus 113 ~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~-~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~ 191 (1230)
T KOG0952|consen 113 RIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHE-EQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL 191 (1230)
T ss_pred HHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhc-cccccccCCceEEEEechHHHHHHHHHHHhhhcccc
Confidence 9999999999999999999999999999999999999999843 236677889999999999999999999999999999
Q ss_pred CcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccC-CCccccccceEEeecccccccCChhhHHHHHHHHHHHHhh
Q 000114 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSG-DRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIET 656 (2158)
Q Consensus 578 gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~-~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~ 656 (2158)
|++|.++|||+++.+.++..++|||+||||||+++|++. +..+++.|+||||||+|+|+|+|||++|.|++|+++.++.
T Consensus 192 gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~ves 271 (1230)
T KOG0952|consen 192 GISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVES 271 (1230)
T ss_pred cceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHh
Confidence 999999999999999889999999999999999999984 4677899999999999999999999999999999999999
Q ss_pred ccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhC-CCe
Q 000114 657 TKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAG-KHQ 735 (2158)
Q Consensus 657 ~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~~ 735 (2158)
.+..+||||||||+||++|||.||++++..++|+|+..|||+|+.+.++|.+.++.......+.+.||+++.+... ++|
T Consensus 272 sqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~q 351 (1230)
T KOG0952|consen 272 SQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQ 351 (1230)
T ss_pred hhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCe
Confidence 9999999999999999999999999999999999999999999999999999886666778889999999988776 789
Q ss_pred EEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHH
Q 000114 736 VLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDL 815 (2158)
Q Consensus 736 vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~ 815 (2158)
++||||+|+++.++|+.|.+.+........|++. ..++.+++|++.|+++|||||.++||..+++.
T Consensus 352 VlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~--------------~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 352 VLVFVHSRNETIRTAKKLRERAETNGEKDLFLPS--------------PRNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred EEEEEecChHHHHHHHHHHHHHHhcCcccccCCC--------------hhhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 9999999999999999999998877766666543 25678999999999999999999999999999
Q ss_pred HhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHH
Q 000114 816 FGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 816 F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (2158)
|..|.++|||||+|||||||+||+.|||+||+.||..+|++.++++.|++|++|||||||||..|.++|+|+.+.+++|.
T Consensus 418 F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~ 497 (1230)
T KOG0952|consen 418 FKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYE 497 (1230)
T ss_pred HhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHH
Q 000114 896 SLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTA 975 (2158)
Q Consensus 896 ~ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a 975 (2158)
++++++.||||+|..+|.|||||||++|||.|+++|++||+|||+|+||.+||..||+..+.+..||.+..++.+++..+
T Consensus 498 sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~ 577 (1230)
T KOG0952|consen 498 SLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVA 577 (1230)
T ss_pred HHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHH
Q 000114 976 ATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKL 1055 (2158)
Q Consensus 976 ~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l 1055 (2158)
+..|.+.+||.+|..++.+.+|++||+||+|||+|+||+.|++..++.+++.++|.++|+|+||..|++|++|+++|++|
T Consensus 578 ~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l~el 657 (1230)
T KOG0952|consen 578 AMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVREEEKKELKEL 657 (1230)
T ss_pred HHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcC-C-CCCCCCCCChhHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000114 1056 LDRV-P-IPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMV 1133 (2158)
Q Consensus 1056 ~~~~-~-~~~~~~~~~~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~ri~~a~~ei~~~~~~~~~~~~~~~l~~~v 1133 (2158)
++.. . .|... ...|+|+|+|+|||+..+..|+|++|+.|+.|||+||.||+|+++..++|+.++.+++.|||||
T Consensus 658 ~~~~~~~~~~~~----~~gk~nil~q~~Is~~~~~~f~L~sD~~yv~qna~ri~ralf~i~~~~~~~~~~~~~l~l~k~i 733 (1230)
T KOG0952|consen 658 NEDSCEKYPFGG----EKGKVNILLQAYISRTEVKDFSLMSDSLYVAQNAGRISRALFQIVLRQNWHLLSNRMLNLCKRI 733 (1230)
T ss_pred Hhcccccccccc----cchhHHHHHHhhhhccceeeeeeccCcccccccHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 9763 2 23222 2899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcccCCCCCCccccCCCCHHHHHHHHhCCCCchhhccCChHHhhhhhcCchhHHHHHHHHhcCCcceEEEEEeeccCceE
Q 000114 1134 TKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVL 1213 (2158)
Q Consensus 1134 ~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~P~~~~~~~~~p~~~~~~ 1213 (2158)
+++||...+||+||++... ++ ++++. ++.+|..+++|+++.+.++| ++.++.+|.+++++.++|+|++++
T Consensus 734 er~mw~~~~~l~qf~~~~~---~~-~~~~~---~l~~L~~~~~g~~w~~~~~~---~k~l~~ip~v~v~a~~~p~t~~vl 803 (1230)
T KOG0952|consen 734 ERRMWDFFIPLKQFTLLLN---RK-ERKKL---TLLLLRKDELGELWHNVPYG---LKQLSGIPLVNVEALIQPITRNVL 803 (1230)
T ss_pred HHHHHhhhhhhhcCCcccc---hh-hhhcc---hHHhhhhhhhccccccCchh---hhhhccCCceehhhhhccchhhhh
Confidence 9999999999999998776 55 55543 78899999999999988888 889999999999999999999999
Q ss_pred EEEEEEecCCcccCCCCCCcccEEEEEEeCCCCeEeeeehhhhhccccccccEEEEEEeccCCCCCeEEEEEecccccCC
Q 000114 1214 KVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGS 1293 (2158)
Q Consensus 1214 ~~~l~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSd~wlg~ 1293 (2158)
+|.+.++|+|.|++.+||++..+ +|++|.+...|+|++.+.+.++..++.+.+.|++|+++|+|++++++.+||.|+|+
T Consensus 804 ri~~~~~~~f~w~~~~hg~~g~~-i~~ed~~~~~i~h~e~~~~~~~~~~~s~~lvf~ipis~pLps~~~~~~~s~~~l~~ 882 (1230)
T KOG0952|consen 804 RIEVAITPDFEWNDGIHGKAGQP-IFKEDSSLLPILHIEVFLVNCKKVNESQLLVFTIPISDPLPSQIRHRAVSDNWLGA 882 (1230)
T ss_pred eeeeccCCceEEecccccccCce-eEeecCCCCcceeeeeehhhhhhhhhhhheeEEeecccCCccceEEeeecccccCC
Confidence 99999999999999999998777 99999999999999999999888889999999999999999999999999999999
Q ss_pred CcccccccccccCCCCCCCCCcCCCCCCCcccccChhHHHHHhcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHH
Q 000114 1294 QTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTIC 1373 (2158)
Q Consensus 1294 e~~~~i~~~~l~lp~~~~~~t~lldl~p~~~~~L~~~~~~~l~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~ 1373 (2158)
+...+++++|+++|+..++.|++++++|+|..+|.+..++.+|+ .|+|+|++.|.++|+.+.|+++.+|||+|||++
T Consensus 883 e~~~~~s~~~~il~~~~~~~t~ll~l~plp~~~L~~~~~e~~~~---~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ 959 (1230)
T KOG0952|consen 883 ETVYPLSFQHLILPDNEPPLTELLDLRPLPSSALKNVVFEALYK---YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVV 959 (1230)
T ss_pred ceeccccccceeccccccccccccccCCCcchhhccccHHHhhc---ccCCccceEEEEEeecchhhhhcCCccCcchhH
Confidence 99999999999999999999999999999999999999999987 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHH
Q 000114 1374 SEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALS 1453 (2158)
Q Consensus 1374 a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~ 1453 (2158)
|++++++.+.. .+++ +++||+|.++|+.+..++|.+++... |+++..++|+...+......++++|+||++|+.++
T Consensus 960 ae~a~~~~~~~-~p~~--kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~ 1035 (1230)
T KOG0952|consen 960 AELAIFRALSY-YPGS--KVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTPDVKAVREADIVITTPEKWDGIS 1035 (1230)
T ss_pred HHHHHHHHhcc-CCCc--cEEEEcCCchhhcccccchhhhcccC-CceeEeccCccCCChhheecCceEEcccccccCcc
Confidence 99999998887 4455 99999999999999999999888766 99999999999999888999999999999999999
Q ss_pred hhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCC
Q 000114 1454 RRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPP 1533 (2158)
Q Consensus 1454 r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~ 1533 (2158)
|.|..++.+++++++|+||.|++++.+||++|.+++++.++..+++..+|++++|..+.|+.|+++|++.... +||.|
T Consensus 1036 Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~~~~--~nf~~ 1113 (1230)
T KOG0952|consen 1036 RSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNIKDM--YNFRP 1113 (1230)
T ss_pred ccccchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHHHHHhCCCCc--CCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999886 99999
Q ss_pred CCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCc
Q 000114 1534 GVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPA 1613 (2158)
Q Consensus 1534 ~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~ 1613 (2158)
..||+|+++++++++..+++.++..|++|+++++..+ ++.+|+|||++++++++.+|..|+..+..+.++.+ |+.+++
T Consensus 1114 svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~-sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~-fl~~de 1191 (1230)
T KOG0952|consen 1114 SVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTH-SPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQ-FLNMDE 1191 (1230)
T ss_pred ccccCCceEeecCCCchhcchhhhhcccHHHHHHhcC-CCCCceEEEeecccccccchHhHHhhccCCCCchh-ccCCCH
Confidence 9999999999999999999999999999999999998 99999999999999999999999999999998888 999999
Q ss_pred ccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1614 EEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1614 ~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
.+++.+...++|..|+.++++|++.||+|+...||..+
T Consensus 1192 ~e~e~~~~~~~d~~Lk~tl~Fgi~lhhagl~~~dr~~~ 1229 (1230)
T KOG0952|consen 1192 LELEIIMSKVRDTNLKLTLPFGIGLHHAGLIENDRKIV 1229 (1230)
T ss_pred HHHHHHHHHhcccchhhhhhhhhhhhhhhccccccccC
Confidence 99999999999999999999999999999999998653
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-101 Score=961.93 Aligned_cols=800 Identities=29% Similarity=0.464 Sum_probs=678.4
Q ss_pred ccCCCCCCCCCcCCCCCCCcccccChhHHHHHhcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHH
Q 000114 1304 LILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQ 1383 (2158)
Q Consensus 1304 l~lp~~~~~~t~lldl~p~~~~~L~~~~~~~l~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~ 1383 (2158)
.+.|...+++ ...-.++.++.|. ..++.-|.+|.+||.+|+.||+.+|++++|.|||||||||||.+|+|+|++.+.
T Consensus 76 ~~~P~s~~~~--~~~~k~~~isdld-~~~rk~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik 152 (1230)
T KOG0952|consen 76 VKIPASVPMP--MDGEKLLSISDLD-DVGRKGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIK 152 (1230)
T ss_pred EecCccCCCc--cccccceeEEecc-hhhhhhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHH
Confidence 3456555555 2223444555554 345433445999999999999999999999999999999999999999999998
Q ss_pred hhc-----CCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhc
Q 000114 1384 KAS-----ETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQ 1458 (2158)
Q Consensus 1384 ~~~-----~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~ 1458 (2158)
+.. ..+.+|+|||+|++|||.++++.|.++|+.. |++|.++|||+......+..++|||+|||+||.++|+|..
T Consensus 153 ~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~-gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~ 231 (1230)
T KOG0952|consen 153 EHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL-GISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVG 231 (1230)
T ss_pred hhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc-cceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeecc
Confidence 632 2345799999999999999999999999875 9999999999988776788999999999999999999875
Q ss_pred cc-cccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccC-CCceEecCCCCc
Q 000114 1459 RK-YVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGAT-SHGLFNFPPGVR 1536 (2158)
Q Consensus 1459 ~~-~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~-~~~i~~f~~~~r 1536 (2158)
.. .++.|+||||||+|+|.++|||++|.+++|+....+.....+||||||||+||..|+|.||++. ..++|.|...+|
T Consensus 232 d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yR 311 (1230)
T KOG0952|consen 232 DSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYR 311 (1230)
T ss_pred chhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeeccccc
Confidence 54 5778999999999999999999999999999988888788999999999999999999999997 578999999999
Q ss_pred ccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccc
Q 000114 1537 PVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEV 1616 (2158)
Q Consensus 1537 pv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l 1616 (2158)
|+|+...+.+............+....+..+.+.+..+.+++|||++|..+..+|+.|++.....+..+. |+..
T Consensus 312 PvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~-f~~~----- 385 (1230)
T KOG0952|consen 312 PVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDL-FLPS----- 385 (1230)
T ss_pred ccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccc-cCCC-----
Confidence 9999999999888766666777888889999999999999999999999999999999887766555444 4322
Q ss_pred hhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCc
Q 000114 1617 EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHT 1696 (2158)
Q Consensus 1617 ~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~ 1696 (2158)
-.++.+++++..|+++||+||..+||..+++.|..|.++|||||++++||+|+|+..|||+||+.||.+.+...
T Consensus 386 ------~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~ 459 (1230)
T KOG0952|consen 386 ------PRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFV 459 (1230)
T ss_pred ------hhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCcee
Confidence 25678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhhCCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHH
Q 000114 1697 DYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTW 1776 (2158)
Q Consensus 1697 ~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~ 1776 (2158)
++.+.+++|+.||||||+||..|.++|++...+.++|..+|....||||+|..+|+||+||||+.|||.+..+|++||++
T Consensus 460 dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~y 539 (1230)
T KOG0952|consen 460 DLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKY 539 (1230)
T ss_pred eehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCCccCCC---CCcccHHHHHHHHHHHHHHHHHhCCCeeEcCCC-cccccccchhhhhcccChhhHHHHH
Q 000114 1777 TFMYRRLTQNPNYYNLQG---VSHRHLSDHLSELVENTISDLEASKCIIIEEDM-DLSPSNHGMIASYYYISYTTIERFS 1852 (2158)
Q Consensus 1777 t~~yrRl~~nP~~Y~~~~---~~~~~~~~~l~~lve~~l~~L~~~~~I~~~~~~-~~~~t~lG~i~s~y~I~~~T~~~f~ 1852 (2158)
||||.|+.+||-+||+.. ..+..+..++.+++..++..|.+.++|..|..+ .+.+|.+|++||+|||+|+||+.|+
T Consensus 540 TylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~n 619 (1230)
T KOG0952|consen 540 TYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFN 619 (1230)
T ss_pred eeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHH
Confidence 999999999999999974 355668899999999999999999999998644 5999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHhcCccccCCCCCcchHHHHHHHhhcCccccCCCCCCChHHHHHHHHHHHhcCCCCC-CCchhhH
Q 000114 1853 SSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVG-GNLKLDQ 1931 (2158)
Q Consensus 1853 ~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~~~K~~lLLqAhlsR~~lp-~~l~~D~ 1931 (2158)
+..++.++..++|.++|.|.||+.+.+|++|.+.|++|+...-.+..... .+.|+++|+|+|++|-++- ..|..|.
T Consensus 620 n~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l~el~~~~~~~~~~~~---~~gk~nil~q~~Is~~~~~~f~L~sD~ 696 (1230)
T KOG0952|consen 620 NLPKSFYSEDDILALISMAEEFSQIKVREEEKKELKELNEDSCEKYPFGG---EKGKVNILLQAYISRTEVKDFSLMSDS 696 (1230)
T ss_pred hcccccCCHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHHhcccccccccc---cchhHHHHHHhhhhccceeeeeeccCc
Confidence 98888999999999999999999999999999999999876443332211 2789999999999999886 7899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCC
Q 000114 1932 EEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEME 2011 (2158)
Q Consensus 1932 ~~Il~~~~rLl~a~vdi~~~~g~l~~~l~~m~L~q~i~Q~~w~~~s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~ 2011 (2158)
.++.+++.||.+|+.++....+|-..+.+++.|++||--.+|+...|++|++..-. ++ .+++ . .+..|.
T Consensus 697 ~yv~qna~ri~ralf~i~~~~~~~~~~~~~l~l~k~ier~mw~~~~~l~qf~~~~~---~~-~~~~----~---~l~~L~ 765 (1230)
T KOG0952|consen 697 LYVAQNAGRISRALFQIVLRQNWHLLSNRMLNLCKRIERRMWDFFIPLKQFTLLLN---RK-ERKK----L---TLLLLR 765 (1230)
T ss_pred ccccccHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhhhhhhhcCCcccc---hh-hhhc----c---hHHhhh
Confidence 99999999999999999999999887888999999999999999999999998766 23 2332 1 444444
Q ss_pred HHHHHHHhCCChHHHHHHHHHHccCCceEEEEEEeccccccCCCeEEEEEEEEEcCCCCcccCccccCCCCCCccccEEE
Q 000114 2012 DDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWL 2091 (2158)
Q Consensus 2012 ~~~r~~ll~~~~~~~~~v~~~~~~~P~i~v~~~v~~~~~v~~g~~~~l~v~l~r~~~~~~~~~~v~ap~fp~~k~e~Wwl 2091 (2158)
.++..++....+ ...+.+..+|.++++..+... + -....+.+.+.++.++ .. .+|-+ . |-.+
T Consensus 766 ~~~~g~~w~~~~----~~~k~l~~ip~v~v~a~~~p~---t-~~vlri~~~~~~~f~w--~~-~~hg~---~----g~~i 827 (1230)
T KOG0952|consen 766 KDELGELWHNVP----YGLKQLSGIPLVNVEALIQPI---T-RNVLRIEVAITPDFEW--ND-GIHGK---A----GQPI 827 (1230)
T ss_pred hhhhccccccCc----hhhhhhccCCceehhhhhccc---h-hhhheeeeccCCceEE--ec-ccccc---c----Ccee
Confidence 455555544332 227899999999987665321 1 1233444444443222 11 23321 1 2228
Q ss_pred EEEECCCCeEEEEEEeeccc---ceEEEEEEEecC-CCCceEEEEEEEeCCccccCcEEEEEEE
Q 000114 2092 VVGDTKTNQLLAIKRVSLQR---KSRVKLDFAAPA-EAGKKTYTLYFMCDSYMGCDQEYAFTVD 2151 (2158)
Q Consensus 2092 vvgd~~~~~L~~~krv~~~~---~~~~~l~f~~P~-~~G~~~~~l~~~sDsY~G~D~~~~~~l~ 2151 (2158)
++.|...+.++.++...+.. ..+--+.|..|- .|=.-++..+..||.|+|++..+.+.+.
T Consensus 828 ~~ed~~~~~i~h~e~~~~~~~~~~~s~~lvf~ipis~pLps~~~~~~~s~~~l~~e~~~~~s~~ 891 (1230)
T KOG0952|consen 828 FKEDSSLLPILHIEVFLVNCKKVNESQLLVFTIPISDPLPSQIRHRAVSDNWLGAETVYPLSFQ 891 (1230)
T ss_pred EeecCCCCcceeeeeehhhhhhhhhhhheeEEeecccCCccceEEeeecccccCCceecccccc
Confidence 88898888999988766542 233455566663 3444578999999999999999998765
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-101 Score=962.47 Aligned_cols=792 Identities=29% Similarity=0.496 Sum_probs=710.7
Q ss_pred hcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcC------CCceEEEEEcccHHHHHHHHHH
Q 000114 1336 YQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE------TGVMRAVYIAPLEALAKERYRD 1409 (2158)
Q Consensus 1336 ~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~------~~~~~~v~IaP~raLa~q~~~~ 1409 (2158)
|.|...||++|+.+..+.+.+++|+++|||||+|||.+|++.|++.+..+.. -+.++++||+|+++||+++...
T Consensus 304 F~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgs 383 (1674)
T KOG0951|consen 304 FFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGS 383 (1674)
T ss_pred cccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999987532 1235999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHH
Q 000114 1410 WEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVS 1489 (2158)
Q Consensus 1410 ~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~is 1489 (2158)
+.+++..+ |++|.++|||.....+.+..++|||+|||+||.+.|+...+...+-++++|+||+|++.++|||.+|.++.
T Consensus 384 fSkRla~~-GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVa 462 (1674)
T KOG0951|consen 384 FSKRLAPL-GITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVA 462 (1674)
T ss_pred HHhhcccc-CcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHH
Confidence 99888765 99999999999988889999999999999999999997777788899999999999999999999999999
Q ss_pred HHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHH
Q 000114 1490 RMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQ 1569 (2158)
Q Consensus 1490 rl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~ 1569 (2158)
|+..-.......+|+||||||+||..|++.||++...++|.|.+++||+|+...+.+....+...++.+|+...|+.+.+
T Consensus 463 Rt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~ 542 (1674)
T KOG0951|consen 463 RTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLE 542 (1674)
T ss_pred HHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHH
Confidence 99988877788999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred hHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCC---cccchhhHhhhhHHHHHHHhcccEEEecCCCCHH
Q 000114 1570 HAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP---AEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKT 1646 (2158)
Q Consensus 1570 ~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~---~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~ 1646 (2158)
+ ....|+||||.||+++-.+|+.+...|...+...+ |+... .+-+........+..|++++.+|+++||+||+..
T Consensus 543 ~-agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~-fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~ 620 (1674)
T KOG0951|consen 543 H-AGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSR-FMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRK 620 (1674)
T ss_pred h-CCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHH-HHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcc
Confidence 9 44599999999999999999999887766554444 54332 2334445667788999999999999999999999
Q ss_pred HHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEec
Q 000114 1647 DQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCH 1726 (2158)
Q Consensus 1647 dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~ 1726 (2158)
+|..++++|++|.++|||+|.+++||||+|+++|||+||+.||+..++..+.++.+.+||.|||||+++|+.|..++.+.
T Consensus 621 dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~ 700 (1674)
T KOG0951|consen 621 DRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITD 700 (1674)
T ss_pred hHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhhCCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCccc-HHHHHH
Q 000114 1727 APRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRH-LSDHLS 1805 (2158)
Q Consensus 1727 ~~~~~~~~k~l~~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~-~~~~l~ 1805 (2158)
.++..||...+++.+|+||.+...|.|.+|+||+.| +++..|+++|+.+||+|.|+.+||.-|++....... +...-.
T Consensus 701 ~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~G-v~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~ 779 (1674)
T KOG0951|consen 701 HSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLG-VRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRA 779 (1674)
T ss_pred chHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcc-hhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHh
Confidence 999999999999999999999999999999999999 999999999999999999999999999998654443 444556
Q ss_pred HHHHHHHHHHHhCCCeeEcCCC-cccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHhcCccccCCCCCcchH
Q 000114 1806 ELVENTISDLEASKCIIIEEDM-DLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEE 1884 (2158)
Q Consensus 1806 ~lve~~l~~L~~~~~I~~~~~~-~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~ 1884 (2158)
+++++++..|.++|+|.++... .+++|.+|+|||+|||.+.+|..++..|.+.+..-++..+++.+.||..+++|.+|+
T Consensus 780 ~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~~svr~~ek 859 (1674)
T KOG0951|consen 780 DLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKYVSVREEEK 859 (1674)
T ss_pred hhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccchhhhhhhhccccccCCccHHHH
Confidence 9999999999999999998643 599999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCccccCCCCCCChHHHHHHHHHHHhcCCCCC-CCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 000114 1885 EVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVG-GNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAME 1963 (2158)
Q Consensus 1885 ~~l~~L~~~~p~~~~~~~~~~~~~K~~lLLqAhlsR~~lp-~~l~~D~~~Il~~~~rLl~a~vdi~~~~g~l~~~l~~m~ 1963 (2158)
..|++|..++|++.. ..++.|..|+++|||+|+|++.+. ..|..|..+|-+.+.|+++|+.+|+..+||...+.-++.
T Consensus 860 ~el~~l~~~vpIpir-e~l~~p~akinvllq~yiS~lk~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~~~~l~ 938 (1674)
T KOG0951|consen 860 MELAKLLERVPIPIR-ENLDEPSAKINVLLQSYISQLKLEGFALTSDMVYITQSAGRLFRALFEIVLKRGWAGLAQMALN 938 (1674)
T ss_pred HHhhhhcccCCcCch-hccccchHHHHHHHHHHHhhcccccceeeeeEEEeccchHHHHHHHHHHHhhcCcchHHHHHHH
Confidence 999999999998875 468899999999999999999997 789999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHccCCceEEEE
Q 000114 1964 VSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSF 2043 (2158)
Q Consensus 1964 L~q~i~Q~~w~~~s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~~P~i~v~~ 2043 (2158)
+++|+.+.+|+...||.|+|+...+.++++..+. + .+..+.++++.+...+.+. +..+.-+..|+.+||++.+..
T Consensus 939 ~ck~v~~r~w~~~~plrqf~~~~~ev~~~lE~k~---~-~~~r~~~l~~~elg~lI~~-~k~G~~l~~~~~~fpk~s~~~ 1013 (1674)
T KOG0951|consen 939 LCKMVEKRMWPTQTPLRQFKGCPKEVLRRLEKKE---L-PWGRYYDLDPAELGELIGV-PKMGKPLHLFIRQFPKLSVSA 1013 (1674)
T ss_pred hHhHhhhhcccccCchhhcCCCCHHHHHHHHhcc---C-cchhhhccCHHHHHHHhcC-cccChhHHHHHHhcccceeee
Confidence 9999999999999999999999999999998765 2 3556666777777776653 334566788999999999998
Q ss_pred EEeccccccCCCeEEEEEEEEEcCCCCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeecccceEEEEEEEecC
Q 000114 2044 EVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPA 2123 (2158)
Q Consensus 2044 ~v~~~~~v~~g~~~~l~v~l~r~~~~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~~~~~~~~l~f~~P~ 2123 (2158)
.++. |+ -..+.+.++++.+.+++ ..||. -.|.+|+++.|....+|+...-+-+.+. ...+.|++|-
T Consensus 1014 ~vqp---it-r~~~~~~l~i~~~f~wd---~~vh~------~~e~F~i~ved~dge~il~~e~~~~~k~-~~~v~ft~~~ 1079 (1674)
T KOG0951|consen 1014 HVQP---IT-RSVYRVELTITPDFDWD---DKVHG------SVEPFWIIVEDTDGEKILHHEFFLLKKK-EHTVNFTVPL 1079 (1674)
T ss_pred eeee---ee-eeEEEEEEEEeecccch---hhhcc------cccceEEEEEccCccceeeeeeEEeccC-ceEEEEEeec
Confidence 8865 22 34566777777765442 24663 3478999999998889988776666544 6788888886
Q ss_pred CCCceEEEEEEEeCCccccCcEEEEEEE
Q 000114 2124 EAGKKTYTLYFMCDSYMGCDQEYAFTVD 2151 (2158)
Q Consensus 2124 ~~G~~~~~l~~~sDsY~G~D~~~~~~l~ 2151 (2158)
..|.-.|.+.++||-|+|..-.+++.|+
T Consensus 1080 ~~~pP~~fi~lvSd~wl~s~~~~Pvsfr 1107 (1674)
T KOG0951|consen 1080 FEPPPQYFIRLVSDRWLHSETVLPVSFR 1107 (1674)
T ss_pred CCCCCceEEEEeeccccCCCcccccchh
Confidence 6567789999999999999999999875
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-89 Score=924.61 Aligned_cols=663 Identities=26% Similarity=0.373 Sum_probs=563.6
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
|+....+.+.. ||.+|+|+|++||+..+.+++|++++||||||||++|++|+++++.. ++ ++|||+|+++||.|
T Consensus 8 lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---~~--kal~i~P~raLa~q 82 (737)
T PRK02362 8 LPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---GG--KALYIVPLRALASE 82 (737)
T ss_pred CCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---CC--cEEEEeChHHHHHH
Confidence 34444455544 79999999999999977778899999999999999999999999864 44 89999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCCChH
Q 000114 1406 RYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVL 1484 (2158)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g~~~ 1484 (2158)
++++|+ +|+.. |++|+.++|+...+.+.+..++|+|+|||+|+.+++++ ..++++++++|+||+|++++ .+|+.+
T Consensus 83 ~~~~~~-~~~~~-g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~--~~~l~~v~lvViDE~H~l~d~~rg~~l 158 (737)
T PRK02362 83 KFEEFE-RFEEL-GVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNG--APWLDDITCVVVDEVHLIDSANRGPTL 158 (737)
T ss_pred HHHHHH-HhhcC-CCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcC--hhhhhhcCEEEEECccccCCCcchHHH
Confidence 999999 57653 89999999998877667778899999999999999863 34688999999999999987 589999
Q ss_pred HHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcC----
Q 000114 1485 EVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT---- 1560 (2158)
Q Consensus 1485 e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~---- 1560 (2158)
|.++++++++ ....|+|+||||++|++++++|+++.. +.+.+||+++...+.......+......+.
T Consensus 159 e~il~rl~~~----~~~~qii~lSATl~n~~~la~wl~~~~-----~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~ 229 (737)
T PRK02362 159 EVTLAKLRRL----NPDLQVVALSATIGNADELADWLDAEL-----VDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSK 229 (737)
T ss_pred HHHHHHHHhc----CCCCcEEEEcccCCCHHHHHHHhCCCc-----ccCCCCCCCCeeeEecCCeeccccccccCCCccc
Confidence 9999999876 457899999999999999999998764 677889999987665333222222111121
Q ss_pred hHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhh-------hHHHHHHHhc
Q 000114 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNI-------QEEMLKATLR 1633 (2158)
Q Consensus 1561 k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i-------~d~~L~~~l~ 1633 (2158)
...+..+...+..++++||||+||+.|+.+|..|........ .......+..+.+.+ .+..|..++.
T Consensus 230 ~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~ 303 (737)
T PRK02362 230 DDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTL------TAAERAELAELAEEIREVSDTETSKDLADCVA 303 (737)
T ss_pred hHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcC------CHHHHHHHHHHHHHHHhccCccccHHHHHHHH
Confidence 344555555556789999999999999999999976543210 001112233333333 4567889999
Q ss_pred ccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCC
Q 000114 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRP 1713 (2158)
Q Consensus 1634 ~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~ 1713 (2158)
.||++|||||++.+|..+++.|++|.++|||||++++||||+|+++|||.||++||+.. ++.|++..+|+||+|||||+
T Consensus 304 ~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~-g~~~~s~~~y~Qm~GRAGR~ 382 (737)
T PRK02362 304 KGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGA-GMQPIPVLEYHQMAGRAGRP 382 (737)
T ss_pred hCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCC-CceeCCHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999886 67899999999999999999
Q ss_pred CCCCceEEEEEecCC--hHHHHHHHhh-CCCccccch--hhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCC
Q 000114 1714 LLDNSGKCVILCHAP--RKEYYKKFLY-DAFPVESHL--HHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPN 1788 (2158)
Q Consensus 1714 g~d~~G~~iil~~~~--~~~~~~k~l~-~~~piES~L--~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~ 1788 (2158)
|+|..|.|+++|.+. ..++|++|+. ++.|+||+| ...+.+|++++|+.|++.+++|+++|++|||||++.
T Consensus 383 g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~----- 457 (737)
T PRK02362 383 GLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQT----- 457 (737)
T ss_pred CCCCCceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhc-----
Confidence 999999999999875 4568899984 899999999 468999999999999999999999999999999842
Q ss_pred CccCCCCCcccHHHHHHHHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCCC--CHHHHHH
Q 000114 1789 YYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKT--RMKGLLE 1866 (2158)
Q Consensus 1789 ~Y~~~~~~~~~~~~~l~~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~--~~~~lL~ 1866 (2158)
+.+++++++|++++..|+++|||+.++ +.+.||++|+++|+|||+|.|+..|..+|+... +..++|+
T Consensus 458 ----------~~~~~l~~~v~~~l~~L~~~~~i~~~~-~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~ 526 (737)
T PRK02362 458 ----------DDTGRLERVVDDVLDFLERNGMIEEDG-ETLEATELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLH 526 (737)
T ss_pred ----------cchHHHHHHHHHHHHHHHHCCCeeecC-CeEeEChHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHH
Confidence 235789999999999999999998753 469999999999999999999999999888765 6799999
Q ss_pred HHhcCccccCCCCCcchHHHHHHHh--------hcCccccCCCCCCC--hHHHHHHHHHHHhcCCCCCC-----Cc-hhh
Q 000114 1867 VLASASEYAQLPIRPGEEEVVRRLI--------HHQRFSFENPKFTD--PHVKANALLQAHFSRQQVGG-----NL-KLD 1930 (2158)
Q Consensus 1867 ils~a~Ef~~i~vR~~E~~~l~~L~--------~~~p~~~~~~~~~~--~~~K~~lLLqAhlsR~~lp~-----~l-~~D 1930 (2158)
+||.++||..+|+|++|+..+.++. .++|.++....+.. |++|+++|||+||+|.+++. .+ ..|
T Consensus 527 ~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~ll~~~i~~~~~~~i~~~~~~~~gd 606 (737)
T PRK02362 527 LVCSTPDMYELYLRSGDYEWLNEYLYEHEDELLGDVPSEFEDDEFEDFLSAVKTALLLEDWIDEVDEERITERYGVGPGD 606 (737)
T ss_pred HhhcCccccccccChhHHHHHHHHHHhcccchhccCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCchH
Confidence 9999999999999999999998875 45666554434444 78999999999999998651 12 679
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHhCCCCCccCHHHHhcC
Q 000114 1931 QEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEM 2010 (2158)
Q Consensus 1931 ~~~Il~~~~rLl~a~vdi~~~~g~l~~~l~~m~L~q~i~Q~~w~~~s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~ 2010 (2158)
++.+++++.||++|++++|.. +|+..+..+|+|+|||.||+|++++||+|||||+++++++|.+.| |+|++||+.+
T Consensus 607 l~~~~~~~~~l~~a~~~i~~~-~~~~~~~~~~~l~~~l~~gv~~~~~~L~~ip~i~~~~a~~l~~~g---i~s~~dl~~~ 682 (737)
T PRK02362 607 IRGKVETAEWLLHAAERLASE-LDLDLARAARELEKRVEYGVREELLDLVGLRGVGRVRARRLYNAG---IESRADLRAA 682 (737)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHhCCCHHHHHHhCCCCCCHHHHHHHHHcC---CCCHHHHHhC
Confidence 999999999999999999665 566778999999999999999999999999999999999999999 9999999999
Q ss_pred CHHHHHHHhCCChHHHHHHHHHHccC
Q 000114 2011 EDDERRELLQMSDVQLLDIARFCNRF 2036 (2158)
Q Consensus 2011 ~~~~r~~ll~~~~~~~~~v~~~~~~~ 2036 (2158)
++++...+ +++...++|.+.+..+
T Consensus 683 ~~~~l~~~--~g~~~~~~i~~~~~~~ 706 (737)
T PRK02362 683 DKSVVLAI--LGEKIAENILEQAGRR 706 (737)
T ss_pred CHHHHHHH--HCHHHHHHHHHHhCcc
Confidence 99999888 7777788888887744
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-86 Score=900.76 Aligned_cols=663 Identities=25% Similarity=0.366 Sum_probs=552.0
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
||+++.+.| .||++|+|+|++|++..+.+++|++++||||||||++|++|+++.+.. +.++||++|+
T Consensus 8 lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~-----------~~kal~i~P~ 76 (737)
T PRK02362 8 LPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR-----------GGKALYIVPL 76 (737)
T ss_pred CCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc-----------CCcEEEEeCh
Confidence 688999888 589999999999999877778899999999999999999999999853 2389999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-C
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~ 638 (2158)
++||.|+++.|++ +..+|++|..++|+..........++|+|+|||+|+.+.|+.. .+++++++|||||+|++++ .
T Consensus 77 raLa~q~~~~~~~-~~~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~--~~l~~v~lvViDE~H~l~d~~ 153 (737)
T PRK02362 77 RALASEKFEEFER-FEELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGA--PWLDDITCVVVDEVHLIDSAN 153 (737)
T ss_pred HHHHHHHHHHHHH-hhcCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcCh--hhhhhcCEEEEECccccCCCc
Confidence 9999999999996 4556999999999987766666788999999999999998753 5688999999999999988 7
Q ss_pred ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHH
Q 000114 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL 718 (2158)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 718 (2158)
||+.+|.+++++.+ ..+.+|+|+||||++|.++++.|++.. .+...+||+++...+..............
T Consensus 154 rg~~le~il~rl~~----~~~~~qii~lSATl~n~~~la~wl~~~------~~~~~~rpv~l~~~v~~~~~~~~~~~~~~ 223 (737)
T PRK02362 154 RGPTLEVTLAKLRR----LNPDLQVVALSATIGNADELADWLDAE------LVDSEWRPIDLREGVFYGGAIHFDDSQRE 223 (737)
T ss_pred chHHHHHHHHHHHh----cCCCCcEEEEcccCCCHHHHHHHhCCC------cccCCCCCCCCeeeEecCCeecccccccc
Confidence 99999999998854 356789999999999999999999865 25778899998765432111000000000
Q ss_pred hh----HHHHHHHHHH-hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchh-HHH---HHhhhhccCcchh
Q 000114 719 MN----DLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVS-REI---LQSHTDMVKSNDL 789 (2158)
Q Consensus 719 l~----~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~-~~~---l~~~~~~~~~~~l 789 (2158)
+. ...+..+.+. ..++++||||+||+.|+.+|..|....... +...+... .+. +........+..|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~L 298 (737)
T PRK02362 224 VEVPSKDDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKT-----LTAAERAELAELAEEIREVSDTETSKDL 298 (737)
T ss_pred CCCccchHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHhccCccccHHH
Confidence 00 1122223322 247899999999999999999998754221 00000000 011 1111222356789
Q ss_pred hhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhc
Q 000114 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (2158)
Q Consensus 790 ~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~G 869 (2158)
..++..||++|||||++.+|..+++.|++|.++|||||++++||||+|+++|||+++..||+.. ++.+++..+|+||+|
T Consensus 299 ~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~-g~~~~s~~~y~Qm~G 377 (737)
T PRK02362 299 ADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGA-GMQPIPVLEYHQMAG 377 (737)
T ss_pred HHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCC-CceeCCHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999876 578999999999999
Q ss_pred ccCCCCCCCccEEEEEcCCCc--HHHHHHhh-cCCCcccchhh--HhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHh
Q 000114 870 RAGRPQYDSYGEGIIITGHSE--LRYYLSLM-NQQLPIESQFV--SKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRM 944 (2158)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~~--~~~y~~ll-~~~~pieS~l~--~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~ 944 (2158)
||||+|+|..|.+++++...+ ..+|.+++ ..+.|++|+|. ..|.+++|+||+.|++.+.+|+++|++|||+|++.
T Consensus 378 RAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~ 457 (737)
T PRK02362 378 RAGRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQT 457 (737)
T ss_pred cCCCCCCCCCceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhc
Confidence 999999999999999998753 34577776 58899999995 47999999999999999999999999999999752
Q ss_pred hcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCC
Q 000114 945 LRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTM 1024 (2158)
Q Consensus 945 ~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~ 1024 (2158)
. ..+++.++|++++..|.++|||+.+ ++.+.+|++|+++|+|||+|.|+..|.+.|+...
T Consensus 458 ----------~--------~~~~l~~~v~~~l~~L~~~~~i~~~--~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~ 517 (737)
T PRK02362 458 ----------D--------DTGRLERVVDDVLDFLERNGMIEED--GETLEATELGHLVSRLYIDPLSAAEIIDGLEAAK 517 (737)
T ss_pred ----------c--------chHHHHHHHHHHHHHHHHCCCeeec--CCeEeEChHHHHHHHhcCCHHHHHHHHHHhhhcc
Confidence 0 1245678999999999999999975 3679999999999999999999999999888764
Q ss_pred --CHHHHHHHhhCCccCCCCcCChhHHHHHHHHh--------hcCCCCCCCC-CCC--hhHHHHHHHHHHHcCCCC----
Q 000114 1025 --GDIELCRLFSLSEEFKYVTVRQDEKMELAKLL--------DRVPIPVKES-LEE--PSAKINVLLQAYISQLKL---- 1087 (2158)
Q Consensus 1025 --~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l~--------~~~~~~~~~~-~~~--~~~K~~~llq~~i~~~~~---- 1087 (2158)
+..++|+++|.++||..+++|++|...|.++. .++|.+..+. ++. +..|+++|||+||++.++
T Consensus 518 ~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~ll~~~i~~~~~~~i~ 597 (737)
T PRK02362 518 KPTDLGLLHLVCSTPDMYELYLRSGDYEWLNEYLYEHEDELLGDVPSEFEDDEFEDFLSAVKTALLLEDWIDEVDEERIT 597 (737)
T ss_pred cCchHHHHHHhhcCccccccccChhHHHHHHHHHHhcccchhccCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 78999999999999999999999999998875 4556554432 233 788999999999999996
Q ss_pred CCCcc-cchHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHHHhCCC-Cc
Q 000114 1088 EGLSL-TSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AW 1165 (2158)
Q Consensus 1088 ~~~~l-~~d~~~i~~~a~ri~~a~~ei~~~~~~~~~~~~~~~l~~~v~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~-~~ 1165 (2158)
+.|++ .+|+..++++|.||++|+++||.. +|..++..+++|++|+.+++|++.+||.|+||++++++++|++.|+ ++
T Consensus 598 ~~~~~~~gdl~~~~~~~~~l~~a~~~i~~~-~~~~~~~~~~~l~~~l~~gv~~~~~~L~~ip~i~~~~a~~l~~~gi~s~ 676 (737)
T PRK02362 598 ERYGVGPGDIRGKVETAEWLLHAAERLASE-LDLDLARAARELEKRVEYGVREELLDLVGLRGVGRVRARRLYNAGIESR 676 (737)
T ss_pred HHhCCCchHHHHHHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHhCCCHHHHHHhCCCCCCHHHHHHHHHcCCCCH
Confidence 35777 589999999999999999999876 4557899999999999999999999999999999999999999998 67
Q ss_pred hhhccCChHHhhhhhcCchhHHHHHHHHhcC
Q 000114 1166 ERYYDLSPQELGELIRFPKMGRTLHKFVHQF 1196 (2158)
Q Consensus 1166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 1196 (2158)
+++..+++++|..+++ ++.++.|.+.+..+
T Consensus 677 ~dl~~~~~~~l~~~~g-~~~~~~i~~~~~~~ 706 (737)
T PRK02362 677 ADLRAADKSVVLAILG-EKIAENILEQAGRR 706 (737)
T ss_pred HHHHhCCHHHHHHHHC-HHHHHHHHHHhCcc
Confidence 8888889999999987 68888888887744
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-86 Score=891.79 Aligned_cols=654 Identities=26% Similarity=0.399 Sum_probs=543.4
Q ss_pred ChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHH
Q 000114 1328 RNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2158)
Q Consensus 1328 ~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~ 1406 (2158)
+....+.+.. ||..|+|+|++||+..+.+++|++++||||||||++|++|+++++.. .++ ++|||+|+++|+.|+
T Consensus 9 ~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--~~~--~~l~l~P~~aLa~q~ 84 (720)
T PRK00254 9 DERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--EGG--KAVYLVPLKALAEEK 84 (720)
T ss_pred CHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--cCC--eEEEEeChHHHHHHH
Confidence 3444444444 79999999999999876678899999999999999999999998875 244 999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCCChHH
Q 000114 1407 YRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLE 1485 (2158)
Q Consensus 1407 ~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g~~~e 1485 (2158)
+++|+ .|.. .|++|..++|+...+.+.+..++|+|+|||+|+.++++ ...+++++++||+||+|++++ .+|+.++
T Consensus 85 ~~~~~-~~~~-~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~--~~~~l~~l~lvViDE~H~l~~~~rg~~le 160 (720)
T PRK00254 85 YREFK-DWEK-LGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRH--GSSWIKDVKLVVADEIHLIGSYDRGATLE 160 (720)
T ss_pred HHHHH-HHhh-cCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhC--CchhhhcCCEEEEcCcCccCCccchHHHH
Confidence 99998 4654 48999999999887766677889999999999999885 234688999999999999987 5799999
Q ss_pred HHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEE--EecccccchHHH---HHhcC
Q 000114 1486 VIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIH--IQGVDITNFEAR---MQAMT 1560 (2158)
Q Consensus 1486 ~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~--i~~~~~~~~~~~---~~~~~ 1560 (2158)
.+++++ ..+.|+|++|||++|++++++|+++.. +.+..||+++... ..++........ ...+.
T Consensus 161 ~il~~l-------~~~~qiI~lSATl~n~~~la~wl~~~~-----~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (720)
T PRK00254 161 MILTHM-------LGRAQILGLSATVGNAEELAEWLNAEL-----VVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWE 228 (720)
T ss_pred HHHHhc-------CcCCcEEEEEccCCCHHHHHHHhCCcc-----ccCCCCCCcceeeEecCCeeeccCcchhcchHHHH
Confidence 888765 346899999999999999999998763 5677899988543 222221111000 11122
Q ss_pred hHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCC-cccchhhHhh----hhHHHHHHHhccc
Q 000114 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP-AEEVEPFIDN----IQEEMLKATLRHG 1635 (2158)
Q Consensus 1561 k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~-~~~l~~~~~~----i~d~~L~~~l~~g 1635 (2158)
. .+...+..++++||||+||+.|+.+|..|+..+.. ++..+ ...+..+.+. ..+..|++++..|
T Consensus 229 ~----~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g 297 (720)
T PRK00254 229 S----LVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKR-------FLTKPELRALKELADSLEENPTNEKLKKALRGG 297 (720)
T ss_pred H----HHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHH-------hcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhC
Confidence 2 23333456889999999999999999988765431 22111 1223333332 3457788899999
Q ss_pred EEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCC
Q 000114 1636 VGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLL 1715 (2158)
Q Consensus 1636 v~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~ 1715 (2158)
|++|||||++++|..+++.|++|.++|||||++++||||+|++.|||+++++|++ ..+.++++.+|+||+|||||+|+
T Consensus 298 v~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~--~~~~~~~~~~~~Qm~GRAGR~~~ 375 (720)
T PRK00254 298 VAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSN--FGWEDIPVLEIQQMMGRAGRPKY 375 (720)
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCC--CCceeCCHHHHHHhhhccCCCCc
Confidence 9999999999999999999999999999999999999999999999999999973 35678899999999999999999
Q ss_pred CCceEEEEEecCCh-HHHHHHHhh-CCCccccch--hhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCcc
Q 000114 1716 DNSGKCVILCHAPR-KEYYKKFLY-DAFPVESHL--HHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYN 1791 (2158)
Q Consensus 1716 d~~G~~iil~~~~~-~~~~~k~l~-~~~piES~L--~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~ 1791 (2158)
|..|.|++++...+ +++|++|+. +|.++.|.+ ...|.+|++++|+.+++.++||+++||+|||||+ +||+||+
T Consensus 376 d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~---~~~~~~~ 452 (720)
T PRK00254 376 DEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAH---QRKDLYS 452 (720)
T ss_pred CCCceEEEEecCcchHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHH---hhcChHh
Confidence 99999999998765 567888854 455555555 2456899999999999999999999999999996 6899986
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCC---CCCHHHHHHHH
Q 000114 1792 LQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTP---KTRMKGLLEVL 1868 (2158)
Q Consensus 1792 ~~~~~~~~~~~~l~~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~---~~~~~~lL~il 1868 (2158)
+ .+++++++..|.+++||++++++.+.||++|+++|+|||+|.|+..|...++. +++..++|++|
T Consensus 453 ~------------~~~v~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~ 520 (720)
T PRK00254 453 L------------EEKAKEIVYFLLENEFIDIDLEDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLI 520 (720)
T ss_pred H------------HHHHHHHHHHHHHCCCeEEcCCCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHh
Confidence 4 36899999999999999998777899999999999999999999999988876 67899999999
Q ss_pred hcCccccCCCCCcchHHHHH--------HHhhcCccccCCCCCCC--hHHHHHHHHHHHhcCCCCCCCc------hhhHH
Q 000114 1869 ASASEYAQLPIRPGEEEVVR--------RLIHHQRFSFENPKFTD--PHVKANALLQAHFSRQQVGGNL------KLDQE 1932 (2158)
Q Consensus 1869 s~a~Ef~~i~vR~~E~~~l~--------~L~~~~p~~~~~~~~~~--~~~K~~lLLqAhlsR~~lp~~l------~~D~~ 1932 (2158)
|.|+||..+|+|++|+..+. ++..++|++.+. .+.+ |++|+++|||+||+|.+++..+ ..|++
T Consensus 521 ~~~~e~~~~~~r~~e~~~l~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~k~~~ll~~~~~~~~~~~~~~~~~~~~gd~~ 599 (720)
T PRK00254 521 ASTPDMTPLNYSRKEMEDLLDEAYEMEDRLYFNIPYWEDY-KFQKFLRAFKTAKVLLDWINEVPEGEIVETYNIDPGDLY 599 (720)
T ss_pred hCCccccccCcchhhHHHHHHHHHhhcccccccCCcchhh-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHH
Confidence 99999999999999998888 344445543321 2333 7899999999999999998766 89999
Q ss_pred HHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHhCCCCCccCHHHHh
Q 000114 1933 EVLLSASRLLQAMVDVISS----NGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLV 2008 (2158)
Q Consensus 1933 ~Il~~~~rLl~a~vdi~~~----~g~l~~~l~~m~L~q~i~Q~~w~~~s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~ 2008 (2158)
.+++++.||++||+++++. .+|++ ++. +|+|||+||+|+++++|.|||||++..+++|.++| +.|++|++
T Consensus 600 ~~~~~~~~l~~a~~~i~~~~~~~~~~~~-~l~--~l~~rl~~g~~~~~~~L~~ipgig~~~~~~l~~~g---~~s~~~i~ 673 (720)
T PRK00254 600 RILELADWLMYSLIELYKLFEPKQEVLD-YLE--TLHLRVKHGVREELLELMRLPMIGRKRARALYNAG---FRSIEDIV 673 (720)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcchhHHH-HHH--HHHHHHHcCCCHHHhhhhcCCCCCHHHHHHHHHcc---CCCHHHHH
Confidence 9999999999999999994 44554 443 89999999999999999999999999999999999 99999999
Q ss_pred cCCHHHHHHHhCCChHHHHHHHHHHccC
Q 000114 2009 EMEDDERRELLQMSDVQLLDIARFCNRF 2036 (2158)
Q Consensus 2009 ~~~~~~r~~ll~~~~~~~~~v~~~~~~~ 2036 (2158)
++++++..++.++++...+.|.++++..
T Consensus 674 ~a~~~el~~~~gi~~~~a~~i~~~~~~~ 701 (720)
T PRK00254 674 NAKPSELLKVEGIGAKIVEGIFKHLGVE 701 (720)
T ss_pred hCCHHHHhcCCCCCHHHHHHHHHHhccc
Confidence 9999999998889999999999998844
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-83 Score=863.08 Aligned_cols=658 Identities=26% Similarity=0.374 Sum_probs=533.8
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
+|+.+.+.+ .||++|||+|.++++..+.+++|++++||||||||++|++|+++.+... +.++|||+|+
T Consensus 8 l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~----------~~~~l~l~P~ 77 (720)
T PRK00254 8 VDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE----------GGKAVYLVPL 77 (720)
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc----------CCeEEEEeCh
Confidence 577788877 6999999999999998777778999999999999999999999987642 2489999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-C
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~ 638 (2158)
++|+.|+++.|.. +..+|++|..++|+..........++|+|+|||+|+.+.++.. .+++++++|||||+|++.+ .
T Consensus 78 ~aLa~q~~~~~~~-~~~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~--~~l~~l~lvViDE~H~l~~~~ 154 (720)
T PRK00254 78 KALAEEKYREFKD-WEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGS--SWIKDVKLVVADEIHLIGSYD 154 (720)
T ss_pred HHHHHHHHHHHHH-HhhcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCc--hhhhcCCEEEEcCcCccCCcc
Confidence 9999999999987 4567999999999988766666789999999999998888643 5689999999999999987 6
Q ss_pred ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEe-----eccCChh
Q 000114 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG-----IQVKKPL 713 (2158)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~-----~~~~~~~ 713 (2158)
||+.++.+++++ ...+|+|++|||++|..+++.|++... +...+||+++...... .......
T Consensus 155 rg~~le~il~~l-------~~~~qiI~lSATl~n~~~la~wl~~~~------~~~~~rpv~l~~~~~~~~~~~~~~~~~~ 221 (720)
T PRK00254 155 RGATLEMILTHM-------LGRAQILGLSATVGNAEELAEWLNAEL------VVSDWRPVKLRKGVFYQGFLFWEDGKIE 221 (720)
T ss_pred chHHHHHHHHhc-------CcCCcEEEEEccCCCHHHHHHHhCCcc------ccCCCCCCcceeeEecCCeeeccCcchh
Confidence 999999998875 356899999999999999999998642 5667899988643221 1111111
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCc-hh-HHHHHhhhhccCcchhhh
Q 000114 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDS-VS-REILQSHTDMVKSNDLKD 791 (2158)
Q Consensus 714 ~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~-~~-~~~l~~~~~~~~~~~l~~ 791 (2158)
.....+...+++.+. .++++||||+||+.|+.+|..|...... ++.... .. .+..........+..|++
T Consensus 222 ~~~~~~~~~~~~~i~---~~~~vLVF~~sr~~~~~~a~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 292 (720)
T PRK00254 222 RFPNSWESLVYDAVK---KGKGALVFVNTRRSAEKEALELAKKIKR------FLTKPELRALKELADSLEENPTNEKLKK 292 (720)
T ss_pred cchHHHHHHHHHHHH---hCCCEEEEEcChHHHHHHHHHHHHHHHH------hcCchhHHHHHHHHHHHhcCCCcHHHHH
Confidence 111334444444443 3679999999999999999998765321 111110 00 111111122345678999
Q ss_pred hccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhccc
Q 000114 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (2158)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (2158)
++..||++|||||++++|..+++.|++|.++|||||++++||||+|+++|||+++..|+. .++.++++.+|+||+|||
T Consensus 293 ~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~--~~~~~~~~~~~~Qm~GRA 370 (720)
T PRK00254 293 ALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSN--FGWEDIPVLEIQQMMGRA 370 (720)
T ss_pred HHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCC--CCceeCCHHHHHHhhhcc
Confidence 999999999999999999999999999999999999999999999999999999998862 357789999999999999
Q ss_pred CCCCCCCccEEEEEcCCCc-HHHHHHhh-cCCCcccchhh--HhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcC
Q 000114 872 GRPQYDSYGEGIIITGHSE-LRYYLSLM-NQQLPIESQFV--SKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRN 947 (2158)
Q Consensus 872 GR~g~d~~G~~iil~~~~~-~~~y~~ll-~~~~pieS~l~--~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~n 947 (2158)
||+|+|..|.+++++...+ ..+|.+++ ..+.++.|.+. +.|.++++++|+.|++.+.+|+++||+|||+|. +|
T Consensus 371 GR~~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~---~~ 447 (720)
T PRK00254 371 GRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAH---QR 447 (720)
T ss_pred CCCCcCCCceEEEEecCcchHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHH---hh
Confidence 9999999999999998765 35566653 23334444443 356899999999999999999999999999995 46
Q ss_pred CcccCCCccccccchhHHHHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCC---CC
Q 000114 948 PALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKP---TM 1024 (2158)
Q Consensus 948 p~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~---~~ 1024 (2158)
|.+|++ .+++++++..|.+++||+.+. ++.+.+|++|+++|+|||+|.|+..|.+.++. .+
T Consensus 448 ~~~~~~---------------~~~v~~~l~~L~~~~~i~~~~-~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~ 511 (720)
T PRK00254 448 KDLYSL---------------EEKAKEIVYFLLENEFIDIDL-EDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNP 511 (720)
T ss_pred cChHhH---------------HHHHHHHHHHHHHCCCeEEcC-CCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCC
Confidence 766642 246788999999999999864 46799999999999999999999999998876 67
Q ss_pred CHHHHHHHhhCCccCCCCcCChhHHHHHHHH--------hhcCCCCCCCCCCC--hhHHHHHHHHHHHcCCCCC----CC
Q 000114 1025 GDIELCRLFSLSEEFKYVTVRQDEKMELAKL--------LDRVPIPVKESLEE--PSAKINVLLQAYISQLKLE----GL 1090 (2158)
Q Consensus 1025 ~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l--------~~~~~~~~~~~~~~--~~~K~~~llq~~i~~~~~~----~~ 1090 (2158)
+..++|+++|.++||..+++|++|...|..+ ..++|.+....+.. +..|+++|||+||++.+++ .|
T Consensus 512 ~~~~~l~~~~~~~e~~~~~~r~~e~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~~~~~~ 591 (720)
T PRK00254 512 NPLGIFQLIASTPDMTPLNYSRKEMEDLLDEAYEMEDRLYFNIPYWEDYKFQKFLRAFKTAKVLLDWINEVPEGEIVETY 591 (720)
T ss_pred CHHHHHHHhhCCccccccCcchhhHHHHHHHHHhhcccccccCCcchhhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 8899999999999999999999999888843 33334322122233 7899999999999999873 34
Q ss_pred ccc-chHHHHHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHHHhCCC-Cchh
Q 000114 1091 SLT-SDMVFITQSAGRLLRALFEIVLKRGWA-QLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWER 1167 (2158)
Q Consensus 1091 ~l~-~d~~~i~~~a~ri~~a~~ei~~~~~~~-~~~~~~~~l~~~v~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~-~~~~ 1167 (2158)
+.. +|+..++++|.||++|+++|+...||. .....+.+|++||.||+|.+++||.|+||+|++++++|.++|+ ++++
T Consensus 592 ~~~~gd~~~~~~~~~~l~~a~~~i~~~~~~~~~~~~~l~~l~~rl~~g~~~~~~~L~~ipgig~~~~~~l~~~g~~s~~~ 671 (720)
T PRK00254 592 NIDPGDLYRILELADWLMYSLIELYKLFEPKQEVLDYLETLHLRVKHGVREELLELMRLPMIGRKRARALYNAGFRSIED 671 (720)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHHcCCCHHHhhhhcCCCCCHHHHHHHHHccCCCHHH
Confidence 444 899999999999999999999977763 3333445899999999999999999999999999999999998 7888
Q ss_pred hccCChHHhhhhhcC-chhHHHHHHHHhc
Q 000114 1168 YYDLSPQELGELIRF-PKMGRTLHKFVHQ 1195 (2158)
Q Consensus 1168 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~~ 1195 (2158)
+..+++++|..+.+. ++.++.|++.++.
T Consensus 672 i~~a~~~el~~~~gi~~~~a~~i~~~~~~ 700 (720)
T PRK00254 672 IVNAKPSELLKVEGIGAKIVEGIFKHLGV 700 (720)
T ss_pred HHhCCHHHHhcCCCCCHHHHHHHHHHhcc
Confidence 888899999988443 5778888888773
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-82 Score=853.75 Aligned_cols=641 Identities=25% Similarity=0.339 Sum_probs=535.0
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
|++...+.+.. +|. ++|+|.+|++.+.. ++|++++||||||||++|++++++.+.. ++ ++||++|+++||.|
T Consensus 8 l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~-~~nvlv~apTGSGKTl~a~lail~~l~~---~~--k~v~i~P~raLa~q 80 (674)
T PRK01172 8 YDDEFLNLFTGNDFE-LYDHQRMAIEQLRK-GENVIVSVPTAAGKTLIAYSAIYETFLA---GL--KSIYIVPLRSLAME 80 (674)
T ss_pred CCHHHHHHHhhCCCC-CCHHHHHHHHHHhc-CCcEEEECCCCchHHHHHHHHHHHHHHh---CC--cEEEEechHHHHHH
Confidence 33333333333 465 99999999999854 6789999999999999999999998865 44 89999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCCChH
Q 000114 1406 RYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVL 1484 (2158)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g~~~ 1484 (2158)
++++|++ +.. .|.+|..++|+...+...+..++|+|+|||+|+.++++|. ..+++++++|+||+|++++ .+|+.+
T Consensus 81 ~~~~~~~-l~~-~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~--~~l~~v~lvViDEaH~l~d~~rg~~l 156 (674)
T PRK01172 81 KYEELSR-LRS-LGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDP--YIINDVGLIVADEIHIIGDEDRGPTL 156 (674)
T ss_pred HHHHHHH-Hhh-cCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCCh--hHHhhcCEEEEecchhccCCCccHHH
Confidence 9999984 544 4889999999887766666788999999999999998864 4589999999999999986 579999
Q ss_pred HHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHH
Q 000114 1485 EVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTF 1564 (2158)
Q Consensus 1485 e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~ 1564 (2158)
+.++++++++ +.+.|+|++|||++|..++++|+++.. +.+..||+|+...+........... ........
T Consensus 157 e~ll~~~~~~----~~~~riI~lSATl~n~~~la~wl~~~~-----~~~~~r~vpl~~~i~~~~~~~~~~~-~~~~~~~~ 226 (674)
T PRK01172 157 ETVLSSARYV----NPDARILALSATVSNANELAQWLNASL-----IKSNFRPVPLKLGILYRKRLILDGY-ERSQVDIN 226 (674)
T ss_pred HHHHHHHHhc----CcCCcEEEEeCccCCHHHHHHHhCCCc-----cCCCCCCCCeEEEEEecCeeeeccc-ccccccHH
Confidence 9999988866 457999999999999999999998764 6678899998876543321111000 00011123
Q ss_pred HHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCC
Q 000114 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLN 1644 (2158)
Q Consensus 1565 ~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~ 1644 (2158)
..+......++++||||+|+++|+.+|..|...+..... +.... + .....+..+++++.+||++|||||+
T Consensus 227 ~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~----~~~~~-~-----~~~~~~~~L~~~l~~gv~~~hagl~ 296 (674)
T PRK01172 227 SLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFND----FKVSS-E-----NNNVYDDSLNEMLPHGVAFHHAGLS 296 (674)
T ss_pred HHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhccc----ccccc-c-----ccccccHHHHHHHhcCEEEecCCCC
Confidence 334444467889999999999999999999775432211 10000 0 1223456788899999999999999
Q ss_pred HHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEE
Q 000114 1645 KTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVIL 1724 (2158)
Q Consensus 1645 ~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil 1724 (2158)
.++|..+++.|++|.++|||||++++||+|+|++.|||+++++|++.. ..++|..+|.||+|||||+|+|..|.++++
T Consensus 297 ~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~--~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~ 374 (674)
T PRK01172 297 NEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGG--IRYLSNMEIKQMIGRAGRPGYDQYGIGYIY 374 (674)
T ss_pred HHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEcCceEeCCCC--ceeCCHHHHHHHhhcCCCCCCCCcceEEEE
Confidence 999999999999999999999999999999999999999999998753 357899999999999999999999999999
Q ss_pred ecCCh-HHHHHHHh-hCCCccccchhhHHHHH--HHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccH
Q 000114 1725 CHAPR-KEYYKKFL-YDAFPVESHLHHFLHDN--FNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHL 1800 (2158)
Q Consensus 1725 ~~~~~-~~~~~k~l-~~~~piES~L~~~l~d~--l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~ 1800 (2158)
+...+ .+++++|+ .++.|+||+|.....++ ++++|+.|++.+++|+++|++|||||++ |+
T Consensus 375 ~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~---~~------------- 438 (674)
T PRK01172 375 AASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQ---NG------------- 438 (674)
T ss_pred ecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhc---Cc-------------
Confidence 88765 67899998 69999999997655454 4599999999999999999999999983 32
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHhcCccccCCCCC
Q 000114 1801 SDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIR 1880 (2158)
Q Consensus 1801 ~~~l~~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR 1880 (2158)
+++++++|+++++.|.++|||+. ++.+.||++|+++|+||++|.|+..|..+++..++..++|++||.|+|| +|+|
T Consensus 439 ~~~l~~~v~~~l~~L~~~~~i~~--~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~~~~~~~e~--~~~~ 514 (674)
T PRK01172 439 VDEIDYYIESSLKFLKENGFIKG--DVTLRATRLGKLTSDLYIDPESALILKSAFDHDYDEDLALYYISLCREI--IPAN 514 (674)
T ss_pred hHHHHHHHHHHHHHHHHCCCccc--CCcEeECHHHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHHHhhcCccc--cccc
Confidence 35789999999999999999963 3469999999999999999999999999999999999999999999999 8999
Q ss_pred cchHHHHHHHhhcCccccCCCCCCChHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 000114 1881 PGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALL 1960 (2158)
Q Consensus 1881 ~~E~~~l~~L~~~~p~~~~~~~~~~~~~K~~lLLqAhlsR~~lp~~l~~D~~~Il~~~~rLl~a~vdi~~~~g~l~~~l~ 1960 (2158)
++|+..+.++...+|. .....|+.|+++|||||++|.+++. +..++..++.+++++ +.+.+|+..++.
T Consensus 515 ~~~~~~~~~~~~~~~~----~~~~~~~~k~~~ll~~~~~~~~~~~-----i~~~~~~~~g~l~~~---~~~~~~~~~a~~ 582 (674)
T PRK01172 515 TRDDYYAMEFLEDIGV----IDGDISAAKTAMVLRGWISEASMQK-----ITDTYGIAPGDVQAR---ASSADWISYSLA 582 (674)
T ss_pred cchHHHHHHHHHHhcc----ccchhHHHHHHHHHHHHHcCCCHHH-----HHHHhCCChHHHHHH---HHHHHHHHHHHH
Confidence 9999888888877764 1345689999999999999999864 555667777777777 366677766666
Q ss_pred H------HHHHHH-------HHhccCCCCCccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHH
Q 000114 1961 A------MEVSQM-------VTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLL 2027 (2158)
Q Consensus 1961 ~------m~L~q~-------i~Q~~w~~~s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~ 2027 (2158)
. |+++|| |+||+|++++||+|||||++.++++|.++| ++|++||+++++++|.+++++++.+.+
T Consensus 583 ~~~~~~~~~~~~~l~~~~~rl~~gv~~~~~~L~~ip~~~~~~a~~l~~~g---~~~~~di~~~~~~~~~~i~~~~~~~~~ 659 (674)
T PRK01172 583 RLSSIYKPEMRRKLEILNIRIKEGIREDLIDLVLIPKVGRVRARRLYDAG---FKTVDDIARSSPERIKKIYGFSDTLAN 659 (674)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHcCCCHHHHhhcCCCCCCHHHHHHHHHcC---CCCHHHHHhCCHHHHHHHhccCHHHHH
Confidence 6 788888 999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHcc
Q 000114 2028 DIARFCNR 2035 (2158)
Q Consensus 2028 ~v~~~~~~ 2035 (2158)
+|.+.++.
T Consensus 660 ~i~~~~~~ 667 (674)
T PRK01172 660 AIVNRAMK 667 (674)
T ss_pred HHHHHHHH
Confidence 99888764
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-84 Score=851.14 Aligned_cols=738 Identities=35% Similarity=0.479 Sum_probs=621.1
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
+++.+...+ .++.++++.|+.++...+.+++|+|||||||||||++|+++|++.+.++ +.|+|||||+
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~----------~~k~vYivPl 85 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG----------GGKVVYIVPL 85 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc----------CCcEEEEeCh
Confidence 455556666 4566677766667666666689999999999999999999999999874 3489999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccC-
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN- 638 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~- 638 (2158)
||||.|++++|+ ++..+|++|+..|||.+.....+.+++|+|+||||||+++|+... ++..|++|||||+|+++|.
T Consensus 86 kALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~--~~~~V~lvViDEiH~l~d~~ 162 (766)
T COG1204 86 KALAEEKYEEFS-RLEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS--WIEEVDLVVIDEIHLLGDRT 162 (766)
T ss_pred HHHHHHHHHHhh-hHHhcCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcc--hhhcccEEEEeeeeecCCcc
Confidence 999999999999 788899999999999999998999999999999999999999874 8999999999999999996
Q ss_pred ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHH
Q 000114 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQL 718 (2158)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~ 718 (2158)
||+++|.|++|+++. ...+||||||||+||+++++.|+++++....+.+.+.+|+++..+.+.+...... ..-..
T Consensus 163 RG~~lE~iv~r~~~~----~~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k-~~~~~ 237 (766)
T COG1204 163 RGPVLESIVARMRRL----NELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKK-TWPLL 237 (766)
T ss_pred cCceehhHHHHHHhh----CcceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccc-ccccc
Confidence 999999999999653 4459999999999999999999999987788999999999999999888776544 22223
Q ss_pred hhHHHHHHHHHHhC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCe
Q 000114 719 MNDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797 (2158)
Q Consensus 719 l~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv 797 (2158)
....++..+.+... ++|+|||||||+.|..+|+.+............+...+....++...+.....+..|+++++.|+
T Consensus 238 ~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gv 317 (766)
T COG1204 238 IDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGV 317 (766)
T ss_pred chHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCc
Confidence 34455666666555 78999999999999999999996433222111111111222222223344455689999999999
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCC
Q 000114 798 AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (2158)
Q Consensus 798 ~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d 877 (2158)
++|||||++++|..+++.|++|.++|||||+|||||||+|+.+|||+++..|++. +++.++++.|++||+|||||||+|
T Consensus 318 afHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~-~g~~~i~~~dv~QM~GRAGRPg~d 396 (766)
T COG1204 318 AFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPK-GGIVDIPVLDVLQMAGRAGRPGYD 396 (766)
T ss_pred cccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCC-CCeEECchhhHhhccCcCCCCCcC
Confidence 9999999999999999999999999999999999999999999999999999994 459999999999999999999999
Q ss_pred CccEEEEEc-CCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCcc
Q 000114 878 SYGEGIIIT-GHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPE 956 (2158)
Q Consensus 878 ~~G~~iil~-~~~~~~~y~~ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~ 956 (2158)
..|.+++++ +..+..++.+...++.|.+ +.+.|.+..|++..++++.+..++++|+.+||+|.|++.+|..|+...
T Consensus 397 ~~G~~~i~~~~~~~~~~~~~~~~~~~~e~--~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~- 473 (766)
T COG1204 397 DYGEAIILATSHDELEYLAELYIQSEPEP--IESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGM- 473 (766)
T ss_pred CCCcEEEEecCccchhHHHHHhhccCcch--HHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccc-
Confidence 999999999 5566667777666666654 666677777999999999999999999999999999999999987622
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCC---CHHHHHHHh
Q 000114 957 VLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTM---GDIELCRLF 1033 (2158)
Q Consensus 957 ~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~---~~~~~l~~~ 1033 (2158)
....+..++..|.+++++ .+.....+.+|++|+.+|+|||++.|+..|.+.+.... +..+++.++
T Consensus 474 -----------~~~~i~~~~~~L~~~~~~-~~~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~i 541 (766)
T COG1204 474 -----------LREEILASLRYLEENGLI-LDADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLI 541 (766)
T ss_pred -----------hHHHHHHHHHHHHhccce-eeccccccchhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhh
Confidence 124678889999998722 33446789999999999999999999999999776554 889999999
Q ss_pred hCCccCCCCcCChhHHHHH--HHHhhcCCCCCCCCCCChhHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHHHHHH
Q 000114 1034 SLSEEFKYVTVRQDEKMEL--AKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALF 1111 (2158)
Q Consensus 1034 s~~~ef~~i~~r~~e~~~l--~~l~~~~~~~~~~~~~~~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~ri~~a~~ 1111 (2158)
|.++||..+++|.++..++ ..+.+..++...+...++..|.+.++|++.+...+.+|....|..+|.++.++...+++
T Consensus 542 s~~pd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~wi~~~~~~~i~~~~~~~~~dl~ 621 (766)
T COG1204 542 SLTPDLMPIKLRERESSELVLDELEEQSDYLLGERLDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPGDLL 621 (766)
T ss_pred hcCccchhhhhhhhhhhhhhHHHHHhcchHHhhccccccchhhHHHHHHHHHHHHHHHHHHhCcHHHHHHHhCcchhhHH
Confidence 9999999999999999886 45556677777776778889999999999999999989999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHHHhCCCCchhhccCCh-HHhhhhhcCchhHHHHH
Q 000114 1112 EIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSP-QELGELIRFPKMGRTLH 1190 (2158)
Q Consensus 1112 ei~~~~~~~~~~~~~~~l~~~v~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~ 1190 (2158)
.++....|. .+. ++.|++++.++.|....++.|+ .++..+..+++ .|..-+++.++.. ..++. ++..+.....+
T Consensus 622 ~~~~~a~w~-~~~-~~~l~~~~~r~~~~~~~~~~~~-~~~~~~~~rie-~gv~~e~~~~l~~i~~~gr-vrar~ly~~g~ 696 (766)
T COG1204 622 RIAETAEWL-SAD-LLALGKAAERLAKILGLGLHVL-RKLEILSLRIE-YGVRSEELLELVEIRGVGR-VRARKLYNAGY 696 (766)
T ss_pred hhcchhhhh-hhh-hhhhhhhhhhhHhhhCCCcccc-ccchhhhhhhh-cCCChhhhcccccccccch-hHHHHHHHhhh
Confidence 999999999 555 9999999999999999999999 77777777775 4443256666643 33343 66677888888
Q ss_pred HHHhcCCcceEEEEEeeccCceEEEEEEEecCCcccCCCCCCcccEEEEEEeCCCCeEeeeehhhhhc
Q 000114 1191 KFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKK 1258 (2158)
Q Consensus 1191 ~~~~~~P~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~i~~~~~~~l~~ 1258 (2158)
+.++.+|.....+.+.|+++...++.-.|.+.+.|....|+..+.||..+.+.++..++|.+.+.+..
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (766)
T COG1204 697 KSLEDLRLIADPAELLPLTGIGERLVEAILESLGRDVLLSGRAYFFSIEVRELDLLYVLHEEALILAG 764 (766)
T ss_pred ccHHHHHhhcChhhhhhhhhhHHHHHHHHHHHhhhhhhcccchhhhcccCccccccceecchhhccCC
Confidence 88899998888888888888777777788899999999999999999999999999999998877643
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-78 Score=816.64 Aligned_cols=643 Identities=24% Similarity=0.347 Sum_probs=530.4
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
||+.+.+.+ .+|+ |+++|.++++.+ .+++|++++||||||||++|++++++.+..+ .++||++|+
T Consensus 8 l~~~~~~~~~~~~~~-l~~~Q~~ai~~l-~~~~nvlv~apTGSGKTl~a~lail~~l~~~-----------~k~v~i~P~ 74 (674)
T PRK01172 8 YDDEFLNLFTGNDFE-LYDHQRMAIEQL-RKGENVIVSVPTAAGKTLIAYSAIYETFLAG-----------LKSIYIVPL 74 (674)
T ss_pred CCHHHHHHHhhCCCC-CCHHHHHHHHHH-hcCCcEEEECCCCchHHHHHHHHHHHHHHhC-----------CcEEEEech
Confidence 677777777 4565 999999999986 5557899999999999999999999987642 379999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-C
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~ 638 (2158)
++||.|+++.|++ +...|++|..++|+..........++|+|+|||+|+.+.+++. .+++++++|||||+|++++ .
T Consensus 75 raLa~q~~~~~~~-l~~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~--~~l~~v~lvViDEaH~l~d~~ 151 (674)
T PRK01172 75 RSLAMEKYEELSR-LRSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDP--YIINDVGLIVADEIHIIGDED 151 (674)
T ss_pred HHHHHHHHHHHHH-HhhcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCCh--hHHhhcCEEEEecchhccCCC
Confidence 9999999999987 4457899999999987766666788999999999999988764 5688999999999999987 7
Q ss_pred ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCC--hhHHH
Q 000114 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK--PLQRF 716 (2158)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~--~~~~~ 716 (2158)
||+.++.++.++.. ..+++|+|++|||++|..+++.|++... +...+||+|+...+....... ...+.
T Consensus 152 rg~~le~ll~~~~~----~~~~~riI~lSATl~n~~~la~wl~~~~------~~~~~r~vpl~~~i~~~~~~~~~~~~~~ 221 (674)
T PRK01172 152 RGPTLETVLSSARY----VNPDARILALSATVSNANELAQWLNASL------IKSNFRPVPLKLGILYRKRLILDGYERS 221 (674)
T ss_pred ccHHHHHHHHHHHh----cCcCCcEEEEeCccCCHHHHHHHhCCCc------cCCCCCCCCeEEEEEecCeeeecccccc
Confidence 99999999887643 3567999999999999999999998642 567889999876543221100 00000
Q ss_pred HHhhHHHHHHHHHH-hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccC
Q 000114 717 QLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPY 795 (2158)
Q Consensus 717 ~~l~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~ 795 (2158)
.. .+...+.+. ..++++||||+||+.|+.+|..|.......... . +........+..|+++++.
T Consensus 222 ~~---~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~---~---------~~~~~~~~~~~~L~~~l~~ 286 (674)
T PRK01172 222 QV---DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDF---K---------VSSENNNVYDDSLNEMLPH 286 (674)
T ss_pred cc---cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccc---c---------ccccccccccHHHHHHHhc
Confidence 00 011222222 347899999999999999999998764322111 0 0001123346778999999
Q ss_pred CeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCC
Q 000114 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875 (2158)
Q Consensus 796 gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g 875 (2158)
||++|||||++++|..+++.|++|.++|||||++++||||+|++.|||.++..|+.. ...++|+.+|.||+|||||+|
T Consensus 287 gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~--~~~~~s~~~~~Qm~GRAGR~g 364 (674)
T PRK01172 287 GVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNG--GIRYLSNMEIKQMIGRAGRPG 364 (674)
T ss_pred CEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEcCceEeCCC--CceeCCHHHHHHHhhcCCCCC
Confidence 999999999999999999999999999999999999999999999999988777653 346799999999999999999
Q ss_pred CCCccEEEEEcCCCc-HHHHHHhh-cCCCcccchhhHhh--HHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCccc
Q 000114 876 YDSYGEGIIITGHSE-LRYYLSLM-NQQLPIESQFVSKL--ADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALY 951 (2158)
Q Consensus 876 ~d~~G~~iil~~~~~-~~~y~~ll-~~~~pieS~l~~~l--~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y 951 (2158)
+|..|.+++++...+ .++|.+++ +.+.|+||++.... ..+++++|+.|.+.+.+|+++|++|||+|++ |+
T Consensus 365 ~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~---~~--- 438 (674)
T PRK01172 365 YDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQ---NG--- 438 (674)
T ss_pred CCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhc---Cc---
Confidence 999999999987654 67788877 78999999998654 4455599999999999999999999999973 21
Q ss_pred CCCccccccchhHHHHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHH
Q 000114 952 GLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCR 1031 (2158)
Q Consensus 952 ~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~ 1031 (2158)
.+++.++|++|++.|.++|||+.+ +.+.+|++|++||+|||+|.|+..|.+.++..++..++|.
T Consensus 439 -------------~~~l~~~v~~~l~~L~~~~~i~~~---~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~ 502 (674)
T PRK01172 439 -------------VDEIDYYIESSLKFLKENGFIKGD---VTLRATRLGKLTSDLYIDPESALILKSAFDHDYDEDLALY 502 (674)
T ss_pred -------------hHHHHHHHHHHHHHHHHCCCcccC---CcEeECHHHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHH
Confidence 124567899999999999999743 5699999999999999999999999999999999999999
Q ss_pred HhhCCccCCCCcCChhHHHHHHHHhhcCCCCCCCCCCChhHHHHHHHHHHHcCCCC----CCCccc-chHHHHHHHHHHH
Q 000114 1032 LFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKL----EGLSLT-SDMVFITQSAGRL 1106 (2158)
Q Consensus 1032 ~~s~~~ef~~i~~r~~e~~~l~~l~~~~~~~~~~~~~~~~~K~~~llq~~i~~~~~----~~~~l~-~d~~~i~~~a~ri 1106 (2158)
++|.++|| +|+|..|...+.++.++++.. ....++.|+++|||+||+|.++ +.|... +|+..++++++|+
T Consensus 503 ~~~~~~e~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~k~~~ll~~~~~~~~~~~i~~~~~~~~g~l~~~~~~~~~~ 577 (674)
T PRK01172 503 YISLCREI--IPANTRDDYYAMEFLEDIGVI---DGDISAAKTAMVLRGWISEASMQKITDTYGIAPGDVQARASSADWI 577 (674)
T ss_pred HhhcCccc--cccccchHHHHHHHHHHhccc---cchhHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 99999999 888888888888888877641 2346889999999999999997 345555 7999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHHHhCCC-CchhhccCChHHhhhhhcCc-h
Q 000114 1107 LRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRFP-K 1184 (2158)
Q Consensus 1107 ~~a~~ei~~~~~~~~~~~~~~~l~~~v~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~ 1184 (2158)
.+|+..++.. +|..++..+-.|.++|.+|+|++.+||.|+|||+++++++|+++|+ ++.++.+++++++.+++++. +
T Consensus 578 ~~a~~~~~~~-~~~~~~~~l~~~~~rl~~gv~~~~~~L~~ip~~~~~~a~~l~~~g~~~~~di~~~~~~~~~~i~~~~~~ 656 (674)
T PRK01172 578 SYSLARLSSI-YKPEMRRKLEILNIRIKEGIREDLIDLVLIPKVGRVRARRLYDAGFKTVDDIARSSPERIKKIYGFSDT 656 (674)
T ss_pred HHHHHHHHHH-hhHHHHHHHHHHHHHHHcCCCHHHHhhcCCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHhccCHH
Confidence 9999999876 5566777777888889999999999999999999999999999998 78888888999999998753 4
Q ss_pred hHHHHHHHHhc
Q 000114 1185 MGRTLHKFVHQ 1195 (2158)
Q Consensus 1185 ~~~~i~~~~~~ 1195 (2158)
..+.|.+.++.
T Consensus 657 ~~~~i~~~~~~ 667 (674)
T PRK01172 657 LANAIVNRAMK 667 (674)
T ss_pred HHHHHHHHHHH
Confidence 55666655543
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-68 Score=697.32 Aligned_cols=648 Identities=28% Similarity=0.381 Sum_probs=502.7
Q ss_pred hHHHHHhc--CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH
Q 000114 1330 PLYEALYQ--GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2158)
Q Consensus 1330 ~~~~~l~~--gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~ 1407 (2158)
+.+..++. ++.+++|.|+.++...+.+++|+|||||||||||++|+++|++.+.+. ++ ++|||||+++||.|++
T Consensus 18 ~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~--k~vYivPlkALa~Ek~ 93 (766)
T COG1204 18 DRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--GG--KVVYIVPLKALAEEKY 93 (766)
T ss_pred HHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CC--cEEEEeChHHHHHHHH
Confidence 34555665 365666666666666555589999999999999999999999999873 34 9999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC-CCChHHH
Q 000114 1408 RDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEV 1486 (2158)
Q Consensus 1408 ~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~-~g~~~e~ 1486 (2158)
++|+ +|... |++|+..|||.....+.+..++|||+|||+|++++|++.. ++..|++|||||+|++++. ||+++|.
T Consensus 94 ~~~~-~~~~~-GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~--~~~~V~lvViDEiH~l~d~~RG~~lE~ 169 (766)
T COG1204 94 EEFS-RLEEL-GIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS--WIEEVDLVVIDEIHLLGDRTRGPVLES 169 (766)
T ss_pred HHhh-hHHhc-CCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcc--hhhcccEEEEeeeeecCCcccCceehh
Confidence 9999 67654 9999999999998888899999999999999999998654 7899999999999999997 9999999
Q ss_pred HHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCC-ceEecCCCCcccccEEEEecccccchHHHHHhcChHHHH
Q 000114 1487 IVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSH-GLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFT 1565 (2158)
Q Consensus 1487 ~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~-~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~ 1565 (2158)
+++|++.. ...+|||+||||++|+.++|+|+++... ..+.+.+..|+++....+.+...... ..........+.
T Consensus 170 iv~r~~~~----~~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k-~~~~~~~~~~~~ 244 (766)
T COG1204 170 IVARMRRL----NELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKK-TWPLLIDNLALE 244 (766)
T ss_pred HHHHHHhh----CcceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccc-cccccchHHHHH
Confidence 99999987 3458999999999999999999999864 46777788888888887776654333 112223345566
Q ss_pred HHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCccccc-ccCCCcccch-hhHhhhhHHHHHHHhcccEEEecCCC
Q 000114 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSA-FLLWPAEEVE-PFIDNIQEEMLKATLRHGVGYLHEGL 1643 (2158)
Q Consensus 1566 ~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~-~l~~~~~~l~-~~~~~i~d~~L~~~l~~gv~~~H~~l 1643 (2158)
.+...+..++++||||+||+.+..+|..+..+.......... ........+. .......+..|.+++..|+++||+||
T Consensus 245 ~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL 324 (766)
T COG1204 245 LVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGL 324 (766)
T ss_pred HHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCC
Confidence 667777899999999999999999999998644332211110 0001111111 12223345789999999999999999
Q ss_pred CHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEE
Q 000114 1644 NKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2158)
Q Consensus 1644 ~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~ii 1723 (2158)
+.++|..+++.|+.|+++|||||++++||||+|+.+|||+||+.|++. ....++++.+++||+|||||||+|..|.+++
T Consensus 325 ~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~-~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i 403 (766)
T COG1204 325 PREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPK-GGIVDIPVLDVLQMAGRAGRPGYDDYGEAII 403 (766)
T ss_pred CHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCC-CCeEECchhhHhhccCcCCCCCcCCCCcEEE
Confidence 999999999999999999999999999999999999999999999984 4488999999999999999999999999999
Q ss_pred EecCChHHHHHHHhh---CCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccH
Q 000114 1724 LCHAPRKEYYKKFLY---DAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHL 1800 (2158)
Q Consensus 1724 l~~~~~~~~~~k~l~---~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~ 1800 (2158)
++...+...|..-.+ .+.|++|.| .+..+.+...+++.+..++++|+..+|||+|+..||.+|+.
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~e~~~s~l----~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~-------- 471 (766)
T COG1204 404 LATSHDELEYLAELYIQSEPEPIESKL----GDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGE-------- 471 (766)
T ss_pred EecCccchhHHHHHhhccCcchHHHhh----cccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccc--------
Confidence 996655444433333 455544444 33338899999999999999999999999999999999876
Q ss_pred HHHHHHHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCCC---CHHHHHHHHhcCccccCC
Q 000114 1801 SDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKT---RMKGLLEVLASASEYAQL 1877 (2158)
Q Consensus 1801 ~~~l~~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~---~~~~lL~ils~a~Ef~~i 1877 (2158)
....+.+..++..|.+.+.+...+...+.+|.+|..+|+|||++.|+..|...+.... +..++++.++.++||..+
T Consensus 472 -~~~~~~i~~~~~~L~~~~~~~~~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~is~~pd~~~~ 550 (766)
T COG1204 472 -GMLREEILASLRYLEENGLILDADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDLMPI 550 (766)
T ss_pred -cchHHHHHHHHHHHHhccceeeccccccchhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhhhcCccchhh
Confidence 3456788899999999974444455679999999999999999999999998776654 688999999999999999
Q ss_pred CCCcchHHHH--HHHhhcCccccCCCCCCCh---------HHHHHHHHHHHhcCCCCC------CCchhhHHHHHHHHHH
Q 000114 1878 PIRPGEEEVV--RRLIHHQRFSFENPKFTDP---------HVKANALLQAHFSRQQVG------GNLKLDQEEVLLSASR 1940 (2158)
Q Consensus 1878 ~vR~~E~~~l--~~L~~~~p~~~~~~~~~~~---------~~K~~lLLqAhlsR~~lp------~~l~~D~~~Il~~~~r 1940 (2158)
++|..+...+ ..+....++..... ...+ ..|....+-+|++..+.. .....|...+...+.|
T Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~l~~~~~~~~l~~wi~~~~~~~i~~~~~~~~~dl~~~~~~a~w 629 (766)
T COG1204 551 KLRERESSELVLDELEEQSDYLLGER-LDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPGDLLRIAETAEW 629 (766)
T ss_pred hhhhhhhhhhhHHHHHhcchHHhhcc-ccccchhhHHHHHHHHHHHHHHHHHHhCcHHHHHHHhCcchhhHHhhcchhhh
Confidence 9998877664 44445555433211 1112 344555555555544321 1235677777777777
Q ss_pred H-------HHHHHHHHHhcCCHHHH-HHHHHHHHHHHhccC-CCCCccccCCCCCHHHHHHHHhCCCCCccCHHHHh
Q 000114 1941 L-------LQAMVDVISSNGWLSLA-LLAMEVSQMVTQGMW-ERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLV 2008 (2158)
Q Consensus 1941 L-------l~a~vdi~~~~g~l~~~-l~~m~L~q~i~Q~~w-~~~s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~ 2008 (2158)
+ ..++-..+...+...-- ...=.+...+.-|+- +...+|..++|++...++++.+.+ ..++.++.
T Consensus 630 ~~~~~~~l~~~~~r~~~~~~~~~~~~~~~~~~~~rie~gv~~e~~~~l~~i~~~grvrar~ly~~g---~~~~~~~~ 703 (766)
T COG1204 630 LSADLLALGKAAERLAKILGLGLHVLRKLEILSLRIEYGVRSEELLELVEIRGVGRVRARKLYNAG---YKSLEDLR 703 (766)
T ss_pred hhhhhhhhhhhhhhhHhhhCCCccccccchhhhhhhhcCCChhhhcccccccccchhHHHHHHHhh---hccHHHHH
Confidence 7 55555555544422100 122245666777777 667788899999998999999988 88888887
|
|
| >smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-51 Score=504.95 Aligned_cols=307 Identities=45% Similarity=0.753 Sum_probs=288.6
Q ss_pred ccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHhcCccccCCCCCcchHHHHHHHhhcCccccCCCCCCChHH
Q 000114 1829 LSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHV 1908 (2158)
Q Consensus 1829 ~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~~~ 1908 (2158)
+.||++|+|||+|||++.|++.|...+++.++..++|++||.|.||.++|+|++|+..+++|.+.+|++++...++.|+.
T Consensus 2 ~~~T~~Grias~yYI~~~T~~~f~~~l~~~~~~~~lL~~ls~a~Ef~~i~vR~~E~~~l~~l~~~~~~~~~~~~~~~~~~ 81 (312)
T smart00611 2 IWPTDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLLEELAEKLPIRLENPSLDDPHV 81 (312)
T ss_pred cccchhHHHHhhhccChHHHHHHHHhcCCCCCHHHHHHHHhCcHhhCCCCCCccHHHHHHHHHHhCCcCcCCCCCCCchH
Confidence 57999999999999999999999999999999999999999999999999999999999999999998876566788999
Q ss_pred HHHHHHHHHhcCCCCC-CCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCH
Q 000114 1909 KANALLQAHFSRQQVG-GNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMK 1987 (2158)
Q Consensus 1909 K~~lLLqAhlsR~~lp-~~l~~D~~~Il~~~~rLl~a~vdi~~~~g~l~~~l~~m~L~q~i~Q~~w~~~s~L~QLP~~~~ 1987 (2158)
|+++||||||+|.++| .+|.+|+++|+++++||++||+||+..+||+.+++++|+|+|||+||+|++++||+|||||++
T Consensus 82 K~~lLLqa~i~r~~l~~~~l~~D~~~vl~~a~rll~al~di~~~~~~~~~~~~~l~L~q~i~q~~w~~~~~L~Qlp~i~~ 161 (312)
T smart00611 82 KANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMVDIALERGWLSTALNALNLSQMIIQALWPTDSPLLQLPHLPE 161 (312)
T ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhCCCCCccccCCCCCH
Confidence 9999999999999997 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHccCCceEEEEEEeccccccCCCeEEEEEEEEEcC
Q 000114 1988 DLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDL 2067 (2158)
Q Consensus 1988 ~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~~P~i~v~~~v~~~~~v~~g~~~~l~v~l~r~~ 2067 (2158)
+.++++.++| +.++.+|.+++++++..++++++.++++|.++|++||+++|++++.+...+..+..++++++++++.
T Consensus 162 ~~~~~l~~~~---i~s~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~l~v~~~~~~~~~~~~~~~~~i~~~~~~~~ 238 (312)
T smart00611 162 EILKRLEKKK---VLSLEDLLELEDEERGELLGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVLGVEVTLTVDLTWDD 238 (312)
T ss_pred HHHHHHHhCC---CCCHHHHHhcCHHHHHHHHcCCHHHHHHHHHHHHhCCcceeEEEEcCCcccccCceEEEEEEEEEcc
Confidence 9999999988 9999999999999999999999999999999999999999999998876677889999999999842
Q ss_pred CCCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeecccce---EEEEEEEecCCCCceEEEEEEEeCCccccCc
Q 000114 2068 EGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKS---RVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQ 2144 (2158)
Q Consensus 2068 ~~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~~~~~---~~~l~f~~P~~~G~~~~~l~~~sDsY~G~D~ 2144 (2158)
.+| .|.|+||++|||.++|+|++++++++.+.. +++++|.+|..+|.|+|++++|||||+|||+
T Consensus 239 -------~~~------~k~e~~~l~v~d~~~~~il~~~~~~~~~~~~~~~~~l~f~~P~~~~~~~~~v~v~SD~y~g~d~ 305 (312)
T smart00611 239 -------EIH------GKQEGWWLVIGDSDGNELLHIERFSLNKKNVSEEVKLDFTAPATEGNYQYTLRLVSDSYLGCDQ 305 (312)
T ss_pred -------ccc------CCcccEEEEEEeCCCCEEEEEEEEEEEeecCCCcEEEEEEecCCCCcceEEEEEEecccCCcce
Confidence 122 689999999999999999999999987544 7899999998789999999999999999999
Q ss_pred EEEEEEE
Q 000114 2145 EYAFTVD 2151 (2158)
Q Consensus 2145 ~~~~~l~ 2151 (2158)
+++++|+
T Consensus 306 ~~~i~~~ 312 (312)
T smart00611 306 EYPLSFD 312 (312)
T ss_pred EEEEeeC
Confidence 9999873
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=468.39 Aligned_cols=557 Identities=24% Similarity=0.344 Sum_probs=419.1
Q ss_pred ccCC--CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEE
Q 000114 478 KISE--MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKI 553 (2158)
Q Consensus 478 ~i~~--lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~ki 553 (2158)
++++ +|+.++..+ .|++.|.|+|..++.+.+-.++|++|+++|+||||+++.++-+..+... +.|.
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~----------g~Km 264 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG----------GKKM 264 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC----------CCeE
Confidence 4544 589999998 7999999999999999988889999999999999999999988877653 3489
Q ss_pred EEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccce
Q 000114 554 VYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKL 626 (2158)
Q Consensus 554 l~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~l 626 (2158)
+|++|..|||+|.++.|+++..++|+++..-.|-....... ...++|||+|.|-+|.+.|.. ..+.+++.
T Consensus 265 lfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg---~~lgdiGt 341 (830)
T COG1202 265 LFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG---KDLGDIGT 341 (830)
T ss_pred EEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC---Ccccccce
Confidence 99999999999999999999999999999888865544332 347899999999999999986 46889999
Q ss_pred EEeeccccccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEE
Q 000114 627 LIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705 (2158)
Q Consensus 627 IIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~ 705 (2158)
|||||+|.|.| +||+.+.-++.|+.+ ..+..|+|+||||+.|+++++..|+..+. ....||||+..+.+
T Consensus 342 VVIDEiHtL~deERG~RLdGLI~RLr~----l~~~AQ~i~LSATVgNp~elA~~l~a~lV------~y~~RPVplErHlv 411 (830)
T COG1202 342 VVIDEIHTLEDEERGPRLDGLIGRLRY----LFPGAQFIYLSATVGNPEELAKKLGAKLV------LYDERPVPLERHLV 411 (830)
T ss_pred EEeeeeeeccchhcccchhhHHHHHHH----hCCCCeEEEEEeecCChHHHHHHhCCeeE------eecCCCCChhHeee
Confidence 99999999998 799999999999865 45689999999999999999999997642 33569999999887
Q ss_pred eeccCChhHHHHHhhHHHHHHHHHHhC---CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhh
Q 000114 706 GIQVKKPLQRFQLMNDLCYEKVVAVAG---KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD 782 (2158)
Q Consensus 706 ~~~~~~~~~~~~~l~~~~~~~i~~~~~---~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 782 (2158)
..... ..+...++.++-........ .+|+|||++||+.|..+|..|..+|+..
T Consensus 412 f~~~e--~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a---------------------- 467 (830)
T COG1202 412 FARNE--SEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKA---------------------- 467 (830)
T ss_pred eecCc--hHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCccc----------------------
Confidence 65433 23334444444433333222 6799999999999999999998877554
Q ss_pred ccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHH
Q 000114 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862 (2158)
Q Consensus 783 ~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~ 862 (2158)
+.+||||+..+|+.++..|.++.+.++|+|++|+.|||+|+-.||+..- . -+..++|+.
T Consensus 468 ---------------~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsL-----a-MG~~WLs~~ 526 (830)
T COG1202 468 ---------------APYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESL-----A-MGIEWLSVR 526 (830)
T ss_pred ---------------ccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHH-----H-cccccCCHH
Confidence 3459999999999999999999999999999999999999999877421 1 124689999
Q ss_pred HHHHhhcccCCCCCCCccEEEEEcCCCcH----------HHHHHhh-cCCCcccchhhH-hhHHHHHHHHHhccccChHH
Q 000114 863 DIMQMLGRAGRPQYDSYGEGIIITGHSEL----------RYYLSLM-NQQLPIESQFVS-KLADQLNAEIVLGTVQNAKE 930 (2158)
Q Consensus 863 ~~~Qr~GRAGR~g~d~~G~~iil~~~~~~----------~~y~~ll-~~~~pieS~l~~-~l~d~lnaeI~~~~i~~~~~ 930 (2158)
+|.||.||||||+|...|++|+++.+... +.-.+++ ..+.|+.-.... .-.++..| ..|...+..+
T Consensus 527 EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~~ 604 (830)
T COG1202 527 EFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLSV 604 (830)
T ss_pred HHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHHH
Confidence 99999999999999999999999976432 2223343 345565554443 12233333 2233333322
Q ss_pred HHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCc
Q 000114 931 ACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISH 1010 (2158)
Q Consensus 931 ~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~ 1010 (2158)
+ + .-|+...|... | ...++..|++.|||+.+ ++.+.+|+.|+++|.+++.|
T Consensus 605 i-~-----------~v~~~~~g~~~-----~----------~~k~l~~Lee~g~i~~~--G~~v~~T~yGrava~~Fl~p 655 (830)
T COG1202 605 I-E-----------RVNSLMLGAAF-----D----------PKKALSKLEEYGMIKKK--GNIVRPTPYGRAVAMSFLGP 655 (830)
T ss_pred H-h-----------hcChhhccccC-----C----------HHHHHHHHHhcCCeecc--CCEeeeccccceeEEeecCc
Confidence 1 1 11222222211 1 14578899999999854 35699999999999999999
Q ss_pred ccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhh-cCCCCCCC--------C---CC--Ch--hHHH
Q 000114 1011 GTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLD-RVPIPVKE--------S---LE--EP--SAKI 1074 (2158)
Q Consensus 1011 ~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l~~-~~~~~~~~--------~---~~--~~--~~K~ 1074 (2158)
.++..+.+.+-..+ +.|+++..-.=|++..+...=+.++.+.+. ++|..+-. . +- +| ..|.
T Consensus 656 ~~a~~Ir~~v~~~~---~pl~i~~~l~pfE~ayls~~l~r~i~~~~~~~vpsr~f~~a~~~I~~e~d~ii~ld~k~~e~l 732 (830)
T COG1202 656 SEAEFIREGVLASM---DPLRIAAELEPFENAYLSGFLKRAIESALRGRVPSRLFDSALLDILEEGDKIIELDPKLKEKL 732 (830)
T ss_pred hHHHHHHHhhhccC---ChHhHhhccccccccccChHHHHHHHHHhcCCCchhhhhHHHHHHHhchhhhhcCCHHHHHHH
Confidence 99998888754443 456677777778777777666666655442 23321111 0 00 22 3456
Q ss_pred HHHHHHHHcC-------------------CCCC-------------CCccc---chHHHHHHHHHHHHHHHHHHHHHcCC
Q 000114 1075 NVLLQAYISQ-------------------LKLE-------------GLSLT---SDMVFITQSAGRLLRALFEIVLKRGW 1119 (2158)
Q Consensus 1075 ~~llq~~i~~-------------------~~~~-------------~~~l~---~d~~~i~~~a~ri~~a~~ei~~~~~~ 1119 (2158)
..+.|.+++. ++++ .|.+. +|..+-++++.|++.|.-.||...+-
T Consensus 733 ~~i~~df~~c~c~d~ce~~~~~lse~ii~lR~~gk~p~~Isr~l~~~Ygi~aYpgDif~wLd~~vr~Lea~~rIArvf~k 812 (830)
T COG1202 733 LLIYMDFLNCTCRDCCECAEQRLSEKIIELRIEGKDPSQISRILEKRYGIQAYPGDIFTWLDTLVRLLEAIGRIARVFKK 812 (830)
T ss_pred HHHHHHHhcCchhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhCeeecChhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6666777663 1222 24443 89999999999999999999988777
Q ss_pred HHHHHHHHHHHHHHHcc
Q 000114 1120 AQLAEKALNLSKMVTKR 1136 (2158)
Q Consensus 1120 ~~~~~~~~~l~~~v~~~ 1136 (2158)
...+..+..|.+-|+.+
T Consensus 813 r~~~~ea~~lk~~ie~~ 829 (830)
T COG1202 813 REVEAEAKALKKKIEEG 829 (830)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 77777888887776643
|
|
| >PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-50 Score=496.33 Aligned_cols=307 Identities=38% Similarity=0.667 Sum_probs=239.3
Q ss_pred ccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHhcCccccCCCCCcchHHHHHHHhhcCccccCCCCCCChHHHH
Q 000114 1831 PSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKA 1910 (2158)
Q Consensus 1831 ~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~~~K~ 1910 (2158)
||++|+|||+|||++.||+.|...+++.++..++|++||.|.||+++|+|++|+..|++|.+.+|++++...+.+|+.|+
T Consensus 1 pT~lG~i~s~yyi~~~T~~~~~~~l~~~~~~~~il~~l~~a~EF~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~ 80 (314)
T PF02889_consen 1 PTELGRIMSRYYISFETMENFFESLKEDMSEKDILELLSSAEEFSEIPVRHNEKKELNELNKKIPYPIKKEKINDPHIKA 80 (314)
T ss_dssp ---CGC--------HHHHHHHHHH--TT--HHHHHHHHHTSGGGCCS---TTHHHHHHHHHCCSSS--STS-TTSHHHHH
T ss_pred CCHHHHHHHHhcccHHHHHHHHHHCCCCCCHHHHHHHHcCcHhHhhCccchhhHHHHHHHHHhcccCccccccccHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999887556788999999
Q ss_pred HHHHHHHhcCCCCC-CCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHH
Q 000114 1911 NALLQAHFSRQQVG-GNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDL 1989 (2158)
Q Consensus 1911 ~lLLqAhlsR~~lp-~~l~~D~~~Il~~~~rLl~a~vdi~~~~g~l~~~l~~m~L~q~i~Q~~w~~~s~L~QLP~~~~~~ 1989 (2158)
++||||||+|+++| .+|.+|+.+|+++++||++||+|++..+||+.++.++|+|+|||+||+|++++||+|||||+++.
T Consensus 81 ~~Llqa~l~r~~l~~~~l~~D~~~i~~~~~Rll~a~~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~L~Qlp~i~~~~ 160 (314)
T PF02889_consen 81 FVLLQAHLSRIPLPDSSLRQDLKYILDNAPRLLRAMIEIALEKGWLSTALNALELSQCIVQALWDSDSPLLQLPHIGEES 160 (314)
T ss_dssp HHHHHHHHCT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHHHHTS-TTS-GGGGSTT--HHH
T ss_pred HHHHHHhccCCCcCchhHHhhHHhhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhcCCCCChhhcCCCCCHHH
Confidence 99999999999999 89999999999999999999999999999999999999999999999998899999999999999
Q ss_pred HHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHccCCceEEEEEEeccc-cccCCCeEEEEEEEEEcCC
Q 000114 1990 AKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSE-NVRAGEDITLQVVLERDLE 2068 (2158)
Q Consensus 1990 ~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~~P~i~v~~~v~~~~-~v~~g~~~~l~v~l~r~~~ 2068 (2158)
++++.++| |.++.+|+++++++++.+++.+++++++|.++++++|.++|++++.+.. .+. ..+++.|++++.+
T Consensus 161 ~~~l~~~~---i~~l~~l~~~~~~e~~~ll~~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~~~--~~~~v~v~i~~~~- 234 (314)
T PF02889_consen 161 LKKLEKRG---IKTLQDLRDLSPEELEELLNRNPPFGKEILEVASRIPRLEIKASVQVIDEEIV--PILTVQVSITRKF- 234 (314)
T ss_dssp HHHHHHTT-----SHHHHHHS-HHHHHHHH-S-HHHHHHHHHHHCCS--EEEEEEETTCCGEEC--SEEEEEEEEEESS-
T ss_pred HHHHhccC---CCcHHHHhhCCHHHHHHHHhhhhhhHHHHHHHHHHCCCEEEEEEEeccccccC--CcEEEEEEEEccc-
Confidence 99999999 9999999999999999999988999999999999999999988886532 121 5689999999954
Q ss_pred CCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeec-cc--ceEEEEEEEecCCCCc--eEEEEEEEeCCccccC
Q 000114 2069 GRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSL-QR--KSRVKLDFAAPAEAGK--KTYTLYFMCDSYMGCD 2143 (2158)
Q Consensus 2069 ~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~-~~--~~~~~l~f~~P~~~G~--~~~~l~~~sDsY~G~D 2143 (2158)
...++||+.|.|+||++|||.++|+|++++|+++ .+ .....++|.+|..+|. ++|+++++||+|+|+|
T Consensus 235 -------~~~~~~~~~k~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~vp~~~~~~~~~~~v~v~sd~y~G~d 307 (314)
T PF02889_consen 235 -------SWSDRFPKKKKESWWLFVGDSKNNELLHFERITISKKKSKDTVKISFQVPIPVGPRPYQYTVYVISDSYLGLD 307 (314)
T ss_dssp -------S-SST-SS--B--EEEEEEECCCTEEEEEEEE---SS--EEEEEEEEE--SS-EE--EEEEEEEEESS-SS--
T ss_pred -------ccccCCCCCCcccEEEEEEECCCCeEEEEeeeehhhhccCCcEEEEEEecCCCCCCCceEEEEEEECCccccc
Confidence 3345999999999999999999999999999999 44 6789999999976677 9999999999999999
Q ss_pred cEEEEEE
Q 000114 2144 QEYAFTV 2150 (2158)
Q Consensus 2144 ~~~~~~l 2150 (2158)
++++|+|
T Consensus 308 ~~~~i~~ 314 (314)
T PF02889_consen 308 QEVPINF 314 (314)
T ss_dssp EEEEEEE
T ss_pred eEEEeeC
Confidence 9999976
|
This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X. |
| >smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=498.54 Aligned_cols=308 Identities=45% Similarity=0.765 Sum_probs=293.6
Q ss_pred cccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhhcCCCCCC-CCCCChhH
Q 000114 994 FQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVK-ESLEEPSA 1072 (2158)
Q Consensus 994 ~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l~~~~~~~~~-~~~~~~~~ 1072 (2158)
+.+|++|++||+|||++.||+.|++.+++.++..++|+++|.|.||.++++|++|+.+|.+|.+.+|++.+ ...+.++.
T Consensus 2 ~~~T~~Grias~yYI~~~T~~~f~~~l~~~~~~~~lL~~ls~a~Ef~~i~vR~~E~~~l~~l~~~~~~~~~~~~~~~~~~ 81 (312)
T smart00611 2 IWPTDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLLEELAEKLPIRLENPSLDDPHV 81 (312)
T ss_pred cccchhHHHHhhhccChHHHHHHHHhcCCCCCHHHHHHHHhCcHhhCCCCCCccHHHHHHHHHHhCCcCcCCCCCCCchH
Confidence 67999999999999999999999999999999999999999999999999999999999999999998876 45788999
Q ss_pred HHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCCccccCCCCH
Q 000114 1073 KINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPN 1152 (2158)
Q Consensus 1073 K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~ri~~a~~ei~~~~~~~~~~~~~~~l~~~v~~~~w~~~~~l~q~~~~~~ 1152 (2158)
|+++||||||+|++++.++|.+|+.+|+++|.||++||+||+..+||+..+..+++|+|||+||+|++++||+|||++++
T Consensus 82 K~~lLLqa~i~r~~l~~~~l~~D~~~vl~~a~rll~al~di~~~~~~~~~~~~~l~L~q~i~q~~w~~~~~L~Qlp~i~~ 161 (312)
T smart00611 82 KANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMVDIALERGWLSTALNALNLSQMIIQALWPTDSPLLQLPHLPE 161 (312)
T ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhCCCCCccccCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC-CchhhccCChHHhhhhhcCc-hhHHHHHHHHhcCCcceEEEEEeeccCceEEEEEEEecCCcccCCCC
Q 000114 1153 EILMKLEKKDF-AWERYYDLSPQELGELIRFP-KMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWDDKVH 1230 (2158)
Q Consensus 1153 ~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~P~~~~~~~~~p~~~~~~~~~l~~~~~~~~~~~~~ 1230 (2158)
+.+++|+++|+ +++++.++++++++.+++.+ +.++.|+++++.||++++++.++|+++..+++.++++++|.|+..+|
T Consensus 162 ~~~~~l~~~~i~s~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~l~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 241 (312)
T smart00611 162 EILKRLEKKKVLSLEDLLELEDEERGELLGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVLGVEVTLTVDLTWDDEIH 241 (312)
T ss_pred HHHHHHHhCCCCCHHHHHhcCHHHHHHHHcCCHHHHHHHHHHHHhCCcceeEEEEcCCcccccCceEEEEEEEEEccccc
Confidence 99999999985 89999999999999999876 88999999999999999999999999999999999999999999999
Q ss_pred CCcccEEEEEEeCCCCeEeeeehhhhhccccccccEEEEEEeccCCCCCeEEEEEecccccCCCcccccccc
Q 000114 1231 GYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFR 1302 (2158)
Q Consensus 1231 ~~~~~~~~~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSd~wlg~e~~~~i~~~ 1302 (2158)
+..+.||+||+|++++.|+|+++|++++....+++.++|.+|...|. ++|+++++||+|+|++...+++|+
T Consensus 242 ~k~e~~~l~v~d~~~~~il~~~~~~~~~~~~~~~~~l~f~~P~~~~~-~~~~v~v~SD~y~g~d~~~~i~~~ 312 (312)
T smart00611 242 GKQEGWWLVIGDSDGNELLHIERFSLNKKNVSEEVKLDFTAPATEGN-YQYTLRLVSDSYLGCDQEYPLSFD 312 (312)
T ss_pred CCcccEEEEEEeCCCCEEEEEEEEEEEeecCCCcEEEEEEecCCCCc-ceEEEEEEecccCCcceEEEEeeC
Confidence 99999999999999999999999999887665678999999976555 999999999999999999988763
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-45 Score=431.46 Aligned_cols=545 Identities=21% Similarity=0.276 Sum_probs=389.2
Q ss_pred hHHHHHhc--CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH
Q 000114 1330 PLYEALYQ--GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2158)
Q Consensus 1330 ~~~~~l~~--gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~ 1407 (2158)
+.++.++. |+.++.|+|+.++.+-+-.++|.+|+++|+||||+++++|-+..+.. .++ +.+|++|..|||+|.+
T Consensus 203 e~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~--~g~--KmlfLvPLVALANQKy 278 (830)
T COG1202 203 EKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS--GGK--KMLFLVPLVALANQKY 278 (830)
T ss_pred HHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh--CCC--eEEEEehhHHhhcchH
Confidence 45666665 79999999999999966667889999999999999999998887766 244 8999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEcCCcchh-------hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-C
Q 000114 1408 RDWEIKFGQGLGMRVVELTGETAMD-------LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-Q 1479 (2158)
Q Consensus 1408 ~~~~~~f~~~~g~~v~~ltG~~~~~-------~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~ 1479 (2158)
.+|++++++. |+++..-.|-.... ...-..+||||+|.|-+|.++|.- ..+.+|+.|||||+|++.+ +
T Consensus 279 ~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg---~~lgdiGtVVIDEiHtL~deE 354 (830)
T COG1202 279 EDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG---KDLGDIGTVVIDEIHTLEDEE 354 (830)
T ss_pred HHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC---CcccccceEEeeeeeeccchh
Confidence 9999999764 88887666643222 222345699999999999999872 6689999999999999988 7
Q ss_pred CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEeccccc-chHHHHHh
Q 000114 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIT-NFEARMQA 1558 (2158)
Q Consensus 1480 ~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~-~~~~~~~~ 1558 (2158)
+|+.+.-++.|++++. +..|+|+||||+.|+.+++..||+.. ...+.||||++.|+.-.... ........
T Consensus 355 RG~RLdGLI~RLr~l~----~~AQ~i~LSATVgNp~elA~~l~a~l-----V~y~~RPVplErHlvf~~~e~eK~~ii~~ 425 (830)
T COG1202 355 RGPRLDGLIGRLRYLF----PGAQFIYLSATVGNPEELAKKLGAKL-----VLYDERPVPLERHLVFARNESEKWDIIAR 425 (830)
T ss_pred cccchhhHHHHHHHhC----CCCeEEEEEeecCChHHHHHHhCCee-----EeecCCCCChhHeeeeecCchHHHHHHHH
Confidence 9999999999999984 48999999999999999999999875 23356999999998654422 22222222
Q ss_pred cChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEE
Q 000114 1559 MTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGY 1638 (2158)
Q Consensus 1559 ~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~ 1638 (2158)
+.+..+...... .-.+++|||++||+.|..+|..|.. -+..+.+
T Consensus 426 L~k~E~~~~ssk-g~rGQtIVFT~SRrr~h~lA~~L~~-----------------------------------kG~~a~p 469 (830)
T COG1202 426 LVKREFSTESSK-GYRGQTIVFTYSRRRCHELADALTG-----------------------------------KGLKAAP 469 (830)
T ss_pred HHHHHHhhhhcc-CcCCceEEEecchhhHHHHHHHhhc-----------------------------------CCccccc
Confidence 333333332222 4468899999999999999966621 1345789
Q ss_pred ecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEE----ecceeecCCCCcCcCCCHHHHHHhhccCCCCC
Q 000114 1639 LHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV----MGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2158)
Q Consensus 1639 ~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI----~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g 1714 (2158)
||+||+..+|+.++..|.++.+.++|+|.+++.|||+|+..||+ ||. .++++.+|.||.||||||+
T Consensus 470 YHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~----------~WLs~~EF~QM~GRAGRp~ 539 (830)
T COG1202 470 YHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGI----------EWLSVREFQQMLGRAGRPD 539 (830)
T ss_pred ccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHccc----------ccCCHHHHHHHhcccCCCC
Confidence 99999999999999999999999999999999999999999987 444 3568999999999999999
Q ss_pred CCCceEEEEEecCChH----------HHHHHHhh-CCCccccchhh-HHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhh
Q 000114 1715 LDNSGKCVILCHAPRK----------EYYKKFLY-DAFPVESHLHH-FLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRR 1782 (2158)
Q Consensus 1715 ~d~~G~~iil~~~~~~----------~~~~k~l~-~~~piES~L~~-~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrR 1782 (2158)
+...|++++++.+.++ +.--++|+ +++|+.-...+ .-.+.+.| ..+...+.++ ++-+
T Consensus 540 yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~~-i~~v-------- 608 (830)
T COG1202 540 YHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLSV-IERV-------- 608 (830)
T ss_pred cccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHHH-Hhhc--------
Confidence 9999999999987653 22234555 67787766632 22233333 3344444443 1111
Q ss_pred hccCCCCccCCCCCcccHHHHHHHHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCCCCHH
Q 000114 1783 LTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMK 1862 (2158)
Q Consensus 1783 l~~nP~~Y~~~~~~~~~~~~~l~~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~ 1862 (2158)
|+.+.|-. --.+.++..|++.|+|..+. +.+.||+.|+++|.+++.|.++..+...+-..+.
T Consensus 609 ---~~~~~g~~------------~~~~k~l~~Lee~g~i~~~G-~~v~~T~yGrava~~Fl~p~~a~~Ir~~v~~~~~-- 670 (830)
T COG1202 609 ---NSLMLGAA------------FDPKKALSKLEEYGMIKKKG-NIVRPTPYGRAVAMSFLGPSEAEFIREGVLASMD-- 670 (830)
T ss_pred ---Chhhcccc------------CCHHHHHHHHHhcCCeeccC-CEeeeccccceeEEeecCchHHHHHHHhhhccCC--
Confidence 22222211 01367899999999997642 3599999999999999999999999987544433
Q ss_pred HHHHHHhcCccccCCCCCcchHHHHHHH-hhcCccccCC----------CCC--CChH--HHHHHHHHHHhcCC------
Q 000114 1863 GLLEVLASASEYAQLPIRPGEEEVVRRL-IHHQRFSFEN----------PKF--TDPH--VKANALLQAHFSRQ------ 1921 (2158)
Q Consensus 1863 ~lL~ils~a~Ef~~i~vR~~E~~~l~~L-~~~~p~~~~~----------~~~--~~~~--~K~~lLLqAhlsR~------ 1921 (2158)
.+.+++.-.=|++..+...=...+... .-++|-.+-. .++ -+|. .|.+++.+..++..
T Consensus 671 -pl~i~~~l~pfE~ayls~~l~r~i~~~~~~~vpsr~f~~a~~~I~~e~d~ii~ld~k~~e~l~~i~~df~~c~c~d~ce 749 (830)
T COG1202 671 -PLRIAAELEPFENAYLSGFLKRAIESALRGRVPSRLFDSALLDILEEGDKIIELDPKLKEKLLLIYMDFLNCTCRDCCE 749 (830)
T ss_pred -hHhHhhccccccccccChHHHHHHHHHhcCCCchhhhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHHHhcCchhhhHH
Confidence 345555555566555443322222221 2223322210 001 1342 34555555555420
Q ss_pred -------------C--------CC---------CCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000114 1922 -------------Q--------VG---------GNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQM 1967 (2158)
Q Consensus 1922 -------------~--------lp---------~~l~~D~~~Il~~~~rLl~a~vdi~~~~g~l~~~l~~m~L~q~ 1967 (2158)
. ++ ..|..|...-|+++.|++.|.-.|+..++--..+..|+.|..-
T Consensus 750 ~~~~~lse~ii~lR~~gk~p~~Isr~l~~~Ygi~aYpgDif~wLd~~vr~Lea~~rIArvf~kr~~~~ea~~lk~~ 825 (830)
T COG1202 750 CAEQRLSEKIIELRIEGKDPSQISRILEKRYGIQAYPGDIFTWLDTLVRLLEAIGRIARVFKKREVEAEAKALKKK 825 (830)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhCeeecChhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 0 11 1356788888999999998888888665543333344444443
|
|
| >PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-47 Score=469.66 Aligned_cols=305 Identities=39% Similarity=0.662 Sum_probs=243.2
Q ss_pred cChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhhcCCCCC-CCCCCChhHHH
Q 000114 996 VTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV-KESLEEPSAKI 1074 (2158)
Q Consensus 996 ~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l~~~~~~~~-~~~~~~~~~K~ 1074 (2158)
||++|+|||+|||++.||..|.+.+++.++..++|.++|.|.||+++++|++|+.+|.+|..++|+|+ ++.+.+++.|+
T Consensus 1 pT~lG~i~s~yyi~~~T~~~~~~~l~~~~~~~~il~~l~~a~EF~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~ 80 (314)
T PF02889_consen 1 PTELGRIMSRYYISFETMENFFESLKEDMSEKDILELLSSAEEFSEIPVRHNEKKELNELNKKIPYPIKKEKINDPHIKA 80 (314)
T ss_dssp ---CGC--------HHHHHHHHHH--TT--HHHHHHHHHTSGGGCCS---TTHHHHHHHHHCCSSS--STS-TTSHHHHH
T ss_pred CCHHHHHHHHhcccHHHHHHHHHHCCCCCCHHHHHHHHcCcHhHhhCccchhhHHHHHHHHHhcccCccccccccHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999998 77799999999
Q ss_pred HHHHHHHHcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCCccccCCCCHHH
Q 000114 1075 NVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEI 1154 (2158)
Q Consensus 1075 ~~llq~~i~~~~~~~~~l~~d~~~i~~~a~ri~~a~~ei~~~~~~~~~~~~~~~l~~~v~~~~w~~~~~l~q~~~~~~~~ 1154 (2158)
++||||||+|+++++++|.+|+.+|+++|.||++||+|||..+||+..+.++++|+|||.||+|+..+||+|||||+++.
T Consensus 81 ~~Llqa~l~r~~l~~~~l~~D~~~i~~~~~Rll~a~~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~L~Qlp~i~~~~ 160 (314)
T PF02889_consen 81 FVLLQAHLSRIPLPDSSLRQDLKYILDNAPRLLRAMIEIALEKGWLSTALNALELSQCIVQALWDSDSPLLQLPHIGEES 160 (314)
T ss_dssp HHHHHHHHCT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHHHHTS-TTS-GGGGSTT--HHH
T ss_pred HHHHHHhccCCCcCchhHHhhHHhhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhcCCCCChhhcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCC-CCchhhccCChHHhhhhhc-CchhHHHHHHHHhcCCcceEEEEEeeccCce---EEEEEEEecCCcccCCC
Q 000114 1155 LMKLEKKD-FAWERYYDLSPQELGELIR-FPKMGRTLHKFVHQFPKLILAAHVQPITRTV---LKVELTITPDFLWDDKV 1229 (2158)
Q Consensus 1155 ~~~l~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~P~~~~~~~~~p~~~~~---~~~~l~~~~~~~~~~~~ 1229 (2158)
+++|+++| .+++++.++++++++.+++ .+..|+.|.+++++||++++++.++|++.+. ++|+|++++.+.|+..+
T Consensus 161 ~~~l~~~~i~~l~~l~~~~~~e~~~ll~~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~~~~~~~v~v~i~~~~~~~~~~ 240 (314)
T PF02889_consen 161 LKKLEKRGIKTLQDLRDLSPEELEELLNRNPPFGKEILEVASRIPRLEIKASVQVIDEEIVPILTVQVSITRKFSWSDRF 240 (314)
T ss_dssp HHHHHHTT--SHHHHHHS-HHHHHHHH-S-HHHHHHHHHHHCCS--EEEEEEETTCCGEECSEEEEEEEEEESSS-SST-
T ss_pred HHHHhccCCCcHHHHhhCCHHHHHHHHhhhhhhHHHHHHHHHHCCCEEEEEEEeccccccCCcEEEEEEEEcccccccCC
Confidence 99999999 4899999999999999997 7889999999999999999999999999888 99999999999999999
Q ss_pred CCC-cccEEEEEEeCCCCeEeeeehhhh-hccccccccEEEEEEecc-CCCCCeEEEEEecccccCCCccccccc
Q 000114 1230 HGY-VEPFWVIVEDNDGEYILHHEYFML-KKQYIEEDHSLNFTVPIY-EPLPPQYFIRVVSDKWLGSQTVLPVSF 1301 (2158)
Q Consensus 1230 ~~~-~~~~~~~v~d~~~~~i~~~~~~~l-~~~~~~~~~~~~f~vp~~-~p~p~~y~v~~vSd~wlg~e~~~~i~~ 1301 (2158)
|+. .+.||++|+|.+++.|++++++.+ +++ ....+.++|++|.. .|.|++|.++++||+|+|++..++++|
T Consensus 241 ~~~k~~~~~~~v~~~~~~~l~~~~~~~~~~~~-~~~~~~~~f~vp~~~~~~~~~~~v~v~sd~y~G~d~~~~i~~ 314 (314)
T PF02889_consen 241 PKKKKESWWLFVGDSKNNELLHFERITISKKK-SKDTVKISFQVPIPVGPRPYQYTVYVISDSYLGLDQEVPINF 314 (314)
T ss_dssp SS--B--EEEEEEECCCTEEEEEEEE---SS---EEEEEEEEE--SS-EE--EEEEEEEEESS-SS--EEEEEEE
T ss_pred CCCCcccEEEEEEECCCCeEEEEeeeehhhhc-cCCcEEEEEEecCCCCCCCceEEEEEEECCccccceEEEeeC
Confidence 999 899999999999999999999999 332 34678899999976 566699999999999999999988875
|
This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X. |
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-45 Score=418.55 Aligned_cols=336 Identities=22% Similarity=0.338 Sum_probs=280.8
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.|++.|++||++++|.++.+.+ +|..|.||||||.+|.+||++.+...+ ..+.+++++|||+||.|+.+.|
T Consensus 79 l~~~~PT~IQ~~aiP~~L~g~d-vIglAeTGSGKT~afaLPIl~~LL~~p--------~~~~~lVLtPtRELA~QI~e~f 149 (476)
T KOG0330|consen 79 LGWKKPTKIQSEAIPVALGGRD-VIGLAETGSGKTGAFALPILQRLLQEP--------KLFFALVLTPTRELAQQIAEQF 149 (476)
T ss_pred hCcCCCchhhhhhcchhhCCCc-EEEEeccCCCchhhhHHHHHHHHHcCC--------CCceEEEecCcHHHHHHHHHHH
Confidence 5799999999999999999877 999999999999999999999998854 3589999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHh---hhccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccccc-CChhhHHH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLES 645 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~ 645 (2158)
..+....|++|..+.|+.+...+ ....++|+|+||+++ |.+.+..+ ..+..++++|+||||.++| ++++.++.
T Consensus 150 e~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkg--f~le~lk~LVlDEADrlLd~dF~~~ld~ 227 (476)
T KOG0330|consen 150 EALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKG--FSLEQLKFLVLDEADRLLDMDFEEELDY 227 (476)
T ss_pred HHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccC--ccHHHhHHHhhchHHhhhhhhhHHHHHH
Confidence 99989999999999999886654 356899999999995 88875544 5688999999999999998 68888888
Q ss_pred HHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEe-cCCccccc-ceeEEEeeccCChhHHHHHhhHHH
Q 000114 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYF-DNSYRPVP-LSQQYIGIQVKKPLQRFQLMNDLC 723 (2158)
Q Consensus 646 iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f-~~~~rpv~-l~~~~~~~~~~~~~~~~~~l~~~~ 723 (2158)
|+..+ +...|.+++|||+| ..+.+..+..+..+.-.. ...|+.++ +.++|+.++.+.....+
T Consensus 228 ILk~i-------p~erqt~LfsATMt--~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yL------- 291 (476)
T KOG0330|consen 228 ILKVI-------PRERQTFLFSATMT--KKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYL------- 291 (476)
T ss_pred HHHhc-------CccceEEEEEeecc--hhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhH-------
Confidence 87765 57889999999999 677777777766554443 34455553 55666666554322211
Q ss_pred HHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCC
Q 000114 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG 803 (2158)
Q Consensus 724 ~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHag 803 (2158)
. .+++...++++||||++...+..++-.|...++.+..+ ||.
T Consensus 292 V-~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~L-------------------------------------hGq 333 (476)
T KOG0330|consen 292 V-YLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPL-------------------------------------HGQ 333 (476)
T ss_pred H-HHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecc-------------------------------------cch
Confidence 1 12333447899999999999999999999988776555 999
Q ss_pred CCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEE
Q 000114 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (2158)
Q Consensus 804 l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (2158)
|++..|.-.++.|++|...|||||++++||+|+|.+++||| ||.|. +..||+||+||+||.| .+|.+|
T Consensus 334 msq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN----yDiP~------~skDYIHRvGRtaRaG--rsG~~I 401 (476)
T KOG0330|consen 334 MSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN----YDIPT------HSKDYIHRVGRTARAG--RSGKAI 401 (476)
T ss_pred hhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe----cCCCC------cHHHHHHHcccccccC--CCcceE
Confidence 99999999999999999999999999999999999999999 77665 6779999999999999 789999
Q ss_pred EEcCCCcHHHHHHh---hcCCCc
Q 000114 884 IITGHSELRYYLSL---MNQQLP 903 (2158)
Q Consensus 884 il~~~~~~~~y~~l---l~~~~p 903 (2158)
.++++-+.+.|.++ +...+|
T Consensus 402 tlVtqyDve~~qrIE~~~gkkl~ 424 (476)
T KOG0330|consen 402 TLVTQYDVELVQRIEHALGKKLP 424 (476)
T ss_pred EEEehhhhHHHHHHHHHHhcCCC
Confidence 99999998888763 444443
|
|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-45 Score=455.40 Aligned_cols=658 Identities=23% Similarity=0.331 Sum_probs=448.8
Q ss_pred CCChhhHhhc---CCCCCCCHHHHHHH--HHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEE
Q 000114 481 EMPEWAQPAF---KGMTQLNRVQSRVY--KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVY 555 (2158)
Q Consensus 481 ~lp~~~~~~f---~g~~~l~~iQ~~~i--~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~ 555 (2158)
-+|+.....+ +|...+..+|.+|+ +.++ +.+|+|..+||++|||+++.+-|++.+...+. +++.
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~-e~~nliys~Pts~gktlvaeilml~~~l~~rr----------~~ll 274 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLL-ERKNLIYSLPTSAGKTLVAEILMLREVLCRRR----------NVLL 274 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhh-cccceEEeCCCccchHHHHHHHHHHHHHHHhh----------ceeE
Confidence 4455444433 78889999999998 4445 77899999999999999999999998776532 6999
Q ss_pred EcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccc
Q 000114 556 VAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 556 iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
+.|..+.+++....+..++.++|+.|.++.|...... ..+...+.|||.||-..+.....+...+..+++|||||.|++
T Consensus 275 ilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~-~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi 353 (1008)
T KOG0950|consen 275 ILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEK-RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMI 353 (1008)
T ss_pred ecceeehhHHHHhhhhhhccccCCcchhhcccCCCCC-cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeee
Confidence 9999999999999999999999999999997665443 345678999999997666665544456677999999999999
Q ss_pred cc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEE-eeccCChh
Q 000114 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI-GIQVKKPL 713 (2158)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~-~~~~~~~~ 713 (2158)
+| +||..+|.++++++...... .+|+||||||+||..+++.|+... ++...|||+|+..... |......
T Consensus 354 ~d~~rg~~lE~~l~k~~y~~~~~--~~~iIGMSATi~N~~lL~~~L~A~------~y~t~fRPv~L~E~ik~G~~i~~~- 424 (1008)
T KOG0950|consen 354 GDKGRGAILELLLAKILYENLET--SVQIIGMSATIPNNSLLQDWLDAF------VYTTRFRPVPLKEYIKPGSLIYES- 424 (1008)
T ss_pred eccccchHHHHHHHHHHHhcccc--ceeEeeeecccCChHHHHHHhhhh------heecccCcccchhccCCCcccccc-
Confidence 99 79999999999998755433 389999999999999999999853 5677899999987542 1111111
Q ss_pred HHHHHhhHHH---------------HHHHHHHhC-CCeEEEEecChHHHHHHHHHHHHHhhccccccccccc-CchhHHH
Q 000114 714 QRFQLMNDLC---------------YEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKE-DSVSREI 776 (2158)
Q Consensus 714 ~~~~~l~~~~---------------~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~-~~~~~~~ 776 (2158)
.+...+.++. .....+... +.++||||++|+.|+.+|..+.........-..++.. +..+...
T Consensus 425 ~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~ 504 (1008)
T KOG0950|consen 425 SRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISN 504 (1008)
T ss_pred hhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHh
Confidence 0111111111 111122223 5679999999999999997776543322111111100 0000000
Q ss_pred HHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCcc
Q 000114 777 LQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAW 856 (2158)
Q Consensus 777 l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~ 856 (2158)
........-+..++..+++|++|||+|++.++|+.|+..|+.|.+.|++||+|+++|||+|+.+|||.. ||-. .
T Consensus 505 ~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIira--P~~g----~ 578 (1008)
T KOG0950|consen 505 LLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRA--PYVG----R 578 (1008)
T ss_pred HhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeC--Cccc----c
Confidence 111223445777999999999999999999999999999999999999999999999999999999972 2222 2
Q ss_pred ccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHhhcCCC-cccchhhH----hhHHHHHHHHHhccccChHHH
Q 000114 857 TELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQL-PIESQFVS----KLADQLNAEIVLGTVQNAKEA 931 (2158)
Q Consensus 857 ~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~-pieS~l~~----~l~d~lnaeI~~~~i~~~~~~ 931 (2158)
..++..+|.||+|||||.|.|+.|.+++++...+...+..+++.+. |+-|++.. .+...+..-|+.+...+.+|.
T Consensus 579 ~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~~~~~S~l~~e~~g~~~~~ilsvI~~~ia~t~~di 658 (1008)
T KOG0950|consen 579 EFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPLKPLNSCLSNEVNGPILMAILSLISLKIAETAEDI 658 (1008)
T ss_pred chhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHhccccccccccccccccccceeehhhhcchhhhhHHHH
Confidence 4568899999999999999999999999999999988888887765 56666643 122344556777888899999
Q ss_pred HHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHHH-HHHhHCCCcc-ccccCCccccChHHHHHHHhccC
Q 000114 932 CNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAA-TILDRNNLVK-YDRKSGYFQVTDLGRIASYYYIS 1009 (2158)
Q Consensus 932 ~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~-~~L~~~~~i~-~~~~~~~~~~T~lG~i~s~~yi~ 1009 (2158)
..+..+|+++..... ..-..+.+ .+.+.. .+..+. ..+-...+|. -........+|+||+..=.-.++
T Consensus 659 ~~~va~tl~s~q~~~--~~~~~~le-~~s~ql-------~~~~~~~d~~l~~d~i~~~~~~~~~~~~t~Lg~a~f~~~~~ 728 (1008)
T KOG0950|consen 659 LHFVAVTLLSAQEKP--ENVREQLE-MESDQL-------VINDFKSDQLLEKDFIYKKQIENLRENITRLGRACFNAGSD 728 (1008)
T ss_pred HHHHHHhhhhcccch--hhhhhccc-chhhhh-------ccchhhHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCC
Confidence 999999998876321 11111111 000000 001111 1122222222 11111222389999987666677
Q ss_pred cccHHHHHhhcCCCC----------------------CHHHHHHHhhCCccCCCCcCChhHHHHHHHHh-------hcCC
Q 000114 1010 HGTISTYNEHLKPTM----------------------GDIELCRLFSLSEEFKYVTVRQDEKMELAKLL-------DRVP 1060 (2158)
Q Consensus 1010 ~~t~~~~~~~l~~~~----------------------~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l~-------~~~~ 1060 (2158)
+.-...+...|+..+ +..+.+..++. |.. +.+-|+. +.++. .++.
T Consensus 729 ~~~a~~l~~~L~~~~~~~vle~~lh~lylvtP~~~~~~~~dwli~f~i---~~~--L~~~~~~-~~~~~G~~e~fi~~~~ 802 (1008)
T KOG0950|consen 729 PEVANILFADLKKSLPQLVLESSLHLLYLVTPYLEVMNDIDWLIYFQI---YHT--LPSPEQK-LAKLLGVIESFIEKCV 802 (1008)
T ss_pred hhhhHHHHHHHHHhhhccccccccceeeeecchHhhcccccHHHHHHH---Hhc--CCcHHHH-HHhhhchHHHHHHHhh
Confidence 654443333222211 11111111111 001 1111211 11111 1110
Q ss_pred C-CCCCCCCCh----hHHHHHHHHHHHcCCCC----CCCccc-chHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000114 1061 I-PVKESLEEP----SAKINVLLQAYISQLKL----EGLSLT-SDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLS 1130 (2158)
Q Consensus 1061 ~-~~~~~~~~~----~~K~~~llq~~i~~~~~----~~~~l~-~d~~~i~~~a~ri~~a~~ei~~~~~~~~~~~~~~~l~ 1130 (2158)
. .......+. ..=+...||.+++..++ ++|... +=+...+++|.+...++.-.|.+.+|.......-++-
T Consensus 803 ~gqs~~~~~~~~~~~r~y~~l~L~~li~espi~~V~~kYk~~rg~lqall~~a~~~a~~It~Fce~l~w~~~~~l~~~~~ 882 (1008)
T KOG0950|consen 803 SGQSVRNLQNVQKRKRLYVALALQKLINESPIRTVAEKYKVERGRLQALLSNASSFASLITFFCESIQWFPLRALLSEFY 882 (1008)
T ss_pred hccccccccchhHHHHHHHHHHHHHHHhhCcHHHHHHHhCchHHHHHHHHhcchhHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 0 000001111 12267889999999987 556655 4456788999999999999999999985545555677
Q ss_pred HHHHcccCCCCCCccccCCCCHHHHHHHHhCCC-CchhhccCChHHhhhhhc
Q 000114 1131 KMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIR 1181 (2158)
Q Consensus 1131 ~~v~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 1181 (2158)
+++..+.-.+..||..+|++...++++|+.+|+ ++.+|..-++.++..-+.
T Consensus 883 ~rl~~g~~~eL~~Lmrv~~~~~~RAr~lf~Agf~tv~~iA~a~p~klvkel~ 934 (1008)
T KOG0950|consen 883 GRLSFGGHAELIPLMRVPDVKAERARQLFKAGFTSVGSIANATPEKLVKELP 934 (1008)
T ss_pred HHHhccchhhhhhhhcCchhHHHHHHHHHHhhccchHHHhcCChHHHHHHhh
Confidence 888888888999999999999999999999998 567777778888776654
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=475.14 Aligned_cols=413 Identities=24% Similarity=0.341 Sum_probs=294.3
Q ss_pred CCCChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 480 SEMPEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 480 ~~lp~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
+.|++.+++.| .+|..|||+|.++++.++.+ +|++++||||||||++|++|+++.+......+ ....+.++|||+|
T Consensus 16 ~~l~~~v~~~~~~~~~~~tpiQ~~Ai~~il~g-~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~--~~~~~~~~LyIsP 92 (876)
T PRK13767 16 DLLRPYVREWFKEKFGTFTPPQRYAIPLIHEG-KNVLISSPTGSGKTLAAFLAIIDELFRLGREG--ELEDKVYCLYVSP 92 (876)
T ss_pred hhcCHHHHHHHHHccCCCCHHHHHHHHHHHcC-CCEEEECCCCCcHHHHHHHHHHHHHHhhcccc--CCCCCeEEEEEcC
Confidence 45677777777 67899999999999998766 57999999999999999999999886532111 0124678999999
Q ss_pred cHHHHHHHHHHHHhhc-----------ccC-CcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccc
Q 000114 559 MKALVAEVVGNLSNRL-----------QMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQL 623 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~-----------~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~ 623 (2158)
+|||+.|+++++...+ ... ++++...+||.....+. ...++|+|||||++..+.+.......+.+
T Consensus 93 traLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~ 172 (876)
T PRK13767 93 LRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRT 172 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhc
Confidence 9999999998766322 122 67899999998765542 34789999999999776655433346789
Q ss_pred cceEEeeccccccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccc----cCceEEecCCc-cc
Q 000114 624 VKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNL----EKGLFYFDNSY-RP 697 (2158)
Q Consensus 624 v~lIIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~----~~~~~~f~~~~-rp 697 (2158)
+++|||||||.+.+ .||..++.++.|+.... ....|+|++|||++|.++++.|+.... ..........+ ++
T Consensus 173 l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~---~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~ 249 (876)
T PRK13767 173 VKWVIVDEIHSLAENKRGVHLSLSLERLEELA---GGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKP 249 (876)
T ss_pred CCEEEEechhhhccCccHHHHHHHHHHHHHhc---CCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCcc
Confidence 99999999999986 69999999999886543 357899999999999999999997531 11222222221 22
Q ss_pred ccceeEEEeeccCCh-hHHHHHhhHHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHH
Q 000114 698 VPLSQQYIGIQVKKP-LQRFQLMNDLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSRE 775 (2158)
Q Consensus 698 v~l~~~~~~~~~~~~-~~~~~~l~~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~ 775 (2158)
..+.. . ...... ......+...++..+.+.. ..+++|||||||+.|+.++..|.......
T Consensus 250 ~~i~v--~-~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~--------------- 311 (876)
T PRK13767 250 FDIKV--I-SPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEE--------------- 311 (876)
T ss_pred ceEEE--e-ccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhh---------------
Confidence 22111 1 000000 0000111222333333332 26789999999999999999987632110
Q ss_pred HHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCc
Q 000114 776 ILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGA 855 (2158)
Q Consensus 776 ~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~ 855 (2158)
....++++|||+|++++|..+++.|++|.++|||||+++++|||+|++++||+ |++|.
T Consensus 312 ----------------~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~----~~~P~-- 369 (876)
T PRK13767 312 ----------------YDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL----LGSPK-- 369 (876)
T ss_pred ----------------ccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE----eCCCC--
Confidence 12467999999999999999999999999999999999999999999999999 66664
Q ss_pred cccCCHHHHHHhhcccCCCCCCCccEEEEEcCC-CcHHH---HH-Hhhc---CCCcccchhhHhhHHHHHHHHHhccccC
Q 000114 856 WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH-SELRY---YL-SLMN---QQLPIESQFVSKLADQLNAEIVLGTVQN 927 (2158)
Q Consensus 856 ~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~-~~~~~---y~-~ll~---~~~pieS~l~~~l~d~lnaeI~~~~i~~ 927 (2158)
|+.+|+||+|||||.+ +..+.+++++.. .+.-. +. .... ++..+...-...|..|+.+.++. ...+
T Consensus 370 ----sv~~ylQRiGRaGR~~-g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i~~~~~~-~~~~ 443 (876)
T PRK13767 370 ----SVSRLLQRIGRAGHRL-GEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLAQHIVGMAIE-RPWD 443 (876)
T ss_pred ----CHHHHHHhcccCCCCC-CCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHc-CCCC
Confidence 7889999999999853 233444444433 33221 11 1111 11112223345678888886555 4678
Q ss_pred hHHHHHHHHhhHHHHHh
Q 000114 928 AKEACNWIGYTYLYIRM 944 (2158)
Q Consensus 928 ~~~~~~wl~~t~~~~r~ 944 (2158)
.+++.+|++.||.|..+
T Consensus 444 ~~~~~~~~~~~~~~~~l 460 (876)
T PRK13767 444 IEEAYNIVRRAYPYRDL 460 (876)
T ss_pred HHHHHHHHhccCCcccC
Confidence 99999999999988753
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=447.33 Aligned_cols=450 Identities=23% Similarity=0.299 Sum_probs=334.7
Q ss_pred cCCCChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc
Q 000114 479 ISEMPEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557 (2158)
Q Consensus 479 i~~lp~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~ia 557 (2158)
.+.||++++++| ..|.+|||.|.+|++.+..| .|+||+||||||||++|.||++..+.... +....++..+|||+
T Consensus 5 ~~~l~~~v~~~~~~~~~~~t~~Q~~a~~~i~~G-~nvLiiAPTGsGKTeAAfLpil~~l~~~~---~~~~~~~i~~lYIs 80 (814)
T COG1201 5 FNILDPRVREWFKRKFTSLTPPQRYAIPEIHSG-ENVLIIAPTGSGKTEAAFLPVINELLSLG---KGKLEDGIYALYIS 80 (814)
T ss_pred hhhcCHHHHHHHHHhcCCCCHHHHHHHHHHhCC-CceEEEcCCCCChHHHHHHHHHHHHHhcc---CCCCCCceEEEEeC
Confidence 456899999999 55999999999999999855 67999999999999999999999998752 11123568999999
Q ss_pred ccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeecccc
Q 000114 558 PMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 558 P~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
|.|||..++.+++...+..+|+.|..-|||+....++ .+.+||+|||||.+..+.....-+..+.+|+++||||+|.
T Consensus 81 PLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHe 160 (814)
T COG1201 81 PLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHA 160 (814)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhh
Confidence 9999999999999999999999999999999877654 4578999999999976665545567899999999999998
Q ss_pred ccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChh
Q 000114 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (2158)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (2158)
+.+ .||..+...+.|+.... .+.|.||||||+.+.+++++||.........+-...-++..+............
T Consensus 161 l~~sKRG~~Lsl~LeRL~~l~----~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~- 235 (814)
T COG1201 161 LAESKRGVQLALSLERLRELA----GDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYD- 235 (814)
T ss_pred hhccccchhhhhhHHHHHhhC----cccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccc-
Confidence 876 79999999999886532 289999999999999999999987631112222222222222211111110000
Q ss_pred HHHHHhhHHHHHHHHHHhC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhh
Q 000114 714 QRFQLMNDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (2158)
Q Consensus 714 ~~~~~l~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l 792 (2158)
.......+..+.+..+ ...+|||+|||..|+.++..|...+.
T Consensus 236 ---~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~---------------------------------- 278 (814)
T COG1201 236 ---EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGP---------------------------------- 278 (814)
T ss_pred ---cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcC----------------------------------
Confidence 1112223333433333 34799999999999999999887531
Q ss_pred ccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccC
Q 000114 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2158)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2158)
..+..|||+++++.|..+|+.|++|+++++|||++|+-|||+.+++.||+ |..|+ |+..++||+||+|
T Consensus 279 --~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq----~~SP~------sV~r~lQRiGRsg 346 (814)
T COG1201 279 --DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQ----LGSPK------SVNRFLQRIGRAG 346 (814)
T ss_pred --CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEE----eCCcH------HHHHHhHhccccc
Confidence 45899999999999999999999999999999999999999999999999 77766 8999999999999
Q ss_pred CCCCCCccEEEEEcCCCcHHHHHH------hhc---CCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHH
Q 000114 873 RPQYDSYGEGIIITGHSELRYYLS------LMN---QQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIR 943 (2158)
Q Consensus 873 R~g~d~~G~~iil~~~~~~~~y~~------ll~---~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r 943 (2158)
+ +.+...++++++.+- .+.++. .+. +..++.-.-...|..++++.+... .-+.+++.+.++.+|.|..
T Consensus 347 H-r~~~~Skg~ii~~~r-~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~-~~~~~~~y~~vrraypy~~ 423 (814)
T COG1201 347 H-RLGEVSKGIIIAEDR-DDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALEK-VWEVEEAYRVVRRAYPYAD 423 (814)
T ss_pred c-ccCCcccEEEEecCH-HHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhC-cCCHHHHHHHHHhcccccc
Confidence 8 456778999998872 222221 111 134455555667888888877776 7788999998888887754
Q ss_pred hhcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhH--CCCccccccCCccccChHHHHHHHhccCcccH
Q 000114 944 MLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDR--NNLVKYDRKSGYFQVTDLGRIASYYYISHGTI 1013 (2158)
Q Consensus 944 ~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~--~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~ 1013 (2158)
+ +. +-..+.++.|.. .+.++...... -..+.-.....+||.+..|+
T Consensus 424 L---------~~--------------e~f~~v~~~l~~~~~~~~~i~~~~~-~~~~~~~~~~~~y~~n~~tI 471 (814)
T COG1201 424 L---------SR--------------EDFRLVLRYLAGEKNVYAKIWLDED-GLFGRGKGTRMIYYMNYGTI 471 (814)
T ss_pred C---------CH--------------HHHHHHHHHHhhcccceeEEeecCc-ceeccCccceeeeeeccccc
Confidence 2 22 123456677777 66665543221 12233334446666666555
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-42 Score=466.50 Aligned_cols=423 Identities=22% Similarity=0.317 Sum_probs=304.3
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcC----CCceEEEEEcccHHHHH
Q 000114 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE----TGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~----~~~~~~v~IaP~raLa~ 1404 (2158)
+.+.+.+. +|..|+|+|+++++.+++ ++|++++||||||||++|.+|++..+..... ..++++|||+|+++|+.
T Consensus 20 ~~v~~~~~~~~~~~tpiQ~~Ai~~il~-g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~ 98 (876)
T PRK13767 20 PYVREWFKEKFGTFTPPQRYAIPLIHE-GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNN 98 (876)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHc-CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHH
Confidence 45566665 689999999999999877 5579999999999999999999998875311 22458999999999999
Q ss_pred HHHHHHHHHh----------cCCC-CcEEEEEcCCcchhhh--cc-cCCcEEEeCHHHHHHHHhhhhccccccceeEEEe
Q 000114 1405 ERYRDWEIKF----------GQGL-GMRVVELTGETAMDLK--LL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFII 1470 (2158)
Q Consensus 1405 q~~~~~~~~f----------~~~~-g~~v~~ltG~~~~~~~--~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIi 1470 (2158)
|+++++...+ +... ++++...+|+++...+ .+ ..++|+|+|||++..+++....+..++++++|||
T Consensus 99 di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVI 178 (876)
T PRK13767 99 DIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIV 178 (876)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEE
Confidence 9998765322 2222 7789999999876543 33 3569999999999988876554456899999999
Q ss_pred cccccccC-CCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCC-----Cc-eEecCCCCcccccEEE
Q 000114 1471 DELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATS-----HG-LFNFPPGVRPVPLEIH 1543 (2158)
Q Consensus 1471 DEaH~l~~-~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~-----~~-i~~f~~~~rpv~l~~~ 1543 (2158)
||+|.+.+ .+|..++..+.|+..+. +.+.|+|++|||++|.++++.|++... .. .+......++..+.+.
T Consensus 179 DE~H~l~~~~RG~~l~~~L~rL~~l~---~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~ 255 (876)
T PRK13767 179 DEIHSLAENKRGVHLSLSLERLEELA---GGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVI 255 (876)
T ss_pred echhhhccCccHHHHHHHHHHHHHhc---CCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEe
Confidence 99999886 57999999999998875 357899999999999999999997642 11 1111122233222222
Q ss_pred EecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhh
Q 000114 1544 IQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNI 1623 (2158)
Q Consensus 1544 i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i 1623 (2158)
.......... ...+....+..+...+..++++||||||++.|+.++..|...+..
T Consensus 256 ~p~~~l~~~~--~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~----------------------- 310 (876)
T PRK13767 256 SPVDDLIHTP--AEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPE----------------------- 310 (876)
T ss_pred ccCccccccc--cchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchh-----------------------
Confidence 1111100000 011223344555555566789999999999999999877542110
Q ss_pred hHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHH
Q 000114 1624 QEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDL 1703 (2158)
Q Consensus 1624 ~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~ 1703 (2158)
.....++++|||+|+.++|..+++.|++|.++|||||+++++|||+|++.+|| ++..|.++.+|
T Consensus 311 ------~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI----------~~~~P~sv~~y 374 (876)
T PRK13767 311 ------EYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVV----------LLGSPKSVSRL 374 (876)
T ss_pred ------hccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEE----------EeCCCCCHHHH
Confidence 01346799999999999999999999999999999999999999999999999 45677899999
Q ss_pred HHhhccCCCCC-CCCceEEEEEecCChHH---HHHHHhh-CCCcc--ccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHH
Q 000114 1704 LQMMGHASRPL-LDNSGKCVILCHAPRKE---YYKKFLY-DAFPV--ESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTW 1776 (2158)
Q Consensus 1704 lQr~GRaGR~g-~d~~G~~iil~~~~~~~---~~~k~l~-~~~pi--ES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~ 1776 (2158)
+||+|||||.+ ....|.++......-.+ ..+.... ...++ ...-...|..|+.+-+..+ .-+.+++.+++..
T Consensus 375 lQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i~~~~~~~-~~~~~~~~~~~~~ 453 (876)
T PRK13767 375 LQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLAQHIVGMAIER-PWDIEEAYNIVRR 453 (876)
T ss_pred HHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHcC-CCCHHHHHHHHhc
Confidence 99999999974 22345555432221111 1122222 12222 2222456788888866664 6689999999999
Q ss_pred hhhhhhhccCCCCccCCCCCcccHHHHHHHHHHHHHHHHHhC
Q 000114 1777 TFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEAS 1818 (2158)
Q Consensus 1777 t~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~lve~~l~~L~~~ 1818 (2158)
||+|+.+.. +..+.+|..|...
T Consensus 454 ~~~~~~l~~--------------------~~~~~~l~~l~~~ 475 (876)
T PRK13767 454 AYPYRDLSD--------------------EDFESVLRYLAGD 475 (876)
T ss_pred cCCcccCCH--------------------HHHHHHHHHHhcc
Confidence 999986543 4556667777665
|
|
| >KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-43 Score=389.36 Aligned_cols=300 Identities=31% Similarity=0.512 Sum_probs=258.8
Q ss_pred cCCCCCHHHHHHHHhcCcccc-----CCCCCcchHHHHHHHhhcCcc---ccCCCCCCCh-HHHHHHHHHHHhcCCCCCC
Q 000114 1855 LTPKTRMKGLLEVLASASEYA-----QLPIRPGEEEVVRRLIHHQRF---SFENPKFTDP-HVKANALLQAHFSRQQVGG 1925 (2158)
Q Consensus 1855 l~~~~~~~~lL~ils~a~Ef~-----~i~vR~~E~~~l~~L~~~~p~---~~~~~~~~~~-~~K~~lLLqAhlsR~~lp~ 1925 (2158)
-+++|.++.+|.+||.|.||+ ++.-|+.+.-.+..|.+.++- +...+.+..| +.|+.+||.|||+|++|++
T Consensus 7 kTp~M~~kR~imVLags~EFdkqyNk~iqeR~tDn~evP~Lirqi~~vN~K~kE~PL~~pYslKaRvlLhahLsRmpl~~ 86 (520)
T KOG4434|consen 7 RTPRMEIKRMIMVLAGSFEFDKQYNKEIQERETDNYEVPRLIRQIAGVNDKGKEQPLSQPYSLKARVLLHAHLSRMPLES 86 (520)
T ss_pred cCchhHHHHHHHHHhcccccChhhchhhhccCCcchHHHHHHHHcccccccccCCCccCchhHHHHHHHHHHHhcCCCCh
Confidence 467788899999999999997 678899998888888887653 3333445556 7999999999999999985
Q ss_pred -CchhhHHHHHHHHHHHHHHHHHHHHhc----------C--CHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHH
Q 000114 1926 -NLKLDQEEVLLSASRLLQAMVDVISSN----------G--WLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKR 1992 (2158)
Q Consensus 1926 -~l~~D~~~Il~~~~rLl~a~vdi~~~~----------g--~l~~~l~~m~L~q~i~Q~~w~~~s~L~QLP~~~~~~~~~ 1992 (2158)
.|..|+.+|+.+|++|++.||.++... . .+.+.-|||.|++|++||+|...|||+|||||++..+.+
T Consensus 87 dtLEeDqqfiikkcp~lvqEMVnc~~qLi~May~r~~~r~psiet~eNcmKlspM~vQgLwqfkSPLLQLPHitednL~~ 166 (520)
T KOG4434|consen 87 DTLEEDQQFIIKKCPRLVQEMVNCSQQLIVMAYSRHTRRIPSIETFENCMKLSPMFVQGLWQFKSPLLQLPHITEDNLQH 166 (520)
T ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHHHHhccHHHHHHHHHhcChhhcCCccchHHHHH
Confidence 899999999999999999999986532 1 245667999999999999999999999999999999999
Q ss_pred HHhCCCCCccCHHHHhcCCHHHHHHHhC-CChHHHHHHHHHHccCCceEEEEE--Eec---cccccCCCeEEEEEEEEEc
Q 000114 1993 CQENPGKSIETVFDLVEMEDDERRELLQ-MSDVQLLDIARFCNRFPNIDMSFE--VQD---SENVRAGEDITLQVVLERD 2066 (2158)
Q Consensus 1993 l~~~~~~~i~tv~dl~~~~~~~r~~ll~-~~~~~~~~v~~~~~~~P~i~v~~~--v~~---~~~v~~g~~~~l~v~l~r~ 2066 (2158)
+.++- .|++++||+.|..+.|..+|. |++.++++|+.++..+|.|.++++ |.| .+.+++|+.||+.|+|+|.
T Consensus 167 ~~KKr--~vks~qdla~lk~e~rr~lL~~LsdeeYe~vM~VLg~mP~~~~~ik~~V~dded~n~~TaG~vVTv~Vtl~R~ 244 (520)
T KOG4434|consen 167 LRKKR--KVKSCQDLAVLKAETRRSLLRSLSDEEYEDVMVVLGMMPRLQIEIKTVVEDDEDKNELTAGCVVTVKVTLRRS 244 (520)
T ss_pred Hhhhc--ccccHHHHhhcCHHHHHHHHHhcchHHHHHHHHHHccCcceEEEeeEEEecCCcccceeeeeEEEEEEEEEec
Confidence 87543 399999999999999999997 899999999999999999988554 544 3579999999999999872
Q ss_pred C--C-------------------CC-------------------------------------------------------
Q 000114 2067 L--E-------------------GR------------------------------------------------------- 2070 (2158)
Q Consensus 2067 ~--~-------------------~~------------------------------------------------------- 2070 (2158)
. + ++
T Consensus 245 ~l~d~~e~~~~d~~k~paedG~~de~n~ea~g~~~eaaa~~~~~~vKK~kpw~K~Kpk~~kkpaq~Q~~qK~v~~~aas~ 324 (520)
T KOG4434|consen 245 RLIDPQEAGLADQYKKPAEDGGDDENNLEASGAPEEAAATVEEEEVKKRKPWEKNKPKQKKKPAQGQGQQKFVKKNAASP 324 (520)
T ss_pred cccChHhhhhhhhhhCchhhCCCcccchhccCChhhhccccchhhhhhcCchhhcCCCcccCccccchhhhhcccccCCh
Confidence 1 0 00
Q ss_pred -----------------------------------------------------------------------cccCccccC
Q 000114 2071 -----------------------------------------------------------------------TEVGPVYSN 2079 (2158)
Q Consensus 2071 -----------------------------------------------------------------------~~~~~v~ap 2079 (2158)
.-+++||||
T Consensus 325 at~ka~eeea~~~~sD~E~e~~n~Ds~dees~asd~~~D~e~~~~~ddddd~EWe~lqa~~~kr~~lEtKs~~tHtVh~p 404 (520)
T KOG4434|consen 325 ATEKALEEEAKDKGSDSEEEETNRDSQDEESDASDRDSDREQDEKQDDDDDAEWEELQASIQKRALLETKSKITHTVHSP 404 (520)
T ss_pred hhhhhhHHHhhhcCcchhhhhhcccccccccccCccccchhhccccccccHHHHHHHHHHHHHHHhhhcccccceeeccC
Confidence 003589999
Q ss_pred CCCCCccccEEEEEEECCCCeEEEEE--EeecccceEEEEEEEecCCCCceEEEEEEEeCCccccCcEEEEEEEeecCC
Q 000114 2080 RYPKAKEEGWWLVVGDTKTNQLLAIK--RVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVDVKEAG 2156 (2158)
Q Consensus 2080 ~fp~~k~e~Wwlvvgd~~~~~L~~~k--rv~~~~~~~~~l~f~~P~~~G~~~~~l~~~sDsY~G~D~~~~~~l~V~~~~ 2156 (2158)
|||.+|.|+||++|.|.++.+|+.+. -.++..+.++.|.|+||+.||.|+|+|++.||||+|+||..+++++|.++.
T Consensus 405 yFPeEKqEwWW~Yi~drKsrtLlt~PyhV~tL~d~eei~lkF~AP~~pG~Ytytv~lrSDSYmg~dq~~~lKldV~eAk 483 (520)
T KOG4434|consen 405 YFPEEKQEWWWLYIADRKSRTLLTMPYHVCTLKDTEEIELKFPAPGKPGNYTYTVFLRSDSYMGLDQIKPLKLDVHEAK 483 (520)
T ss_pred CCcchhhheeeeeeecccccceecchhhhhcccccceeEEeccCCCCCCceEEEEEEecccccChhhccceeeeeccCC
Confidence 99999999999999999999999974 357788999999999999999999999999999999999999999998764
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=422.00 Aligned_cols=335 Identities=20% Similarity=0.298 Sum_probs=257.3
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.||..|+|||.+.+|.++.+.+ ++..|.||||||++|++|++.++..+.. .....+++.+|+++|||+||.|+.+.+
T Consensus 109 ~g~~~PtpIQaq~wp~~l~GrD-~v~iA~TGSGKTLay~lP~i~~l~~~~~--~~~~~~~P~vLVL~PTRELA~QV~~~~ 185 (519)
T KOG0331|consen 109 QGFEKPTPIQAQGWPIALSGRD-LVGIARTGSGKTLAYLLPAIVHLNNEQG--KLSRGDGPIVLVLAPTRELAVQVQAEA 185 (519)
T ss_pred cCCCCCchhhhcccceeccCCc-eEEEeccCCcchhhhhhHHHHHHHhccc--cccCCCCCeEEEEcCcHHHHHHHHHHH
Confidence 7999999999999999999977 9999999999999999999999986311 112235789999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccccc-CChhhHHH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLES 645 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~ 645 (2158)
.++...++++..+++|+.+...+. ..+.+|+|+||+++ |.+.... ..++++.++|+||||+|+| ++.+.++.
T Consensus 186 ~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~---~~l~~v~ylVLDEADrMldmGFe~qI~~ 262 (519)
T KOG0331|consen 186 REFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGS---LNLSRVTYLVLDEADRMLDMGFEPQIRK 262 (519)
T ss_pred HHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCC---ccccceeEEEeccHHhhhccccHHHHHH
Confidence 999988889999999999887765 35789999999998 6666655 4678899999999999998 79999998
Q ss_pred HHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecC-C--cc-cccceeEEEeeccCChhHHHHHhhH
Q 000114 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDN-S--YR-PVPLSQQYIGIQVKKPLQRFQLMND 721 (2158)
Q Consensus 646 iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~-~--~r-pv~l~~~~~~~~~~~~~~~~~~l~~ 721 (2158)
|+.++ .++..|.++.|||.|. .+..+.......+...... . .. ...+.+....+. ...+...+..
T Consensus 263 Il~~i------~~~~rQtlm~saTwp~--~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~---~~~K~~~l~~ 331 (519)
T KOG0331|consen 263 ILSQI------PRPDRQTLMFSATWPK--EVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCD---ETAKLRKLGK 331 (519)
T ss_pred HHHhc------CCCcccEEEEeeeccH--HHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcC---HHHHHHHHHH
Confidence 88766 2344489999999993 3333332221111111111 1 00 111111111111 1112222222
Q ss_pred HHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEec
Q 000114 722 LCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801 (2158)
Q Consensus 722 ~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hH 801 (2158)
+ ...+. ...++++||||+|++.|.+++..|...++. +...|
T Consensus 332 l-L~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~-------------------------------------a~~iH 372 (519)
T KOG0331|consen 332 L-LEDIS-SDSEGKVIIFCETKRTCDELARNLRRKGWP-------------------------------------AVAIH 372 (519)
T ss_pred H-HHHHh-ccCCCcEEEEecchhhHHHHHHHHHhcCcc-------------------------------------eeeec
Confidence 1 11122 223679999999999999999999876533 34459
Q ss_pred CCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccE
Q 000114 802 AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881 (2158)
Q Consensus 802 agl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~ 881 (2158)
|+.++.+|..+++.|++|...|||||+++|||+|+|+|++||+ ||+|. ++.+|+||+||+||+| ..|.
T Consensus 373 Gd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn----ydfP~------~vEdYVHRiGRTGRa~--~~G~ 440 (519)
T KOG0331|consen 373 GDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN----YDFPN------NVEDYVHRIGRTGRAG--KKGT 440 (519)
T ss_pred ccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEe----CCCCC------CHHHHHhhcCccccCC--CCce
Confidence 9999999999999999999999999999999999999999999 88887 8899999999999977 7899
Q ss_pred EEEEcCCCcHHH
Q 000114 882 GIIITGHSELRY 893 (2158)
Q Consensus 882 ~iil~~~~~~~~ 893 (2158)
++.+.+..+...
T Consensus 441 A~tfft~~~~~~ 452 (519)
T KOG0331|consen 441 AITFFTSDNAKL 452 (519)
T ss_pred EEEEEeHHHHHH
Confidence 999998876544
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=456.78 Aligned_cols=354 Identities=21% Similarity=0.221 Sum_probs=268.2
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.||+.+.+++ .||++|+++|.++++.++.+ +|++++||||||||++|.+|+++.+... .+.++|||+|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G-~nvvv~apTGSGKTla~~LPiL~~l~~~---------~~~~aL~l~P 89 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAG-RHVVVATGTASGKSLAYQLPVLSALADD---------PRATALYLAP 89 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCC-CCEEEECCCCCcHHHHHHHHHHHHHhhC---------CCcEEEEEcC
Confidence 4667777777 68999999999999998876 5699999999999999999999998753 2458999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh--hccccEEEcchhHHHH-HHh-ccCCCccccccceEEeecccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ--IEETQIIVTTPEKWDI-ITR-KSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~--~~~~~IiV~TPekld~-l~r-~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
||||+.|+.+.++++. ..++++..++|+.....+. ..+++|+|+||+.+.. +.. .......++++++|||||+|.
T Consensus 90 traLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~ 168 (742)
T TIGR03817 90 TKALAADQLRAVRELT-LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHS 168 (742)
T ss_pred hHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhh
Confidence 9999999999999875 4578999999998755432 3568999999998742 222 111124578999999999999
Q ss_pred cccCChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeecc-----
Q 000114 635 LHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQV----- 709 (2158)
Q Consensus 635 l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~----- 709 (2158)
+.+.+|..+..++.|+.+.....+.++|++++|||++|..+++.++... +....+....|.......+....
T Consensus 169 ~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~---~~~~i~~~~~~~~~~~~~~~~p~~~~~~ 245 (742)
T TIGR03817 169 YRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGA---PVVAVTEDGSPRGARTVALWEPPLTELT 245 (742)
T ss_pred ccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCC---CeEEECCCCCCcCceEEEEecCCccccc
Confidence 9878999999999999888777778899999999999998888776543 23334444334332221111110
Q ss_pred -CC--hhHH--HHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcc
Q 000114 710 -KK--PLQR--FQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMV 784 (2158)
Q Consensus 710 -~~--~~~~--~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 784 (2158)
.. ...+ .......+...+ . .+.++||||+||+.|+.++..|........
T Consensus 246 ~~~~~~~r~~~~~~~~~~l~~l~-~--~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~----------------------- 299 (742)
T TIGR03817 246 GENGAPVRRSASAEAADLLADLV-A--EGARTLTFVRSRRGAELVAAIARRLLGEVD----------------------- 299 (742)
T ss_pred cccccccccchHHHHHHHHHHHH-H--CCCCEEEEcCCHHHHHHHHHHHHHHHHhhc-----------------------
Confidence 00 0000 001111121111 1 267999999999999999998876421100
Q ss_pred CcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHH
Q 000114 785 KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (2158)
Q Consensus 785 ~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2158)
..+..++..|||||++++|..+++.|++|++++||||+++++|||+|++++||+ |+.|. +..+|
T Consensus 300 ------~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~----~~~P~------s~~~y 363 (742)
T TIGR03817 300 ------PDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVI----AGFPG------TRASL 363 (742)
T ss_pred ------cccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEE----eCCCC------CHHHH
Confidence 012345788999999999999999999999999999999999999999999999 66654 78899
Q ss_pred HHhhcccCCCCCCCccEEEEEcCCCcHH
Q 000114 865 MQMLGRAGRPQYDSYGEGIIITGHSELR 892 (2158)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~~~~ 892 (2158)
+||+|||||.| ..|.+++++..+..+
T Consensus 364 ~qRiGRaGR~G--~~g~ai~v~~~~~~d 389 (742)
T TIGR03817 364 WQQAGRAGRRG--QGALVVLVARDDPLD 389 (742)
T ss_pred HHhccccCCCC--CCcEEEEEeCCChHH
Confidence 99999999988 569999998765443
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=431.77 Aligned_cols=441 Identities=21% Similarity=0.284 Sum_probs=338.1
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc---CCCceEEEEEcccHHHHHH
Q 000114 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~---~~~~~~~v~IaP~raLa~q 1405 (2158)
+.+.+.|. .|..|||.|.++|+.++. +.|+||+||||||||++|.||++..+.... +.++..||||+|.|||..+
T Consensus 10 ~~v~~~~~~~~~~~t~~Q~~a~~~i~~-G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~D 88 (814)
T COG1201 10 PRVREWFKRKFTSLTPPQRYAIPEIHS-GENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNND 88 (814)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHhC-CCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHH
Confidence 34455554 699999999999999985 677999999999999999999999998852 2345799999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcchhhh---cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCC
Q 000114 1406 RYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGG 1481 (2158)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~ltG~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g 1481 (2158)
+..++. ..+..+|+.|..-|||++...+ ..+.+||+|+|||.+..++..-+.+..+.++.++||||+|.+.+ .+|
T Consensus 89 i~~rL~-~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG 167 (814)
T COG1201 89 IRRRLE-EPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRG 167 (814)
T ss_pred HHHHHH-HHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccc
Confidence 999998 4455679999999999987633 33445999999999988877656777899999999999997765 799
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCC-CceEecCCCCcccccEEEEecccccchHHHHHhcC
Q 000114 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATS-HGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (2158)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~-~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~ 1560 (2158)
..+-..+.|++.+.. +.|.||||||+.+.+++++||+... ...+.-.+..+...+.+.......... ....
T Consensus 168 ~~Lsl~LeRL~~l~~----~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~----~~~~ 239 (814)
T COG1201 168 VQLALSLERLRELAG----DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYD----EELW 239 (814)
T ss_pred hhhhhhHHHHHhhCc----ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccc----cchh
Confidence 999999999998853 7899999999999999999998875 333333344455555554433332222 1223
Q ss_pred hHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEec
Q 000114 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2158)
Q Consensus 1561 k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H 1640 (2158)
...+..+...+...+.+|||+|||.+++.++..|.. .....+..||
T Consensus 240 ~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~----------------------------------~~~~~i~~HH 285 (814)
T COG1201 240 AALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKK----------------------------------LGPDIIEVHH 285 (814)
T ss_pred HHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHH----------------------------------hcCCceeeec
Confidence 344555555656778999999999999999976632 2235699999
Q ss_pred CCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceE
Q 000114 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2158)
Q Consensus 1641 ~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~ 1720 (2158)
|.++.+.|..+++.|++|+++++|||++++-|||+..+..|| +...|.+++.++||+||+|+.- +...+
T Consensus 286 gSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVI----------q~~SP~sV~r~lQRiGRsgHr~-~~~Sk 354 (814)
T COG1201 286 GSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVI----------QLGSPKSVNRFLQRIGRAGHRL-GEVSK 354 (814)
T ss_pred ccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEE----------EeCCcHHHHHHhHhcccccccc-CCccc
Confidence 999999999999999999999999999999999999999999 5677889999999999999865 67788
Q ss_pred EEEEecCChHHHHH----------HHhhCCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCc
Q 000114 1721 CVILCHAPRKEYYK----------KFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYY 1790 (2158)
Q Consensus 1721 ~iil~~~~~~~~~~----------k~l~~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y 1790 (2158)
+++++.+ ..+.+. ..+....+.+-.| ..|..|+++.+... --+..++.+.++.+|.|+.|..
T Consensus 355 g~ii~~~-r~dllE~~vi~~~a~~g~le~~~i~~~~L-DVLaq~ivg~~~~~-~~~~~~~y~~vrraypy~~L~~----- 426 (814)
T COG1201 355 GIIIAED-RDDLLECLVLADLALEGKLERIKIPKNPL-DVLAQQIVGMALEK-VWEVEEAYRVVRRAYPYADLSR----- 426 (814)
T ss_pred EEEEecC-HHHHHHHHHHHHHHHhCCcccCCCCCcch-hHHHHHHHHHHhhC-cCCHHHHHHHHHhccccccCCH-----
Confidence 8888877 334332 2222233344444 55667777777766 6688899999999999975432
Q ss_pred cCCCCCcccHHHHHHHHHHHHHHHHHh--CCCeeEcCCCcccccccchhhhhcccChhhH
Q 000114 1791 NLQGVSHRHLSDHLSELVENTISDLEA--SKCIIIEEDMDLSPSNHGMIASYYYISYTTI 1848 (2158)
Q Consensus 1791 ~~~~~~~~~~~~~l~~lve~~l~~L~~--~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~ 1848 (2158)
+-.+++++.|.. .+.+.+..+.+-.-........+||.+..|+
T Consensus 427 ---------------e~f~~v~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~y~~n~~tI 471 (814)
T COG1201 427 ---------------EDFRLVLRYLAGEKNVYAKIWLDEDGLFGRGKGTRMIYYMNYGTI 471 (814)
T ss_pred ---------------HHHHHHHHHHhhcccceeEEeecCcceeccCccceeeeeeccccc
Confidence 556777888887 7777765443311222344445666655554
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-42 Score=399.42 Aligned_cols=347 Identities=21% Similarity=0.322 Sum_probs=279.5
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.||..|+|||.++||.++.+.+ ++.||.||||||.+|++|+|..+.-.+.. ....+||+++|||+|+.|++..+
T Consensus 199 lGy~~PTpIQ~a~IPvallgkD-Ica~A~TGsGKTAAF~lPiLERLlYrPk~-----~~~TRVLVL~PTRELaiQv~sV~ 272 (691)
T KOG0338|consen 199 LGYKKPTPIQVATIPVALLGKD-ICACAATGSGKTAAFALPILERLLYRPKK-----VAATRVLVLVPTRELAIQVHSVT 272 (691)
T ss_pred cCCCCCCchhhhcccHHhhcch-hhheecccCCchhhhHHHHHHHHhcCccc-----CcceeEEEEeccHHHHHHHHHHH
Confidence 3999999999999999999977 99999999999999999999998754321 24568999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccccc-CChhhHHH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLES 645 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~ 645 (2158)
+++.....|.|+...|+.++..+. ...++|+|+||+++ |++. ++.. ..+.++.++|+|||++|++ .+...+..
T Consensus 273 ~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlr-Ns~s-f~ldsiEVLvlDEADRMLeegFademnE 350 (691)
T KOG0338|consen 273 KQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLR-NSPS-FNLDSIEVLVLDEADRMLEEGFADEMNE 350 (691)
T ss_pred HHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhc-cCCC-ccccceeEEEechHHHHHHHHHHHHHHH
Confidence 999888899999999999987765 46899999999998 5554 4432 5688999999999999987 57666666
Q ss_pred HHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecC--CcccccceeEEEeeccCChhHHHHHhhHHH
Q 000114 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDN--SYRPVPLSQQYIGIQVKKPLQRFQLMNDLC 723 (2158)
Q Consensus 646 iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~--~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~ 723 (2158)
|+.. .+.+.|.+++|||+. +.|.......+.+++..|.. ...+..|.+.|+.+.......+-..+..++
T Consensus 351 ii~l-------cpk~RQTmLFSATMt--eeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~ 421 (691)
T KOG0338|consen 351 IIRL-------CPKNRQTMLFSATMT--EEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLI 421 (691)
T ss_pred HHHh-------ccccccceeehhhhH--HHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHH
Confidence 6543 467889999999997 67777777777777665543 445566888888777655443322222222
Q ss_pred HHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCC
Q 000114 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG 803 (2158)
Q Consensus 724 ~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHag 803 (2158)
-. .-...+||||.|++.|.++--.|--.|.. ++-.||.
T Consensus 422 ~r-----tf~~~~ivFv~tKk~AHRl~IllGLlgl~-------------------------------------agElHGs 459 (691)
T KOG0338|consen 422 TR-----TFQDRTIVFVRTKKQAHRLRILLGLLGLK-------------------------------------AGELHGS 459 (691)
T ss_pred HH-----hcccceEEEEehHHHHHHHHHHHHHhhch-------------------------------------hhhhccc
Confidence 21 12567999999999999887766555544 3444999
Q ss_pred CCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEE
Q 000114 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (2158)
Q Consensus 804 l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (2158)
|++.+|...++.|++++++|||||++++||+|++++.+||| |+.|. ++..|+||+||+.|+| ..|.+|
T Consensus 460 LtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN----y~mP~------t~e~Y~HRVGRTARAG--RaGrsV 527 (691)
T KOG0338|consen 460 LTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVIN----YAMPK------TIEHYLHRVGRTARAG--RAGRSV 527 (691)
T ss_pred ccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEe----ccCch------hHHHHHHHhhhhhhcc--cCcceE
Confidence 99999999999999999999999999999999999999999 66655 7889999999999998 779999
Q ss_pred EEcCCCcHHHHHHhhcCCCcccchh
Q 000114 884 IITGHSELRYYLSLMNQQLPIESQF 908 (2158)
Q Consensus 884 il~~~~~~~~y~~ll~~~~pieS~l 908 (2158)
.++..++...++..+....-..+.+
T Consensus 528 tlvgE~dRkllK~iik~~~~a~~kl 552 (691)
T KOG0338|consen 528 TLVGESDRKLLKEIIKSSTKAGSKL 552 (691)
T ss_pred EEeccccHHHHHHHHhhhhhcccch
Confidence 9999999888877665543333333
|
|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=416.54 Aligned_cols=403 Identities=27% Similarity=0.366 Sum_probs=310.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.|-.+|++||-....+ +.|+|.|+|.||||++|..+|.-.-.. ..|+||.+|.|||.+|.++.|+..|
T Consensus 297 elD~FQk~Ai~~lerg-~SVFVAAHTSAGKTvVAEYAialaq~h-----------~TR~iYTSPIKALSNQKfRDFk~tF 364 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERG-DSVFVAAHTSAGKTVVAEYAIALAQKH-----------MTRTIYTSPIKALSNQKFRDFKETF 364 (1248)
T ss_pred CccHHHHHHHHHHHcC-CeEEEEecCCCCcchHHHHHHHHHHhh-----------ccceEecchhhhhccchHHHHHHhc
Confidence 7889999999976555 669999999999999999998665433 3489999999999999999999988
Q ss_pred ccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CChhhHHHHHHHHHHH
Q 000114 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~iv~r~~~~ 653 (2158)
+. |+.+|||.+.+. .+.++|+|.|.+..+.-+.. ..++++.+||+||+|.+.| +||.+||.++--
T Consensus 365 ~D----vgLlTGDvqinP----eAsCLIMTTEILRsMLYrga--dliRDvE~VIFDEVHYiND~eRGvVWEEViIM---- 430 (1248)
T KOG0947|consen 365 GD----VGLLTGDVQINP----EASCLIMTTEILRSMLYRGA--DLIRDVEFVIFDEVHYINDVERGVVWEEVIIM---- 430 (1248)
T ss_pred cc----cceeecceeeCC----CcceEeehHHHHHHHHhccc--chhhccceEEEeeeeecccccccccceeeeee----
Confidence 75 458999998876 58899999998855554444 4678899999999999999 899999988753
Q ss_pred HhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCC------------------hhH-
Q 000114 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK------------------PLQ- 714 (2158)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~------------------~~~- 714 (2158)
.+.++++|+||||+||..+++.|++....+.+++.+..-|||||+..+..-..-. ...
T Consensus 431 ---lP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~ 507 (1248)
T KOG0947|consen 431 ---LPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK 507 (1248)
T ss_pred ---ccccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhc
Confidence 4789999999999999999999999987788888888899999987554210000 000
Q ss_pred ---HH---------------------HHh------------hH--HHHHHHHHHhC---CCeEEEEecChHHHHHHHHHH
Q 000114 715 ---RF---------------------QLM------------ND--LCYEKVVAVAG---KHQVLIFVHSRKETAKTARAI 753 (2158)
Q Consensus 715 ---~~---------------------~~l------------~~--~~~~~i~~~~~---~~~vLVFv~sr~~~~~~a~~L 753 (2158)
+. ... .. ..|-.+..+.. --|++|||-||+.|...|..|
T Consensus 508 ~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L 587 (1248)
T KOG0947|consen 508 KEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYL 587 (1248)
T ss_pred ccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHH
Confidence 00 000 00 12222333333 238999999999999999999
Q ss_pred HHHhhcccccccccccCchhHHHHHhhhhcc--Cc------chhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEE
Q 000114 754 RDTALENDTLGRFLKEDSVSREILQSHTDMV--KS------NDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLV 825 (2158)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~------~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLV 825 (2158)
.........- .+.-.-.+.+..... .+ -.+.+++.+|+++||||+-+--++.|+-+|..|-++||+
T Consensus 588 ~~~nL~~~~E------KseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLF 661 (1248)
T KOG0947|consen 588 TNLNLTDSKE------KSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLF 661 (1248)
T ss_pred hccCcccchh------HHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEe
Confidence 8754332110 000001111111111 12 356788899999999999999999999999999999999
Q ss_pred echhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCC--cHHHHHHh-hcCCC
Q 000114 826 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS--ELRYYLSL-MNQQL 902 (2158)
Q Consensus 826 aT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~--~~~~y~~l-l~~~~ 902 (2158)
||.|+|+|||.|+.+||+.+....|+.. +.++.+-+|.||+|||||.|.|..|.+|+++... +...+..+ +..+.
T Consensus 662 ATETFAMGVNMPARtvVF~Sl~KhDG~e--fR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G~~~ 739 (1248)
T KOG0947|consen 662 ATETFAMGVNMPARTVVFSSLRKHDGNE--FRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMGGPT 739 (1248)
T ss_pred ehhhhhhhcCCCceeEEeeehhhccCcc--eeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcCCCc
Confidence 9999999999999999999988888764 7899999999999999999999999999999874 66677775 67889
Q ss_pred cccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhH
Q 000114 903 PIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTY 939 (2158)
Q Consensus 903 pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~ 939 (2158)
+++|||.-.....||---+.. -.+-+.++++|
T Consensus 740 ~L~SQFRlTY~MILnLLRve~-----lrvEdm~krSf 771 (1248)
T KOG0947|consen 740 RLESQFRLTYGMILNLLRVEA-----LRVEDMMKRSF 771 (1248)
T ss_pred hhhhhhhhHHHHHHHHHHHHH-----HHHHHHHHHHh
Confidence 999999987766666432211 23445666666
|
|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=385.95 Aligned_cols=341 Identities=22% Similarity=0.303 Sum_probs=266.5
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
.+.++.+++.-. +++.|++||++++|.++.+++ ||..|.||||||.+|.+||++++.+.+. .+.+++++|||+||.
T Consensus 67 gv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~d-vIglAeTGSGKT~afaLPIl~~LL~~p~--~~~~lVLtPtRELA~ 143 (476)
T KOG0330|consen 67 GVHPELLEACQELGWKKPTKIQSEAIPVALGGRD-VIGLAETGSGKTGAFALPILQRLLQEPK--LFFALVLTPTRELAQ 143 (476)
T ss_pred CcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCc-EEEEeccCCCchhhhHHHHHHHHHcCCC--CceEEEecCcHHHHH
Confidence 345566666655 799999999999999998777 9999999999999999999999998432 369999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcchh---hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCC
Q 000114 1405 ERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~ltG~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g 1481 (2158)
|+...+. .++...|++|..+.|+.... ....+++||+|+||+++..++...+. ..+.+++++|+||||.++++.
T Consensus 144 QI~e~fe-~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkg-f~le~lk~LVlDEADrlLd~d- 220 (476)
T KOG0330|consen 144 QIAEQFE-ALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKG-FSLEQLKFLVLDEADRLLDMD- 220 (476)
T ss_pred HHHHHHH-HhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccC-ccHHHhHHHhhchHHhhhhhh-
Confidence 9999998 78888899999999997754 44567889999999999888875443 368899999999999998765
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHH---Hh
Q 000114 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM---QA 1558 (2158)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~---~~ 1558 (2158)
+...+.+|...++...|.+++|||++.- +.+...+... +|+.+...-......+..+.+ ..
T Consensus 221 -----F~~~ld~ILk~ip~erqt~LfsATMt~k--v~kL~rasl~---------~p~~v~~s~ky~tv~~lkQ~ylfv~~ 284 (476)
T KOG0330|consen 221 -----FEEELDYILKVIPRERQTFLFSATMTKK--VRKLQRASLD---------NPVKVAVSSKYQTVDHLKQTYLFVPG 284 (476)
T ss_pred -----hHHHHHHHHHhcCccceEEEEEeecchh--hHHHHhhccC---------CCeEEeccchhcchHHhhhheEeccc
Confidence 4445555666668899999999999852 2222222211 222222111111111111111 11
Q ss_pred cChHHHH-HHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEE
Q 000114 1559 MTKPTFT-AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2158)
Q Consensus 1559 ~~k~~~~-~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~ 1637 (2158)
-.++.|. .+++. ..+.++||||++...++.++..|. .++....
T Consensus 285 k~K~~yLV~ll~e-~~g~s~iVF~~t~~tt~~la~~L~-----------------------------------~lg~~a~ 328 (476)
T KOG0330|consen 285 KDKDTYLVYLLNE-LAGNSVIVFCNTCNTTRFLALLLR-----------------------------------NLGFQAI 328 (476)
T ss_pred cccchhHHHHHHh-hcCCcEEEEEeccchHHHHHHHHH-----------------------------------hcCccee
Confidence 1233332 33344 567999999999999999885552 3566788
Q ss_pred EecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCC
Q 000114 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2158)
Q Consensus 1638 ~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~ 1717 (2158)
.+||.|++..|.-.++.|++|...|||||++++||+|+|.+.+|| |+++|....||+||+||+||.| .
T Consensus 329 ~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VV----------NyDiP~~skDYIHRvGRtaRaG--r 396 (476)
T KOG0330|consen 329 PLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVV----------NYDIPTHSKDYIHRVGRTARAG--R 396 (476)
T ss_pred cccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEE----------ecCCCCcHHHHHHHcccccccC--C
Confidence 999999999999999999999999999999999999999999999 8899999999999999999998 8
Q ss_pred ceEEEEEecCChHHHHHHH
Q 000114 1718 SGKCVILCHAPRKEYYKKF 1736 (2158)
Q Consensus 1718 ~G~~iil~~~~~~~~~~k~ 1736 (2158)
+|.++.+++.-+.+.|.+.
T Consensus 397 sG~~ItlVtqyDve~~qrI 415 (476)
T KOG0330|consen 397 SGKAITLVTQYDVELVQRI 415 (476)
T ss_pred CcceEEEEehhhhHHHHHH
Confidence 9999999998877777654
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=442.38 Aligned_cols=352 Identities=18% Similarity=0.237 Sum_probs=264.9
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
|++...+.+.. ||..|+++|.++++.++++ +|++++||||||||+||.+|+++.+.. .++ .++|||+|||||+.|
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G-~nvvv~apTGSGKTla~~LPiL~~l~~-~~~--~~aL~l~PtraLa~q 96 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHAG-RHVVVATGTASGKSLAYQLPVLSALAD-DPR--ATALYLAPTKALAAD 96 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHCC-CCEEEECCCCCcHHHHHHHHHHHHHhh-CCC--cEEEEEcChHHHHHH
Confidence 33444455544 7999999999999999874 569999999999999999999999876 233 499999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcchhhh--cccCCcEEEeCHHHHHH-HHh---hhhccccccceeEEEecccccccCC
Q 000114 1406 RYRDWEIKFGQGLGMRVVELTGETAMDLK--LLEKGQIIISTPEKWDA-LSR---RWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2158)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~ltG~~~~~~~--~l~~~~IIV~TPe~l~~-l~r---~~~~~~~l~~v~llIiDEaH~l~~~ 1479 (2158)
+++.++ .++ ..++++..++|+++.+.+ ...+++|||+||+++.. ++. +|. ..++++++|||||||.+.+.
T Consensus 97 ~~~~l~-~l~-~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~--~~l~~l~~vViDEah~~~g~ 172 (742)
T TIGR03817 97 QLRAVR-ELT-LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWA--RFLRRLRYVVIDECHSYRGV 172 (742)
T ss_pred HHHHHH-Hhc-cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHH--HHHhcCCEEEEeChhhccCc
Confidence 999998 555 347899999999876533 33467999999999863 221 232 34889999999999999777
Q ss_pred CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEeccccc--chHH---
Q 000114 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIT--NFEA--- 1554 (2158)
Q Consensus 1480 ~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~--~~~~--- 1554 (2158)
.|..+..++.|++.+....+.+.|+|++|||++|..++++++...+..+ ...+..|....... .+... ....
T Consensus 173 fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~--i~~~~~~~~~~~~~-~~~p~~~~~~~~~~ 249 (742)
T TIGR03817 173 FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVA--VTEDGSPRGARTVA-LWEPPLTELTGENG 249 (742)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEE--ECCCCCCcCceEEE-EecCCccccccccc
Confidence 8889999999999998888888999999999999888887765543222 22222222211111 00000 0000
Q ss_pred -HH-HhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHh
Q 000114 1555 -RM-QAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (2158)
Q Consensus 1555 -~~-~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (2158)
.. ..........+...+..+.++||||+|++.|+.++..|...... ....+
T Consensus 250 ~~~r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~---------------------------~~~~l 302 (742)
T TIGR03817 250 APVRRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGE---------------------------VDPDL 302 (742)
T ss_pred cccccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHh---------------------------hcccc
Confidence 00 00001122223333355789999999999999999877432110 01123
Q ss_pred cccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCC
Q 000114 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2158)
Q Consensus 1633 ~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR 1712 (2158)
+.++..||||+++++|+.+++.|++|++++||||+++++|||+|++.+|| ++..|.++.+|+||+|||||
T Consensus 303 ~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI----------~~~~P~s~~~y~qRiGRaGR 372 (742)
T TIGR03817 303 AERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVV----------IAGFPGTRASLWQQAGRAGR 372 (742)
T ss_pred ccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEE----------EeCCCCCHHHHHHhccccCC
Confidence 45688999999999999999999999999999999999999999999999 67788899999999999999
Q ss_pred CCCCCceEEEEEecCC
Q 000114 1713 PLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1713 ~g~d~~G~~iil~~~~ 1728 (2158)
.| ..|.+++++.+.
T Consensus 373 ~G--~~g~ai~v~~~~ 386 (742)
T TIGR03817 373 RG--QGALVVLVARDD 386 (742)
T ss_pred CC--CCcEEEEEeCCC
Confidence 87 678999888754
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=432.84 Aligned_cols=346 Identities=21% Similarity=0.272 Sum_probs=255.6
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.||+++...+ .||+.|||+|.++++.++.+ +|++++||||||||++|++|++..+...... ......++++|||+|
T Consensus 127 ~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g-~dviv~ApTGSGKTlayllPil~~l~~~~~~-~~~~~~~~~aLIL~P 204 (518)
T PLN00206 127 GLPPKLLLNLETAGYEFPTPIQMQAIPAALSG-RSLLVSADTGSGKTASFLVPIISRCCTIRSG-HPSEQRNPLAMVLTP 204 (518)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEEecCCCCccHHHHHHHHHHHHhhccc-cccccCCceEEEEeC
Confidence 4677777777 69999999999999999876 4699999999999999999999887643211 111225679999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeecccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
|++||.|+.+.++.+.+..++++..+.|+.....+. ..+++|+|+||+++ +.+.++. ..++++++|||||||+
T Consensus 205 TreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~---~~l~~v~~lViDEad~ 281 (518)
T PLN00206 205 TRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHD---IELDNVSVLVLDEVDC 281 (518)
T ss_pred CHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCC---ccchheeEEEeecHHH
Confidence 999999999999988777888888888877655432 34689999999998 5555442 5678899999999999
Q ss_pred ccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCCh-HHHHHHHhccccCceEEecCCccccc-ceeEEEeeccCC
Q 000114 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-EDVALFLRVNLEKGLFYFDNSYRPVP-LSQQYIGIQVKK 711 (2158)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~-~dv~~~l~~~~~~~~~~f~~~~rpv~-l~~~~~~~~~~~ 711 (2158)
+.+ ++.+.+..++.. .+..|++++|||+++. +.++.++...+ ..+......++.. +.+.++.+....
T Consensus 282 ml~~gf~~~i~~i~~~--------l~~~q~l~~SATl~~~v~~l~~~~~~~~--~~i~~~~~~~~~~~v~q~~~~~~~~~ 351 (518)
T PLN00206 282 MLERGFRDQVMQIFQA--------LSQPQVLLFSATVSPEVEKFASSLAKDI--ILISIGNPNRPNKAVKQLAIWVETKQ 351 (518)
T ss_pred HhhcchHHHHHHHHHh--------CCCCcEEEEEeeCCHHHHHHHHHhCCCC--EEEEeCCCCCCCcceeEEEEeccchh
Confidence 887 455554444332 2467999999999853 34444443221 1223333333332 222222222211
Q ss_pred hhHHHHHhhHHHHHHHHHHhC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhh
Q 000114 712 PLQRFQLMNDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2158)
Q Consensus 712 ~~~~~~~l~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 790 (2158)
+... +++.+..... .+++||||+++..+..++..|....
T Consensus 352 ---k~~~----l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~--------------------------------- 391 (518)
T PLN00206 352 ---KKQK----LFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVT--------------------------------- 391 (518)
T ss_pred ---HHHH----HHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhcc---------------------------------
Confidence 1111 1222222111 4689999999999999988776421
Q ss_pred hhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcc
Q 000114 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (2158)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GR 870 (2158)
...+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+ ||++. ++.+|+||+||
T Consensus 392 ---g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~----~d~P~------s~~~yihRiGR 458 (518)
T PLN00206 392 ---GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII----FDMPN------TIKEYIHQIGR 458 (518)
T ss_pred ---CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE----eCCCC------CHHHHHHhccc
Confidence 123567899999999999999999999999999999999999999999999 77665 88899999999
Q ss_pred cCCCCCCCccEEEEEcCCCcHHHHHH
Q 000114 871 AGRPQYDSYGEGIIITGHSELRYYLS 896 (2158)
Q Consensus 871 AGR~g~d~~G~~iil~~~~~~~~y~~ 896 (2158)
|||.| ..|.++++++.++...+..
T Consensus 459 aGR~g--~~G~ai~f~~~~~~~~~~~ 482 (518)
T PLN00206 459 ASRMG--EKGTAIVFVNEEDRNLFPE 482 (518)
T ss_pred cccCC--CCeEEEEEEchhHHHHHHH
Confidence 99987 6799999998877655443
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=428.91 Aligned_cols=345 Identities=19% Similarity=0.275 Sum_probs=257.6
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.|++++...+ .||..||++|.++++.++.+. |+|++||||||||++|++|+++.+...... ......+++|||+|
T Consensus 7 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~-dvlv~apTGsGKTla~~lpil~~l~~~~~~--~~~~~~~~aLil~P 83 (456)
T PRK10590 7 GLSPDILRAVAEQGYREPTPIQQQAIPAVLEGR-DLMASAQTGTGKTAGFTLPLLQHLITRQPH--AKGRRPVRALILTP 83 (456)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCCcHHHHHHHHHHHHhhhcccc--cccCCCceEEEEeC
Confidence 3567777766 799999999999999998875 599999999999999999999998654221 01123468999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
|++||.|+++.+..+....++++..++|+.+.+.+. ...++|+|+||+++..+..... ..++++++|||||||++
T Consensus 84 treLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~--~~l~~v~~lViDEah~l 161 (456)
T PRK10590 84 TRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNA--VKLDQVEILVLDEADRM 161 (456)
T ss_pred cHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCC--cccccceEEEeecHHHH
Confidence 999999999999998888899999999998766543 3478999999999844433322 45788999999999999
Q ss_pred cc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChh
Q 000114 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (2158)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn-~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (2158)
.+ .+...+..++.. .+...|++++|||+++ ..+++.++..++. .+...........+.+.+..+...
T Consensus 162 l~~~~~~~i~~il~~-------l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~-~i~~~~~~~~~~~i~~~~~~~~~~--- 230 (456)
T PRK10590 162 LDMGFIHDIRRVLAK-------LPAKRQNLLFSATFSDDIKALAEKLLHNPL-EIEVARRNTASEQVTQHVHFVDKK--- 230 (456)
T ss_pred hccccHHHHHHHHHh-------CCccCeEEEEeCCCcHHHHHHHHHHcCCCe-EEEEecccccccceeEEEEEcCHH---
Confidence 87 455555544433 3567789999999986 3455544433321 111111111222233333322211
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhc
Q 000114 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2158)
Q Consensus 714 ~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (2158)
.+... ...+.......++||||+++..+..++..|...+
T Consensus 231 ~k~~~-----l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g------------------------------------ 269 (456)
T PRK10590 231 RKREL-----LSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDG------------------------------------ 269 (456)
T ss_pred HHHHH-----HHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCC------------------------------------
Confidence 11111 1223333345789999999999999999887543
Q ss_pred cCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCC
Q 000114 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2158)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2158)
..+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |+.+. ++.+|+||+|||||
T Consensus 270 -~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~----~~~P~------~~~~yvqR~GRaGR 338 (456)
T PRK10590 270 -IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN----YELPN------VPEDYVHRIGRTGR 338 (456)
T ss_pred -CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE----eCCCC------CHHHhhhhcccccc
Confidence 23567799999999999999999999999999999999999999999999 77665 78899999999999
Q ss_pred CCCCCccEEEEEcCCCcHHHHH
Q 000114 874 PQYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y~ 895 (2158)
.| ..|.+++++...+...+.
T Consensus 339 ~g--~~G~ai~l~~~~d~~~~~ 358 (456)
T PRK10590 339 AA--ATGEALSLVCVDEHKLLR 358 (456)
T ss_pred CC--CCeeEEEEecHHHHHHHH
Confidence 87 669999998887755443
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=425.78 Aligned_cols=346 Identities=15% Similarity=0.206 Sum_probs=253.5
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++++...+ .||..|+|+|++|++.++.+. |++++||||||||++|++|+++.+.......+ ....++++||++||
T Consensus 15 l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~-dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~-~~~~~~~~lil~Pt 92 (423)
T PRK04837 15 LHPQVVEALEKKGFHNCTPIQALALPLTLAGR-DVAGQAQTGTGKTMAFLTATFHYLLSHPAPED-RKVNQPRALIMAPT 92 (423)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-cEEEECCCCchHHHHHHHHHHHHHHhcccccc-cccCCceEEEECCc
Confidence 566666666 799999999999999999875 59999999999999999999998875432111 11245799999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
++||.|+++.+..+....|+++..++|+.....+. ..+++|+|+||+++..+.+.. ...+.++++|||||||++.
T Consensus 93 reLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~--~~~l~~v~~lViDEad~l~ 170 (423)
T PRK04837 93 RELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN--HINLGAIQVVVLDEADRMF 170 (423)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcC--CcccccccEEEEecHHHHh
Confidence 99999999999998888899999999987655432 246799999999984333332 2457889999999999988
Q ss_pred c-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEE-ecCCc-ccccceeEEEeeccCChh
Q 000114 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNSY-RPVPLSQQYIGIQVKKPL 713 (2158)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~-f~~~~-rpv~l~~~~~~~~~~~~~ 713 (2158)
+ ++...+..++.++ . .....+.+++|||++. .+..+.......+.+. ..... ....+.+.++.. ...
T Consensus 171 ~~~f~~~i~~i~~~~----~-~~~~~~~~l~SAT~~~--~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~---~~~ 240 (423)
T PRK04837 171 DLGFIKDIRWLFRRM----P-PANQRLNMLFSATLSY--RVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYP---SNE 240 (423)
T ss_pred hcccHHHHHHHHHhC----C-CccceeEEEEeccCCH--HHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeC---CHH
Confidence 7 5656655554433 1 1134567899999984 3333332222222222 22111 112222222211 111
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhc
Q 000114 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2158)
Q Consensus 714 ~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (2158)
.+...+. .+.......++||||++++.|+.++..|...+
T Consensus 241 ~k~~~l~-----~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g------------------------------------ 279 (423)
T PRK04837 241 EKMRLLQ-----TLIEEEWPDRAIIFANTKHRCEEIWGHLAADG------------------------------------ 279 (423)
T ss_pred HHHHHHH-----HHHHhcCCCeEEEEECCHHHHHHHHHHHHhCC------------------------------------
Confidence 2222221 12222336799999999999999999887543
Q ss_pred cCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCC
Q 000114 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2158)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2158)
..+.++||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+ ||+|. +..+|+||+|||||
T Consensus 280 -~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~----~d~P~------s~~~yiqR~GR~gR 348 (423)
T PRK04837 280 -HRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFN----YDLPD------DCEDYVHRIGRTGR 348 (423)
T ss_pred -CcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEE----eCCCC------chhheEeccccccC
Confidence 34678899999999999999999999999999999999999999999999 66654 67789999999999
Q ss_pred CCCCCccEEEEEcCCCcHHHHH
Q 000114 874 PQYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y~ 895 (2158)
.| ..|.|+.+.++.+...+.
T Consensus 349 ~G--~~G~ai~~~~~~~~~~~~ 368 (423)
T PRK04837 349 AG--ASGHSISLACEEYALNLP 368 (423)
T ss_pred CC--CCeeEEEEeCHHHHHHHH
Confidence 88 679999999887654444
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=432.34 Aligned_cols=343 Identities=18% Similarity=0.251 Sum_probs=257.2
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.+|+++.+.+ .||++|+++|.+++|.++.+++ +|++||||||||++|++|++..+...... ....++.+|||+|
T Consensus 136 ~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~d-vI~~ApTGSGKTlaylLP~l~~i~~~~~~---~~~~gp~~LIL~P 211 (545)
T PTZ00110 136 SFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRD-MIGIAETGSGKTLAFLLPAIVHINAQPLL---RYGDGPIVLVLAP 211 (545)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCC-EEEEeCCCChHHHHHHHHHHHHHHhcccc---cCCCCcEEEEECC
Confidence 4688888777 6999999999999999998865 99999999999999999999887653211 1124578999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeecccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
|++||.|+.+.+.++....++++..++|+.....+. ...++|+|+||+++ +.+.+.. ..+.++++|||||||+
T Consensus 212 TreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~---~~l~~v~~lViDEAd~ 288 (545)
T PTZ00110 212 TRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNV---TNLRRVTYLVLDEADR 288 (545)
T ss_pred hHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCC---CChhhCcEEEeehHHh
Confidence 999999999999998887889999999987655432 34789999999998 5554432 4578899999999999
Q ss_pred ccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccccCceEEecCCcc---cccceeEEEeecc
Q 000114 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYR---PVPLSQQYIGIQV 709 (2158)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn-~~dv~~~l~~~~~~~~~~f~~~~r---pv~l~~~~~~~~~ 709 (2158)
+.+ .+.+.+..++.. ..+..|++++|||+|. .+.++..+... .++........ ...+.+.+..+..
T Consensus 289 mld~gf~~~i~~il~~-------~~~~~q~l~~SAT~p~~v~~l~~~l~~~--~~v~i~vg~~~l~~~~~i~q~~~~~~~ 359 (545)
T PTZ00110 289 MLDMGFEPQIRKIVSQ-------IRPDRQTLMWSATWPKEVQSLARDLCKE--EPVHVNVGSLDLTACHNIKQEVFVVEE 359 (545)
T ss_pred hhhcchHHHHHHHHHh-------CCCCCeEEEEEeCCCHHHHHHHHHHhcc--CCEEEEECCCccccCCCeeEEEEEEec
Confidence 987 566666655543 3567899999999984 23333333211 12222111111 1123333333322
Q ss_pred CChhHHHHHhhHHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcch
Q 000114 710 KKPLQRFQLMNDLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSND 788 (2158)
Q Consensus 710 ~~~~~~~~~l~~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 788 (2158)
. .+...+..+ +.... .+.++||||++++.|..++..|...+.
T Consensus 360 ~---~k~~~L~~l----l~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~------------------------------ 402 (545)
T PTZ00110 360 H---EKRGKLKML----LQRIMRDGDKILIFVETKKGADFLTKELRLDGW------------------------------ 402 (545)
T ss_pred h---hHHHHHHHH----HHHhcccCCeEEEEecChHHHHHHHHHHHHcCC------------------------------
Confidence 2 122222222 22222 467999999999999999998875432
Q ss_pred hhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhh
Q 000114 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (2158)
Q Consensus 789 l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~ 868 (2158)
.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||.+. ++.+|+||+
T Consensus 403 -------~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~----~d~P~------s~~~yvqRi 465 (545)
T PTZ00110 403 -------PALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVIN----FDFPN------QIEDYVHRI 465 (545)
T ss_pred -------cEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEE----eCCCC------CHHHHHHHh
Confidence 2456799999999999999999999999999999999999999999999 77765 788999999
Q ss_pred cccCCCCCCCccEEEEEcCCCcHHHHH
Q 000114 869 GRAGRPQYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (2158)
|||||.| ..|.|+++++..+.....
T Consensus 466 GRtGR~G--~~G~ai~~~~~~~~~~~~ 490 (545)
T PTZ00110 466 GRTGRAG--AKGASYTFLTPDKYRLAR 490 (545)
T ss_pred cccccCC--CCceEEEEECcchHHHHH
Confidence 9999987 679999999987755443
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=427.65 Aligned_cols=336 Identities=21% Similarity=0.326 Sum_probs=257.0
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++++...+ .||++|||+|.+|++.++.++ |++++||||||||++|++|+++.+.... ...+++|++||
T Consensus 11 l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~-dvi~~a~TGsGKT~a~~lpil~~l~~~~--------~~~~~lil~Pt 81 (460)
T PRK11776 11 LPPALLANLNELGYTEMTPIQAQSLPAILAGK-DVIAQAKTGSGKTAAFGLGLLQKLDVKR--------FRVQALVLCPT 81 (460)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-CEEEECCCCCcHHHHHHHHHHHHhhhcc--------CCceEEEEeCC
Confidence 566666665 689999999999999998875 5999999999999999999999885432 24589999999
Q ss_pred HHHHHHHHHHHHhhcccC-CcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccc
Q 000114 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
++||.|+.+.++.+.... ++++..++|+.+...+. ...++|+|+||++|..+.++.. ..++++++||+||||++
T Consensus 82 reLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~--~~l~~l~~lViDEad~~ 159 (460)
T PRK11776 82 RELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGT--LDLDALNTLVLDEADRM 159 (460)
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCC--ccHHHCCEEEEECHHHH
Confidence 999999999998876544 78999999998765442 3578999999999844444332 45789999999999998
Q ss_pred cc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCce-EEecCCcccccceeEEEeeccCChh
Q 000114 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGL-FYFDNSYRPVPLSQQYIGIQVKKPL 713 (2158)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~-~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (2158)
.+ .+...++.++.. .+...|++++|||+|+ .+..+.......+. +..........+.+.++.+....
T Consensus 160 l~~g~~~~l~~i~~~-------~~~~~q~ll~SAT~~~--~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~-- 228 (460)
T PRK11776 160 LDMGFQDAIDAIIRQ-------APARRQTLLFSATYPE--GIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDE-- 228 (460)
T ss_pred hCcCcHHHHHHHHHh-------CCcccEEEEEEecCcH--HHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHH--
Confidence 87 567776666554 3567899999999984 34443332222222 22333333333555555443322
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhc
Q 000114 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2158)
Q Consensus 714 ~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (2158)
+...+.. ++......++||||+|++.+..++..|...+
T Consensus 229 -k~~~l~~-----ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~------------------------------------ 266 (460)
T PRK11776 229 -RLPALQR-----LLLHHQPESCVVFCNTKKECQEVADALNAQG------------------------------------ 266 (460)
T ss_pred -HHHHHHH-----HHHhcCCCceEEEECCHHHHHHHHHHHHhCC------------------------------------
Confidence 2322222 2233446789999999999999999987643
Q ss_pred cCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCC
Q 000114 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2158)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2158)
..+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |+.+. +..+|+||+|||||
T Consensus 267 -~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~----~d~p~------~~~~yiqR~GRtGR 335 (460)
T PRK11776 267 -FSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVIN----YELAR------DPEVHVHRIGRTGR 335 (460)
T ss_pred -CcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEE----ecCCC------CHhHhhhhcccccC
Confidence 24677899999999999999999999999999999999999999999999 55443 56689999999999
Q ss_pred CCCCCccEEEEEcCCCcHHHH
Q 000114 874 PQYDSYGEGIIITGHSELRYY 894 (2158)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y 894 (2158)
.| ..|.|+.+++..+...+
T Consensus 336 ~g--~~G~ai~l~~~~e~~~~ 354 (460)
T PRK11776 336 AG--SKGLALSLVAPEEMQRA 354 (460)
T ss_pred CC--CcceEEEEEchhHHHHH
Confidence 87 66999999988775543
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=430.02 Aligned_cols=345 Identities=15% Similarity=0.219 Sum_probs=254.2
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++++...+ .||..|||+|.++|+.++.+.+ ++++||||||||++|++|+++.+....... ......+++|||+||
T Consensus 16 l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~D-vi~~ApTGSGKTlafllpil~~l~~~~~~~-~~~~~~~raLIl~PT 93 (572)
T PRK04537 16 LHPALLAGLESAGFTRCTPIQALTLPVALPGGD-VAGQAQTGTGKTLAFLVAVMNRLLSRPALA-DRKPEDPRALILAPT 93 (572)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCC-EEEEcCCCCcHHHHHHHHHHHHHHhccccc-ccccCCceEEEEeCc
Confidence 566666666 7999999999999999998755 999999999999999999999886532110 011135799999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
++||.|+++.+.++....++++..++|+.....+. ...++|+|+||++|..+.+... ...+..+++|||||||++.
T Consensus 94 reLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~-~~~l~~v~~lViDEAh~ll 172 (572)
T PRK04537 94 RELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHK-VVSLHACEICVLDEADRMF 172 (572)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhcc-ccchhheeeeEecCHHHHh
Confidence 99999999999998888899999999988765432 3467999999999843333321 1346789999999999988
Q ss_pred c-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCc-eEEec-CCcccccceeEEEeeccCChh
Q 000114 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG-LFYFD-NSYRPVPLSQQYIGIQVKKPL 713 (2158)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~-~~~f~-~~~rpv~l~~~~~~~~~~~~~ 713 (2158)
+ .+...++.++.++. .....|++++|||+++ .+..+.......+ .+.+. .......+.+.++... ..
T Consensus 173 d~gf~~~i~~il~~lp-----~~~~~q~ll~SATl~~--~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~---~~ 242 (572)
T PRK04537 173 DLGFIKDIRFLLRRMP-----ERGTRQTLLFSATLSH--RVLELAYEHMNEPEKLVVETETITAARVRQRIYFPA---DE 242 (572)
T ss_pred hcchHHHHHHHHHhcc-----cccCceEEEEeCCccH--HHHHHHHHHhcCCcEEEeccccccccceeEEEEecC---HH
Confidence 7 56666666655441 1236789999999985 2333322221111 12222 2222223333333221 11
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhc
Q 000114 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2158)
Q Consensus 714 ~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (2158)
.+...+. .+.....+.++||||+|+..++.++..|...+
T Consensus 243 ~k~~~L~-----~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g------------------------------------ 281 (572)
T PRK04537 243 EKQTLLL-----GLLSRSEGARTMVFVNTKAFVERVARTLERHG------------------------------------ 281 (572)
T ss_pred HHHHHHH-----HHHhcccCCcEEEEeCCHHHHHHHHHHHHHcC------------------------------------
Confidence 2222111 22233346799999999999999999887643
Q ss_pred cCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCC
Q 000114 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2158)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2158)
+.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||.+. +..+|+||+|||||
T Consensus 282 -~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIn----yd~P~------s~~~yvqRiGRaGR 350 (572)
T PRK04537 282 -YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYN----YDLPF------DAEDYVHRIGRTAR 350 (572)
T ss_pred -CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEE----cCCCC------CHHHHhhhhccccc
Confidence 24778899999999999999999999999999999999999999999999 55553 77899999999999
Q ss_pred CCCCCccEEEEEcCCCcHHH
Q 000114 874 PQYDSYGEGIIITGHSELRY 893 (2158)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~ 893 (2158)
.| ..|.|++++...+...
T Consensus 351 ~G--~~G~ai~~~~~~~~~~ 368 (572)
T PRK04537 351 LG--EEGDAISFACERYAMS 368 (572)
T ss_pred CC--CCceEEEEecHHHHHH
Confidence 88 5699999988765443
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=427.22 Aligned_cols=347 Identities=20% Similarity=0.283 Sum_probs=254.0
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhh-----cCCCceEEEEEccc
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-----SETGVMRAVYIAPL 1399 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~-----~~~~~~~~v~IaP~ 1399 (2158)
.|+......+.. ||..|||+|.++++.++.+ +|++++||||||||++|++|++.++... ....++++|||+||
T Consensus 127 ~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g-~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PT 205 (518)
T PLN00206 127 GLPPKLLLNLETAGYEFPTPIQMQAIPAALSG-RSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPT 205 (518)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCC
Confidence 466677777766 7999999999999999975 5699999999999999999999887532 11234599999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccc
Q 000114 1400 EALAKERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476 (2158)
Q Consensus 1400 raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l 1476 (2158)
++||.|+++.++ .+....++++..+.|+..... +....++|+|+||+++..++.+. ...++++++||+||||++
T Consensus 206 reLa~Qi~~~~~-~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~--~~~l~~v~~lViDEad~m 282 (518)
T PLN00206 206 RELCVQVEDQAK-VLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH--DIELDNVSVLVLDEVDCM 282 (518)
T ss_pred HHHHHHHHHHHH-HHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC--CccchheeEEEeecHHHH
Confidence 999999998887 666666777777777654332 23345699999999998887663 456899999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccc-cEEEEecccccchHH
Q 000114 1477 GGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVP-LEIHIQGVDITNFEA 1554 (2158)
Q Consensus 1477 ~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~-l~~~i~~~~~~~~~~ 1554 (2158)
.+.+ ++ ..+..+...+ ++.|++++|||+++ .+.++.++..... .+......++.. +...........
T Consensus 283 l~~g---f~---~~i~~i~~~l-~~~q~l~~SATl~~~v~~l~~~~~~~~~-~i~~~~~~~~~~~v~q~~~~~~~~~--- 351 (518)
T PLN00206 283 LERG---FR---DQVMQIFQAL-SQPQVLLFSATVSPEVEKFASSLAKDII-LISIGNPNRPNKAVKQLAIWVETKQ--- 351 (518)
T ss_pred hhcc---hH---HHHHHHHHhC-CCCcEEEEEeeCCHHHHHHHHHhCCCCE-EEEeCCCCCCCcceeEEEEeccchh---
Confidence 8654 22 2233333333 36799999999987 4567777654432 223322222221 111111111111
Q ss_pred HHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcc
Q 000114 1555 RMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (2158)
Q Consensus 1555 ~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (2158)
.. ...+..+........++||||+|+..|+.++..|.. ..+.
T Consensus 352 k~----~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~----------------------------------~~g~ 393 (518)
T PLN00206 352 KK----QKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITV----------------------------------VTGL 393 (518)
T ss_pred HH----HHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhh----------------------------------ccCc
Confidence 00 111222222212346899999999999888865521 1234
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCC
Q 000114 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2158)
Q Consensus 1635 gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g 1714 (2158)
.+..+||+|+..+|..+++.|++|+++|||||++++||||+|++.+|| +++.|.++.+|+||+|||||.|
T Consensus 394 ~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI----------~~d~P~s~~~yihRiGRaGR~g 463 (518)
T PLN00206 394 KALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVI----------IFDMPNTIKEYIHQIGRASRMG 463 (518)
T ss_pred ceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEE----------EeCCCCCHHHHHHhccccccCC
Confidence 588999999999999999999999999999999999999999999999 6777889999999999999987
Q ss_pred CCCceEEEEEecCChHHHHHHHh
Q 000114 1715 LDNSGKCVILCHAPRKEYYKKFL 1737 (2158)
Q Consensus 1715 ~d~~G~~iil~~~~~~~~~~k~l 1737 (2158)
..|.|++|+...+...+..+.
T Consensus 464 --~~G~ai~f~~~~~~~~~~~l~ 484 (518)
T PLN00206 464 --EKGTAIVFVNEEDRNLFPELV 484 (518)
T ss_pred --CCeEEEEEEchhHHHHHHHHH
Confidence 689999999887665555443
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=405.81 Aligned_cols=337 Identities=20% Similarity=0.278 Sum_probs=257.5
Q ss_pred hhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhh----cCCCceEEEEEcccHHHH
Q 000114 1329 NPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA----SETGVMRAVYIAPLEALA 1403 (2158)
Q Consensus 1329 ~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~----~~~~~~~~v~IaP~raLa 1403 (2158)
.+....+.. ||..|+|||.+.++.++.+.+ ++..|.||||||++|++|++.++... ..+++|++++++||||||
T Consensus 100 ~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD-~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA 178 (519)
T KOG0331|consen 100 EELMKALKEQGFEKPTPIQAQGWPIALSGRD-LVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELA 178 (519)
T ss_pred HHHHHHHHhcCCCCCchhhhcccceeccCCc-eEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHH
Confidence 344555554 799999999999999999776 99999999999999999999999862 234457999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcCCcchh--hhcccC-CcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCC
Q 000114 1404 KERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEK-GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (2158)
Q Consensus 1404 ~q~~~~~~~~f~~~~g~~v~~ltG~~~~~--~~~l~~-~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~ 1480 (2158)
.|+.+.+. .|+..++++..+++|+.+.. .+.+++ .+|+|+||+++.+++.. ....++++.++|+||||.|++.+
T Consensus 179 ~QV~~~~~-~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~--g~~~l~~v~ylVLDEADrMldmG 255 (519)
T KOG0331|consen 179 VQVQAEAR-EFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE--GSLNLSRVTYLVLDEADRMLDMG 255 (519)
T ss_pred HHHHHHHH-HHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc--CCccccceeEEEeccHHhhhccc
Confidence 99999999 78877788889999988764 344444 59999999999999887 56678999999999999999877
Q ss_pred CChHHHHHHHHHHHHhhcCC-CceEEEeccCCCC-hHHHHH-HhccCCCceEecCCC--CcccccEEEEecccccchHHH
Q 000114 1481 GPVLEVIVSRMRYIASQVEN-KIRIVALSTSLAN-AKDLGE-WIGATSHGLFNFPPG--VRPVPLEIHIQGVDITNFEAR 1555 (2158)
Q Consensus 1481 g~~~e~~isrl~~i~~~~~~-~~riV~lSATl~n-~~dl~~-wl~~~~~~i~~f~~~--~rpv~l~~~i~~~~~~~~~~~ 1555 (2158)
+-..++.|..+++. ..|.++.|||.|. .+.++. +++ ....+...... .....+...+..++ ...
T Consensus 256 ------Fe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~-~~~~i~ig~~~~~~a~~~i~qive~~~----~~~ 324 (519)
T KOG0331|consen 256 ------FEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLN-NPIQINVGNKKELKANHNIRQIVEVCD----ETA 324 (519)
T ss_pred ------cHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhc-CceEEEecchhhhhhhcchhhhhhhcC----HHH
Confidence 66677777777744 4479999999986 455554 343 32211111000 00000111111111 000
Q ss_pred HHhcChHHHHHHHHhH--hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhc
Q 000114 1556 MQAMTKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (2158)
Q Consensus 1556 ~~~~~k~~~~~i~~~~--~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (2158)
... ....++... ...+++||||+|++.|..++..+.. ..
T Consensus 325 K~~----~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~-----------------------------------~~ 365 (519)
T KOG0331|consen 325 KLR----KLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRR-----------------------------------KG 365 (519)
T ss_pred HHH----HHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHh-----------------------------------cC
Confidence 111 111222222 3567899999999999999966622 23
Q ss_pred ccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCC
Q 000114 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRP 1713 (2158)
Q Consensus 1634 ~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~ 1713 (2158)
+++..+||+.++.+|..+++.|++|+..|||||++++||+|+|++.+|| |++.|-++.+|+||+||+||.
T Consensus 366 ~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVI----------nydfP~~vEdYVHRiGRTGRa 435 (519)
T KOG0331|consen 366 WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVI----------NYDFPNNVEDYVHRIGRTGRA 435 (519)
T ss_pred cceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEE----------eCCCCCCHHHHHhhcCccccC
Confidence 5688999999999999999999999999999999999999999999999 788899999999999999998
Q ss_pred CCCCceEEEEEecCChHH
Q 000114 1714 LLDNSGKCVILCHAPRKE 1731 (2158)
Q Consensus 1714 g~d~~G~~iil~~~~~~~ 1731 (2158)
| ..|.++.|.+.....
T Consensus 436 ~--~~G~A~tfft~~~~~ 451 (519)
T KOG0331|consen 436 G--KKGTAITFFTSDNAK 451 (519)
T ss_pred C--CCceEEEEEeHHHHH
Confidence 6 899999988876543
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=444.55 Aligned_cols=400 Identities=20% Similarity=0.285 Sum_probs=281.3
Q ss_pred EEccCCchhHHHHHHHHHHHHHhhc--------CCCceEEEEEcccHHHHHHHHHHHHHH----------hcC-CCCcEE
Q 000114 1362 VAAPTGSGKTICSEFAILRNHQKAS--------ETGVMRAVYIAPLEALAKERYRDWEIK----------FGQ-GLGMRV 1422 (2158)
Q Consensus 1362 i~ApTGSGKTl~a~l~il~~l~~~~--------~~~~~~~v~IaP~raLa~q~~~~~~~~----------f~~-~~g~~v 1422 (2158)
|+||||||||+||+||++..+.... ..+++++|||+|+|+|+.|+++.++.. ++. ..+++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5899999999999999998887531 112469999999999999999998742 222 247899
Q ss_pred EEEcCCcchhhh--cc-cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCCChHHHHHHHHHHHHhhc
Q 000114 1423 VELTGETAMDLK--LL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQV 1498 (2158)
Q Consensus 1423 ~~ltG~~~~~~~--~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g~~~e~~isrl~~i~~~~ 1498 (2158)
...+||++.+.+ .+ +.++|+|+|||+|..++.+ +.+..++++++|||||+|.+.+ .+|..++..++|+..+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLts-k~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~--- 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTS-RARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL--- 156 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhh-hhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC---
Confidence 999999987653 33 3579999999999988654 2355789999999999999887 58999999999999874
Q ss_pred CCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchH------------HHHHhcChHHHHH
Q 000114 1499 ENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFE------------ARMQAMTKPTFTA 1566 (2158)
Q Consensus 1499 ~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~------------~~~~~~~k~~~~~ 1566 (2158)
+.+.|+|+||||++|.+++++||+......+...+..++.++.+.+...+..... .+...+.......
T Consensus 157 ~~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 157 HTSAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred CCCCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 4578999999999999999999987533322335666777776555432221110 0011122222334
Q ss_pred HHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHh---cccEEEecCCC
Q 000114 1567 IVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL---RHGVGYLHEGL 1643 (2158)
Q Consensus 1567 i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l---~~gv~~~H~~l 1643 (2158)
+...+..++++|||||||+.|+.++..|.......... . ..............+....... ...+..|||+|
T Consensus 237 il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsL 311 (1490)
T PRK09751 237 ILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQR-S----PSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSV 311 (1490)
T ss_pred HHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccc-c----ccccchhhhhhhccccchhccccccceeeeeccccC
Confidence 44444567899999999999999999986543210000 0 0000000000011111111111 12367999999
Q ss_pred CHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEE
Q 000114 1644 NKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2158)
Q Consensus 1644 ~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~ii 1723 (2158)
++++|..+++.|++|++++||||+++++|||++++.+|| ++..|+++.+|+||+|||||. .+..+.+++
T Consensus 312 SkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVI----------q~gsP~sVas~LQRiGRAGR~-~gg~s~gli 380 (1490)
T PRK09751 312 SKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVI----------QVATPLSVASGLQRIGRAGHQ-VGGVSKGLF 380 (1490)
T ss_pred CHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEE----------EeCCCCCHHHHHHHhCCCCCC-CCCccEEEE
Confidence 999999999999999999999999999999999999999 567789999999999999997 356777776
Q ss_pred EecCChHHHH------HHHhh-CCCccccc--hhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhh
Q 000114 1724 LCHAPRKEYY------KKFLY-DAFPVESH--LHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRL 1783 (2158)
Q Consensus 1724 l~~~~~~~~~------~k~l~-~~~piES~--L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl 1783 (2158)
+..+ ..++. +.++. ..+++... -...|..|+.+.++.+.+ +..+..+.++.+|.|+.|
T Consensus 381 ~p~~-r~dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~~~~-~~d~l~~~vrra~pf~~L 447 (1490)
T PRK09751 381 FPRT-RRDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMDAL-QVDEWYSRVRRAAPWKDL 447 (1490)
T ss_pred EeCc-HHHHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhcCCC-CHHHHHHHhhccCCcccC
Confidence 5554 33332 23333 23333332 235678888888876544 467878888888877643
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=446.02 Aligned_cols=401 Identities=20% Similarity=0.260 Sum_probs=265.9
Q ss_pred EEccCCCchHHHHHHHHHHHHHhccCCC--CCCCCCCcEEEEEcccHHHHHHHHHHHHhhcc------------cCCcEE
Q 000114 516 LCAPTGAGKTNVAVLTILQQLALNRNDD--GSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ------------MYDVKV 581 (2158)
Q Consensus 516 v~APTGsGKT~~a~l~il~~l~~~~~~~--~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~------------~~gi~v 581 (2158)
|+||||||||++|++|++..+....... +.-..++.++|||+|+|||+.|+.++++..+. ..+++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5899999999999999999887542110 00112457999999999999999999875221 247899
Q ss_pred EEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CChhhHHHHHHHHHHHHhhc
Q 000114 582 RELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETT 657 (2158)
Q Consensus 582 ~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~ 657 (2158)
...+||++...+. ...++|+|||||+|+.+.... ....++++++|||||+|.+.+ .||..++.++.|+... .
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk-~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l---~ 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSR-ARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDAL---L 156 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhh-hhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHh---C
Confidence 9999999877643 247899999999996654332 235789999999999999987 5999999999998764 3
Q ss_pred cccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChh-------------HHHHHhhHHHH
Q 000114 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL-------------QRFQLMNDLCY 724 (2158)
Q Consensus 658 ~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~-------------~~~~~l~~~~~ 724 (2158)
+.+.|+|++|||++|.+++++|+....... ++..+..++.++...+. ....... .+...+...++
T Consensus 157 ~~~~QrIgLSATI~n~eevA~~L~g~~pv~-Iv~~~~~r~~~l~v~vp-~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~ 234 (1490)
T PRK09751 157 HTSAQRIGLSATVRSASDVAAFLGGDRPVT-VVNPPAMRHPQIRIVVP-VANMDDVSSVASGTGEDSHAGREGSIWPYIE 234 (1490)
T ss_pred CCCCeEEEEEeeCCCHHHHHHHhcCCCCEE-EECCCCCcccceEEEEe-cCchhhccccccccccccchhhhhhhhHHHH
Confidence 457899999999999999999997642111 22233445555543221 1110000 00111111222
Q ss_pred HHHHHH-hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhh---hccCCeEEe
Q 000114 725 EKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD---LLPYGFAIH 800 (2158)
Q Consensus 725 ~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~---ll~~gv~~h 800 (2158)
..+... ...+++|||||||+.|+.++..|.+....... ....... .........+..... .....+.+|
T Consensus 235 ~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ia~~H 307 (1490)
T PRK09751 235 TGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQ------RSPSIAV-DAAHFESTSGATSNRVQSSDVFIARSH 307 (1490)
T ss_pred HHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhcc------ccccccc-hhhhhhhccccchhccccccceeeeec
Confidence 223322 23679999999999999999999875321000 0000000 000000001111111 112347899
Q ss_pred cCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCcc
Q 000114 801 HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880 (2158)
Q Consensus 801 Hagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G 880 (2158)
||+|++++|..+++.|++|.+++||||+++++|||+|++++||+ |+.|. |+.+|+||+|||||. .+..+
T Consensus 308 HGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq----~gsP~------sVas~LQRiGRAGR~-~gg~s 376 (1490)
T PRK09751 308 HGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ----VATPL------SVASGLQRIGRAGHQ-VGGVS 376 (1490)
T ss_pred cccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEE----eCCCC------CHHHHHHHhCCCCCC-CCCcc
Confidence 99999999999999999999999999999999999999999999 55543 888999999999996 56677
Q ss_pred EEEEEcCCCc-HHH----HHHhhcCC-Ccc--cchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHH
Q 000114 881 EGIIITGHSE-LRY----YLSLMNQQ-LPI--ESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLY 941 (2158)
Q Consensus 881 ~~iil~~~~~-~~~----y~~ll~~~-~pi--eS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~ 941 (2158)
.++++..+.. .-. ...++... .|+ ...-...|..|+.+.++.+. -+.++..+.++.+|.|
T Consensus 377 ~gli~p~~r~dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~~~-~~~d~l~~~vrra~pf 444 (1490)
T PRK09751 377 KGLFFPRTRRDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMDA-LQVDEWYSRVRRAAPW 444 (1490)
T ss_pred EEEEEeCcHHHHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhcCC-CCHHHHHHHhhccCCc
Confidence 8887666532 111 12233222 122 22233467778877777544 3456666655555443
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=420.29 Aligned_cols=342 Identities=18% Similarity=0.277 Sum_probs=258.3
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcC----CCceEEEEEcccHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE----TGVMRAVYIAPLEA 1401 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~----~~~~~~v~IaP~ra 1401 (2158)
|+....+.+.. ||..|+|+|.++++.++++. |++++||||||||++|++|++..+..... ...+++|||+||++
T Consensus 8 l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~-dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~Ptre 86 (456)
T PRK10590 8 LSPDILRAVAEQGYREPTPIQQQAIPAVLEGR-DLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRE 86 (456)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHH
Confidence 55566677766 79999999999999999855 59999999999999999999999865321 12348999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh---cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC
Q 000114 1402 LAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2158)
Q Consensus 1402 La~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~ 1478 (2158)
||.|+++.++ .+....++++..++|+.+.+.+ ....++|+|+||+++..+... ....++++++|||||||++.+
T Consensus 87 La~Qi~~~~~-~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~--~~~~l~~v~~lViDEah~ll~ 163 (456)
T PRK10590 87 LAAQIGENVR-DYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ--NAVKLDQVEILVLDEADRMLD 163 (456)
T ss_pred HHHHHHHHHH-HHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc--CCcccccceEEEeecHHHHhc
Confidence 9999999998 4555568888889998776532 334669999999999887765 334688999999999999987
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHH
Q 000114 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (2158)
Q Consensus 1479 ~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~ 1557 (2158)
.. +...++.+...++...|++++|||+++ ..+++.++......+...........+...+...+... .
T Consensus 164 ~~------~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~---k-- 232 (456)
T PRK10590 164 MG------FIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKR---K-- 232 (456)
T ss_pred cc------cHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHH---H--
Confidence 54 344555555666778899999999987 46777776555433332222222222222222111110 0
Q ss_pred hcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEE
Q 000114 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2158)
Q Consensus 1558 ~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~ 1637 (2158)
......+... ....++||||+++..|..++..|.. .+..+.
T Consensus 233 ---~~~l~~l~~~-~~~~~~lVF~~t~~~~~~l~~~L~~-----------------------------------~g~~~~ 273 (456)
T PRK10590 233 ---RELLSQMIGK-GNWQQVLVFTRTKHGANHLAEQLNK-----------------------------------DGIRSA 273 (456)
T ss_pred ---HHHHHHHHHc-CCCCcEEEEcCcHHHHHHHHHHHHH-----------------------------------CCCCEE
Confidence 1111222222 3456899999999999988866622 234588
Q ss_pred EecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCC
Q 000114 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2158)
Q Consensus 1638 ~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~ 1717 (2158)
.+||+|++.+|..+++.|++|+++|||||+++++|||+|++.+|| |+..|.+..+|+||+|||||.| .
T Consensus 274 ~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI----------~~~~P~~~~~yvqR~GRaGR~g--~ 341 (456)
T PRK10590 274 AIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVV----------NYELPNVPEDYVHRIGRTGRAA--A 341 (456)
T ss_pred EEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEE----------EeCCCCCHHHhhhhccccccCC--C
Confidence 999999999999999999999999999999999999999999999 6778889999999999999987 6
Q ss_pred ceEEEEEecCChHHHHH
Q 000114 1718 SGKCVILCHAPRKEYYK 1734 (2158)
Q Consensus 1718 ~G~~iil~~~~~~~~~~ 1734 (2158)
.|.|++++...+...++
T Consensus 342 ~G~ai~l~~~~d~~~~~ 358 (456)
T PRK10590 342 TGEALSLVCVDEHKLLR 358 (456)
T ss_pred CeeEEEEecHHHHHHHH
Confidence 78888888776544443
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=422.70 Aligned_cols=340 Identities=22% Similarity=0.346 Sum_probs=267.3
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++++.+.+ .||..|+|||.+++|.++.+.+ ++++|+||||||++|.+|+++.+...... ....+|+++||
T Consensus 36 l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~D-vi~~A~TGsGKT~Af~lP~l~~l~~~~~~------~~~~aLil~PT 108 (513)
T COG0513 36 LSPELLQALKDLGFEEPTPIQLAAIPLILAGRD-VLGQAQTGTGKTAAFLLPLLQKILKSVER------KYVSALILAPT 108 (513)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHHhccccc------CCCceEEECCC
Confidence 445555555 6999999999999999999955 99999999999999999999997742110 11119999999
Q ss_pred HHHHHHHHHHHHhhcccC-CcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeecccc
Q 000114 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
|+||.|+++.+..+.... ++++..++|+.+...+. ..+++|+|+||+++ |.+.+.. ..++.++++|+||||.
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~---l~l~~v~~lVlDEADr 185 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGK---LDLSGVETLVLDEADR 185 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCC---cchhhcCEEEeccHhh
Confidence 999999999999988887 79999999998876653 23599999999997 7777663 5788999999999999
Q ss_pred ccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecC--Cc--ccccceeEEEeecc
Q 000114 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDN--SY--RPVPLSQQYIGIQV 709 (2158)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~--~~--rpv~l~~~~~~~~~ 709 (2158)
|++ ++.+.++.|+..+ +.+.|++++|||+|. .+..+.......+...... .. -+..+.+.++.+..
T Consensus 186 mLd~Gf~~~i~~I~~~~-------p~~~qtllfSAT~~~--~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~ 256 (513)
T COG0513 186 MLDMGFIDDIEKILKAL-------PPDRQTLLFSATMPD--DIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVES 256 (513)
T ss_pred hhcCCCHHHHHHHHHhC-------CcccEEEEEecCCCH--HHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCC
Confidence 998 6888888877654 458999999999996 5777666554444322221 21 23455666665544
Q ss_pred CChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchh
Q 000114 710 KKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (2158)
Q Consensus 710 ~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 789 (2158)
.. .++..+. .+.......++||||+|+..+..++..|...++.
T Consensus 257 ~~--~k~~~L~-----~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~------------------------------ 299 (513)
T COG0513 257 EE--EKLELLL-----KLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFK------------------------------ 299 (513)
T ss_pred HH--HHHHHHH-----HHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCe------------------------------
Confidence 32 2333222 2333344568999999999999999999886643
Q ss_pred hhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhc
Q 000114 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (2158)
Q Consensus 790 ~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~G 869 (2158)
+...||+|++++|..+++.|++|..+|||||++++||+|+|++.+||| ||.|. +..+|+||+|
T Consensus 300 -------~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vin----yD~p~------~~e~yvHRiG 362 (513)
T COG0513 300 -------VAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVIN----YDLPL------DPEDYVHRIG 362 (513)
T ss_pred -------EEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEE----ccCCC------CHHHheeccC
Confidence 455699999999999999999999999999999999999999999999 66554 6678999999
Q ss_pred ccCCCCCCCccEEEEEcCCC-cHHHHHH
Q 000114 870 RAGRPQYDSYGEGIIITGHS-ELRYYLS 896 (2158)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~-~~~~y~~ 896 (2158)
|+||.| ..|.++.++.+. +...+.+
T Consensus 363 RTgRaG--~~G~ai~fv~~~~e~~~l~~ 388 (513)
T COG0513 363 RTGRAG--RKGVAISFVTEEEEVKKLKR 388 (513)
T ss_pred ccccCC--CCCeEEEEeCcHHHHHHHHH
Confidence 999998 779999999875 5544443
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=418.58 Aligned_cols=342 Identities=23% Similarity=0.299 Sum_probs=257.5
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.|++.+...+ .||.+|+++|.++++.++.+. +++++||||+|||++|++|+++.+...... .....++||++|
T Consensus 7 ~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~-d~l~~apTGsGKT~~~~lp~l~~l~~~~~~----~~~~~~~lil~P 81 (434)
T PRK11192 7 ELDESLLEALQDKGYTRPTAIQAEAIPPALDGR-DVLGSAPTGTGKTAAFLLPALQHLLDFPRR----KSGPPRILILTP 81 (434)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHHhhcccc----CCCCceEEEECC
Confidence 3566666776 799999999999999999875 599999999999999999999998754321 113468999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeecccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
|++||.|+++.+..+....++++..++|+.....+. ...++|+|+||+++ +.+.+.. ..++++++|||||||+
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~---~~~~~v~~lViDEah~ 158 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEEN---FDCRAVETLILDEADR 158 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC---cCcccCCEEEEECHHH
Confidence 999999999999998888899999999998765543 34679999999997 4444332 3467899999999999
Q ss_pred ccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCC--hHHHHHHHhccccCceEEecCCcccc-cceeEEEeeccC
Q 000114 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPV-PLSQQYIGIQVK 710 (2158)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn--~~dv~~~l~~~~~~~~~~f~~~~rpv-~l~~~~~~~~~~ 710 (2158)
+.+ .++..++.+...+ ....|++++|||++. ..++..++...+. .+......+.. .+.+.+... .
T Consensus 159 ~l~~~~~~~~~~i~~~~-------~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~i~~~~~~~--~ 227 (434)
T PRK11192 159 MLDMGFAQDIETIAAET-------RWRKQTLLFSATLEGDAVQDFAERLLNDPV--EVEAEPSRRERKKIHQWYYRA--D 227 (434)
T ss_pred HhCCCcHHHHHHHHHhC-------ccccEEEEEEeecCHHHHHHHHHHHccCCE--EEEecCCcccccCceEEEEEe--C
Confidence 987 5777776665433 456789999999974 4455555543221 11222221111 122222211 1
Q ss_pred ChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhh
Q 000114 711 KPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2158)
Q Consensus 711 ~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 790 (2158)
....+...+ ..+.......++||||+++..+..++..|...+
T Consensus 228 ~~~~k~~~l-----~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~--------------------------------- 269 (434)
T PRK11192 228 DLEHKTALL-----CHLLKQPEVTRSIVFVRTRERVHELAGWLRKAG--------------------------------- 269 (434)
T ss_pred CHHHHHHHH-----HHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCC---------------------------------
Confidence 111222221 223333346799999999999999999987632
Q ss_pred hhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcc
Q 000114 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (2158)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GR 870 (2158)
..+.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ |+.+. |...|+||+||
T Consensus 270 ----~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~----~d~p~------s~~~yiqr~GR 335 (434)
T PRK11192 270 ----INCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN----FDMPR------SADTYLHRIGR 335 (434)
T ss_pred ----CCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE----ECCCC------CHHHHhhcccc
Confidence 23677899999999999999999999999999999999999999999999 66654 77899999999
Q ss_pred cCCCCCCCccEEEEEcCCCcHHHHH
Q 000114 871 AGRPQYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 871 AGR~g~d~~G~~iil~~~~~~~~y~ 895 (2158)
|||.| ..|.++++++..+...+.
T Consensus 336 ~gR~g--~~g~ai~l~~~~d~~~~~ 358 (434)
T PRK11192 336 TGRAG--RKGTAISLVEAHDHLLLG 358 (434)
T ss_pred cccCC--CCceEEEEecHHHHHHHH
Confidence 99987 669999998876655443
|
|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=385.40 Aligned_cols=345 Identities=21% Similarity=0.312 Sum_probs=271.4
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|.+....++ .||.++|++|+++++.++.+. ++++.|-||+|||++|++|+++.+.+.+.. ...+..+|+|+||
T Consensus 89 LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gk-Dvl~~AKTGtGKTlAFLiPaie~l~k~~~~----~r~~~~vlIi~PT 163 (543)
T KOG0342|consen 89 LSPLTLKAIKEMGFETMTPVQQKTIPPLLEGK-DVLAAAKTGTGKTLAFLLPAIELLRKLKFK----PRNGTGVLIICPT 163 (543)
T ss_pred cCHHHHHHHHhcCccchhHHHHhhcCccCCCc-cceeeeccCCCceeeehhHHHHHHHhcccC----CCCCeeEEEeccc
Confidence 444445555 799999999999999999987 599999999999999999999998876543 2267789999999
Q ss_pred HHHHHHHHHHHHhhcccC-CcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeecccc
Q 000114 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
|+||.|++...++++... ++.|+.+.|+.+....+ ...++|+|+||+++ |++.+... ..+.+++++|+||||+
T Consensus 164 RELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~--f~~r~~k~lvlDEADr 241 (543)
T KOG0342|consen 164 RELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG--FLFRNLKCLVLDEADR 241 (543)
T ss_pred HHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc--chhhccceeEeecchh
Confidence 999999999999999877 99999999998876543 35899999999998 77766655 5677789999999999
Q ss_pred ccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccC-ceEEe-cCCcccc---cceeEEEeec
Q 000114 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEK-GLFYF-DNSYRPV---PLSQQYIGIQ 708 (2158)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~-~~~~f-~~~~rpv---~l~~~~~~~~ 708 (2158)
+++ ++...++.|+.-+ +...|.+++|||.| ..|.+..+..+.. ++|.- ...-.+. .+.|-++..+
T Consensus 242 lLd~GF~~di~~Ii~~l-------pk~rqt~LFSAT~~--~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~ 312 (543)
T KOG0342|consen 242 LLDIGFEEDVEQIIKIL-------PKQRQTLLFSATQP--SKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAP 312 (543)
T ss_pred hhhcccHHHHHHHHHhc-------cccceeeEeeCCCc--HHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEecc
Confidence 999 7877888776644 57888999999998 4455544443332 23221 1111121 2344333332
Q ss_pred cCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcch
Q 000114 709 VKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSND 788 (2158)
Q Consensus 709 ~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 788 (2158)
.. .++. .++..+.++....++||||+|...+...|..|....+.
T Consensus 313 ~~---~~f~----ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlp----------------------------- 356 (543)
T KOG0342|consen 313 SD---SRFS----LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLP----------------------------- 356 (543)
T ss_pred cc---chHH----HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCc-----------------------------
Confidence 22 2222 34555556665689999999999999999988743322
Q ss_pred hhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhh
Q 000114 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (2158)
Q Consensus 789 l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~ 868 (2158)
|...||++++..|..+...|++.+--|||||+++|||+|+|+|++||+ |++|+ .+.+|+||+
T Consensus 357 --------v~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ----~~~P~------d~~~YIHRv 418 (543)
T KOG0342|consen 357 --------VLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQ----YDPPS------DPEQYIHRV 418 (543)
T ss_pred --------hhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEE----eCCCC------CHHHHHHHh
Confidence 334499999999999999999999999999999999999999999999 77776 678999999
Q ss_pred cccCCCCCCCccEEEEEcCCCcHHHHHHhh
Q 000114 869 GRAGRPQYDSYGEGIIITGHSELRYYLSLM 898 (2158)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~~~~~y~~ll 898 (2158)
||+||.| +.|+++++..+.|+.++..+-
T Consensus 419 GRTaR~g--k~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 419 GRTAREG--KEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred ccccccC--CCceEEEEeChhHHHHHHHHh
Confidence 9999976 789999999999987766543
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=419.71 Aligned_cols=364 Identities=20% Similarity=0.252 Sum_probs=259.3
Q ss_pred cCcceEEecCCCCCCCCCCCCcccccCCC--ChhhHhhc-------------CCCCCCCHHHHHHHHHHHcCCCcEEEEc
Q 000114 454 NKGYEEIHVPAMKHKPLDPNEKLIKISEM--PEWAQPAF-------------KGMTQLNRVQSRVYKSALSSADNILLCA 518 (2158)
Q Consensus 454 ~~~~eei~vp~~~~~~~~~~~~l~~i~~l--p~~~~~~f-------------~g~~~l~~iQ~~~i~~~l~~~~nvlv~A 518 (2158)
.+.|-.-..|+...+-.+....+..|+.. +.|.+..| .|+..|+|+|.++|+.++.+.+ +|+++
T Consensus 404 ~~~~~~~~~p~~~~~~~~~~~~~~~i~~~~~~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrD-VLVim 482 (1195)
T PLN03137 404 VDRYGISSGPVEREPYVPKFIDVTYTEGSNDKKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYD-VFVLM 482 (1195)
T ss_pred hhhhcccCCCcccCccccccceeeeecCCCCccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCC-EEEEc
Confidence 34455555555443333333333344333 33553333 4899999999999999998865 99999
Q ss_pred cCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh----
Q 000114 519 PTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---- 594 (2158)
Q Consensus 519 PTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---- 594 (2158)
|||+|||+||++|++.. ...+|||+|+++|+.+++..+.. .|+++..+.|+.....+.
T Consensus 483 PTGSGKSLcYQLPAL~~--------------~GiTLVISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr 544 (1195)
T PLN03137 483 PTGGGKSLTYQLPALIC--------------PGITLVISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQ 544 (1195)
T ss_pred CCCccHHHHHHHHHHHc--------------CCcEEEEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHH
Confidence 99999999999999853 12699999999999988777655 488999999987755432
Q ss_pred -----hccccEEEcchhHH---HHHHhccCCCccccccceEEeeccccccc---CChhhHHHHHHHHHHHHhhccccccE
Q 000114 595 -----IEETQIIVTTPEKW---DIITRKSGDRTYTQLVKLLIIDEIHLLHD---NRGPVLESIVARTVRQIETTKEHIRL 663 (2158)
Q Consensus 595 -----~~~~~IiV~TPekl---d~l~r~~~~~~~l~~v~lIIiDEaH~l~d---~rg~~le~iv~r~~~~~~~~~~~~ri 663 (2158)
....+|+++|||++ +.+.+..........+.+|||||||++.+ .+.+.+..+ ..+ ....+.+++
T Consensus 545 ~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L-~~L----r~~fp~vPi 619 (1195)
T PLN03137 545 ELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGL-GIL----KQKFPNIPV 619 (1195)
T ss_pred HHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHH-HHH----HHhCCCCCe
Confidence 14679999999997 33444332222335589999999999875 245555432 111 123457889
Q ss_pred EEEccccCC--hHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEec
Q 000114 664 VGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVH 741 (2158)
Q Consensus 664 v~lSATlpn--~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~ 741 (2158)
++||||++. .+++...++.. . ...|..++....+...++ . +. ...... +...+.....+.+.||||+
T Consensus 620 lALTATAT~~V~eDI~~~L~l~--~-~~vfr~Sf~RpNL~y~Vv--~-k~-kk~le~----L~~~I~~~~~~esgIIYC~ 688 (1195)
T PLN03137 620 LALTATATASVKEDVVQALGLV--N-CVVFRQSFNRPNLWYSVV--P-KT-KKCLED----IDKFIKENHFDECGIIYCL 688 (1195)
T ss_pred EEEEecCCHHHHHHHHHHcCCC--C-cEEeecccCccceEEEEe--c-cc-hhHHHH----HHHHHHhcccCCCceeEeC
Confidence 999999874 35666666532 2 334444443333432222 1 11 111111 1222222223567999999
Q ss_pred ChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCc
Q 000114 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821 (2158)
Q Consensus 742 sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i 821 (2158)
||++|+.++..|...+ ..+++|||||++.+|..+++.|.+|++
T Consensus 689 SRke~E~LAe~L~~~G-------------------------------------ika~~YHAGLs~eeR~~vqe~F~~Gei 731 (1195)
T PLN03137 689 SRMDCEKVAERLQEFG-------------------------------------HKAAFYHGSMDPAQRAFVQKQWSKDEI 731 (1195)
T ss_pred chhHHHHHHHHHHHCC-------------------------------------CCeeeeeCCCCHHHHHHHHHHHhcCCC
Confidence 9999999999987654 236778999999999999999999999
Q ss_pred eEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHhhcCC
Q 000114 822 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQ 901 (2158)
Q Consensus 822 ~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~ 901 (2158)
+|||||++++||||+|+|++||+ |+.|. |+.+|+||+|||||.| ..|.|+++++..+...+..++...
T Consensus 732 ~VLVATdAFGMGIDkPDVR~VIH----ydlPk------SiEsYyQriGRAGRDG--~~g~cILlys~~D~~~~~~lI~~~ 799 (1195)
T PLN03137 732 NIICATVAFGMGINKPDVRFVIH----HSLPK------SIEGYHQECGRAGRDG--QRSSCVLYYSYSDYIRVKHMISQG 799 (1195)
T ss_pred cEEEEechhhcCCCccCCcEEEE----cCCCC------CHHHHHhhhcccCCCC--CCceEEEEecHHHHHHHHHHHhcc
Confidence 99999999999999999999999 77776 8889999999999988 569999999988877777776543
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=384.78 Aligned_cols=342 Identities=18% Similarity=0.292 Sum_probs=273.3
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCC-CCCCCCcEEEEEcccHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDG-SFNHSNYKIVYVAPMKALVAEVVGN 569 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~-~~~~~~~kil~iaP~kaLa~q~~~~ 569 (2158)
.||+.|+|||.+++|..++.+ ++|..|.||||||.+|++|++-.+..-+.... .-...++++++++|||+|++|+..+
T Consensus 263 ~~y~eptpIqR~aipl~lQ~r-D~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeE 341 (673)
T KOG0333|consen 263 PGYKEPTPIQRQAIPLGLQNR-DPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEE 341 (673)
T ss_pred cCCCCCchHHHhhccchhccC-CeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHH
Confidence 699999999999999777665 49999999999999999999998877653221 1234678999999999999999999
Q ss_pred HHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccccc-CChhhHH
Q 000114 570 LSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLE 644 (2158)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le 644 (2158)
-.+++..+|+++..+.|+.+...+. ..+++|+|+||+++ |++-++. ..++++.+||+|||+.+.| ++-+.+.
T Consensus 342 t~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~---lvl~qctyvvldeadrmiDmgfE~dv~ 418 (673)
T KOG0333|consen 342 TNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRY---LVLNQCTYVVLDEADRMIDMGFEPDVQ 418 (673)
T ss_pred HHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHH---HHhccCceEeccchhhhhcccccHHHH
Confidence 9999999999999999999988763 46899999999998 7887765 4678899999999999999 7888888
Q ss_pred HHHHHHHHHH------------------hhccccccEEEEccccCChHHHHHHHhccccCceEE-ecCCcccccc-eeEE
Q 000114 645 SIVARTVRQI------------------ETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNSYRPVPL-SQQY 704 (2158)
Q Consensus 645 ~iv~r~~~~~------------------~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~-f~~~~rpv~l-~~~~ 704 (2158)
.+++.+...- .....-.+.+.||||+|. .+...++..+..++++ ....-+|.+. +|.+
T Consensus 419 ~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p--~verlar~ylr~pv~vtig~~gk~~~rveQ~v 496 (673)
T KOG0333|consen 419 KILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPP--AVERLARSYLRRPVVVTIGSAGKPTPRVEQKV 496 (673)
T ss_pred HHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCCh--HHHHHHHHHhhCCeEEEeccCCCCccchheEE
Confidence 8887653211 111122688999999995 3555555444445444 4445566654 4555
Q ss_pred EeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcc
Q 000114 705 IGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMV 784 (2158)
Q Consensus 705 ~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 784 (2158)
+.+......+++ .+ +++.....++|||+|+++.|..+|+.|...++.
T Consensus 497 ~m~~ed~k~kkL---~e-----il~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~------------------------- 543 (673)
T KOG0333|consen 497 EMVSEDEKRKKL---IE-----ILESNFDPPIIIFVNTKKGADALAKILEKAGYK------------------------- 543 (673)
T ss_pred EEecchHHHHHH---HH-----HHHhCCCCCEEEEEechhhHHHHHHHHhhccce-------------------------
Confidence 555554332222 21 233334679999999999999999999887654
Q ss_pred CcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHH
Q 000114 785 KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (2158)
Q Consensus 785 ~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2158)
+..+|||-++++|+.++..|++|..+|||||+++++|||+|+|.+||| ||..+ |+.+|
T Consensus 544 ------------~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVin----ydmak------sieDY 601 (673)
T KOG0333|consen 544 ------------VTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVIN----YDMAK------SIEDY 601 (673)
T ss_pred ------------EEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeee----cchhh------hHHHH
Confidence 445699999999999999999999999999999999999999999999 88777 89999
Q ss_pred HHhhcccCCCCCCCccEEEEEcCCCcHHHHH
Q 000114 865 MQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (2158)
+||+||+||+| +.|.++.|++..+-..|.
T Consensus 602 tHRIGRTgRAG--k~GtaiSflt~~dt~v~y 630 (673)
T KOG0333|consen 602 THRIGRTGRAG--KSGTAISFLTPADTAVFY 630 (673)
T ss_pred HHHhccccccc--cCceeEEEeccchhHHHH
Confidence 99999999998 889999999998755443
|
|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=403.60 Aligned_cols=399 Identities=27% Similarity=0.451 Sum_probs=309.4
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
++-++|++||-.+-. +++|+|+|+|.+|||++|+.||.-.-.. .. |+||.+|.+||.+|.+++|+..|+.
T Consensus 297 elD~FQk~Ai~~ler-g~SVFVAAHTSAGKTvVAEYAialaq~h---~T--R~iYTSPIKALSNQKfRDFk~tF~D---- 366 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLER-GDSVFVAAHTSAGKTVVAEYAIALAQKH---MT--RTIYTSPIKALSNQKFRDFKETFGD---- 366 (1248)
T ss_pred CccHHHHHHHHHHHc-CCeEEEEecCCCCcchHHHHHHHHHHhh---cc--ceEecchhhhhccchHHHHHHhccc----
Confidence 688999999998866 5669999999999999999998744433 33 9999999999999999999999985
Q ss_pred EEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCCChHHHHHHHHHHHHhhcC
Q 000114 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVE 1499 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g~~~e~~isrl~~i~~~~~ 1499 (2158)
|+.+|||.... ..+.++|+|.|.+-+++-+ +...++++.+||+||+|.+.+ +||.+||.++- .+|
T Consensus 367 -vgLlTGDvqin----PeAsCLIMTTEILRsMLYr--gadliRDvE~VIFDEVHYiND~eRGvVWEEViI-------MlP 432 (1248)
T KOG0947|consen 367 -VGLLTGDVQIN----PEASCLIMTTEILRSMLYR--GADLIRDVEFVIFDEVHYINDVERGVVWEEVII-------MLP 432 (1248)
T ss_pred -cceeecceeeC----CCcceEeehHHHHHHHHhc--ccchhhccceEEEeeeeecccccccccceeeee-------ecc
Confidence 55899987755 5678999999999888765 566789999999999999998 79999998763 348
Q ss_pred CCceEEEeccCCCChHHHHHHhccCCCc-eEecCCCCcccccEEEEeccccc-------------chHHHHHhc------
Q 000114 1500 NKIRIVALSTSLANAKDLGEWIGATSHG-LFNFPPGVRPVPLEIHIQGVDIT-------------NFEARMQAM------ 1559 (2158)
Q Consensus 1500 ~~~riV~lSATl~n~~dl~~wl~~~~~~-i~~f~~~~rpv~l~~~i~~~~~~-------------~~~~~~~~~------ 1559 (2158)
..+++|+||||+||..++++|+|..+.. ++..+...||||++..+..-... .+.......
T Consensus 433 ~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~ 512 (1248)
T KOG0947|consen 433 RHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKF 512 (1248)
T ss_pred ccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccc
Confidence 8999999999999999999999987654 67777789999999776322100 000000000
Q ss_pred ------------------------------------Ch--HHHHHHHHhHh--cCCCEEEEecChHHHHHHHHHHHhhcc
Q 000114 1560 ------------------------------------TK--PTFTAIVQHAK--NEKPALVFVPSRKYVRLTAVDLMTYSS 1599 (2158)
Q Consensus 1560 ------------------------------------~k--~~~~~i~~~~~--~~~~~IVFv~sr~~~~~~a~~L~~~~~ 1599 (2158)
.+ +.+..+..++. ..-|++|||-|++.|+..|..|...-.
T Consensus 513 ~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL 592 (1248)
T KOG0947|consen 513 VDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNL 592 (1248)
T ss_pred cccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCc
Confidence 00 23444444443 335899999999999999998865433
Q ss_pred cCCcccccccCCCcccchhhHhh----hh--H------HHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecC
Q 000114 1600 MDGDQKSAFLLWPAEEVEPFIDN----IQ--E------EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSS 1667 (2158)
Q Consensus 1600 ~~~~~~~~~l~~~~~~l~~~~~~----i~--d------~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~ 1667 (2158)
.++.. ..++.-++++ +. | ..+++.+..|++.||||+-+--+..|+.+|..|-++||+||-
T Consensus 593 ~~~~E--------KseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATE 664 (1248)
T KOG0947|consen 593 TDSKE--------KSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATE 664 (1248)
T ss_pred ccchh--------HHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehh
Confidence 32222 2233333332 22 1 346778889999999999999999999999999999999999
Q ss_pred ccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC--hHHHHHHHhh-CCCccc
Q 000114 1668 SMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP--RKEYYKKFLY-DAFPVE 1744 (2158)
Q Consensus 1668 ~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~--~~~~~~k~l~-~~~piE 1744 (2158)
++|+|||.|+.+||+.+.+.+||++. ..+.+.+|.||+|||||.|.|..|.++++|... ....+++++. .+.+++
T Consensus 665 TFAMGVNMPARtvVF~Sl~KhDG~ef--R~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G~~~~L~ 742 (1248)
T KOG0947|consen 665 TFAMGVNMPARTVVFSSLRKHDGNEF--RELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMGGPTRLE 742 (1248)
T ss_pred hhhhhcCCCceeEEeeehhhccCcce--eecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcCCCchhh
Confidence 99999999999999999999999874 456899999999999999999999999999886 4566777665 799999
Q ss_pred cchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhh
Q 000114 1745 SHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTF 1778 (2158)
Q Consensus 1745 S~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~ 1778 (2158)
|++.-.....+|---+. .-.+-|.+..+|
T Consensus 743 SQFRlTY~MILnLLRve-----~lrvEdm~krSf 771 (1248)
T KOG0947|consen 743 SQFRLTYGMILNLLRVE-----ALRVEDMMKRSF 771 (1248)
T ss_pred hhhhhHHHHHHHHHHHH-----HHHHHHHHHHHh
Confidence 99854444444322211 133445666666
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=418.94 Aligned_cols=344 Identities=17% Similarity=0.211 Sum_probs=256.7
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc---CCCceEEEEEcccHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEA 1401 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~---~~~~~~~v~IaP~ra 1401 (2158)
.++....+.+.. ||..|+|+|.++++.++.+. ++|++||||||||++|++|++.++.... ...++.+|||+||++
T Consensus 136 ~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~-dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTre 214 (545)
T PTZ00110 136 SFPDYILKSLKNAGFTEPTPIQVQGWPIALSGR-DMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRE 214 (545)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-CEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHH
Confidence 355667777776 79999999999999999865 5999999999999999999998876521 122458999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC
Q 000114 1402 LAKERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2158)
Q Consensus 1402 La~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~ 1478 (2158)
||.|+.+.+. .|+...++++..+.|+..... .....++|+|+||+++..++.+. ...++++++|||||||++.+
T Consensus 215 La~Qi~~~~~-~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~--~~~l~~v~~lViDEAd~mld 291 (545)
T PTZ00110 215 LAEQIREQCN-KFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN--VTNLRRVTYLVLDEADRMLD 291 (545)
T ss_pred HHHHHHHHHH-HHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcC--CCChhhCcEEEeehHHhhhh
Confidence 9999999988 677667888888888766432 23345699999999998887763 34688999999999999987
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCC-c-ccccEEEEecccccchHHH
Q 000114 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGV-R-PVPLEIHIQGVDITNFEAR 1555 (2158)
Q Consensus 1479 ~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~-r-pv~l~~~i~~~~~~~~~~~ 1555 (2158)
.. +...++.+..++....|++++|||++. ...++.++-......+...... . ...+...+...... ..
T Consensus 292 ~g------f~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~---~k 362 (545)
T PTZ00110 292 MG------FEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEH---EK 362 (545)
T ss_pred cc------hHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEech---hH
Confidence 54 344555666666778999999999976 3556655543211111111110 0 01111111111110 01
Q ss_pred HHhcChHHHHHHHHhH-hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcc
Q 000114 1556 MQAMTKPTFTAIVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (2158)
Q Consensus 1556 ~~~~~k~~~~~i~~~~-~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (2158)
. ..+..++... ..+.++||||+|++.|+.++..|.. .+.
T Consensus 363 ~-----~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~-----------------------------------~g~ 402 (545)
T PTZ00110 363 R-----GKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRL-----------------------------------DGW 402 (545)
T ss_pred H-----HHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHH-----------------------------------cCC
Confidence 0 1111222222 2677999999999999999876631 234
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCC
Q 000114 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2158)
Q Consensus 1635 gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g 1714 (2158)
.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++.+|| +++.|.++.+|+||+|||||.|
T Consensus 403 ~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI----------~~d~P~s~~~yvqRiGRtGR~G 472 (545)
T PTZ00110 403 PALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVI----------NFDFPNQIEDYVHRIGRTGRAG 472 (545)
T ss_pred cEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEE----------EeCCCCCHHHHHHHhcccccCC
Confidence 578899999999999999999999999999999999999999999999 6778889999999999999987
Q ss_pred CCCceEEEEEecCChHHHHH
Q 000114 1715 LDNSGKCVILCHAPRKEYYK 1734 (2158)
Q Consensus 1715 ~d~~G~~iil~~~~~~~~~~ 1734 (2158)
..|.|+.|+...+.....
T Consensus 473 --~~G~ai~~~~~~~~~~~~ 490 (545)
T PTZ00110 473 --AKGASYTFLTPDKYRLAR 490 (545)
T ss_pred --CCceEEEEECcchHHHHH
Confidence 789999998887654443
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=416.40 Aligned_cols=338 Identities=19% Similarity=0.250 Sum_probs=256.0
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
|.......+.. ||..|||+|.+|++.++++. |++++||||||||++|.+|++..+.... ..++++|++||++||.|
T Consensus 11 l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~-dvi~~a~TGsGKT~a~~lpil~~l~~~~--~~~~~lil~PtreLa~Q 87 (460)
T PRK11776 11 LPPALLANLNELGYTEMTPIQAQSLPAILAGK-DVIAQAKTGSGKTAAFGLGLLQKLDVKR--FRVQALVLCPTRELADQ 87 (460)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-CEEEECCCCCcHHHHHHHHHHHHhhhcc--CCceEEEEeCCHHHHHH
Confidence 55566667766 79999999999999999865 5999999999999999999999986522 23489999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcchhhh---cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCC
Q 000114 1406 RYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2158)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~ltG~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~ 1482 (2158)
+++.++.......++++..++|+.+...+ ....++|+|+||++|..++++ ....++++++||+||||++.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~--~~~~l~~l~~lViDEad~~l~~g-- 163 (460)
T PRK11776 88 VAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK--GTLDLDALNTLVLDEADRMLDMG-- 163 (460)
T ss_pred HHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc--CCccHHHCCEEEEECHHHHhCcC--
Confidence 99999843332347899999998776422 234569999999999988876 34468899999999999988764
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcCh
Q 000114 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTK 1561 (2158)
Q Consensus 1483 ~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k 1561 (2158)
+...+..+...++...|++++|||+++ ...++..+...+.. +..........+...+....... +.
T Consensus 164 ----~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~-i~~~~~~~~~~i~~~~~~~~~~~---k~----- 230 (460)
T PRK11776 164 ----FQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVE-VKVESTHDLPAIEQRFYEVSPDE---RL----- 230 (460)
T ss_pred ----cHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEE-EEECcCCCCCCeeEEEEEeCcHH---HH-----
Confidence 344455556666778999999999986 34455444333222 22222222222333332222111 11
Q ss_pred HHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecC
Q 000114 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (2158)
Q Consensus 1562 ~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~ 1641 (2158)
.....+... ...+++||||+|++.|+.++..|.. .+..+..+||
T Consensus 231 ~~l~~ll~~-~~~~~~lVF~~t~~~~~~l~~~L~~-----------------------------------~~~~v~~~hg 274 (460)
T PRK11776 231 PALQRLLLH-HQPESCVVFCNTKKECQEVADALNA-----------------------------------QGFSALALHG 274 (460)
T ss_pred HHHHHHHHh-cCCCceEEEECCHHHHHHHHHHHHh-----------------------------------CCCcEEEEeC
Confidence 112222232 3457899999999999999977632 2456899999
Q ss_pred CCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEE
Q 000114 1642 GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1721 (2158)
Q Consensus 1642 ~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~ 1721 (2158)
+|++.+|..+++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||.| ..|.|
T Consensus 275 ~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI----------~~d~p~~~~~yiqR~GRtGR~g--~~G~a 342 (460)
T PRK11776 275 DLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVI----------NYELARDPEVHVHRIGRTGRAG--SKGLA 342 (460)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEE----------EecCCCCHhHhhhhcccccCCC--CcceE
Confidence 99999999999999999999999999999999999999999 6778889999999999999987 67999
Q ss_pred EEEecCChHHH
Q 000114 1722 VILCHAPRKEY 1732 (2158)
Q Consensus 1722 iil~~~~~~~~ 1732 (2158)
+.++...+...
T Consensus 343 i~l~~~~e~~~ 353 (460)
T PRK11776 343 LSLVAPEEMQR 353 (460)
T ss_pred EEEEchhHHHH
Confidence 99988765444
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=413.37 Aligned_cols=341 Identities=20% Similarity=0.275 Sum_probs=249.9
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcC-----CCceEEEEEccc
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE-----TGVMRAVYIAPL 1399 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~-----~~~~~~v~IaP~ 1399 (2158)
.|+....+.+.. ||..|+|+|.+|++.++++. |++++||||||||++|++|++..+..... ..++++|||+||
T Consensus 14 ~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~-dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~Pt 92 (423)
T PRK04837 14 ALHPQVVEALEKKGFHNCTPIQALALPLTLAGR-DVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPT 92 (423)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-cEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCc
Confidence 466667777776 79999999999999999865 59999999999999999999998865321 123589999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchh--hhcc-cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccc
Q 000114 1400 EALAKERYRDWEIKFGQGLGMRVVELTGETAMD--LKLL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476 (2158)
Q Consensus 1400 raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~--~~~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l 1476 (2158)
++||.|+++.+. .+....|+++..++|+...+ ...+ ..++|+|+||+++..+++. ....+++++++|+||||++
T Consensus 93 reLa~Qi~~~~~-~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~--~~~~l~~v~~lViDEad~l 169 (423)
T PRK04837 93 RELAVQIHADAE-PLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ--NHINLGAIQVVVLDEADRM 169 (423)
T ss_pred HHHHHHHHHHHH-HHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcccccccEEEEecHHHH
Confidence 999999999988 56656689999999876544 2223 3469999999999888765 3446889999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHhhcC--CCceEEEeccCCCCh-HHHH-HHhccCCCceEecCCCCc-ccccEEEEecccccc
Q 000114 1477 GGQGGPVLEVIVSRMRYIASQVE--NKIRIVALSTSLANA-KDLG-EWIGATSHGLFNFPPGVR-PVPLEIHIQGVDITN 1551 (2158)
Q Consensus 1477 ~~~~g~~~e~~isrl~~i~~~~~--~~~riV~lSATl~n~-~dl~-~wl~~~~~~i~~f~~~~r-pv~l~~~i~~~~~~~ 1551 (2158)
.+.+ +...+..+...++ ...+.+++|||++.. ..+. .++... ..+...+... ...+...+.. ..
T Consensus 170 ~~~~------f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p--~~i~v~~~~~~~~~i~~~~~~---~~ 238 (423)
T PRK04837 170 FDLG------FIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNP--EYVEVEPEQKTGHRIKEELFY---PS 238 (423)
T ss_pred hhcc------cHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCC--EEEEEcCCCcCCCceeEEEEe---CC
Confidence 7654 3333444444444 245678999999763 2332 333321 1222222111 1111111110 01
Q ss_pred hHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHH
Q 000114 1552 FEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKAT 1631 (2158)
Q Consensus 1552 ~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~ 1631 (2158)
..... ..+..+... ....++||||++++.|+.++..|..
T Consensus 239 ~~~k~-----~~l~~ll~~-~~~~~~lVF~~t~~~~~~l~~~L~~----------------------------------- 277 (423)
T PRK04837 239 NEEKM-----RLLQTLIEE-EWPDRAIIFANTKHRCEEIWGHLAA----------------------------------- 277 (423)
T ss_pred HHHHH-----HHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHh-----------------------------------
Confidence 11111 111122222 3457899999999999988866632
Q ss_pred hcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCC
Q 000114 1632 LRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHAS 1711 (2158)
Q Consensus 1632 l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaG 1711 (2158)
.+..+.++||+|++.+|..+++.|++|+++|||||+++++|||+|++.+|| |++.|.+..+|+||+||||
T Consensus 278 ~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI----------~~d~P~s~~~yiqR~GR~g 347 (423)
T PRK04837 278 DGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVF----------NYDLPDDCEDYVHRIGRTG 347 (423)
T ss_pred CCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEE----------EeCCCCchhheEecccccc
Confidence 245689999999999999999999999999999999999999999999999 6778889999999999999
Q ss_pred CCCCCCceEEEEEecCChHHHHH
Q 000114 1712 RPLLDNSGKCVILCHAPRKEYYK 1734 (2158)
Q Consensus 1712 R~g~d~~G~~iil~~~~~~~~~~ 1734 (2158)
|.| ..|.|+.|..+.+...+.
T Consensus 348 R~G--~~G~ai~~~~~~~~~~~~ 368 (423)
T PRK04837 348 RAG--ASGHSISLACEEYALNLP 368 (423)
T ss_pred CCC--CCeeEEEEeCHHHHHHHH
Confidence 997 789999998876544443
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=384.49 Aligned_cols=358 Identities=20% Similarity=0.257 Sum_probs=282.0
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCC--ceEEEEEcccHHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETG--VMRAVYIAPLEAL 1402 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~--~~~~v~IaP~raL 1402 (2158)
+|..|.++.+-. ||..|+|||.++||..+.+.| ++.||.||||||.+|.+|+|.++... |.+ ..|+++++|||+|
T Consensus 187 NLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkD-Ica~A~TGsGKTAAF~lPiLERLlYr-Pk~~~~TRVLVL~PTREL 264 (691)
T KOG0338|consen 187 NLSRPLLKACSTLGYKKPTPIQVATIPVALLGKD-ICACAATGSGKTAAFALPILERLLYR-PKKVAATRVLVLVPTREL 264 (691)
T ss_pred ccchHHHHHHHhcCCCCCCchhhhcccHHhhcch-hhheecccCCchhhhHHHHHHHHhcC-cccCcceeEEEEeccHHH
Confidence 456677887766 899999999999999888777 99999999999999999999998863 322 2489999999999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC
Q 000114 1403 AKERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2158)
Q Consensus 1403 a~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~ 1479 (2158)
+.|++...+ ++..+..+.|+.+.|+.+... .+-..+||+|+||+++.+++|+.. ...+.+|..+|+||||+++++
T Consensus 265 aiQv~sV~~-qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~-sf~ldsiEVLvlDEADRMLee 342 (691)
T KOG0338|consen 265 AIQVHSVTK-QLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSP-SFNLDSIEVLVLDEADRMLEE 342 (691)
T ss_pred HHHHHHHHH-HHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCC-CccccceeEEEechHHHHHHH
Confidence 999999888 677777899999999987653 244567999999999999998754 457999999999999999877
Q ss_pred CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHh
Q 000114 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQA 1558 (2158)
Q Consensus 1480 ~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~ 1558 (2158)
+ +-..|+.|....+++.|.+++|||+.. ..+++..--..+..+|.-.+...+..+...+....... .
T Consensus 343 g------FademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~r------e 410 (691)
T KOG0338|consen 343 G------FADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKR------E 410 (691)
T ss_pred H------HHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheecccc------c
Confidence 6 888899998888999999999999976 56666544344444554333333322221111100000 0
Q ss_pred cChHH-HHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEE
Q 000114 1559 MTKPT-FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2158)
Q Consensus 1559 ~~k~~-~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~ 1637 (2158)
..++. +..+... .-...+||||.|+++|..+-. |--+++..++
T Consensus 411 ~dRea~l~~l~~r-tf~~~~ivFv~tKk~AHRl~I-----------------------------------llGLlgl~ag 454 (691)
T KOG0338|consen 411 GDREAMLASLITR-TFQDRTIVFVRTKKQAHRLRI-----------------------------------LLGLLGLKAG 454 (691)
T ss_pred cccHHHHHHHHHH-hcccceEEEEehHHHHHHHHH-----------------------------------HHHHhhchhh
Confidence 01111 1222222 235779999999999976653 3345677899
Q ss_pred EecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCC
Q 000114 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2158)
Q Consensus 1638 ~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~ 1717 (2158)
-+||.|++.+|-..++.|+++++.|||||++++||+|++.+.+|| |+..|.++..|+||+||+.|+| +
T Consensus 455 ElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVI----------Ny~mP~t~e~Y~HRVGRTARAG--R 522 (691)
T KOG0338|consen 455 ELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVI----------NYAMPKTIEHYLHRVGRTARAG--R 522 (691)
T ss_pred hhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEE----------eccCchhHHHHHHHhhhhhhcc--c
Confidence 999999999999999999999999999999999999999999999 8899999999999999999998 8
Q ss_pred ceEEEEEecCChHHHHHHHhhCCCccccch
Q 000114 1718 SGKCVILCHAPRKEYYKKFLYDAFPVESHL 1747 (2158)
Q Consensus 1718 ~G~~iil~~~~~~~~~~k~l~~~~piES~L 1747 (2158)
.|.++.|+..++...++..+.......+.+
T Consensus 523 aGrsVtlvgE~dRkllK~iik~~~~a~~kl 552 (691)
T KOG0338|consen 523 AGRSVTLVGESDRKLLKEIIKSSTKAGSKL 552 (691)
T ss_pred CcceEEEeccccHHHHHHHHhhhhhcccch
Confidence 999999999998777777777655555555
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=415.41 Aligned_cols=344 Identities=19% Similarity=0.297 Sum_probs=252.7
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.|++.+..++ .||.+|+++|.++++.++.++ |+|++||||||||++|++|+++.+........ ......++|||+|
T Consensus 93 ~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~-dvi~~apTGSGKTlay~lpil~~l~~~~~~~~-~~~~~~~aLil~P 170 (475)
T PRK01297 93 NLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGH-DAIGRAQTGTGKTAAFLISIINQLLQTPPPKE-RYMGEPRALIIAP 170 (475)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHHHhcCcccc-cccCCceEEEEeC
Confidence 4677777776 799999999999999988875 59999999999999999999999876432110 0112468999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh----hccccEEEcchhHHHHHHhccCCCccccccceEEeecccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
|++||.|+++.++.+.+..++.+..++|+.+...+. ...++|+|+||+++..+..++. ..++++++|||||+|.
T Consensus 171 treLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~--~~l~~l~~lViDEah~ 248 (475)
T PRK01297 171 TRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGE--VHLDMVEVMVLDEADR 248 (475)
T ss_pred cHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCC--cccccCceEEechHHH
Confidence 999999999999998888899999999987655432 2467999999999844444433 5688999999999999
Q ss_pred ccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccccCceEEecCC-cccccceeEEEeeccCC
Q 000114 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNS-YRPVPLSQQYIGIQVKK 711 (2158)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn-~~dv~~~l~~~~~~~~~~f~~~-~rpv~l~~~~~~~~~~~ 711 (2158)
+.+ .+.+.+..++..+ . .....|++++|||+++ ..+++..+...+ ..+.+... .....+.+++..+....
T Consensus 249 l~~~~~~~~l~~i~~~~----~-~~~~~q~i~~SAT~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~ 321 (475)
T PRK01297 249 MLDMGFIPQVRQIIRQT----P-RKEERQTLLFSATFTDDVMNLAKQWTTDP--AIVEIEPENVASDTVEQHVYAVAGSD 321 (475)
T ss_pred HHhcccHHHHHHHHHhC----C-CCCCceEEEEEeecCHHHHHHHHHhccCC--EEEEeccCcCCCCcccEEEEEecchh
Confidence 876 4544454443322 1 1235689999999873 223333222221 11222221 11122334444333221
Q ss_pred hhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhh
Q 000114 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (2158)
Q Consensus 712 ~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 791 (2158)
+... ++. +.......++||||++++.++.++..|...+
T Consensus 322 ---k~~~----l~~-ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~---------------------------------- 359 (475)
T PRK01297 322 ---KYKL----LYN-LVTQNPWERVMVFANRKDEVRRIEERLVKDG---------------------------------- 359 (475)
T ss_pred ---HHHH----HHH-HHHhcCCCeEEEEeCCHHHHHHHHHHHHHcC----------------------------------
Confidence 1222 222 2223335699999999999999998886533
Q ss_pred hccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhccc
Q 000114 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (2158)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (2158)
..+..+||+|+..+|..+++.|++|+++|||||+++++|||+|++++||+ |+.+. |+.+|+||+|||
T Consensus 360 ---~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~----~~~P~------s~~~y~Qr~GRa 426 (475)
T PRK01297 360 ---INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN----FTLPE------DPDDYVHRIGRT 426 (475)
T ss_pred ---CCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEE----eCCCC------CHHHHHHhhCcc
Confidence 23567799999999999999999999999999999999999999999999 66554 788999999999
Q ss_pred CCCCCCCccEEEEEcCCCcHH
Q 000114 872 GRPQYDSYGEGIIITGHSELR 892 (2158)
Q Consensus 872 GR~g~d~~G~~iil~~~~~~~ 892 (2158)
||.| ..|.++++.+.++..
T Consensus 427 GR~g--~~g~~i~~~~~~d~~ 445 (475)
T PRK01297 427 GRAG--ASGVSISFAGEDDAF 445 (475)
T ss_pred CCCC--CCceEEEEecHHHHH
Confidence 9988 569999999876543
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=421.60 Aligned_cols=336 Identities=21% Similarity=0.286 Sum_probs=252.4
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++.+.+++ .||.+|+|+|.++++.++.+. ++|++||||||||++|.+|+++.+.... ..+++||++||
T Consensus 13 L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~-dvl~~ApTGsGKT~af~lpll~~l~~~~--------~~~~~LIL~PT 83 (629)
T PRK11634 13 LKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPLLHNLDPEL--------KAPQILVLAPT 83 (629)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCCcHHHHHHHHHHHHhhhcc--------CCCeEEEEeCc
Confidence 566666666 699999999999999998775 5999999999999999999999875431 34589999999
Q ss_pred HHHHHHHHHHHHhhcccC-CcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeecccc
Q 000114 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
++||.|+++.+..+.+.. ++.+..++|+.+...+. ...++|+|+||+++ +.+.+.. ..++++++|||||||.
T Consensus 84 reLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~---l~l~~l~~lVlDEAd~ 160 (629)
T PRK11634 84 RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGT---LDLSKLSGLVLDEADE 160 (629)
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---cchhhceEEEeccHHH
Confidence 999999999998876654 78999999987765432 34689999999998 6665543 4578899999999998
Q ss_pred ccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCCh-HHHHHHHhccccCceEEecCCc-ccccceeEEEeeccCC
Q 000114 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-EDVALFLRVNLEKGLFYFDNSY-RPVPLSQQYIGIQVKK 711 (2158)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~-~dv~~~l~~~~~~~~~~f~~~~-rpv~l~~~~~~~~~~~ 711 (2158)
+.+ .+...++.++.. .+...|++++|||+|+. ..+...+...+ . .+...... ....+.+.++.+...
T Consensus 161 ml~~gf~~di~~Il~~-------lp~~~q~llfSAT~p~~i~~i~~~~l~~~-~-~i~i~~~~~~~~~i~q~~~~v~~~- 230 (629)
T PRK11634 161 MLRMGFIEDVETIMAQ-------IPEGHQTALFSATMPEAIRRITRRFMKEP-Q-EVRIQSSVTTRPDISQSYWTVWGM- 230 (629)
T ss_pred HhhcccHHHHHHHHHh-------CCCCCeEEEEEccCChhHHHHHHHHcCCC-e-EEEccCccccCCceEEEEEEechh-
Confidence 876 565666655543 46678999999999852 22332222111 1 11111111 111233334333221
Q ss_pred hhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhh
Q 000114 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (2158)
Q Consensus 712 ~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 791 (2158)
.+...+. .++......++||||+|++.+..++..|...++
T Consensus 231 --~k~~~L~-----~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~--------------------------------- 270 (629)
T PRK11634 231 --RKNEALV-----RFLEAEDFDAAIIFVRTKNATLEVAEALERNGY--------------------------------- 270 (629)
T ss_pred --hHHHHHH-----HHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCC---------------------------------
Confidence 1222222 222333457899999999999999999876542
Q ss_pred hccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhccc
Q 000114 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (2158)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (2158)
.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+ ||.+. +..+|+||+|||
T Consensus 271 ----~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~----~d~P~------~~e~yvqRiGRt 336 (629)
T PRK11634 271 ----NSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN----YDIPM------DSESYVHRIGRT 336 (629)
T ss_pred ----CEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE----eCCCC------CHHHHHHHhccc
Confidence 3566799999999999999999999999999999999999999999999 66554 677999999999
Q ss_pred CCCCCCCccEEEEEcCCCcHHHHH
Q 000114 872 GRPQYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 872 GR~g~d~~G~~iil~~~~~~~~y~ 895 (2158)
||.| ..|.+++++...+...+.
T Consensus 337 GRaG--r~G~ai~~v~~~e~~~l~ 358 (629)
T PRK11634 337 GRAG--RAGRALLFVENRERRLLR 358 (629)
T ss_pred cCCC--CcceEEEEechHHHHHHH
Confidence 9988 679999999887654443
|
|
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=400.04 Aligned_cols=392 Identities=27% Similarity=0.396 Sum_probs=304.4
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
+|-|+|+.++.+ +..++.|||+|.|.+|||.+|..+|...+... -++||.+|.|||.+|.++++..-|
T Consensus 129 ~LDpFQ~~aI~C-idr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k-----------QRVIYTSPIKALSNQKYREl~~EF 196 (1041)
T KOG0948|consen 129 TLDPFQSTAIKC-IDRGESVLVSAHTSAGKTVVAEYAIAMSLREK-----------QRVIYTSPIKALSNQKYRELLEEF 196 (1041)
T ss_pred ccCchHhhhhhh-hcCCceEEEEeecCCCcchHHHHHHHHHHHhc-----------CeEEeeChhhhhcchhHHHHHHHh
Confidence 789999999986 56778899999999999999999999998754 389999999999999999999887
Q ss_pred ccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CChhhHHHHHHHHHHH
Q 000114 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~iv~r~~~~ 653 (2158)
+. |+..|||.+.+. .+.-+|+|.|-+..+.-+.. ..+..|.+||+||+|.+-| +||-+||.-+--
T Consensus 197 ~D----VGLMTGDVTInP----~ASCLVMTTEILRsMLYRGS--EvmrEVaWVIFDEIHYMRDkERGVVWEETIIl---- 262 (1041)
T KOG0948|consen 197 KD----VGLMTGDVTINP----DASCLVMTTEILRSMLYRGS--EVMREVAWVIFDEIHYMRDKERGVVWEETIIL---- 262 (1041)
T ss_pred cc----cceeecceeeCC----CCceeeeHHHHHHHHHhccc--hHhheeeeEEeeeehhccccccceeeeeeEEe----
Confidence 74 788999998876 46778899998854444433 5678899999999999999 799999865432
Q ss_pred HhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEe---------eccCChh--HHH-HHhhH
Q 000114 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG---------IQVKKPL--QRF-QLMND 721 (2158)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~---------~~~~~~~--~~~-~~l~~ 721 (2158)
.+.++|.|+||||+||+..+|+|+..-...++.+....|||.||+..++. +.++... ..+ .+|..
T Consensus 263 ---lP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~ 339 (1041)
T KOG0948|consen 263 ---LPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSV 339 (1041)
T ss_pred ---ccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHH
Confidence 47899999999999999999999998878899999999999999876432 2222111 111 11110
Q ss_pred ------------------------------HHHHHHHHHh--CCCeEEEEecChHHHHHHHHHHHHHhhccccccccccc
Q 000114 722 ------------------------------LCYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKE 769 (2158)
Q Consensus 722 ------------------------------~~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~ 769 (2158)
-+|..+.-.. ...|+|||+-|+++|+..|..+.+..++.+.-.
T Consensus 340 l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk----- 414 (1041)
T KOG0948|consen 340 LRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEK----- 414 (1041)
T ss_pred hhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHH-----
Confidence 1222222222 246999999999999999998887654432110
Q ss_pred CchhHHHHHhhhhcc--------CcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEE
Q 000114 770 DSVSREILQSHTDMV--------KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTV 841 (2158)
Q Consensus 770 ~~~~~~~l~~~~~~~--------~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~v 841 (2158)
..-.++........ .-..+-.++.+|||+||+||-+--++.|+-+|.+|-++||+||.|++.|+|.||.+|
T Consensus 415 -~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTV 493 (1041)
T KOG0948|consen 415 -ELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTV 493 (1041)
T ss_pred -HHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeE
Confidence 11112222222211 122345678899999999999999999999999999999999999999999999999
Q ss_pred EEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCc-HHHHHHhh-cCCCcccchhhHhhHHHHHHH
Q 000114 842 IIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE-LRYYLSLM-NQQLPIESQFVSKLADQLNAE 919 (2158)
Q Consensus 842 VI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~-~~~y~~ll-~~~~pieS~l~~~l~d~lnae 919 (2158)
|+-....||+.. +.++|.-+|+||.|||||.|.|..|.+|++.+..- .+..+.++ .+.-|+.|.|+-.....||--
T Consensus 494 vFT~~rKfDG~~--fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtYnMiLNLl 571 (1041)
T KOG0948|consen 494 VFTAVRKFDGKK--FRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTYNMILNLL 571 (1041)
T ss_pred EEeeccccCCcc--eeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHHHHHHHHH
Confidence 998888899886 45689999999999999999999999999998853 34445554 455689999988777777754
Q ss_pred HHhc
Q 000114 920 IVLG 923 (2158)
Q Consensus 920 I~~~ 923 (2158)
-+.|
T Consensus 572 RvEe 575 (1041)
T KOG0948|consen 572 RVEE 575 (1041)
T ss_pred HHcc
Confidence 4443
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=417.98 Aligned_cols=337 Identities=21% Similarity=0.312 Sum_probs=249.9
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc-----CCCceEEEEEcccH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-----ETGVMRAVYIAPLE 1400 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~-----~~~~~~~v~IaP~r 1400 (2158)
|.....+.+.. ||..|+|+|.++|+.++++.+ ++++||||||||++|++|+++.+.... ....+++|||+||+
T Consensus 16 l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~D-vi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTr 94 (572)
T PRK04537 16 LHPALLAGLESAGFTRCTPIQALTLPVALPGGD-VAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTR 94 (572)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCC-EEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcH
Confidence 55566666665 799999999999999998655 999999999999999999999886421 11135999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhh--hcc-cCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccccc
Q 000114 1401 ALAKERYRDWEIKFGQGLGMRVVELTGETAMDL--KLL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1401 aLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~--~~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
+||.|+++.+. .|+...++++..++|+...+. +.+ ..++|||+||++|..++++.. ...++.+++|||||||++.
T Consensus 95 eLa~Qi~~~~~-~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~-~~~l~~v~~lViDEAh~ll 172 (572)
T PRK04537 95 ELAIQIHKDAV-KFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHK-VVSLHACEICVLDEADRMF 172 (572)
T ss_pred HHHHHHHHHHH-HHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhcc-ccchhheeeeEecCHHHHh
Confidence 99999999998 666667899999999877652 223 346999999999988876532 2357889999999999987
Q ss_pred CCCCChHHHHHHHHHHHHhhcCC--CceEEEeccCCCCh-HHH-HHHhccCCCceEecCCCCcccccEEEEecccccchH
Q 000114 1478 GQGGPVLEVIVSRMRYIASQVEN--KIRIVALSTSLANA-KDL-GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFE 1553 (2158)
Q Consensus 1478 ~~~g~~~e~~isrl~~i~~~~~~--~~riV~lSATl~n~-~dl-~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~ 1553 (2158)
+.. +...+..+...++. ..|++++|||+++. ..+ ..++... ..+...........+...+.. ....
T Consensus 173 d~g------f~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p-~~i~v~~~~~~~~~i~q~~~~---~~~~ 242 (572)
T PRK04537 173 DLG------FIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEP-EKLVVETETITAARVRQRIYF---PADE 242 (572)
T ss_pred hcc------hHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCC-cEEEeccccccccceeEEEEe---cCHH
Confidence 654 34444455544443 67999999999762 233 2333322 122211111111112211111 1111
Q ss_pred HHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhc
Q 000114 1554 ARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (2158)
Q Consensus 1554 ~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (2158)
... ..+..+... ..+.++||||+|++.|+.++..|.. .+
T Consensus 243 ~k~-----~~L~~ll~~-~~~~k~LVF~nt~~~ae~l~~~L~~-----------------------------------~g 281 (572)
T PRK04537 243 EKQ-----TLLLGLLSR-SEGARTMVFVNTKAFVERVARTLER-----------------------------------HG 281 (572)
T ss_pred HHH-----HHHHHHHhc-ccCCcEEEEeCCHHHHHHHHHHHHH-----------------------------------cC
Confidence 111 111222222 4577899999999999999876632 23
Q ss_pred ccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCC
Q 000114 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRP 1713 (2158)
Q Consensus 1634 ~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~ 1713 (2158)
..+..+||+|+..+|..+++.|++|+++|||||+++++|||+|++.+|| |++.|.++.+|+||+|||||.
T Consensus 282 ~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VI----------nyd~P~s~~~yvqRiGRaGR~ 351 (572)
T PRK04537 282 YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVY----------NYDLPFDAEDYVHRIGRTARL 351 (572)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEE----------EcCCCCCHHHHhhhhcccccC
Confidence 4699999999999999999999999999999999999999999999999 777899999999999999998
Q ss_pred CCCCceEEEEEecCCh
Q 000114 1714 LLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1714 g~d~~G~~iil~~~~~ 1729 (2158)
| ..|.|++|+.+..
T Consensus 352 G--~~G~ai~~~~~~~ 365 (572)
T PRK04537 352 G--EEGDAISFACERY 365 (572)
T ss_pred C--CCceEEEEecHHH
Confidence 7 6789999887654
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=372.17 Aligned_cols=345 Identities=20% Similarity=0.304 Sum_probs=266.7
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|.+|+.+++ .||+.+||+|..+||..+.+.| |+|-||||||||++|++|++..+...... .....+-+|+|+||
T Consensus 13 L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KD-VvveavTGSGKTlAFllP~le~i~rr~~~---~~~~~vgalIIsPT 88 (567)
T KOG0345|consen 13 LSPWLLEALDESGFEKMTPVQAATIPLLLKNKD-VVVEAVTGSGKTLAFLLPMLEIIYRREAK---TPPGQVGALIISPT 88 (567)
T ss_pred ccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCc-eEEEcCCCCCchhhHHHHHHHHHHhhccC---CCccceeEEEecCc
Confidence 458888888 7999999999999998877766 99999999999999999999999543221 12235689999999
Q ss_pred HHHHHHHHHHHHhhccc-CCcEEEEEeCCCccCHhh----hccccEEEcchhHH-HHHHhccCCCccccccceEEeeccc
Q 000114 560 KALVAEVVGNLSNRLQM-YDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~-~gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH 633 (2158)
|+||.|+.+....++.. .++++..++|+.+..... .++++|+|+||+++ |++.+.. ....+..+.++|+||||
T Consensus 89 RELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~-~~l~~rsLe~LVLDEAD 167 (567)
T KOG0345|consen 89 RELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREA-EKLSFRSLEILVLDEAD 167 (567)
T ss_pred HHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchh-hhccccccceEEecchH
Confidence 99999999998887766 578899999997766543 45889999999998 5555544 33446789999999999
Q ss_pred cccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecC----CcccccceeEEEeec
Q 000114 634 LLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDN----SYRPVPLSQQYIGIQ 708 (2158)
Q Consensus 634 ~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~----~~rpv~l~~~~~~~~ 708 (2158)
+|+| ++...++.|++++ +...|.=++|||.. ..+....+..+.+++-+-.. +..|..+...|+.+.
T Consensus 168 rLldmgFe~~~n~ILs~L-------PKQRRTGLFSATq~--~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~ 238 (567)
T KOG0345|consen 168 RLLDMGFEASVNTILSFL-------PKQRRTGLFSATQT--QEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCE 238 (567)
T ss_pred hHhcccHHHHHHHHHHhc-------ccccccccccchhh--HHHHHHHHhhccCceeeeecccccccCchhhcceeeEec
Confidence 9999 7888888888876 55667789999975 55666555554444332221 124555666666554
Q ss_pred cCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcch
Q 000114 709 VKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSND 788 (2158)
Q Consensus 709 ~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 788 (2158)
.. .++..+.++ +.....+++|||.+|...++..+..+....
T Consensus 239 a~---eK~~~lv~~-----L~~~~~kK~iVFF~TCasVeYf~~~~~~~l------------------------------- 279 (567)
T KOG0345|consen 239 AD---EKLSQLVHL-----LNNNKDKKCIVFFPTCASVEYFGKLFSRLL------------------------------- 279 (567)
T ss_pred HH---HHHHHHHHH-----HhccccccEEEEecCcchHHHHHHHHHHHh-------------------------------
Confidence 33 233322222 222446799999999999988887776531
Q ss_pred hhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhh
Q 000114 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (2158)
Q Consensus 789 l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~ 868 (2158)
.+..+...||.|.+..|..++..|++..-.||+||+++|||+|+|++++||+ ||||+ .+..|+||+
T Consensus 280 ----~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ----~DpP~------~~~~FvHR~ 345 (567)
T KOG0345|consen 280 ----KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ----FDPPK------DPSSFVHRC 345 (567)
T ss_pred ----CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEe----cCCCC------ChhHHHhhc
Confidence 1233556699999999999999999988899999999999999999999999 77776 667899999
Q ss_pred cccCCCCCCCccEEEEEcCCCcHHHHH
Q 000114 869 GRAGRPQYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (2158)
||+||.| ..|.++++..+.+..|..
T Consensus 346 GRTaR~g--r~G~Aivfl~p~E~aYve 370 (567)
T KOG0345|consen 346 GRTARAG--REGNAIVFLNPREEAYVE 370 (567)
T ss_pred chhhhcc--CccceEEEecccHHHHHH
Confidence 9999988 789999999996655544
|
|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=378.39 Aligned_cols=370 Identities=21% Similarity=0.285 Sum_probs=271.8
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.++..||.+|+++||.+++++| ++|.|+||||||++|++|+++.+..... ..-+.+++-+|+|+|||+||.|+++.+
T Consensus 155 m~i~~pTsVQkq~IP~lL~grD-~lV~aQTGSGKTLAYllPiVq~Lq~m~~--ki~Rs~G~~ALVivPTREL~~Q~y~~~ 231 (708)
T KOG0348|consen 155 MKISAPTSVQKQAIPVLLEGRD-ALVRAQTGSGKTLAYLLPIVQSLQAMEP--KIQRSDGPYALVIVPTRELALQIYETV 231 (708)
T ss_pred hccCccchHhhcchhhhhcCcc-eEEEcCCCCcccHHHHHHHHHHHHhcCc--cccccCCceEEEEechHHHHHHHHHHH
Confidence 5799999999999999999877 9999999999999999999999876532 223457889999999999999999999
Q ss_pred HhhcccCCc-EEEEEeCCCccCH---hhhccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccccc-CChhhHH
Q 000114 571 SNRLQMYDV-KVRELSGDQTLTR---QQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLE 644 (2158)
Q Consensus 571 ~~~~~~~gi-~v~~l~Gd~~~~~---~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le 644 (2158)
+++++++.. .-+.+.|+..... +..++.+|+|+||+++ |.|..... ..++++++||+||+|.|.+ +++..+.
T Consensus 232 qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~--i~~s~LRwlVlDEaDrlleLGfekdit 309 (708)
T KOG0348|consen 232 QKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKS--IKFSRLRWLVLDEADRLLELGFEKDIT 309 (708)
T ss_pred HHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccch--heeeeeeEEEecchhHHHhccchhhHH
Confidence 999987653 3366666654332 2357899999999997 77766543 5678899999999999999 7888888
Q ss_pred HHHHHHHHHHhh------ccccccEEEEccccCChHHHHHHHhccccCceEEe---------------------------
Q 000114 645 SIVARTVRQIET------TKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYF--------------------------- 691 (2158)
Q Consensus 645 ~iv~r~~~~~~~------~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f--------------------------- 691 (2158)
.|+..+-.+... .++..+-+++||||. +.|.+..+..+..+++.-
T Consensus 310 ~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLt--d~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l 387 (708)
T KOG0348|consen 310 QILKAVHSIQNAECKDPKLPHQLQNMLLSATLT--DGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKL 387 (708)
T ss_pred HHHHHHhhccchhcccccccHHHHhHhhhhhhH--HHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCccccccc
Confidence 888766332111 223467899999997 445555544443333322
Q ss_pred cCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCc
Q 000114 692 DNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDS 771 (2158)
Q Consensus 692 ~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~ 771 (2158)
+..--|-.|.+++..++.+ -++-.+..++...+. .....++|||+++...++.-+..|.........-
T Consensus 388 ~~~~iPeqL~qry~vVPpK---LRLV~Laa~L~~~~k-~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~-------- 455 (708)
T KOG0348|consen 388 DSFAIPEQLLQRYTVVPPK---LRLVALAALLLNKVK-FEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEG-------- 455 (708)
T ss_pred ccccCcHHhhhceEecCCc---hhHHHHHHHHHHHhh-hhhhceeEEEEechhHHHHHHHHHHhhhhccccc--------
Confidence 1111233445555554443 234444444444333 2235589999999999999998887654321100
Q ss_pred hhHHHHHhhhhccCcchhhh-hccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccC
Q 000114 772 VSREILQSHTDMVKSNDLKD-LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYN 850 (2158)
Q Consensus 772 ~~~~~l~~~~~~~~~~~l~~-ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd 850 (2158)
......+..+.. ++...+.-+||+|++++|..+++.|+...-.||.||++++||+|+|.|++||. ||
T Consensus 456 --------~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ----Yd 523 (708)
T KOG0348|consen 456 --------SSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ----YD 523 (708)
T ss_pred --------ccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE----eC
Confidence 000011111111 23344777899999999999999999998899999999999999999999999 88
Q ss_pred CCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHhhcC
Q 000114 851 PEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQ 900 (2158)
Q Consensus 851 ~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~ 900 (2158)
+|. +..+|+||+||+.|.| ..|.+++|..+.|.+ |.+++..
T Consensus 524 ~P~------s~adylHRvGRTARaG--~kG~alLfL~P~Eae-y~~~l~~ 564 (708)
T KOG0348|consen 524 PPF------STADYLHRVGRTARAG--EKGEALLFLLPSEAE-YVNYLKK 564 (708)
T ss_pred CCC------CHHHHHHHhhhhhhcc--CCCceEEEecccHHH-HHHHHHh
Confidence 775 8899999999999998 779999999999888 5444433
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-39 Score=410.07 Aligned_cols=338 Identities=19% Similarity=0.305 Sum_probs=248.0
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|+++....+ .||..|+|+|.++++.++.+.+ ++++||||||||++|++|+++.+.... .+.++||++|+
T Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d-~ii~apTGsGKT~~~~l~~l~~~~~~~--------~~~~~lil~Pt 105 (401)
T PTZ00424 35 LNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYD-TIGQAQSGTGKTATFVIAALQLIDYDL--------NACQALILAPT 105 (401)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHhcCCC--------CCceEEEECCC
Confidence 444444443 5899999999999999988765 899999999999999999998875321 34589999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
++|+.|+.+.+.......++.+..+.|+....... ...++|+|+||+++ +.+.+.. ..++++++|||||+|++
T Consensus 106 ~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~---~~l~~i~lvViDEah~~ 182 (401)
T PTZ00424 106 RELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRH---LRVDDLKLFILDEADEM 182 (401)
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCC---cccccccEEEEecHHHH
Confidence 99999999999988877788888889987654322 34579999999997 4444432 45788999999999998
Q ss_pred cc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEE--ecCCcccccceeEEEeeccCCh
Q 000114 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY--FDNSYRPVPLSQQYIGIQVKKP 712 (2158)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~--f~~~~rpv~l~~~~~~~~~~~~ 712 (2158)
.+ .++..+..++ ...+..+|++++|||+|+ ++..+.......+... .........+.+.++.... .
T Consensus 183 ~~~~~~~~~~~i~-------~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 251 (401)
T PTZ00424 183 LSRGFKGQIYDVF-------KKLPPDVQVALFSATMPN--EILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEK--E 251 (401)
T ss_pred HhcchHHHHHHHH-------hhCCCCcEEEEEEecCCH--HHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecCh--H
Confidence 76 3443333332 234678999999999985 3333222211111111 1111112222233322211 1
Q ss_pred hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhh
Q 000114 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (2158)
Q Consensus 713 ~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l 792 (2158)
......+. .+.......++||||+|++.+..++..|...+
T Consensus 252 ~~~~~~l~-----~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~----------------------------------- 291 (401)
T PTZ00424 252 EWKFDTLC-----DLYETLTITQAIIYCNTRRKVDYLTKKMHERD----------------------------------- 291 (401)
T ss_pred HHHHHHHH-----HHHHhcCCCeEEEEecCcHHHHHHHHHHHHCC-----------------------------------
Confidence 11111111 22233346789999999999999988876532
Q ss_pred ccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccC
Q 000114 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2158)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2158)
.++..+||+|+..+|..+++.|++|+++|||||+++++|||+|++++||+ |+++. |..+|+||+||||
T Consensus 292 --~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~----~~~p~------s~~~y~qr~GRag 359 (401)
T PTZ00424 292 --FTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN----YDLPA------SPENYIHRIGRSG 359 (401)
T ss_pred --CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE----ECCCC------CHHHEeecccccc
Confidence 35788999999999999999999999999999999999999999999999 66554 7889999999999
Q ss_pred CCCCCCccEEEEEcCCCcHHHHHH
Q 000114 873 RPQYDSYGEGIIITGHSELRYYLS 896 (2158)
Q Consensus 873 R~g~d~~G~~iil~~~~~~~~y~~ 896 (2158)
|.| ..|.|++++++.+...+..
T Consensus 360 R~g--~~G~~i~l~~~~~~~~~~~ 381 (401)
T PTZ00424 360 RFG--RKGVAINFVTPDDIEQLKE 381 (401)
T ss_pred cCC--CCceEEEEEcHHHHHHHHH
Confidence 987 6799999999888776654
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=406.89 Aligned_cols=344 Identities=17% Similarity=0.264 Sum_probs=251.4
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
.+.+..++.++. ||..|+|+|.++++.++++.+ ++++||||||||++|++|+++.+...... .++||++|+++|+.
T Consensus 34 ~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d-~ii~apTGsGKT~~~~l~~l~~~~~~~~~--~~~lil~Pt~~L~~ 110 (401)
T PTZ00424 34 KLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYD-TIGQAQSGTGKTATFVIAALQLIDYDLNA--CQALILAPTRELAQ 110 (401)
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHhcCCCCC--ceEEEECCCHHHHH
Confidence 466677888887 799999999999999998655 99999999999999999999888653233 38999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcchh--hh-cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCC
Q 000114 1405 ERYRDWEIKFGQGLGMRVVELTGETAMD--LK-LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~ltG~~~~~--~~-~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g 1481 (2158)
|+.+.+. .++...+..+..+.|+.... .. ....++|+|+||+++..++++ ....+++++++||||+|++.+..
T Consensus 111 Q~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~--~~~~l~~i~lvViDEah~~~~~~- 186 (401)
T PTZ00424 111 QIQKVVL-ALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK--RHLRVDDLKLFILDEADEMLSRG- 186 (401)
T ss_pred HHHHHHH-HHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh--CCcccccccEEEEecHHHHHhcc-
Confidence 9999888 55555677888888876543 22 233469999999999877765 23468899999999999987543
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcC
Q 000114 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (2158)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~ 1560 (2158)
+...+..+..+++...|++++|||+++. .++...+...+..+...........+........... ..
T Consensus 187 -----~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----- 254 (401)
T PTZ00424 187 -----FKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEE--WK----- 254 (401)
T ss_pred -----hHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHH--HH-----
Confidence 1122333444557789999999999873 2333222222211211111111111122211111100 00
Q ss_pred hHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEec
Q 000114 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2158)
Q Consensus 1561 k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H 1640 (2158)
......+... ....++||||+|++.|+.++..|.. .+.++..+|
T Consensus 255 ~~~l~~~~~~-~~~~~~ivF~~t~~~~~~l~~~l~~-----------------------------------~~~~~~~~h 298 (401)
T PTZ00424 255 FDTLCDLYET-LTITQAIIYCNTRRKVDYLTKKMHE-----------------------------------RDFTVSCMH 298 (401)
T ss_pred HHHHHHHHHh-cCCCeEEEEecCcHHHHHHHHHHHH-----------------------------------CCCcEEEEe
Confidence 0111222222 3456899999999999888865521 245689999
Q ss_pred CCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceE
Q 000114 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2158)
Q Consensus 1641 ~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~ 1720 (2158)
|+|+..+|..+++.|++|+++|||||+++++|+|+|++.+|| ++..|.+..+|+||+|||||.| ..|.
T Consensus 299 ~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI----------~~~~p~s~~~y~qr~GRagR~g--~~G~ 366 (401)
T PTZ00424 299 GDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVI----------NYDLPASPENYIHRIGRSGRFG--RKGV 366 (401)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEE----------EECCCCCHHHEeecccccccCC--CCce
Confidence 999999999999999999999999999999999999999999 5667889999999999999986 6899
Q ss_pred EEEEecCChHHHHHHH
Q 000114 1721 CVILCHAPRKEYYKKF 1736 (2158)
Q Consensus 1721 ~iil~~~~~~~~~~k~ 1736 (2158)
|++++.+.+.++++++
T Consensus 367 ~i~l~~~~~~~~~~~~ 382 (401)
T PTZ00424 367 AINFVTPDDIEQLKEI 382 (401)
T ss_pred EEEEEcHHHHHHHHHH
Confidence 9999988877766654
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=363.70 Aligned_cols=343 Identities=19% Similarity=0.310 Sum_probs=269.7
Q ss_pred cCCCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEE
Q 000114 479 ISEMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYV 556 (2158)
Q Consensus 479 i~~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~i 556 (2158)
...|.+|+-+.+ .|++++||+|..|||.+++|.+ +|-||.||||||.+|.+||++.+..++ .+.-++++
T Consensus 11 ~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrd-cig~AkTGsGKT~AFaLPil~rLsedP--------~giFalvl 81 (442)
T KOG0340|consen 11 ILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRD-CIGCAKTGSGKTAAFALPILNRLSEDP--------YGIFALVL 81 (442)
T ss_pred hcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccc-cccccccCCCcchhhhHHHHHhhccCC--------CcceEEEe
Confidence 345678888777 6899999999999999999977 999999999999999999999998865 34579999
Q ss_pred cccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCC-CccccccceEEeec
Q 000114 557 APMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGD-RTYTQLVKLLIIDE 631 (2158)
Q Consensus 557 aP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~-~~~l~~v~lIIiDE 631 (2158)
.|||+|+-|+.+.|....+.+++++..+.|+++.-.+. ...+|++|+|||++ +.+...... ...+++++++|+||
T Consensus 82 TPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDE 161 (442)
T KOG0340|consen 82 TPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDE 161 (442)
T ss_pred cchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecc
Confidence 99999999999999999999999999999998754433 46899999999998 555444222 34578899999999
Q ss_pred cccccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCccc----ccceeEEEe
Q 000114 632 IHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRP----VPLSQQYIG 706 (2158)
Q Consensus 632 aH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rp----v~l~~~~~~ 706 (2158)
|+.+.+ .+...++.+.. ..+...|.++||||+. +.+....++....+..++....-. -.|.+.++.
T Consensus 162 ADrvL~~~f~d~L~~i~e-------~lP~~RQtLlfSATit--d~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~ 232 (442)
T KOG0340|consen 162 ADRVLAGCFPDILEGIEE-------CLPKPRQTLLFSATIT--DTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYIL 232 (442)
T ss_pred hhhhhccchhhHHhhhhc-------cCCCccceEEEEeehh--hHHHHhhcCCcccccceEEeccCCCCchhhhhhheee
Confidence 999887 46666665544 2456679999999997 356666666544433444333332 245566665
Q ss_pred eccCChhHHHHHhhHHHHHHHHHHh--CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhcc
Q 000114 707 IQVKKPLQRFQLMNDLCYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMV 784 (2158)
Q Consensus 707 ~~~~~~~~~~~~l~~~~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 784 (2158)
+..... +..++..+.... ..+.++|||++..+|+.++..|......
T Consensus 233 ~~~~vk-------daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r------------------------- 280 (442)
T KOG0340|consen 233 VSIDVK-------DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVR------------------------- 280 (442)
T ss_pred cchhhh-------HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhcee-------------------------
Confidence 444321 112233332222 3678999999999999999998875433
Q ss_pred CcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHH
Q 000114 785 KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (2158)
Q Consensus 785 ~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2158)
++..|+.|++.+|...+.+|+++.++|||||++++||+|+|.|.+|||++.|-| +-+|
T Consensus 281 ------------~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~----------P~~y 338 (442)
T KOG0340|consen 281 ------------VVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRD----------PKDY 338 (442)
T ss_pred ------------eeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCC----------HHHH
Confidence 455699999999999999999999999999999999999999999999555554 4579
Q ss_pred HHhhcccCCCCCCCccEEEEEcCCCcHHHHH
Q 000114 865 MQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (2158)
+||+||+.|+| ..|.++.|+++.+.+.+.
T Consensus 339 iHRvGRtARAG--R~G~aiSivt~rDv~l~~ 367 (442)
T KOG0340|consen 339 IHRVGRTARAG--RKGMAISIVTQRDVELLQ 367 (442)
T ss_pred HHhhcchhccc--CCcceEEEechhhHHHHH
Confidence 99999999998 779999999987766554
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=378.84 Aligned_cols=345 Identities=20% Similarity=0.288 Sum_probs=277.6
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.+|..++.+|+++|+.++.|.+ +|..|-||||||++|+.|+|+.+...++. ..++.-+|+|+|||+||.|++..+
T Consensus 87 ~~fv~~teiQ~~~Ip~aL~G~D-vlGAAkTGSGKTLAFlvPvlE~L~r~kWs----~~DGlGalIISPTRELA~QtFevL 161 (758)
T KOG0343|consen 87 AKFVKMTEIQRDTIPMALQGHD-VLGAAKTGSGKTLAFLVPVLEALYRLKWS----PTDGLGALIISPTRELALQTFEVL 161 (758)
T ss_pred cCCccHHHHHHhhcchhccCcc-cccccccCCCceeeehHHHHHHHHHcCCC----CCCCceeEEecchHHHHHHHHHHH
Confidence 5799999999999999999987 99999999999999999999999876543 346788999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHh--hhccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccccc-CChhhHHHH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESI 646 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~i 646 (2158)
.+..+..+++.+.+.|+...... .+.+.+|+||||+++ ..+-.... ....++.++|+|||++++| ++..+++.|
T Consensus 162 ~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~--f~t~~lQmLvLDEADR~LDMGFk~tL~~I 239 (758)
T KOG0343|consen 162 NKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPN--FSTSNLQMLVLDEADRMLDMGFKKTLNAI 239 (758)
T ss_pred HHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCC--CCCCcceEEEeccHHHHHHHhHHHHHHHH
Confidence 99999999999999999876543 467899999999996 44443332 4567789999999999999 788899988
Q ss_pred HHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEec----CCcccccceeEEEeeccCChhHHHHHhhHH
Q 000114 647 VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFD----NSYRPVPLSQQYIGIQVKKPLQRFQLMNDL 722 (2158)
Q Consensus 647 v~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~----~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~ 722 (2158)
+..+ +...|.+++|||-. ..++...+..+..+.++-. ..-.|..|.+.|+.+....... .
T Consensus 240 i~~l-------P~~RQTLLFSATqt--~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~-------~ 303 (758)
T KOG0343|consen 240 IENL-------PKKRQTLLFSATQT--KSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKID-------M 303 (758)
T ss_pred HHhC-------Chhheeeeeecccc--hhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHH-------H
Confidence 8755 77889999999965 4566666654444444322 2345778888888776654322 3
Q ss_pred HHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecC
Q 000114 723 CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802 (2158)
Q Consensus 723 ~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHa 802 (2158)
++..+..+. ..++|||++|.+++..++..++..-.. ..+..+||
T Consensus 304 L~sFI~shl-k~K~iVF~SscKqvkf~~e~F~rlrpg-----------------------------------~~l~~L~G 347 (758)
T KOG0343|consen 304 LWSFIKSHL-KKKSIVFLSSCKQVKFLYEAFCRLRPG-----------------------------------IPLLALHG 347 (758)
T ss_pred HHHHHHhcc-ccceEEEEehhhHHHHHHHHHHhcCCC-----------------------------------Cceeeecc
Confidence 344444433 678999999999999999998875322 12345699
Q ss_pred CCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEE
Q 000114 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (2158)
Q Consensus 803 gl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (2158)
+|++..|..|...|-....-||+||++++||+|+|+|++||. +|.|. .+.+|+||+||+.| ++..|++
T Consensus 348 ~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ----~DCPe------dv~tYIHRvGRtAR--~~~~G~s 415 (758)
T KOG0343|consen 348 TMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQ----VDCPE------DVDTYIHRVGRTAR--YKERGES 415 (758)
T ss_pred chhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEE----ecCch------hHHHHHHHhhhhhc--ccCCCce
Confidence 999999999999999999999999999999999999999999 45443 56689999999999 5588999
Q ss_pred EEEcCCCcHHHHHHhhcCC-Ccccc
Q 000114 883 IIITGHSELRYYLSLMNQQ-LPIES 906 (2158)
Q Consensus 883 iil~~~~~~~~y~~ll~~~-~pieS 906 (2158)
+++..+++.+.+...+... +|++.
T Consensus 416 ll~L~psEeE~~l~~Lq~k~I~i~~ 440 (758)
T KOG0343|consen 416 LLMLTPSEEEAMLKKLQKKKIPIKE 440 (758)
T ss_pred EEEEcchhHHHHHHHHHHcCCCHHh
Confidence 9999999977776655443 66654
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=409.88 Aligned_cols=340 Identities=21% Similarity=0.305 Sum_probs=261.6
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhh-cCCCceEEEEEcccHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~-~~~~~~~~v~IaP~raLa~ 1404 (2158)
|....++.+.. ||..|+|||.++++.++.+.+ +++.|+||||||++|.+|+++.+... ..... .+++++|||+||.
T Consensus 36 l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~D-vi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~-~aLil~PTRELA~ 113 (513)
T COG0513 36 LSPELLQALKDLGFEEPTPIQLAAIPLILAGRD-VLGQAQTGTGKTAAFLLPLLQKILKSVERKYV-SALILAPTRELAV 113 (513)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCC-EEEECCCCChHHHHHHHHHHHHHhcccccCCC-ceEEECCCHHHHH
Confidence 55667777776 899999999999999999755 99999999999999999999998742 22221 2999999999999
Q ss_pred HHHHHHHHHhcCCC-CcEEEEEcCCcchhh--hccc-CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCC
Q 000114 1405 ERYRDWEIKFGQGL-GMRVVELTGETAMDL--KLLE-KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~-g~~v~~ltG~~~~~~--~~l~-~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~ 1480 (2158)
|+++.+. .++... ++++..++|+.+... ..+. .++|||+||+++.+++.+- ...++++.++|+||||.+++.+
T Consensus 114 Qi~~~~~-~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~--~l~l~~v~~lVlDEADrmLd~G 190 (513)
T COG0513 114 QIAEELR-KLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG--KLDLSGVETLVLDEADRMLDMG 190 (513)
T ss_pred HHHHHHH-HHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC--CcchhhcCEEEeccHhhhhcCC
Confidence 9999999 677776 789999999987652 3333 3799999999999998873 5678999999999999999885
Q ss_pred CChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhc---cCCCceEecCCCC--cccccEEEEecccccchHHH
Q 000114 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIG---ATSHGLFNFPPGV--RPVPLEIHIQGVDITNFEAR 1555 (2158)
Q Consensus 1481 g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~---~~~~~i~~f~~~~--rpv~l~~~i~~~~~~~~~~~ 1555 (2158)
+...+..|...++.+.|++++|||+++. +..|.. ..+..+....... .+..+...+....... .+
T Consensus 191 ------f~~~i~~I~~~~p~~~qtllfSAT~~~~--i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~--~k 260 (513)
T COG0513 191 ------FIDDIEKILKALPPDRQTLLFSATMPDD--IRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE--EK 260 (513)
T ss_pred ------CHHHHHHHHHhCCcccEEEEEecCCCHH--HHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH--HH
Confidence 6777777777888899999999999872 333322 2222122111111 1222233222222111 11
Q ss_pred HHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhccc
Q 000114 1556 MQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHG 1635 (2158)
Q Consensus 1556 ~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~g 1635 (2158)
. .....+... ....++||||+|++.|..++..|.. .++.
T Consensus 261 ~-----~~L~~ll~~-~~~~~~IVF~~tk~~~~~l~~~l~~-----------------------------------~g~~ 299 (513)
T COG0513 261 L-----ELLLKLLKD-EDEGRVIVFVRTKRLVEELAESLRK-----------------------------------RGFK 299 (513)
T ss_pred H-----HHHHHHHhc-CCCCeEEEEeCcHHHHHHHHHHHHH-----------------------------------CCCe
Confidence 1 111222222 2344699999999999998866632 3456
Q ss_pred EEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCC
Q 000114 1636 VGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLL 1715 (2158)
Q Consensus 1636 v~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~ 1715 (2158)
+..+||+|++++|..+++.|++|..+|||||++++||||+|.+.+|| |++.|.+..+|+||+||+||.|
T Consensus 300 ~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vi----------nyD~p~~~e~yvHRiGRTgRaG- 368 (513)
T COG0513 300 VAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVI----------NYDLPLDPEDYVHRIGRTGRAG- 368 (513)
T ss_pred EEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeE----------EccCCCCHHHheeccCccccCC-
Confidence 99999999999999999999999999999999999999999999999 8888999999999999999998
Q ss_pred CCceEEEEEecCC-hHHHHH
Q 000114 1716 DNSGKCVILCHAP-RKEYYK 1734 (2158)
Q Consensus 1716 d~~G~~iil~~~~-~~~~~~ 1734 (2158)
..|.++.|+.+. +...+.
T Consensus 369 -~~G~ai~fv~~~~e~~~l~ 387 (513)
T COG0513 369 -RKGVAISFVTEEEEVKKLK 387 (513)
T ss_pred -CCCeEEEEeCcHHHHHHHH
Confidence 899999999874 433333
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=362.88 Aligned_cols=332 Identities=21% Similarity=0.301 Sum_probs=271.4
Q ss_pred ChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000114 483 PEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2158)
Q Consensus 483 p~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ka 561 (2158)
++.+..+| .||+.|.|+|.++||.++.|.+ +|+-|..|+|||.+|.+|+|..+.... ...++++++|||+
T Consensus 94 r~LLmgIfe~G~ekPSPiQeesIPiaLtGrd-iLaRaKNGTGKT~a~~IP~Lekid~~~--------~~IQ~~ilVPtre 164 (459)
T KOG0326|consen 94 RELLMGIFEKGFEKPSPIQEESIPIALTGRD-ILARAKNGTGKTAAYCIPVLEKIDPKK--------NVIQAIILVPTRE 164 (459)
T ss_pred HHHHHHHHHhccCCCCCccccccceeecchh-hhhhccCCCCCccceechhhhhcCccc--------cceeEEEEeecch
Confidence 45566677 8999999999999999998866 999999999999999999999886542 4568999999999
Q ss_pred HHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccccc
Q 000114 562 LVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2158)
Q Consensus 562 La~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d 637 (2158)
||-|+.+.+.++.+.+|++|...+|++++.+.. ....+++|+||+++ |...+.- ..+++..++|+|||+.|++
T Consensus 165 lALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgV---a~ls~c~~lV~DEADKlLs 241 (459)
T KOG0326|consen 165 LALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGV---ADLSDCVILVMDEADKLLS 241 (459)
T ss_pred hhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhccc---ccchhceEEEechhhhhhc
Confidence 999999999999999999999999999987754 34779999999997 5554443 4678899999999999988
Q ss_pred -CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCc-eEEecCCcccccceeEEEeeccCChhHH
Q 000114 638 -NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG-LFYFDNSYRPVPLSQQYIGIQVKKPLQR 715 (2158)
Q Consensus 638 -~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~-~~~f~~~~rpv~l~~~~~~~~~~~~~~~ 715 (2158)
++++.++.++..+ ++..|++++|||.|. .|..|....+.++ ..+.-....+..+.+.|-.+.+. .+
T Consensus 242 ~~F~~~~e~li~~l-------P~~rQillySATFP~--tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~---qK 309 (459)
T KOG0326|consen 242 VDFQPIVEKLISFL-------PKERQILLYSATFPL--TVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEER---QK 309 (459)
T ss_pred hhhhhHHHHHHHhC-------CccceeeEEecccch--hHHHHHHHhccCcceeehhhhhhhcchhhheeeechh---hh
Confidence 7999999887754 788999999999994 5777776554433 33344444555555555544443 23
Q ss_pred HHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccC
Q 000114 716 FQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPY 795 (2158)
Q Consensus 716 ~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~ 795 (2158)
... ...+...+.-.|.||||||.+.++-+|+.+.+.|+++
T Consensus 310 vhC-----LntLfskLqINQsIIFCNS~~rVELLAkKITelGysc----------------------------------- 349 (459)
T KOG0326|consen 310 VHC-----LNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSC----------------------------------- 349 (459)
T ss_pred hhh-----HHHHHHHhcccceEEEeccchHhHHHHHHHHhccchh-----------------------------------
Confidence 333 3334444557899999999999999999999877654
Q ss_pred CeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCC
Q 000114 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875 (2158)
Q Consensus 796 gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g 875 (2158)
.+.|+.|.+++|+.|+..|++|.++.||||+.+.||||+++++|||| ||.++ +...|+||+||+||-|
T Consensus 350 --yyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN----FDfpk------~aEtYLHRIGRsGRFG 417 (459)
T KOG0326|consen 350 --YYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN----FDFPK------NAETYLHRIGRSGRFG 417 (459)
T ss_pred --hHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe----cCCCC------CHHHHHHHccCCccCC
Confidence 34499999999999999999999999999999999999999999999 77666 6778999999999955
Q ss_pred CCCccEEEEEcCCCcHH
Q 000114 876 YDSYGEGIIITGHSELR 892 (2158)
Q Consensus 876 ~d~~G~~iil~~~~~~~ 892 (2158)
..|.+|-+.+-++..
T Consensus 418 --hlGlAInLityedrf 432 (459)
T KOG0326|consen 418 --HLGLAINLITYEDRF 432 (459)
T ss_pred --CcceEEEEEehhhhh
Confidence 789999887776543
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=404.94 Aligned_cols=342 Identities=19% Similarity=0.273 Sum_probs=252.5
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc--CCCceEEEEEcccHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS--ETGVMRAVYIAPLEALA 1403 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~--~~~~~~~v~IaP~raLa 1403 (2158)
|.....+.+.. ||..|+++|.++++.++++. +++++||||||||++|++|+++++.... ..+.++++|++||++||
T Consensus 8 l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~-d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa 86 (434)
T PRK11192 8 LDESLLEALQDKGYTRPTAIQAEAIPPALDGR-DVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELA 86 (434)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHH
Confidence 33444555544 79999999999999999865 5999999999999999999999886531 12235899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcCCcchhhh---cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCC
Q 000114 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (2158)
Q Consensus 1404 ~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~ 1480 (2158)
.|+++.+. .+....++++..++|+...... ....++|+|+||+++..++.. ....++++++||+||||++.+.+
T Consensus 87 ~Q~~~~~~-~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~--~~~~~~~v~~lViDEah~~l~~~ 163 (434)
T PRK11192 87 MQVADQAR-ELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE--ENFDCRAVETLILDEADRMLDMG 163 (434)
T ss_pred HHHHHHHH-HHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc--CCcCcccCCEEEEECHHHHhCCC
Confidence 99999998 5666678999999998765432 234569999999999887765 23357889999999999998754
Q ss_pred CChHHHHHHHHHHHHhhcCCCceEEEeccCCCC--hHHHHHHhccCCCceEecCCCCccc-ccEEEEecccccchHHHHH
Q 000114 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPV-PLEIHIQGVDITNFEARMQ 1557 (2158)
Q Consensus 1481 g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n--~~dl~~wl~~~~~~i~~f~~~~rpv-~l~~~i~~~~~~~~~~~~~ 1557 (2158)
+...+..+...++...|++++|||++. ..++..++...+..+ ...+..+.. .+...+...+ .....
T Consensus 164 ------~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~i~~~~~~~~--~~~~k-- 232 (434)
T PRK11192 164 ------FAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEV-EAEPSRRERKKIHQWYYRAD--DLEHK-- 232 (434)
T ss_pred ------cHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEE-EecCCcccccCceEEEEEeC--CHHHH--
Confidence 222233333444567899999999974 567777776544322 222222111 1111111111 11111
Q ss_pred hcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEE
Q 000114 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2158)
Q Consensus 1558 ~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~ 1637 (2158)
...+..+... ...+++||||+++..|..++..|.. .+..+.
T Consensus 233 ---~~~l~~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~-----------------------------------~~~~~~ 273 (434)
T PRK11192 233 ---TALLCHLLKQ-PEVTRSIVFVRTRERVHELAGWLRK-----------------------------------AGINCC 273 (434)
T ss_pred ---HHHHHHHHhc-CCCCeEEEEeCChHHHHHHHHHHHh-----------------------------------CCCCEE
Confidence 1112222222 3467899999999999999876632 234589
Q ss_pred EecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCC
Q 000114 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2158)
Q Consensus 1638 ~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~ 1717 (2158)
++||+|+..+|..+++.|++|+++|||||+++++|||+|++.+|| |++.|.+...|+||+|||||.| .
T Consensus 274 ~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI----------~~d~p~s~~~yiqr~GR~gR~g--~ 341 (434)
T PRK11192 274 YLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVI----------NFDMPRSADTYLHRIGRTGRAG--R 341 (434)
T ss_pred EecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEE----------EECCCCCHHHHhhcccccccCC--C
Confidence 999999999999999999999999999999999999999999999 6778889999999999999987 6
Q ss_pred ceEEEEEecCChHHHHH
Q 000114 1718 SGKCVILCHAPRKEYYK 1734 (2158)
Q Consensus 1718 ~G~~iil~~~~~~~~~~ 1734 (2158)
.|.|++++...+...+.
T Consensus 342 ~g~ai~l~~~~d~~~~~ 358 (434)
T PRK11192 342 KGTAISLVEAHDHLLLG 358 (434)
T ss_pred CceEEEEecHHHHHHHH
Confidence 78888888765544433
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=411.89 Aligned_cols=342 Identities=18% Similarity=0.246 Sum_probs=253.6
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
|..+.++.+.. ||.+|+|+|.++++.++.+. ++|+.||||||||++|.+|++..+.... ..+++||++||++||.|
T Consensus 13 L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~-dvl~~ApTGsGKT~af~lpll~~l~~~~--~~~~~LIL~PTreLa~Q 89 (629)
T PRK11634 13 LKAPILEALNDLGYEKPSPIQAECIPHLLNGR-DVLGMAQTGSGKTAAFSLPLLHNLDPEL--KAPQILVLAPTRELAVQ 89 (629)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCCcHHHHHHHHHHHHhhhcc--CCCeEEEEeCcHHHHHH
Confidence 55666777766 89999999999999999865 5999999999999999999998886532 23489999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcchhhh---cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCC
Q 000114 1406 RYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2158)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~ltG~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~ 1482 (2158)
+++.+........++++..++|+.+.+.. ....++|||+||+++..++++ ....++++++||+||||.+++..
T Consensus 90 v~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r--~~l~l~~l~~lVlDEAd~ml~~g-- 165 (629)
T PRK11634 90 VAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR--GTLDLSKLSGLVLDEADEMLRMG-- 165 (629)
T ss_pred HHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcchhhceEEEeccHHHHhhcc--
Confidence 99998854443357899999888765422 223569999999999887765 34468899999999999887654
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcCh
Q 000114 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTK 1561 (2158)
Q Consensus 1483 ~~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k 1561 (2158)
+...+..+...++...|++++|||+++. ..+...+...+..+...........+...+..... ....
T Consensus 166 ----f~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~---~~k~----- 233 (629)
T PRK11634 166 ----FIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWG---MRKN----- 233 (629)
T ss_pred ----cHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEech---hhHH-----
Confidence 3444555556667889999999999873 34444333332222111111111111111111100 0010
Q ss_pred HHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecC
Q 000114 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (2158)
Q Consensus 1562 ~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~ 1641 (2158)
..+..++.. ....++||||+|+..|..++..|.. .++.+..+||
T Consensus 234 ~~L~~~L~~-~~~~~~IVF~~tk~~a~~l~~~L~~-----------------------------------~g~~~~~lhg 277 (629)
T PRK11634 234 EALVRFLEA-EDFDAAIIFVRTKNATLEVAEALER-----------------------------------NGYNSAALNG 277 (629)
T ss_pred HHHHHHHHh-cCCCCEEEEeccHHHHHHHHHHHHh-----------------------------------CCCCEEEeeC
Confidence 111222222 3457899999999999999876632 2456889999
Q ss_pred CCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEE
Q 000114 1642 GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1721 (2158)
Q Consensus 1642 ~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~ 1721 (2158)
+|++.+|..+++.|++|+++|||||+++++|||+|++.+|| +++.|.+..+|+||+|||||.| ..|.|
T Consensus 278 d~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI----------~~d~P~~~e~yvqRiGRtGRaG--r~G~a 345 (629)
T PRK11634 278 DMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVV----------NYDIPMDSESYVHRIGRTGRAG--RAGRA 345 (629)
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEE----------EeCCCCCHHHHHHHhccccCCC--CcceE
Confidence 99999999999999999999999999999999999999999 6778889999999999999987 78999
Q ss_pred EEEecCChHHHHHH
Q 000114 1722 VILCHAPRKEYYKK 1735 (2158)
Q Consensus 1722 iil~~~~~~~~~~k 1735 (2158)
++++.+.+...++.
T Consensus 346 i~~v~~~e~~~l~~ 359 (629)
T PRK11634 346 LLFVENRERRLLRN 359 (629)
T ss_pred EEEechHHHHHHHH
Confidence 99998766544443
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-38 Score=406.11 Aligned_cols=336 Identities=21% Similarity=0.281 Sum_probs=248.9
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCC-----CceEEEEEcccH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASET-----GVMRAVYIAPLE 1400 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~-----~~~~~v~IaP~r 1400 (2158)
|+......+.. ||..|+|+|.++++.+++++ |++++||||||||++|++|++..+.+.... +.+++|||+||+
T Consensus 94 l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~-dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~Ptr 172 (475)
T PRK01297 94 LAPELMHAIHDLGFPYCTPIQAQVLGYTLAGH-DAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTR 172 (475)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcH
Confidence 55566666666 79999999999999999865 599999999999999999999988763211 135899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEcCCcchh--hhcc--cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccc
Q 000114 1401 ALAKERYRDWEIKFGQGLGMRVVELTGETAMD--LKLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476 (2158)
Q Consensus 1401 aLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~--~~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l 1476 (2158)
+|+.|+++.++ .+....++++..++|+...+ .+.+ ..++|+|+||+++..+..+| ...++++++|||||+|.+
T Consensus 173 eLa~Q~~~~~~-~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~--~~~l~~l~~lViDEah~l 249 (475)
T PRK01297 173 ELVVQIAKDAA-ALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG--EVHLDMVEVMVLDEADRM 249 (475)
T ss_pred HHHHHHHHHHH-HhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC--CcccccCceEEechHHHH
Confidence 99999999998 56556688999999976543 2222 34699999999998887765 346889999999999998
Q ss_pred cCCCCChHHHHHHHHHHHHhhcC--CCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCC-cccccEEEEecccccch
Q 000114 1477 GGQGGPVLEVIVSRMRYIASQVE--NKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGV-RPVPLEIHIQGVDITNF 1552 (2158)
Q Consensus 1477 ~~~~g~~~e~~isrl~~i~~~~~--~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~-rpv~l~~~i~~~~~~~~ 1552 (2158)
.+.. +..+++.+..+.+ ...|++++|||+++ ...++.++..... .+...+.. ....+..++........
T Consensus 250 ~~~~------~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~k 322 (475)
T PRK01297 250 LDMG------FIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPA-IVEIEPENVASDTVEQHVYAVAGSDK 322 (475)
T ss_pred Hhcc------cHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCE-EEEeccCcCCCCcccEEEEEecchhH
Confidence 7654 4445555555543 25699999999865 4444444333221 22222211 11112222222111110
Q ss_pred HHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHh
Q 000114 1553 EARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (2158)
Q Consensus 1553 ~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (2158)
. .....+... ....++||||++++.|+.++..|.. .
T Consensus 323 ---~-----~~l~~ll~~-~~~~~~IVF~~s~~~~~~l~~~L~~-----------------------------------~ 358 (475)
T PRK01297 323 ---Y-----KLLYNLVTQ-NPWERVMVFANRKDEVRRIEERLVK-----------------------------------D 358 (475)
T ss_pred ---H-----HHHHHHHHh-cCCCeEEEEeCCHHHHHHHHHHHHH-----------------------------------c
Confidence 0 111112222 3456899999999999988865521 2
Q ss_pred cccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCC
Q 000114 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2158)
Q Consensus 1633 ~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR 1712 (2158)
+..+..+||+++.++|..+++.|++|+++|||||+++++|||+|++.+|| ++..|.++.+|+||+|||||
T Consensus 359 ~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI----------~~~~P~s~~~y~Qr~GRaGR 428 (475)
T PRK01297 359 GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVI----------NFTLPEDPDDYVHRIGRTGR 428 (475)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEE----------EeCCCCCHHHHHHhhCccCC
Confidence 34588999999999999999999999999999999999999999999999 67788899999999999999
Q ss_pred CCCCCceEEEEEecCCh
Q 000114 1713 PLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1713 ~g~d~~G~~iil~~~~~ 1729 (2158)
.| ..|.++++..+.+
T Consensus 429 ~g--~~g~~i~~~~~~d 443 (475)
T PRK01297 429 AG--ASGVSISFAGEDD 443 (475)
T ss_pred CC--CCceEEEEecHHH
Confidence 87 6788888887664
|
|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=370.77 Aligned_cols=350 Identities=18% Similarity=0.196 Sum_probs=268.5
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc--CCCceEEEEEcccHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS--ETGVMRAVYIAPLEALA 1403 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~--~~~~~~~v~IaP~raLa 1403 (2158)
|....+.++.. ||..+|++|..+++.++.+.+ +++.|.||||||++|++|+++.+.+.. +..+..+++|+|||+||
T Consensus 89 LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkD-vl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA 167 (543)
T KOG0342|consen 89 LSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKD-VLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELA 167 (543)
T ss_pred cCHHHHHHHHhcCccchhHHHHhhcCccCCCcc-ceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHH
Confidence 33444566665 899999999999999999775 999999999999999999999988753 23346899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcCCcchh---hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCC
Q 000114 1404 KERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (2158)
Q Consensus 1404 ~q~~~~~~~~f~~~~g~~v~~ltG~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~ 1480 (2158)
.|++.+.++.+....++.|+.+.|+.... .+....++|+|+||+++.+++.+... ...++++++|+||||++++.+
T Consensus 168 ~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~-f~~r~~k~lvlDEADrlLd~G 246 (543)
T KOG0342|consen 168 MQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG-FLFRNLKCLVLDEADRLLDIG 246 (543)
T ss_pred HHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc-chhhccceeEeecchhhhhcc
Confidence 99999999776655588999999988764 33444669999999999999988654 456778999999999999877
Q ss_pred CChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhc
Q 000114 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAM 1559 (2158)
Q Consensus 1481 g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~ 1559 (2158)
+-..|..|...++...|..++|||.+. .++++.-.-......++......+...+..-+++-......++
T Consensus 247 ------F~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f--- 317 (543)
T KOG0342|consen 247 ------FEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRF--- 317 (543)
T ss_pred ------cHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchH---
Confidence 666677777778899999999999987 5677664433323333433333332222222222221111111
Q ss_pred ChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEe
Q 000114 1560 TKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYL 1639 (2158)
Q Consensus 1560 ~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~ 1639 (2158)
-..+..+.++ ....++||||+|...+...+..|. .+...|.-+
T Consensus 318 -~ll~~~LKk~-~~~~KiiVF~sT~~~vk~~~~lL~-----------------------------------~~dlpv~ei 360 (543)
T KOG0342|consen 318 -SLLYTFLKKN-IKRYKIIVFFSTCMSVKFHAELLN-----------------------------------YIDLPVLEI 360 (543)
T ss_pred -HHHHHHHHHh-cCCceEEEEechhhHHHHHHHHHh-----------------------------------hcCCchhhh
Confidence 1233444444 334889999999999988885542 244568889
Q ss_pred cCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCce
Q 000114 1640 HEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSG 1719 (2158)
Q Consensus 1640 H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G 1719 (2158)
||++++..|..+...|++.+.-|||||+++|||+|+|++.+|| .++.|-...+|+||+||+||.| +.|
T Consensus 361 Hgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~Vv----------Q~~~P~d~~~YIHRvGRTaR~g--k~G 428 (543)
T KOG0342|consen 361 HGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVV----------QYDPPSDPEQYIHRVGRTAREG--KEG 428 (543)
T ss_pred hcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEE----------EeCCCCCHHHHHHHhccccccC--CCc
Confidence 9999999999999999999999999999999999999999999 3455667999999999999976 899
Q ss_pred EEEEEecCChHHHHHHH
Q 000114 1720 KCVILCHAPRKEYYKKF 1736 (2158)
Q Consensus 1720 ~~iil~~~~~~~~~~k~ 1736 (2158)
.++++..+.+..|+..+
T Consensus 429 ~alL~l~p~El~Flr~L 445 (543)
T KOG0342|consen 429 KALLLLAPWELGFLRYL 445 (543)
T ss_pred eEEEEeChhHHHHHHHH
Confidence 99999888776555433
|
|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-39 Score=349.31 Aligned_cols=335 Identities=20% Similarity=0.330 Sum_probs=261.3
Q ss_pred hhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHH
Q 000114 485 WAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563 (2158)
Q Consensus 485 ~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa 563 (2158)
.++.+| -||++|..+|+.|++.++.+++ +++.|..|+|||.+|-+.+++.+.-.. ...++++++|||+|+
T Consensus 38 lLrgiY~yGfekPS~IQqrAi~~IlkGrd-ViaQaqSGTGKTa~~si~vlq~~d~~~--------r~tQ~lilsPTRELa 108 (400)
T KOG0328|consen 38 LLRGIYAYGFEKPSAIQQRAIPQILKGRD-VIAQAQSGTGKTATFSISVLQSLDISV--------RETQALILSPTRELA 108 (400)
T ss_pred HHHHHHHhccCCchHHHhhhhhhhhcccc-eEEEecCCCCceEEEEeeeeeeccccc--------ceeeEEEecChHHHH
Confidence 355566 6999999999999999999876 999999999999999988888765432 346899999999999
Q ss_pred HHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccccc-C
Q 000114 564 AEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2158)
Q Consensus 564 ~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~ 638 (2158)
.|+.+.+..+..++++.+..+.|+.+..... ..+.+++.+||++. |++.|+. .....++++|+||++.+++ .
T Consensus 109 ~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~---L~tr~vkmlVLDEaDemL~kg 185 (400)
T KOG0328|consen 109 VQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRS---LRTRAVKMLVLDEADEMLNKG 185 (400)
T ss_pred HHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcc---ccccceeEEEeccHHHHHHhh
Confidence 9999999999999999999999998865432 24789999999996 7777766 3567899999999998877 5
Q ss_pred ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEec-CCccccc-ceeEEEeeccCChhHHH
Q 000114 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFD-NSYRPVP-LSQQYIGIQVKKPLQRF 716 (2158)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~-~~~rpv~-l~~~~~~~~~~~~~~~~ 716 (2158)
++..+-.+.. ..++..|++++|||+| .++.+-.......++.... ...-+.. +.+.++.+. +...++
T Consensus 186 fk~Qiydiyr-------~lp~~~Qvv~~SATlp--~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve--~EewKf 254 (400)
T KOG0328|consen 186 FKEQIYDIYR-------YLPPGAQVVLVSATLP--HEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVE--KEEWKF 254 (400)
T ss_pred HHHHHHHHHH-------hCCCCceEEEEeccCc--HHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeec--hhhhhH
Confidence 6655554433 4588999999999999 5555544433333322221 1112222 444444433 334455
Q ss_pred HHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCC
Q 000114 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (2158)
Q Consensus 717 ~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~g 796 (2158)
..+.++ |+ .+.-.|++|||||++.+.++.+.+++..+ .
T Consensus 255 dtLcdL-Yd----~LtItQavIFcnTk~kVdwLtekm~~~nf-------------------------------------t 292 (400)
T KOG0328|consen 255 DTLCDL-YD----TLTITQAVIFCNTKRKVDWLTEKMREANF-------------------------------------T 292 (400)
T ss_pred hHHHHH-hh----hhehheEEEEecccchhhHHHHHHHhhCc-------------------------------------e
Confidence 555442 33 33467999999999999998888877542 3
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCC
Q 000114 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (2158)
Q Consensus 797 v~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (2158)
|...||.|++++|..+...|++|+-+||+||++.|||+|+|.+.+||| ||.|. ....|+||+||+||-|
T Consensus 293 VssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviN----YDLP~------nre~YIHRIGRSGRFG- 361 (400)
T KOG0328|consen 293 VSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN----YDLPN------NRELYIHRIGRSGRFG- 361 (400)
T ss_pred eeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEe----cCCCc------cHHHHhhhhccccccC-
Confidence 555699999999999999999999999999999999999999999999 55544 3467999999999954
Q ss_pred CCccEEEEEcCCCcHHHHHH
Q 000114 877 DSYGEGIIITGHSELRYYLS 896 (2158)
Q Consensus 877 d~~G~~iil~~~~~~~~y~~ 896 (2158)
..|.++-++..++...|.+
T Consensus 362 -RkGvainFVk~~d~~~lrd 380 (400)
T KOG0328|consen 362 -RKGVAINFVKSDDLRILRD 380 (400)
T ss_pred -CcceEEEEecHHHHHHHHH
Confidence 8899999999998877664
|
|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=390.44 Aligned_cols=650 Identities=20% Similarity=0.301 Sum_probs=437.3
Q ss_pred CCCCCCHHHHHHHHH--HhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1338 GFKHFNPIQTQVFTV--LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~--l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
|...+..+|.+|+.. ++ .+.|.|.++||+.|||+++++-+++..... .. .++.+.|..+.+.+....+. .|.
T Consensus 220 gi~~~fewq~ecls~~~~~-e~~nliys~Pts~gktlvaeilml~~~l~~--rr--~~llilp~vsiv~Ek~~~l~-~~~ 293 (1008)
T KOG0950|consen 220 GILKLFEWQAECLSLPRLL-ERKNLIYSLPTSAGKTLVAEILMLREVLCR--RR--NVLLILPYVSIVQEKISALS-PFS 293 (1008)
T ss_pred hHHHHHHHHHHHhcchhhh-cccceEEeCCCccchHHHHHHHHHHHHHHH--hh--ceeEecceeehhHHHHhhhh-hhc
Confidence 577889999999854 55 688999999999999999999999887762 33 68999999999999888887 566
Q ss_pred CCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCCChHHHHHHHHHHH
Q 000114 1416 QGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYI 1494 (2158)
Q Consensus 1416 ~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g~~~e~~isrl~~i 1494 (2158)
..+|+.|..+.|..... +..+.-++.|||.|+-..+..+.-....+..+++|||||.|++++ .+|..+|.++..+.+.
T Consensus 294 ~~~G~~ve~y~g~~~p~-~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~ 372 (1008)
T KOG0950|consen 294 IDLGFPVEEYAGRFPPE-KRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYE 372 (1008)
T ss_pred cccCCcchhhcccCCCC-CcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHh
Confidence 66799998888765543 334556899999999988887766666788899999999999998 5799999999999887
Q ss_pred HhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHh---cC-----------
Q 000114 1495 ASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQA---MT----------- 1560 (2158)
Q Consensus 1495 ~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~---~~----------- 1560 (2158)
... ...|+||||||++|..++..|+.+.. +...+||+|+..++..-....-..++.. ..
T Consensus 373 ~~~--~~~~iIGMSATi~N~~lL~~~L~A~~-----y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~d 445 (1008)
T KOG0950|consen 373 NLE--TSVQIIGMSATIPNNSLLQDWLDAFV-----YTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDED 445 (1008)
T ss_pred ccc--cceeEeeeecccCChHHHHHHhhhhh-----eecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCC
Confidence 643 34889999999999999999999553 5677899999877643222211112111 11
Q ss_pred -hHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccC-CCcccchhhH---hhhhHHHHHHHhccc
Q 000114 1561 -KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLL-WPAEEVEPFI---DNIQEEMLKATLRHG 1635 (2158)
Q Consensus 1561 -k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~-~~~~~l~~~~---~~i~d~~L~~~l~~g 1635 (2158)
........+.+.++.++||||++|+.|+.+|..++........... ++. .......... ...-|..++..+.+|
T Consensus 446 pD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~-~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~G 524 (1008)
T KOG0950|consen 446 PDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEK-RLGLWELLSISNLLRRIPGILDPVLAKTIPYG 524 (1008)
T ss_pred CcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhh-hhhHHHHHHHHhHhhcCCcccchHHheecccc
Confidence 0111122233345667999999999999999777654443221111 110 0000011111 112345688899999
Q ss_pred EEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCC
Q 000114 1636 VGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLL 1715 (2158)
Q Consensus 1636 v~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~ 1715 (2158)
++|||+|++.++|+.|+..|+.|.+.|++||+++++|+|+|+.+|||.. +++.+ ...+..+|.||+|||||.|.
T Consensus 525 vAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIira-P~~g~-----~~l~~~~YkQM~GRAGR~gi 598 (1008)
T KOG0950|consen 525 VAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRA-PYVGR-----EFLTRLEYKQMVGRAGRTGI 598 (1008)
T ss_pred ceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeC-Ccccc-----chhhhhhHHhhhhhhhhccc
Confidence 9999999999999999999999999999999999999999999999943 22222 23468899999999999999
Q ss_pred CCceEEEEEecCChHHHHHHHhhCCC-ccccchhhH----HHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCc
Q 000114 1716 DNSGKCVILCHAPRKEYYKKFLYDAF-PVESHLHHF----LHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYY 1790 (2158)
Q Consensus 1716 d~~G~~iil~~~~~~~~~~k~l~~~~-piES~L~~~----l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y 1790 (2158)
|..|.++++|.+.++..+..++..+. |+.|+|... +...+..-|+.+..++.+|...+...|+|+.. .-|.+-
T Consensus 599 dT~GdsiLI~k~~e~~~~~~lv~~~~~~~~S~l~~e~~g~~~~~ilsvI~~~ia~t~~di~~~va~tl~s~q--~~~~~~ 676 (1008)
T KOG0950|consen 599 DTLGDSILIIKSSEKKRVRELVNSPLKPLNSCLSNEVNGPILMAILSLISLKIAETAEDILHFVAVTLLSAQ--EKPENV 676 (1008)
T ss_pred ccCcceEEEeeccchhHHHHHHhccccccccccccccccccceeehhhhcchhhhhHHHHHHHHHHhhhhcc--cchhhh
Confidence 99999999999998887778888654 677887321 22344556677777899999999999998753 122221
Q ss_pred cCC-CC-C-cccHHHHHH-HHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCCCC---HHH
Q 000114 1791 NLQ-GV-S-HRHLSDHLS-ELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTR---MKG 1863 (2158)
Q Consensus 1791 ~~~-~~-~-~~~~~~~l~-~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~---~~~ 1863 (2158)
..+ +. + ...+.++.+ .++++ +.....-+. .....+|++|+.+=.-.+++.-+-.++..|..... +..
T Consensus 677 ~~~le~~s~ql~~~~~~~d~~l~~---d~i~~~~~~---~~~~~~t~Lg~a~f~~~~~~~~a~~l~~~L~~~~~~~vle~ 750 (1008)
T KOG0950|consen 677 REQLEMESDQLVINDFKSDQLLEK---DFIYKKQIE---NLRENITRLGRACFNAGSDPEVANILFADLKKSLPQLVLES 750 (1008)
T ss_pred hhcccchhhhhccchhhHHHHHHH---HHHHhHHHH---hhhhhhhhhhhhhhcccCChhhhHHHHHHHHHhhhcccccc
Confidence 110 00 0 011122221 12211 111111111 11122888888776666776655554443332211 111
Q ss_pred HHHHHhcCcccc---C---------C--CCCcchHHHHHHHh-------hcCccccCCCCC-CCh---HHHHHHHHHHHh
Q 000114 1864 LLEVLASASEYA---Q---------L--PIRPGEEEVVRRLI-------HHQRFSFENPKF-TDP---HVKANALLQAHF 1918 (2158)
Q Consensus 1864 lL~ils~a~Ef~---~---------i--~vR~~E~~~l~~L~-------~~~p~~~~~~~~-~~~---~~K~~lLLqAhl 1918 (2158)
-+++|---.=|. + + .+...++...+.+- +.+.-.. .+.. +-+ ..=+.+.||..+
T Consensus 751 ~lh~lylvtP~~~~~~~~dwli~f~i~~~L~~~~~~~~~~~G~~e~fi~~~~~gqs-~~~~~~~~~~~r~y~~l~L~~li 829 (1008)
T KOG0950|consen 751 SLHLLYLVTPYLEVMNDIDWLIYFQIYHTLPSPEQKLAKLLGVIESFIEKCVSGQS-VRNLQNVQKRKRLYVALALQKLI 829 (1008)
T ss_pred ccceeeeecchHhhcccccHHHHHHHHhcCCcHHHHHHhhhchHHHHHHHhhhccc-cccccchhHHHHHHHHHHHHHHH
Confidence 111111000010 0 0 00111211111110 0000000 0111 112 122556688888
Q ss_pred cCCCCC---CCc---hhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHH
Q 000114 1919 SRQQVG---GNL---KLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKR 1992 (2158)
Q Consensus 1919 sR~~lp---~~l---~~D~~~Il~~~~rLl~a~vdi~~~~g~l~~~l~~m~L~q~i~Q~~w~~~s~L~QLP~~~~~~~~~ 1992 (2158)
+..+++ ..| +.=+...+.++.....+..-.|.+.+|..-..-.-++.+.+.-|.-.+..||.-+|++...+++.
T Consensus 830 ~espi~~V~~kYk~~rg~lqall~~a~~~a~~It~Fce~l~w~~~~~l~~~~~~rl~~g~~~eL~~Lmrv~~~~~~RAr~ 909 (1008)
T KOG0950|consen 830 NESPIRTVAEKYKVERGRLQALLSNASSFASLITFFCESIQWFPLRALLSEFYGRLSFGGHAELIPLMRVPDVKAERARQ 909 (1008)
T ss_pred hhCcHHHHHHHhCchHHHHHHHHhcchhHHHHHHHHHHHhhhcchHHHHHHHHHHHhccchhhhhhhhcCchhHHHHHHH
Confidence 887775 233 55667788889999988888899999974333344677788888888899999999999999999
Q ss_pred HHhCCCCCccCHHHHhcCCHHHHHHHhC
Q 000114 1993 CQENPGKSIETVFDLVEMEDDERRELLQ 2020 (2158)
Q Consensus 1993 l~~~~~~~i~tv~dl~~~~~~~r~~ll~ 2020 (2158)
+...| ++|+.+++...+.+..+-|.
T Consensus 910 lf~Ag---f~tv~~iA~a~p~klvkel~ 934 (1008)
T KOG0950|consen 910 LFKAG---FTSVGSIANATPEKLVKELP 934 (1008)
T ss_pred HHHhh---ccchHHHhcCChHHHHHHhh
Confidence 99999 99999999999888765553
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=363.87 Aligned_cols=348 Identities=19% Similarity=0.260 Sum_probs=261.7
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc---CCCceEEEEEcccHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEAL 1402 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~---~~~~~~~v~IaP~raL 1402 (2158)
|.....+.+-. ||..+||+|..+++.++.+.| |++-||||||||++|++|+++.+.+.. +.+.+.+|||+|||+|
T Consensus 13 L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KD-VvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTREL 91 (567)
T KOG0345|consen 13 LSPWLLEALDESGFEKMTPVQAATIPLLLKNKD-VVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTREL 91 (567)
T ss_pred ccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCc-eEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHH
Confidence 34455555554 799999999999999998666 999999999999999999999994432 2223579999999999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcCCcchh--hhc--ccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC
Q 000114 1403 AKERYRDWEIKFGQGLGMRVVELTGETAMD--LKL--LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2158)
Q Consensus 1403 a~q~~~~~~~~f~~~~g~~v~~ltG~~~~~--~~~--l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~ 1478 (2158)
+.|+.+.......++..+++..++|+.+.. .+. -+.++|+|+||+++.+++++-.....++++.++|+||||.+++
T Consensus 92 a~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLld 171 (567)
T KOG0345|consen 92 ARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLD 171 (567)
T ss_pred HHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhc
Confidence 999999988544554678899999987654 222 2356899999999999998855555678999999999999998
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCC--CcccccEEEEecccccchHHH
Q 000114 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPG--VRPVPLEIHIQGVDITNFEAR 1555 (2158)
Q Consensus 1479 ~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~--~rpv~l~~~i~~~~~~~~~~~ 1555 (2158)
.+ +...+..|.+.+|+..|.=++|||... .+++...--..+..+-.-..+ ..|-.+...+......
T Consensus 172 mg------Fe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~----- 240 (567)
T KOG0345|consen 172 MG------FEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEAD----- 240 (567)
T ss_pred cc------HHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHH-----
Confidence 88 888889999999999999999999865 334443221111111110111 1222222222111110
Q ss_pred HHhcChHHHHHHHHhH--hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhc
Q 000114 1556 MQAMTKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (2158)
Q Consensus 1556 ~~~~~k~~~~~i~~~~--~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (2158)
..+..+...+ ...+++|||.+|...++..+..+..+ ...
T Consensus 241 ------eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~---------------------------------l~~ 281 (567)
T KOG0345|consen 241 ------EKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRL---------------------------------LKK 281 (567)
T ss_pred ------HHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHH---------------------------------hCC
Confidence 1111111111 34688999999999988777555221 123
Q ss_pred ccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCC
Q 000114 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRP 1713 (2158)
Q Consensus 1634 ~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~ 1713 (2158)
..+..+||.|++..|..+++.|++..-.||+||++++||+|+|++.+|| +++.|.....|+||+||+||.
T Consensus 282 ~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~Vv----------Q~DpP~~~~~FvHR~GRTaR~ 351 (567)
T KOG0345|consen 282 REIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVV----------QFDPPKDPSSFVHRCGRTARA 351 (567)
T ss_pred CcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEE----------ecCCCCChhHHHhhcchhhhc
Confidence 4588999999999999999999999999999999999999999999999 556667899999999999999
Q ss_pred CCCCceEEEEEecCChHHHHHHHhh
Q 000114 1714 LLDNSGKCVILCHAPRKEYYKKFLY 1738 (2158)
Q Consensus 1714 g~d~~G~~iil~~~~~~~~~~k~l~ 1738 (2158)
| +.|.|++|..+ +.+.|-.|+.
T Consensus 352 g--r~G~Aivfl~p-~E~aYveFl~ 373 (567)
T KOG0345|consen 352 G--REGNAIVFLNP-REEAYVEFLR 373 (567)
T ss_pred c--CccceEEEecc-cHHHHHHHHH
Confidence 7 89999999988 5567777876
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=407.33 Aligned_cols=336 Identities=18% Similarity=0.259 Sum_probs=249.5
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHH
Q 000114 1330 PLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (2158)
Q Consensus 1330 ~~~~~l~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~ 1409 (2158)
......| |+..|+|+|.++|+.++.+.+ +|+++|||+|||+||++|++.. .+ .+|||+|+++|+.++...
T Consensus 450 ~~lk~~F-G~~sFRp~Q~eaI~aiL~GrD-VLVimPTGSGKSLcYQLPAL~~------~G--iTLVISPLiSLmqDQV~~ 519 (1195)
T PLN03137 450 VNNKKVF-GNHSFRPNQREIINATMSGYD-VFVLMPTGGGKSLTYQLPALIC------PG--ITLVISPLVSLIQDQIMN 519 (1195)
T ss_pred HHHHHHc-CCCCCCHHHHHHHHHHHcCCC-EEEEcCCCccHHHHHHHHHHHc------CC--cEEEEeCHHHHHHHHHHH
Confidence 3445555 499999999999999998655 9999999999999999999842 34 899999999999987776
Q ss_pred HHHHhcCCCCcEEEEEcCCcchhhh-----cc----cCCcEEEeCHHHHH---HHHhhhhccccccceeEEEeccccccc
Q 000114 1410 WEIKFGQGLGMRVVELTGETAMDLK-----LL----EKGQIIISTPEKWD---ALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1410 ~~~~f~~~~g~~v~~ltG~~~~~~~-----~l----~~~~IIV~TPe~l~---~l~r~~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
+.. .|+++..+.|+...... .+ ...+|+++|||++. .+.+..........+++|||||||++.
T Consensus 520 L~~-----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVS 594 (1195)
T PLN03137 520 LLQ-----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVS 594 (1195)
T ss_pred HHh-----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhh
Confidence 652 27888888887654311 11 34699999999985 234332222223558999999999997
Q ss_pred CCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC--hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHH
Q 000114 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEAR 1555 (2158)
Q Consensus 1478 ~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n--~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~ 1555 (2158)
+ +|+.++.-+.++..+...+ ..+++++||||++. .+++...|+.....++. ....|| .+...+... .. ..
T Consensus 595 q-WGhDFRpdYr~L~~Lr~~f-p~vPilALTATAT~~V~eDI~~~L~l~~~~vfr-~Sf~Rp-NL~y~Vv~k--~k--k~ 666 (1195)
T PLN03137 595 Q-WGHDFRPDYQGLGILKQKF-PNIPVLALTATATASVKEDVVQALGLVNCVVFR-QSFNRP-NLWYSVVPK--TK--KC 666 (1195)
T ss_pred h-cccchHHHHHHHHHHHHhC-CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee-cccCcc-ceEEEEecc--ch--hH
Confidence 5 4566766666665555544 36789999999876 45788888765433332 222343 233322211 00 00
Q ss_pred HHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhccc
Q 000114 1556 MQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHG 1635 (2158)
Q Consensus 1556 ~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~g 1635 (2158)
. ......+... ..+.++||||.|++.|+.++..|.. .+..
T Consensus 667 l----e~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~-----------------------------------~Gik 706 (1195)
T PLN03137 667 L----EDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQE-----------------------------------FGHK 706 (1195)
T ss_pred H----HHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHH-----------------------------------CCCC
Confidence 0 1111122221 2356799999999999999976632 3556
Q ss_pred EEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCC
Q 000114 1636 VGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLL 1715 (2158)
Q Consensus 1636 v~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~ 1715 (2158)
+.+|||||++++|..+++.|.+|+++|||||++++||||+|++++|| |+..|.++.+|+||+|||||.|
T Consensus 707 a~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VI----------HydlPkSiEsYyQriGRAGRDG- 775 (1195)
T PLN03137 707 AAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVI----------HHSLPKSIEGYHQECGRAGRDG- 775 (1195)
T ss_pred eeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEE----------EcCCCCCHHHHHhhhcccCCCC-
Confidence 89999999999999999999999999999999999999999999999 8889999999999999999987
Q ss_pred CCceEEEEEecCChHHHHHHHhhCC
Q 000114 1716 DNSGKCVILCHAPRKEYYKKFLYDA 1740 (2158)
Q Consensus 1716 d~~G~~iil~~~~~~~~~~k~l~~~ 1740 (2158)
..|.|++++...+...++.++...
T Consensus 776 -~~g~cILlys~~D~~~~~~lI~~~ 799 (1195)
T PLN03137 776 -QRSSCVLYYSYSDYIRVKHMISQG 799 (1195)
T ss_pred -CCceEEEEecHHHHHHHHHHHhcc
Confidence 689999999887777777777643
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=397.58 Aligned_cols=333 Identities=20% Similarity=0.311 Sum_probs=251.9
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHH
Q 000114 1332 YEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2158)
Q Consensus 1332 ~~~l~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~ 1411 (2158)
+++.| ||..|+|+|.++++.++.++ +++++||||||||+||++|++. ..+ .+|||+|+++|+.|++..+.
T Consensus 3 l~~~~-g~~~~r~~Q~~ai~~~l~g~-dvlv~apTGsGKTl~y~lp~l~------~~~--~~lVi~P~~~L~~dq~~~l~ 72 (470)
T TIGR00614 3 LKTVF-GLSSFRPVQLEVINAVLLGR-DCFVVMPTGGGKSLCYQLPALC------SDG--ITLVISPLISLMEDQVLQLK 72 (470)
T ss_pred hHhhc-CCCCCCHHHHHHHHHHHcCC-CEEEEcCCCCcHhHHHHHHHHH------cCC--cEEEEecHHHHHHHHHHHHH
Confidence 34555 59999999999999999866 5999999999999999999983 234 79999999999999999887
Q ss_pred HHhcCCCCcEEEEEcCCcchhh-----hc--ccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChH
Q 000114 1412 IKFGQGLGMRVVELTGETAMDL-----KL--LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVL 1484 (2158)
Q Consensus 1412 ~~f~~~~g~~v~~ltG~~~~~~-----~~--l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~ 1484 (2158)
. .|+.+..++|+..... .. ....+|+++|||++....+.+.......++++|||||||++++ +|+.+
T Consensus 73 ~-----~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~-~g~~f 146 (470)
T TIGR00614 73 A-----SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQ-WGHDF 146 (470)
T ss_pred H-----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCc-ccccc
Confidence 3 2678888888766441 11 1245899999999754322111111467899999999999975 46677
Q ss_pred HHHHHHHHHHHhhcCCCceEEEeccCCCCh--HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChH
Q 000114 1485 EVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKP 1562 (2158)
Q Consensus 1485 e~~isrl~~i~~~~~~~~riV~lSATl~n~--~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~ 1562 (2158)
+..+.++..+.... ++.+++++|||+++. .++..+++.....++.... .|| .+...+..... . . ...
T Consensus 147 r~~~~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~-~r~-nl~~~v~~~~~-~---~----~~~ 215 (470)
T TIGR00614 147 RPDYKALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSF-DRP-NLYYEVRRKTP-K---I----LED 215 (470)
T ss_pred HHHHHHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCC-CCC-CcEEEEEeCCc-c---H----HHH
Confidence 77777776666554 478899999999873 6788888876544443322 222 22222221110 0 0 011
Q ss_pred HHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCC
Q 000114 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (2158)
Q Consensus 1563 ~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~ 1642 (2158)
....+... .+++.+||||+|++.|+.++..|.. .+..+..|||+
T Consensus 216 l~~~l~~~-~~~~~~IIF~~s~~~~e~la~~L~~-----------------------------------~g~~~~~~H~~ 259 (470)
T TIGR00614 216 LLRFIRKE-FKGKSGIIYCPSRKKSEQVTASLQN-----------------------------------LGIAAGAYHAG 259 (470)
T ss_pred HHHHHHHh-cCCCceEEEECcHHHHHHHHHHHHh-----------------------------------cCCCeeEeeCC
Confidence 12222222 4566779999999999999976632 24568899999
Q ss_pred CCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEE
Q 000114 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2158)
Q Consensus 1643 l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~i 1722 (2158)
|+.++|..+++.|++|.++|||||+++++|||+|++++|| |+..|.++.+|+||+|||||.| ..|.|+
T Consensus 260 l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI----------~~~~P~s~~~y~Qr~GRaGR~G--~~~~~~ 327 (470)
T TIGR00614 260 LEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVI----------HYSLPKSMESYYQESGRAGRDG--LPSECH 327 (470)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEE----------EeCCCCCHHHHHhhhcCcCCCC--CCceEE
Confidence 9999999999999999999999999999999999999999 7778889999999999999987 689999
Q ss_pred EEecCChHHHHHHHhhC
Q 000114 1723 ILCHAPRKEYYKKFLYD 1739 (2158)
Q Consensus 1723 il~~~~~~~~~~k~l~~ 1739 (2158)
+++...+...+++++.+
T Consensus 328 ~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 328 LFYAPADINRLRRLLME 344 (470)
T ss_pred EEechhHHHHHHHHHhc
Confidence 99999888888877764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=382.44 Aligned_cols=388 Identities=26% Similarity=0.430 Sum_probs=299.9
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
++-|+|++++.++ ..+++|+|+|.|.+|||++|+.||...+.. +. |+||.+|-+||.+|.|+++...|+.
T Consensus 129 ~LDpFQ~~aI~Ci-dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---kQ--RVIYTSPIKALSNQKYREl~~EF~D---- 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCI-DRGESVLVSAHTSAGKTVVAEYAIAMSLRE---KQ--RVIYTSPIKALSNQKYRELLEEFKD---- 198 (1041)
T ss_pred ccCchHhhhhhhh-cCCceEEEEeecCCCcchHHHHHHHHHHHh---cC--eEEeeChhhhhcchhHHHHHHHhcc----
Confidence 6899999999888 457789999999999999999999988877 44 9999999999999999999999974
Q ss_pred EEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCCChHHHHHHHHHHHHhhcC
Q 000114 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVE 1499 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g~~~e~~isrl~~i~~~~~ 1499 (2158)
|+..|||.+.+ ..+.-+|+|.|.+-+++-+ +...++.|.+||+||+|.+-+ +||-+||..+- .++
T Consensus 199 -VGLMTGDVTIn----P~ASCLVMTTEILRsMLYR--GSEvmrEVaWVIFDEIHYMRDkERGVVWEETII-------llP 264 (1041)
T KOG0948|consen 199 -VGLMTGDVTIN----PDASCLVMTTEILRSMLYR--GSEVMREVAWVIFDEIHYMRDKERGVVWEETII-------LLP 264 (1041)
T ss_pred -cceeecceeeC----CCCceeeeHHHHHHHHHhc--cchHhheeeeEEeeeehhccccccceeeeeeEE-------ecc
Confidence 88899998866 4568999999999887755 566789999999999999988 68999987542 248
Q ss_pred CCceEEEeccCCCChHHHHHHhccC-CCceEecCCCCcccccEEEEec---------------ccccchHHHHHhcCh--
Q 000114 1500 NKIRIVALSTSLANAKDLGEWIGAT-SHGLFNFPPGVRPVPLEIHIQG---------------VDITNFEARMQAMTK-- 1561 (2158)
Q Consensus 1500 ~~~riV~lSATl~n~~dl~~wl~~~-~~~i~~f~~~~rpv~l~~~i~~---------------~~~~~~~~~~~~~~k-- 1561 (2158)
.++|.|+||||+||+.++|+|+..- ...+.....++||.|++-++.+ |...++...+..+.+
T Consensus 265 ~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~ 344 (1041)
T KOG0948|consen 265 DNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAG 344 (1041)
T ss_pred ccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccC
Confidence 8999999999999999999998543 2334455678999999877533 112223332222111
Q ss_pred -------------------------HHHHHHHHhH-hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCccc
Q 000114 1562 -------------------------PTFTAIVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEE 1615 (2158)
Q Consensus 1562 -------------------------~~~~~i~~~~-~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~ 1615 (2158)
..|..+.-.. ....|+|||+-|++.|+..|..+..........+. .
T Consensus 345 ~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~--------~ 416 (1041)
T KOG0948|consen 345 ESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKE--------L 416 (1041)
T ss_pred CCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHH--------H
Confidence 1222222111 34579999999999999999888554322211111 1
Q ss_pred chhh----HhhhhH--------HHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEe
Q 000114 1616 VEPF----IDNIQE--------EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVM 1683 (2158)
Q Consensus 1616 l~~~----~~~i~d--------~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~ 1683 (2158)
++.. ++.+.+ +....++..|||+||+||-+--++.|+-+|..|-++||+||-+++.|+|.|+.+||..
T Consensus 417 V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT 496 (1041)
T KOG0948|consen 417 VETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT 496 (1041)
T ss_pred HHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe
Confidence 1111 111111 3455678899999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH-HHHHHhh-CCCccccchhhHHHHHHHHHHhc
Q 000114 1684 GTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE-YYKKFLY-DAFPVESHLHHFLHDNFNAEIVA 1761 (2158)
Q Consensus 1684 gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~-~~~k~l~-~~~piES~L~~~l~d~l~aeI~~ 1761 (2158)
..+.|||..+++ .+--+|+||.|||||.|.|..|.|+++.++.... .-+.++. .+.|+.|.++-.....+|---+.
T Consensus 497 ~~rKfDG~~fRw--issGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtYnMiLNLlRvE 574 (1041)
T KOG0948|consen 497 AVRKFDGKKFRW--ISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTYNMILNLLRVE 574 (1041)
T ss_pred eccccCCcceee--ecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHc
Confidence 999999997655 4789999999999999999999999999998544 3444554 78899998865555555544333
Q ss_pred C
Q 000114 1762 G 1762 (2158)
Q Consensus 1762 ~ 1762 (2158)
+
T Consensus 575 e 575 (1041)
T KOG0948|consen 575 E 575 (1041)
T ss_pred c
Confidence 3
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=367.62 Aligned_cols=351 Identities=19% Similarity=0.231 Sum_probs=273.9
Q ss_pred HHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhh--cCCCceEEEEEcccHHHHHHHH
Q 000114 1331 LYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA--SETGVMRAVYIAPLEALAKERY 1407 (2158)
Q Consensus 1331 ~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~--~~~~~~~~v~IaP~raLa~q~~ 1407 (2158)
..+.+-. +|..++.+|+++|+..+.|.+ ||.+|.||||||++|++|+++++... .+..++-|+||+|||+||.|++
T Consensus 80 t~kgLke~~fv~~teiQ~~~Ip~aL~G~D-vlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtF 158 (758)
T KOG0343|consen 80 TLKGLKEAKFVKMTEIQRDTIPMALQGHD-VLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTF 158 (758)
T ss_pred HHHhHhhcCCccHHHHHHhhcchhccCcc-cccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHH
Confidence 3444433 599999999999999999887 99999999999999999999998764 3444678999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEcCCcchh--hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHH
Q 000114 1408 RDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (2158)
Q Consensus 1408 ~~~~~~f~~~~g~~v~~ltG~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e 1485 (2158)
..+. +.+.+.+++.+.+.|+.... ...+.+.+|+||||+++..++.... ...-.++.++|+|||+.+++.+
T Consensus 159 evL~-kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~-~f~t~~lQmLvLDEADR~LDMG----- 231 (758)
T KOG0343|consen 159 EVLN-KVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENP-NFSTSNLQMLVLDEADRMLDMG----- 231 (758)
T ss_pred HHHH-HHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcC-CCCCCcceEEEeccHHHHHHHh-----
Confidence 9999 78888899999999987765 4567788999999999988776532 2345689999999999999877
Q ss_pred HHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecC---CCCcccccEEEEecccccchHHHHHhcCh
Q 000114 1486 VIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFP---PGVRPVPLEIHIQGVDITNFEARMQAMTK 1561 (2158)
Q Consensus 1486 ~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~---~~~rpv~l~~~i~~~~~~~~~~~~~~~~k 1561 (2158)
+-..+..|.+.++...|.+++|||-.. ..|++..--..+ .++..+ ....|..+...+...+..+...
T Consensus 232 -Fk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP-~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~------- 302 (758)
T KOG0343|consen 232 -FKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDP-VYVSVHENAVAATPSNLQQSYVIVPLEDKID------- 302 (758)
T ss_pred -HHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCC-cEEEEeccccccChhhhhheEEEEehhhHHH-------
Confidence 667777788888999999999999876 567766422222 122211 1223444444433333222211
Q ss_pred HHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecC
Q 000114 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (2158)
Q Consensus 1562 ~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~ 1641 (2158)
..+..|..| ...++|||++|.+++..++..++.. + .+..+..+||
T Consensus 303 ~L~sFI~sh--lk~K~iVF~SscKqvkf~~e~F~rl-------------------------------r--pg~~l~~L~G 347 (758)
T KOG0343|consen 303 MLWSFIKSH--LKKKSIVFLSSCKQVKFLYEAFCRL-------------------------------R--PGIPLLALHG 347 (758)
T ss_pred HHHHHHHhc--cccceEEEEehhhHHHHHHHHHHhc-------------------------------C--CCCceeeecc
Confidence 233344443 4577999999999999998776431 1 3445788999
Q ss_pred CCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEE
Q 000114 1642 GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1721 (2158)
Q Consensus 1642 ~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~ 1721 (2158)
+|++..|..+...|.....-||+||++++||+|+|++.+|| ..+.|..+.+|+||+||+.|. +..|.+
T Consensus 348 ~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwVi----------Q~DCPedv~tYIHRvGRtAR~--~~~G~s 415 (758)
T KOG0343|consen 348 TMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVI----------QVDCPEDVDTYIHRVGRTARY--KERGES 415 (758)
T ss_pred chhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEE----------EecCchhHHHHHHHhhhhhcc--cCCCce
Confidence 99999999999999999999999999999999999999999 567788899999999999996 589999
Q ss_pred EEEecCChHHHHHHHhhC-CCcccc
Q 000114 1722 VILCHAPRKEYYKKFLYD-AFPVES 1745 (2158)
Q Consensus 1722 iil~~~~~~~~~~k~l~~-~~piES 1745 (2158)
+++..+++++++.+-|++ ..|++.
T Consensus 416 ll~L~psEeE~~l~~Lq~k~I~i~~ 440 (758)
T KOG0343|consen 416 LLMLTPSEEEAMLKKLQKKKIPIKE 440 (758)
T ss_pred EEEEcchhHHHHHHHHHHcCCCHHh
Confidence 999999987776666654 355543
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=403.39 Aligned_cols=409 Identities=28% Similarity=0.392 Sum_probs=308.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.|-++|++++.. +..+++|+||||||||||.++..+|...+..+ -+++|++|.|||.+|.+++|...+
T Consensus 119 ~LD~fQ~~a~~~-Ler~esVlV~ApTssGKTvVaeyAi~~al~~~-----------qrviYTsPIKALsNQKyrdl~~~f 186 (1041)
T COG4581 119 ELDPFQQEAIAI-LERGESVLVCAPTSSGKTVVAEYAIALALRDG-----------QRVIYTSPIKALSNQKYRDLLAKF 186 (1041)
T ss_pred CcCHHHHHHHHH-HhCCCcEEEEccCCCCcchHHHHHHHHHHHcC-----------CceEeccchhhhhhhHHHHHHHHh
Confidence 689999999985 56667899999999999999999999888754 269999999999999999999988
Q ss_pred ccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CChhhHHHHHHHHHHH
Q 000114 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~iv~r~~~~ 653 (2158)
+..--.++.+|||.+.+. .+.++|+|-|-+..+..+.. ..+..+..||+||+|.+.| +||.++|.++-.
T Consensus 187 gdv~~~vGL~TGDv~IN~----~A~clvMTTEILRnMlyrg~--~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~---- 256 (1041)
T COG4581 187 GDVADMVGLMTGDVSINP----DAPCLVMTTEILRNMLYRGS--ESLRDIEWVVFDEVHYIGDRERGVVWEEVIIL---- 256 (1041)
T ss_pred hhhhhhccceecceeeCC----CCceEEeeHHHHHHHhccCc--ccccccceEEEEeeeeccccccchhHHHHHHh----
Confidence 743234689999998775 58899999998855555543 5788999999999999999 799999988764
Q ss_pred HhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEee-------ccCChh--HHHHHhhHHHH
Q 000114 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI-------QVKKPL--QRFQLMNDLCY 724 (2158)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~-------~~~~~~--~~~~~l~~~~~ 724 (2158)
.+..+++|+||||+||.++++.|+......++......+||+|+.+++..- ...... ......+..+.
T Consensus 257 ---lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~ 333 (1041)
T COG4581 257 ---LPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLS 333 (1041)
T ss_pred ---cCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhh
Confidence 477899999999999999999999987778889999999999999876532 111110 00000000000
Q ss_pred ----------------------------------HHHHHH---hCCCeEEEEecChHHHHHHHHHHHHHhhccccccccc
Q 000114 725 ----------------------------------EKVVAV---AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767 (2158)
Q Consensus 725 ----------------------------------~~i~~~---~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~ 767 (2158)
..+... ...-|+|+|+-|++.|+..+..+...-.....-
T Consensus 334 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~---- 409 (1041)
T COG4581 334 CFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEE---- 409 (1041)
T ss_pred ccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCc----
Confidence 011111 124589999999999999999887432211100
Q ss_pred ccCch-hHHHHHhhhhcc---------CcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCC
Q 000114 768 KEDSV-SREILQSHTDMV---------KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP 837 (2158)
Q Consensus 768 ~~~~~-~~~~l~~~~~~~---------~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP 837 (2158)
... -..++....... .-..+..++..|+|+|||||-+..|..|+.+|..|.++|+++|.|++.|+|.|
T Consensus 410 --~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP 487 (1041)
T COG4581 410 --KERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP 487 (1041)
T ss_pred --HHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCc
Confidence 001 122333332222 22456778899999999999999999999999999999999999999999999
Q ss_pred ceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCc--HHHHHHh-hcCCCcccchhhHhhHH
Q 000114 838 AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE--LRYYLSL-MNQQLPIESQFVSKLAD 914 (2158)
Q Consensus 838 ~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~--~~~y~~l-l~~~~pieS~l~~~l~d 914 (2158)
+.+||+-....+|... ..+++..+|.||.|||||.|.|..|.+|++-.... ......+ .....|+.|+|...+..
T Consensus 488 artvv~~~l~K~dG~~--~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~~~~~~L~s~f~~sy~m 565 (1041)
T COG4581 488 ARTVVFTSLSKFDGNG--HRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQFRLSYNM 565 (1041)
T ss_pred ccceeeeeeEEecCCc--eeecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhhcCCCccchhheecchhH
Confidence 9999999888888654 67899999999999999999999999999955432 3334444 45567888888776655
Q ss_pred HHHHHHHhccccChHHHHHHHHhhHH
Q 000114 915 QLNAEIVLGTVQNAKEACNWIGYTYL 940 (2158)
Q Consensus 915 ~lnaeI~~~~i~~~~~~~~wl~~t~~ 940 (2158)
.+|-- .+...+.+-..+..+|.
T Consensus 566 ilnll----~v~~l~~~e~ll~~Sf~ 587 (1041)
T COG4581 566 ILNLL----RVEGLQTAEDLLERSFA 587 (1041)
T ss_pred HHhhh----hhcccCcHHHHHHhhHH
Confidence 55532 33334444455555554
|
|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=339.82 Aligned_cols=351 Identities=15% Similarity=0.261 Sum_probs=267.6
Q ss_pred CCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEE
Q 000114 1318 DLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI 1396 (2158)
Q Consensus 1318 dl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~I 1396 (2158)
-...+..-+|+...++.+|. ||..|..+|+.|++.++.+++ |++.|..|+|||.+|-+.+++.+.-.... .+++++
T Consensus 25 v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrd-ViaQaqSGTGKTa~~si~vlq~~d~~~r~--tQ~lil 101 (400)
T KOG0328|consen 25 VIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRD-VIAQAQSGTGKTATFSISVLQSLDISVRE--TQALIL 101 (400)
T ss_pred cccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccc-eEEEecCCCCceEEEEeeeeeecccccce--eeEEEe
Confidence 33445556788999999999 899999999999999999666 99999999999999999888877653333 389999
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcch--hhhcccCC-cEEEeCHHHHHHHHhhhhccccccceeEEEeccc
Q 000114 1397 APLEALAKERYRDWEIKFGQGLGMRVVELTGETAM--DLKLLEKG-QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDEL 1473 (2158)
Q Consensus 1397 aP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~--~~~~l~~~-~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEa 1473 (2158)
+|||+|+.|+.+.+. .++..+++.+-.+.|+.+. +.+.+.-+ +++.+||+++..+.++ .....+.++++|+||+
T Consensus 102 sPTRELa~Qi~~vi~-alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr--~~L~tr~vkmlVLDEa 178 (400)
T KOG0328|consen 102 SPTRELAVQIQKVIL-ALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR--RSLRTRAVKMLVLDEA 178 (400)
T ss_pred cChHHHHHHHHHHHH-HhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh--ccccccceeEEEeccH
Confidence 999999999999998 6888889999999988764 44444444 9999999999999887 4455788999999999
Q ss_pred ccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEecccccch
Q 000114 1474 HLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF 1552 (2158)
Q Consensus 1474 H~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~ 1552 (2158)
|.+++.+ +-.++..+.+.+++.+|++++|||+|. ..+..+++-..+..++.-+....-.-+...+...+..++
T Consensus 179 DemL~kg------fk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~Eew 252 (400)
T KOG0328|consen 179 DEMLNKG------FKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEW 252 (400)
T ss_pred HHHHHhh------HHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhh
Confidence 9888764 555566666677999999999999985 334444443333333321111111001111111111111
Q ss_pred HHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHh
Q 000114 1553 EARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (2158)
Q Consensus 1553 ~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (2158)
. ...+..+... ..-.+++|||||++.+..+...+.. .
T Consensus 253 K-------fdtLcdLYd~-LtItQavIFcnTk~kVdwLtekm~~-----------------------------------~ 289 (400)
T KOG0328|consen 253 K-------FDTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMRE-----------------------------------A 289 (400)
T ss_pred h-------HhHHHHHhhh-hehheEEEEecccchhhHHHHHHHh-----------------------------------h
Confidence 0 0111112222 2346799999999999888766532 2
Q ss_pred cccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCC
Q 000114 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2158)
Q Consensus 1633 ~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR 1712 (2158)
.+.|..+||+|++++|..+.+.|++|+.+||++|++.+||+|+|.+.+|| ||+.|.....|+||+||.||
T Consensus 290 nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslvi----------NYDLP~nre~YIHRIGRSGR 359 (400)
T KOG0328|consen 290 NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVI----------NYDLPNNRELYIHRIGRSGR 359 (400)
T ss_pred CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEE----------ecCCCccHHHHhhhhccccc
Confidence 34588999999999999999999999999999999999999999999999 88888889999999999999
Q ss_pred CCCCCceEEEEEecCChHHHHHH
Q 000114 1713 PLLDNSGKCVILCHAPRKEYYKK 1735 (2158)
Q Consensus 1713 ~g~d~~G~~iil~~~~~~~~~~k 1735 (2158)
-| +.|.++-|+.+.+...+..
T Consensus 360 FG--RkGvainFVk~~d~~~lrd 380 (400)
T KOG0328|consen 360 FG--RKGVAINFVKSDDLRILRD 380 (400)
T ss_pred cC--CcceEEEEecHHHHHHHHH
Confidence 76 9999999999887655543
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=397.31 Aligned_cols=328 Identities=21% Similarity=0.267 Sum_probs=237.9
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.||+.|+|+|.++++.++.++ +++++||||||||++|++|++.. +..+|||+|+++|+.|++..+
T Consensus 7 ~g~~~~r~~Q~~ai~~~l~g~-dvlv~apTGsGKTl~y~lp~l~~--------------~~~~lVi~P~~~L~~dq~~~l 71 (470)
T TIGR00614 7 FGLSSFRPVQLEVINAVLLGR-DCFVVMPTGGGKSLCYQLPALCS--------------DGITLVISPLISLMEDQVLQL 71 (470)
T ss_pred cCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCCcHhHHHHHHHHHc--------------CCcEEEEecHHHHHHHHHHHH
Confidence 389999999999999999886 59999999999999999998752 126899999999999999988
Q ss_pred HhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL 643 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~l 643 (2158)
.. .|+.+..++|+....... ....+|+++|||++....+.........++++|||||||++.+ .|..+
T Consensus 72 ~~----~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~-~g~~f 146 (470)
T TIGR00614 72 KA----SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQ-WGHDF 146 (470)
T ss_pred HH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCc-ccccc
Confidence 75 478888888876644221 2357999999998621111110001356799999999999875 22222
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccCCh--HHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhH
Q 000114 644 ESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMND 721 (2158)
Q Consensus 644 e~iv~r~~~~~~~~~~~~riv~lSATlpn~--~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~ 721 (2158)
.....++.... ...++++++++|||+++. .++..+++.. .+.+...+..|| .+...+. .... .....
T Consensus 147 r~~~~~l~~l~-~~~~~~~~l~lTAT~~~~~~~di~~~l~l~--~~~~~~~s~~r~-nl~~~v~---~~~~-~~~~~--- 215 (470)
T TIGR00614 147 RPDYKALGSLK-QKFPNVPIMALTATASPSVREDILRQLNLK--NPQIFCTSFDRP-NLYYEVR---RKTP-KILED--- 215 (470)
T ss_pred HHHHHHHHHHH-HHcCCCceEEEecCCCHHHHHHHHHHcCCC--CCcEEeCCCCCC-CcEEEEE---eCCc-cHHHH---
Confidence 22222222211 234678999999998753 4566666543 222222222233 2222111 1111 11111
Q ss_pred HHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEec
Q 000114 722 LCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801 (2158)
Q Consensus 722 ~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hH 801 (2158)
+...+.....++.+||||+|++.|+.++..|...+ ..++.+|
T Consensus 216 -l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g-------------------------------------~~~~~~H 257 (470)
T TIGR00614 216 -LLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLG-------------------------------------IAAGAYH 257 (470)
T ss_pred -HHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcC-------------------------------------CCeeEee
Confidence 22223323445677999999999999999987643 2367789
Q ss_pred CCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccE
Q 000114 802 AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881 (2158)
Q Consensus 802 agl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~ 881 (2158)
|+|+..+|..+++.|++|.++|||||+++++|||+|++++||+ |++|. |+.+|+||+|||||.| ..|.
T Consensus 258 ~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~----~~~P~------s~~~y~Qr~GRaGR~G--~~~~ 325 (470)
T TIGR00614 258 AGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH----YSLPK------SMESYYQESGRAGRDG--LPSE 325 (470)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEE----eCCCC------CHHHHHhhhcCcCCCC--CCce
Confidence 9999999999999999999999999999999999999999999 77665 7889999999999988 5699
Q ss_pred EEEEcCCCcHHHHHHhhc
Q 000114 882 GIIITGHSELRYYLSLMN 899 (2158)
Q Consensus 882 ~iil~~~~~~~~y~~ll~ 899 (2158)
|+++++..+...+..++.
T Consensus 326 ~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 326 CHLFYAPADINRLRRLLM 343 (470)
T ss_pred EEEEechhHHHHHHHHHh
Confidence 999999998887777654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=349.52 Aligned_cols=345 Identities=19% Similarity=0.261 Sum_probs=261.9
Q ss_pred CCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEccc
Q 000114 1321 PLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399 (2158)
Q Consensus 1321 p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~ 1399 (2158)
++...+|..+..+.+-. |++.+||+|..|++.++.|.+ +|-||.||||||.+|.+|+++.|..+..+. -++++.||
T Consensus 8 ~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrd-cig~AkTGsGKT~AFaLPil~rLsedP~gi--FalvlTPT 84 (442)
T KOG0340|consen 8 PFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRD-CIGCAKTGSGKTAAFALPILNRLSEDPYGI--FALVLTPT 84 (442)
T ss_pred chhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccc-cccccccCCCcchhhhHHHHHhhccCCCcc--eEEEecch
Confidence 34444555566666655 799999999999999999777 999999999999999999999999853333 79999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcCCcch---hhhcccCCcEEEeCHHHHHHHHhhhhc--cccccceeEEEecccc
Q 000114 1400 EALAKERYRDWEIKFGQGLGMRVVELTGETAM---DLKLLEKGQIIISTPEKWDALSRRWKQ--RKYVQQVSLFIIDELH 1474 (2158)
Q Consensus 1400 raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~---~~~~l~~~~IIV~TPe~l~~l~r~~~~--~~~l~~v~llIiDEaH 1474 (2158)
|+|+.|+.+.|. .+++.+++++..+.|++.. +..+-.++|++|+|||++..+++.... ...++++.++|+|||+
T Consensus 85 rELA~QiaEQF~-alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD 163 (442)
T KOG0340|consen 85 RELALQIAEQFI-ALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD 163 (442)
T ss_pred HHHHHHHHHHHH-HhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh
Confidence 999999999999 7888899999999998764 355667889999999999888876422 2257899999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCc--eEecCCCCcccc----cEEEEeccc
Q 000114 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHG--LFNFPPGVRPVP----LEIHIQGVD 1548 (2158)
Q Consensus 1475 ~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~--i~~f~~~~rpv~----l~~~i~~~~ 1548 (2158)
.+.+.. +-..+..+.+.++.+.|.++||||+.+. +....++.... .|.. ....+++ +...+...+
T Consensus 164 rvL~~~------f~d~L~~i~e~lP~~RQtLlfSATitd~--i~ql~~~~i~k~~a~~~-e~~~~vstvetL~q~yI~~~ 234 (442)
T KOG0340|consen 164 RVLAGC------FPDILEGIEECLPKPRQTLLFSATITDT--IKQLFGCPITKSIAFEL-EVIDGVSTVETLYQGYILVS 234 (442)
T ss_pred hhhccc------hhhHHhhhhccCCCccceEEEEeehhhH--HHHhhcCCcccccceEE-eccCCCCchhhhhhheeecc
Confidence 987654 3444555556667788999999999764 33334433221 1111 1111111 111111000
Q ss_pred ccchHHHHHhcChHH--HHHHHHhH-hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhH
Q 000114 1549 ITNFEARMQAMTKPT--FTAIVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQE 1625 (2158)
Q Consensus 1549 ~~~~~~~~~~~~k~~--~~~i~~~~-~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d 1625 (2158)
. -.+.+ +..+...- .+.+.++|||++...|+.++..|
T Consensus 235 ~---------~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l------------------------------- 274 (442)
T KOG0340|consen 235 I---------DVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTL------------------------------- 274 (442)
T ss_pred h---------hhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHH-------------------------------
Confidence 0 01111 22222221 24788999999999999888655
Q ss_pred HHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHH
Q 000114 1626 EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQ 1705 (2158)
Q Consensus 1626 ~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQ 1705 (2158)
+.+...+..+|+.|++.+|...+..|+++.++|||||++++||+|+|.+.+|| |++.|-.+.+|+|
T Consensus 275 ----~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVv----------N~diPr~P~~yiH 340 (442)
T KOG0340|consen 275 ----KNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVV----------NHDIPRDPKDYIH 340 (442)
T ss_pred ----hhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEE----------ecCCCCCHHHHHH
Confidence 22566789999999999999999999999999999999999999999999999 8899999999999
Q ss_pred hhccCCCCCCCCceEEEEEecCChHHHHH
Q 000114 1706 MMGHASRPLLDNSGKCVILCHAPRKEYYK 1734 (2158)
Q Consensus 1706 r~GRaGR~g~d~~G~~iil~~~~~~~~~~ 1734 (2158)
|+||+.|+| +.|.++.++.+.+.+.+.
T Consensus 341 RvGRtARAG--R~G~aiSivt~rDv~l~~ 367 (442)
T KOG0340|consen 341 RVGRTARAG--RKGMAISIVTQRDVELLQ 367 (442)
T ss_pred hhcchhccc--CCcceEEEechhhHHHHH
Confidence 999999998 788888888876655443
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-37 Score=361.23 Aligned_cols=361 Identities=20% Similarity=0.281 Sum_probs=267.0
Q ss_pred cccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc-------CCCceEEEEE
Q 000114 1325 TALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-------ETGVMRAVYI 1396 (2158)
Q Consensus 1325 ~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~-------~~~~~~~v~I 1396 (2158)
+.++...+..+-. ||..|+|||.+|++..++. .++|..|.||||||.+|++|++-.+.... ...+|.++++
T Consensus 250 ~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~-rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiil 328 (673)
T KOG0333|consen 250 SGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQN-RDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIIL 328 (673)
T ss_pred cCCCHHHHHHHHhcCCCCCchHHHhhccchhcc-CCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeee
Confidence 3455555665544 7999999999999988874 45999999999999999999998776532 1124699999
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh---cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccc
Q 000114 1397 APLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDEL 1473 (2158)
Q Consensus 1397 aP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEa 1473 (2158)
+|||+|+.|+..+-. +|++.+|++++.+.|+.+.+.+ .-..++|+|+||+++++.+-+ ....++++..||+|||
T Consensus 329 aptReLaqqIeeEt~-kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Len--r~lvl~qctyvvldea 405 (673)
T KOG0333|consen 329 APTRELAQQIEEETN-KFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLEN--RYLVLNQCTYVVLDEA 405 (673)
T ss_pred chHHHHHHHHHHHHH-HhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHH--HHHHhccCceEeccch
Confidence 999999999999988 8999999999999999887754 445679999999999876654 3456889999999999
Q ss_pred ccccCCC-CChHHHHHHHHHHHHhh----------------cC--CCceEEEeccCCCC-hHHHHH-HhccCCCceEecC
Q 000114 1474 HLIGGQG-GPVLEVIVSRMRYIASQ----------------VE--NKIRIVALSTSLAN-AKDLGE-WIGATSHGLFNFP 1532 (2158)
Q Consensus 1474 H~l~~~~-g~~~e~~isrl~~i~~~----------------~~--~~~riV~lSATl~n-~~dl~~-wl~~~~~~i~~f~ 1532 (2158)
+.+.+.+ -+.+..++..|-.-... .. .-.+.+.||||++. .+.++. ||.... +....
T Consensus 406 drmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv--~vtig 483 (673)
T KOG0333|consen 406 DRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPV--VVTIG 483 (673)
T ss_pred hhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCe--EEEec
Confidence 9998754 44555555544211100 01 12789999999988 445554 444332 22223
Q ss_pred CCCccccc-EEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCC
Q 000114 1533 PGVRPVPL-EIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLW 1611 (2158)
Q Consensus 1533 ~~~rpv~l-~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~ 1611 (2158)
...+|.|. +..+........ ...+..++.. ....|+|||+|+++.|..+|..|-
T Consensus 484 ~~gk~~~rveQ~v~m~~ed~k--------~kkL~eil~~-~~~ppiIIFvN~kk~~d~lAk~Le---------------- 538 (673)
T KOG0333|consen 484 SAGKPTPRVEQKVEMVSEDEK--------RKKLIEILES-NFDPPIIIFVNTKKGADALAKILE---------------- 538 (673)
T ss_pred cCCCCccchheEEEEecchHH--------HHHHHHHHHh-CCCCCEEEEEechhhHHHHHHHHh----------------
Confidence 33344432 222222211110 1122233333 346789999999999999997662
Q ss_pred CcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCC
Q 000114 1612 PAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQ 1691 (2158)
Q Consensus 1612 ~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~ 1691 (2158)
..++.+..+|||-++++|..+++.|++|..+|||||++++||||+|++.+||
T Consensus 539 -------------------K~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVi--------- 590 (673)
T KOG0333|consen 539 -------------------KAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVI--------- 590 (673)
T ss_pred -------------------hccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceee---------
Confidence 2567799999999999999999999999999999999999999999999999
Q ss_pred CCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHH---HHh----hCCCccccch
Q 000114 1692 ENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYK---KFL----YDAFPVESHL 1747 (2158)
Q Consensus 1692 ~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~---k~l----~~~~piES~L 1747 (2158)
|++..-++.+|+||+||+||+| +.|.|+.|+...+.+.|- ..| ....|+|...
T Consensus 591 -nydmaksieDYtHRIGRTgRAG--k~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela~ 650 (673)
T KOG0333|consen 591 -NYDMAKSIEDYTHRIGRTGRAG--KSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELAN 650 (673)
T ss_pred -ecchhhhHHHHHHHhccccccc--cCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhcc
Confidence 7888889999999999999998 899999998887744322 222 2455666655
|
|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=370.98 Aligned_cols=381 Identities=21% Similarity=0.272 Sum_probs=270.6
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCC---CCCCCCCcE--EE
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDD---GSFNHSNYK--IV 554 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~---~~~~~~~~k--il 554 (2158)
||..+..++ .||..|++||+.++|.|..+.-++|..|.||||||++|-+||+..+....... ......+++ ++
T Consensus 188 lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~L 267 (731)
T KOG0347|consen 188 LPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIAL 267 (731)
T ss_pred CCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeE
Confidence 344444444 69999999999999999999777999999999999999999999665432210 011223444 99
Q ss_pred EEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhH-HHHHHhccCCCccccccceEEee
Q 000114 555 YVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEK-WDIITRKSGDRTYTQLVKLLIID 630 (2158)
Q Consensus 555 ~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPek-ld~l~r~~~~~~~l~~v~lIIiD 630 (2158)
+++|||+||.|+.+.+.......+++|..++|+....+++ ...++|+|+||++ |.++.........+.+++++|+|
T Consensus 268 V~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlD 347 (731)
T KOG0347|consen 268 VVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLD 347 (731)
T ss_pred EecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEc
Confidence 9999999999999999999999999999999999877765 3588999999999 46665554444567889999999
Q ss_pred ccccccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEE-----------ecCCcccc
Q 000114 631 EIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-----------FDNSYRPV 698 (2158)
Q Consensus 631 EaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~-----------f~~~~rpv 698 (2158)
|+|+|.. +....+..|+..+. -++.....|.+.+|||+.-. ...-+........-. -.-.+|.-
T Consensus 348 EaDRmvekghF~Els~lL~~L~--e~~~~~qrQTlVFSATlt~~--~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~k 423 (731)
T KOG0347|consen 348 EADRMVEKGHFEELSKLLKHLN--EEQKNRQRQTLVFSATLTLV--LQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGK 423 (731)
T ss_pred cHHHHhhhccHHHHHHHHHHhh--hhhcccccceEEEEEEeehh--hcChhHHhhhccchhhhhhHHHHHHHHHhCccCC
Confidence 9999986 56666777776654 23445678999999998621 111111000000000 00011111
Q ss_pred cceeEEEeeccCChhHHHHHhhHHHHHHHHHHh--------------CCCeEEEEecChHHHHHHHHHHHHHhhcccccc
Q 000114 699 PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVA--------------GKHQVLIFVHSRKETAKTARAIRDTALENDTLG 764 (2158)
Q Consensus 699 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~--------------~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~ 764 (2158)
| .++...... .. ...+.+..+++. -.+++|||||+...+.+++-.|....+..-
T Consensus 424 p---kiiD~t~q~--~t----a~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~--- 491 (731)
T KOG0347|consen 424 P---KIIDLTPQS--AT----ASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPL--- 491 (731)
T ss_pred C---eeEecCcch--hH----HHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCCc---
Confidence 1 112111111 00 111111111110 167899999999999999999887654432
Q ss_pred cccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEe
Q 000114 765 RFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIK 844 (2158)
Q Consensus 765 ~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~ 844 (2158)
.+||.|.+..|...++.|++..-.|||||+++|||+|+|+|.+||+
T Consensus 492 ----------------------------------~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH 537 (731)
T KOG0347|consen 492 ----------------------------------PLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIH 537 (731)
T ss_pred ----------------------------------hhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEE
Confidence 2399999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHhh---c--C---CCcccchhhHhhHH--
Q 000114 845 GTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLM---N--Q---QLPIESQFVSKLAD-- 914 (2158)
Q Consensus 845 ~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll---~--~---~~pieS~l~~~l~d-- 914 (2158)
|..|- +..-|+||.||+.|++ ..|..+++|.+.+...|.++. + + -+||+..++..+.+
T Consensus 538 YqVPr----------tseiYVHRSGRTARA~--~~Gvsvml~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRv 605 (731)
T KOG0347|consen 538 YQVPR----------TSEIYVHRSGRTARAN--SEGVSVMLCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERV 605 (731)
T ss_pred eecCC----------ccceeEeccccccccc--CCCeEEEEeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHH
Confidence 54443 4446999999999988 669999999999998887752 1 1 26787777776554
Q ss_pred HHHHHHHhcc
Q 000114 915 QLNAEIVLGT 924 (2158)
Q Consensus 915 ~lnaeI~~~~ 924 (2158)
.|..||..-.
T Consensus 606 rLA~ei~~~e 615 (731)
T KOG0347|consen 606 RLAREIDKLE 615 (731)
T ss_pred HHHHHHHHhh
Confidence 3344444433
|
|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=371.38 Aligned_cols=337 Identities=22% Similarity=0.304 Sum_probs=254.3
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCC--CCCcEEEEEcccHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFN--HSNYKIVYVAPMKALVAEVVG 568 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~--~~~~kil~iaP~kaLa~q~~~ 568 (2158)
.|+..|||+|+.+++.+..+++ +++|||||||||.+|++|++..+......+.... ...+.+++++|||+||.|++.
T Consensus 92 ~~~~~ptpvQk~sip~i~~Grd-l~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~n 170 (482)
T KOG0335|consen 92 SGYTKPTPVQKYSIPIISGGRD-LMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYN 170 (482)
T ss_pred ccccCCCcceeeccceeecCCc-eEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHH
Confidence 6899999999999999888766 9999999999999999999999887644221111 135899999999999999999
Q ss_pred HHHhhcccCCcEEEEEeCCCccCHh---hhccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccccc--CChhh
Q 000114 569 NLSNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD--NRGPV 642 (2158)
Q Consensus 569 ~~~~~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d--~rg~~ 642 (2158)
+.++.....++++...+|+.+...+ ...+++|+|+||+++ |.+.++. ..+++++++|+|||+.|.| .|+|.
T Consensus 171 ea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~---i~l~~~k~~vLDEADrMlD~mgF~p~ 247 (482)
T KOG0335|consen 171 EARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGK---ISLDNCKFLVLDEADRMLDEMGFEPQ 247 (482)
T ss_pred HHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcce---eehhhCcEEEecchHHhhhhcccccc
Confidence 9999888888999999999665443 346899999999998 6665554 5688899999999999999 69999
Q ss_pred HHHHHHHHHHHHhhccccccEEEEccccCCh--HHHHHHHhccccCceEEecCC--cccccceeEEEeeccCChhHHHHH
Q 000114 643 LESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFDNS--YRPVPLSQQYIGIQVKKPLQRFQL 718 (2158)
Q Consensus 643 le~iv~r~~~~~~~~~~~~riv~lSATlpn~--~dv~~~l~~~~~~~~~~f~~~--~rpv~l~~~~~~~~~~~~~~~~~~ 718 (2158)
++.|+.+.-. ......|.+++|||.|.. ...+.|+..+ ..+.-... -.+..+.+.+..+........
T Consensus 248 Ir~iv~~~~~---~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~---yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~--- 318 (482)
T KOG0335|consen 248 IRKIVEQLGM---PPKNNRQTLLFSATFPKEIQRLAADFLKDN---YIFLAVGRVGSTSENITQKILFVNEMEKRSK--- 318 (482)
T ss_pred HHHHhcccCC---CCccceeEEEEeccCChhhhhhHHHHhhcc---ceEEEEeeeccccccceeEeeeecchhhHHH---
Confidence 9988876521 123578899999999831 1222333321 12211111 112344455554444322221
Q ss_pred hhHHHHHHHHHHhC-----CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhc
Q 000114 719 MNDLCYEKVVAVAG-----KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2158)
Q Consensus 719 l~~~~~~~i~~~~~-----~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (2158)
+.+++... ..... ...++|||.+++.|..++..|...+.....+
T Consensus 319 Lldll~~~-~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sI------------------------------ 367 (482)
T KOG0335|consen 319 LLDLLNKD-DGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSI------------------------------ 367 (482)
T ss_pred HHHHhhcc-cCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceee------------------------------
Confidence 11111100 00001 2379999999999999999999877655444
Q ss_pred cCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCC
Q 000114 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2158)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2158)
||.-++.+|...++.|++|.+.|||||+++|||+|+|+|++||+ ||.|. ...+|+||+||+||
T Consensus 368 -------hg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn----yDmP~------d~d~YvHRIGRTGR 430 (482)
T KOG0335|consen 368 -------HGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN----YDMPA------DIDDYVHRIGRTGR 430 (482)
T ss_pred -------cchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE----eecCc------chhhHHHhcccccc
Confidence 99999999999999999999999999999999999999999999 55554 46689999999999
Q ss_pred CCCCCccEEEEEcCCCc
Q 000114 874 PQYDSYGEGIIITGHSE 890 (2158)
Q Consensus 874 ~g~d~~G~~iil~~~~~ 890 (2158)
.| ..|.++.|++...
T Consensus 431 ~G--n~G~atsf~n~~~ 445 (482)
T KOG0335|consen 431 VG--NGGRATSFFNEKN 445 (482)
T ss_pred CC--CCceeEEEecccc
Confidence 88 7799999998543
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-37 Score=341.72 Aligned_cols=354 Identities=18% Similarity=0.280 Sum_probs=266.5
Q ss_pred cccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHH
Q 000114 1325 TALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (2158)
Q Consensus 1325 ~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa 1403 (2158)
--|+..++..+|. ||..|.|+|.+.++.++.+.+ +++-|..|+|||-+|.+|+++.+... ....++++++|||+||
T Consensus 90 ~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrd-iLaRaKNGTGKT~a~~IP~Lekid~~--~~~IQ~~ilVPtrelA 166 (459)
T KOG0326|consen 90 YCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRD-ILARAKNGTGKTAAYCIPVLEKIDPK--KNVIQAIILVPTRELA 166 (459)
T ss_pred hhhhHHHHHHHHHhccCCCCCccccccceeecchh-hhhhccCCCCCccceechhhhhcCcc--ccceeEEEEeecchhh
Confidence 3467788889998 899999999999999987655 99999999999999999999998763 3345899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-C
Q 000114 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-Q 1479 (2158)
Q Consensus 1404 ~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~ 1479 (2158)
-|+.+.++ .+++.+|++|...+|+++... +.....+++|+||+++.++..+ .-..+++..++|+||||.+++ +
T Consensus 167 LQtSqvc~-~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K--gVa~ls~c~~lV~DEADKlLs~~ 243 (459)
T KOG0326|consen 167 LQTSQVCK-ELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK--GVADLSDCVILVMDEADKLLSVD 243 (459)
T ss_pred HHHHHHHH-HHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc--ccccchhceEEEechhhhhhchh
Confidence 99999888 788888999999999987653 3334459999999999998876 344689999999999998887 4
Q ss_pred CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCC--CceEecCCCCcccccEEEEecccccchHHHHH
Q 000114 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATS--HGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (2158)
Q Consensus 1480 ~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~--~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~ 1557 (2158)
.++.++.++ ..+++..|++++|||+|.. +..|+..-. ...+|.-....+.-+..++..... ....
T Consensus 244 F~~~~e~li-------~~lP~~rQillySATFP~t--Vk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e---~qKv- 310 (459)
T KOG0326|consen 244 FQPIVEKLI-------SFLPKERQILLYSATFPLT--VKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEE---RQKV- 310 (459)
T ss_pred hhhHHHHHH-------HhCCccceeeEEecccchh--HHHHHHHhccCcceeehhhhhhhcchhhheeeech---hhhh-
Confidence 455555444 3568899999999999873 333332221 112222222222222111111110 0111
Q ss_pred hcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEE
Q 000114 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2158)
Q Consensus 1558 ~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~ 1637 (2158)
..+..+... ..-.+.||||||...++.+|..+.+ +++.+.
T Consensus 311 ----hCLntLfsk-LqINQsIIFCNS~~rVELLAkKITe-----------------------------------lGyscy 350 (459)
T KOG0326|consen 311 ----HCLNTLFSK-LQINQSIIFCNSTNRVELLAKKITE-----------------------------------LGYSCY 350 (459)
T ss_pred ----hhHHHHHHH-hcccceEEEeccchHhHHHHHHHHh-----------------------------------ccchhh
Confidence 112222233 3356899999999999999976632 677899
Q ss_pred EecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCC
Q 000114 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2158)
Q Consensus 1638 ~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~ 1717 (2158)
++|+.|.+++|++|+..|++|..+.||||+.+.||||++++.||| |+++|.+...|+||+||+||-| .
T Consensus 351 yiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVI----------NFDfpk~aEtYLHRIGRsGRFG--h 418 (459)
T KOG0326|consen 351 YIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVI----------NFDFPKNAETYLHRIGRSGRFG--H 418 (459)
T ss_pred HHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEE----------ecCCCCCHHHHHHHccCCccCC--C
Confidence 999999999999999999999999999999999999999999999 7888889999999999999976 8
Q ss_pred ceEEEEEecCChHHHHH---HHh-hCCCccccchhh
Q 000114 1718 SGKCVILCHAPRKEYYK---KFL-YDAFPVESHLHH 1749 (2158)
Q Consensus 1718 ~G~~iil~~~~~~~~~~---k~l-~~~~piES~L~~ 1749 (2158)
.|.|+-+..-.++..+. .-| .+-.|+-+.++.
T Consensus 419 lGlAInLityedrf~L~~IE~eLGtEI~pip~~iDk 454 (459)
T KOG0326|consen 419 LGLAINLITYEDRFNLYRIEQELGTEIKPIPSNIDK 454 (459)
T ss_pred cceEEEEEehhhhhhHHHHHHHhccccccCCCcCCc
Confidence 89999876665433222 222 255566665543
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=390.82 Aligned_cols=405 Identities=27% Similarity=0.390 Sum_probs=306.2
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.+-++|++++..+-. +++|+||||||||||++++.|+...+.. +. +++|++|.+||.+|.+.++..+|++. --
T Consensus 119 ~LD~fQ~~a~~~Ler-~esVlV~ApTssGKTvVaeyAi~~al~~---~q--rviYTsPIKALsNQKyrdl~~~fgdv-~~ 191 (1041)
T COG4581 119 ELDPFQQEAIAILER-GESVLVCAPTSSGKTVVAEYAIALALRD---GQ--RVIYTSPIKALSNQKYRDLLAKFGDV-AD 191 (1041)
T ss_pred CcCHHHHHHHHHHhC-CCcEEEEccCCCCcchHHHHHHHHHHHc---CC--ceEeccchhhhhhhHHHHHHHHhhhh-hh
Confidence 689999999988755 6779999999999999999999988876 44 79999999999999999999999854 23
Q ss_pred EEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCCChHHHHHHHHHHHHhhcC
Q 000114 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVE 1499 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g~~~e~~isrl~~i~~~~~ 1499 (2158)
.++.+|||.+.+ ..+.++|+|.|.+-+++.+ ....+..+..||+||+|.+++ ++|.+||.++- .++
T Consensus 192 ~vGL~TGDv~IN----~~A~clvMTTEILRnMlyr--g~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii-------~lP 258 (1041)
T COG4581 192 MVGLMTGDVSIN----PDAPCLVMTTEILRNMLYR--GSESLRDIEWVVFDEVHYIGDRERGVVWEEVII-------LLP 258 (1041)
T ss_pred hccceecceeeC----CCCceEEeeHHHHHHHhcc--CcccccccceEEEEeeeeccccccchhHHHHHH-------hcC
Confidence 468999998876 5679999999999888876 456789999999999999998 68999998874 347
Q ss_pred CCceEEEeccCCCChHHHHHHhccCC-CceEecCCCCcccccEEEEeccc-------c------cchHHHHHhcC-----
Q 000114 1500 NKIRIVALSTSLANAKDLGEWIGATS-HGLFNFPPGVRPVPLEIHIQGVD-------I------TNFEARMQAMT----- 1560 (2158)
Q Consensus 1500 ~~~riV~lSATl~n~~dl~~wl~~~~-~~i~~f~~~~rpv~l~~~i~~~~-------~------~~~~~~~~~~~----- 1560 (2158)
..+++|+||||++|+.+++.|++... ..++....+.||+|++.++..-. . ..+......+.
T Consensus 259 ~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~ 338 (1041)
T COG4581 259 DHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEK 338 (1041)
T ss_pred CCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchh
Confidence 78999999999999999999999654 34666678899999998874431 0 11111111110
Q ss_pred ----hH---------------------HHHHHHHhH--hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCc
Q 000114 1561 ----KP---------------------TFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPA 1613 (2158)
Q Consensus 1561 ----k~---------------------~~~~i~~~~--~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~ 1613 (2158)
.+ ....+..++ ...-|+|+|+-|++.|+..+..+...-.... .+.
T Consensus 339 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~--------~~~ 410 (1041)
T COG4581 339 VRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLT--------EEK 410 (1041)
T ss_pred ccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccC--------CcH
Confidence 00 000111111 3456899999999999999987753222111 112
Q ss_pred cc-chhhH----hhh---------hHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccE
Q 000114 1614 EE-VEPFI----DNI---------QEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHL 1679 (2158)
Q Consensus 1614 ~~-l~~~~----~~i---------~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~ 1679 (2158)
+. +..++ ..+ .-..+...+..|+++||+||-+..|..|+++|..|-++|++||.+++.|+|.|+.+
T Consensus 411 e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPart 490 (1041)
T COG4581 411 ERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPART 490 (1041)
T ss_pred HHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccc
Confidence 22 22221 111 22456778899999999999999999999999999999999999999999999999
Q ss_pred EEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCCh--HHHHHHHh-hCCCccccchhhHHHHHHH
Q 000114 1680 VVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR--KEYYKKFL-YDAFPVESHLHHFLHDNFN 1756 (2158)
Q Consensus 1680 vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~--~~~~~k~l-~~~~piES~L~~~l~d~l~ 1756 (2158)
||+.+.+.|||..+ .+.+..+|.||.|||||.|.|..|.++++-.... ......+. ..+.|+.|.+.-.+.-.+|
T Consensus 491 vv~~~l~K~dG~~~--r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~~~~~~L~s~f~~sy~miln 568 (1041)
T COG4581 491 VVFTSLSKFDGNGH--RWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQFRLSYNMILN 568 (1041)
T ss_pred eeeeeeEEecCCce--eecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhhcCCCccchhheecchhHHHh
Confidence 99999999999865 5668999999999999999999999999954432 23333333 3677888887544433333
Q ss_pred HHHhcCcCCCHHHHHHHHHHhhh
Q 000114 1757 AEIVAGVIENKQDAVDYLTWTFM 1779 (2158)
Q Consensus 1757 aeI~~~~i~~~qd~id~l~~t~~ 1779 (2158)
- ..+...+.+-+.+..+|+
T Consensus 569 l----l~v~~l~~~e~ll~~Sf~ 587 (1041)
T COG4581 569 L----LRVEGLQTAEDLLERSFA 587 (1041)
T ss_pred h----hhhcccCcHHHHHHhhHH
Confidence 2 233444445566666665
|
|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=353.07 Aligned_cols=367 Identities=19% Similarity=0.203 Sum_probs=250.8
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcC----CCceEEEEEcccHHHHHHHHHHHHHH
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE----TGVMRAVYIAPLEALAKERYRDWEIK 1413 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~----~~~~~~v~IaP~raLa~q~~~~~~~~ 1413 (2158)
++..+|.+|.|+||.+++++| ++|.|+||||||++|++|+++.+....+ ..++-+++|+||||||.|+|+.+.+.
T Consensus 156 ~i~~pTsVQkq~IP~lL~grD-~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKL 234 (708)
T KOG0348|consen 156 KISAPTSVQKQAIPVLLEGRD-ALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKL 234 (708)
T ss_pred ccCccchHhhcchhhhhcCcc-eEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHH
Confidence 499999999999999999777 9999999999999999999999887522 23568999999999999999999976
Q ss_pred hcCCCCcEEEEEcCCcchh---hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCC-CChHHHHHH
Q 000114 1414 FGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVS 1489 (2158)
Q Consensus 1414 f~~~~g~~v~~ltG~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~-g~~~e~~is 1489 (2158)
+....-+.-+.+.|+.... .++....+|+|+||+++.+++...+. ..+++++++|+||+|.|.+.+ +..+..++.
T Consensus 235 l~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~-i~~s~LRwlVlDEaDrlleLGfekdit~Il~ 313 (708)
T KOG0348|consen 235 LKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKS-IKFSRLRWLVLDEADRLLELGFEKDITQILK 313 (708)
T ss_pred hcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccch-heeeeeeEEEecchhHHHhccchhhHHHHHH
Confidence 6655445555666655432 33444559999999999998877543 347789999999999998854 556666666
Q ss_pred HHHHHHhh------cCCCceEEEeccCCCC-hHHHHHHhccCCCceEecC-------CC-------------------Cc
Q 000114 1490 RMRYIASQ------VENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFP-------PG-------------------VR 1536 (2158)
Q Consensus 1490 rl~~i~~~------~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~-------~~-------------------~r 1536 (2158)
-+..+... ++...+-++||||+.+ ...+++.--.++ ..+..+ |. .-
T Consensus 314 ~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDp-v~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~i 392 (708)
T KOG0348|consen 314 AVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDP-VYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAI 392 (708)
T ss_pred HHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCc-eeeeccchhhhcCcchhhhhhcCCcccccccccccC
Confidence 65433221 2224778899999976 344443211111 001000 00 00
Q ss_pred ccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccc
Q 000114 1537 PVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEV 1616 (2158)
Q Consensus 1537 pv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l 1616 (2158)
|..+..++...+.. -++.++.--. ...... ....++|||+++.+.++.-+..+............ -....+.+
T Consensus 393 PeqL~qry~vVPpK---LRLV~Laa~L-~~~~k~-~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s--~~~~s~g~ 465 (708)
T KOG0348|consen 393 PEQLLQRYTVVPPK---LRLVALAALL-LNKVKF-EEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSS--GAPDSEGL 465 (708)
T ss_pred cHHhhhceEecCCc---hhHHHHHHHH-HHHhhh-hhhceeEEEEechhHHHHHHHHHHhhhhccccccc--CCcccCCC
Confidence 11111111111110 1111111111 111111 34557999999999998888777654433210000 00001111
Q ss_pred hhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCc
Q 000114 1617 EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHT 1696 (2158)
Q Consensus 1617 ~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~ 1696 (2158)
. .-.+...+.-+||+|++++|..+++.|....-.||+||++++||+|+|.+.+|| .|+.
T Consensus 466 ~-----------~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vV----------QYd~ 524 (708)
T KOG0348|consen 466 P-----------PLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVV----------QYDP 524 (708)
T ss_pred h-----------hhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEE----------EeCC
Confidence 1 112233488899999999999999999999999999999999999999999999 4667
Q ss_pred CCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhh
Q 000114 1697 DYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLY 1738 (2158)
Q Consensus 1697 ~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~ 1738 (2158)
|.+..+|+||+||+.|.| ..|.+++|..+.+.+ |-+++.
T Consensus 525 P~s~adylHRvGRTARaG--~kG~alLfL~P~Eae-y~~~l~ 563 (708)
T KOG0348|consen 525 PFSTADYLHRVGRTARAG--EKGEALLFLLPSEAE-YVNYLK 563 (708)
T ss_pred CCCHHHHHHHhhhhhhcc--CCCceEEEecccHHH-HHHHHH
Confidence 889999999999999998 789999999998877 555554
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=388.86 Aligned_cols=338 Identities=17% Similarity=0.282 Sum_probs=249.8
Q ss_pred ccccChhHHHHHhcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHH
Q 000114 1324 VTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (2158)
Q Consensus 1324 ~~~L~~~~~~~l~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa 1403 (2158)
...+....++..| ||..|+|+|.++++.+++++ ++++++|||||||+||++|++.. .+ .+|||+|+++|+
T Consensus 9 ~~~~~~~~l~~~f-G~~~~r~~Q~~ai~~il~g~-dvlv~apTGsGKTl~y~lpal~~------~g--~tlVisPl~sL~ 78 (607)
T PRK11057 9 LESLAKQVLQETF-GYQQFRPGQQEIIDAVLSGR-DCLVVMPTGGGKSLCYQIPALVL------DG--LTLVVSPLISLM 78 (607)
T ss_pred chhHHHHHHHHHc-CCCCCCHHHHHHHHHHHcCC-CEEEEcCCCchHHHHHHHHHHHc------CC--CEEEEecHHHHH
Confidence 3344455666666 59999999999999999855 59999999999999999999832 34 799999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcCCcchhhh-----cc--cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccc
Q 000114 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDLK-----LL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476 (2158)
Q Consensus 1404 ~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~-----~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l 1476 (2158)
.|+++.++. + |+.+..+.+....... .+ ...+++++||+++.... +.......+++++||||||++
T Consensus 79 ~dqv~~l~~-~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~--~~~~l~~~~l~~iVIDEaH~i 151 (607)
T PRK11057 79 KDQVDQLLA-N----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDN--FLEHLAHWNPALLAVDEAHCI 151 (607)
T ss_pred HHHHHHHHH-c----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChH--HHHHHhhCCCCEEEEeCcccc
Confidence 999998873 2 5677777776554321 11 23489999999985311 111222357899999999999
Q ss_pred cCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh--HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHH
Q 000114 1477 GGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEA 1554 (2158)
Q Consensus 1477 ~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~--~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~ 1554 (2158)
.+ +|+.+...+.++..+.... ++.+++++|||+++. .++..+++.....++ .....||. +...+. ....
T Consensus 152 ~~-~G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~~~r~n-l~~~v~--~~~~--- 222 (607)
T PRK11057 152 SQ-WGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFDRPN-IRYTLV--EKFK--- 222 (607)
T ss_pred cc-ccCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECCCCCCc-ceeeee--eccc---
Confidence 74 4566666666666655443 478899999999874 467777765543222 22222332 111111 0000
Q ss_pred HHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcc
Q 000114 1555 RMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (2158)
Q Consensus 1555 ~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (2158)
.. ......+ .. ..++++||||+|++.|+.++..|.. .+.
T Consensus 223 ~~----~~l~~~l-~~-~~~~~~IIFc~tr~~~e~la~~L~~-----------------------------------~g~ 261 (607)
T PRK11057 223 PL----DQLMRYV-QE-QRGKSGIIYCNSRAKVEDTAARLQS-----------------------------------RGI 261 (607)
T ss_pred hH----HHHHHHH-Hh-cCCCCEEEEECcHHHHHHHHHHHHh-----------------------------------CCC
Confidence 00 0111111 12 4568899999999999999976632 234
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCC
Q 000114 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2158)
Q Consensus 1635 gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g 1714 (2158)
.+..|||+|+.++|..+++.|++|.++|||||+++++|||+|++++|| |+..|.++.+|+||+|||||.|
T Consensus 262 ~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI----------~~d~P~s~~~y~Qr~GRaGR~G 331 (607)
T PRK11057 262 SAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVV----------HFDIPRNIESYYQETGRAGRDG 331 (607)
T ss_pred CEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEE----------EeCCCCCHHHHHHHhhhccCCC
Confidence 589999999999999999999999999999999999999999999999 6778899999999999999987
Q ss_pred CCCceEEEEEecCChHHHHHHHhhCC
Q 000114 1715 LDNSGKCVILCHAPRKEYYKKFLYDA 1740 (2158)
Q Consensus 1715 ~d~~G~~iil~~~~~~~~~~k~l~~~ 1740 (2158)
..|.|++++...+...+++++.+.
T Consensus 332 --~~~~~ill~~~~d~~~~~~~~~~~ 355 (607)
T PRK11057 332 --LPAEAMLFYDPADMAWLRRCLEEK 355 (607)
T ss_pred --CCceEEEEeCHHHHHHHHHHHhcC
Confidence 678999999988888888888754
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=392.81 Aligned_cols=335 Identities=19% Similarity=0.261 Sum_probs=257.9
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHH
Q 000114 1331 LYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDW 1410 (2158)
Q Consensus 1331 ~~~~l~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~ 1410 (2158)
.++..|. |.+|+|+|.++++.+++++ +++++||||+|||+||++|++. ..+ .++||+|+++|+.|++..+
T Consensus 4 ~l~~~fg-~~~fr~~Q~~~i~~il~g~-dvlv~~PTG~GKTl~y~lpal~------~~g--~~lVisPl~sL~~dq~~~l 73 (591)
T TIGR01389 4 VLKRTFG-YDDFRPGQEEIISHVLDGR-DVLVVMPTGGGKSLCYQVPALL------LKG--LTVVISPLISLMKDQVDQL 73 (591)
T ss_pred HHHHhcC-CCCCCHHHHHHHHHHHcCC-CEEEEcCCCccHhHHHHHHHHH------cCC--cEEEEcCCHHHHHHHHHHH
Confidence 3555565 9999999999999999866 5999999999999999999883 244 7899999999999999988
Q ss_pred HHHhcCCCCcEEEEEcCCcchhhh-----cc--cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCCh
Q 000114 1411 EIKFGQGLGMRVVELTGETAMDLK-----LL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2158)
Q Consensus 1411 ~~~f~~~~g~~v~~ltG~~~~~~~-----~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~ 1483 (2158)
+. + |+.+..++|+...+.. .+ ...+|+++|||++... .|.......++++|||||||++. .+|+.
T Consensus 74 ~~-~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~--~~~~~l~~~~l~~iViDEaH~i~-~~g~~ 145 (591)
T TIGR01389 74 RA-A----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQD--YFLNMLQRIPIALVAVDEAHCVS-QWGHD 145 (591)
T ss_pred HH-c----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcCh--HHHHHHhcCCCCEEEEeCCcccc-cccCc
Confidence 84 2 6788888887665421 11 3459999999998532 22233345689999999999997 56788
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEeccCCCC--hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcCh
Q 000114 1484 LEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTK 1561 (2158)
Q Consensus 1484 ~e~~isrl~~i~~~~~~~~riV~lSATl~n--~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k 1561 (2158)
++..+.++..+...++. .+++++|||.+. ..++..|++......+. .+..||. +...+... ... ..
T Consensus 146 frp~y~~l~~l~~~~~~-~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~n-l~~~v~~~--~~~-------~~ 213 (591)
T TIGR01389 146 FRPEYQRLGSLAERFPQ-VPRIALTATADAETRQDIRELLRLADANEFI-TSFDRPN-LRFSVVKK--NNK-------QK 213 (591)
T ss_pred cHHHHHHHHHHHHhCCC-CCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cCCCCCC-cEEEEEeC--CCH-------HH
Confidence 88888888877766553 459999999876 45788999876554443 2333442 22222111 110 01
Q ss_pred HHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecC
Q 000114 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (2158)
Q Consensus 1562 ~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~ 1641 (2158)
.....+.. ..++++||||+|++.|+.++..|.. .+..++.|||
T Consensus 214 ~l~~~l~~--~~~~~~IIf~~sr~~~e~la~~L~~-----------------------------------~g~~~~~~H~ 256 (591)
T TIGR01389 214 FLLDYLKK--HRGQSGIIYASSRKKVEELAERLES-----------------------------------QGISALAYHA 256 (591)
T ss_pred HHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHh-----------------------------------CCCCEEEEEC
Confidence 12222222 2367899999999999999976632 2345789999
Q ss_pred CCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEE
Q 000114 1642 GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1721 (2158)
Q Consensus 1642 ~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~ 1721 (2158)
+|+.++|..+++.|.+|.++|||||+++++|||+|++++|| |+..|.++.+|+||+|||||.| ..|.|
T Consensus 257 ~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI----------~~~~p~s~~~y~Q~~GRaGR~G--~~~~~ 324 (591)
T TIGR01389 257 GLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVI----------HYDMPGNLESYYQEAGRAGRDG--LPAEA 324 (591)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEE----------EcCCCCCHHHHhhhhccccCCC--CCceE
Confidence 99999999999999999999999999999999999999999 7778889999999999999987 67889
Q ss_pred EEEecCChHHHHHHHhhCCCccc
Q 000114 1722 VILCHAPRKEYYKKFLYDAFPVE 1744 (2158)
Q Consensus 1722 iil~~~~~~~~~~k~l~~~~piE 1744 (2158)
++++...+...++.++.+..|.+
T Consensus 325 il~~~~~d~~~~~~~i~~~~~~~ 347 (591)
T TIGR01389 325 ILLYSPADIALLKRRIEQSEADD 347 (591)
T ss_pred EEecCHHHHHHHHHHHhccCCcH
Confidence 99999988888888888765543
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=338.49 Aligned_cols=341 Identities=19% Similarity=0.268 Sum_probs=260.4
Q ss_pred ChhhHhhc-CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccH
Q 000114 483 PEWAQPAF-KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (2158)
Q Consensus 483 p~~~~~~f-~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~k 560 (2158)
|+.++.++ .+|..|+.||..++|.++.. ..|+|..+..|+|||.+|.|+||..+... ...+.+++|+|++
T Consensus 99 Pellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~--------~~~PQ~iCLaPtr 170 (477)
T KOG0332|consen 99 PELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD--------VVVPQCICLAPTR 170 (477)
T ss_pred HHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc--------ccCCCceeeCchH
Confidence 55555556 68999999999999998865 46999999999999999999999887543 2356899999999
Q ss_pred HHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHH-HHHHhccCCCccccccceEEeecccccccCC
Q 000114 561 ALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (2158)
Q Consensus 561 aLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d~r 639 (2158)
+||.|+.+.+.+..+..++++....-+....+...-..+|+|+||+.+ |...+ .. ...+++++.+|+|||+.+.+.+
T Consensus 171 ELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~k-lk-~id~~kikvfVlDEAD~Mi~tq 248 (477)
T KOG0332|consen 171 ELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLK-LK-CIDLEKIKVFVLDEADVMIDTQ 248 (477)
T ss_pred HHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHH-HH-hhChhhceEEEecchhhhhhcc
Confidence 999999999999988888888777766655554445678999999997 54444 21 1457889999999999998855
Q ss_pred hhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcccc--CceEEecCCcccccceeEEEeeccCChhHHHH
Q 000114 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLE--KGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQ 717 (2158)
Q Consensus 640 g~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~--~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~ 717 (2158)
|-.=.+ .+.....++..|++++|||.. +.++.|...-.+ +.++.-.....-.++.+.++.+. ....+++
T Consensus 249 G~~D~S-----~rI~~~lP~~~QllLFSATf~--e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~--~~~~K~~ 319 (477)
T KOG0332|consen 249 GFQDQS-----IRIMRSLPRNQQLLLFSATFV--EKVAAFALKIVPNANVIILKREELALDNIKQLYVLCA--CRDDKYQ 319 (477)
T ss_pred cccccc-----hhhhhhcCCcceEEeeechhH--HHHHHHHHHhcCCCceeeeehhhccccchhhheeecc--chhhHHH
Confidence 432222 122334567999999999976 667777654322 22333333333334555444333 3345555
Q ss_pred HhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCe
Q 000114 718 LMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797 (2158)
Q Consensus 718 ~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv 797 (2158)
.+.+ +|. ...-++.||||+|++.|.+++..+...| +.|
T Consensus 320 ~l~~-lyg----~~tigqsiIFc~tk~ta~~l~~~m~~~G-------------------------------------h~V 357 (477)
T KOG0332|consen 320 ALVN-LYG----LLTIGQSIIFCHTKATAMWLYEEMRAEG-------------------------------------HQV 357 (477)
T ss_pred HHHH-HHh----hhhhhheEEEEeehhhHHHHHHHHHhcC-------------------------------------cee
Confidence 5544 333 2236799999999999999999998765 346
Q ss_pred EEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCC
Q 000114 798 AIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (2158)
Q Consensus 798 ~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d 877 (2158)
...||.|.-++|..+.+.|+.|.-+|||+|+++|||||++.|++|||++.|.+.. .+-+...|+||+||+||- +
T Consensus 358 ~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~----~~pD~etYlHRiGRtGRF--G 431 (477)
T KOG0332|consen 358 SLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYT----GEPDYETYLHRIGRTGRF--G 431 (477)
T ss_pred EEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccC----CCCCHHHHHHHhcccccc--c
Confidence 7789999999999999999999999999999999999999999999965554433 346889999999999995 4
Q ss_pred CccEEEEEcCCCc
Q 000114 878 SYGEGIIITGHSE 890 (2158)
Q Consensus 878 ~~G~~iil~~~~~ 890 (2158)
+.|.++-+.+..+
T Consensus 432 kkG~a~n~v~~~~ 444 (477)
T KOG0332|consen 432 KKGLAINLVDDKD 444 (477)
T ss_pred ccceEEEeecccC
Confidence 8899999888765
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=389.76 Aligned_cols=321 Identities=21% Similarity=0.304 Sum_probs=237.7
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.||.+|+|+|.++++.++.++ +++++||||+|||++|++|++.. ...+|||+|+++|+.|++..+
T Consensus 21 fG~~~~r~~Q~~ai~~il~g~-dvlv~apTGsGKTl~y~lpal~~--------------~g~tlVisPl~sL~~dqv~~l 85 (607)
T PRK11057 21 FGYQQFRPGQQEIIDAVLSGR-DCLVVMPTGGGKSLCYQIPALVL--------------DGLTLVVSPLISLMKDQVDQL 85 (607)
T ss_pred cCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCchHHHHHHHHHHHc--------------CCCEEEEecHHHHHHHHHHHH
Confidence 599999999999999998875 49999999999999999999853 126899999999999999988
Q ss_pred HhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHH--HHHhccCCCccccccceEEeeccccccc---C
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWD--IITRKSGDRTYTQLVKLLIIDEIHLLHD---N 638 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld--~l~r~~~~~~~l~~v~lIIiDEaH~l~d---~ 638 (2158)
... |+.+..+.+........ ....+++++|||++. .+... ....++++|||||||++.+ .
T Consensus 86 ~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~----l~~~~l~~iVIDEaH~i~~~G~~ 157 (607)
T PRK11057 86 LAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEH----LAHWNPALLAVDEAHCISQWGHD 157 (607)
T ss_pred HHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHH----HhhCCCCEEEEeCccccccccCc
Confidence 763 67787777765543321 235789999999962 22221 2234689999999999875 2
Q ss_pred ChhhHHHHHHHHHHHHhhccccccEEEEccccCCh--HHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHH
Q 000114 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRF 716 (2158)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~--~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~ 716 (2158)
+.+.+..+ ..+ ....+.++++++|||+++. .++..+++.. .+........||. +...+ ..... ..
T Consensus 158 fr~~y~~L-~~l----~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~--~~~~~~~~~~r~n-l~~~v--~~~~~---~~ 224 (607)
T PRK11057 158 FRPEYAAL-GQL----RQRFPTLPFMALTATADDTTRQDIVRLLGLN--DPLIQISSFDRPN-IRYTL--VEKFK---PL 224 (607)
T ss_pred ccHHHHHH-HHH----HHhCCCCcEEEEecCCChhHHHHHHHHhCCC--CeEEEECCCCCCc-ceeee--eeccc---hH
Confidence 44444332 222 2234578999999998863 3455555432 3333343333442 22111 11111 11
Q ss_pred HHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCC
Q 000114 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (2158)
Q Consensus 717 ~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~g 796 (2158)
.. +...+ ....++++||||+|+++|+.++..|...+ ..
T Consensus 225 ~~----l~~~l-~~~~~~~~IIFc~tr~~~e~la~~L~~~g-------------------------------------~~ 262 (607)
T PRK11057 225 DQ----LMRYV-QEQRGKSGIIYCNSRAKVEDTAARLQSRG-------------------------------------IS 262 (607)
T ss_pred HH----HHHHH-HhcCCCCEEEEECcHHHHHHHHHHHHhCC-------------------------------------CC
Confidence 11 11112 22346799999999999999999987643 23
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCC
Q 000114 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (2158)
Q Consensus 797 v~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (2158)
++.+||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+ |+.|. |..+|+||+|||||.|
T Consensus 263 v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~----~d~P~------s~~~y~Qr~GRaGR~G- 331 (607)
T PRK11057 263 AAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH----FDIPR------NIESYYQETGRAGRDG- 331 (607)
T ss_pred EEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE----eCCCC------CHHHHHHHhhhccCCC-
Confidence 678899999999999999999999999999999999999999999999 66665 7889999999999998
Q ss_pred CCccEEEEEcCCCcHHHHHHhhcCC
Q 000114 877 DSYGEGIIITGHSELRYYLSLMNQQ 901 (2158)
Q Consensus 877 d~~G~~iil~~~~~~~~y~~ll~~~ 901 (2158)
..|.|+++++..+...+..++...
T Consensus 332 -~~~~~ill~~~~d~~~~~~~~~~~ 355 (607)
T PRK11057 332 -LPAEAMLFYDPADMAWLRRCLEEK 355 (607)
T ss_pred -CCceEEEEeCHHHHHHHHHHHhcC
Confidence 559999999999988888776554
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=341.92 Aligned_cols=337 Identities=20% Similarity=0.309 Sum_probs=259.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.||.+|+|||+++.|.+|.+.+ ++.+|.||+|||++|++|-+-++...+...+ +..++.+|+++||++|+.|+....
T Consensus 238 ~GFqKPtPIqSQaWPI~LQG~D-liGVAQTgtgKtL~~L~pg~ihi~aqp~~~~--qr~~p~~lvl~ptreLalqie~e~ 314 (629)
T KOG0336|consen 238 TGFQKPTPIQSQAWPILLQGID-LIGVAQTGTGKTLAFLLPGFIHIDAQPKRRE--QRNGPGVLVLTPTRELALQIEGEV 314 (629)
T ss_pred ccCCCCCcchhcccceeecCcc-eEEEEecCCCcCHHHhccceeeeeccchhhh--ccCCCceEEEeccHHHHHHHHhHH
Confidence 6999999999999999999877 9999999999999999998766654332211 345678999999999999998887
Q ss_pred HhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CChhhHHHH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESI 646 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~i 646 (2158)
.+. ...|.+..++.|+.+...+. ..+..|+++||+++..|.... ...+..+-++|+|||+.++| ++.|.+..|
T Consensus 315 ~ky-syng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n--~i~l~siTYlVlDEADrMLDMgFEpqIrki 391 (629)
T KOG0336|consen 315 KKY-SYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDN--VINLASITYLVLDEADRMLDMGFEPQIRKI 391 (629)
T ss_pred hHh-hhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcC--eeeeeeeEEEEecchhhhhcccccHHHHHH
Confidence 764 34477777777776665543 468899999999984443322 25678899999999999999 788888776
Q ss_pred HHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccce--eEEEeeccCChhHHHHHhhHHHH
Q 000114 647 VARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLS--QQYIGIQVKKPLQRFQLMNDLCY 724 (2158)
Q Consensus 647 v~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~--~~~~~~~~~~~~~~~~~l~~~~~ 724 (2158)
+-.+ .++.+.++.|||.| +.|.+........++.++..+.--+... .+++.++. ...++..++.
T Consensus 392 lldi-------RPDRqtvmTSATWP--~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~--d~~k~~~~~~--- 457 (629)
T KOG0336|consen 392 LLDI-------RPDRQTVMTSATWP--EGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTT--DSEKLEIVQF--- 457 (629)
T ss_pred hhhc-------CCcceeeeecccCc--hHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecc--cHHHHHHHHH---
Confidence 5543 67899999999999 5666666666566666666655443221 22232222 2233333322
Q ss_pred HHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCC
Q 000114 725 EKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGM 804 (2158)
Q Consensus 725 ~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl 804 (2158)
.+.......++||||.++.-|..+...|+-.++....+ ||+-
T Consensus 458 -f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~l-------------------------------------HG~r 499 (629)
T KOG0336|consen 458 -FVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSL-------------------------------------HGNR 499 (629)
T ss_pred -HHHhcCCCceEEEEEechhhhhhccchhhhcccchhhc-------------------------------------cCCh
Confidence 23344557799999999988887777776655544333 9999
Q ss_pred CHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEE
Q 000114 805 TRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGII 884 (2158)
Q Consensus 805 ~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ii 884 (2158)
.+.||+..++.|++|+++|||||+++++|+|+|++++|++ ||.|. .+.+|+||+||+||+| ..|.++.
T Consensus 500 ~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N----yDFP~------nIeeYVHRvGrtGRaG--r~G~sis 567 (629)
T KOG0336|consen 500 EQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYN----YDFPR------NIEEYVHRVGRTGRAG--RTGTSIS 567 (629)
T ss_pred hhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeec----cCCCc------cHHHHHHHhcccccCC--CCcceEE
Confidence 9999999999999999999999999999999999999999 77765 7889999999999998 7899999
Q ss_pred EcCCCcHHHHHHh
Q 000114 885 ITGHSELRYYLSL 897 (2158)
Q Consensus 885 l~~~~~~~~y~~l 897 (2158)
+.+..+......+
T Consensus 568 ~lt~~D~~~a~eL 580 (629)
T KOG0336|consen 568 FLTRNDWSMAEEL 580 (629)
T ss_pred EEehhhHHHHHHH
Confidence 9998887665544
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=389.87 Aligned_cols=327 Identities=20% Similarity=0.267 Sum_probs=242.1
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.||.+|+|+|.++++.++.++ +++++||||+|||++|++|++.. +..++||+|+++|+.|++..+
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~-dvlv~~PTG~GKTl~y~lpal~~--------------~g~~lVisPl~sL~~dq~~~l 73 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGR-DVLVVMPTGGGKSLCYQVPALLL--------------KGLTVVISPLISLMKDQVDQL 73 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCccHhHHHHHHHHHc--------------CCcEEEEcCCHHHHHHHHHHH
Confidence 489999999999999999886 59999999999999999998742 125899999999999999988
Q ss_pred HhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHH--HHHhccCCCccccccceEEeecccccccCChh
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWD--IITRKSGDRTYTQLVKLLIIDEIHLLHDNRGP 641 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld--~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~ 641 (2158)
+.. |+.+..++|+.+..... ....+|+++|||++. .+.+. ....++++|||||||++.+ .|.
T Consensus 74 ~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~----l~~~~l~~iViDEaH~i~~-~g~ 144 (591)
T TIGR01389 74 RAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNM----LQRIPIALVAVDEAHCVSQ-WGH 144 (591)
T ss_pred HHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHH----HhcCCCCEEEEeCCccccc-ccC
Confidence 773 78899999887654322 246789999999872 22222 2345789999999999864 232
Q ss_pred hHHHHHHHHHHHHhhccccccEEEEccccCC--hHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHh
Q 000114 642 VLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLM 719 (2158)
Q Consensus 642 ~le~iv~r~~~~~~~~~~~~riv~lSATlpn--~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l 719 (2158)
.+.....++...... .+..+++++|||.+. ..++..+++... +..+..+..|| .+..... .... ...
T Consensus 145 ~frp~y~~l~~l~~~-~~~~~vi~lTAT~~~~~~~~i~~~l~~~~--~~~~~~~~~r~-nl~~~v~--~~~~---~~~-- 213 (591)
T TIGR01389 145 DFRPEYQRLGSLAER-FPQVPRIALTATADAETRQDIRELLRLAD--ANEFITSFDRP-NLRFSVV--KKNN---KQK-- 213 (591)
T ss_pred ccHHHHHHHHHHHHh-CCCCCEEEEEeCCCHHHHHHHHHHcCCCC--CCeEecCCCCC-CcEEEEE--eCCC---HHH--
Confidence 222222333222222 335569999999874 346777776542 22333333344 2222221 1111 111
Q ss_pred hHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEE
Q 000114 720 NDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAI 799 (2158)
Q Consensus 720 ~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~ 799 (2158)
.+.+.+.. ..+.++||||+|++.|+.++..|...+ ..++.
T Consensus 214 --~l~~~l~~-~~~~~~IIf~~sr~~~e~la~~L~~~g-------------------------------------~~~~~ 253 (591)
T TIGR01389 214 --FLLDYLKK-HRGQSGIIYASSRKKVEELAERLESQG-------------------------------------ISALA 253 (591)
T ss_pred --HHHHHHHh-cCCCCEEEEECcHHHHHHHHHHHHhCC-------------------------------------CCEEE
Confidence 12222222 236789999999999999999887543 23578
Q ss_pred ecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCc
Q 000114 800 HHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY 879 (2158)
Q Consensus 800 hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~ 879 (2158)
+||||+.++|..+++.|.+|.++|||||+++++|||+|++++||+ |+++. |..+|+||+|||||.| ..
T Consensus 254 ~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~----~~~p~------s~~~y~Q~~GRaGR~G--~~ 321 (591)
T TIGR01389 254 YHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH----YDMPG------NLESYYQEAGRAGRDG--LP 321 (591)
T ss_pred EECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE----cCCCC------CHHHHhhhhccccCCC--CC
Confidence 899999999999999999999999999999999999999999999 77765 7889999999999988 56
Q ss_pred cEEEEEcCCCcHHHHHHhhcCCCcc
Q 000114 880 GEGIIITGHSELRYYLSLMNQQLPI 904 (2158)
Q Consensus 880 G~~iil~~~~~~~~y~~ll~~~~pi 904 (2158)
|.|+++++..+...+..++....|-
T Consensus 322 ~~~il~~~~~d~~~~~~~i~~~~~~ 346 (591)
T TIGR01389 322 AEAILLYSPADIALLKRRIEQSEAD 346 (591)
T ss_pred ceEEEecCHHHHHHHHHHHhccCCc
Confidence 8999999999988888887765553
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=345.34 Aligned_cols=345 Identities=23% Similarity=0.315 Sum_probs=248.9
Q ss_pred CCCCCCCHHHHHHHHHHHcC--------CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSS--------ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~--------~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaL 562 (2158)
.+++.+.|+|..++|.++.. ..++.|.||||||||++|.+||++.+..... +..++|+|+|+++|
T Consensus 155 ~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v-------~~LRavVivPtr~L 227 (620)
T KOG0350|consen 155 MAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPV-------KRLRAVVIVPTREL 227 (620)
T ss_pred hhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCc-------cceEEEEEeeHHHH
Confidence 57889999999999998642 2359999999999999999999999976532 35799999999999
Q ss_pred HHHHHHHHHhhcccCCcEEEEEeCCCccCHhhh--------ccccEEEcchhHH-HHHHhccCCCccccccceEEeeccc
Q 000114 563 VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQI--------EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (2158)
Q Consensus 563 a~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~--------~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH 633 (2158)
+.|+++.|.++....|+.|+.++|..++..+.. ...+|+|+||+++ |.+....+ ..+++++++||||||
T Consensus 228 ~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~--f~Lk~LrfLVIDEAD 305 (620)
T KOG0350|consen 228 ALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKS--FDLKHLRFLVIDEAD 305 (620)
T ss_pred HHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCC--cchhhceEEEechHH
Confidence 999999999999999999999999988876542 1349999999998 87775332 678999999999999
Q ss_pred cccc-CChhhHHHHHHHHH------------HHHh---------------hccccccEEEEccccCC-hHHHHHHHhccc
Q 000114 634 LLHD-NRGPVLESIVARTV------------RQIE---------------TTKEHIRLVGLSATLPN-YEDVALFLRVNL 684 (2158)
Q Consensus 634 ~l~d-~rg~~le~iv~r~~------------~~~~---------------~~~~~~riv~lSATlpn-~~dv~~~l~~~~ 684 (2158)
+|++ .+...+..++..+. +... ...++...+.+|||+.. +..+..+--..|
T Consensus 306 Rll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~P 385 (620)
T KOG0350|consen 306 RLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIP 385 (620)
T ss_pred HHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCC
Confidence 9987 34433333332221 1110 01223346777888762 334443322221
Q ss_pred cCceEEec----CCcc-cccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhc
Q 000114 685 EKGLFYFD----NSYR-PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALE 759 (2158)
Q Consensus 685 ~~~~~~f~----~~~r-pv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~ 759 (2158)
.++... ..|+ |..+....+..... +..+.........+..++|+|++|...+.+++..|.-...+
T Consensus 386 --rl~~v~~~~~~ryslp~~l~~~~vv~~~~--------~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~ 455 (620)
T KOG0350|consen 386 --RLFHVSKPLIGRYSLPSSLSHRLVVTEPK--------FKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCS 455 (620)
T ss_pred --ceEEeecccceeeecChhhhhceeecccc--------cchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhcc
Confidence 122222 2222 11222222221111 11111122334445679999999999999999988732111
Q ss_pred ccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCce
Q 000114 760 NDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAH 839 (2158)
Q Consensus 760 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v 839 (2158)
. ...+..+.|+++...|...++.|+.|.++||||+++++||+|+.++
T Consensus 456 ~---------------------------------~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v 502 (620)
T KOG0350|consen 456 D---------------------------------NFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDV 502 (620)
T ss_pred c---------------------------------cchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCccccc
Confidence 0 1123335899999999999999999999999999999999999999
Q ss_pred EEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHhhc
Q 000114 840 TVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMN 899 (2158)
Q Consensus 840 ~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~ 899 (2158)
++||+ ||+|. +...|+||+||+||+| ..|.|+.+....+...+.++++
T Consensus 503 ~~VIN----Yd~P~------~~ktyVHR~GRTARAg--q~G~a~tll~~~~~r~F~klL~ 550 (620)
T KOG0350|consen 503 DNVIN----YDPPA------SDKTYVHRAGRTARAG--QDGYAITLLDKHEKRLFSKLLK 550 (620)
T ss_pred ceEee----cCCCc------hhhHHHHhhccccccc--CCceEEEeeccccchHHHHHHH
Confidence 99999 88774 7889999999999999 5599999999888887777654
|
|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-36 Score=352.75 Aligned_cols=387 Identities=20% Similarity=0.263 Sum_probs=267.9
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc---------CCCceE--E
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---------ETGVMR--A 1393 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~---------~~~~~~--~ 1393 (2158)
.|+.+.++++-. ||..|++||..+++++..+.-.++-.|.||||||++|-+||+..+.... ....++ +
T Consensus 187 ~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~ 266 (731)
T KOG0347|consen 187 FLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIA 266 (731)
T ss_pred CCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCccee
Confidence 466777888765 8999999999999999998777999999999999999999998554321 111234 9
Q ss_pred EEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchh--hhccc-CCcEEEeCHHHHHHHHhhhhc-cccccceeEEE
Q 000114 1394 VYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLE-KGQIIISTPEKWDALSRRWKQ-RKYVQQVSLFI 1469 (2158)
Q Consensus 1394 v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~--~~~l~-~~~IIV~TPe~l~~l~r~~~~-~~~l~~v~llI 1469 (2158)
++++|||+||.|+.+.+. ......++++..++|+.... .+.++ .++|||+||+++..++..-.. -..+++++++|
T Consensus 267 LV~tPTRELa~QV~~Hl~-ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLV 345 (731)
T KOG0347|consen 267 LVVTPTRELAHQVKQHLK-AIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLV 345 (731)
T ss_pred EEecChHHHHHHHHHHHH-HhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEE
Confidence 999999999999999998 56667899999999998764 34444 559999999999888765332 33688999999
Q ss_pred ecccccccCCCCChHHHHHHHHHHHH-hhcCCCceEEEeccCCCChH--HHHHHhccCCCc---------eEecCCCCcc
Q 000114 1470 IDELHLIGGQGGPVLEVIVSRMRYIA-SQVENKIRIVALSTSLANAK--DLGEWIGATSHG---------LFNFPPGVRP 1537 (2158)
Q Consensus 1470 iDEaH~l~~~~g~~~e~~isrl~~i~-~~~~~~~riV~lSATl~n~~--dl~~wl~~~~~~---------i~~f~~~~rp 1537 (2158)
+||+|++...+ .|+.+-.-+..+. ++.....|.+.+|||+.-.. .+..--...... ++. .-..|.
T Consensus 346 lDEaDRmvekg--hF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk-~ig~~~ 422 (731)
T KOG0347|consen 346 LDEADRMVEKG--HFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMK-KIGFRG 422 (731)
T ss_pred EccHHHHhhhc--cHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHH-HhCccC
Confidence 99999998654 3444444444433 34456789999999985321 111000000000 000 000111
Q ss_pred cccEEEEecccccchHHHH-----Hh--cChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccC
Q 000114 1538 VPLEIHIQGVDITNFEARM-----QA--MTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLL 1610 (2158)
Q Consensus 1538 v~l~~~i~~~~~~~~~~~~-----~~--~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~ 1610 (2158)
-|--+.+ .+.......+ .+ ..+..|....-. .-.+++|||||+...+..++-.|-
T Consensus 423 kpkiiD~--t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~-ryPGrTlVF~NsId~vKRLt~~L~--------------- 484 (731)
T KOG0347|consen 423 KPKIIDL--TPQSATASTLTESLIECPPLEKDLYLYYFLT-RYPGRTLVFCNSIDCVKRLTVLLN--------------- 484 (731)
T ss_pred CCeeEec--CcchhHHHHHHHHhhcCCccccceeEEEEEe-ecCCceEEEechHHHHHHHHHHHh---------------
Confidence 1111111 0101111100 00 000000000000 125679999999999988875542
Q ss_pred CCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecC
Q 000114 1611 WPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDG 1690 (2158)
Q Consensus 1611 ~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~ 1690 (2158)
.+...-..+|+.|.+..|-..++.|++..-.|||||++++||+|+|++.+||
T Consensus 485 --------------------~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVI-------- 536 (731)
T KOG0347|consen 485 --------------------NLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVI-------- 536 (731)
T ss_pred --------------------hcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEE--------
Confidence 2444567899999999999999999999999999999999999999999999
Q ss_pred CCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhh-----C---CCccccchhhHHHHH--HHHHHh
Q 000114 1691 QENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLY-----D---AFPVESHLHHFLHDN--FNAEIV 1760 (2158)
Q Consensus 1691 ~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~-----~---~~piES~L~~~l~d~--l~aeI~ 1760 (2158)
||.+|-+..-|+||.||+.|++ ..|..+++|.+.+...|+++.. + -+|++..+...+.+- +..||.
T Consensus 537 --HYqVPrtseiYVHRSGRTARA~--~~Gvsvml~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~ei~ 612 (731)
T KOG0347|consen 537 --HYQVPRTSEIYVHRSGRTARAN--SEGVSVMLCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRLAREID 612 (731)
T ss_pred --EeecCCccceeEeccccccccc--CCCeEEEEeChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999996 8999999999998888887644 1 246666554444432 234444
Q ss_pred cCcCCC
Q 000114 1761 AGVIEN 1766 (2158)
Q Consensus 1761 ~~~i~~ 1766 (2158)
.-.+.+
T Consensus 613 ~~e~k~ 618 (731)
T KOG0347|consen 613 KLEIKS 618 (731)
T ss_pred Hhhhhh
Confidence 444433
|
|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=327.21 Aligned_cols=378 Identities=17% Similarity=0.208 Sum_probs=272.4
Q ss_pred CCCcCCCCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHhc-CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCC
Q 000114 1312 PPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYN-TDDNVLVAAPTGSGKTICSEFAILRNHQKASETG 1389 (2158)
Q Consensus 1312 ~~t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~-~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~ 1389 (2158)
|.+|+.....+.-..|+++.++.+|. +|..|+.||..+++.++. ...|+|..+..|+|||.||.|++|.+......
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~-- 159 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVV-- 159 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcccc--
Confidence 66777777777777889999999998 899999999999999885 45799999999999999999999988766333
Q ss_pred ceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEE
Q 000114 1390 VMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFI 1469 (2158)
Q Consensus 1390 ~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llI 1469 (2158)
.|.+++|+|+|+||.|+.+.+. ..|+..++++....-+........-..+|+|+||+.+.+++.+++ ...++.++.+|
T Consensus 160 ~PQ~iCLaPtrELA~Q~~eVv~-eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk-~id~~kikvfV 237 (477)
T KOG0332|consen 160 VPQCICLAPTRELAPQTGEVVE-EMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLK-CIDLEKIKVFV 237 (477)
T ss_pred CCCceeeCchHHHHHHHHHHHH-HhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHH-hhChhhceEEE
Confidence 3489999999999999999998 678776666665554442222122234899999999998887754 34588999999
Q ss_pred ecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEeccc
Q 000114 1470 IDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVD 1548 (2158)
Q Consensus 1470 iDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~ 1548 (2158)
+|||+.+.+.+|.. ..-..|...++.+.|++++|||... ...++.-+-.....++.-+....--++..... .
T Consensus 238 lDEAD~Mi~tqG~~-----D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv--~ 310 (477)
T KOG0332|consen 238 LDEADVMIDTQGFQ-----DQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYV--L 310 (477)
T ss_pred ecchhhhhhccccc-----ccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhhee--e
Confidence 99999888766422 1111222344779999999999865 23444433222222211111110001100000 0
Q ss_pred ccchHHHHHhcChHHHHHHHHhH--hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHH
Q 000114 1549 ITNFEARMQAMTKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEE 1626 (2158)
Q Consensus 1549 ~~~~~~~~~~~~k~~~~~i~~~~--~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~ 1626 (2158)
. ......|+.+.... ..-+++||||.|++.|..++..+..
T Consensus 311 C--------~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~------------------------------ 352 (477)
T KOG0332|consen 311 C--------ACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRA------------------------------ 352 (477)
T ss_pred c--------cchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHh------------------------------
Confidence 0 11123344443321 3457899999999999999977732
Q ss_pred HHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHh
Q 000114 1627 MLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQM 1706 (2158)
Q Consensus 1627 ~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr 1706 (2158)
.++.|..+||.|..++|..+.+.|+.|.-+|||+|++++||||++.+.+|| .||-...+....+...|+||
T Consensus 353 -----~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~Vv----NydlP~~~~~~pD~etYlHR 423 (477)
T KOG0332|consen 353 -----EGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVV----NYDLPVKYTGEPDYETYLHR 423 (477)
T ss_pred -----cCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEE----ecCCccccCCCCCHHHHHHH
Confidence 467799999999999999999999999999999999999999999999999 45544444344468999999
Q ss_pred hccCCCCCCCCceEEEEEecCChHHHHHHHhhCCCccccchhhHHHHHHHHHHhcCc
Q 000114 1707 MGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGV 1763 (2158)
Q Consensus 1707 ~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~~~~piES~L~~~l~d~l~aeI~~~~ 1763 (2158)
+||+||-| +.|.++-|.+..... ++...+.+||+.-|....
T Consensus 424 iGRtGRFG--kkG~a~n~v~~~~s~--------------~~mn~iq~~F~~~i~~~~ 464 (477)
T KOG0332|consen 424 IGRTGRFG--KKGLAINLVDDKDSM--------------NIMNKIQKHFNMKIKRLD 464 (477)
T ss_pred hccccccc--ccceEEEeecccCcH--------------HHHHHHHHHHhhcceecC
Confidence 99999976 899999999886421 123445667766554433
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=383.35 Aligned_cols=420 Identities=16% Similarity=0.217 Sum_probs=280.1
Q ss_pred HHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcc-cCCcEEE
Q 000114 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVR 582 (2158)
Q Consensus 504 i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~-~~gi~v~ 582 (2158)
|-.++.++.+++++||||||||.++.+++++.... +.++++++|+|++|.|+++++.+.++ ..|..|+
T Consensus 10 i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~-----------~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VG 78 (819)
T TIGR01970 10 LRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI-----------GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVG 78 (819)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc-----------CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEE
Confidence 33455677789999999999999999999987521 24899999999999999999975554 4566777
Q ss_pred EEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccc-ccc-CChhhHHHHHHHHHHHHhhcccc
Q 000114 583 ELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL-LHD-NRGPVLESIVARTVRQIETTKEH 660 (2158)
Q Consensus 583 ~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~-l~d-~rg~~le~iv~r~~~~~~~~~~~ 660 (2158)
...+..+ .....++|+|+||+.+-..... ...++++++|||||+|. ..+ +.+.. ++..+ ......+
T Consensus 79 y~vr~~~---~~s~~t~I~v~T~G~Llr~l~~---d~~L~~v~~VIiDEaHER~L~~Dl~L~---ll~~i---~~~lr~d 146 (819)
T TIGR01970 79 YRVRGEN---KVSRRTRLEVVTEGILTRMIQD---DPELDGVGALIFDEFHERSLDADLGLA---LALDV---QSSLRED 146 (819)
T ss_pred EEEcccc---ccCCCCcEEEECCcHHHHHHhh---CcccccCCEEEEeccchhhhccchHHH---HHHHH---HHhcCCC
Confidence 6555432 2234689999999986322222 24688999999999994 333 33321 11112 1224568
Q ss_pred ccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEe
Q 000114 661 IRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFV 740 (2158)
Q Consensus 661 ~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv 740 (2158)
.|+|+||||+++ +.+..|++. .+.+.... +..|+++.+....... .....+...+...+ .. ..+++||||
T Consensus 147 lqlIlmSATl~~-~~l~~~l~~---~~vI~~~g--r~~pVe~~y~~~~~~~--~~~~~v~~~l~~~l-~~-~~g~iLVFl 216 (819)
T TIGR01970 147 LKILAMSATLDG-ERLSSLLPD---APVVESEG--RSFPVEIRYLPLRGDQ--RLEDAVSRAVEHAL-AS-ETGSILVFL 216 (819)
T ss_pred ceEEEEeCCCCH-HHHHHHcCC---CcEEEecC--cceeeeeEEeecchhh--hHHHHHHHHHHHHH-Hh-cCCcEEEEE
Confidence 999999999975 456777652 22333332 3344555554332211 11111222222212 11 257899999
Q ss_pred cChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCC
Q 000114 741 HSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGH 820 (2158)
Q Consensus 741 ~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~ 820 (2158)
++++++..++..|.+... ....+..+||+|+.++|..+++.|++|.
T Consensus 217 pg~~eI~~l~~~L~~~~~----------------------------------~~~~v~pLHg~L~~~eq~~~~~~~~~G~ 262 (819)
T TIGR01970 217 PGQAEIRRVQEQLAERLD----------------------------------SDVLICPLYGELSLAAQDRAIKPDPQGR 262 (819)
T ss_pred CCHHHHHHHHHHHHhhcC----------------------------------CCcEEEEecCCCCHHHHHHHHhhcccCC
Confidence 999999999998875310 0133677899999999999999999999
Q ss_pred ceEEEechhhhhccCCCceEEEEecccc----cCCCCC----ccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHH
Q 000114 821 VQVLVSTATLAWGVNLPAHTVIIKGTQI----YNPEKG----AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (2158)
Q Consensus 821 i~VLVaT~tla~GVdlP~v~vVI~~~~~----yd~~~g----~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~ 892 (2158)
.+|||||+++++|||+|++++||+++.+ ||+.+| ...++|..++.||+|||||. ..|.||.+++..+..
T Consensus 263 rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~~~ 339 (819)
T TIGR01970 263 RKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQHQ 339 (819)
T ss_pred eEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHHHH
Confidence 9999999999999999999999998654 777765 24678999999999999996 479999999876644
Q ss_pred HHHHhhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHH
Q 000114 893 YYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLV 972 (2158)
Q Consensus 893 ~y~~ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li 972 (2158)
.+..+. .+.-..+.+. ..+..-...| +.+..+ +.| +..+....+
T Consensus 340 ~l~~~~-~PEI~r~~L~----~~~L~l~~~g-~~~~~~-~~~-----------------------------l~~P~~~~i 383 (819)
T TIGR01970 340 RLPAQD-EPEILQADLS----GLALELAQWG-AKDPSD-LRW-----------------------------LDAPPSVAL 383 (819)
T ss_pred hhhcCC-CcceeccCcH----HHHHHHHHcC-CCChhh-CCC-----------------------------CCCcCHHHH
Confidence 332211 1111122222 2111111112 111110 111 111112457
Q ss_pred HHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhC
Q 000114 973 HTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSL 1035 (2158)
Q Consensus 973 ~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~ 1035 (2158)
..|+..|...|+|+.+ | .+|++|+.||.++++|...+++..+....+. .+.+.|.++
T Consensus 384 ~~a~~~L~~lgald~~---~--~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~-~~~~~iaa~ 440 (819)
T TIGR01970 384 AAARQLLQRLGALDAQ---G--RLTAHGKAMAALGCHPRLAAMLLSAHSTGLA-ALACDLAAL 440 (819)
T ss_pred HHHHHHHHHCCCCCCC---C--CcCHHHHHHHhcCCCHHHHHHHHHhhhcCCH-HHHHHHHHH
Confidence 8899999999999643 3 6899999999999999999998876554443 344444443
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=349.30 Aligned_cols=364 Identities=19% Similarity=0.255 Sum_probs=259.4
Q ss_pred cccccccccccCCCCCCCCCcCCCCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHH
Q 000114 1295 TVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTIC 1373 (2158)
Q Consensus 1295 ~~~~i~~~~l~lp~~~~~~t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~ 1373 (2158)
..+++...+...|...+.. .-..+......++-. ++..+||+|+-+++.+..+++ +++||+||||||.+
T Consensus 58 ~~i~v~~~G~~~p~~i~~f---------~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grd-l~acAqTGsGKT~a 127 (482)
T KOG0335|consen 58 NDIPVKVSGRDVPPHIPTF---------DEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRD-LMACAQTGSGKTAA 127 (482)
T ss_pred cceeeeccCCccCCCcccc---------cccchhHHHhhccccccccCCCcceeeccceeecCCc-eEEEccCCCcchHH
Confidence 4555555555555544311 111222223333333 699999999999999988776 99999999999999
Q ss_pred HHHHHHHHHHhhcC--------CCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchh---hhcccCCcEE
Q 000114 1374 SEFAILRNHQKASE--------TGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQII 1442 (2158)
Q Consensus 1374 a~l~il~~l~~~~~--------~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~---~~~l~~~~II 1442 (2158)
|++|++.++....+ ...|++++++|||+||.|++++.+ +|.-..+.+++...|+.+.. ...-+.++|+
T Consensus 128 FLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~-k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIl 206 (482)
T KOG0335|consen 128 FLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEAR-KFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDIL 206 (482)
T ss_pred HHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHH-hhcccccceeeeeeCCcchhhhhhhhccCccEE
Confidence 99999999887521 123799999999999999999999 67766788888888886543 2344567999
Q ss_pred EeCHHHHHHHHhhhhccccccceeEEEecccccccC-C-CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HHH-H
Q 000114 1443 ISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-Q-GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDL-G 1518 (2158)
Q Consensus 1443 V~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~-~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~dl-~ 1518 (2158)
|+||+++.++..+ ....+++++++|+|||+.+.+ . .+|.++.++.+..... ....|.+++|||.+.. ..+ +
T Consensus 207 vaTpGrL~d~~e~--g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~---~~~~qt~mFSAtfp~~iq~l~~ 281 (482)
T KOG0335|consen 207 VATPGRLKDLIER--GKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPP---KNNRQTLLFSATFPKEIQRLAA 281 (482)
T ss_pred EecCchhhhhhhc--ceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCC---ccceeEEEEeccCChhhhhhHH
Confidence 9999999988876 456789999999999999988 3 4666666665543221 2478999999999762 222 2
Q ss_pred HHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHh---cCC-----CEEEEecChHHHHHH
Q 000114 1519 EWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAK---NEK-----PALVFVPSRKYVRLT 1590 (2158)
Q Consensus 1519 ~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~---~~~-----~~IVFv~sr~~~~~~ 1590 (2158)
.++......+-+-........+...+..+......+. ...++.... ..+ .++|||.+++.|..+
T Consensus 282 ~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~--------Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l 353 (482)
T KOG0335|consen 282 DFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSK--------LLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADEL 353 (482)
T ss_pred HHhhccceEEEEeeeccccccceeEeeeecchhhHHH--------HHHHhhcccCCcccCCcccceEEEEeeccchhhHH
Confidence 3332211000000111111222222222222221111 111111101 122 699999999999999
Q ss_pred HHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccc
Q 000114 1591 AVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMC 1670 (2158)
Q Consensus 1591 a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la 1670 (2158)
+..|.. .++....+||..++.+|...++.|++|++.|||||++++
T Consensus 354 ~~~l~~-----------------------------------~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~Vaa 398 (482)
T KOG0335|consen 354 AAFLSS-----------------------------------NGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAA 398 (482)
T ss_pred HHHHhc-----------------------------------CCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhh
Confidence 876632 344577899999999999999999999999999999999
Q ss_pred cccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCCh
Q 000114 1671 WGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1671 ~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~ 1729 (2158)
||+|+|++.+|| +|+.|-.+.+|+||+||+||.| ..|.++.|+....
T Consensus 399 RGlDi~~V~hVI----------nyDmP~d~d~YvHRIGRTGR~G--n~G~atsf~n~~~ 445 (482)
T KOG0335|consen 399 RGLDIPNVKHVI----------NYDMPADIDDYVHRIGRTGRVG--NGGRATSFFNEKN 445 (482)
T ss_pred cCCCCCCCceeE----------EeecCcchhhHHHhccccccCC--CCceeEEEecccc
Confidence 999999999999 7788888999999999999997 7899999998544
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=381.40 Aligned_cols=410 Identities=18% Similarity=0.210 Sum_probs=276.3
Q ss_pred HHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcc-cCCcEEE
Q 000114 504 YKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVR 582 (2158)
Q Consensus 504 i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~-~~gi~v~ 582 (2158)
|-.++.++.+++++||||||||.++.+++++.... +.+|++++|+|++|.|+++++.+.++ ..|..|+
T Consensus 13 i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-----------~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 13 LLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-----------NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred HHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-----------CCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 33445666789999999999999999999875321 23899999999999999999976543 4577888
Q ss_pred EEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhcccccc
Q 000114 583 ELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIR 662 (2158)
Q Consensus 583 ~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~r 662 (2158)
..++..+.. ...++|+|+||+.+..+... ...++++++|||||+|.. +...+.++.-+........++.|
T Consensus 82 y~vr~~~~~---~~~t~I~v~T~G~Llr~l~~---d~~L~~v~~IIlDEaHER----~l~~Dl~L~ll~~i~~~lr~~lq 151 (812)
T PRK11664 82 YRMRAESKV---GPNTRLEVVTEGILTRMIQR---DPELSGVGLVILDEFHER----SLQADLALALLLDVQQGLRDDLK 151 (812)
T ss_pred EEecCcccc---CCCCcEEEEChhHHHHHHhh---CCCcCcCcEEEEcCCCcc----ccccchHHHHHHHHHHhCCccce
Confidence 777654322 23578999999987333332 246889999999999952 11111111211222233457899
Q ss_pred EEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecC
Q 000114 663 LVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHS 742 (2158)
Q Consensus 663 iv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~s 742 (2158)
+|+||||++. +.+..|+.. ...+... -+..|+.+++....... +....+...+...+ . ...+++||||++
T Consensus 152 lilmSATl~~-~~l~~~~~~---~~~I~~~--gr~~pV~~~y~~~~~~~--~~~~~v~~~l~~~l-~-~~~g~iLVFlpg 221 (812)
T PRK11664 152 LLIMSATLDN-DRLQQLLPD---APVIVSE--GRSFPVERRYQPLPAHQ--RFDEAVARATAELL-R-QESGSLLLFLPG 221 (812)
T ss_pred EEEEecCCCH-HHHHHhcCC---CCEEEec--CccccceEEeccCchhh--hHHHHHHHHHHHHH-H-hCCCCEEEEcCC
Confidence 9999999974 456676642 2233322 23445555555332211 11111111222211 1 126789999999
Q ss_pred hHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCce
Q 000114 743 RKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQ 822 (2158)
Q Consensus 743 r~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~ 822 (2158)
++++..++..|...... ...+..+||+|+..+|..+++.|++|..+
T Consensus 222 ~~ei~~l~~~L~~~~~~----------------------------------~~~v~~Lhg~l~~~eq~~~~~~~~~G~rk 267 (812)
T PRK11664 222 VGEIQRVQEQLASRVAS----------------------------------DVLLCPLYGALSLAEQQKAILPAPAGRRK 267 (812)
T ss_pred HHHHHHHHHHHHHhccC----------------------------------CceEEEeeCCCCHHHHHHHhccccCCCeE
Confidence 99999999998753100 12366789999999999999999999999
Q ss_pred EEEechhhhhccCCCceEEEEeccc----ccCCCCCc----cccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHH
Q 000114 823 VLVSTATLAWGVNLPAHTVIIKGTQ----IYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYY 894 (2158)
Q Consensus 823 VLVaT~tla~GVdlP~v~vVI~~~~----~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y 894 (2158)
|||||+++++|||+|++++||++.. .||+.+|. ...+|..++.||+|||||. ..|.||.+++..+..
T Consensus 268 VlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~~-- 342 (812)
T PRK11664 268 VVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQAE-- 342 (812)
T ss_pred EEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHHh--
Confidence 9999999999999999999999764 38888762 3568999999999999996 479999999976543
Q ss_pred HHhhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHH
Q 000114 895 LSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHT 974 (2158)
Q Consensus 895 ~~ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~ 974 (2158)
.+.....| .-+...|...+..-...| +.+..+ +.| +..+....+.+
T Consensus 343 -~l~~~~~P--EI~r~dL~~~~L~l~~~g-~~~~~~-~~~-----------------------------ld~P~~~~~~~ 388 (812)
T PRK11664 343 -RAAAQSEP--EILHSDLSGLLLELLQWG-CHDPAQ-LSW-----------------------------LDQPPAAALAA 388 (812)
T ss_pred -hCccCCCC--ceeccchHHHHHHHHHcC-CCCHHh-CCC-----------------------------CCCCCHHHHHH
Confidence 33323233 112222333222222222 122111 111 11111246789
Q ss_pred HHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCC
Q 000114 975 AATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKP 1022 (2158)
Q Consensus 975 a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~ 1022 (2158)
|+..|...|+|+.+ ..+|++|+.||.++++|.-.+++..+...
T Consensus 389 A~~~L~~lgald~~-----g~lT~~G~~m~~lp~~Prla~~ll~a~~~ 431 (812)
T PRK11664 389 AKRLLQQLGALDGQ-----GRLTARGRKMAALGNDPRLAAMLVAAKED 431 (812)
T ss_pred HHHHHHHCCCCCCC-----CCcCHHHHHHHhcCCchHHHHHHHHHHhc
Confidence 99999999999743 37899999999999999999988876443
|
|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=333.74 Aligned_cols=351 Identities=21% Similarity=0.276 Sum_probs=244.0
Q ss_pred CCCCCCHHHHHHHHHHhcC--------CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHH
Q 000114 1338 GFKHFNPIQTQVFTVLYNT--------DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~--------~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~ 1409 (2158)
+++...|+|.++++.++.. ...+.|.||||||||+||.+||++.+.. .+-...|||+|+|+++|+.|+++.
T Consensus 156 ~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~-R~v~~LRavVivPtr~L~~QV~~~ 234 (620)
T KOG0350|consen 156 AISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSS-RPVKRLRAVVIVPTRELALQVYDT 234 (620)
T ss_pred hcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHcc-CCccceEEEEEeeHHHHHHHHHHH
Confidence 5789999999999998641 3459999999999999999999999987 444557999999999999999999
Q ss_pred HHHHhcCCCCcEEEEEcCCcchhhh--cc------cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCC-
Q 000114 1410 WEIKFGQGLGMRVVELTGETAMDLK--LL------EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG- 1480 (2158)
Q Consensus 1410 ~~~~f~~~~g~~v~~ltG~~~~~~~--~l------~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~- 1480 (2158)
|. ++....|+.|+.++|..+...+ .+ ...||+|+||+++.++++..+ ...+++++++||||||+|++..
T Consensus 235 f~-~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k-~f~Lk~LrfLVIDEADRll~qsf 312 (620)
T KOG0350|consen 235 FK-RLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTK-SFDLKHLRFLVIDEADRLLDQSF 312 (620)
T ss_pred HH-HhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCC-CcchhhceEEEechHHHHHHHHH
Confidence 99 6666679999999998765422 11 134999999999999988633 4579999999999999998632
Q ss_pred CChHHHHHHHHHH---------HHhh------------------cCCCceEEEeccCCCC-hHHHHHHhccCCCceEecC
Q 000114 1481 GPVLEVIVSRMRY---------IASQ------------------VENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFP 1532 (2158)
Q Consensus 1481 g~~~e~~isrl~~---------i~~~------------------~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~ 1532 (2158)
-..+..+.+.++. +..+ +..+...+.+|||+.. +..+.++- ..-..++...
T Consensus 313 Q~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~-l~~Prl~~v~ 391 (620)
T KOG0350|consen 313 QEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLT-LHIPRLFHVS 391 (620)
T ss_pred HHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhh-cCCCceEEee
Confidence 1111111111110 1100 1123345666777644 33332221 1111111110
Q ss_pred CCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCC
Q 000114 1533 PGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP 1612 (2158)
Q Consensus 1533 ~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~ 1612 (2158)
.|.-....+... ..+..-......+|.+..-.-+..+..++|+|++|..++..++..|.-...
T Consensus 392 ---~~~~~ryslp~~-l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~------------- 454 (620)
T KOG0350|consen 392 ---KPLIGRYSLPSS-LSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFC------------- 454 (620)
T ss_pred ---cccceeeecChh-hhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhc-------------
Confidence 000000000000 000000011112233222222225678899999999999999877742111
Q ss_pred cccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCC
Q 000114 1613 AEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQE 1692 (2158)
Q Consensus 1613 ~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~ 1692 (2158)
.....+..+.|+++...|...++.|..|.++|||||++++||+|+.++..||
T Consensus 455 ------------------~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VI---------- 506 (620)
T KOG0350|consen 455 ------------------SDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVI---------- 506 (620)
T ss_pred ------------------cccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEe----------
Confidence 1222355688999999999999999999999999999999999999999999
Q ss_pred CcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhhC
Q 000114 1693 NAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYD 1739 (2158)
Q Consensus 1693 ~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~~ 1739 (2158)
||+.|.+...|+||+||++|+| ..|.|+.+.....+..|.++|..
T Consensus 507 NYd~P~~~ktyVHR~GRTARAg--q~G~a~tll~~~~~r~F~klL~~ 551 (620)
T KOG0350|consen 507 NYDPPASDKTYVHRAGRTARAG--QDGYAITLLDKHEKRLFSKLLKK 551 (620)
T ss_pred ecCCCchhhHHHHhhccccccc--CCceEEEeeccccchHHHHHHHH
Confidence 8888999999999999999998 78999999999988888888873
|
|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=328.24 Aligned_cols=341 Identities=18% Similarity=0.276 Sum_probs=253.5
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++.+..+. .||.+||-||+.+||-++++.+ ++..|-||||||.+|++|+++.+......+ ....++.+++++||
T Consensus 26 LD~RllkAi~~lG~ekpTlIQs~aIplaLEgKD-vvarArTGSGKT~AYliPllqkll~~k~t~--~~e~~~sa~iLvPT 102 (569)
T KOG0346|consen 26 LDSRLLKAITKLGWEKPTLIQSSAIPLALEGKD-VVARARTGSGKTAAYLIPLLQKLLAEKKTN--DGEQGPSAVILVPT 102 (569)
T ss_pred CCHHHHHHHHHhCcCCcchhhhcccchhhcCcc-eeeeeccCCCchHHHHHHHHHHHHHhhhcc--cccccceeEEEech
Confidence 344444544 5999999999999999999975 999999999999999999999988765432 23457789999999
Q ss_pred HHHHHHHHHHHHhhcccC--CcEEEEEeCCCccCHh---hhccccEEEcchhHH-HHHHhccCCCccccccceEEeeccc
Q 000114 560 KALVAEVVGNLSNRLQMY--DVKVRELSGDQTLTRQ---QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~--gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH 633 (2158)
|+||+|++..+.++.... .+++.-++.+++.+.. ....++|+|+||.++ ..+.... ...+..+.++|+||||
T Consensus 103 kEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~--~~~~~~l~~LVvDEAD 180 (569)
T KOG0346|consen 103 KELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGV--LEYLDSLSFLVVDEAD 180 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhcc--chhhhheeeEEechhh
Confidence 999999999998876544 3556666655544432 246899999999997 3333332 2577889999999999
Q ss_pred cccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCce-EEecCCccc--ccceeEEEeecc
Q 000114 634 LLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGL-FYFDNSYRP--VPLSQQYIGIQV 709 (2158)
Q Consensus 634 ~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~-~~f~~~~rp--v~l~~~~~~~~~ 709 (2158)
++.. ++...+..+.. ..++..|.++||||+. +|+...-......++ ..+....-| ..+.+.++.+.+
T Consensus 181 LllsfGYeedlk~l~~-------~LPr~~Q~~LmSATl~--dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse 251 (569)
T KOG0346|consen 181 LLLSFGYEEDLKKLRS-------HLPRIYQCFLMSATLS--DDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSE 251 (569)
T ss_pred hhhhcccHHHHHHHHH-------hCCchhhheeehhhhh--hHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEecc
Confidence 9986 45444444433 3567889999999997 555554333222332 333333333 456666665553
Q ss_pred CChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchh
Q 000114 710 KKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (2158)
Q Consensus 710 ~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 789 (2158)
.. ++.. +|..+.-..-.+++||||||...|.++--.|...|+...
T Consensus 252 ~D---Kfll----lyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksc---------------------------- 296 (569)
T KOG0346|consen 252 ED---KFLL----LYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSC---------------------------- 296 (569)
T ss_pred ch---hHHH----HHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhh----------------------------
Confidence 32 2221 222222222278899999999999999999988776543
Q ss_pred hhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEech-----------------------------------hhhhcc
Q 000114 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA-----------------------------------TLAWGV 834 (2158)
Q Consensus 790 ~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~-----------------------------------tla~GV 834 (2158)
+++|.|+..-|-.+++.|..|..+++|||+ -.+|||
T Consensus 297 ---------iLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGI 367 (569)
T KOG0346|consen 297 ---------ILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGI 367 (569)
T ss_pred ---------hhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccc
Confidence 338999999999999999999999999998 157999
Q ss_pred CCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHH
Q 000114 835 NLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (2158)
Q Consensus 835 dlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~ 892 (2158)
|+..|..||| ||.|. +...|+||+||++|.+ +.|.++.++.+.+..
T Consensus 368 DF~~V~~VlN----FD~P~------t~~sYIHRvGRTaRg~--n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 368 DFHHVSNVLN----FDFPE------TVTSYIHRVGRTARGN--NKGTALSFVSPKEEF 413 (569)
T ss_pred cchheeeeee----cCCCC------chHHHHHhccccccCC--CCCceEEEecchHHh
Confidence 9999999999 66554 6678999999999977 789999999886643
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=333.45 Aligned_cols=335 Identities=19% Similarity=0.271 Sum_probs=261.8
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
..|++++|+|-+++|.++.+++ |+-.|-||||||.+|+.|++-+++..+.- ..-.++..||++||++||.|++.+.
T Consensus 241 ~Ey~kptpiq~qalptalsgrd-vigIAktgSgktaAfi~pm~~himdq~eL---~~g~gPi~vilvPTrela~Qi~~ea 316 (731)
T KOG0339|consen 241 SEYEKPTPIQCQALPTALSGRD-VIGIAKTGSGKTAAFIWPMIVHIMDQPEL---KPGEGPIGVILVPTRELASQIFSEA 316 (731)
T ss_pred hhcccCCccccccccccccccc-chheeeccCcchhHHHHHHHHHhcchhhh---cCCCCCeEEEEeccHHHHHHHHHHH
Confidence 3588999999999999999977 99999999999999999999998765421 1236789999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccccc-CChhhHHH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLES 645 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~ 645 (2158)
+++.+.+|+++..++|+.+...+. ..++.||||||+++ |++..+. ..+.++.++||||+++|.+ ++-+...+
T Consensus 317 Kkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKa---tn~~rvS~LV~DEadrmfdmGfe~qVrS 393 (731)
T KOG0339|consen 317 KKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKA---TNLSRVSYLVLDEADRMFDMGFEPQVRS 393 (731)
T ss_pred HHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhc---ccceeeeEEEEechhhhhccccHHHHHH
Confidence 998899999999999998876653 35899999999997 7777665 4678899999999999988 68777777
Q ss_pred HHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcc--cccceeEEEeeccCChhHHHHHhhHHH
Q 000114 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR--PVPLSQQYIGIQVKKPLQRFQLMNDLC 723 (2158)
Q Consensus 646 iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~r--pv~l~~~~~~~~~~~~~~~~~~l~~~~ 723 (2158)
|...+ .++.|.+++|||++ ..+....+..+..++.....+.- ...+.|.+..+.. ..++++ . +
T Consensus 394 I~~hi-------rpdrQtllFsaTf~--~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s--~~~Kl~---w-l 458 (731)
T KOG0339|consen 394 IKQHI-------RPDRQTLLFSATFK--KKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPS--EEKKLN---W-L 458 (731)
T ss_pred HHhhc-------CCcceEEEeeccch--HHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccC--cHHHHH---H-H
Confidence 76544 67899999999998 33444333333333333222211 1122232222221 222222 2 2
Q ss_pred HHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCC
Q 000114 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG 803 (2158)
Q Consensus 724 ~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHag 803 (2158)
...+.+....+.+||||.....+++++..|.-.++ .|+..||.
T Consensus 459 ~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~-------------------------------------~v~llhgd 501 (731)
T KOG0339|consen 459 LRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGF-------------------------------------NVSLLHGD 501 (731)
T ss_pred HHHhhhhccCCcEEEEEeccCCHHHHHHHhccccc-------------------------------------eeeeecCc
Confidence 23344555678999999999999999988876543 46677999
Q ss_pred CCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEE
Q 000114 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (2158)
Q Consensus 804 l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (2158)
|.+.+|..++..|+.+...|||+|+++++|+|+|.+..||+ ||... ++..+.||+||+||.| ..|.++
T Consensus 502 kdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn----yD~ar------dIdththrigrtgRag--~kGvay 569 (731)
T KOG0339|consen 502 KDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN----YDFAR------DIDTHTHRIGRTGRAG--EKGVAY 569 (731)
T ss_pred hhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec----ccccc------hhHHHHHHhhhccccc--ccceee
Confidence 99999999999999999999999999999999999999999 66554 7778999999999998 669999
Q ss_pred EEcCCCcHHHHHH
Q 000114 884 IITGHSELRYYLS 896 (2158)
Q Consensus 884 il~~~~~~~~y~~ 896 (2158)
.++++.+..+.-.
T Consensus 570 TlvTeKDa~fAG~ 582 (731)
T KOG0339|consen 570 TLVTEKDAEFAGH 582 (731)
T ss_pred EEechhhHHHhhH
Confidence 9999888665433
|
|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=329.74 Aligned_cols=335 Identities=20% Similarity=0.262 Sum_probs=254.2
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
+|..+...+ +|+.+|||||.+-+|.++.+++ +|-.|-||||||++|.||++-........-......++..++|+|+
T Consensus 177 FP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRD-mIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPS 255 (610)
T KOG0341|consen 177 FPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRD-MIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPS 255 (610)
T ss_pred CCHHHHHHHHhcCCCCCCceeecCcceEeecCc-eeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCc
Confidence 466555555 7999999999999999999987 9999999999999999998766544221111223367889999999
Q ss_pred HHHHHHHHHHHHhhcccC------CcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEe
Q 000114 560 KALVAEVVGNLSNRLQMY------DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLII 629 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~------gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIi 629 (2158)
|+||.|++.-+..++..+ .++...+.|+.+...+. ..+.+|+|+||+++ |++.++. ..+.-++++.+
T Consensus 256 RELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~---~sLd~CRyL~l 332 (610)
T KOG0341|consen 256 RELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKI---MSLDACRYLTL 332 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhh---ccHHHHHHhhh
Confidence 999999998877765433 35778888998876653 56899999999998 8888776 35677899999
Q ss_pred eccccccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeec
Q 000114 630 DEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQ 708 (2158)
Q Consensus 630 DEaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~ 708 (2158)
|||+++.| ++...+..|...+ ....|.+++|||+| ..+..|.+..+.+++.+-...--...+
T Consensus 333 DEADRmiDmGFEddir~iF~~F-------K~QRQTLLFSATMP--~KIQ~FAkSALVKPvtvNVGRAGAAsl-------- 395 (610)
T KOG0341|consen 333 DEADRMIDMGFEDDIRTIFSFF-------KGQRQTLLFSATMP--KKIQNFAKSALVKPVTVNVGRAGAASL-------- 395 (610)
T ss_pred hhHHHHhhccchhhHHHHHHHH-------hhhhheeeeecccc--HHHHHHHHhhcccceEEecccccccch--------
Confidence 99999999 6877777777655 34567899999999 567777766544433221111111111
Q ss_pred cCChhHHHHH---hhHHHHHHHHHHhC--CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhc
Q 000114 709 VKKPLQRFQL---MNDLCYEKVVAVAG--KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM 783 (2158)
Q Consensus 709 ~~~~~~~~~~---l~~~~~~~i~~~~~--~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 783 (2158)
+..+.... -++++| +++.+. ..|+||||..+.++..+.++|.-+|.....
T Consensus 396 --dViQevEyVkqEaKiVy--lLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEava--------------------- 450 (610)
T KOG0341|consen 396 --DVIQEVEYVKQEAKIVY--LLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVA--------------------- 450 (610)
T ss_pred --hHHHHHHHHHhhhhhhh--HHHHhccCCCceEEEeccccChHHHHHHHHHccceeEE---------------------
Confidence 11111111 112222 334433 579999999999999999998877655433
Q ss_pred cCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHH
Q 000114 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD 863 (2158)
Q Consensus 784 ~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~ 863 (2158)
.|||-.+++|....+.|+.|+-+|||||++++.|+|+|++.+||| ||.|. .+..
T Consensus 451 ----------------IHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN----yDMP~------eIEN 504 (610)
T KOG0341|consen 451 ----------------IHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN----YDMPE------EIEN 504 (610)
T ss_pred ----------------eecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc----CCChH------HHHH
Confidence 399999999999999999999999999999999999999999999 55554 5678
Q ss_pred HHHhhcccCCCCCCCccEEEEEcCCCc
Q 000114 864 IMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2158)
Q Consensus 864 ~~Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (2158)
|+||+||+||.| +.|.+..+.+...
T Consensus 505 YVHRIGRTGRsg--~~GiATTfINK~~ 529 (610)
T KOG0341|consen 505 YVHRIGRTGRSG--KTGIATTFINKNQ 529 (610)
T ss_pred HHHHhcccCCCC--Ccceeeeeecccc
Confidence 999999999988 7899998887754
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=325.30 Aligned_cols=343 Identities=17% Similarity=0.257 Sum_probs=249.7
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhh----cCCCceEEEEEcccHHHHH
Q 000114 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA----SETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~----~~~~~~~~v~IaP~raLa~ 1404 (2158)
+.++++-+ ||..|+|||+|+.|.++++.| ++.+|.||+|||++|++|-+-++... ....++.+|+++||++|+.
T Consensus 230 evmenIkK~GFqKPtPIqSQaWPI~LQG~D-liGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLal 308 (629)
T KOG0336|consen 230 EVMENIKKTGFQKPTPIQSQAWPILLQGID-LIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELAL 308 (629)
T ss_pred HHHHHHHhccCCCCCcchhcccceeecCcc-eEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHH
Confidence 45677766 899999999999999999777 99999999999999999988776543 1234568999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcchh--hhcccC-CcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCC
Q 000114 1405 ERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEK-GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~ltG~~~~~--~~~l~~-~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g 1481 (2158)
|+--... ++.-. |.+..++.|+.+.. .+.++. ..||++||++|..+.-. ...++.++.++|+||||.+++.+
T Consensus 309 qie~e~~-kysyn-g~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~--n~i~l~siTYlVlDEADrMLDMg- 383 (629)
T KOG0336|consen 309 QIEGEVK-KYSYN-GLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD--NVINLASITYLVLDEADRMLDMG- 383 (629)
T ss_pred HHHhHHh-Hhhhc-CcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc--CeeeeeeeEEEEecchhhhhccc-
Confidence 9987776 34332 55555555554433 344444 49999999999888654 45578999999999999999876
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcC
Q 000114 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (2158)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~ 1560 (2158)
+|. .++.|.-...++.+.++.|||.|. .+.++.-.-..+..+++- +..-+.....-+.+-..+-....
T Consensus 384 --FEp---qIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vG--sLdL~a~~sVkQ~i~v~~d~~k~---- 452 (629)
T KOG0336|consen 384 --FEP---QIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVG--SLDLVAVKSVKQNIIVTTDSEKL---- 452 (629)
T ss_pred --ccH---HHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEec--ccceeeeeeeeeeEEecccHHHH----
Confidence 333 333443344678999999999987 556665443333323322 11111111111111111111111
Q ss_pred hHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEec
Q 000114 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2158)
Q Consensus 1561 k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H 1640 (2158)
...+......+...++||||.++..|..+..+|+- -+.....+|
T Consensus 453 -~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l-----------------------------------~gi~~q~lH 496 (629)
T KOG0336|consen 453 -EIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCL-----------------------------------KGISSQSLH 496 (629)
T ss_pred -HHHHHHHHhcCCCceEEEEEechhhhhhccchhhh-----------------------------------cccchhhcc
Confidence 22333444447888999999999888776655521 122345689
Q ss_pred CCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceE
Q 000114 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2158)
Q Consensus 1641 ~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~ 1720 (2158)
|+-.+.||+..++.|++|.++|||||++++||+|+|++++|+ |+++|..+.+|+||+||+||+| +.|.
T Consensus 497 G~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~----------NyDFP~nIeeYVHRvGrtGRaG--r~G~ 564 (629)
T KOG0336|consen 497 GNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVY----------NYDFPRNIEEYVHRVGRTGRAG--RTGT 564 (629)
T ss_pred CChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceee----------ccCCCccHHHHHHHhcccccCC--CCcc
Confidence 999999999999999999999999999999999999999999 8899999999999999999998 7888
Q ss_pred EEEEecCChHHHHHHHh
Q 000114 1721 CVILCHAPRKEYYKKFL 1737 (2158)
Q Consensus 1721 ~iil~~~~~~~~~~k~l 1737 (2158)
++.+....+-...+.++
T Consensus 565 sis~lt~~D~~~a~eLI 581 (629)
T KOG0336|consen 565 SISFLTRNDWSMAEELI 581 (629)
T ss_pred eEEEEehhhHHHHHHHH
Confidence 88888777655544443
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=348.75 Aligned_cols=337 Identities=21% Similarity=0.306 Sum_probs=263.9
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHH
Q 000114 1330 PLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (2158)
Q Consensus 1330 ~~~~~l~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~ 1409 (2158)
..+..+|. +..|+|-|.++|..++++ +++++..|||+||++||++|.+- ..| -+|+|+|..+|+.++.+.
T Consensus 7 ~~L~~~fG-y~~FR~gQ~evI~~~l~g-~d~lvvmPTGgGKSlCyQiPAll------~~G--~TLVVSPLiSLM~DQV~~ 76 (590)
T COG0514 7 QVLKQVFG-YASFRPGQQEIIDALLSG-KDTLVVMPTGGGKSLCYQIPALL------LEG--LTLVVSPLISLMKDQVDQ 76 (590)
T ss_pred HHHHHHhC-ccccCCCHHHHHHHHHcC-CcEEEEccCCCCcchHhhhHHHh------cCC--CEEEECchHHHHHHHHHH
Confidence 34566665 999999999999999986 55999999999999999999983 244 799999999999999998
Q ss_pred HHHHhcCCCCcEEEEEcCCcchhh-----hcccC--CcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCC
Q 000114 1410 WEIKFGQGLGMRVVELTGETAMDL-----KLLEK--GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2158)
Q Consensus 1410 ~~~~f~~~~g~~v~~ltG~~~~~~-----~~l~~--~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~ 1482 (2158)
++.. |+++..+.+..+.+. ..+.. .++++.+||++..-... ....-..+++++||||||+. .+|+
T Consensus 77 l~~~-----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~--~~L~~~~i~l~vIDEAHCiS-qWGh 148 (590)
T COG0514 77 LEAA-----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL--ELLKRLPISLVAIDEAHCIS-QWGH 148 (590)
T ss_pred HHHc-----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH--HHHHhCCCceEEechHHHHh-hcCC
Confidence 8842 788988888766542 23333 48999999998542111 11114578999999999996 6679
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEeccCCCC--hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcC
Q 000114 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (2158)
Q Consensus 1483 ~~e~~isrl~~i~~~~~~~~riV~lSATl~n--~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~ 1560 (2158)
.|+.-+.++..+...++ ++.+++||||..+ ..|+.+-|+.....+|.-+. .|| +.........
T Consensus 149 dFRP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sf-dRp-------------Ni~~~v~~~~ 213 (590)
T COG0514 149 DFRPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSF-DRP-------------NLALKVVEKG 213 (590)
T ss_pred ccCHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecC-CCc-------------hhhhhhhhcc
Confidence 99999999998888777 8899999999766 46888888887654443222 222 2211111111
Q ss_pred --hHHHHHHHH-hHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEE
Q 000114 1561 --KPTFTAIVQ-HAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2158)
Q Consensus 1561 --k~~~~~i~~-~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~ 1637 (2158)
...+..+.. .....++.||||.||+.|+.+|..|.. .+..++
T Consensus 214 ~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~-----------------------------------~g~~a~ 258 (590)
T COG0514 214 EPSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAEWLRK-----------------------------------NGISAG 258 (590)
T ss_pred cHHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHHHHHH-----------------------------------CCCceE
Confidence 011112221 114567799999999999999977732 245689
Q ss_pred EecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCC
Q 000114 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2158)
Q Consensus 1638 ~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~ 1717 (2158)
.|||||+.++|..+++.|..+.++|+|||.++++|||.|++++|| |++.|-++.+|.|.+|||||.| .
T Consensus 259 ~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfVi----------H~~lP~s~EsYyQE~GRAGRDG--~ 326 (590)
T COG0514 259 AYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVI----------HYDLPGSIESYYQETGRAGRDG--L 326 (590)
T ss_pred EecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEE----------EecCCCCHHHHHHHHhhccCCC--C
Confidence 999999999999999999999999999999999999999999999 8999999999999999999987 7
Q ss_pred ceEEEEEecCChHHHHHHHhhCCCccccc
Q 000114 1718 SGKCVILCHAPRKEYYKKFLYDAFPVESH 1746 (2158)
Q Consensus 1718 ~G~~iil~~~~~~~~~~k~l~~~~piES~ 1746 (2158)
.+.|++++...+......++....|.+..
T Consensus 327 ~a~aill~~~~D~~~~~~~i~~~~~~~~~ 355 (590)
T COG0514 327 PAEAILLYSPEDIRWQRYLIEQSKPDEEQ 355 (590)
T ss_pred cceEEEeeccccHHHHHHHHHhhcchHHH
Confidence 89999999999988888888877774443
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=370.06 Aligned_cols=310 Identities=19% Similarity=0.247 Sum_probs=227.1
Q ss_pred CCCCCCHHHHHHHHHHHcC-----CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSS-----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~-----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~ 566 (2158)
+| +||++|.+|++.++.+ ..++|+|||||||||.+|+++++..+..+ .+++|++||++||.|+
T Consensus 449 ~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g-----------~qvlvLvPT~~LA~Q~ 516 (926)
T TIGR00580 449 PF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG-----------KQVAVLVPTTLLAQQH 516 (926)
T ss_pred CC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC-----------CeEEEEeCcHHHHHHH
Confidence 56 5999999999999875 24699999999999999999999887643 4899999999999999
Q ss_pred HHHHHhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCC
Q 000114 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (2158)
Q Consensus 567 ~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~r 639 (2158)
++.|+++++.+++++..++|..+...+. ...++|+|+||.. +.+ ...++++++|||||+|+++.
T Consensus 517 ~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l---l~~----~v~f~~L~llVIDEahrfgv-- 587 (926)
T TIGR00580 517 FETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL---LQK----DVKFKDLGLLIIDEEQRFGV-- 587 (926)
T ss_pred HHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH---hhC----CCCcccCCEEEeecccccch--
Confidence 9999999998999999999977643321 1358999999963 322 13578899999999998632
Q ss_pred hhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHh
Q 000114 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLM 719 (2158)
Q Consensus 640 g~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l 719 (2158)
.....+ .....++++++||||+. ...+...+... ..............++...+.... . ..+
T Consensus 588 --~~~~~L-------~~~~~~~~vL~~SATpi-prtl~~~l~g~-~d~s~I~~~p~~R~~V~t~v~~~~---~----~~i 649 (926)
T TIGR00580 588 --KQKEKL-------KELRTSVDVLTLSATPI-PRTLHMSMSGI-RDLSIIATPPEDRLPVRTFVMEYD---P----ELV 649 (926)
T ss_pred --hHHHHH-------HhcCCCCCEEEEecCCC-HHHHHHHHhcC-CCcEEEecCCCCccceEEEEEecC---H----HHH
Confidence 222222 22356789999999953 34444333221 111111111111123333322111 1 111
Q ss_pred hHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEE
Q 000114 720 NDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAI 799 (2158)
Q Consensus 720 ~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~ 799 (2158)
...+.. +...+++++|||++++.+..++..|..... ...|+.
T Consensus 650 ~~~i~~---el~~g~qv~if~n~i~~~e~l~~~L~~~~p-----------------------------------~~~v~~ 691 (926)
T TIGR00580 650 REAIRR---ELLRGGQVFYVHNRIESIEKLATQLRELVP-----------------------------------EARIAI 691 (926)
T ss_pred HHHHHH---HHHcCCeEEEEECCcHHHHHHHHHHHHhCC-----------------------------------CCeEEE
Confidence 111111 223478999999999999999888875321 134788
Q ss_pred ecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCc
Q 000114 800 HHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY 879 (2158)
Q Consensus 800 hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~ 879 (2158)
+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||. ++++. ++..+|+||+||+||.| ..
T Consensus 692 lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi----~~a~~-----~gls~l~Qr~GRvGR~g--~~ 760 (926)
T TIGR00580 692 AHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII----ERADK-----FGLAQLYQLRGRVGRSK--KK 760 (926)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE----ecCCC-----CCHHHHHHHhcCCCCCC--CC
Confidence 999999999999999999999999999999999999999999997 55543 36678999999999977 67
Q ss_pred cEEEEEcCCC
Q 000114 880 GEGIIITGHS 889 (2158)
Q Consensus 880 G~~iil~~~~ 889 (2158)
|.||+++...
T Consensus 761 g~aill~~~~ 770 (926)
T TIGR00580 761 AYAYLLYPHQ 770 (926)
T ss_pred eEEEEEECCc
Confidence 9999998764
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=364.24 Aligned_cols=415 Identities=15% Similarity=0.164 Sum_probs=285.2
Q ss_pred hcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhh
Q 000114 1354 YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433 (2158)
Q Consensus 1354 ~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~ 1433 (2158)
+.++.+++++||||||||+++.++++..... ++ ++++++|+|++|.|+++++.+.++...|..|+...+...
T Consensus 14 l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~---~~--~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~--- 85 (819)
T TIGR01970 14 LAAHPQVVLEAPPGAGKSTAVPLALLDAPGI---GG--KIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN--- 85 (819)
T ss_pred HHcCCcEEEECCCCCCHHHHHHHHHHHhhcc---CC--eEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc---
Confidence 3457779999999999999999999977632 34 899999999999999999987887766777776554322
Q ss_pred hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccc-ccC-CCCChHHHHHHHHHHHHhhcCCCceEEEeccCC
Q 000114 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL-IGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (2158)
Q Consensus 1434 ~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~-l~~-~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl 1511 (2158)
..-.+++|+|+||+.+..++.. ...++++++|||||+|. ..+ +. .+..++.+...++.+.|+|+||||+
T Consensus 86 ~~s~~t~I~v~T~G~Llr~l~~---d~~L~~v~~VIiDEaHER~L~~Dl------~L~ll~~i~~~lr~dlqlIlmSATl 156 (819)
T TIGR01970 86 KVSRRTRLEVVTEGILTRMIQD---DPELDGVGALIFDEFHERSLDADL------GLALALDVQSSLREDLKILAMSATL 156 (819)
T ss_pred ccCCCCcEEEECCcHHHHHHhh---CcccccCCEEEEeccchhhhccch------HHHHHHHHHHhcCCCceEEEEeCCC
Confidence 2223569999999998766554 45789999999999994 332 22 1222333334456789999999999
Q ss_pred CChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhH-hcCCCEEEEecChHHHHHH
Q 000114 1512 ANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNEKPALVFVPSRKYVRLT 1590 (2158)
Q Consensus 1512 ~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~-~~~~~~IVFv~sr~~~~~~ 1590 (2158)
.. ..+.++++... ++.. ..+..|+++++........ +. ......+...+ ...+++|||||++++++.+
T Consensus 157 ~~-~~l~~~l~~~~--vI~~--~gr~~pVe~~y~~~~~~~~---~~---~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l 225 (819)
T TIGR01970 157 DG-ERLSSLLPDAP--VVES--EGRSFPVEIRYLPLRGDQR---LE---DAVSRAVEHALASETGSILVFLPGQAEIRRV 225 (819)
T ss_pred CH-HHHHHHcCCCc--EEEe--cCcceeeeeEEeecchhhh---HH---HHHHHHHHHHHHhcCCcEEEEECCHHHHHHH
Confidence 65 45777776322 3322 2244455555433221111 10 00111122211 2367899999999999998
Q ss_pred HHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccc
Q 000114 1591 AVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMC 1670 (2158)
Q Consensus 1591 a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la 1670 (2158)
+..|..... .+..|..+||+|+.++|..+++.|.+|..+|||||++++
T Consensus 226 ~~~L~~~~~--------------------------------~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAE 273 (819)
T TIGR01970 226 QEQLAERLD--------------------------------SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAE 273 (819)
T ss_pred HHHHHhhcC--------------------------------CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHh
Confidence 876632110 134588999999999999999999999999999999999
Q ss_pred cccCCCccEEEEe-c---ceeecCCCCc----CcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhhCCCc
Q 000114 1671 WGVPLTAHLVVVM-G---TQYYDGQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFP 1742 (2158)
Q Consensus 1671 ~Gvdlp~~~vVI~-g---t~~yd~~~~~----~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~~~~p 1742 (2158)
+|||+|++.+||- | ...||+..+. ..++|..+|.||+|||||. ..|.||.+++......+..+ ..|+.
T Consensus 274 rgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~~~~l~~~-~~PEI 349 (819)
T TIGR01970 274 TSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQHQRLPAQ-DEPEI 349 (819)
T ss_pred hcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHHHHhhhcC-CCcce
Confidence 9999999999993 2 2346665432 2467889999999999996 69999999987543333222 35666
Q ss_pred cccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccHHHHHHHHHHHHHHHHHhCCCee
Q 000114 1743 VESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCII 1822 (2158)
Q Consensus 1743 iES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~lve~~l~~L~~~~~I~ 1822 (2158)
..+.|...+.. +..-.+.+..+ ++| ...|.. +.++.++..|...|+|.
T Consensus 350 ~r~~L~~~~L~-----l~~~g~~~~~~-~~~----------l~~P~~----------------~~i~~a~~~L~~lgald 397 (819)
T TIGR01970 350 LQADLSGLALE-----LAQWGAKDPSD-LRW----------LDAPPS----------------VALAAARQLLQRLGALD 397 (819)
T ss_pred eccCcHHHHHH-----HHHcCCCChhh-CCC----------CCCcCH----------------HHHHHHHHHHHHCCCCC
Confidence 77777554442 22222222211 111 133432 57889999999999993
Q ss_pred EcCCCcccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHh
Q 000114 1823 IEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLA 1869 (2158)
Q Consensus 1823 ~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils 1869 (2158)
++ -..|.+|+.+|.+++++.-.+++..+....+ ...++.|.|
T Consensus 398 --~~--~~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~-~~~~~~iaa 439 (819)
T TIGR01970 398 --AQ--GRLTAHGKAMAALGCHPRLAAMLLSAHSTGL-AALACDLAA 439 (819)
T ss_pred --CC--CCcCHHHHHHHhcCCCHHHHHHHHHhhhcCC-HHHHHHHHH
Confidence 22 3568899999999999999999987644333 334444444
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-33 Score=323.19 Aligned_cols=344 Identities=19% Similarity=0.275 Sum_probs=265.8
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhh---cCCCceEEEEEcccHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA---SETGVMRAVYIAPLEAL 1402 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~---~~~~~~~~v~IaP~raL 1402 (2158)
+...++..+.. .|..++|+|.++++..+.+.+ |+-.|-||||||.+|..|++-++... .++.+|..||++|||+|
T Consensus 230 fDkqLm~airk~Ey~kptpiq~qalptalsgrd-vigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrel 308 (731)
T KOG0339|consen 230 FDKQLMTAIRKSEYEKPTPIQCQALPTALSGRD-VIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTREL 308 (731)
T ss_pred chHHHHHHHhhhhcccCCccccccccccccccc-chheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHH
Confidence 34556666665 489999999999999998777 99999999999999999999998764 23556799999999999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh---cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC
Q 000114 1403 AKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2158)
Q Consensus 1403 a~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~ 1479 (2158)
|.|++.+.+ +|++..|++++.++|+.+.+.+ +-..+.||||||+++..+... ...++.+++++|+||++.+.+.
T Consensus 309 a~Qi~~eaK-kf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm--Katn~~rvS~LV~DEadrmfdm 385 (731)
T KOG0339|consen 309 ASQIFSEAK-KFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM--KATNLSRVSYLVLDEADRMFDM 385 (731)
T ss_pred HHHHHHHHH-HhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh--hcccceeeeEEEEechhhhhcc
Confidence 999999998 8988889999999998877632 225669999999999998876 4457899999999999999877
Q ss_pred CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHH-HhccCCCceEecCCCCcccccEEEEecccccchHHHHH
Q 000114 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGE-WIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (2158)
Q Consensus 1480 ~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~-wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~ 1557 (2158)
+ +....+.|..+..++.|.+++|||+.- .+.++. +|+.. ..+....-......+...+..+...
T Consensus 386 G------fe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dp-VrvVqg~vgean~dITQ~V~V~~s~------- 451 (731)
T KOG0339|consen 386 G------FEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDP-VRVVQGEVGEANEDITQTVSVCPSE------- 451 (731)
T ss_pred c------cHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCC-eeEEEeehhccccchhheeeeccCc-------
Confidence 7 667778888888899999999999965 333433 34332 2222111111111111111111111
Q ss_pred hcChHHHHHHHHh---HhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcc
Q 000114 1558 AMTKPTFTAIVQH---AKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (2158)
Q Consensus 1558 ~~~k~~~~~i~~~---~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (2158)
...+..+..+ ....+++|+||.-...++.++..|. .-++
T Consensus 452 ---~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lk-----------------------------------lk~~ 493 (731)
T KOG0339|consen 452 ---EKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLK-----------------------------------LKGF 493 (731)
T ss_pred ---HHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhc-----------------------------------cccc
Confidence 1112222222 2456789999999999998886662 1356
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCC
Q 000114 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2158)
Q Consensus 1635 gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g 1714 (2158)
.|..+||.|.+.+|..++..|+.+...|||||+++++|+|+|....|| ++++--++..+.||+||+||.|
T Consensus 494 ~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVv----------nyD~ardIdththrigrtgRag 563 (731)
T KOG0339|consen 494 NVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVV----------NYDFARDIDTHTHRIGRTGRAG 563 (731)
T ss_pred eeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceee----------cccccchhHHHHHHhhhccccc
Confidence 799999999999999999999999999999999999999999999888 6777778999999999999998
Q ss_pred CCCceEEEEEecCChHHHHHHHhh
Q 000114 1715 LDNSGKCVILCHAPRKEYYKKFLY 1738 (2158)
Q Consensus 1715 ~d~~G~~iil~~~~~~~~~~k~l~ 1738 (2158)
..|+++.++++.+.++--.+.+
T Consensus 564 --~kGvayTlvTeKDa~fAG~LVn 585 (731)
T KOG0339|consen 564 --EKGVAYTLVTEKDAEFAGHLVN 585 (731)
T ss_pred --ccceeeEEechhhHHHhhHHHH
Confidence 5699999999887765444433
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=338.64 Aligned_cols=330 Identities=18% Similarity=0.250 Sum_probs=253.2
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.+|..+++||..|||.++.+-+ +||.|..|+|||++|...+++.+... ...+.+++++|||+++.|+...+
T Consensus 43 n~f~~ptkiQaaAIP~~~~kmD-liVQaKSGTGKTlVfsv~av~sl~~~--------~~~~q~~Iv~PTREiaVQI~~tv 113 (980)
T KOG4284|consen 43 NAFALPTKIQAAAIPAIFSKMD-LIVQAKSGTGKTLVFSVLAVESLDSR--------SSHIQKVIVTPTREIAVQIKETV 113 (980)
T ss_pred hcccCCCchhhhhhhhhhcccc-eEEEecCCCCceEEEEeeeehhcCcc--------cCcceeEEEecchhhhhHHHHHH
Confidence 4899999999999999998877 99999999999999998888876543 24568999999999999999999
Q ss_pred Hhhccc-CCcEEEEEeCCCccCHh--hhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc--CChhhHHH
Q 000114 571 SNRLQM-YDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD--NRGPVLES 645 (2158)
Q Consensus 571 ~~~~~~-~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d--~rg~~le~ 645 (2158)
...... .|.++..+.|++..... ..+.++|+|+||+++..|..... ...++++|+|+||||.|.+ .+...+..
T Consensus 114 ~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~--~n~s~vrlfVLDEADkL~~t~sfq~~In~ 191 (980)
T KOG4284|consen 114 RKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGA--MNMSHVRLFVLDEADKLMDTESFQDDINI 191 (980)
T ss_pred HHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcC--CCccceeEEEeccHHhhhchhhHHHHHHH
Confidence 988764 48999999999876543 46789999999999855554432 5678899999999998877 36666665
Q ss_pred HHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccc--cceeEEEeeccC-ChhHHHHHhhHH
Q 000114 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPV--PLSQQYIGIQVK-KPLQRFQLMNDL 722 (2158)
Q Consensus 646 iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv--~l~~~~~~~~~~-~~~~~~~~l~~~ 722 (2158)
|+.. ++...|++++|||-| +.+...|......+.++.-+..-++ .+.+.++..... ...+.+..+...
T Consensus 192 ii~s-------lP~~rQv~a~SATYp--~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~ 262 (980)
T KOG4284|consen 192 IINS-------LPQIRQVAAFSATYP--RNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQK 262 (980)
T ss_pred HHHh-------cchhheeeEEeccCc--hhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHH
Confidence 5543 467789999999988 3444444443344444433332232 344444333222 223333322222
Q ss_pred HHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecC
Q 000114 723 CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802 (2158)
Q Consensus 723 ~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHa 802 (2158)
+..+....+-.|+||||+....|+.+|..|...|+.+ -+..|
T Consensus 263 -L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~-------------------------------------~~ISg 304 (980)
T KOG4284|consen 263 -LTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDV-------------------------------------TFISG 304 (980)
T ss_pred -HHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCe-------------------------------------EEecc
Confidence 2334455567799999999999999999998877554 34489
Q ss_pred CCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEE
Q 000114 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (2158)
Q Consensus 803 gl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (2158)
.|++.+|..+++.++.-..+|||+|+..+||||-|.+++|||-+.|.| -..|+||+|||||- +..|.+
T Consensus 305 aM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d----------~eTY~HRIGRAgRF--G~~G~a 372 (980)
T KOG4284|consen 305 AMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPAD----------EETYFHRIGRAGRF--GAHGAA 372 (980)
T ss_pred ccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcc----------hHHHHHHhhhcccc--ccccee
Confidence 999999999999999999999999999999999999999999554444 44699999999995 488999
Q ss_pred EEEcCCCc
Q 000114 883 IIITGHSE 890 (2158)
Q Consensus 883 iil~~~~~ 890 (2158)
+.++...+
T Consensus 373 VT~~~~~~ 380 (980)
T KOG4284|consen 373 VTLLEDER 380 (980)
T ss_pred EEEeccch
Confidence 99887754
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=359.74 Aligned_cols=406 Identities=16% Similarity=0.185 Sum_probs=282.5
Q ss_pred HHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCc
Q 000114 1350 FTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGET 1429 (2158)
Q Consensus 1350 ~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~ 1429 (2158)
+.++ .++.++++.||||||||+++.++++..... .+ ++++++|+|++|.|+++++.+.++...|..|+..++..
T Consensus 14 ~~~l-~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~--~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~ 87 (812)
T PRK11664 14 LTAL-KTAPQVLLKAPTGAGKSTWLPLQLLQHGGI---NG--KIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAE 87 (812)
T ss_pred HHHH-HhCCCEEEEcCCCCCHHHHHHHHHHHcCCc---CC--eEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCc
Confidence 3344 346679999999999999999999865422 34 89999999999999999998788777788888776643
Q ss_pred chhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEecc
Q 000114 1430 AMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALST 1509 (2158)
Q Consensus 1430 ~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSA 1509 (2158)
... -...+|+|+||+++..++.. ...++++++|||||+|...-.. ...+..+..+.+.++.+.|+|+|||
T Consensus 88 ~~~---~~~t~I~v~T~G~Llr~l~~---d~~L~~v~~IIlDEaHER~l~~----Dl~L~ll~~i~~~lr~~lqlilmSA 157 (812)
T PRK11664 88 SKV---GPNTRLEVVTEGILTRMIQR---DPELSGVGLVILDEFHERSLQA----DLALALLLDVQQGLRDDLKLLIMSA 157 (812)
T ss_pred ccc---CCCCcEEEEChhHHHHHHhh---CCCcCcCcEEEEcCCCcccccc----chHHHHHHHHHHhCCccceEEEEec
Confidence 321 13458999999998776654 4568999999999999632111 1122223334444567899999999
Q ss_pred CCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhH-hcCCCEEEEecChHHHH
Q 000114 1510 SLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNEKPALVFVPSRKYVR 1588 (2158)
Q Consensus 1510 Tl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~-~~~~~~IVFv~sr~~~~ 1588 (2158)
|++. ..+.++++... ++.. ..+..|++.++........ .. ......+...+ ...+.+|||||++++++
T Consensus 158 Tl~~-~~l~~~~~~~~--~I~~--~gr~~pV~~~y~~~~~~~~---~~---~~v~~~l~~~l~~~~g~iLVFlpg~~ei~ 226 (812)
T PRK11664 158 TLDN-DRLQQLLPDAP--VIVS--EGRSFPVERRYQPLPAHQR---FD---EAVARATAELLRQESGSLLLFLPGVGEIQ 226 (812)
T ss_pred CCCH-HHHHHhcCCCC--EEEe--cCccccceEEeccCchhhh---HH---HHHHHHHHHHHHhCCCCEEEEcCCHHHHH
Confidence 9964 46777775322 2222 2244455555433221111 10 01111122222 23688999999999999
Q ss_pred HHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCc
Q 000114 1589 LTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSS 1668 (2158)
Q Consensus 1589 ~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~ 1668 (2158)
.++..|..... .+..|..+||+|+..+|..+++.|.+|+.+|||||++
T Consensus 227 ~l~~~L~~~~~--------------------------------~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnI 274 (812)
T PRK11664 227 RVQEQLASRVA--------------------------------SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNI 274 (812)
T ss_pred HHHHHHHHhcc--------------------------------CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecch
Confidence 99977742110 1234888999999999999999999999999999999
Q ss_pred cccccCCCccEEEEe-c---ceeecCCCCc----CcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhh--
Q 000114 1669 MCWGVPLTAHLVVVM-G---TQYYDGQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLY-- 1738 (2158)
Q Consensus 1669 la~Gvdlp~~~vVI~-g---t~~yd~~~~~----~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~-- 1738 (2158)
+++|||+|++.+||- | ...||+..+. ..++|..+|.||+|||||. ..|.||.+++... |..+..
T Consensus 275 AErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~---~~~l~~~~ 348 (812)
T PRK11664 275 AETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQ---AERAAAQS 348 (812)
T ss_pred HHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHH---HhhCccCC
Confidence 999999999999993 2 2347766543 2357889999999999996 5999999998743 333332
Q ss_pred CCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccHHHHHHHHHHHHHHHHHhC
Q 000114 1739 DAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEAS 1818 (2158)
Q Consensus 1739 ~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~lve~~l~~L~~~ 1818 (2158)
.|+...+.|...+.+ +..-.+.+..+ ++| ...|+- +.++.++..|...
T Consensus 349 ~PEI~r~dL~~~~L~-----l~~~g~~~~~~-~~~----------ld~P~~----------------~~~~~A~~~L~~l 396 (812)
T PRK11664 349 EPEILHSDLSGLLLE-----LLQWGCHDPAQ-LSW----------LDQPPA----------------AALAAAKRLLQQL 396 (812)
T ss_pred CCceeccchHHHHHH-----HHHcCCCCHHh-CCC----------CCCCCH----------------HHHHHHHHHHHHC
Confidence 466677777554442 22222333322 111 133432 6789999999999
Q ss_pred CCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcC
Q 000114 1819 KCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLT 1856 (2158)
Q Consensus 1819 ~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~ 1856 (2158)
|+|. + +...|++|+.++.+++++.-.+++..+..
T Consensus 397 gald--~--~g~lT~~G~~m~~lp~~Prla~~ll~a~~ 430 (812)
T PRK11664 397 GALD--G--QGRLTARGRKMAALGNDPRLAAMLVAAKE 430 (812)
T ss_pred CCCC--C--CCCcCHHHHHHHhcCCchHHHHHHHHHHh
Confidence 9983 3 33568899999999999999999987544
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-33 Score=335.53 Aligned_cols=339 Identities=21% Similarity=0.267 Sum_probs=247.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.||..|+|+|.+|+|.++...+ ++.|||||||||++|.+|++..+..... .....+.+++++.|||+||.|+++++
T Consensus 154 ~~F~~Pt~iq~~aipvfl~~r~-~lAcapTGsgKtlaf~~Pil~~L~~~~~---~~~~~gl~a~Il~ptreLa~Qi~re~ 229 (593)
T KOG0344|consen 154 LGFDEPTPIQKQAIPVFLEKRD-VLACAPTGSGKTLAFNLPILQHLKDLSQ---EKHKVGLRALILSPTRELAAQIYREM 229 (593)
T ss_pred CCCCCCCcccchhhhhhhcccc-eEEeccCCCcchhhhhhHHHHHHHHhhc---ccCccceEEEEecchHHHHHHHHHHH
Confidence 6899999999999998877654 9999999999999999999999987642 11235789999999999999999999
Q ss_pred Hhhc--ccCCcEEEEEeCCCccCHh----hhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHH
Q 000114 571 SNRL--QMYDVKVRELSGDQTLTRQ----QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644 (2158)
Q Consensus 571 ~~~~--~~~gi~v~~l~Gd~~~~~~----~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le 644 (2158)
.++. ...+.++..+........+ ....++|+|+||-++-.+.........+..|.++|+||++++.+. ..+-
T Consensus 230 ~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~--~~f~ 307 (593)
T KOG0344|consen 230 RKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEP--EFFV 307 (593)
T ss_pred HhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhCh--hhHH
Confidence 9987 5556666666655333222 235789999999986444444332346788999999999999764 1122
Q ss_pred HHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCccc---ccceeEEEeeccCChhHHHHHhhH
Q 000114 645 SIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRP---VPLSQQYIGIQVKKPLQRFQLMND 721 (2158)
Q Consensus 645 ~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rp---v~l~~~~~~~~~~~~~~~~~~l~~ 721 (2158)
.-++.+.... ..+++++-++|||++ ..+.+|........... .-..++ ..+.+..+++... . .++.++.+
T Consensus 308 ~Qla~I~sac--~s~~i~~a~FSat~~--~~VEE~~~~i~~~~~~v-ivg~~~sa~~~V~QelvF~gse-~-~K~lA~rq 380 (593)
T KOG0344|consen 308 EQLADIYSAC--QSPDIRVALFSATIS--VYVEEWAELIKSDLKRV-IVGLRNSANETVDQELVFCGSE-K-GKLLALRQ 380 (593)
T ss_pred HHHHHHHHHh--cCcchhhhhhhcccc--HHHHHHHHHhhccceeE-EEecchhHhhhhhhhheeeecc-h-hHHHHHHH
Confidence 2223332222 247889999999987 67888887653322111 111121 1122222211111 1 11222111
Q ss_pred HHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEec
Q 000114 722 LCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHH 801 (2158)
Q Consensus 722 ~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hH 801 (2158)
+....-..|++||+.+...|..+...|.. + -...|++.|
T Consensus 381 -----~v~~g~~PP~lIfVQs~eRak~L~~~L~~--~----------------------------------~~i~v~vIh 419 (593)
T KOG0344|consen 381 -----LVASGFKPPVLIFVQSKERAKQLFEELEI--Y----------------------------------DNINVDVIH 419 (593)
T ss_pred -----HHhccCCCCeEEEEecHHHHHHHHHHhhh--c----------------------------------cCcceeeEe
Confidence 12222367999999999999998887741 0 012477889
Q ss_pred CCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccE
Q 000114 802 AGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881 (2158)
Q Consensus 802 agl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~ 881 (2158)
|..++.+|..+++.|+.|+++||+||++++||+|+.+++.||| ||.+. |...|+||+||+||+| ..|.
T Consensus 420 ~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn----yD~p~------s~~syihrIGRtgRag--~~g~ 487 (593)
T KOG0344|consen 420 GERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN----YDFPQ------SDLSYIHRIGRTGRAG--RSGK 487 (593)
T ss_pred cccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe----cCCCc------hhHHHHHHhhccCCCC--CCcc
Confidence 9999999999999999999999999999999999999999999 88877 8889999999999998 7899
Q ss_pred EEEEcCCCcHHHHH
Q 000114 882 GIIITGHSELRYYL 895 (2158)
Q Consensus 882 ~iil~~~~~~~~y~ 895 (2158)
||.+++..+..+..
T Consensus 488 Aitfytd~d~~~ir 501 (593)
T KOG0344|consen 488 AITFYTDQDMPRIR 501 (593)
T ss_pred eEEEeccccchhhh
Confidence 99999997766554
|
|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=352.60 Aligned_cols=364 Identities=21% Similarity=0.331 Sum_probs=274.3
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.||..+++||.+|||+++.+++ +|..|-||||||++|+||+++++...+... ..+++.+|+++||++|+.|+.+.+
T Consensus 383 l~y~k~~~IQ~qAiP~ImsGrd-vIgvakTgSGKT~af~LPmirhi~dQr~~~---~gdGPi~li~aPtrela~QI~r~~ 458 (997)
T KOG0334|consen 383 LGYEKPTPIQAQAIPAIMSGRD-VIGVAKTGSGKTLAFLLPMIRHIKDQRPLE---EGDGPIALILAPTRELAMQIHREV 458 (997)
T ss_pred hcCCCCcchhhhhcchhccCcc-eEEeeccCCccchhhhcchhhhhhcCCChh---hCCCceEEEEcCCHHHHHHHHHHH
Confidence 3899999999999999999877 999999999999999999999887655432 125889999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccccc-CChhhHHH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLES 645 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~ 645 (2158)
+.+++.+|+++...+|+...+.+. ...+.|+||||+++ |.+.-..+....+.++-++|+||+|.|.+ .+-|..-.
T Consensus 459 ~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~ 538 (997)
T KOG0334|consen 459 RKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITR 538 (997)
T ss_pred HHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccch
Confidence 999999999999999999877654 35799999999996 88887777667777788999999999998 67777766
Q ss_pred HHHHHHHHHhhccccccEEEEccccCCh-HHHHHHHhccccCceEEecCCcc-cccceeEEEeeccCChhHHHHHhhHHH
Q 000114 646 IVARTVRQIETTKEHIRLVGLSATLPNY-EDVALFLRVNLEKGLFYFDNSYR-PVPLSQQYIGIQVKKPLQRFQLMNDLC 723 (2158)
Q Consensus 646 iv~r~~~~~~~~~~~~riv~lSATlpn~-~dv~~~l~~~~~~~~~~f~~~~r-pv~l~~~~~~~~~~~~~~~~~~l~~~~ 723 (2158)
|+.++ .+..|.+.+|||+|.. +.++.-+...|.. ..+...-. .-.+.+.+..... ...++..+.+
T Consensus 539 Ii~nl-------rpdrQtvlfSatfpr~m~~la~~vl~~Pve--iiv~~~svV~k~V~q~v~V~~~--e~eKf~kL~e-- 605 (997)
T KOG0334|consen 539 ILQNL-------RPDRQTVLFSATFPRSMEALARKVLKKPVE--IIVGGRSVVCKEVTQVVRVCAI--ENEKFLKLLE-- 605 (997)
T ss_pred HHhhc-------chhhhhhhhhhhhhHHHHHHHHHhhcCCee--EEEccceeEeccceEEEEEecC--chHHHHHHHH--
Confidence 65544 6788999999999853 2333333322211 22221111 1122223322221 1122222222
Q ss_pred HHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCC
Q 000114 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG 803 (2158)
Q Consensus 724 ~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHag 803 (2158)
.+.+.....++||||.+...|..+.+.|...++.+..+ |||
T Consensus 606 --Ll~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~sl-------------------------------------HGg 646 (997)
T KOG0334|consen 606 --LLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSL-------------------------------------HGG 646 (997)
T ss_pred --HHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhh-------------------------------------cCC
Confidence 23333447899999999999999999999877665443 999
Q ss_pred CCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEE
Q 000114 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (2158)
Q Consensus 804 l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (2158)
.++.+|..+++.|++|.+++||||+++++|+|++...+||+ ||.+. -..+|+||+||+||.| .+|.|+
T Consensus 647 v~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn----yd~pn------h~edyvhR~gRTgrag--rkg~Av 714 (997)
T KOG0334|consen 647 VDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVN----YDFPN------HYEDYVHRVGRTGRAG--RKGAAV 714 (997)
T ss_pred CchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEE----cccch------hHHHHHHHhcccccCC--ccceeE
Confidence 99999999999999999999999999999999999999999 88776 4567999999999998 789999
Q ss_pred EEcCCCcHHHHHH----hhcCCCcccchhhHhhHHHHHHHHHhc
Q 000114 884 IITGHSELRYYLS----LMNQQLPIESQFVSKLADQLNAEIVLG 923 (2158)
Q Consensus 884 il~~~~~~~~y~~----ll~~~~pieS~l~~~l~d~lnaeI~~~ 923 (2158)
.|.++.+..+--. +.....|+. .++..+..-..++...|
T Consensus 715 tFi~p~q~~~a~dl~~al~~~~~~~P-~~l~~l~~~f~~~~~~~ 757 (997)
T KOG0334|consen 715 TFITPDQLKYAGDLCKALELSKQPVP-KLLQALSERFKAKQKAG 757 (997)
T ss_pred EEeChHHhhhHHHHHHHHHhccCCCc-hHHHHHHHHHHhhhhcc
Confidence 9999855443221 222222222 55555555555555544
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=356.92 Aligned_cols=314 Identities=17% Similarity=0.249 Sum_probs=229.2
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcC-----CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHH
Q 000114 1332 YEALYQGFKHFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2158)
Q Consensus 1332 ~~~l~~gf~~~~~iQ~q~~~~l~~~-----~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~ 1406 (2158)
+...|+ | .+||+|.+|++.++++ ..+++++||||||||.+|++|++..+.. +. +++|++||++||.|+
T Consensus 444 ~~~~~~-f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g~--qvlvLvPT~~LA~Q~ 516 (926)
T TIGR00580 444 FEDSFP-F-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---GK--QVAVLVPTTLLAQQH 516 (926)
T ss_pred HHHhCC-C-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---CC--eEEEEeCcHHHHHHH
Confidence 444443 6 5999999999999874 3579999999999999999999988765 34 899999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEcCCcchhh-----hccc--CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC
Q 000114 1407 YRDWEIKFGQGLGMRVVELTGETAMDL-----KLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2158)
Q Consensus 1407 ~~~~~~~f~~~~g~~v~~ltG~~~~~~-----~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~ 1479 (2158)
++.+++.|+. .++++..++|..+... +.+. +.+|||+||.. +. ....+++++++||||+|+++..
T Consensus 517 ~~~f~~~~~~-~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l~---~~v~f~~L~llVIDEahrfgv~ 588 (926)
T TIGR00580 517 FETFKERFAN-FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----LQ---KDVKFKDLGLLIIDEEQRFGVK 588 (926)
T ss_pred HHHHHHHhcc-CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----hh---CCCCcccCCEEEeecccccchh
Confidence 9999987775 4789999998765431 1222 46999999953 22 2345789999999999987421
Q ss_pred CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHH-hccCCCceEecCCCCcccccEEEEecccccchHHHHHh
Q 000114 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEW-IGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQA 1558 (2158)
Q Consensus 1480 ~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~w-l~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~ 1558 (2158)
....+ .....++++++||||+.+ +.+... .+.....++...|..| .++...+....
T Consensus 589 -------~~~~L----~~~~~~~~vL~~SATpip-rtl~~~l~g~~d~s~I~~~p~~R-~~V~t~v~~~~---------- 645 (926)
T TIGR00580 589 -------QKEKL----KELRTSVDVLTLSATPIP-RTLHMSMSGIRDLSIIATPPEDR-LPVRTFVMEYD---------- 645 (926)
T ss_pred -------HHHHH----HhcCCCCCEEEEecCCCH-HHHHHHHhcCCCcEEEecCCCCc-cceEEEEEecC----------
Confidence 11222 233567899999999643 333332 3333333444444333 23333332211
Q ss_pred cChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEE
Q 000114 1559 MTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGY 1638 (2158)
Q Consensus 1559 ~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~ 1638 (2158)
.......+...+..+++++||||+++.+..++..|... .....|+.
T Consensus 646 -~~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~---------------------------------~p~~~v~~ 691 (926)
T TIGR00580 646 -PELVREAIRRELLRGGQVFYVHNRIESIEKLATQLREL---------------------------------VPEARIAI 691 (926)
T ss_pred -HHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHh---------------------------------CCCCeEEE
Confidence 01223344455567899999999999998888665321 11346899
Q ss_pred ecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCc
Q 000114 1639 LHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNS 1718 (2158)
Q Consensus 1639 ~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~ 1718 (2158)
+||+|++.+|..+++.|++|+++|||||+++++|||+|++.+||. ++.. .+...+|.||+||+||.| ..
T Consensus 692 lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi----~~a~-----~~gls~l~Qr~GRvGR~g--~~ 760 (926)
T TIGR00580 692 AHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII----ERAD-----KFGLAQLYQLRGRVGRSK--KK 760 (926)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE----ecCC-----CCCHHHHHHHhcCCCCCC--CC
Confidence 999999999999999999999999999999999999999888771 2211 235789999999999986 79
Q ss_pred eEEEEEecCC
Q 000114 1719 GKCVILCHAP 1728 (2158)
Q Consensus 1719 G~~iil~~~~ 1728 (2158)
|.|++++...
T Consensus 761 g~aill~~~~ 770 (926)
T TIGR00580 761 AYAYLLYPHQ 770 (926)
T ss_pred eEEEEEECCc
Confidence 9999998764
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=363.30 Aligned_cols=309 Identities=23% Similarity=0.307 Sum_probs=219.9
Q ss_pred CCCCCCHHHHHHHHHHHcCC-----CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSA-----DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~-----~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~ 566 (2158)
+| +||++|.+|++.+..+. .|+|++||||||||.+|++|++..+.. +.+++|++||++||.|+
T Consensus 259 ~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~-----------g~q~lilaPT~~LA~Q~ 326 (681)
T PRK10917 259 PF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA-----------GYQAALMAPTEILAEQH 326 (681)
T ss_pred CC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-----------CCeEEEEeccHHHHHHH
Confidence 35 69999999999988763 379999999999999999999988753 35899999999999999
Q ss_pred HHHHHhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCC
Q 000114 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (2158)
Q Consensus 567 ~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~r 639 (2158)
++.+++++..+|+++..++|+.+...+. ...++|+|+||+.+. ....+.+++++||||+|+++...
T Consensus 327 ~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~-------~~v~~~~l~lvVIDE~Hrfg~~q 399 (681)
T PRK10917 327 YENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQ-------DDVEFHNLGLVIIDEQHRFGVEQ 399 (681)
T ss_pred HHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhc-------ccchhcccceEEEechhhhhHHH
Confidence 9999999999999999999998754321 236899999998652 11346789999999999874321
Q ss_pred hhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHh
Q 000114 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLM 719 (2158)
Q Consensus 640 g~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l 719 (2158)
... +......+++++||||+. ...++.............-.+..| .++...+.. .....
T Consensus 400 ----r~~-------l~~~~~~~~iL~~SATp~-prtl~~~~~g~~~~s~i~~~p~~r-~~i~~~~~~--~~~~~------ 458 (681)
T PRK10917 400 ----RLA-------LREKGENPHVLVMTATPI-PRTLAMTAYGDLDVSVIDELPPGR-KPITTVVIP--DSRRD------ 458 (681)
T ss_pred ----HHH-------HHhcCCCCCEEEEeCCCC-HHHHHHHHcCCCceEEEecCCCCC-CCcEEEEeC--cccHH------
Confidence 111 112244688999999953 344433222111110110001111 123332221 11111
Q ss_pred hHHHHHHHHHH-hCCCeEEEEecChHHHHH--------HHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhh
Q 000114 720 NDLCYEKVVAV-AGKHQVLIFVHSRKETAK--------TARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2158)
Q Consensus 720 ~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~--------~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 790 (2158)
.+++.+.+. ..+++++|||+..++.+. +++.|...
T Consensus 459 --~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~---------------------------------- 502 (681)
T PRK10917 459 --EVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEA---------------------------------- 502 (681)
T ss_pred --HHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHH----------------------------------
Confidence 112222222 347799999997654432 22222211
Q ss_pred hhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcc
Q 000114 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (2158)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GR 870 (2158)
+....++.+||+|+..+|..+++.|++|+++|||||+++++|||+|++++||+ |+++. ++...+.||+||
T Consensus 503 -~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi----~~~~r-----~gls~lhQ~~GR 572 (681)
T PRK10917 503 -FPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVI----ENAER-----FGLAQLHQLRGR 572 (681)
T ss_pred -CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEE----eCCCC-----CCHHHHHHHhhc
Confidence 11256899999999999999999999999999999999999999999999998 77664 367889999999
Q ss_pred cCCCCCCCccEEEEEcCC
Q 000114 871 AGRPQYDSYGEGIIITGH 888 (2158)
Q Consensus 871 AGR~g~d~~G~~iil~~~ 888 (2158)
+||.| ..|.|+++++.
T Consensus 573 vGR~g--~~g~~ill~~~ 588 (681)
T PRK10917 573 VGRGA--AQSYCVLLYKD 588 (681)
T ss_pred ccCCC--CceEEEEEECC
Confidence 99987 67999999964
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-32 Score=365.53 Aligned_cols=438 Identities=16% Similarity=0.164 Sum_probs=274.4
Q ss_pred HHHHHHcCCCcEEEEccCCCchHHHHHHHHH-HHHHhccCCCCCCCCCCcEEEEEcccH----HHHHHHHHHHHhhcccC
Q 000114 503 VYKSALSSADNILLCAPTGAGKTNVAVLTIL-QQLALNRNDDGSFNHSNYKIVYVAPMK----ALVAEVVGNLSNRLQMY 577 (2158)
Q Consensus 503 ~i~~~l~~~~nvlv~APTGsGKT~~a~l~il-~~l~~~~~~~~~~~~~~~kil~iaP~k----aLa~q~~~~~~~~~~~~ 577 (2158)
.|..++.+++.++|+|+||||||.. +|.+ .....+ ...+|++..|.+ +||.++...+... +
T Consensus 81 ~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~g---------~~g~I~~TQPRRlAArsLA~RVA~El~~~---l 146 (1294)
T PRK11131 81 DILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGRG---------VKGLIGHTQPRRLAARTVANRIAEELETE---L 146 (1294)
T ss_pred HHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCCC---------CCCceeeCCCcHHHHHHHHHHHHHHHhhh---h
Confidence 4445567778799999999999994 5632 222111 122677788865 5555555555432 2
Q ss_pred CcEEEEEeCCCccCHhhhccccEEEcchhHH-HHHHhccCCCccccccceEEeecccc-ccc-CChhhHHHHHHHHHHHH
Q 000114 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL-LHD-NRGPVLESIVARTVRQI 654 (2158)
Q Consensus 578 gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~-l~d-~rg~~le~iv~r~~~~~ 654 (2158)
|-.|+.-+ ..+.+...+++|+|+||+.+ +.+.+ ...++++++|||||||. ..+ ++ +..++.++ .
T Consensus 147 G~~VGY~v---rf~~~~s~~t~I~v~TpG~LL~~l~~----d~~Ls~~~~IIIDEAHERsLn~Df---LLg~Lk~l---L 213 (1294)
T PRK11131 147 GGCVGYKV---RFNDQVSDNTMVKLMTDGILLAEIQQ----DRLLMQYDTIIIDEAHERSLNIDF---ILGYLKEL---L 213 (1294)
T ss_pred cceeceee---cCccccCCCCCEEEEChHHHHHHHhc----CCccccCcEEEecCccccccccch---HHHHHHHh---h
Confidence 33333222 22333345799999999986 33332 24589999999999993 433 22 11222222 1
Q ss_pred hhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHH--HhC
Q 000114 655 ETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA--VAG 732 (2158)
Q Consensus 655 ~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~--~~~ 732 (2158)
...++.|+|++|||++ .+.+++++.. .+++...+...| +...+..............+.. +...+.. ...
T Consensus 214 -~~rpdlKvILmSATid-~e~fs~~F~~---apvI~V~Gr~~p--Vei~y~p~~~~~~~~~~d~l~~-ll~~V~~l~~~~ 285 (1294)
T PRK11131 214 -PRRPDLKVIITSATID-PERFSRHFNN---APIIEVSGRTYP--VEVRYRPIVEEADDTERDQLQA-IFDAVDELGREG 285 (1294)
T ss_pred -hcCCCceEEEeeCCCC-HHHHHHHcCC---CCEEEEcCcccc--ceEEEeecccccchhhHHHHHH-HHHHHHHHhcCC
Confidence 1235789999999985 5677776653 334444443334 4444443322111001111111 1111211 223
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHH
Q 000114 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2158)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v 812 (2158)
.+++||||+++.++..++..|...+... ..|..+||+|+..+|..+
T Consensus 286 ~GdILVFLpg~~EIe~lae~L~~~~~~~----------------------------------~~VlpLhg~Ls~~eQ~~V 331 (1294)
T PRK11131 286 PGDILIFMSGEREIRDTADALNKLNLRH----------------------------------TEILPLYARLSNSEQNRV 331 (1294)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHhcCCCc----------------------------------ceEeecccCCCHHHHHHH
Confidence 6789999999999999999997643211 125567999999999999
Q ss_pred HHHHhCCCceEEEechhhhhccCCCceEEEEecc----cccCCCCCc----cccCCHHHHHHhhcccCCCCCCCccEEEE
Q 000114 813 EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGII 884 (2158)
Q Consensus 813 ~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~----~~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~ii 884 (2158)
++. .|..+|||||+++++|||+|++++||+++ ..||+.+|. ..++|..+|.||+|||||. ..|.||.
T Consensus 332 f~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~r 406 (1294)
T PRK11131 332 FQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIR 406 (1294)
T ss_pred hcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEE
Confidence 886 57899999999999999999999999974 467877651 2467889999999999997 4799999
Q ss_pred EcCCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhH
Q 000114 885 ITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITL 964 (2158)
Q Consensus 885 l~~~~~~~~y~~ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l 964 (2158)
+++..+...... ++...-+...|...+..-..+|. . +..+| . .+
T Consensus 407 Lyte~d~~~~~~-----~~~PEIlR~~L~~viL~lk~lgl-~---di~~F-----------------~----------fl 450 (1294)
T PRK11131 407 LYSEDDFLSRPE-----FTDPEILRTNLASVILQMTALGL-G---DIAAF-----------------P----------FV 450 (1294)
T ss_pred eCCHHHHHhhhc-----ccCCccccCCHHHHHHHHHHcCC-C---Cccee-----------------e----------CC
Confidence 998765433221 11111111222222222111211 1 11111 0 01
Q ss_pred HHHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcC
Q 000114 965 GERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTV 1044 (2158)
Q Consensus 965 ~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~ 1044 (2158)
..+-.+.|..|+..|...|+|+.+..++...+|++|+.||.+|++|...+++..+....|. .+++.|.|+-+ ..+...
T Consensus 451 dpP~~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~-~evl~IaA~Ls-v~dpf~ 528 (1294)
T PRK11131 451 EAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCV-REVMIITSALS-IQDPRE 528 (1294)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCH-HHHHHHHHHHc-CCCccc
Confidence 1111256889999999999998654334568999999999999999999999988776664 56666655433 356667
Q ss_pred ChhHHHHH
Q 000114 1045 RQDEKMEL 1052 (2158)
Q Consensus 1045 r~~e~~~l 1052 (2158)
|+.++.+-
T Consensus 529 ~p~~~~~~ 536 (1294)
T PRK11131 529 RPMDKQQA 536 (1294)
T ss_pred CCchhHHH
Confidence 77666543
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-32 Score=360.92 Aligned_cols=312 Identities=23% Similarity=0.328 Sum_probs=219.9
Q ss_pred CCCCCCHHHHHHHHHHHcCC-----CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSA-----DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~-----~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~ 566 (2158)
+| +||++|.+|++.++.+- .|.|++||||||||.+|+++++..+.. +.+++|++||++||.|+
T Consensus 233 pf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~-----------g~qvlilaPT~~LA~Q~ 300 (630)
T TIGR00643 233 PF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA-----------GYQVALMAPTEILAEQH 300 (630)
T ss_pred CC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-----------CCcEEEECCHHHHHHHH
Confidence 46 79999999999988752 268999999999999999999998764 34799999999999999
Q ss_pred HHHHHhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCC
Q 000114 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (2158)
Q Consensus 567 ~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~r 639 (2158)
++.++++++.+|+++..++|+.....+. ...++|+|+||+.+. . ...+.++++|||||+|+++...
T Consensus 301 ~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~---~----~~~~~~l~lvVIDEaH~fg~~q 373 (630)
T TIGR00643 301 YNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQ---E----KVEFKRLALVIIDEQHRFGVEQ 373 (630)
T ss_pred HHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHh---c----cccccccceEEEechhhccHHH
Confidence 9999999998999999999998765422 235799999999642 1 1346789999999999875321
Q ss_pred hhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHh
Q 000114 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLM 719 (2158)
Q Consensus 640 g~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l 719 (2158)
... +.. . . .....+++++||||+.. ..++...............+.. ..++...+. .... +
T Consensus 374 r~~---l~~-~---~-~~~~~~~~l~~SATp~p-rtl~l~~~~~l~~~~i~~~p~~-r~~i~~~~~--~~~~---~---- 434 (630)
T TIGR00643 374 RKK---LRE-K---G-QGGFTPHVLVMSATPIP-RTLALTVYGDLDTSIIDELPPG-RKPITTVLI--KHDE---K---- 434 (630)
T ss_pred HHH---HHH-h---c-ccCCCCCEEEEeCCCCc-HHHHHHhcCCcceeeeccCCCC-CCceEEEEe--Ccch---H----
Confidence 111 111 0 0 01126789999999543 3333322111111000000111 122332222 1111 1
Q ss_pred hHHHHHHHHHH-hCCCeEEEEecChHHHHHH--------HHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhh
Q 000114 720 NDLCYEKVVAV-AGKHQVLIFVHSRKETAKT--------ARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2158)
Q Consensus 720 ~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~--------a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 790 (2158)
..++..+.+. ..+++++|||+...+.+.+ ++.|.+.
T Consensus 435 -~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~---------------------------------- 479 (630)
T TIGR00643 435 -DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKA---------------------------------- 479 (630)
T ss_pred -HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhh----------------------------------
Confidence 2233334433 3478999999987554332 2222110
Q ss_pred hhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcc
Q 000114 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (2158)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GR 870 (2158)
+....|+.+||+|+..+|..+++.|++|+++|||||+++++|||+|++++||+ |+++. ++...|.||+||
T Consensus 480 -~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi----~~~~r-----~gls~lhQ~~GR 549 (630)
T TIGR00643 480 -FPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI----EDAER-----FGLSQLHQLRGR 549 (630)
T ss_pred -CCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE----eCCCc-----CCHHHHHHHhhh
Confidence 12356899999999999999999999999999999999999999999999998 66664 367899999999
Q ss_pred cCCCCCCCccEEEEEcCC
Q 000114 871 AGRPQYDSYGEGIIITGH 888 (2158)
Q Consensus 871 AGR~g~d~~G~~iil~~~ 888 (2158)
|||.| ..|.|++++..
T Consensus 550 vGR~g--~~g~~il~~~~ 565 (630)
T TIGR00643 550 VGRGD--HQSYCLLVYKN 565 (630)
T ss_pred cccCC--CCcEEEEEECC
Confidence 99976 67999999843
|
|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=313.99 Aligned_cols=339 Identities=18% Similarity=0.250 Sum_probs=247.6
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc----CCCceEEEEEcccH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS----ETGVMRAVYIAPLE 1400 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~----~~~~~~~v~IaP~r 1400 (2158)
+|....++++-. ||..||-||+.||+.++++.+ ++..|.||||||.+|++|+++.+.... ...++.+++++|||
T Consensus 25 gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKD-vvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTk 103 (569)
T KOG0346|consen 25 GLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKD-VVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTK 103 (569)
T ss_pred CCCHHHHHHHHHhCcCCcchhhhcccchhhcCcc-eeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechH
Confidence 345566677766 899999999999999999775 999999999999999999999987642 12246899999999
Q ss_pred HHHHHHHHHHHHHhcCCC--CcEEEEEcCCcch---hhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccc
Q 000114 1401 ALAKERYRDWEIKFGQGL--GMRVVELTGETAM---DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL 1475 (2158)
Q Consensus 1401 aLa~q~~~~~~~~f~~~~--g~~v~~ltG~~~~---~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~ 1475 (2158)
+||.|+|+.+. ++.... .+++.-++.+.+. ..-+...++|+|+||.++..++..- .-..+..++++|+||||+
T Consensus 104 EL~qQvy~vie-kL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~-~~~~~~~l~~LVvDEADL 181 (569)
T KOG0346|consen 104 ELAQQVYKVIE-KLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAG-VLEYLDSLSFLVVDEADL 181 (569)
T ss_pred HHHHHHHHHHH-HHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhc-cchhhhheeeEEechhhh
Confidence 99999999988 444332 2455555544332 2335567899999999988776542 124678899999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HHHHHHhccCCCceEecCCCCcc--cccEEEEecccccch
Q 000114 1476 IGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRP--VPLEIHIQGVDITNF 1552 (2158)
Q Consensus 1476 l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~dl~~wl~~~~~~i~~f~~~~rp--v~l~~~i~~~~~~~~ 1552 (2158)
+..-+ +-..|+.+.+.+|+..|.++||||+.+. ..+...+ .....+..+....-| -.+..+.......+.
T Consensus 182 llsfG------Yeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~-l~nPviLkl~e~el~~~dqL~Qy~v~cse~DK 254 (569)
T KOG0346|consen 182 LLSFG------YEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLF-LHNPVILKLTEGELPNPDQLTQYQVKCSEEDK 254 (569)
T ss_pred hhhcc------cHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHh-ccCCeEEEeccccCCCcccceEEEEEeccchh
Confidence 98655 4456777778889999999999999752 3333332 222233444333333 233333222221111
Q ss_pred HHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHh
Q 000114 1553 EARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (2158)
Q Consensus 1553 ~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (2158)
.... | ++...---.+++||||||...|-.+-..| +-+
T Consensus 255 flll-------y-allKL~LI~gKsliFVNtIdr~YrLkLfL-----------------------------------eqF 291 (569)
T KOG0346|consen 255 FLLL-------Y-ALLKLRLIRGKSLIFVNTIDRCYRLKLFL-----------------------------------EQF 291 (569)
T ss_pred HHHH-------H-HHHHHHHhcCceEEEEechhhhHHHHHHH-----------------------------------HHh
Confidence 1111 1 11111123678999999999997665333 223
Q ss_pred cccEEEecCCCCHHHHHHHHHHHHcCCceEEEecC-----------------------------------ccccccCCCc
Q 000114 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSS-----------------------------------SMCWGVPLTA 1677 (2158)
Q Consensus 1633 ~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~-----------------------------------~la~Gvdlp~ 1677 (2158)
+...+++.|.|+..-|--+++.|..|-.+++|||+ -.+||||+..
T Consensus 292 GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~ 371 (569)
T KOG0346|consen 292 GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHH 371 (569)
T ss_pred CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchh
Confidence 44457889999999999999999999999999998 1468999999
Q ss_pred cEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCCh
Q 000114 1678 HLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1678 ~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~ 1729 (2158)
+..|| |++.|-+...|+||+||++|++ +.|.++.|+.+.+
T Consensus 372 V~~Vl----------NFD~P~t~~sYIHRvGRTaRg~--n~GtalSfv~P~e 411 (569)
T KOG0346|consen 372 VSNVL----------NFDFPETVTSYIHRVGRTARGN--NKGTALSFVSPKE 411 (569)
T ss_pred eeeee----------ecCCCCchHHHHHhccccccCC--CCCceEEEecchH
Confidence 99999 8889999999999999999986 8899999998765
|
|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=320.46 Aligned_cols=387 Identities=19% Similarity=0.283 Sum_probs=270.2
Q ss_pred EEEEEEeccCCCCCeEEEEEecccccC-CCcccccccccccCCCCCCCCCcCCCCCCCcccccChhHHHHHhc-CCCCCC
Q 000114 1266 SLNFTVPIYEPLPPQYFIRVVSDKWLG-SQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFN 1343 (2158)
Q Consensus 1266 ~~~f~vp~~~p~p~~y~v~~vSd~wlg-~e~~~~i~~~~l~lp~~~~~~t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~ 1343 (2158)
-++++-|+...+.|.-+|+-+|..-.. ...+..|...+-..| || + ..+.--.++.+.++.+-. |+.+||
T Consensus 124 Gi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ip----PP--I---ksF~eMKFP~~~L~~lk~KGI~~PT 194 (610)
T KOG0341|consen 124 GITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIP----PP--I---KSFKEMKFPKPLLRGLKKKGIVHPT 194 (610)
T ss_pred CCcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCC----Cc--h---hhhhhccCCHHHHHHHHhcCCCCCC
Confidence 356777777666666666666653211 112222322222222 11 1 111111234455666655 899999
Q ss_pred HHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhh------cCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1344 PIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA------SETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1344 ~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~------~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
|||.|-++.++.+++ .|-.|-||||||++|.||++-...+. ..+.+|-.++|+|+|+||.|++..+...+..+
T Consensus 195 pIQvQGlPvvLsGRD-mIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L 273 (610)
T KOG0341|consen 195 PIQVQGLPVVLSGRD-MIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAAL 273 (610)
T ss_pred ceeecCcceEeecCc-eeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999777 99999999999999999987655443 12335689999999999999998877444322
Q ss_pred -----CCcEEEEEcCCcchh--hhcccCC-cEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHH
Q 000114 1418 -----LGMRVVELTGETAMD--LKLLEKG-QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVS 1489 (2158)
Q Consensus 1418 -----~g~~v~~ltG~~~~~--~~~l~~~-~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~is 1489 (2158)
..++...+.|+.+.. ...++.+ +|+|+||+++.+++.+ ....+.-.+++.+|||+++.+.+ +-.
T Consensus 274 ~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K--K~~sLd~CRyL~lDEADRmiDmG------FEd 345 (610)
T KOG0341|consen 274 QEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK--KIMSLDACRYLTLDEADRMIDMG------FED 345 (610)
T ss_pred HhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH--hhccHHHHHHhhhhhHHHHhhcc------chh
Confidence 246777888887754 3344444 9999999999988876 33457788999999999998876 444
Q ss_pred HHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHH---hcChHHHHH
Q 000114 1490 RMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ---AMTKPTFTA 1566 (2158)
Q Consensus 1490 rl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~---~~~k~~~~~ 1566 (2158)
.++.+...+....|.+++|||+|.- +..|-. +.-+.|+.+.+.-.+...-+..+... .-++-.|
T Consensus 346 dir~iF~~FK~QRQTLLFSATMP~K--IQ~FAk---------SALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVy-- 412 (610)
T KOG0341|consen 346 DIRTIFSFFKGQRQTLLFSATMPKK--IQNFAK---------SALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVY-- 412 (610)
T ss_pred hHHHHHHHHhhhhheeeeeccccHH--HHHHHH---------hhcccceEEecccccccchhHHHHHHHHHhhhhhhh--
Confidence 5555555556678999999999852 222211 22335555555444433333322221 1222222
Q ss_pred HHHhH-hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCH
Q 000114 1567 IVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (2158)
Q Consensus 1567 i~~~~-~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~ 1645 (2158)
++..+ ....|+||||..+..+..+..+|.- -+..+..+|||-.+
T Consensus 413 lLeCLQKT~PpVLIFaEkK~DVD~IhEYLLl-----------------------------------KGVEavaIHGGKDQ 457 (610)
T KOG0341|consen 413 LLECLQKTSPPVLIFAEKKADVDDIHEYLLL-----------------------------------KGVEAVAIHGGKDQ 457 (610)
T ss_pred HHHHhccCCCceEEEeccccChHHHHHHHHH-----------------------------------ccceeEEeecCcch
Confidence 22222 3456799999999988888766621 12236789999999
Q ss_pred HHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEe
Q 000114 1646 TDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2158)
Q Consensus 1646 ~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~ 1725 (2158)
++|....+.|+.|+-+|||||++++.|+|+|++.+|| |++.|-.+..|+||+||+||.| +.|.+..|.
T Consensus 458 edR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVI----------NyDMP~eIENYVHRIGRTGRsg--~~GiATTfI 525 (610)
T KOG0341|consen 458 EDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVI----------NYDMPEEIENYVHRIGRTGRSG--KTGIATTFI 525 (610)
T ss_pred hHHHHHHHHHhcCCCceEEEecchhccCCCccchhhc----------cCCChHHHHHHHHHhcccCCCC--Ccceeeeee
Confidence 9999999999999999999999999999999999999 8888888999999999999987 889999888
Q ss_pred cCChH
Q 000114 1726 HAPRK 1730 (2158)
Q Consensus 1726 ~~~~~ 1730 (2158)
.....
T Consensus 526 NK~~~ 530 (610)
T KOG0341|consen 526 NKNQE 530 (610)
T ss_pred cccch
Confidence 77653
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-31 Score=364.36 Aligned_cols=308 Identities=19% Similarity=0.258 Sum_probs=223.1
Q ss_pred CCCHHHHHHHHHHHcC-----CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSALSS-----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~-----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~ 569 (2158)
.+|++|.+|++.++.+ ..++|+|||||+|||.+|+.+++..+.. +.+++|++||++||.|+++.
T Consensus 600 ~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-----------g~qvlvLvPT~eLA~Q~~~~ 668 (1147)
T PRK10689 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-----------HKQVAVLVPTTLLAQQHYDN 668 (1147)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-----------CCeEEEEeCcHHHHHHHHHH
Confidence 7999999999998876 2469999999999999999998877643 34899999999999999999
Q ss_pred HHhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhh
Q 000114 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (2158)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~ 642 (2158)
|.+++..+++++..++|..+...+. ....+|+|+||+. +. +. ..++++++|||||+|+++..
T Consensus 669 f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~l---L~-~~---v~~~~L~lLVIDEahrfG~~---- 737 (1147)
T PRK10689 669 FRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKL---LQ-SD---VKWKDLGLLIVDEEHRFGVR---- 737 (1147)
T ss_pred HHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHH---Hh-CC---CCHhhCCEEEEechhhcchh----
Confidence 9999988889999999887654432 1368999999973 22 21 34678999999999997321
Q ss_pred HHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHH
Q 000114 643 LESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDL 722 (2158)
Q Consensus 643 le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~ 722 (2158)
.... +...+.++++++||||+++ ..+...+.. .........+.....++...+..+ .... +...
T Consensus 738 ~~e~-------lk~l~~~~qvLl~SATpip-rtl~l~~~g-l~d~~~I~~~p~~r~~v~~~~~~~--~~~~-----~k~~ 801 (1147)
T PRK10689 738 HKER-------IKAMRADVDILTLTATPIP-RTLNMAMSG-MRDLSIIATPPARRLAVKTFVREY--DSLV-----VREA 801 (1147)
T ss_pred HHHH-------HHhcCCCCcEEEEcCCCCH-HHHHHHHhh-CCCcEEEecCCCCCCCceEEEEec--CcHH-----HHHH
Confidence 1111 1234678999999999643 222221111 112222222221222333222211 1100 1111
Q ss_pred HHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecC
Q 000114 723 CYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802 (2158)
Q Consensus 723 ~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHa 802 (2158)
.+.+...+++++||||+++.+..++..|..... ..+|+.+||
T Consensus 802 ---il~el~r~gqv~vf~n~i~~ie~la~~L~~~~p-----------------------------------~~~v~~lHG 843 (1147)
T PRK10689 802 ---ILREILRGGQVYYLYNDVENIQKAAERLAELVP-----------------------------------EARIAIGHG 843 (1147)
T ss_pred ---HHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCC-----------------------------------CCcEEEEeC
Confidence 122233478999999999999999988876421 235788899
Q ss_pred CCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEE
Q 000114 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (2158)
Q Consensus 803 gl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (2158)
+|++.+|..++..|++|+++|||||+++++|||+|++++||. +++.. ++..+|+||+||+||.| ..|.|
T Consensus 844 ~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi----~~ad~-----fglaq~~Qr~GRvGR~g--~~g~a 912 (1147)
T PRK10689 844 QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII----ERADH-----FGLAQLHQLRGRVGRSH--HQAYA 912 (1147)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEE----ecCCC-----CCHHHHHHHhhccCCCC--CceEE
Confidence 999999999999999999999999999999999999999985 33322 35678999999999977 67999
Q ss_pred EEEcCCC
Q 000114 883 IIITGHS 889 (2158)
Q Consensus 883 iil~~~~ 889 (2158)
++++..+
T Consensus 913 ~ll~~~~ 919 (1147)
T PRK10689 913 WLLTPHP 919 (1147)
T ss_pred EEEeCCC
Confidence 9998764
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-31 Score=351.44 Aligned_cols=315 Identities=23% Similarity=0.336 Sum_probs=219.9
Q ss_pred CCCHHHHHHHHHHhcCC-----CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1341 HFNPIQTQVFTVLYNTD-----DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~-----~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
.||++|.+|++.+..+- .|++++||||||||++|++|++..+.. +. +++|++||++||.|+++.+++.+.
T Consensus 261 ~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~--q~lilaPT~~LA~Q~~~~l~~l~~ 335 (681)
T PRK10917 261 ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GY--QAALMAPTEILAEQHYENLKKLLE 335 (681)
T ss_pred CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CC--eEEEEeccHHHHHHHHHHHHHHHh
Confidence 59999999999998742 479999999999999999999987754 33 899999999999999999996665
Q ss_pred CCCCcEEEEEcCCcchhhh-----ccc--CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHH
Q 000114 1416 QGLGMRVVELTGETAMDLK-----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2158)
Q Consensus 1416 ~~~g~~v~~ltG~~~~~~~-----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~i 1488 (2158)
. .|+++..++|+.+...+ .+. .++|+|+||+.+.. ...+++++++||||+|+++... .
T Consensus 336 ~-~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-------~v~~~~l~lvVIDE~Hrfg~~q-------r 400 (681)
T PRK10917 336 P-LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-------DVEFHNLGLVIIDEQHRFGVEQ-------R 400 (681)
T ss_pred h-cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-------cchhcccceEEEechhhhhHHH-------H
Confidence 4 58999999999875321 222 46999999987532 2346889999999999875221 1
Q ss_pred HHHHHHHhhcCCCceEEEeccCCCChHHHHHH-hccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHH
Q 000114 1489 SRMRYIASQVENKIRIVALSTSLANAKDLGEW-IGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAI 1567 (2158)
Q Consensus 1489 srl~~i~~~~~~~~riV~lSATl~n~~dl~~w-l~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i 1567 (2158)
..+. ..+...++++||||+.. +.++.. .+........-.|..|. ++...+.... . ....+..+
T Consensus 401 ~~l~----~~~~~~~iL~~SATp~p-rtl~~~~~g~~~~s~i~~~p~~r~-~i~~~~~~~~--~--------~~~~~~~i 464 (681)
T PRK10917 401 LALR----EKGENPHVLVMTATPIP-RTLAMTAYGDLDVSVIDELPPGRK-PITTVVIPDS--R--------RDEVYERI 464 (681)
T ss_pred HHHH----hcCCCCCEEEEeCCCCH-HHHHHHHcCCCceEEEecCCCCCC-CcEEEEeCcc--c--------HHHHHHHH
Confidence 1111 12446889999999643 333222 22222122222222222 3333322211 1 12234455
Q ss_pred HHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHh-cccEEEecCCCCHH
Q 000114 1568 VQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL-RHGVGYLHEGLNKT 1646 (2158)
Q Consensus 1568 ~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l-~~gv~~~H~~l~~~ 1646 (2158)
...+..+++++|||++.+.++.+. + ....... +.|...+ ...|+.+||+|+..
T Consensus 465 ~~~~~~g~q~~v~~~~ie~s~~l~--~-------------------~~~~~~~-----~~L~~~~~~~~v~~lHG~m~~~ 518 (681)
T PRK10917 465 REEIAKGRQAYVVCPLIEESEKLD--L-------------------QSAEETY-----EELQEAFPELRVGLLHGRMKPA 518 (681)
T ss_pred HHHHHcCCcEEEEEcccccccchh--H-------------------HHHHHHH-----HHHHHHCCCCcEEEEeCCCCHH
Confidence 555577889999999765443210 0 0000001 1122222 35799999999999
Q ss_pred HHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEec
Q 000114 1647 DQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCH 1726 (2158)
Q Consensus 1647 dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~ 1726 (2158)
+|..+++.|++|+++|||||+++++|||+|++.+|| .|++. .+....+.||+||+||.| ..|.|+++++
T Consensus 519 eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VI----i~~~~-----r~gls~lhQ~~GRvGR~g--~~g~~ill~~ 587 (681)
T PRK10917 519 EKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMV----IENAE-----RFGLAQLHQLRGRVGRGA--AQSYCVLLYK 587 (681)
T ss_pred HHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEE----EeCCC-----CCCHHHHHHHhhcccCCC--CceEEEEEEC
Confidence 999999999999999999999999999999999988 33322 135788999999999986 7899999996
Q ss_pred CC
Q 000114 1727 AP 1728 (2158)
Q Consensus 1727 ~~ 1728 (2158)
.+
T Consensus 588 ~~ 589 (681)
T PRK10917 588 DP 589 (681)
T ss_pred CC
Confidence 44
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-31 Score=359.21 Aligned_cols=441 Identities=17% Similarity=0.184 Sum_probs=282.0
Q ss_pred HHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEE
Q 000114 502 RVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581 (2158)
Q Consensus 502 ~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v 581 (2158)
..|..++.+++.++|+||||||||......++.. +. + ...+|++..|.|--|..++.++.+.+ |..+
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~---~~---~----~~~~I~~tQPRRlAA~svA~RvA~el---g~~l 139 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQLPKICLEL---GR---G----SHGLIGHTQPRRLAARTVAQRIAEEL---GTPL 139 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHc---CC---C----CCceEecCCccHHHHHHHHHHHHHHh---CCCc
Confidence 3445567777889999999999999643333321 11 1 12378899999999999998887754 4455
Q ss_pred EEEeCC-CccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccc-cccCChhhHHHHHHHHHHHHhhccc
Q 000114 582 RELSGD-QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL-LHDNRGPVLESIVARTVRQIETTKE 659 (2158)
Q Consensus 582 ~~l~Gd-~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~-l~d~rg~~le~iv~r~~~~~~~~~~ 659 (2158)
+...|- ...+.+...++.|+|+||+.+ .+.......++.+++|||||||. ..+ ...++..+..... ..+
T Consensus 140 G~~VGY~vR~~~~~s~~T~I~~~TdGiL---Lr~l~~d~~L~~~~~IIIDEaHERsL~-----~D~LL~lLk~il~-~rp 210 (1283)
T TIGR01967 140 GEKVGYKVRFHDQVSSNTLVKLMTDGIL---LAETQQDRFLSRYDTIIIDEAHERSLN-----IDFLLGYLKQLLP-RRP 210 (1283)
T ss_pred ceEEeeEEcCCcccCCCceeeeccccHH---HHHhhhCcccccCcEEEEcCcchhhcc-----chhHHHHHHHHHh-hCC
Confidence 555552 344444456789999999975 22222235688999999999993 332 2222222222222 245
Q ss_pred cccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCC---hhHHHHHhhHHHHHHHHHHhCCCeE
Q 000114 660 HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK---PLQRFQLMNDLCYEKVVAVAGKHQV 736 (2158)
Q Consensus 660 ~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~---~~~~~~~l~~~~~~~i~~~~~~~~v 736 (2158)
+.|+|+||||++ .+.+++++.. .+++...+...| +...+....... .......+...+.. +.. ...+.+
T Consensus 211 dLKlIlmSATld-~~~fa~~F~~---apvI~V~Gr~~P--Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~-l~~-~~~GdI 282 (1283)
T TIGR01967 211 DLKIIITSATID-PERFSRHFNN---APIIEVSGRTYP--VEVRYRPLVEEQEDDDLDQLEAILDAVDE-LFA-EGPGDI 282 (1283)
T ss_pred CCeEEEEeCCcC-HHHHHHHhcC---CCEEEECCCccc--ceeEEecccccccchhhhHHHHHHHHHHH-HHh-hCCCCE
Confidence 789999999985 5778888753 234444443334 444443322111 11122222222222 111 135799
Q ss_pred EEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHH
Q 000114 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816 (2158)
Q Consensus 737 LVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F 816 (2158)
|||+++++++..++..|...+.. ...|..+||+|+.++|..+++.+
T Consensus 283 LVFLpg~~EI~~l~~~L~~~~~~----------------------------------~~~VlpLhg~Ls~~eQ~~vf~~~ 328 (1283)
T TIGR01967 283 LIFLPGEREIRDAAEILRKRNLR----------------------------------HTEILPLYARLSNKEQQRVFQPH 328 (1283)
T ss_pred EEeCCCHHHHHHHHHHHHhcCCC----------------------------------CcEEEeccCCCCHHHHHHHhCCC
Confidence 99999999999999998764321 11256779999999999996654
Q ss_pred hCCCceEEEechhhhhccCCCceEEEEecc----cccCCCCCc----cccCCHHHHHHhhcccCCCCCCCccEEEEEcCC
Q 000114 817 GDGHVQVLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2158)
Q Consensus 817 ~~g~i~VLVaT~tla~GVdlP~v~vVI~~~----~~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2158)
+..+|||||+++++|||+|++++||+++ ..||+.+|. ..++|..+|.||+|||||.| .|.||.+++.
T Consensus 329 --~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte 403 (1283)
T TIGR01967 329 --SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSE 403 (1283)
T ss_pred --CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCH
Confidence 3479999999999999999999999975 457776652 25689999999999999986 7999999987
Q ss_pred CcHHHHHHhhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHH
Q 000114 889 SELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERR 968 (2158)
Q Consensus 889 ~~~~~y~~ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~ 968 (2158)
.+..... ....| | -+...|...+..-...| +.+ +..+. .+..+-
T Consensus 404 ~~~~~~~---~~~~P-E-IlR~~L~~viL~l~~lg-~~d--------------------i~~f~----------fldpP~ 447 (1283)
T TIGR01967 404 EDFNSRP---EFTDP-E-ILRTNLASVILQMLALR-LGD--------------------IAAFP----------FIEAPD 447 (1283)
T ss_pred HHHHhhh---hccCc-c-cccccHHHHHHHHHhcC-CCC--------------------ccccc----------CCCCCC
Confidence 6543322 11111 1 11112222222111111 111 11110 111112
Q ss_pred HHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhH
Q 000114 969 ADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDE 1048 (2158)
Q Consensus 969 ~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r~~e 1048 (2158)
.+.|..|+..|...|+|+.+. +...+|++|+.||.++++|...+++..+....|. .+++.|.|+-++ .++..|+.+
T Consensus 448 ~~~i~~A~~~L~~LGAld~~~--~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl-~e~l~IaA~Ls~-~dp~~~p~~ 523 (1283)
T TIGR01967 448 PRAIRDGFRLLEELGALDDDE--AEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCL-QEVLIIASALSI-QDPRERPME 523 (1283)
T ss_pred HHHHHHHHHHHHHCCCCCCCC--CCccccHHHHHHhhcCCChHHHHHHHHhhhcCCH-HHHHHHHHHHcC-CCcCCCcch
Confidence 356889999999999997442 3368999999999999999999999987766654 556666655443 455556555
Q ss_pred HHH
Q 000114 1049 KME 1051 (2158)
Q Consensus 1049 ~~~ 1051 (2158)
+.+
T Consensus 524 ~~~ 526 (1283)
T TIGR01967 524 KQQ 526 (1283)
T ss_pred hHH
Confidence 443
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.3e-32 Score=322.79 Aligned_cols=344 Identities=18% Similarity=0.229 Sum_probs=263.0
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
|-.+.+..+-. +|..++|+|..||+.++.+-| +||.|..|+|||++|-.+++..+... ...+.++|++|||+++-|
T Consensus 32 l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmD-liVQaKSGTGKTlVfsv~av~sl~~~--~~~~q~~Iv~PTREiaVQ 108 (980)
T KOG4284|consen 32 LWREVLLGLRRNAFALPTKIQAAAIPAIFSKMD-LIVQAKSGTGKTLVFSVLAVESLDSR--SSHIQKVIVTPTREIAVQ 108 (980)
T ss_pred HHHHHHHHHHhhcccCCCchhhhhhhhhhcccc-eEEEecCCCCceEEEEeeeehhcCcc--cCcceeEEEecchhhhhH
Confidence 33444555544 699999999999999998666 99999999999999999888877663 334589999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcch--hhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCCh
Q 000114 1406 RYRDWEIKFGQGLGMRVVELTGETAM--DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2158)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~ltG~~~~--~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~ 1483 (2158)
+...+.+.-....|.++..+.|++.. +...+.+++|+|+||+++..+... ...++.+++|+|+||||.|.+..
T Consensus 109 I~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el--~~~n~s~vrlfVLDEADkL~~t~--- 183 (980)
T KOG4284|consen 109 IKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVEL--GAMNMSHVRLFVLDEADKLMDTE--- 183 (980)
T ss_pred HHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHh--cCCCccceeEEEeccHHhhhchh---
Confidence 99999854334478999999998764 567888999999999999888765 45578999999999999887633
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEeccCCCC--hHHHHHHhccCCCceEecCCCC-cccccEEEEecccccchHHHHHhcC
Q 000114 1484 LEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGV-RPVPLEIHIQGVDITNFEARMQAMT 1560 (2158)
Q Consensus 1484 ~e~~isrl~~i~~~~~~~~riV~lSATl~n--~~dl~~wl~~~~~~i~~f~~~~-rpv~l~~~i~~~~~~~~~~~~~~~~ 1560 (2158)
.+-..+..|...++...|++++|||-+. ...++.++.... ++.|.... .-.-+..++.....++.........
T Consensus 184 --sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~--lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlk 259 (980)
T KOG4284|consen 184 --SFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPA--LVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLK 259 (980)
T ss_pred --hHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccc--eeecccCCceeechhheeeeccCCcchHHHHHHH
Confidence 2556666777778999999999999876 345666765543 22222211 1112223333333222222211111
Q ss_pred hHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEec
Q 000114 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2158)
Q Consensus 1561 k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H 1640 (2158)
-..+..+... -+-.++||||+....|+.+|..|.. -+..+.++.
T Consensus 260 lq~L~~vf~~-ipy~QAlVF~~~~sra~~~a~~L~s-----------------------------------sG~d~~~IS 303 (980)
T KOG4284|consen 260 LQKLTHVFKS-IPYVQALVFCDQISRAEPIATHLKS-----------------------------------SGLDVTFIS 303 (980)
T ss_pred HHHHHHHHhh-CchHHHHhhhhhhhhhhHHHHHhhc-----------------------------------cCCCeEEec
Confidence 2223333333 4566799999999999888866521 345588999
Q ss_pred CCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceE
Q 000114 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2158)
Q Consensus 1641 ~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~ 1720 (2158)
|.|++.+|..+++.++.-..+|||+|+..+||||-|.+.+|| |.+.|.+-..|+||+|||||-| ..|.
T Consensus 304 gaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVV----------NiD~p~d~eTY~HRIGRAgRFG--~~G~ 371 (980)
T KOG4284|consen 304 GAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVV----------NIDAPADEETYFHRIGRAGRFG--AHGA 371 (980)
T ss_pred cccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEE----------ecCCCcchHHHHHHhhhccccc--ccce
Confidence 999999999999999999999999999999999999999999 7888889999999999999976 8999
Q ss_pred EEEEecCChH
Q 000114 1721 CVILCHAPRK 1730 (2158)
Q Consensus 1721 ~iil~~~~~~ 1730 (2158)
++.+|...+.
T Consensus 372 aVT~~~~~~e 381 (980)
T KOG4284|consen 372 AVTLLEDERE 381 (980)
T ss_pred eEEEeccchh
Confidence 9999888754
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-30 Score=345.57 Aligned_cols=320 Identities=21% Similarity=0.327 Sum_probs=220.1
Q ss_pred CCCCCCHHHHHHHHHHhcC-----CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHH
Q 000114 1338 GFKHFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~-----~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~ 1412 (2158)
+| .||++|.+|++.++.. ..|.+++||||||||++|++|++..+.. +. +++|++||++||.|+++.+++
T Consensus 233 pf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~--qvlilaPT~~LA~Q~~~~~~~ 306 (630)
T TIGR00643 233 PF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GY--QVALMAPTEILAEQHYNSLRN 306 (630)
T ss_pred CC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CC--cEEEECCHHHHHHHHHHHHHH
Confidence 36 7999999999999864 1368999999999999999999988754 34 899999999999999999996
Q ss_pred HhcCCCCcEEEEEcCCcchhhh-----ccc--CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHH
Q 000114 1413 KFGQGLGMRVVELTGETAMDLK-----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (2158)
Q Consensus 1413 ~f~~~~g~~v~~ltG~~~~~~~-----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e 1485 (2158)
.++. .|+++..++|+.+...+ .+. +++|||+||+.+.. ...+++++++||||+|+++... .
T Consensus 307 l~~~-~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-------~~~~~~l~lvVIDEaH~fg~~q---r- 374 (630)
T TIGR00643 307 LLAP-LGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-------KVEFKRLALVIIDEQHRFGVEQ---R- 374 (630)
T ss_pred Hhcc-cCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-------cccccccceEEEechhhccHHH---H-
Confidence 6654 48999999998765421 222 45999999987532 2346889999999999875321 0
Q ss_pred HHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHh-ccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHH
Q 000114 1486 VIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWI-GATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTF 1564 (2158)
Q Consensus 1486 ~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl-~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~ 1564 (2158)
..+...... ....++++||||+.. +.++..+ +..........|..| .++...+.... . ....+
T Consensus 375 ---~~l~~~~~~-~~~~~~l~~SATp~p-rtl~l~~~~~l~~~~i~~~p~~r-~~i~~~~~~~~--~--------~~~~~ 438 (630)
T TIGR00643 375 ---KKLREKGQG-GFTPHVLVMSATPIP-RTLALTVYGDLDTSIIDELPPGR-KPITTVLIKHD--E--------KDIVY 438 (630)
T ss_pred ---HHHHHhccc-CCCCCEEEEeCCCCc-HHHHHHhcCCcceeeeccCCCCC-CceEEEEeCcc--h--------HHHHH
Confidence 111111100 126789999999644 2232221 211111222122222 23333322111 1 02345
Q ss_pred HHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHH-HhcccEEEecCCC
Q 000114 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKA-TLRHGVGYLHEGL 1643 (2158)
Q Consensus 1565 ~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~-~l~~gv~~~H~~l 1643 (2158)
..+...+..+++++|||++.+.++.+.. ....... ..+.+ ..+..|+.+||+|
T Consensus 439 ~~i~~~l~~g~q~~v~~~~i~~s~~~~~---------------------~~a~~~~-----~~L~~~~~~~~v~~lHG~m 492 (630)
T TIGR00643 439 EFIEEEIAKGRQAYVVYPLIEESEKLDL---------------------KAAEALY-----ERLKKAFPKYNVGLLHGRM 492 (630)
T ss_pred HHHHHHHHhCCcEEEEEccccccccchH---------------------HHHHHHH-----HHHHhhCCCCcEEEEeCCC
Confidence 5555565778999999998765432200 0000001 11222 2345799999999
Q ss_pred CHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEE
Q 000114 1644 NKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2158)
Q Consensus 1644 ~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~ii 1723 (2158)
+..+|..+++.|++|+++|||||+++++|||+|++++|| .|++. .++...|.||+|||||.| ..|.|++
T Consensus 493 ~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VI----i~~~~-----r~gls~lhQ~~GRvGR~g--~~g~~il 561 (630)
T TIGR00643 493 KSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMV----IEDAE-----RFGLSQLHQLRGRVGRGD--HQSYCLL 561 (630)
T ss_pred CHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEE----EeCCC-----cCCHHHHHHHhhhcccCC--CCcEEEE
Confidence 999999999999999999999999999999999999888 23322 136889999999999986 7899999
Q ss_pred EecCC
Q 000114 1724 LCHAP 1728 (2158)
Q Consensus 1724 l~~~~ 1728 (2158)
++..+
T Consensus 562 ~~~~~ 566 (630)
T TIGR00643 562 VYKNP 566 (630)
T ss_pred EECCC
Confidence 99543
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=323.89 Aligned_cols=341 Identities=25% Similarity=0.342 Sum_probs=251.5
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcC---CCceEEEEEcccHHHHHH
Q 000114 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE---TGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~---~~~~~~v~IaP~raLa~q 1405 (2158)
..++++-. +|..++|+|.+|++.+++. .+++.|||||||||++|.+|++.++..... ..+.+++|+.|+|+|+.|
T Consensus 146 ~ll~nl~~~~F~~Pt~iq~~aipvfl~~-r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Q 224 (593)
T KOG0344|consen 146 RLLENLQELGFDEPTPIQKQAIPVFLEK-RDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQ 224 (593)
T ss_pred HHHHhHhhCCCCCCCcccchhhhhhhcc-cceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHH
Confidence 33444433 7999999999999999884 459999999999999999999999987531 445799999999999999
Q ss_pred HHHHHHHHhc--CCCCcEEEEEcCCcchhhh----cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC
Q 000114 1406 RYRDWEIKFG--QGLGMRVVELTGETAMDLK----LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2158)
Q Consensus 1406 ~~~~~~~~f~--~~~g~~v~~ltG~~~~~~~----~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~ 1479 (2158)
++.++. ++. ...+.++..+........+ ....++|+|+||-++..++..-.....+.+|.++|+||+|++.+.
T Consensus 225 i~re~~-k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~ 303 (593)
T KOG0344|consen 225 IYREMR-KYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEP 303 (593)
T ss_pred HHHHHH-hcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhCh
Confidence 999998 566 4456666666655333321 233569999999998777765333347899999999999999866
Q ss_pred CCChHHHHHHHHHHHHhhc-CCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHH-
Q 000114 1480 GGPVLEVIVSRMRYIASQV-ENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ- 1557 (2158)
Q Consensus 1480 ~g~~~e~~isrl~~i~~~~-~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~- 1557 (2158)
+.++.++..|.+.. .+++++-+||||.+ ..+.+|.........+..-..++...+. ..+...
T Consensus 304 -----~~f~~Qla~I~sac~s~~i~~a~FSat~~--~~VEE~~~~i~~~~~~vivg~~~sa~~~---------V~QelvF 367 (593)
T KOG0344|consen 304 -----EFFVEQLADIYSACQSPDIRVALFSATIS--VYVEEWAELIKSDLKRVIVGLRNSANET---------VDQELVF 367 (593)
T ss_pred -----hhHHHHHHHHHHHhcCcchhhhhhhcccc--HHHHHHHHHhhccceeEEEecchhHhhh---------hhhhhee
Confidence 33555555544432 36788889999975 5578887665543333222222211100 001000
Q ss_pred -hcChHHHHHHHHhH--hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcc
Q 000114 1558 -AMTKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (2158)
Q Consensus 1558 -~~~k~~~~~i~~~~--~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (2158)
--.+..+.++.+.+ .-..|++||+-+.+.|..+...|- .+-+.
T Consensus 368 ~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~----------------------------------~~~~i 413 (593)
T KOG0344|consen 368 CGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELE----------------------------------IYDNI 413 (593)
T ss_pred eecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhh----------------------------------hccCc
Confidence 00112222333322 234679999999999988886651 11234
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCC
Q 000114 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2158)
Q Consensus 1635 gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g 1714 (2158)
.|.++||..++.+|..+++.|+.|++.|||||++++||+|+.++..|| |+++|-+..+|+||+||+||+|
T Consensus 414 ~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VI----------nyD~p~s~~syihrIGRtgRag 483 (593)
T KOG0344|consen 414 NVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVI----------NYDFPQSDLSYIHRIGRTGRAG 483 (593)
T ss_pred ceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEE----------ecCCCchhHHHHHHhhccCCCC
Confidence 589999999999999999999999999999999999999999999999 7889999999999999999997
Q ss_pred CCCceEEEEEecCChHHHHH
Q 000114 1715 LDNSGKCVILCHAPRKEYYK 1734 (2158)
Q Consensus 1715 ~d~~G~~iil~~~~~~~~~~ 1734 (2158)
..|.|+.|+.+.+..+.+
T Consensus 484 --~~g~Aitfytd~d~~~ir 501 (593)
T KOG0344|consen 484 --RSGKAITFYTDQDMPRIR 501 (593)
T ss_pred --CCcceEEEeccccchhhh
Confidence 899999999987655544
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.7e-30 Score=357.29 Aligned_cols=308 Identities=17% Similarity=0.246 Sum_probs=224.6
Q ss_pred CCCCCHHHHHHHHHHhcC-----CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHH
Q 000114 1339 FKHFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIK 1413 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~-----~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~ 1413 (2158)
| .+|++|.+|++.++.+ ..+++++||||||||.+|+.+++..+.. +. +++|++||++||.|+++.|++.
T Consensus 599 ~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~--qvlvLvPT~eLA~Q~~~~f~~~ 672 (1147)
T PRK10689 599 F-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HK--QVAVLVPTTLLAQQHYDNFRDR 672 (1147)
T ss_pred C-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CC--eEEEEeCcHHHHHHHHHHHHHh
Confidence 5 7999999999999874 2579999999999999999888776543 34 8999999999999999999987
Q ss_pred hcCCCCcEEEEEcCCcchhhh-----cc--cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHH
Q 000114 1414 FGQGLGMRVVELTGETAMDLK-----LL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEV 1486 (2158)
Q Consensus 1414 f~~~~g~~v~~ltG~~~~~~~-----~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~ 1486 (2158)
|+.. ++++..++|..+...+ .+ ...+|||+||+.+ +. ...+++++++||||+|+++..
T Consensus 673 ~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~---~v~~~~L~lLVIDEahrfG~~------- 737 (1147)
T PRK10689 673 FANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QS---DVKWKDLGLLIVDEEHRFGVR------- 737 (1147)
T ss_pred hccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hC---CCCHhhCCEEEEechhhcchh-------
Confidence 7654 7888888887665322 12 2469999999742 21 234678999999999998421
Q ss_pred HHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHH
Q 000114 1487 IVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFT 1565 (2158)
Q Consensus 1487 ~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~ 1565 (2158)
...++ ..++.+++++++|||+.+ ...++.. +.....++...|..| .++...+..+.. .....
T Consensus 738 ~~e~l----k~l~~~~qvLl~SATpiprtl~l~~~-gl~d~~~I~~~p~~r-~~v~~~~~~~~~-----------~~~k~ 800 (1147)
T PRK10689 738 HKERI----KAMRADVDILTLTATPIPRTLNMAMS-GMRDLSIIATPPARR-LAVKTFVREYDS-----------LVVRE 800 (1147)
T ss_pred HHHHH----HhcCCCCcEEEEcCCCCHHHHHHHHh-hCCCcEEEecCCCCC-CCceEEEEecCc-----------HHHHH
Confidence 12222 234568999999999744 3333222 222223344334333 233333322210 11223
Q ss_pred HHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCH
Q 000114 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (2158)
Q Consensus 1566 ~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~ 1645 (2158)
.+...+..+++++||||+++.++.++..|... ....+|..+||+|++
T Consensus 801 ~il~el~r~gqv~vf~n~i~~ie~la~~L~~~---------------------------------~p~~~v~~lHG~m~q 847 (1147)
T PRK10689 801 AILREILRGGQVYYLYNDVENIQKAAERLAEL---------------------------------VPEARIAIGHGQMRE 847 (1147)
T ss_pred HHHHHHhcCCeEEEEECCHHHHHHHHHHHHHh---------------------------------CCCCcEEEEeCCCCH
Confidence 44444567889999999999998888666321 113568999999999
Q ss_pred HHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEe
Q 000114 1646 TDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2158)
Q Consensus 1646 ~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~ 1725 (2158)
.+|..++..|++|+++|||||+++++|+|+|++.+||.. ++ ..+.+.+|+||+||+||.| ..|.|++++
T Consensus 848 ~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~----~a-----d~fglaq~~Qr~GRvGR~g--~~g~a~ll~ 916 (1147)
T PRK10689 848 RELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE----RA-----DHFGLAQLHQLRGRVGRSH--HQAYAWLLT 916 (1147)
T ss_pred HHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEe----cC-----CCCCHHHHHHHhhccCCCC--CceEEEEEe
Confidence 999999999999999999999999999999998888731 11 1246788999999999986 789999998
Q ss_pred cCC
Q 000114 1726 HAP 1728 (2158)
Q Consensus 1726 ~~~ 1728 (2158)
..+
T Consensus 917 ~~~ 919 (1147)
T PRK10689 917 PHP 919 (1147)
T ss_pred CCC
Confidence 765
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.1e-31 Score=329.39 Aligned_cols=327 Identities=21% Similarity=0.325 Sum_probs=247.5
Q ss_pred hHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH
Q 000114 486 AQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (2158)
Q Consensus 486 ~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q 565 (2158)
++..| |+..|++-|.++|..++.++ ++++..|||+||++||.+|.+-. . | -+|+|+|..+|...
T Consensus 9 L~~~f-Gy~~FR~gQ~evI~~~l~g~-d~lvvmPTGgGKSlCyQiPAll~--~-----G-------~TLVVSPLiSLM~D 72 (590)
T COG0514 9 LKQVF-GYASFRPGQQEIIDALLSGK-DTLVVMPTGGGKSLCYQIPALLL--E-----G-------LTLVVSPLISLMKD 72 (590)
T ss_pred HHHHh-CccccCCCHHHHHHHHHcCC-cEEEEccCCCCcchHhhhHHHhc--C-----C-------CEEEECchHHHHHH
Confidence 34444 79999999999999999884 59999999999999999998754 1 2 58999999999999
Q ss_pred HHHHHHhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHH--HHHHhccCCCccccccceEEeecccccc
Q 000114 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 566 ~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekl--d~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
+++.+... |+.+..+.+..+..... ....++++-+||++ ..+.+.. .-..+.+++|||||++.
T Consensus 73 QV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L----~~~~i~l~vIDEAHCiS 144 (590)
T COG0514 73 QVDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELL----KRLPISLVAIDEAHCIS 144 (590)
T ss_pred HHHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHH----HhCCCceEEechHHHHh
Confidence 99998875 78888888775544332 23578999999997 2222221 13458899999999996
Q ss_pred c---CChhhHHHHHHHHHHHHhhccccccEEEEccccCC--hHHHHHHHhccccCceEEecCCcccccceeEEEeeccCC
Q 000114 637 D---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKK 711 (2158)
Q Consensus 637 d---~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn--~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~ 711 (2158)
. ++.|.+..+..-. .. -+++++++||||-+. ..|+..-|+.. ....+..+-.||. +...+. ...+
T Consensus 145 qWGhdFRP~Y~~lg~l~----~~-~~~~p~~AlTATA~~~v~~DI~~~L~l~--~~~~~~~sfdRpN-i~~~v~--~~~~ 214 (590)
T COG0514 145 QWGHDFRPDYRRLGRLR----AG-LPNPPVLALTATATPRVRDDIREQLGLQ--DANIFRGSFDRPN-LALKVV--EKGE 214 (590)
T ss_pred hcCCccCHhHHHHHHHH----hh-CCCCCEEEEeCCCChHHHHHHHHHhcCC--CcceEEecCCCch-hhhhhh--hccc
Confidence 5 4777776553322 22 348999999999764 45666667654 2233334444552 211111 1111
Q ss_pred hhHHHHHhhHHHHHHHHH--HhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchh
Q 000114 712 PLQRFQLMNDLCYEKVVA--VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (2158)
Q Consensus 712 ~~~~~~~l~~~~~~~i~~--~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 789 (2158)
...++. .+.+ ....++.||||.||+.++.+|..|...+.
T Consensus 215 ~~~q~~--------fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~------------------------------- 255 (590)
T COG0514 215 PSDQLA--------FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGI------------------------------- 255 (590)
T ss_pred HHHHHH--------HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCC-------------------------------
Confidence 111111 1221 23356789999999999999999987643
Q ss_pred hhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhc
Q 000114 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (2158)
Q Consensus 790 ~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~G 869 (2158)
.++.+||||+.++|..+++.|..+.++|+|||.++++|||-|+++.||| |+.|. |+.+|.|-+|
T Consensus 256 ------~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH----~~lP~------s~EsYyQE~G 319 (590)
T COG0514 256 ------SAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH----YDLPG------SIESYYQETG 319 (590)
T ss_pred ------ceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEE----ecCCC------CHHHHHHHHh
Confidence 3577899999999999999999999999999999999999999999999 78776 8899999999
Q ss_pred ccCCCCCCCccEEEEEcCCCcHHHHHHhhcCCCc
Q 000114 870 RAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (2158)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~p 903 (2158)
||||.| ....|+++++..+......++....|
T Consensus 320 RAGRDG--~~a~aill~~~~D~~~~~~~i~~~~~ 351 (590)
T COG0514 320 RAGRDG--LPAEAILLYSPEDIRWQRYLIEQSKP 351 (590)
T ss_pred hccCCC--CcceEEEeeccccHHHHHHHHHhhcc
Confidence 999998 67999999999998877777777666
|
|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-31 Score=339.50 Aligned_cols=375 Identities=22% Similarity=0.306 Sum_probs=269.1
Q ss_pred ccccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc---CCCceEEEEEccc
Q 000114 1324 VTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPL 1399 (2158)
Q Consensus 1324 ~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~---~~~~~~~v~IaP~ 1399 (2158)
...+....+..+-+ ||..++|||.||+|+++.+++ ||.+|.||||||++|.||+++|..... .+.+|.+++++||
T Consensus 369 q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrd-vIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPt 447 (997)
T KOG0334|consen 369 QCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRD-VIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPT 447 (997)
T ss_pred hCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcc-eEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCC
Confidence 34455556666644 688999999999999999777 999999999999999999999987642 2346799999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhh--h-cccCCcEEEeCHHHHHHHHhhhhccc-cccceeEEEeccccc
Q 000114 1400 EALAKERYRDWEIKFGQGLGMRVVELTGETAMDL--K-LLEKGQIIISTPEKWDALSRRWKQRK-YVQQVSLFIIDELHL 1475 (2158)
Q Consensus 1400 raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~--~-~l~~~~IIV~TPe~l~~l~r~~~~~~-~l~~v~llIiDEaH~ 1475 (2158)
|+|+.|+.+.++ +|.+.+|++++...|+..... . .-+.+.|+||||+++.+++-....+. ++.++..+|+||||.
T Consensus 448 rela~QI~r~~~-kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDr 526 (997)
T KOG0334|consen 448 RELAMQIHREVR-KFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADR 526 (997)
T ss_pred HHHHHHHHHHHH-HHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhh
Confidence 999999999988 787779999999999876542 2 22346999999999987765543332 567777999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HHHHHHhccCCCceEecCCCC--cccccEEEEecccccch
Q 000114 1476 IGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGV--RPVPLEIHIQGVDITNF 1552 (2158)
Q Consensus 1476 l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~dl~~wl~~~~~~i~~f~~~~--rpv~l~~~i~~~~~~~~ 1552 (2158)
+.+.+ ++.-+.+ |...+++..|.|++|||++.. +.++.-+-..+..+..-..+. ..+...+.+.......+
T Consensus 527 mfdmg---fePq~~~---Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf 600 (997)
T KOG0334|consen 527 MFDMG---FEPQITR---ILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKF 600 (997)
T ss_pred hheec---cCcccch---HHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHH
Confidence 98654 2222222 344456789999999999874 445544433332221111100 11222222222111111
Q ss_pred HHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHh
Q 000114 1553 EARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL 1632 (2158)
Q Consensus 1553 ~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l 1632 (2158)
.. ...++.......++||||.+...|..+..+|.. .
T Consensus 601 ~k---------L~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~-----------------------------------a 636 (997)
T KOG0334|consen 601 LK---------LLELLGERYEDGKTIIFVDKQEKADALLRDLQK-----------------------------------A 636 (997)
T ss_pred HH---------HHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHh-----------------------------------c
Confidence 11 122222225689999999999999999887742 2
Q ss_pred cccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCC
Q 000114 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2158)
Q Consensus 1633 ~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR 1712 (2158)
++.+..+|||.++.+|..+++.|++|.+.+||||+++++|+|++...+|| |+++|--..+|+||+||+||
T Consensus 637 g~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvv----------nyd~pnh~edyvhR~gRTgr 706 (997)
T KOG0334|consen 637 GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVV----------NYDFPNHYEDYVHRVGRTGR 706 (997)
T ss_pred CcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEE----------EcccchhHHHHHHHhccccc
Confidence 33455699999999999999999999999999999999999999999998 66677678899999999999
Q ss_pred CCCCCceEEEEEecCChHHH---HHHHhhCCCccccchhhHHHHHHHHHHhcC
Q 000114 1713 PLLDNSGKCVILCHAPRKEY---YKKFLYDAFPVESHLHHFLHDNFNAEIVAG 1762 (2158)
Q Consensus 1713 ~g~d~~G~~iil~~~~~~~~---~~k~l~~~~piES~L~~~l~d~l~aeI~~~ 1762 (2158)
.| ..|.|+.|..+.+..+ +-+++....-.-+++...+..-+.++...+
T Consensus 707 ag--rkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~~f~~~~~~~ 757 (997)
T KOG0334|consen 707 AG--RKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQALSERFKAKQKAG 757 (997)
T ss_pred CC--ccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHHHHHHHHHhhhhcc
Confidence 98 7889999988844332 222222111112266667777777776655
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=349.93 Aligned_cols=348 Identities=21% Similarity=0.254 Sum_probs=264.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.|+..|+++|.+|+..+.++ +|++|++|||||||.+|++||+..+.+... .++|||.||+|||+.|.++|
T Consensus 66 ~g~~~lY~HQ~~A~~~~~~G-~~vvVtTgTgSGKTe~FllPIld~~l~~~~---------a~AL~lYPtnALa~DQ~~rl 135 (851)
T COG1205 66 AGIERLYSHQVDALRLIREG-RNVVVTTGTGSGKTESFLLPILDHLLRDPS---------ARALLLYPTNALANDQAERL 135 (851)
T ss_pred hccccccHHHHHHHHHHHCC-CCEEEECCCCCchhHHHHHHHHHHHhhCcC---------ccEEEEechhhhHhhHHHHH
Confidence 57788999999999998777 679999999999999999999999987643 28999999999999999999
Q ss_pred HhhcccCC--cEEEEEeCCCccCHhh---hccccEEEcchhHHHH-HHhcc-CCCccccccceEEeecccccccCChhhH
Q 000114 571 SNRLQMYD--VKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDI-ITRKS-GDRTYTQLVKLLIIDEIHLLHDNRGPVL 643 (2158)
Q Consensus 571 ~~~~~~~g--i~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~-l~r~~-~~~~~l~~v~lIIiDEaH~l~d~rg~~l 643 (2158)
+++....+ +.+..++||+...+.. .+.++|++|||++|+. ++|.. .....+.++++||+||+|.+-.-+|..+
T Consensus 136 ~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~v 215 (851)
T COG1205 136 RELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEV 215 (851)
T ss_pred HHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHH
Confidence 99988776 8899999999888773 6789999999999976 45544 3345667899999999999988899999
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHH---HHhh
Q 000114 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRF---QLMN 720 (2158)
Q Consensus 644 e~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~---~~l~ 720 (2158)
..++.|+++..+..+.+.++|+.|||+.|..+.+.-+....- ...++.+..|-.....+............ ....
T Consensus 216 A~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f--~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~ 293 (851)
T COG1205 216 ALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDF--EVPVDEDGSPRGLRYFVRREPPIRELAESIRRSALA 293 (851)
T ss_pred HHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcc--eeeccCCCCCCCceEEEEeCCcchhhhhhcccchHH
Confidence 999999999999888999999999999998776655543211 11134444444443333322211000000 0111
Q ss_pred HHHHHHHHH--HhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeE
Q 000114 721 DLCYEKVVA--VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798 (2158)
Q Consensus 721 ~~~~~~i~~--~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~ 798 (2158)
. ...+.. ...+-++|+|+.+|+.++.++...+....... . .+..-+.
T Consensus 294 ~--~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~----------------------------~l~~~v~ 342 (851)
T COG1205 294 E--LATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREG-G----------------------------KLLDAVS 342 (851)
T ss_pred H--HHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcc-h----------------------------hhhhhee
Confidence 1 011111 12367999999999999988755544322111 0 0123478
Q ss_pred EecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCC
Q 000114 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDS 878 (2158)
Q Consensus 799 ~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~ 878 (2158)
.|||||...+|..++..|+.|++.++++|++|+-|||+-++..||....|.. |..+++||+|||||.+ .
T Consensus 343 ~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~---------s~~~~~Q~~GRaGR~~--~ 411 (851)
T COG1205 343 TYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGV---------SVLSFRQRAGRAGRRG--Q 411 (851)
T ss_pred eccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCc---------hHHHHHHhhhhccCCC--C
Confidence 8999999999999999999999999999999999999999999998444432 6789999999999987 5
Q ss_pred ccEEEEEcCCCcHH
Q 000114 879 YGEGIIITGHSELR 892 (2158)
Q Consensus 879 ~G~~iil~~~~~~~ 892 (2158)
.+..+++...+-.+
T Consensus 412 ~~l~~~v~~~~~~d 425 (851)
T COG1205 412 ESLVLVVLRSDPLD 425 (851)
T ss_pred CceEEEEeCCCccc
Confidence 56666666654433
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.9e-30 Score=334.15 Aligned_cols=327 Identities=18% Similarity=0.186 Sum_probs=217.4
Q ss_pred HHHHHHHHHHHcCCCcEEEEccCCCchHHHHH---------HHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000114 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAV---------LTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (2158)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~---------l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~ 568 (2158)
.+|.++++.+++++ ++|++|+||||||.+.. ++.+..+..-.. .....++++++||++||.|+..
T Consensus 167 ~iQ~qil~~i~~gk-dvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~-----~~~~~~ilvt~PrreLa~qi~~ 240 (675)
T PHA02653 167 DVQLKIFEAWISRK-PVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDP-----NFIERPIVLSLPRVALVRLHSI 240 (675)
T ss_pred HHHHHHHHHHHhCC-CEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhccc-----ccCCcEEEEECcHHHHHHHHHH
Confidence 48999999987765 59999999999998732 333333321100 1124589999999999999999
Q ss_pred HHHhhccc---CCcEEEEEeCCCccC--HhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhH
Q 000114 569 NLSNRLQM---YDVKVRELSGDQTLT--RQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVL 643 (2158)
Q Consensus 569 ~~~~~~~~---~gi~v~~l~Gd~~~~--~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~l 643 (2158)
++.+.++. .|.++...+|+.... .......+|+|+|+.. ....++++++|||||||.+... +..+
T Consensus 241 ~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L---------~l~~L~~v~~VVIDEaHEr~~~-~Dll 310 (675)
T PHA02653 241 TLLKSLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL---------TLNKLFDYGTVIIDEVHEHDQI-GDII 310 (675)
T ss_pred HHHHHhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc---------cccccccCCEEEccccccCccc-hhHH
Confidence 99876654 367788899987632 1122357899999762 1134778999999999987542 3344
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccC-ChHHHHHHHhccccCceEEecCCcccccceeEEEeeccC--ChhHHHHHhh
Q 000114 644 ESIVARTVRQIETTKEHIRLVGLSATLP-NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK--KPLQRFQLMN 720 (2158)
Q Consensus 644 e~iv~r~~~~~~~~~~~~riv~lSATlp-n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~--~~~~~~~~l~ 720 (2158)
..++.... ....|+++||||++ +.+.+..|++. ...+..... ...|+++.++..... ........-.
T Consensus 311 L~llk~~~------~~~rq~ILmSATl~~dv~~l~~~~~~---p~~I~I~gr-t~~pV~~~yi~~~~~~~~~~~y~~~~k 380 (675)
T PHA02653 311 IAVARKHI------DKIRSLFLMTATLEDDRDRIKEFFPN---PAFVHIPGG-TLFPISEVYVKNKYNPKNKRAYIEEEK 380 (675)
T ss_pred HHHHHHhh------hhcCEEEEEccCCcHhHHHHHHHhcC---CcEEEeCCC-cCCCeEEEEeecCcccccchhhhHHHH
Confidence 33333221 12248999999998 34556666642 222332221 124555554432211 0000000001
Q ss_pred HHHHHHHHHHh--CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeE
Q 000114 721 DLCYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798 (2158)
Q Consensus 721 ~~~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~ 798 (2158)
..+...+.... .++++||||++++++..+++.|..... ...+.
T Consensus 381 ~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~-----------------------------------~~~v~ 425 (675)
T PHA02653 381 KNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLP-----------------------------------IYDFY 425 (675)
T ss_pred HHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcC-----------------------------------CceEE
Confidence 11122222221 256899999999999999998876420 12356
Q ss_pred EecCCCCHHHHHHHHHHH-hCCCceEEEechhhhhccCCCceEEEEecccccCCC--CCccccCCHHHHHHhhcccCCCC
Q 000114 799 IHHAGMTRGDRQLVEDLF-GDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE--KGAWTELSPLDIMQMLGRAGRPQ 875 (2158)
Q Consensus 799 ~hHagl~~~~R~~v~~~F-~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~--~g~~~~~s~~~~~Qr~GRAGR~g 875 (2158)
.+||+|++. +.+++.| ++|+.+|||||+++++|||+|++++||+++..+.|. .|...++|.++|.||+|||||.
T Consensus 426 ~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~- 502 (675)
T PHA02653 426 IIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV- 502 (675)
T ss_pred eccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-
Confidence 679999975 4555666 789999999999999999999999999987544442 3444568999999999999997
Q ss_pred CCCccEEEEEcCCCc
Q 000114 876 YDSYGEGIIITGHSE 890 (2158)
Q Consensus 876 ~d~~G~~iil~~~~~ 890 (2158)
..|.|+.+++..+
T Consensus 503 --~~G~c~rLyt~~~ 515 (675)
T PHA02653 503 --SPGTYVYFYDLDL 515 (675)
T ss_pred --CCCeEEEEECHHH
Confidence 4699999998765
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=335.09 Aligned_cols=321 Identities=17% Similarity=0.157 Sum_probs=211.3
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.||+ |+|||.++++.++.+.++++++||||||||.++.++++.. .... ....++||++|||+||.|+++.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~~-------~~~~rLv~~vPtReLa~Qi~~~~ 82 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIGA-------KVPRRLVYVVNRRTVVDQVTEEA 82 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cccc-------cccceEEEeCchHHHHHHHHHHH
Confidence 4887 9999999999999988779999999999999765444422 1110 11236677889999999999999
Q ss_pred HhhcccC-----------------------CcEEEEEeCCCccCHhhh---ccccEEEcchhHHHHHHhccC--------
Q 000114 571 SNRLQMY-----------------------DVKVRELSGDQTLTRQQI---EETQIIVTTPEKWDIITRKSG-------- 616 (2158)
Q Consensus 571 ~~~~~~~-----------------------gi~v~~l~Gd~~~~~~~~---~~~~IiV~TPekld~l~r~~~-------- 616 (2158)
.++.+.+ ++++..++|+.....+.. ..++|||+|++ .+.++..
T Consensus 83 ~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D---~i~sr~L~~gYg~~~ 159 (844)
T TIGR02621 83 EKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVD---MIGSRLLFSGYGCGF 159 (844)
T ss_pred HHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHH---HHcCCcccccccccc
Confidence 9877644 488999999988766542 46799999965 4443331
Q ss_pred -----CCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhccccCceEE
Q 000114 617 -----DRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFY 690 (2158)
Q Consensus 617 -----~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn-~~dv~~~l~~~~~~~~~~ 690 (2158)
....++++++||+|||| +...+...++.|+..+.+ .....+.|+++||||+|. ..+....+...+. .+.
T Consensus 160 ~~~pi~ag~L~~v~~LVLDEAD-Ld~gF~~~l~~Il~~l~r--p~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~--~i~ 234 (844)
T TIGR02621 160 KSRPLHAGFLGQDALIVHDEAH-LEPAFQELLKQIMNEQQR--PPDFLPLRVVELTATSRTDGPDRTTLLSAEDY--KHP 234 (844)
T ss_pred ccccchhhhhccceEEEEehhh-hccccHHHHHHHHHhccc--CcccccceEEEEecCCCccHHHHHHHHccCCc--eee
Confidence 11136889999999999 433566666666554310 011123689999999984 2223323322211 111
Q ss_pred ecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccC
Q 000114 691 FDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKED 770 (2158)
Q Consensus 691 f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~ 770 (2158)
.........-..+++.. .. ..++..+...+.... ...++++||||||++.|..+++.|...+
T Consensus 235 V~~~~l~a~ki~q~v~v--~~-e~Kl~~lv~~L~~ll--~e~g~~vLVF~NTv~~Aq~L~~~L~~~g------------- 296 (844)
T TIGR02621 235 VLKKRLAAKKIVKLVPP--SD-EKFLSTMVKELNLLM--KDSGGAILVFCRTVKHVRKVFAKLPKEK------------- 296 (844)
T ss_pred cccccccccceEEEEec--Ch-HHHHHHHHHHHHHHH--hhCCCcEEEEECCHHHHHHHHHHHHhcC-------------
Confidence 11111111111122211 11 112211111111111 1236789999999999999999987532
Q ss_pred chhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHH-----HHHHHHhC----CC-------ceEEEechhhhhcc
Q 000114 771 SVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ-----LVEDLFGD----GH-------VQVLVSTATLAWGV 834 (2158)
Q Consensus 771 ~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~-----~v~~~F~~----g~-------i~VLVaT~tla~GV 834 (2158)
+..+||+|++.+|. .+++.|++ |. .+|||||+++++||
T Consensus 297 --------------------------~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGL 350 (844)
T TIGR02621 297 --------------------------FELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGV 350 (844)
T ss_pred --------------------------CeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcc
Confidence 24569999999999 88999987 44 78999999999999
Q ss_pred CCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEE
Q 000114 835 NLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2158)
Q Consensus 835 dlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2158)
|++. ++||+ +.. +..+|+||+||+||.|....+.++++
T Consensus 351 DId~-d~VI~----d~a--------P~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 351 NISA-DHLVC----DLA--------PFESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred cCCc-ceEEE----CCC--------CHHHHHHHhcccCCCCCCCCceEEEE
Confidence 9998 66665 222 35689999999999885433434444
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=302.72 Aligned_cols=339 Identities=23% Similarity=0.352 Sum_probs=235.3
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
++.-+++.+|..++..++.+ |.||+.|||-|||.+|++.|...+... ++ |+|+++|||.|+.|.++.|
T Consensus 11 p~~ie~R~YQ~~i~a~al~~--NtLvvlPTGLGKT~IA~~V~~~~l~~~---------~~-kvlfLAPTKPLV~Qh~~~~ 78 (542)
T COG1111 11 PNTIEPRLYQLNIAAKALFK--NTLVVLPTGLGKTFIAAMVIANRLRWF---------GG-KVLFLAPTKPLVLQHAEFC 78 (542)
T ss_pred cccccHHHHHHHHHHHHhhc--CeEEEecCCccHHHHHHHHHHHHHHhc---------CC-eEEEecCCchHHHHHHHHH
Confidence 34557899999999998876 899999999999999999999988765 23 8999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHh--hhccccEEEcchhHH--HHHHhccCCCccccccceEEeecccccccCChhhHHHH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESI 646 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPekl--d~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~i 646 (2158)
.+.++-..-.++.+||..+.+++ .+...+|+|+||+.+ |.+.. +..+.++.++||||||+-..+ .....
T Consensus 79 ~~v~~ip~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~G----rid~~dv~~lifDEAHRAvGn---yAYv~ 151 (542)
T COG1111 79 RKVTGIPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAG----RIDLDDVSLLIFDEAHRAVGN---YAYVF 151 (542)
T ss_pred HHHhCCChhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcC----ccChHHceEEEechhhhccCc---chHHH
Confidence 99876555578999999988754 367899999999987 33332 256788999999999986433 23333
Q ss_pred HHHHHHHHhhccccccEEEEccccCC-hHHHH---HHHhccccCceEEec---CCcccc--cceeEEEeeccC-------
Q 000114 647 VARTVRQIETTKEHIRLVGLSATLPN-YEDVA---LFLRVNLEKGLFYFD---NSYRPV--PLSQQYIGIQVK------- 710 (2158)
Q Consensus 647 v~r~~~~~~~~~~~~riv~lSATlpn-~~dv~---~~l~~~~~~~~~~f~---~~~rpv--~l~~~~~~~~~~------- 710 (2158)
+++.. -....+++++|||||..+ .+.+. +-|+.. .+.+.. .+.+|. .....++.+...
T Consensus 152 Va~~y---~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe---~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir 225 (542)
T COG1111 152 VAKEY---LRSAKNPLILGLTASPGSDLEKIQEVVENLGIE---KVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIR 225 (542)
T ss_pred HHHHH---HHhccCceEEEEecCCCCCHHHHHHHHHhCCcc---eEEEecCCCccHHHhhccceeEEEeccCcHHHHHHH
Confidence 33321 124668899999999764 22222 222221 111110 011110 000000000000
Q ss_pred -----------------------C---------------------hhHHHHHhh------------H-------------
Q 000114 711 -----------------------K---------------------PLQRFQLMN------------D------------- 721 (2158)
Q Consensus 711 -----------------------~---------------------~~~~~~~l~------------~------------- 721 (2158)
. ....+..|. +
T Consensus 226 ~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Y 305 (542)
T COG1111 226 DLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQY 305 (542)
T ss_pred HHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH
Confidence 0 000000000 0
Q ss_pred ----------------------------------------------HHHHHHHHHh---CCCeEEEEecChHHHHHHHHH
Q 000114 722 ----------------------------------------------LCYEKVVAVA---GKHQVLIFVHSRKETAKTARA 752 (2158)
Q Consensus 722 ----------------------------------------------~~~~~i~~~~---~~~~vLVFv~sr~~~~~~a~~ 752 (2158)
.+.+.+.+.. ++.++|||++-|..++.++..
T Consensus 306 l~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~ 385 (542)
T COG1111 306 LEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNF 385 (542)
T ss_pred HHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHH
Confidence 0011112222 245899999999999999999
Q ss_pred HHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhh
Q 000114 753 IRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAW 832 (2158)
Q Consensus 753 L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~ 832 (2158)
|...+.... ..|+.. +-.-+..||++.++..+++.|++|..+|||||++.+.
T Consensus 386 L~~~~~~~~--~rFiGQ--------------------------a~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEE 437 (542)
T COG1111 386 LKKIGIKAR--VRFIGQ--------------------------ASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEE 437 (542)
T ss_pred HHhcCCcce--eEEeec--------------------------cccccccccCHHHHHHHHHHHhcCCceEEEEcccccc
Confidence 998776543 233321 1122358999999999999999999999999999999
Q ss_pred ccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCC--cHHHHH
Q 000114 833 GVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS--ELRYYL 895 (2158)
Q Consensus 833 GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~--~~~~y~ 895 (2158)
|+|+|.+++||. |+|-. |..-++||.||+||. +.|.++++.+.+ +..||.
T Consensus 438 GLDIp~vDlVif----YEpvp------SeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~ 489 (542)
T COG1111 438 GLDIPEVDLVIF----YEPVP------SEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYY 489 (542)
T ss_pred cCCCCcccEEEE----ecCCc------HHHHHHHhhCccccC---CCCeEEEEEecCchHHHHHH
Confidence 999999999998 88765 888999999999994 679999998887 444554
|
|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=306.88 Aligned_cols=336 Identities=19% Similarity=0.269 Sum_probs=261.1
Q ss_pred Hhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH
Q 000114 487 QPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (2158)
Q Consensus 487 ~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q 565 (2158)
+.++ .||+.|+|||++.+|.++.+.+ ++..|-||||||.||++|+++.+..+. ..+.++++++|+++|+.|
T Consensus 34 raI~kkg~~~ptpiqRKTipliLe~~d-vv~martgsgktaaf~ipm~e~Lk~~s-------~~g~RalilsptreLa~q 105 (529)
T KOG0337|consen 34 RAIHKKGFNTPTPIQRKTIPLILEGRD-VVGMARTGSGKTAAFLIPMIEKLKSHS-------QTGLRALILSPTRELALQ 105 (529)
T ss_pred HHHHHhhcCCCCchhcccccceeeccc-cceeeecCCcchhhHHHHHHHHHhhcc-------ccccceeeccCcHHHHHH
Confidence 3444 7999999999999999999877 999999999999999999999998764 246799999999999999
Q ss_pred HHHHHHhhcccCCcEEEEEeCCCccCHhhh---ccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CChh
Q 000114 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQI---EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGP 641 (2158)
Q Consensus 566 ~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~---~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~ 641 (2158)
..+.++...+..++++..++|+.+..++.. .+++||++||+++-.+.-... ..++.|.+||+||++.|.. ++.+
T Consensus 106 tlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~--l~l~sveyVVfdEadrlfemgfqe 183 (529)
T KOG0337|consen 106 TLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMT--LTLSSVEYVVFDEADRLFEMGFQE 183 (529)
T ss_pred HHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhee--ccccceeeeeehhhhHHHhhhhHH
Confidence 999999988888999998888877776642 479999999998643333322 4577899999999999987 5878
Q ss_pred hHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEe-cCCccc-ccceeEEEeeccCChhHHHHHh
Q 000114 642 VLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYF-DNSYRP-VPLSQQYIGIQVKKPLQRFQLM 719 (2158)
Q Consensus 642 ~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f-~~~~rp-v~l~~~~~~~~~~~~~~~~~~l 719 (2158)
.+..+++|+ +...|.+++|||+| .++..|.+.....+..+. +-.-+- ..++..+..+ .+..+ ...
T Consensus 184 ql~e~l~rl-------~~~~QTllfSatlp--~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~--~~a~K-~aa- 250 (529)
T KOG0337|consen 184 QLHEILSRL-------PESRQTLLFSATLP--RDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRV--RKAEK-EAA- 250 (529)
T ss_pred HHHHHHHhC-------CCcceEEEEeccCc--hhhHHHHHccCCCCceEEeehhhhcchhhhhheeee--ccHHH-HHH-
Confidence 888888876 55669999999999 577778776654443332 111111 1112222222 11111 111
Q ss_pred hHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEE
Q 000114 720 NDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAI 799 (2158)
Q Consensus 720 ~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~ 799 (2158)
+...+....+..+++|||.|+..++.+...|...+... ..
T Consensus 251 ---Ll~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~-------------------------------------s~ 290 (529)
T KOG0337|consen 251 ---LLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEG-------------------------------------SD 290 (529)
T ss_pred ---HHHHHhccccccceeEEecccchHHHHHHHHHhcCCCc-------------------------------------cc
Confidence 11222233335689999999999999988888766443 34
Q ss_pred ecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCc
Q 000114 800 HHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY 879 (2158)
Q Consensus 800 hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~ 879 (2158)
.++.|.+..|..-...|+.++..+||.|++++||+|+|-...||+++.|-++. -|+||+||+.|+| ..
T Consensus 291 iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~k----------lFvhRVgr~arag--rt 358 (529)
T KOG0337|consen 291 IYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDK----------LFVHRVGRVARAG--RT 358 (529)
T ss_pred cccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCc----------eEEEEecchhhcc--cc
Confidence 48999999999999999999999999999999999999999999966666655 4999999999988 78
Q ss_pred cEEEEEcCCCcHHHHHHh
Q 000114 880 GEGIIITGHSELRYYLSL 897 (2158)
Q Consensus 880 G~~iil~~~~~~~~y~~l 897 (2158)
|.+|-++...+..|+..+
T Consensus 359 g~aYs~V~~~~~~yl~DL 376 (529)
T KOG0337|consen 359 GRAYSLVASTDDPYLLDL 376 (529)
T ss_pred ceEEEEEecccchhhhhh
Confidence 999999999888777654
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-30 Score=317.56 Aligned_cols=301 Identities=21% Similarity=0.233 Sum_probs=200.9
Q ss_pred HHHHHHHHHHcCCC-cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhccc-
Q 000114 499 VQSRVYKSALSSAD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM- 576 (2158)
Q Consensus 499 iQ~~~i~~~l~~~~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~- 576 (2158)
+|.++++++++++. +++++||||||||.+|+++++.. ..+++|++|+++|+.|++++|.+.+..
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~--------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~ 66 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG--------------ENDTIALYPTNALIEDQTEAIKEFVDVF 66 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc--------------CCCEEEEeChHHHHHHHHHHHHHHHHhc
Confidence 59999999999875 68999999999999999998842 126899999999999999999998743
Q ss_pred ---CCcEEEEEeCCCccCHh-----------------------hhccccEEEcchhHHHHHHhccCC------Ccccccc
Q 000114 577 ---YDVKVRELSGDQTLTRQ-----------------------QIEETQIIVTTPEKWDIITRKSGD------RTYTQLV 624 (2158)
Q Consensus 577 ---~gi~v~~l~Gd~~~~~~-----------------------~~~~~~IiV~TPekld~l~r~~~~------~~~l~~v 624 (2158)
.++.+..++|+...+.+ ....+.|++|||+.|+.++|.+.. ..++..+
T Consensus 67 ~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~ 146 (357)
T TIGR03158 67 KPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKF 146 (357)
T ss_pred CCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCC
Confidence 36778888887332200 013578999999999988876421 1246889
Q ss_pred ceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc--ccCceEEecC---------
Q 000114 625 KLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN--LEKGLFYFDN--------- 693 (2158)
Q Consensus 625 ~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~--~~~~~~~f~~--------- 693 (2158)
++|||||+|.+.......+...+..+ ..+.......|++++|||++. .+..++... ....+....+
T Consensus 147 ~~iV~DE~H~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~i~lSAT~~~--~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~ 223 (357)
T TIGR03158 147 STVIFDEFHLYDAKQLVGMLFLLAYM-QLIRFFECRRKFVFLSATPDP--ALILRLQNAKQAGVKIAPIDGEKYQFPDNP 223 (357)
T ss_pred CEEEEecccccCcccchhhhhhhHHH-HHHHhhhcCCcEEEEecCCCH--HHHHHHHhccccCceeeeecCcccccCCCh
Confidence 99999999998754433333222222 222222335799999999873 455555421 1111111111
Q ss_pred ---------Ccccc--cceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccc
Q 000114 694 ---------SYRPV--PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDT 762 (2158)
Q Consensus 694 ---------~~rpv--~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~ 762 (2158)
.+||+ ++...+.. ........+..+.+.+.+.+ +...++++||||+|++.++.++..|.+.+.
T Consensus 224 ~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~-~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~---- 297 (357)
T TIGR03158 224 ELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERF-RQLPGERGAIILDSLDEVNRLSDLLQQQGL---- 297 (357)
T ss_pred hhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHH-hccCCCeEEEEECCHHHHHHHHHHHhhhCC----
Confidence 24443 33333332 11111111221222211111 112467999999999999999999986431
Q ss_pred cccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEE
Q 000114 763 LGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI 842 (2158)
Q Consensus 763 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vV 842 (2158)
...+..+||.+++.+|..+ ++.+|||||+++++|||+|.+. |
T Consensus 298 -------------------------------~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~~-v 339 (357)
T TIGR03158 298 -------------------------------GDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRDW-L 339 (357)
T ss_pred -------------------------------CceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCce-E
Confidence 1235678999999998654 4789999999999999999884 4
Q ss_pred EecccccCCCCCccccCCHHHHHHhhcccC
Q 000114 843 IKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2158)
Q Consensus 843 I~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2158)
|. +|. +..+|+||+||+|
T Consensus 340 i~-----~p~-------~~~~yiqR~GR~g 357 (357)
T TIGR03158 340 IF-----SAR-------DAAAFWQRLGRLG 357 (357)
T ss_pred EE-----CCC-------CHHHHhhhcccCC
Confidence 42 332 6779999999998
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=299.78 Aligned_cols=342 Identities=18% Similarity=0.253 Sum_probs=259.5
Q ss_pred cccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHH
Q 000114 1325 TALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (2158)
Q Consensus 1325 ~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa 1403 (2158)
-+|+..+++.+|. ||..|+.||+.|+..+..|.+ +++.+++|+|||.+|.+++++.+... .....+++++|+|+|+
T Consensus 31 m~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~d-v~~qaqsgTgKt~af~i~iLq~iD~~--~ke~qalilaPtreLa 107 (397)
T KOG0327|consen 31 MNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHD-VIAQAQSGTGKTAAFLISILQQIDMS--VKETQALILAPTRELA 107 (397)
T ss_pred cCCCHHHHhHHHhhccCCchHHHhccccccccCCc-eeEeeeccccchhhhHHHHHhhcCcc--hHHHHHHHhcchHHHH
Confidence 3566788999999 899999999999999988655 99999999999999999999887552 2233899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcCCcchh--hhccc--CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC
Q 000114 1404 KERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2158)
Q Consensus 1404 ~q~~~~~~~~f~~~~g~~v~~ltG~~~~~--~~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~ 1479 (2158)
.|..+... .++...+.+|..+.|+.... ...+. .++|+++||+++..++.+. ....+.++++|+||++.+...
T Consensus 108 ~qi~~v~~-~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~--~l~~~~iKmfvlDEaDEmLs~ 184 (397)
T KOG0327|consen 108 QQIQKVVR-ALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG--SLSTDGIKMFVLDEADEMLSR 184 (397)
T ss_pred HHHHHHHH-hhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc--cccccceeEEeecchHhhhcc
Confidence 99997766 67777889999888876654 22232 3599999999998888663 455677999999999988766
Q ss_pred CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHh
Q 000114 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQA 1558 (2158)
Q Consensus 1480 ~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~ 1558 (2158)
+ +...+..+..+++.+.|++++|||.+. ..++.+-+...+..+..-... ..++...+.+.....
T Consensus 185 g------fkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~---ltl~gikq~~i~v~k------ 249 (397)
T KOG0327|consen 185 G------FKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE---LTLEGIKQFYINVEK------ 249 (397)
T ss_pred c------hHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchh---hhhhheeeeeeeccc------
Confidence 5 667777788888999999999999986 445554443332221110000 001100000000000
Q ss_pred cChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEE
Q 000114 1559 MTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGY 1638 (2158)
Q Consensus 1559 ~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~ 1638 (2158)
.+.+..+........+++|||||++.+..+...|. ..++.+..
T Consensus 250 --~~k~~~l~dl~~~~~q~~if~nt~r~v~~l~~~L~-----------------------------------~~~~~~s~ 292 (397)
T KOG0327|consen 250 --EEKLDTLCDLYRRVTQAVIFCNTRRKVDNLTDKLR-----------------------------------AHGFTVSA 292 (397)
T ss_pred --cccccHHHHHHHhhhcceEEecchhhHHHHHHHHh-----------------------------------hCCceEEE
Confidence 00111222222356789999999999988775552 23456889
Q ss_pred ecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCc
Q 000114 1639 LHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNS 1718 (2158)
Q Consensus 1639 ~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~ 1718 (2158)
+|+.|.+.+|..+.+.|++|..+|||.|+.+++|+|+..+..|| ++..|.....|+||+||+||-| .+
T Consensus 293 ~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvi----------nydlP~~~~~yihR~gr~gr~g--rk 360 (397)
T KOG0327|consen 293 IHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVV----------NYDLPARKENYIHRIGRAGRFG--RK 360 (397)
T ss_pred eecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceee----------eeccccchhhhhhhcccccccC--CC
Confidence 99999999999999999999999999999999999999999999 7778888999999999999976 89
Q ss_pred eEEEEEecCChHHHHHHH
Q 000114 1719 GKCVILCHAPRKEYYKKF 1736 (2158)
Q Consensus 1719 G~~iil~~~~~~~~~~k~ 1736 (2158)
|.++-++...+...+++.
T Consensus 361 g~~in~v~~~d~~~lk~i 378 (397)
T KOG0327|consen 361 GVAINFVTEEDVRDLKDI 378 (397)
T ss_pred ceeeeeehHhhHHHHHhH
Confidence 999999998876665544
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-30 Score=342.20 Aligned_cols=359 Identities=20% Similarity=0.267 Sum_probs=264.0
Q ss_pred HHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHH
Q 000114 1332 YEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDW 1410 (2158)
Q Consensus 1332 ~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~ 1410 (2158)
..++.. |+..|.++|.+|+..+.++ +||+|+.|||||||.||++||+.++.+ .+.. +++||.||+||++++.+++
T Consensus 60 ~~~l~~~g~~~lY~HQ~~A~~~~~~G-~~vvVtTgTgSGKTe~FllPIld~~l~-~~~a--~AL~lYPtnALa~DQ~~rl 135 (851)
T COG1205 60 KSALVKAGIERLYSHQVDALRLIREG-RNVVVTTGTGSGKTESFLLPILDHLLR-DPSA--RALLLYPTNALANDQAERL 135 (851)
T ss_pred HHHHHHhccccccHHHHHHHHHHHCC-CCEEEECCCCCchhHHHHHHHHHHHhh-CcCc--cEEEEechhhhHhhHHHHH
Confidence 344444 6777999999999999885 679999999999999999999999998 3444 8999999999999999999
Q ss_pred HHHhcCCC-CcEEEEEcCCcchhhh---cccCCcEEEeCHHHHHHH-Hhhhhc-cccccceeEEEecccccccCCCCChH
Q 000114 1411 EIKFGQGL-GMRVVELTGETAMDLK---LLEKGQIIISTPEKWDAL-SRRWKQ-RKYVQQVSLFIIDELHLIGGQGGPVL 1484 (2158)
Q Consensus 1411 ~~~f~~~~-g~~v~~ltG~~~~~~~---~l~~~~IIV~TPe~l~~l-~r~~~~-~~~l~~v~llIiDEaH~l~~~~g~~~ 1484 (2158)
++...... ++++..++||+....+ .-+.++|+++||.+|..+ ++.+.. ...++++++||+||+|..-+-.|..+
T Consensus 136 ~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~v 215 (851)
T COG1205 136 RELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEV 215 (851)
T ss_pred HHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHH
Confidence 95555442 4889999999988765 356779999999999874 443222 22467799999999999988889999
Q ss_pred HHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHH--HhcChH
Q 000114 1485 EVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM--QAMTKP 1562 (2158)
Q Consensus 1485 e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~--~~~~k~ 1562 (2158)
-.++.|++.+....+.+.++|+.|||++|..+++.-+.......- +..+..|-.....+...+........ .+....
T Consensus 216 A~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~-v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~ 294 (851)
T COG1205 216 ALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVP-VDEDGSPRGLRYFVRREPPIRELAESIRRSALAE 294 (851)
T ss_pred HHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceee-ccCCCCCCCceEEEEeCCcchhhhhhcccchHHH
Confidence 999999999999888999999999999998777665544433331 22233333333333222211111111 001111
Q ss_pred HHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCC
Q 000114 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (2158)
Q Consensus 1563 ~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~ 1642 (2158)
.-..+...+..+-++|+|+.++++++.+...........+ ..+...+..|||+
T Consensus 295 ~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~---------------------------~~l~~~v~~~~~~ 347 (851)
T COG1205 295 LATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREG---------------------------GKLLDAVSTYRAG 347 (851)
T ss_pred HHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcc---------------------------hhhhhheeecccc
Confidence 1122223346788999999999999888643322111110 1133458999999
Q ss_pred CCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCC-CHHHHHHhhccCCCCCCCCceEE
Q 000114 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDY-PVTDLLQMMGHASRPLLDNSGKC 1721 (2158)
Q Consensus 1643 l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~-s~~~~lQr~GRaGR~g~d~~G~~ 1721 (2158)
|...+|.+++..|+.|++.++++|+++.-|+|+-++..|| ....|. +..+++||+|||||.+ ..+..
T Consensus 348 ~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi----------~~g~P~~s~~~~~Q~~GRaGR~~--~~~l~ 415 (851)
T COG1205 348 LHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVI----------AYGYPGVSVLSFRQRAGRAGRRG--QESLV 415 (851)
T ss_pred CCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHh----------hcCCCCchHHHHHHhhhhccCCC--CCceE
Confidence 9999999999999999999999999999999999999998 445666 8999999999999987 44554
Q ss_pred EEEecC-ChHHHHH
Q 000114 1722 VILCHA-PRKEYYK 1734 (2158)
Q Consensus 1722 iil~~~-~~~~~~~ 1734 (2158)
++.... +-..||.
T Consensus 416 ~~v~~~~~~d~yy~ 429 (851)
T COG1205 416 LVVLRSDPLDSYYL 429 (851)
T ss_pred EEEeCCCccchhhh
Confidence 444443 2334544
|
|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=300.05 Aligned_cols=331 Identities=22% Similarity=0.378 Sum_probs=247.5
Q ss_pred hHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHH
Q 000114 486 AQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (2158)
Q Consensus 486 ~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~ 564 (2158)
++.+| -||++|+.||+.|+..+..|.+ +++.|++|+|||.+|.+++++.+... .....+++++|+++|++
T Consensus 38 Lrgiy~yGFekPSaIQqraI~p~i~G~d-v~~qaqsgTgKt~af~i~iLq~iD~~--------~ke~qalilaPtreLa~ 108 (397)
T KOG0327|consen 38 LRGIYAYGFEKPSAIQQRAILPCIKGHD-VIAQAQSGTGKTAAFLISILQQIDMS--------VKETQALILAPTRELAQ 108 (397)
T ss_pred HhHHHhhccCCchHHHhccccccccCCc-eeEeeeccccchhhhHHHHHhhcCcc--------hHHHHHHHhcchHHHHH
Confidence 44555 6999999999999999988855 99999999999999999999987432 23457999999999999
Q ss_pred HHHHHHHhhcccCCcEEEEEeCCCccCHh--hh--ccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccccc-C
Q 000114 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QI--EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2158)
Q Consensus 565 q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~--~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~ 638 (2158)
|+.......+...+.+|..+.|+.....+ .+ ..++|+|+||++. +.+.+.. .....++++|+||++.+.. +
T Consensus 109 qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~---l~~~~iKmfvlDEaDEmLs~g 185 (397)
T KOG0327|consen 109 QIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGS---LSTDGIKMFVLDEADEMLSRG 185 (397)
T ss_pred HHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcccc---ccccceeEEeecchHhhhccc
Confidence 99999888888889999999998776532 22 3579999999997 5555542 4566799999999998776 6
Q ss_pred ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEec--CCcccccceeEEEeeccCChhHHH
Q 000114 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFD--NSYRPVPLSQQYIGIQVKKPLQRF 716 (2158)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~--~~~rpv~l~~~~~~~~~~~~~~~~ 716 (2158)
+...++.|... .+.++|++++|||.|. ++...-...+..++.... ....---..+.++.+.... ++
T Consensus 186 fkdqI~~if~~-------lp~~vQv~l~SAT~p~--~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~---k~ 253 (397)
T KOG0327|consen 186 FKDQIYDIFQE-------LPSDVQVVLLSATMPS--DVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE---KL 253 (397)
T ss_pred hHHHHHHHHHH-------cCcchhheeecccCcH--HHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc---cc
Confidence 76666666554 4788999999999984 333222222122111111 1111111222233222221 33
Q ss_pred HHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCC
Q 000114 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (2158)
Q Consensus 717 ~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~g 796 (2158)
..+..+ |+ ...+.+|||||++.+..+...|...+..
T Consensus 254 ~~l~dl-~~------~~~q~~if~nt~r~v~~l~~~L~~~~~~------------------------------------- 289 (397)
T KOG0327|consen 254 DTLCDL-YR------RVTQAVIFCNTRRKVDNLTDKLRAHGFT------------------------------------- 289 (397)
T ss_pred cHHHHH-HH------hhhcceEEecchhhHHHHHHHHhhCCce-------------------------------------
Confidence 332222 22 3568999999999999999988654432
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCC
Q 000114 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (2158)
Q Consensus 797 v~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (2158)
+...||.|.+.+|..+.+.|+.|..+|||+|+.+|+|+|+-.+.+||+ |+.|. ...+|+||+||+||-|
T Consensus 290 ~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvin----ydlP~------~~~~yihR~gr~gr~g- 358 (397)
T KOG0327|consen 290 VSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVN----YDLPA------RKENYIHRIGRAGRFG- 358 (397)
T ss_pred EEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeee----ecccc------chhhhhhhcccccccC-
Confidence 455699999999999999999999999999999999999999999999 55444 4567999999999955
Q ss_pred CCccEEEEEcCCCcHHHHHH
Q 000114 877 DSYGEGIIITGHSELRYYLS 896 (2158)
Q Consensus 877 d~~G~~iil~~~~~~~~y~~ 896 (2158)
.+|.++-+++..+...+.+
T Consensus 359 -rkg~~in~v~~~d~~~lk~ 377 (397)
T KOG0327|consen 359 -RKGVAINFVTEEDVRDLKD 377 (397)
T ss_pred -CCceeeeeehHhhHHHHHh
Confidence 8899999999887666554
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=315.42 Aligned_cols=301 Identities=19% Similarity=0.256 Sum_probs=204.5
Q ss_pred HHHHHHHHHhcCCC-cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC---CCc
Q 000114 1345 IQTQVFTVLYNTDD-NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG---LGM 1420 (2158)
Q Consensus 1345 iQ~q~~~~l~~~~~-nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~---~g~ 1420 (2158)
+|+++|+++++++. +++++||||||||.||++|++. ... +++|++|+++|+.|++++|++.+... .+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~------~~~--~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH------GEN--DTIALYPTNALIEDQTEAIKEFVDVFKPERDV 72 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH------cCC--CEEEEeChHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 49999999999875 6899999999999999999983 133 78999999999999999999777432 367
Q ss_pred EEEEEcCCcchhhhc-----------------------ccCCcEEEeCHHHHHHHHhhhhccc------cccceeEEEec
Q 000114 1421 RVVELTGETAMDLKL-----------------------LEKGQIIISTPEKWDALSRRWKQRK------YVQQVSLFIID 1471 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~~~-----------------------l~~~~IIV~TPe~l~~l~r~~~~~~------~l~~v~llIiD 1471 (2158)
.+..++|++..+.+. ...++|+++||+.|..++++|.... .+.+++++|+|
T Consensus 73 ~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~D 152 (357)
T TIGR03158 73 NLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFD 152 (357)
T ss_pred eEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEe
Confidence 788889875443111 2356899999999999888763322 36899999999
Q ss_pred ccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh--HHHHHH--hccCCCce----EecCC----------
Q 000114 1472 ELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEW--IGATSHGL----FNFPP---------- 1533 (2158)
Q Consensus 1472 EaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~--~dl~~w--l~~~~~~i----~~f~~---------- 1533 (2158)
|+|.+..+.+..+...+..+..+... ....+++++|||++.. +.+.+. ++.....+ +.+..
T Consensus 153 E~H~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 231 (357)
T TIGR03158 153 EFHLYDAKQLVGMLFLLAYMQLIRFF-ECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKT 231 (357)
T ss_pred cccccCcccchhhhhhhHHHHHHHhh-hcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccc
Confidence 99999866655555455555544332 3357999999998752 222221 12111000 11110
Q ss_pred -CCccc--ccEEEEecccccchHHHHHhcChHHHHHHHHhH--hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccc
Q 000114 1534 -GVRPV--PLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608 (2158)
Q Consensus 1534 -~~rpv--~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~--~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~ 1608 (2158)
.+||+ +++..+.. ........ .+.....+.+.+ .+++++||||+|++.|+.++..|...
T Consensus 232 ~~~~~~~~~i~~~~~~--~~~~~~~~---l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~----------- 295 (357)
T TIGR03158 232 QSFRPVLPPVELELIP--APDFKEEE---LSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQ----------- 295 (357)
T ss_pred cccceeccceEEEEEe--CCchhHHH---HHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhh-----------
Confidence 22322 23333322 11111110 111222222222 25678999999999999999766321
Q ss_pred cCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceee
Q 000114 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYY 1688 (2158)
Q Consensus 1609 l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~y 1688 (2158)
..+..+..+||.+++.+|..+ ++.+|||||+++++|||+|.+.||+
T Consensus 296 ----------------------~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~~vi~------ 341 (357)
T TIGR03158 296 ----------------------GLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRDWLIF------ 341 (357)
T ss_pred ----------------------CCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCceEEE------
Confidence 012347789999999998654 4789999999999999999885553
Q ss_pred cCCCCcCcCCCHHHHHHhhccCC
Q 000114 1689 DGQENAHTDYPVTDLLQMMGHAS 1711 (2158)
Q Consensus 1689 d~~~~~~~~~s~~~~lQr~GRaG 1711 (2158)
.|.+..+|+||+||+|
T Consensus 342 -------~p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 342 -------SARDAAAFWQRLGRLG 357 (357)
T ss_pred -------CCCCHHHHhhhcccCC
Confidence 1457999999999997
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=333.39 Aligned_cols=441 Identities=14% Similarity=0.150 Sum_probs=281.2
Q ss_pred HHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCC
Q 000114 1349 VFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGE 1428 (2158)
Q Consensus 1349 ~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~ 1428 (2158)
.|...+.+++.++|+|+||||||+ .+|.+-.-......+ ++++..|.|--+...+.++...++..+|..|+.-..
T Consensus 81 ~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g~~g--~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vr- 155 (1294)
T PRK11131 81 DILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRGVKG--LIGHTQPRRLAARTVANRIAEELETELGGCVGYKVR- 155 (1294)
T ss_pred HHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCCCCC--ceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeec-
Confidence 344445567779999999999998 467432221111223 677788976555555555554444333434432211
Q ss_pred cchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccc-ccCCCCChHHHHHHHHHHHHhhcCCCceEEEe
Q 000114 1429 TAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL-IGGQGGPVLEVIVSRMRYIASQVENKIRIVAL 1507 (2158)
Q Consensus 1429 ~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~-l~~~~g~~~e~~isrl~~i~~~~~~~~riV~l 1507 (2158)
.+.+.-..++|+|+||+++...+.. ...++++++|||||||. ..+.. .++..++.+... .++.|+|++
T Consensus 156 --f~~~~s~~t~I~v~TpG~LL~~l~~---d~~Ls~~~~IIIDEAHERsLn~D-----fLLg~Lk~lL~~-rpdlKvILm 224 (1294)
T PRK11131 156 --FNDQVSDNTMVKLMTDGILLAEIQQ---DRLLMQYDTIIIDEAHERSLNID-----FILGYLKELLPR-RPDLKVIIT 224 (1294)
T ss_pred --CccccCCCCCEEEEChHHHHHHHhc---CCccccCcEEEecCccccccccc-----hHHHHHHHhhhc-CCCceEEEe
Confidence 1112224679999999998877654 45689999999999994 43321 123334444332 246899999
Q ss_pred ccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHh-HhcCCCEEEEecChHH
Q 000114 1508 STSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQH-AKNEKPALVFVPSRKY 1586 (2158)
Q Consensus 1508 SATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~-~~~~~~~IVFv~sr~~ 1586 (2158)
|||+ +.+.++++++..+ ++.... +..|+++.+........... ..........+... ....+.+||||+++.+
T Consensus 225 SATi-d~e~fs~~F~~ap--vI~V~G--r~~pVei~y~p~~~~~~~~~-~d~l~~ll~~V~~l~~~~~GdILVFLpg~~E 298 (1294)
T PRK11131 225 SATI-DPERFSRHFNNAP--IIEVSG--RTYPVEVRYRPIVEEADDTE-RDQLQAIFDAVDELGREGPGDILIFMSGERE 298 (1294)
T ss_pred eCCC-CHHHHHHHcCCCC--EEEEcC--ccccceEEEeecccccchhh-HHHHHHHHHHHHHHhcCCCCCEEEEcCCHHH
Confidence 9999 5678888876433 344433 33444544433221110000 00001111111111 1345789999999999
Q ss_pred HHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEec
Q 000114 1587 VRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMS 1666 (2158)
Q Consensus 1587 ~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT 1666 (2158)
++.++..|.... .-...|..+||+|+.++|..+++. .|..+|||||
T Consensus 299 Ie~lae~L~~~~--------------------------------~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVAT 344 (1294)
T PRK11131 299 IRDTADALNKLN--------------------------------LRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLAT 344 (1294)
T ss_pred HHHHHHHHHhcC--------------------------------CCcceEeecccCCCHHHHHHHhcc--cCCeeEEEec
Confidence 999997774210 001237789999999999999986 5889999999
Q ss_pred CccccccCCCccEEEEe-c---ceeecCCCCc----CcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHh-
Q 000114 1667 SSMCWGVPLTAHLVVVM-G---TQYYDGQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFL- 1737 (2158)
Q Consensus 1667 ~~la~Gvdlp~~~vVI~-g---t~~yd~~~~~----~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l- 1737 (2158)
+++++|||+|++.+||. | ...||++.+. ..+.|..+|.||+|||||. ..|.||.+++..+ |..+.
T Consensus 345 NIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d---~~~~~~ 418 (1294)
T PRK11131 345 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDD---FLSRPE 418 (1294)
T ss_pred cHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHH---HHhhhc
Confidence 99999999999999993 2 3567776442 2346678999999999996 5899999998643 33332
Q ss_pred -hCCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccHHHHHHHHHHHHHHHHH
Q 000114 1738 -YDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLE 1816 (2158)
Q Consensus 1738 -~~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~lve~~l~~L~ 1816 (2158)
..|+...++|...+.... +-.+.+..+ | .| ...|+- +.|++++..|.
T Consensus 419 ~~~PEIlR~~L~~viL~lk-----~lgl~di~~---F---~f-----ldpP~~----------------~~i~~al~~L~ 466 (1294)
T PRK11131 419 FTDPEILRTNLASVILQMT-----ALGLGDIAA---F---PF-----VEAPDK----------------RNIQDGVRLLE 466 (1294)
T ss_pred ccCCccccCCHHHHHHHHH-----HcCCCCcce---e---eC-----CCCCCH----------------HHHHHHHHHHH
Confidence 367777888865544322 212222211 1 11 244432 78999999999
Q ss_pred hCCCeeEcCC-CcccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHhcCccccCCCCCcchHH
Q 000114 1817 ASKCIIIEED-MDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEE 1885 (2158)
Q Consensus 1817 ~~~~I~~~~~-~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~ 1885 (2158)
+.|+|..+++ +....|++|+.+|.++++|...+++..+....+ ..+++.|.|.- ...+...|+.+..
T Consensus 467 ~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c-~~evl~IaA~L-sv~dpf~~p~~~~ 534 (1294)
T PRK11131 467 ELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGC-VREVMIITSAL-SIQDPRERPMDKQ 534 (1294)
T ss_pred HCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCC-HHHHHHHHHHH-cCCCcccCCchhH
Confidence 9999964322 246789999999999999999999998766554 46666655533 2345555665543
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=326.99 Aligned_cols=325 Identities=18% Similarity=0.195 Sum_probs=205.0
Q ss_pred HHHHhc---CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHH
Q 000114 1332 YEALYQ---GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2158)
Q Consensus 1332 ~~~l~~---gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~ 1408 (2158)
|..+|. ||. |+|||.++++.++.+.+++++.||||||||.++.++++..... ....-+.||++|+|+|+.|+++
T Consensus 4 f~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~--~~~~~rLv~~vPtReLa~Qi~~ 80 (844)
T TIGR02621 4 FDEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIG--AKVPRRLVYVVNRRTVVDQVTE 80 (844)
T ss_pred HHHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccccc--ccccceEEEeCchHHHHHHHHH
Confidence 444554 687 9999999999999887778999999999998665444422111 1111156678899999999999
Q ss_pred HHHHHhcCCC-----------------------CcEEEEEcCCcchhh--h-cccCCcEEEeCHHHHHH--HHhhhh---
Q 000114 1409 DWEIKFGQGL-----------------------GMRVVELTGETAMDL--K-LLEKGQIIISTPEKWDA--LSRRWK--- 1457 (2158)
Q Consensus 1409 ~~~~~f~~~~-----------------------g~~v~~ltG~~~~~~--~-~l~~~~IIV~TPe~l~~--l~r~~~--- 1457 (2158)
.+.+ +++.+ ++++..++|+...+. . .-..++|||+|++.+.+ +.+.+.
T Consensus 81 ~~~~-~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~ 159 (844)
T TIGR02621 81 EAEK-IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGF 159 (844)
T ss_pred HHHH-HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCcccccccccc
Confidence 9884 44322 478999999977642 2 33456999999765432 000000
Q ss_pred -----ccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhc--CC---CceEEEeccCCCC-hHHHHHHhccCCC
Q 000114 1458 -----QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV--EN---KIRIVALSTSLAN-AKDLGEWIGATSH 1526 (2158)
Q Consensus 1458 -----~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~--~~---~~riV~lSATl~n-~~dl~~wl~~~~~ 1526 (2158)
....+.+++++|+|||| + +.. +...+..|.+.+ +. +.|+++||||++. ..++...+.....
T Consensus 160 ~~~pi~ag~L~~v~~LVLDEAD-L-d~g------F~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~ 231 (844)
T TIGR02621 160 KSRPLHAGFLGQDALIVHDEAH-L-EPA------FQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDY 231 (844)
T ss_pred ccccchhhhhccceEEEEehhh-h-ccc------cHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCc
Confidence 00136889999999999 3 222 222333333321 22 3699999999975 3344444433321
Q ss_pred ceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHH-hHhcCCCEEEEecChHHHHHHHHHHHhhcccCCccc
Q 000114 1527 GLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQ-HAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQK 1605 (2158)
Q Consensus 1527 ~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~-~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~ 1605 (2158)
. +.........+-..++ +.... ..... .....+.. ....++++||||||++.|+.++..|..
T Consensus 232 ~-i~V~~~~l~a~ki~q~--v~v~~-e~Kl~----~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~--------- 294 (844)
T TIGR02621 232 K-HPVLKKRLAAKKIVKL--VPPSD-EKFLS----TMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPK--------- 294 (844)
T ss_pred e-eecccccccccceEEE--EecCh-HHHHH----HHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHh---------
Confidence 1 1111111111000111 11111 00111 01111111 113567899999999999999976621
Q ss_pred ccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHH-----HHHHHHHc----CC-------ceEEEecCcc
Q 000114 1606 SAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQE-----VVSALFEA----GK-------IKVCVMSSSM 1669 (2158)
Q Consensus 1606 ~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~-----~v~~~F~~----g~-------i~VLVaT~~l 1669 (2158)
.++..+||+|++.+|. .+++.|++ |. .+|||||+++
T Consensus 295 ----------------------------~g~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVa 346 (844)
T TIGR02621 295 ----------------------------EKFELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAG 346 (844)
T ss_pred ----------------------------cCCeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchh
Confidence 2347899999999999 88999987 54 7899999999
Q ss_pred ccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEec
Q 000114 1670 CWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCH 1726 (2158)
Q Consensus 1670 a~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~ 1726 (2158)
++|||++...+|. ...|+.+|+||+||+||.|....+.++++..
T Consensus 347 erGLDId~d~VI~-------------d~aP~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 347 EVGVNISADHLVC-------------DLAPFESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hhcccCCcceEEE-------------CCCCHHHHHHHhcccCCCCCCCCceEEEEee
Confidence 9999999854443 1246899999999999998444444444433
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=319.41 Aligned_cols=302 Identities=18% Similarity=0.216 Sum_probs=196.8
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCH-
Q 000114 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR- 592 (2158)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~- 592 (2158)
++++||||||||.+|++++++.+... ...+++|++|+++|+.|+++++...++. .++.++|+.....
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~---------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~ 69 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQ---------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRI 69 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhC---------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHH
Confidence 79999999999999999999887543 2348999999999999999999997653 4555555432100
Q ss_pred ----------h----------hhccccEEEcchhHH-HHHHhccCC-Ccccc--ccceEEeecccccccCChhhHHHHHH
Q 000114 593 ----------Q----------QIEETQIIVTTPEKW-DIITRKSGD-RTYTQ--LVKLLIIDEIHLLHDNRGPVLESIVA 648 (2158)
Q Consensus 593 ----------~----------~~~~~~IiV~TPekl-d~l~r~~~~-~~~l~--~v~lIIiDEaH~l~d~rg~~le~iv~ 648 (2158)
. .....+|+|+||+++ ..+.+.... ...+. ..++|||||+|.+.+.....+..++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~ 149 (358)
T TIGR01587 70 KEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLE 149 (358)
T ss_pred hccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 012467999999997 333331111 01111 23789999999987642222443333
Q ss_pred HHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCccccc---ceeEEEeeccCChhHHHHHhhHHHHH
Q 000114 649 RTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVP---LSQQYIGIQVKKPLQRFQLMNDLCYE 725 (2158)
Q Consensus 649 r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~---l~~~~~~~~~~~~~~~~~~l~~~~~~ 725 (2158)
.+ . ..+.|++++|||+| +.+..|+....... ........+ ...+.+.............+..+
T Consensus 150 ~l----~--~~~~~~i~~SATlp--~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--- 215 (358)
T TIGR01587 150 VL----K--DNDVPILLMSATLP--KFLKEYAEKIGYVE---FNEPLDLKEERRFERHRFIKIESDKVGEISSLERL--- 215 (358)
T ss_pred HH----H--HcCCCEEEEecCch--HHHHHHHhcCCCcc---cccCCCCccccccccccceeeccccccCHHHHHHH---
Confidence 33 2 34689999999998 55677765321110 000000000 11111111111111111111111
Q ss_pred HHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCC
Q 000114 726 KVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMT 805 (2158)
Q Consensus 726 ~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~ 805 (2158)
+.....++++||||+|++.|+.++..|.+.+.. ..+..+||+|+
T Consensus 216 -~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~-----------------------------------~~~~~~h~~~~ 259 (358)
T TIGR01587 216 -LEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPE-----------------------------------EEIMLLHSRFT 259 (358)
T ss_pred -HHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCC-----------------------------------CeEEEEECCCC
Confidence 122234789999999999999999999875421 24778899999
Q ss_pred HHHHHHH----HHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCC--Cc
Q 000114 806 RGDRQLV----EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD--SY 879 (2158)
Q Consensus 806 ~~~R~~v----~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d--~~ 879 (2158)
+.+|..+ ++.|++|..+|||||+++++|||+| +++||+ +.. ++.+|+||+||+||.|.. ..
T Consensus 260 ~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~----~~~--------~~~~~iqr~GR~gR~g~~~~~~ 326 (358)
T TIGR01587 260 EKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMIT----ELA--------PIDSLIQRLGRLHRYGRKNGEN 326 (358)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEE----cCC--------CHHHHHHHhccccCCCCCCCCC
Confidence 9999764 7899999999999999999999997 556665 321 456899999999998754 23
Q ss_pred cEEEEEcCCCc
Q 000114 880 GEGIIITGHSE 890 (2158)
Q Consensus 880 G~~iil~~~~~ 890 (2158)
|.++++...++
T Consensus 327 ~~~~v~~~~~~ 337 (358)
T TIGR01587 327 FEVYIITIAPE 337 (358)
T ss_pred CeEEEEeecCC
Confidence 58888876654
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-30 Score=299.20 Aligned_cols=344 Identities=20% Similarity=0.277 Sum_probs=260.0
Q ss_pred CcccccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccH
Q 000114 1322 LPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLE 1400 (2158)
Q Consensus 1322 ~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~r 1400 (2158)
++.-.|....+.++.. ||..|+|+|++.+|.++++.+ ++..|-||||||.||.+|+++++.... ..+.|+++++|++
T Consensus 23 fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~d-vv~martgsgktaaf~ipm~e~Lk~~s-~~g~Ralilsptr 100 (529)
T KOG0337|consen 23 FQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRD-VVGMARTGSGKTAAFLIPMIEKLKSHS-QTGLRALILSPTR 100 (529)
T ss_pred ccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccc-cceeeecCCcchhhHHHHHHHHHhhcc-ccccceeeccCcH
Confidence 3344667778888877 899999999999999999777 999999999999999999999999865 5567999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhh--h-cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccccc
Q 000114 1401 ALAKERYRDWEIKFGQGLGMRVVELTGETAMDL--K-LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1401 aLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~--~-~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
+|+.|..+.++ .+++..++++..+.|+.+... . .-.++|||++||+++..+.-.. ...++.|.+||+||++.|.
T Consensus 101 eLa~qtlkvvk-dlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem--~l~l~sveyVVfdEadrlf 177 (529)
T KOG0337|consen 101 ELALQTLKVVK-DLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEM--TLTLSSVEYVVFDEADRLF 177 (529)
T ss_pred HHHHHHHHHHH-HhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhe--eccccceeeeeehhhhHHH
Confidence 99999999888 789888899887777655442 2 3347899999999987554432 2458899999999999987
Q ss_pred CCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHH
Q 000114 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (2158)
Q Consensus 1478 ~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~ 1557 (2158)
+.+ +-.++..+..+++...|.+++|||+|+. +.+|-.+.. ..|+-+.+.+..--.........
T Consensus 178 emg------fqeql~e~l~rl~~~~QTllfSatlp~~--lv~fakaGl---------~~p~lVRldvetkise~lk~~f~ 240 (529)
T KOG0337|consen 178 EMG------FQEQLHEILSRLPESRQTLLFSATLPRD--LVDFAKAGL---------VPPVLVRLDVETKISELLKVRFF 240 (529)
T ss_pred hhh------hHHHHHHHHHhCCCcceEEEEeccCchh--hHHHHHccC---------CCCceEEeehhhhcchhhhhhee
Confidence 654 6677777777888888999999999853 444443321 11222221111111111111111
Q ss_pred hcC---h-HHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhc
Q 000114 1558 AMT---K-PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (2158)
Q Consensus 1558 ~~~---k-~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (2158)
... + ..+..++......++++|||+|+..++.+..-| ...+
T Consensus 241 ~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll-----------------------------------~~~g 285 (529)
T KOG0337|consen 241 RVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLL-----------------------------------RDFG 285 (529)
T ss_pred eeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHH-----------------------------------HhcC
Confidence 111 1 112222222233557999999999997776433 2246
Q ss_pred ccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCC
Q 000114 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRP 1713 (2158)
Q Consensus 1634 ~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~ 1713 (2158)
.++..++|.|.+..|..-...|..++..+||.|++++||+|+|-..-|| |++.|....-|+||+||+.|+
T Consensus 286 ~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvi----------nyd~p~~~klFvhRVgr~ara 355 (529)
T KOG0337|consen 286 GEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVI----------NYDFPPDDKLFVHRVGRVARA 355 (529)
T ss_pred CCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccc----------cccCCCCCceEEEEecchhhc
Confidence 6788899999999999999999999999999999999999999888787 788888888899999999998
Q ss_pred CCCCceEEEEEecCChHHHHH
Q 000114 1714 LLDNSGKCVILCHAPRKEYYK 1734 (2158)
Q Consensus 1714 g~d~~G~~iil~~~~~~~~~~ 1734 (2158)
| ..|.+|-++.+.+..|+.
T Consensus 356 g--rtg~aYs~V~~~~~~yl~ 374 (529)
T KOG0337|consen 356 G--RTGRAYSLVASTDDPYLL 374 (529)
T ss_pred c--ccceEEEEEecccchhhh
Confidence 7 789999988887755543
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-29 Score=312.81 Aligned_cols=304 Identities=18% Similarity=0.195 Sum_probs=197.3
Q ss_pred EEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchh-------
Q 000114 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD------- 1432 (2158)
Q Consensus 1360 vli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~------- 1432 (2158)
++|+||||||||++|+++++..+.. ...+ +++|++|+++|+.|++++++..|+. +++.++|.....
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~-~~~~--~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~~ 74 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKS-QKAD--RVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMGD 74 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhh-CCCC--eEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccCC
Confidence 7999999999999999999988765 3344 9999999999999999999987764 344444432210
Q ss_pred --------------hhcccCCcEEEeCHHHHHHHHhh-hhcc-cccc--ceeEEEecccccccCCCCChHHHHHHHHHHH
Q 000114 1433 --------------LKLLEKGQIIISTPEKWDALSRR-WKQR-KYVQ--QVSLFIIDELHLIGGQGGPVLEVIVSRMRYI 1494 (2158)
Q Consensus 1433 --------------~~~l~~~~IIV~TPe~l~~l~r~-~~~~-~~l~--~v~llIiDEaH~l~~~~g~~~e~~isrl~~i 1494 (2158)
......++|+|+||+++...+.. .... ..+. ..+++|+||+|.+.+... +.+...+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~---~~l~~~l~~l 151 (358)
T TIGR01587 75 SEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTL---ALILAVLEVL 151 (358)
T ss_pred chhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHH---HHHHHHHHHH
Confidence 00123458999999998765443 1111 1111 237999999999976432 2233333333
Q ss_pred HhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccc-cEEEEecccccchHHHHHhcChHHHHHHHHhHhc
Q 000114 1495 ASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVP-LEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKN 1573 (2158)
Q Consensus 1495 ~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~-l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~ 1573 (2158)
. ..+.|++++|||++ +.+.+|+...............+.. ...+......... .........+......
T Consensus 152 ~---~~~~~~i~~SATlp--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~l~~~~~~ 221 (358)
T TIGR01587 152 K---DNDVPILLMSATLP--KFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDK-----VGEISSLERLLEFIKK 221 (358)
T ss_pred H---HcCCCEEEEecCch--HHHHHHHhcCCCcccccCCCCccccccccccceeecccc-----ccCHHHHHHHHHHhhC
Confidence 2 24789999999997 3455555332111000000000000 0000000000000 0111222333343356
Q ss_pred CCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH--
Q 000114 1574 EKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV-- 1651 (2158)
Q Consensus 1574 ~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v-- 1651 (2158)
++++||||+|++.|+.++..|.... ....+..+||++++.+|..+
T Consensus 222 ~~~~lVf~~t~~~~~~~~~~L~~~~---------------------------------~~~~~~~~h~~~~~~~r~~~~~ 268 (358)
T TIGR01587 222 GGKIAIIVNTVDRAQEFYQQLKENA---------------------------------PEEEIMLLHSRFTEKDRAKKEA 268 (358)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhhc---------------------------------CCCeEEEEECCCCHHHHHHHHH
Confidence 7899999999999999997764311 11258999999999999764
Q ss_pred --HHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCC--CceEEEEEecC
Q 000114 1652 --SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD--NSGKCVILCHA 1727 (2158)
Q Consensus 1652 --~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d--~~G~~iil~~~ 1727 (2158)
++.|++|..+|||||+++++|+|+|...+|. .+.|+.+|+||+||+||.|.. ..|.++++...
T Consensus 269 ~~~~~f~~~~~~ilvaT~~~~~GiDi~~~~vi~-------------~~~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~ 335 (358)
T TIGR01587 269 ELLEEMKKNEKFVIVATQVIEASLDISADVMIT-------------ELAPIDSLIQRLGRLHRYGRKNGENFEVYIITIA 335 (358)
T ss_pred HHHHHhcCCCCeEEEECcchhceeccCCCEEEE-------------cCCCHHHHHHHhccccCCCCCCCCCCeEEEEeec
Confidence 7899999999999999999999998665554 245789999999999998743 23588888776
Q ss_pred Ch
Q 000114 1728 PR 1729 (2158)
Q Consensus 1728 ~~ 1729 (2158)
+.
T Consensus 336 ~~ 337 (358)
T TIGR01587 336 PE 337 (358)
T ss_pred CC
Confidence 54
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=292.07 Aligned_cols=338 Identities=20% Similarity=0.242 Sum_probs=227.5
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000114 1337 QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2158)
Q Consensus 1337 ~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~ 1416 (2158)
++.-+++.+|..+....+. .|+||+.|||=|||++|.+.+...+.. .++ ++|+++||+-|+.|.+..+++.++
T Consensus 11 p~~ie~R~YQ~~i~a~al~--~NtLvvlPTGLGKT~IA~~V~~~~l~~--~~~--kvlfLAPTKPLV~Qh~~~~~~v~~- 83 (542)
T COG1111 11 PNTIEPRLYQLNIAAKALF--KNTLVVLPTGLGKTFIAAMVIANRLRW--FGG--KVLFLAPTKPLVLQHAEFCRKVTG- 83 (542)
T ss_pred cccccHHHHHHHHHHHHhh--cCeEEEecCCccHHHHHHHHHHHHHHh--cCC--eEEEecCCchHHHHHHHHHHHHhC-
Confidence 3456889999999988875 389999999999999999999988877 233 899999999999999999996554
Q ss_pred CCCcEEEEEcCCcchh--hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHH
Q 000114 1417 GLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYI 1494 (2158)
Q Consensus 1417 ~~g~~v~~ltG~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i 1494 (2158)
...-.++.+||....+ ...+.+++|+|+||+.+.+=+.. ++..+.++.|+|+||||+-. +++.|-.+......
T Consensus 84 ip~~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~--Grid~~dv~~lifDEAHRAv--GnyAYv~Va~~y~~- 158 (542)
T COG1111 84 IPEDEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKA--GRIDLDDVSLLIFDEAHRAV--GNYAYVFVAKEYLR- 158 (542)
T ss_pred CChhheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhc--CccChHHceEEEechhhhcc--CcchHHHHHHHHHH-
Confidence 3345789999998877 44778889999999998665444 56678999999999999864 33344434332221
Q ss_pred HhhcCCCceEEEeccCCCCh----HHHHHHhccCCCceE-ecCCCCcccccEEEE--ecccccchHHH----HHhcChHH
Q 000114 1495 ASQVENKIRIVALSTSLANA----KDLGEWIGATSHGLF-NFPPGVRPVPLEIHI--QGVDITNFEAR----MQAMTKPT 1563 (2158)
Q Consensus 1495 ~~~~~~~~riV~lSATl~n~----~dl~~wl~~~~~~i~-~f~~~~rpv~l~~~i--~~~~~~~~~~~----~~~~~k~~ 1563 (2158)
..++++++|||||+++. .++.+-||.....+- .-+++++|.--.+.+ ...+.+..... +..+.++.
T Consensus 159 ---~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~ 235 (542)
T COG1111 159 ---SAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPR 235 (542)
T ss_pred ---hccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHH
Confidence 25688999999999873 344455555432211 124444443222111 11111100000 00000000
Q ss_pred HH------------------------------------------------------------------------------
Q 000114 1564 FT------------------------------------------------------------------------------ 1565 (2158)
Q Consensus 1564 ~~------------------------------------------------------------------------------ 1565 (2158)
+.
T Consensus 236 Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~ 315 (542)
T COG1111 236 LKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATK 315 (542)
T ss_pred HHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcc
Confidence 00
Q ss_pred ----------------------------------------HHHHhH--hcCCCEEEEecChHHHHHHHHHHHhhcccCCc
Q 000114 1566 ----------------------------------------AIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGD 1603 (2158)
Q Consensus 1566 ----------------------------------------~i~~~~--~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~ 1603 (2158)
.+..++ ..+.++|||++.|..|+.++..|........
T Consensus 316 ~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~- 394 (542)
T COG1111 316 GGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR- 394 (542)
T ss_pred cchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce-
Confidence 000011 1223566777666666666655532211000
Q ss_pred ccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEe
Q 000114 1604 QKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVM 1683 (2158)
Q Consensus 1604 ~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~ 1683 (2158)
..+.+.+-.-+..||++.+++.+++.|++|..+|||||++.+.|+|+|.+.+||
T Consensus 395 -------------------------~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVi- 448 (542)
T COG1111 395 -------------------------VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVI- 448 (542)
T ss_pred -------------------------eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEE-
Confidence 011122222344789999999999999999999999999999999999999999
Q ss_pred cceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC
Q 000114 1684 GTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1684 gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~ 1728 (2158)
+|++.. |...++||.||+|| ...|.+++|....
T Consensus 449 ---fYEpvp------SeIR~IQR~GRTGR---~r~Grv~vLvt~g 481 (542)
T COG1111 449 ---FYEPVP------SEIRSIQRKGRTGR---KRKGRVVVLVTEG 481 (542)
T ss_pred ---EecCCc------HHHHHHHhhCcccc---CCCCeEEEEEecC
Confidence 666543 68889999999999 5799999988877
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-28 Score=327.29 Aligned_cols=448 Identities=14% Similarity=0.167 Sum_probs=290.8
Q ss_pred CCCCCHHHH--HHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000114 1339 FKHFNPIQT--QVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2158)
Q Consensus 1339 f~~~~~iQ~--q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~ 1416 (2158)
|..--|+.. +.|...+.+++.++|+|+||||||.. +|.+-.-......+ ++++..|.|--|...+.++.+.++.
T Consensus 62 ~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~~~~~~--~I~~tQPRRlAA~svA~RvA~elg~ 137 (1283)
T TIGR01967 62 YPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELGRGSHG--LIGHTQPRRLAARTVAQRIAEELGT 137 (1283)
T ss_pred CCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcCCCCCc--eEecCCccHHHHHHHHHHHHHHhCC
Confidence 333344443 44445556677899999999999985 45442221111223 7888999999999999999988876
Q ss_pred CCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccc-ccCCCCChHHHHHHHHHHHH
Q 000114 1417 GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL-IGGQGGPVLEVIVSRMRYIA 1495 (2158)
Q Consensus 1417 ~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~-l~~~~g~~~e~~isrl~~i~ 1495 (2158)
..|..|+.-.. .+.+.-.+++|+++||+.+...+.. ...+.++++|||||||. ..+. ..++..++.+.
T Consensus 138 ~lG~~VGY~vR---~~~~~s~~T~I~~~TdGiLLr~l~~---d~~L~~~~~IIIDEaHERsL~~-----D~LL~lLk~il 206 (1283)
T TIGR01967 138 PLGEKVGYKVR---FHDQVSSNTLVKLMTDGILLAETQQ---DRFLSRYDTIIIDEAHERSLNI-----DFLLGYLKQLL 206 (1283)
T ss_pred CcceEEeeEEc---CCcccCCCceeeeccccHHHHHhhh---CcccccCcEEEEcCcchhhccc-----hhHHHHHHHHH
Confidence 55666654221 1222224668999999998765543 45689999999999993 3321 22334444444
Q ss_pred hhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccch---HHHHHhcChHHHHHHHHhH-
Q 000114 1496 SQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF---EARMQAMTKPTFTAIVQHA- 1571 (2158)
Q Consensus 1496 ~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~---~~~~~~~~k~~~~~i~~~~- 1571 (2158)
.. .++.|+|+||||+ +.+.++++++..+ ++.... |..|+++.+........ ..... .....+....
T Consensus 207 ~~-rpdLKlIlmSATl-d~~~fa~~F~~ap--vI~V~G--r~~PVev~Y~~~~~~~~~~~~~~~~----~i~~~I~~l~~ 276 (1283)
T TIGR01967 207 PR-RPDLKIIITSATI-DPERFSRHFNNAP--IIEVSG--RTYPVEVRYRPLVEEQEDDDLDQLE----AILDAVDELFA 276 (1283)
T ss_pred hh-CCCCeEEEEeCCc-CHHHHHHHhcCCC--EEEECC--CcccceeEEecccccccchhhhHHH----HHHHHHHHHHh
Confidence 33 3578999999999 5678999887533 343333 34445554433221110 01111 1112222111
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
...+.+|||+|++++++.++..|..... -...|..+||+|+.++|..+
T Consensus 277 ~~~GdILVFLpg~~EI~~l~~~L~~~~~--------------------------------~~~~VlpLhg~Ls~~eQ~~v 324 (1283)
T TIGR01967 277 EGPGDILIFLPGEREIRDAAEILRKRNL--------------------------------RHTEILPLYARLSNKEQQRV 324 (1283)
T ss_pred hCCCCEEEeCCCHHHHHHHHHHHHhcCC--------------------------------CCcEEEeccCCCCHHHHHHH
Confidence 2457899999999999999877643110 01237889999999999999
Q ss_pred HHHHHcCCceEEEecCccccccCCCccEEEEe-c---ceeecCCCCcC----cCCCHHHHHHhhccCCCCCCCCceEEEE
Q 000114 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVM-G---TQYYDGQENAH----TDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2158)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~-g---t~~yd~~~~~~----~~~s~~~~lQr~GRaGR~g~d~~G~~ii 1723 (2158)
++.+ +..+|||||+++++|||+|++.+||. | ...|+++.+.. .+.|..+|.||+|||||.| .|.||.
T Consensus 325 f~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyR 399 (1283)
T TIGR01967 325 FQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIR 399 (1283)
T ss_pred hCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEE
Confidence 7654 34799999999999999999999993 2 34577665432 4567899999999999975 999999
Q ss_pred EecCChHHHHHHHhhCCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccHHHH
Q 000114 1724 LCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDH 1803 (2158)
Q Consensus 1724 l~~~~~~~~~~k~l~~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~~~~ 1803 (2158)
+++......... ...|+...++|...+.. +..-.+.+..+ |. +...|+
T Consensus 400 Lyte~~~~~~~~-~~~PEIlR~~L~~viL~-----l~~lg~~di~~--------f~---fldpP~--------------- 447 (1283)
T TIGR01967 400 LYSEEDFNSRPE-FTDPEILRTNLASVILQ-----MLALRLGDIAA--------FP---FIEAPD--------------- 447 (1283)
T ss_pred ecCHHHHHhhhh-ccCcccccccHHHHHHH-----HHhcCCCCccc--------cc---CCCCCC---------------
Confidence 998654322211 23677777777554442 22212222211 11 123343
Q ss_pred HHHHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHhcCccccCCCCCcch
Q 000114 1804 LSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGE 1883 (2158)
Q Consensus 1804 l~~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E 1883 (2158)
.+.++.++..|...|+|..+. .....|++|+.+|.++++|...+++..+....+ ...++.|.|.-+ ..+...|+.+
T Consensus 448 -~~~i~~A~~~L~~LGAld~~~-~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gc-l~e~l~IaA~Ls-~~dp~~~p~~ 523 (1283)
T TIGR01967 448 -PRAIRDGFRLLEELGALDDDE-AEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGC-LQEVLIIASALS-IQDPRERPME 523 (1283)
T ss_pred -HHHHHHHHHHHHHCCCCCCCC-CCccccHHHHHHhhcCCChHHHHHHHHhhhcCC-HHHHHHHHHHHc-CCCcCCCcch
Confidence 268899999999999995321 125788999999999999999999998766554 455665555433 3454445554
Q ss_pred H
Q 000114 1884 E 1884 (2158)
Q Consensus 1884 ~ 1884 (2158)
.
T Consensus 524 ~ 524 (1283)
T TIGR01967 524 K 524 (1283)
T ss_pred h
Confidence 4
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=299.53 Aligned_cols=441 Identities=16% Similarity=0.189 Sum_probs=300.7
Q ss_pred HHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcc-cCCcEEEEE
Q 000114 506 SALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MYDVKVREL 584 (2158)
Q Consensus 506 ~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~-~~gi~v~~l 584 (2158)
.+++.++.++|.|+||||||......+.+.-.. ...+|.+..|+|--|..++++...-.+ .+|-.|+..
T Consensus 61 ~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~----------~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~ 130 (674)
T KOG0922|consen 61 YAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA----------SSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYT 130 (674)
T ss_pred HHHHHCCEEEEEcCCCCCccccHhHHHHhcccc----------cCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeE
Confidence 346778889999999999998754444333211 122599999999999999888876432 334444332
Q ss_pred eCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEE
Q 000114 585 SGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLV 664 (2158)
Q Consensus 585 ~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv 664 (2158)
. .+++.....+.|.+.|.+ ++.|.......++.+++||+|||| +|.-....++.-+.+ +-...++.|+|
T Consensus 131 I---RFed~ts~~TrikymTDG---~LLRE~l~Dp~LskYsvIIlDEAH----ERsl~TDiLlGlLKk-i~~~R~~LklI 199 (674)
T KOG0922|consen 131 I---RFEDSTSKDTRIKYMTDG---MLLREILKDPLLSKYSVIILDEAH----ERSLHTDILLGLLKK-ILKKRPDLKLI 199 (674)
T ss_pred E---EecccCCCceeEEEecch---HHHHHHhcCCccccccEEEEechh----hhhhHHHHHHHHHHH-HHhcCCCceEE
Confidence 2 223333347899999999 677777666889999999999999 454444444443333 33456789999
Q ss_pred EEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChH
Q 000114 665 GLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRK 744 (2158)
Q Consensus 665 ~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~ 744 (2158)
.+|||+ |.+.+..|+.. .+++...+...|| +..+...+.. +-....-..+. .+....+.+.+|||.+.+.
T Consensus 200 imSATl-da~kfS~yF~~---a~i~~i~GR~fPV--ei~y~~~p~~---dYv~a~~~tv~-~Ih~~E~~GDILvFLtGqe 269 (674)
T KOG0922|consen 200 IMSATL-DAEKFSEYFNN---APILTIPGRTFPV--EILYLKEPTA---DYVDAALITVI-QIHLTEPPGDILVFLTGQE 269 (674)
T ss_pred EEeeee-cHHHHHHHhcC---CceEeecCCCCce--eEEeccCCch---hhHHHHHHHHH-HHHccCCCCCEEEEeCCHH
Confidence 999998 68889998875 3456665555554 4333321111 11111111112 2333355779999999999
Q ss_pred HHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEE
Q 000114 745 ETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVL 824 (2158)
Q Consensus 745 ~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VL 824 (2158)
+.+.++..|.+........ .+.-+...||.|+.+++..|++.-..|..+|+
T Consensus 270 EIe~~~~~l~e~~~~~~~~-----------------------------~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvI 320 (674)
T KOG0922|consen 270 EIEAACELLRERAKSLPED-----------------------------CPELILPLYGALPSEEQSRVFDPAPPGKRKVI 320 (674)
T ss_pred HHHHHHHHHHHHhhhcccc-----------------------------CcceeeeecccCCHHHhhccccCCCCCcceEE
Confidence 9999999998764221100 11124556999999999999999999999999
Q ss_pred EechhhhhccCCCceEEEEec----ccccCCCCCc----cccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHH
Q 000114 825 VSTATLAWGVNLPAHTVIIKG----TQIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLS 896 (2158)
Q Consensus 825 VaT~tla~GVdlP~v~vVI~~----~~~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ 896 (2158)
+||++++..|.+|++.+||+. ...|+|..|. ..++|.++..||.|||||.| .|+|+.+++..+ |.+
T Consensus 321 lsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~---pGkcyRLYte~~---~~~ 394 (674)
T KOG0922|consen 321 LSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG---PGKCYRLYTESA---YDK 394 (674)
T ss_pred EEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC---CceEEEeeeHHH---Hhh
Confidence 999999999999999999997 3568888772 46799999999999999975 799999999765 355
Q ss_pred hhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHHH
Q 000114 897 LMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAA 976 (2158)
Q Consensus 897 ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~ 976 (2158)
+..++.|-... ..|...+..-.++| ..||.-+... ..+-.+.+..|+
T Consensus 395 ~~~~~~PEI~R--~~Ls~~vL~Lkalg---------------------i~d~l~F~f~----------d~P~~~~l~~AL 441 (674)
T KOG0922|consen 395 MPLQTVPEIQR--VNLSSAVLQLKALG---------------------INDPLRFPFI----------DPPPPEALEEAL 441 (674)
T ss_pred cccCCCCceee--echHHHHHHHHhcC---------------------CCCcccCCCC----------CCCChHHHHHHH
Confidence 55555552111 11222111111111 1223222211 111235678999
Q ss_pred HHHhHCCCccccccCCccccCh-HHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHH
Q 000114 977 TILDRNNLVKYDRKSGYFQVTD-LGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMEL 1052 (2158)
Q Consensus 977 ~~L~~~~~i~~~~~~~~~~~T~-lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r~~e~~~l 1052 (2158)
..|...|.|+.+ | .+|+ +|+.||.+++.|...++...+-+-+|+ .+++.+.|+-+ -.++..|+.++..-
T Consensus 442 ~~L~~lgald~~---g--~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~-~e~l~i~a~Ls-v~~~f~~p~~~~~~ 511 (674)
T KOG0922|consen 442 EELYSLGALDDR---G--KLTSPLGRQMAELPLEPHLSKMLLKSSELGCS-EEILTIAAMLS-VQSVFSRPKDKKAE 511 (674)
T ss_pred HHHHhcCcccCc---C--CcCchHHhhhhhcCCCcchhhhhhhccccCCc-chhhhheeeee-ccceecCccchhhh
Confidence 999999999832 4 4455 999999999999999999887777766 56777776655 56777777665544
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=310.97 Aligned_cols=328 Identities=15% Similarity=0.111 Sum_probs=212.9
Q ss_pred HHHHHHHHHHhcCCCcEEEEccCCchhHHH---------HHHHHHHHHHhhc-CCCceEEEEEcccHHHHHHHHHHHHHH
Q 000114 1344 PIQTQVFTVLYNTDDNVLVAAPTGSGKTIC---------SEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIK 1413 (2158)
Q Consensus 1344 ~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~---------a~l~il~~l~~~~-~~~~~~~v~IaP~raLa~q~~~~~~~~ 1413 (2158)
.+|.++++.+.+++ ++|+.|+||||||.+ |+++.+..+.... .....++++++|||+||.|+..++.+.
T Consensus 167 ~iQ~qil~~i~~gk-dvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 167 DVQLKIFEAWISRK-PVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHhCC-CEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 48999999998755 599999999999987 3344444432211 112238999999999999999998865
Q ss_pred hcC--CCCcEEEEEcCCcchh--hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHH
Q 000114 1414 FGQ--GLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVS 1489 (2158)
Q Consensus 1414 f~~--~~g~~v~~ltG~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~is 1489 (2158)
.+. ..|..+....|+.+.. .......+|+|+|+.. ....++++++||+||||..... +..+ +.
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L---------~l~~L~~v~~VVIDEaHEr~~~-~Dll---L~ 312 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL---------TLNKLFDYGTVIIDEVHEHDQI-GDII---IA 312 (675)
T ss_pred hCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc---------cccccccCCEEEccccccCccc-hhHH---HH
Confidence 542 2467788888887643 1223356899999752 1124788999999999987543 3222 22
Q ss_pred HHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEeccccc-c-hHHHHHhcChHHHHH
Q 000114 1490 RMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIT-N-FEARMQAMTKPTFTA 1566 (2158)
Q Consensus 1490 rl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~-~-~~~~~~~~~k~~~~~ 1566 (2158)
.++.+. +...|+++||||++. .+.+.+|++... .+... .....|++......... . .........+.....
T Consensus 313 llk~~~---~~~rq~ILmSATl~~dv~~l~~~~~~p~--~I~I~-grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~ 386 (675)
T PHA02653 313 VARKHI---DKIRSLFLMTATLEDDRDRIKEFFPNPA--FVHIP-GGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTA 386 (675)
T ss_pred HHHHhh---hhcCEEEEEccCCcHhHHHHHHHhcCCc--EEEeC-CCcCCCeEEEEeecCcccccchhhhHHHHHHHHHH
Confidence 222221 223489999999974 567778886332 23322 11123444443221110 0 000000001112222
Q ss_pred HHHhH-hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCH
Q 000114 1567 IVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (2158)
Q Consensus 1567 i~~~~-~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~ 1645 (2158)
+.... ..++++||||+++++|+.++..|.... .+..+..+||+|++
T Consensus 387 L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~---------------------------------~~~~v~~LHG~Lsq 433 (675)
T PHA02653 387 LKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL---------------------------------PIYDFYIIHGKVPN 433 (675)
T ss_pred HHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc---------------------------------CCceEEeccCCcCH
Confidence 22221 235689999999999999886663210 13458899999997
Q ss_pred HHHHHHHHHH-HcCCceEEEecCccccccCCCccEEEEecceeecC--CCCcCcCCCHHHHHHhhccCCCCCCCCceEEE
Q 000114 1646 TDQEVVSALF-EAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDG--QENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2158)
Q Consensus 1646 ~dR~~v~~~F-~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~--~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~i 1722 (2158)
. ..+++.| ++|+.+|||||+++++|||+|++.+||-....+.+ ..+...+.|..+|.||+|||||. ..|.|+
T Consensus 434 ~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~ 508 (675)
T PHA02653 434 I--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYV 508 (675)
T ss_pred H--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEE
Confidence 5 4555666 78999999999999999999999999932211111 12234567899999999999996 589999
Q ss_pred EEecCCh
Q 000114 1723 ILCHAPR 1729 (2158)
Q Consensus 1723 il~~~~~ 1729 (2158)
.+++...
T Consensus 509 rLyt~~~ 515 (675)
T PHA02653 509 YFYDLDL 515 (675)
T ss_pred EEECHHH
Confidence 9997754
|
|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=324.59 Aligned_cols=330 Identities=21% Similarity=0.306 Sum_probs=257.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
|.+.|+|-|.+|+.+++.|.+ ++|.+|||+||++||+||++ -.++ .+|+|.|..+|+.++...+..
T Consensus 261 g~~~FR~~Q~eaI~~~l~Gkd-~fvlmpTG~GKSLCYQlPA~------l~~g--itvVISPL~SLm~DQv~~L~~----- 326 (941)
T KOG0351|consen 261 GHKGFRPNQLEAINATLSGKD-CFVLMPTGGGKSLCYQLPAL------LLGG--VTVVISPLISLMQDQVTHLSK----- 326 (941)
T ss_pred ccccCChhHHHHHHHHHcCCc-eEEEeecCCceeeEeecccc------ccCC--ceEEeccHHHHHHHHHHhhhh-----
Confidence 589999999999999988777 99999999999999999987 2244 889999999999998886641
Q ss_pred CCcEEEEEcCCcchh-----hhcccC----CcEEEeCHHHHHHHHhhhhccccccc---eeEEEecccccccCCCCChHH
Q 000114 1418 LGMRVVELTGETAMD-----LKLLEK----GQIIISTPEKWDALSRRWKQRKYVQQ---VSLFIIDELHLIGGQGGPVLE 1485 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~-----~~~l~~----~~IIV~TPe~l~~l~r~~~~~~~l~~---v~llIiDEaH~l~~~~g~~~e 1485 (2158)
.++....++|+.... .+.+.. .+|+..|||++...-+.......+.. +.++||||||++. .+|+.|+
T Consensus 327 ~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVS-qWgHdFR 405 (941)
T KOG0351|consen 327 KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVS-QWGHDFR 405 (941)
T ss_pred cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhh-hhccccc
Confidence 368888888877653 222332 38999999998653332222233444 9999999999996 5679999
Q ss_pred HHHHHHHHHHhhcCCCceEEEeccCCCC--hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHH
Q 000114 1486 VIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPT 1563 (2158)
Q Consensus 1486 ~~isrl~~i~~~~~~~~riV~lSATl~n--~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~ 1563 (2158)
.-+.++..+....+. +.+++||||... .+|+.+-|+.....++. .++.+..+...+..-..... ....
T Consensus 406 p~Yk~l~~l~~~~~~-vP~iALTATAT~~v~~DIi~~L~l~~~~~~~--~sfnR~NL~yeV~~k~~~~~-------~~~~ 475 (941)
T KOG0351|consen 406 PSYKRLGLLRIRFPG-VPFIALTATATERVREDVIRSLGLRNPELFK--SSFNRPNLKYEVSPKTDKDA-------LLDI 475 (941)
T ss_pred HHHHHHHHHHhhCCC-CCeEEeehhccHHHHHHHHHHhCCCCcceec--ccCCCCCceEEEEeccCccc-------hHHH
Confidence 999999888776654 899999999854 57999999987665443 33333344444433221110 0111
Q ss_pred HHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCC
Q 000114 1564 FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGL 1643 (2158)
Q Consensus 1564 ~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l 1643 (2158)
...+... .+..++||||.+|+.|+.++..|.. .+...++||+||
T Consensus 476 ~~~~~~~-~~~~s~IIYC~sr~~ce~vs~~L~~-----------------------------------~~~~a~~YHAGl 519 (941)
T KOG0351|consen 476 LEESKLR-HPDQSGIIYCLSRKECEQVSAVLRS-----------------------------------LGKSAAFYHAGL 519 (941)
T ss_pred HHHhhhc-CCCCCeEEEeCCcchHHHHHHHHHH-----------------------------------hchhhHhhhcCC
Confidence 2222223 6788999999999999999977633 234578999999
Q ss_pred CHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEE
Q 000114 1644 NKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2158)
Q Consensus 1644 ~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~ii 1723 (2158)
+..+|..|.+.|..++++|+|||=++++|||.|+++.|| |+..|-++..|.|-+|||||.| ....|++
T Consensus 520 ~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~Vi----------H~~lPks~E~YYQE~GRAGRDG--~~s~C~l 587 (941)
T KOG0351|consen 520 PPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVI----------HYSLPKSFEGYYQEAGRAGRDG--LPSSCVL 587 (941)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEE----------ECCCchhHHHHHHhccccCcCC--CcceeEE
Confidence 999999999999999999999999999999999999999 8999999999999999999987 6788999
Q ss_pred EecCChHHHHHHHhhCC
Q 000114 1724 LCHAPRKEYYKKFLYDA 1740 (2158)
Q Consensus 1724 l~~~~~~~~~~k~l~~~ 1740 (2158)
|+...+....+.++...
T Consensus 588 ~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 588 LYGYADISELRRLLTSG 604 (941)
T ss_pred ecchhHHHHHHHHHHcc
Confidence 99888777777777765
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.8e-28 Score=313.17 Aligned_cols=310 Identities=15% Similarity=0.177 Sum_probs=203.1
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhh
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~ 573 (2158)
..|+++|.++++.++.++ +.+++||||+|||.++...+...+... ..++||++||++|+.|+.++|.++
T Consensus 113 ~~~r~~Q~~av~~~l~~~-~~il~apTGsGKT~i~~~l~~~~~~~~----------~~~vLilvpt~eL~~Q~~~~l~~~ 181 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNN-RRLLNLPTSAGKSLIQYLLSRYYLENY----------EGKVLIIVPTTSLVTQMIDDFVDY 181 (501)
T ss_pred CCCCHHHHHHHHHHHhcC-ceEEEeCCCCCHHHHHHHHHHHHHhcC----------CCeEEEEECcHHHHHHHHHHHHHh
Confidence 589999999999988764 489999999999998765433223221 238999999999999999999986
Q ss_pred cccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHH
Q 000114 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653 (2158)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~ 653 (2158)
+......+..+.|+.... ...+|+|+||+++. +.. ..+++++++||+||||++.. ..++.++..+
T Consensus 182 ~~~~~~~~~~i~~g~~~~----~~~~I~VaT~qsl~---~~~--~~~~~~~~~iIvDEaH~~~~---~~~~~il~~~--- 246 (501)
T PHA02558 182 RLFPREAMHKIYSGTAKD----TDAPIVVSTWQSAV---KQP--KEWFDQFGMVIVDECHLFTG---KSLTSIITKL--- 246 (501)
T ss_pred ccccccceeEEecCcccC----CCCCEEEeeHHHHh---hch--hhhccccCEEEEEchhcccc---hhHHHHHHhh---
Confidence 543334454455544322 35789999999752 222 13567899999999999864 3355444432
Q ss_pred HhhccccccEEEEccccCChHH-H---HHHHhccccCceEEecC-----CcccccceeEEEee--ccC--------ChhH
Q 000114 654 IETTKEHIRLVGLSATLPNYED-V---ALFLRVNLEKGLFYFDN-----SYRPVPLSQQYIGI--QVK--------KPLQ 714 (2158)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~d-v---~~~l~~~~~~~~~~f~~-----~~rpv~l~~~~~~~--~~~--------~~~~ 714 (2158)
....+++|||||+++... . ..+++.. ...... .-..+++....+.. +.. ....
T Consensus 247 ----~~~~~~lGLTATp~~~~~~~~~~~~~fG~i----~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 318 (501)
T PHA02558 247 ----DNCKFKFGLTGSLRDGKANILQYVGLFGDI----FKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQE 318 (501)
T ss_pred ----hccceEEEEeccCCCccccHHHHHHhhCCc----eEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHH
Confidence 234678999999864221 1 1112110 000000 00001111111100 000 0000
Q ss_pred HHH------HhhHHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcc
Q 000114 715 RFQ------LMNDLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787 (2158)
Q Consensus 715 ~~~------~l~~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 787 (2158)
.+. .-+..+...+.... .+++++|||+++++++.+++.|...+.
T Consensus 319 ~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~----------------------------- 369 (501)
T PHA02558 319 EIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYD----------------------------- 369 (501)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCC-----------------------------
Confidence 000 01122222222222 357899999999999999998887542
Q ss_pred hhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEec-hhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHH
Q 000114 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST-ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ 866 (2158)
Q Consensus 788 ~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT-~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Q 866 (2158)
.+.++||+|+.++|..+++.|++|...||||| +++++|+|+|.+++||. ++|.+ |...|+|
T Consensus 370 --------~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl----~~p~~------s~~~~~Q 431 (501)
T PHA02558 370 --------KVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIF----AHPSK------SKIIVLQ 431 (501)
T ss_pred --------CEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEE----ecCCc------chhhhhh
Confidence 35677999999999999999999999999998 89999999999999997 56665 6778999
Q ss_pred hhcccCCCCCCCccEEEEE
Q 000114 867 MLGRAGRPQYDSYGEGIII 885 (2158)
Q Consensus 867 r~GRAGR~g~d~~G~~iil 885 (2158)
|+||+||++.+ +..++++
T Consensus 432 riGR~~R~~~~-K~~~~i~ 449 (501)
T PHA02558 432 SIGRVLRKHGS-KSIATVW 449 (501)
T ss_pred hhhccccCCCC-CceEEEE
Confidence 99999998643 3445554
|
|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-28 Score=304.12 Aligned_cols=343 Identities=24% Similarity=0.360 Sum_probs=222.5
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
++.-.|+.+|.+....|| .+|+||++|||+|||++|...|++++...+ ..|||++||++-|+.|+...|
T Consensus 58 p~~~~lR~YQ~eivq~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p---------~~KiVF~aP~~pLv~QQ~a~~ 126 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPAL--GKNTIIALPTGSGKTFIAAVIMKNHFEWRP---------KGKVVFLAPTRPLVNQQIACF 126 (746)
T ss_pred cCcccccHHHHHHhHHhh--cCCeEEEeecCCCccchHHHHHHHHHhcCC---------cceEEEeeCCchHHHHHHHHH
Confidence 455689999999999999 578999999999999999999999998763 359999999999999999888
Q ss_pred HhhcccCCcEEEEEeCCC-ccCH--hhhccccEEEcchhHH-HHHHhccCCCccccccceEEeecccccccCChhhHHHH
Q 000114 571 SNRLQMYDVKVRELSGDQ-TLTR--QQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESI 646 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~-~~~~--~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~i 646 (2158)
+..+.+ -.+....||. .... ......+|+|+||+.+ +.|.....+. ++.+.++||||||+-.. ...+..+
T Consensus 127 ~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~--ls~fs~iv~DE~Hra~k--n~~Y~~V 200 (746)
T KOG0354|consen 127 SIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDE--LSDFSLIVFDECHRTSK--NHPYNNI 200 (746)
T ss_pred hhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccc--cceEEEEEEcccccccc--cccHHHH
Confidence 877655 3444444553 3222 2356889999999987 4444443332 78899999999998643 2334444
Q ss_pred HHHHHHHHhhccccccEEEEccccCC-hHHHHHHHhc---cc--------------------------------------
Q 000114 647 VARTVRQIETTKEHIRLVGLSATLPN-YEDVALFLRV---NL-------------------------------------- 684 (2158)
Q Consensus 647 v~r~~~~~~~~~~~~riv~lSATlpn-~~dv~~~l~~---~~-------------------------------------- 684 (2158)
+...+.. .....||+|||||+++ .+.+...+.. .+
T Consensus 201 mr~~l~~---k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~ 277 (746)
T KOG0354|consen 201 MREYLDL---KNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGM 277 (746)
T ss_pred HHHHHHh---hhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHH
Confidence 4333322 2233499999999874 2222222110 00
Q ss_pred ----------cCceEEe---cCCcc--c----------ccceeE--EE---------------eec------------cC
Q 000114 685 ----------EKGLFYF---DNSYR--P----------VPLSQQ--YI---------------GIQ------------VK 710 (2158)
Q Consensus 685 ----------~~~~~~f---~~~~r--p----------v~l~~~--~~---------------~~~------------~~ 710 (2158)
..+++.. ...+. + .+-.++ +. ++. ..
T Consensus 278 ~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e 357 (746)
T KOG0354|consen 278 IIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEE 357 (746)
T ss_pred HHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccc
Confidence 0000000 00000 0 000000 00 000 00
Q ss_pred ChhHH--------------HHHhhHH----------------HHHHHHHH---hCCCeEEEEecChHHHHHHHHHHHHHh
Q 000114 711 KPLQR--------------FQLMNDL----------------CYEKVVAV---AGKHQVLIFVHSRKETAKTARAIRDTA 757 (2158)
Q Consensus 711 ~~~~~--------------~~~l~~~----------------~~~~i~~~---~~~~~vLVFv~sr~~~~~~a~~L~~~~ 757 (2158)
...++ ...|++. +.+.+.+. .+..++||||.+|..|..+-.+|....
T Consensus 358 ~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~ 437 (746)
T KOG0354|consen 358 VALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLH 437 (746)
T ss_pred cchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhh
Confidence 00000 0111110 11111222 235689999999999999999887521
Q ss_pred hcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCC
Q 000114 758 LENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP 837 (2158)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP 837 (2158)
....... .+++.|-+....||++.++.++++.|++|.++|||||++++.|+|+|
T Consensus 438 ~~~ir~~--------------------------~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ 491 (746)
T KOG0354|consen 438 ELGIKAE--------------------------IFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIG 491 (746)
T ss_pred hcccccc--------------------------eeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcc
Confidence 1000000 12223333334799999999999999999999999999999999999
Q ss_pred ceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHH
Q 000114 838 AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRY 893 (2158)
Q Consensus 838 ~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~ 893 (2158)
.+++||. ||..+ ++...+||.|| ||. +.|+++++++..+...
T Consensus 492 ec~lVIc----Yd~~s------npIrmIQrrGR-gRa---~ns~~vll~t~~~~~~ 533 (746)
T KOG0354|consen 492 ECNLVIC----YDYSS------NPIRMVQRRGR-GRA---RNSKCVLLTTGSEVIE 533 (746)
T ss_pred cccEEEE----ecCCc------cHHHHHHHhcc-ccc---cCCeEEEEEcchhHHH
Confidence 9999999 77766 78899999999 996 5799999998554433
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-28 Score=314.98 Aligned_cols=427 Identities=18% Similarity=0.207 Sum_probs=296.0
Q ss_pred HHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEE
Q 000114 503 VYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVR 582 (2158)
Q Consensus 503 ~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~ 582 (2158)
-|-.++..+..++|+||||||||...-..++..... .+.+|++..|.|--|..+++++.+.++ .+++
T Consensus 57 ~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~----------~~g~I~~tQPRRlAArsvA~RvAeel~---~~~G 123 (845)
T COG1643 57 EILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG----------IAGKIGCTQPRRLAARSVAERVAEELG---EKLG 123 (845)
T ss_pred HHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc----------cCCeEEecCchHHHHHHHHHHHHHHhC---CCcC
Confidence 344567777889999999999999887777776541 234899999999888999988887654 3344
Q ss_pred EEeC-CCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccc
Q 000114 583 ELSG-DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHI 661 (2158)
Q Consensus 583 ~l~G-d~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~ 661 (2158)
...| ...++......+.|-++|.+ +++|.......++.+++|||||+| +|.-...-++.-+........++.
T Consensus 124 ~~VGY~iRfe~~~s~~Trik~mTdG---iLlrei~~D~~Ls~ys~vIiDEaH----ERSl~tDilLgllk~~~~~rr~DL 196 (845)
T COG1643 124 ETVGYSIRFESKVSPRTRIKVMTDG---ILLREIQNDPLLSGYSVVIIDEAH----ERSLNTDILLGLLKDLLARRRDDL 196 (845)
T ss_pred ceeeEEEEeeccCCCCceeEEeccH---HHHHHHhhCcccccCCEEEEcchh----hhhHHHHHHHHHHHHHHhhcCCCc
Confidence 3333 12233344457999999999 667766666789999999999999 566666667776666566666689
Q ss_pred cEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHh--CCCeEEEE
Q 000114 662 RLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVA--GKHQVLIF 739 (2158)
Q Consensus 662 riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~--~~~~vLVF 739 (2158)
|+|.||||+ |.+.++.+++. .+++.....-.|| +.+|........ .....+. ..+..+. +.+.+|||
T Consensus 197 KiIimSATl-d~~rfs~~f~~---apvi~i~GR~fPV--ei~Y~~~~~~d~-~l~~ai~----~~v~~~~~~~~GdILvF 265 (845)
T COG1643 197 KLIIMSATL-DAERFSAYFGN---APVIEIEGRTYPV--EIRYLPEAEADY-ILLDAIV----AAVDIHLREGSGSILVF 265 (845)
T ss_pred eEEEEeccc-CHHHHHHHcCC---CCEEEecCCccce--EEEecCCCCcch-hHHHHHH----HHHHHhccCCCCCEEEE
Confidence 999999998 67889999874 3455555544444 444422111111 1122222 2232222 26899999
Q ss_pred ecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCC
Q 000114 740 VHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG 819 (2158)
Q Consensus 740 v~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g 819 (2158)
.+...+...+++.|.+..... ..-|...||.|+.+++..+++--..|
T Consensus 266 LpG~~EI~~~~~~L~~~~l~~---------------------------------~~~i~PLy~~L~~~eQ~rvF~p~~~~ 312 (845)
T COG1643 266 LPGQREIERTAEWLEKAELGD---------------------------------DLEILPLYGALSAEEQVRVFEPAPGG 312 (845)
T ss_pred CCcHHHHHHHHHHHHhccccC---------------------------------CcEEeeccccCCHHHHHhhcCCCCCC
Confidence 999999999999998721110 11255679999999999999988888
Q ss_pred CceEEEechhhhhccCCCceEEEEecc----cccCCCCCc----cccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcH
Q 000114 820 HVQVLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKGA----WTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2158)
Q Consensus 820 ~i~VLVaT~tla~GVdlP~v~vVI~~~----~~yd~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~ 891 (2158)
..+|++||++++.++.+|++++||++. ..||+.+|- .+++|.++..||.|||||.+ .|.||-+++.++
T Consensus 313 ~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~---pGicyRLyse~~- 388 (845)
T COG1643 313 KRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG---PGICYRLYSEED- 388 (845)
T ss_pred cceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC---CceEEEecCHHH-
Confidence 888999999999999999999999973 468888772 36799999999999999975 799999999744
Q ss_pred HHHHHhhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHH
Q 000114 892 RYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADL 971 (2158)
Q Consensus 892 ~~y~~ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~l 971 (2158)
|..+...+.| +.+...|..-+... ..| .+..+|..+ +.+..+-...
T Consensus 389 --~~~~~~~t~P------EIlrtdLs~~vL~l--------~~~--------G~~~d~~~f----------~fld~P~~~~ 434 (845)
T COG1643 389 --FLAFPEFTLP------EILRTDLSGLVLQL--------KSL--------GIGQDIAPF----------PFLDPPPEAA 434 (845)
T ss_pred --HHhcccCCCh------hhhhcchHHHHHHH--------Hhc--------CCCCCcccC----------ccCCCCChHH
Confidence 3344444433 12222221110000 000 000122221 1222222356
Q ss_pred HHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCc
Q 000114 972 VHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSE 1037 (2158)
Q Consensus 972 i~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ 1037 (2158)
+..|+..|...|++..+ -.+|++|+.||.++++|+-+++....-...+. .+++.|.|+-+
T Consensus 435 i~~A~~~L~~LGAld~~-----g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~-~e~~~Ias~Ls 494 (845)
T COG1643 435 IQAALTLLQELGALDDS-----GKLTPLGKQMSLLPLDPRLARMLLTAPEGGCL-GEAATIASMLS 494 (845)
T ss_pred HHHHHHHHHHcCCcCCC-----CCCCHHHHHHHhCCCChHHHHHHHhccccCcH-HHHHHHHHhhc
Confidence 78899999999999754 25999999999999999999999887665553 44554544433
|
|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-28 Score=280.43 Aligned_cols=328 Identities=19% Similarity=0.233 Sum_probs=236.6
Q ss_pred hHHHHHhcCCCCC-CHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHH
Q 000114 1330 PLYEALYQGFKHF-NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2158)
Q Consensus 1330 ~~~~~l~~gf~~~-~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~ 1408 (2158)
+.++.+|. +..| ++.|.+|+.++..++..|.|++|||+||++||+||.|- .++ .+|+++|+.+|+.++.+
T Consensus 9 eaLKK~FG-h~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~------~~g--ITIV~SPLiALIkDQiD 79 (641)
T KOG0352|consen 9 EALKKLFG-HKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALV------HGG--ITIVISPLIALIKDQID 79 (641)
T ss_pred HHHHHHhC-chhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHH------hCC--eEEEehHHHHHHHHHHH
Confidence 34566665 6555 78999999999999988999999999999999999982 345 88999999999999999
Q ss_pred HHHHHhcCCCCcEEEEEcCCcchhh--------h-cccCCcEEEeCHHHHHH-----HHhhhhccccccceeEEEecccc
Q 000114 1409 DWEIKFGQGLGMRVVELTGETAMDL--------K-LLEKGQIIISTPEKWDA-----LSRRWKQRKYVQQVSLFIIDELH 1474 (2158)
Q Consensus 1409 ~~~~~f~~~~g~~v~~ltG~~~~~~--------~-~l~~~~IIV~TPe~l~~-----l~r~~~~~~~l~~v~llIiDEaH 1474 (2158)
.+. ++ .+.+..+.+..+... + .-.+..+++.|||.... ++... ..-..++++|+||||
T Consensus 80 HL~-~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L---~~r~~L~Y~vVDEAH 151 (641)
T KOG0352|consen 80 HLK-RL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGL---ANRDVLRYIVVDEAH 151 (641)
T ss_pred HHH-hc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHH---hhhceeeeEEechhh
Confidence 887 33 344544554433321 1 11233899999998643 22221 123568999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC--hHHHHHHhccCCCceEecCCCCcccccEEEEecccccch
Q 000114 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF 1552 (2158)
Q Consensus 1475 ~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n--~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~ 1552 (2158)
++. .+|+.++.-+-++..+.+.++ .+..|+|+||... -+|+...|........--.|.+|.. +..
T Consensus 152 CVS-QWGHDFRPDYL~LG~LRS~~~-~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~N-LFY---------- 218 (641)
T KOG0352|consen 152 CVS-QWGHDFRPDYLTLGSLRSVCP-GVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDN-LFY---------- 218 (641)
T ss_pred hHh-hhccccCcchhhhhhHHhhCC-CCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhh-hhH----------
Confidence 996 557777777777777776654 7889999999754 3677776665432211113333321 110
Q ss_pred HHHHHhcChHHHHHHH----HhHh-----------cCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccch
Q 000114 1553 EARMQAMTKPTFTAIV----QHAK-----------NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVE 1617 (2158)
Q Consensus 1553 ~~~~~~~~k~~~~~i~----~~~~-----------~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~ 1617 (2158)
...+.......+..+. ..+. ..+-.||||.||++|+.+|..|.
T Consensus 219 D~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~---------------------- 276 (641)
T KOG0352|consen 219 DNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLE---------------------- 276 (641)
T ss_pred HHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhh----------------------
Confidence 0011111111111111 1111 12448999999999999996552
Q ss_pred hhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcC
Q 000114 1618 PFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD 1697 (2158)
Q Consensus 1618 ~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~ 1697 (2158)
.-+.+...||+||...+|..|.+.+.+|++.||+||..+++|||-|++++|| |.+++
T Consensus 277 -------------~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFVi----------HW~~~ 333 (641)
T KOG0352|consen 277 -------------IAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVI----------HWSPS 333 (641)
T ss_pred -------------hcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEE----------ecCch
Confidence 2345567899999999999999999999999999999999999999999999 78888
Q ss_pred CCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHH
Q 000114 1698 YPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYK 1734 (2158)
Q Consensus 1698 ~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~ 1734 (2158)
-++.-|.|..|||||.| ..+.|=+++...+++.+.
T Consensus 334 qn~AgYYQESGRAGRDG--k~SyCRLYYsR~D~~~i~ 368 (641)
T KOG0352|consen 334 QNLAGYYQESGRAGRDG--KRSYCRLYYSRQDKNALN 368 (641)
T ss_pred hhhHHHHHhccccccCC--CccceeeeecccchHHHH
Confidence 89999999999999987 678899998888776655
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=285.50 Aligned_cols=476 Identities=17% Similarity=0.189 Sum_probs=318.3
Q ss_pred HHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCC
Q 000114 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYD 578 (2158)
Q Consensus 499 iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~g 578 (2158)
+-.+.+. +.+.+..++|.|.||||||......+... .....+.+|-+..|.|--|..++.++.+ .+|
T Consensus 269 ykdell~-av~e~QVLiI~GeTGSGKTTQiPQyL~Ea---------Gytk~gk~IgcTQPRRVAAmSVAaRVA~---EMg 335 (902)
T KOG0923|consen 269 YKDELLK-AVKEHQVLIIVGETGSGKTTQIPQYLYEA---------GYTKGGKKIGCTQPRRVAAMSVAARVAE---EMG 335 (902)
T ss_pred hHHHHHH-HHHhCcEEEEEcCCCCCccccccHHHHhc---------ccccCCceEeecCcchHHHHHHHHHHHH---HhC
Confidence 3344444 45667778999999999998654333222 1222455699999999999999988876 344
Q ss_pred cEEEEEeC-CCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhc
Q 000114 579 VKVRELSG-DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT 657 (2158)
Q Consensus 579 i~v~~l~G-d~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~ 657 (2158)
++.+--.| ...+.+.....+-|-++|.+ +|.|.......+..+++|||||||. |.-...-++.-+.. +...
T Consensus 336 vkLG~eVGYsIRFEdcTSekTvlKYMTDG---mLlREfL~epdLasYSViiiDEAHE----RTL~TDILfgLvKD-Iar~ 407 (902)
T KOG0923|consen 336 VKLGHEVGYSIRFEDCTSEKTVLKYMTDG---MLLREFLSEPDLASYSVIIVDEAHE----RTLHTDILFGLVKD-IARF 407 (902)
T ss_pred cccccccceEEEeccccCcceeeeeecch---hHHHHHhccccccceeEEEeehhhh----hhhhhhHHHHHHHH-HHhh
Confidence 44433333 11222333356788999999 5677766667888999999999993 33333323322222 2234
Q ss_pred cccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHH---HhCCC
Q 000114 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA---VAGKH 734 (2158)
Q Consensus 658 ~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~---~~~~~ 734 (2158)
.+.++++..|||+ +++.+..|+.. .++|.+.+.-.||.+ .|-..++.+ -+ +.++..++. ..+.+
T Consensus 408 RpdLKllIsSAT~-DAekFS~fFDd---apIF~iPGRRyPVdi--~Yt~~PEAd---Yl----dAai~tVlqIH~tqp~G 474 (902)
T KOG0923|consen 408 RPDLKLLISSATM-DAEKFSAFFDD---APIFRIPGRRYPVDI--FYTKAPEAD---YL----DAAIVTVLQIHLTQPLG 474 (902)
T ss_pred CCcceEEeecccc-CHHHHHHhccC---CcEEeccCcccceee--ecccCCchh---HH----HHHHhhheeeEeccCCc
Confidence 5899999999997 78899999874 567777766555543 322222211 11 122223322 22367
Q ss_pred eEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHH
Q 000114 735 QVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVED 814 (2158)
Q Consensus 735 ~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~ 814 (2158)
.+|||.....+.+.+...|.+....-+. ..+++ -|...||.|+.+.+..|++
T Consensus 475 DILVFltGQeEIEt~~e~l~~~~~~LGs-------------------------ki~el---iv~PiYaNLPselQakIFe 526 (902)
T KOG0923|consen 475 DILVFLTGQEEIETVKENLKERCRRLGS-------------------------KIREL---IVLPIYANLPSELQAKIFE 526 (902)
T ss_pred cEEEEeccHHHHHHHHHHHHHHHHHhcc-------------------------ccceE---EEeeccccCChHHHHhhcC
Confidence 8999999999988888887765322111 11111 1455699999999999999
Q ss_pred HHhCCCceEEEechhhhhccCCCceEEEEecc----cccCCCCC----ccccCCHHHHHHhhcccCCCCCCCccEEEEEc
Q 000114 815 LFGDGHVQVLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKG----AWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886 (2158)
Q Consensus 815 ~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~----~~yd~~~g----~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~ 886 (2158)
--..|..+|++||++++..+.++++.+||+.. ..|+|.+| ..+++|.+...||+|||||.| .|+|+.++
T Consensus 527 PtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRLY 603 (902)
T KOG0923|consen 527 PTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRLY 603 (902)
T ss_pred CCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEee
Confidence 99999999999999999999999999999853 56888887 347899999999999999986 79999999
Q ss_pred CCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHH
Q 000114 887 GHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGE 966 (2158)
Q Consensus 887 ~~~~~~~y~~ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~ 966 (2158)
+.......+..+ ..| .-...+|......--++| +.|.++| . + .+.|
T Consensus 604 t~~aY~~eLE~~--t~P--EIqRtnL~nvVL~LkSLG----I~Dl~~F---d-----------F--------mDpP---- 649 (902)
T KOG0923|consen 604 TAWAYEHELEEM--TVP--EIQRTNLGNVVLLLKSLG----IHDLIHF---D-----------F--------LDPP---- 649 (902)
T ss_pred chhhhhhhhccC--CCc--ceeeccchhHHHHHHhcC----cchhccc---c-----------c--------CCCC----
Confidence 865422222111 112 111223333333323333 2233222 1 1 1111
Q ss_pred HHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCCh
Q 000114 967 RRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQ 1046 (2158)
Q Consensus 967 ~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r~ 1046 (2158)
..+.+..|+..|...|.+.- ...+|.+||.||.|+++|...+++..+-+-.|+ .+++.|.++.+.+..++.|+
T Consensus 650 -p~etL~~aLE~LyaLGALn~-----~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs-~EiitiaamlS~~~svfyrp 722 (902)
T KOG0923|consen 650 -PTETLLKALEQLYALGALNH-----LGELTKLGRRMAEFPVDPMLSKMIVASEKYKCS-EEIITIAAMLSVGASVFYRP 722 (902)
T ss_pred -ChHHHHHHHHHHHHhhcccc-----ccchhhhhhhhhhcCCCHHHHhHHhhhccccch-HHHHHHHHHHhcCchheecc
Confidence 12456789999999999863 358999999999999999999999887777765 88999999999999999999
Q ss_pred hHHHHHHHHhhcCCCCCCCCCCChhHHHHHHHHHHHcCCCC
Q 000114 1047 DEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKL 1087 (2158)
Q Consensus 1047 ~e~~~l~~l~~~~~~~~~~~~~~~~~K~~~llq~~i~~~~~ 1087 (2158)
.++..-+.-..+ + +..+.+--.++|+-|-+...-
T Consensus 723 k~~~v~ad~a~~---~----f~~~~gDhi~~L~vyn~w~es 756 (902)
T KOG0923|consen 723 KDKQVHADNARK---N----FEEPVGDHIVLLNVYNQWKES 756 (902)
T ss_pred hhhhhhhhhhhh---c----cCCCCcchhhhhHHHHHHhhc
Confidence 987654432211 1 223344456777777765443
|
|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-27 Score=281.71 Aligned_cols=452 Identities=16% Similarity=0.180 Sum_probs=307.6
Q ss_pred HHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcc-cC
Q 000114 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ-MY 577 (2158)
Q Consensus 499 iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~-~~ 577 (2158)
.+.+.+. .+..++.++|.+.||||||......+++. ... ++..|.+..|.|.-|..+++++..-.+ .+
T Consensus 360 ~R~~ll~-~ir~n~vvvivgETGSGKTTQl~QyL~ed----GY~------~~GmIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 360 CRDQLLS-VIRENQVVVIVGETGSGKTTQLAQYLYED----GYA------DNGMIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred HHHHHHH-HHhhCcEEEEEecCCCCchhhhHHHHHhc----ccc------cCCeeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 4555555 34566779999999999998754443332 111 233788999999999999999886442 33
Q ss_pred CcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhc
Q 000114 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT 657 (2158)
Q Consensus 578 gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~ 657 (2158)
|-.|+.... +.+-....+.|-+.|.+ +|+|.......+.++++||+||||. |.-....++ -+++..-..
T Consensus 429 G~~VGYsIR---FEdvT~~~T~IkymTDG---iLLrEsL~d~~L~kYSviImDEAHE----RslNtDilf-Gllk~~lar 497 (1042)
T KOG0924|consen 429 GDTVGYSIR---FEDVTSEDTKIKYMTDG---ILLRESLKDRDLDKYSVIIMDEAHE----RSLNTDILF-GLLKKVLAR 497 (1042)
T ss_pred ccccceEEE---eeecCCCceeEEEeccc---hHHHHHhhhhhhhheeEEEechhhh----cccchHHHH-HHHHHHHHh
Confidence 444443222 11112246789999999 6777765556788899999999993 332233222 233333344
Q ss_pred cccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHH--HHHHhCCCe
Q 000114 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEK--VVAVAGKHQ 735 (2158)
Q Consensus 658 ~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~--i~~~~~~~~ 735 (2158)
..++++|..|||+ |.+.++.|++. .+.|+..+...||.+ .+...+... -... .+-+. +......+.
T Consensus 498 RrdlKliVtSATm-~a~kf~nfFgn---~p~f~IpGRTyPV~~--~~~k~p~eD---YVea---avkq~v~Ihl~~~~Gd 565 (1042)
T KOG0924|consen 498 RRDLKLIVTSATM-DAQKFSNFFGN---CPQFTIPGRTYPVEI--MYTKTPVED---YVEA---AVKQAVQIHLSGPPGD 565 (1042)
T ss_pred hccceEEEeeccc-cHHHHHHHhCC---CceeeecCCccceEE--EeccCchHH---HHHH---HHhhheEeeccCCCCC
Confidence 5689999999998 78999999983 345666665555543 222221111 1111 11111 112223578
Q ss_pred EEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHH
Q 000114 736 VLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDL 815 (2158)
Q Consensus 736 vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~ 815 (2158)
+|||...+..++-++..+.+.......-. .-...|...++.|+..-+..+++.
T Consensus 566 ilIfmtGqediE~t~~~i~~~l~ql~~~~---------------------------~~~L~vlpiYSQLp~dlQ~kiFq~ 618 (1042)
T KOG0924|consen 566 ILIFMTGQEDIECTCDIIKEKLEQLDSAP---------------------------TTDLAVLPIYSQLPADLQAKIFQK 618 (1042)
T ss_pred EEEecCCCcchhHHHHHHHHHHHhhhcCC---------------------------CCceEEEeehhhCchhhhhhhccc
Confidence 99999999999988888876543221110 012236667999999999999999
Q ss_pred HhCCCceEEEechhhhhccCCCceEEEEec----ccccCCCCC----ccccCCHHHHHHhhcccCCCCCCCccEEEEEcC
Q 000114 816 FGDGHVQVLVSTATLAWGVNLPAHTVIIKG----TQIYNPEKG----AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887 (2158)
Q Consensus 816 F~~g~i~VLVaT~tla~GVdlP~v~vVI~~----~~~yd~~~g----~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~ 887 (2158)
-..|..+++|||++++..+.+|++.+||+. -.+|++..| ...++|.+..-||.|||||.| .|.||.+++
T Consensus 619 a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~---pG~cYRlYT 695 (1042)
T KOG0924|consen 619 AEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG---PGTCYRLYT 695 (1042)
T ss_pred CCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC---Ccceeeehh
Confidence 999999999999999999999999999985 357888877 457899999999999999975 799999988
Q ss_pred CCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHH
Q 000114 888 HSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGER 967 (2158)
Q Consensus 888 ~~~~~~y~~ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~ 967 (2158)
... +..+++....| +..+.++..-+.+-....++|+.+| .| .+ + +
T Consensus 696 e~a--y~~eml~stvP------EIqRTNl~nvVLlLkslgV~dll~F---dF-------------------mD-~----P 740 (1042)
T KOG0924|consen 696 EDA--YKNEMLPSTVP------EIQRTNLSNVVLLLKSLGVDDLLKF---DF-------------------MD-P----P 740 (1042)
T ss_pred hhH--HHhhcccCCCc------hhhhcchhhHHHHHHhcChhhhhCC---Cc-------------------CC-C----C
Confidence 642 33345555444 2333344333333333344555443 11 11 1 1
Q ss_pred HHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChh
Q 000114 968 RADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQD 1047 (2158)
Q Consensus 968 ~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r~~ 1047 (2158)
..+.+.+++..|.-.|.|.. ...+|++|+.|+.|+++|...++++-+..-+|. .++|.|+|+-+- ..|+.|+.
T Consensus 741 ped~~~~sly~Lw~LGAl~~-----~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~-dEilsIvSmLSv-p~VF~rpk 813 (1042)
T KOG0924|consen 741 PEDNLLNSLYQLWTLGALDN-----TGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCS-DEILSIVSMLSV-PAVFYRPK 813 (1042)
T ss_pred HHHHHHHHHHHHHHhhcccc-----CCccchhhHHhhhCCCCchHHHHHHHHhccCcH-HHHHHHHHHhcc-cceeeccc
Confidence 22677889999999999974 348899999999999999999999876666654 788888887553 57889988
Q ss_pred HHHHHHHHh
Q 000114 1048 EKMELAKLL 1056 (2158)
Q Consensus 1048 e~~~l~~l~ 1056 (2158)
|+.+-+.+.
T Consensus 814 er~eead~a 822 (1042)
T KOG0924|consen 814 EREEEADAA 822 (1042)
T ss_pred cchhhhhhH
Confidence 888776654
|
|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-28 Score=275.86 Aligned_cols=332 Identities=18% Similarity=0.304 Sum_probs=233.9
Q ss_pred HhhcCCCCCC-CHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH
Q 000114 487 QPAFKGMTQL-NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (2158)
Q Consensus 487 ~~~f~g~~~l-~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q 565 (2158)
...| |+++| ++.|.+++..+..++.+|.||+|||+||++||.||.|-. .+ ..|++.|..||..+
T Consensus 12 KK~F-Gh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-------------~g-ITIV~SPLiALIkD 76 (641)
T KOG0352|consen 12 KKLF-GHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-------------GG-ITIVISPLIALIKD 76 (641)
T ss_pred HHHh-CchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-------------CC-eEEEehHHHHHHHH
Confidence 3444 55544 789999999999999999999999999999999998864 11 68999999999999
Q ss_pred HHHHHHhhcccCCcEEEEEeCCCccCHhh---------hccccEEEcchhHH--HHHHhccCCCccccccceEEeecccc
Q 000114 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQ---------IEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 566 ~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---------~~~~~IiV~TPekl--d~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
+.+.+.++ .+.+..+.+..+..++. .....++.-|||.. +.+.........-..++++|+||||+
T Consensus 77 QiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHC 152 (641)
T KOG0352|consen 77 QIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHC 152 (641)
T ss_pred HHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhh
Confidence 99998764 45666666655433221 23567999999974 11111111112234578999999999
Q ss_pred ccc---CChhhHHHHHHHHHHHHhhccccccEEEEccccCC--hHHHHHHHhccccCceEEec-CCcccccceeEEEeec
Q 000114 635 LHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFD-NSYRPVPLSQQYIGIQ 708 (2158)
Q Consensus 635 l~d---~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn--~~dv~~~l~~~~~~~~~~f~-~~~rpv~l~~~~~~~~ 708 (2158)
+.. ++.|.+-.+-+ ++...+++..|+|+||... .+|+..-|+.. .++-.|. +.||..- |+.+.
T Consensus 153 VSQWGHDFRPDYL~LG~-----LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~--~PVAiFkTP~FR~NL----FYD~~ 221 (641)
T KOG0352|consen 153 VSQWGHDFRPDYLTLGS-----LRSVCPGVPWVALTATANAKVQEDIAFQLKLR--NPVAIFKTPTFRDNL----FYDNH 221 (641)
T ss_pred HhhhccccCcchhhhhh-----HHhhCCCCceEEeecccChhHHHHHHHHHhhc--CcHHhccCcchhhhh----hHHHH
Confidence 854 45555543322 2345678999999999653 46676666643 3333332 3444311 11111
Q ss_pred cCCh-hHHHHHhhHHHHHHHH------HHhC--CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHh
Q 000114 709 VKKP-LQRFQLMNDLCYEKVV------AVAG--KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQS 779 (2158)
Q Consensus 709 ~~~~-~~~~~~l~~~~~~~i~------~~~~--~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~ 779 (2158)
.++. ..-+..+.+.+...+- +..+ .+..||||.||.+|+.+|-.|...|+...
T Consensus 222 ~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~------------------ 283 (641)
T KOG0352|consen 222 MKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAM------------------ 283 (641)
T ss_pred HHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchH------------------
Confidence 1110 1112222333222111 1111 45789999999999999999887765443
Q ss_pred hhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccC
Q 000114 780 HTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTEL 859 (2158)
Q Consensus 780 ~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~ 859 (2158)
.+|+||...+|.+|.+.+.+|++.|++||..+.+|||-|+|+.||+ ||++.
T Consensus 284 -------------------AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH----W~~~q------ 334 (641)
T KOG0352|consen 284 -------------------AYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH----WSPSQ------ 334 (641)
T ss_pred -------------------HHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEe----cCchh------
Confidence 2499999999999999999999999999999999999999999999 88887
Q ss_pred CHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHh
Q 000114 860 SPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSL 897 (2158)
Q Consensus 860 s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~l 897 (2158)
+.+-|.|-.|||||.| ....|-++++.++...+.-+
T Consensus 335 n~AgYYQESGRAGRDG--k~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 335 NLAGYYQESGRAGRDG--KRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred hhHHHHHhccccccCC--CccceeeeecccchHHHHHH
Confidence 8899999999999998 56889999999887765433
|
|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-26 Score=280.50 Aligned_cols=435 Identities=18% Similarity=0.195 Sum_probs=310.6
Q ss_pred cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh
Q 000114 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK 1434 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~ 1434 (2158)
+.+..++|.|+||||||.-.-..+.+.-.. ..| ++.+..|+|--|..+++++....+..+|-.|+.-.- .+..
T Consensus 64 e~nqvlIviGeTGsGKSTQipQyL~eaG~~--~~g--~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IR---Fed~ 136 (674)
T KOG0922|consen 64 EDNQVLIVIGETGSGKSTQIPQYLAEAGFA--SSG--KIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIR---FEDS 136 (674)
T ss_pred HHCCEEEEEcCCCCCccccHhHHHHhcccc--cCC--cEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEE---eccc
Confidence 557889999999999997654444433222 344 689999999999999999998887777777654332 1111
Q ss_pred cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh
Q 000114 1435 LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (2158)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~ 1514 (2158)
.-..+.|.+.|.+. ++|.......++++++||+||||. |.-.-..++.-++.+.+. .++.|+|.+|||+ |+
T Consensus 137 ts~~TrikymTDG~---LLRE~l~Dp~LskYsvIIlDEAHE----Rsl~TDiLlGlLKki~~~-R~~LklIimSATl-da 207 (674)
T KOG0922|consen 137 TSKDTRIKYMTDGM---LLREILKDPLLSKYSVIILDEAHE----RSLHTDILLGLLKKILKK-RPDLKLIIMSATL-DA 207 (674)
T ss_pred CCCceeEEEecchH---HHHHHhcCCccccccEEEEechhh----hhhHHHHHHHHHHHHHhc-CCCceEEEEeeee-cH
Confidence 22356899999997 455555678899999999999993 333445567777777654 4579999999998 89
Q ss_pred HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHH
Q 000114 1515 KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDL 1594 (2158)
Q Consensus 1515 ~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L 1594 (2158)
+.+.+|++.-+ ++... .|..|+++.+...+..++..... .....|... .+.+.+|||.+..++.+.++..|
T Consensus 208 ~kfS~yF~~a~--i~~i~--GR~fPVei~y~~~p~~dYv~a~~----~tv~~Ih~~-E~~GDILvFLtGqeEIe~~~~~l 278 (674)
T KOG0922|consen 208 EKFSEYFNNAP--ILTIP--GRTFPVEILYLKEPTADYVDAAL----ITVIQIHLT-EPPGDILVFLTGQEEIEAACELL 278 (674)
T ss_pred HHHHHHhcCCc--eEeec--CCCCceeEEeccCCchhhHHHHH----HHHHHHHcc-CCCCCEEEEeCCHHHHHHHHHHH
Confidence 99999998743 44443 46667777776665555544321 112223333 56678999999999999999888
Q ss_pred HhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccC
Q 000114 1595 MTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVP 1674 (2158)
Q Consensus 1595 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvd 1674 (2158)
.+........ ...-+..+||+|+.+++.+|++.-..|..+|++||++++.++.
T Consensus 279 ~e~~~~~~~~---------------------------~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlT 331 (674)
T KOG0922|consen 279 RERAKSLPED---------------------------CPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLT 331 (674)
T ss_pred HHHhhhcccc---------------------------CcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEE
Confidence 6543322111 1112678999999999999999999999999999999999999
Q ss_pred CCccEEEEec----ceeecCCCCcC----cCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhhC--CCccc
Q 000114 1675 LTAHLVVVMG----TQYYDGQENAH----TDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYD--AFPVE 1744 (2158)
Q Consensus 1675 lp~~~vVI~g----t~~yd~~~~~~----~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~~--~~piE 1744 (2158)
+|++.+||-. ...|+++.+.. +|.|..+..||.|||||. +.|+|+-++... .|.++... |+.-.
T Consensus 332 I~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt---~pGkcyRLYte~---~~~~~~~~~~PEI~R 405 (674)
T KOG0922|consen 332 IDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRT---GPGKCYRLYTES---AYDKMPLQTVPEIQR 405 (674)
T ss_pred ecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCC---CCceEEEeeeHH---HHhhcccCCCCceee
Confidence 9999999932 46788886654 578999999999999996 599999999874 45777654 55556
Q ss_pred cchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccHHHHHHHHHHHHHHHHHhCCCeeEc
Q 000114 1745 SHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIE 1824 (2158)
Q Consensus 1745 S~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~lve~~l~~L~~~~~I~~~ 1824 (2158)
++|...+. ...+-.+. |.+++.|+ ..|+ .+.+..||..|...|+|.
T Consensus 406 ~~Ls~~vL-----~Lkalgi~------d~l~F~f~-----d~P~----------------~~~l~~AL~~L~~lgald-- 451 (674)
T KOG0922|consen 406 VNLSSAVL-----QLKALGIN------DPLRFPFI-----DPPP----------------PEALEEALEELYSLGALD-- 451 (674)
T ss_pred echHHHHH-----HHHhcCCC------CcccCCCC-----CCCC----------------hHHHHHHHHHHHhcCccc--
Confidence 66643332 11122222 23444443 3333 267889999999999994
Q ss_pred CCCcccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHhcCccccCCCCCcchH
Q 000114 1825 EDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEE 1884 (2158)
Q Consensus 1825 ~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~ 1884 (2158)
+++.++.+ +|..+|.+++.+...+++..+-...+. .+++.+.|.-+ -.++-.|+.+.
T Consensus 452 ~~g~lt~p-~G~~ma~~Pl~p~lsk~ll~s~~~gc~-~e~l~i~a~Ls-v~~~f~~p~~~ 508 (674)
T KOG0922|consen 452 DRGKLTSP-LGRQMAELPLEPHLSKMLLKSSELGCS-EEILTIAAMLS-VQSVFSRPKDK 508 (674)
T ss_pred CcCCcCch-HHhhhhhcCCCcchhhhhhhccccCCc-chhhhheeeee-ccceecCccch
Confidence 44445443 999999999999999999986555554 67777776544 44555555443
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=301.61 Aligned_cols=313 Identities=18% Similarity=0.193 Sum_probs=202.4
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g 1419 (2158)
..|+++|.++++.++.+ ++.+++||||+|||+++...+ +.+.. ...+ +++|++||++|+.|+.++++ .|.....
T Consensus 113 ~~~r~~Q~~av~~~l~~-~~~il~apTGsGKT~i~~~l~-~~~~~-~~~~--~vLilvpt~eL~~Q~~~~l~-~~~~~~~ 186 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKN-NRRLLNLPTSAGKSLIQYLLS-RYYLE-NYEG--KVLIIVPTTSLVTQMIDDFV-DYRLFPR 186 (501)
T ss_pred CCCCHHHHHHHHHHHhc-CceEEEeCCCCCHHHHHHHHH-HHHHh-cCCC--eEEEEECcHHHHHHHHHHHH-Hhccccc
Confidence 58999999999999874 458999999999999875433 33222 2233 89999999999999999998 4543323
Q ss_pred cEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcC
Q 000114 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVE 1499 (2158)
Q Consensus 1420 ~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~ 1499 (2158)
..+..+.|+.... ..++|+|+||+++.... ...++++++||+||||++.+ ..++.++.. ++
T Consensus 187 ~~~~~i~~g~~~~----~~~~I~VaT~qsl~~~~-----~~~~~~~~~iIvDEaH~~~~---~~~~~il~~-------~~ 247 (501)
T PHA02558 187 EAMHKIYSGTAKD----TDAPIVVSTWQSAVKQP-----KEWFDQFGMVIVDECHLFTG---KSLTSIITK-------LD 247 (501)
T ss_pred cceeEEecCcccC----CCCCEEEeeHHHHhhch-----hhhccccCEEEEEchhcccc---hhHHHHHHh-------hh
Confidence 3444444443322 35799999999875432 22468899999999999864 234433332 23
Q ss_pred CCceEEEeccCCCChHH----HHHHhccCCCceEec---CCCCcccccEEEE--ecccc--------cchHHHHH--hcC
Q 000114 1500 NKIRIVALSTSLANAKD----LGEWIGATSHGLFNF---PPGVRPVPLEIHI--QGVDI--------TNFEARMQ--AMT 1560 (2158)
Q Consensus 1500 ~~~riV~lSATl~n~~d----l~~wl~~~~~~i~~f---~~~~rpv~l~~~i--~~~~~--------~~~~~~~~--~~~ 1560 (2158)
+..+++|||||+.+... +..++|.....+ .. .......+..+.. ..++. ..+..... ...
T Consensus 248 ~~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v-~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~ 326 (501)
T PHA02558 248 NCKFKFGLTGSLRDGKANILQYVGLFGDIFKPV-TTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSH 326 (501)
T ss_pred ccceEEEEeccCCCccccHHHHHHhhCCceEEe-cHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhcc
Confidence 45678999999975321 222333211000 00 0000001111110 00110 01111110 000
Q ss_pred ----hHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccE
Q 000114 1561 ----KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (2158)
Q Consensus 1561 ----k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv 1636 (2158)
......+......+++++|||.+.++|+.++..|.. .+..+
T Consensus 327 ~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~-----------------------------------~g~~v 371 (501)
T PHA02558 327 TKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKK-----------------------------------VYDKV 371 (501)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHH-----------------------------------cCCCE
Confidence 011111222224567899999999999888866532 23468
Q ss_pred EEecCCCCHHHHHHHHHHHHcCCceEEEec-CccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCC
Q 000114 1637 GYLHEGLNKTDQEVVSALFEAGKIKVCVMS-SSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLL 1715 (2158)
Q Consensus 1637 ~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT-~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~ 1715 (2158)
..+||+|+.++|..+++.|++|...||||| +.+++|+|+|.+.+||.. ..+.+...|+||+||++|.+
T Consensus 372 ~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~----------~p~~s~~~~~QriGR~~R~~- 440 (501)
T PHA02558 372 YYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFA----------HPSKSKIIVLQSIGRVLRKH- 440 (501)
T ss_pred EEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEe----------cCCcchhhhhhhhhccccCC-
Confidence 999999999999999999999999999998 899999999999999832 22336788999999999987
Q ss_pred CCceEEEEE
Q 000114 1716 DNSGKCVIL 1724 (2158)
Q Consensus 1716 d~~G~~iil 1724 (2158)
+++..|.++
T Consensus 441 ~~K~~~~i~ 449 (501)
T PHA02558 441 GSKSIATVW 449 (501)
T ss_pred CCCceEEEE
Confidence 444455555
|
|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-27 Score=291.64 Aligned_cols=366 Identities=26% Similarity=0.396 Sum_probs=237.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.|..||.+.+.. ...++.++|+|||.+|||.+-..+|-..+.... .--+||++|+++|+.|...++..++
T Consensus 511 ~Pd~WQ~elLDs-vDr~eSavIVAPTSaGKTfisfY~iEKVLResD---------~~VVIyvaPtKaLVnQvsa~VyaRF 580 (1330)
T KOG0949|consen 511 CPDEWQRELLDS-VDRNESAVIVAPTSAGKTFISFYAIEKVLRESD---------SDVVIYVAPTKALVNQVSANVYARF 580 (1330)
T ss_pred CCcHHHHHHhhh-hhcccceEEEeeccCCceeccHHHHHHHHhhcC---------CCEEEEecchHHHhhhhhHHHHHhh
Confidence 578899999885 466677999999999999998888877776542 3379999999999999999998888
Q ss_pred ccCC-cEEEEEeCCCccCHhh-hccccEEEcchhHHHHHHhc-cCCCccccccceEEeeccccccc-CChhhHHHHHHHH
Q 000114 575 QMYD-VKVRELSGDQTLTRQQ-IEETQIIVTTPEKWDIITRK-SGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVART 650 (2158)
Q Consensus 575 ~~~g-i~v~~l~Gd~~~~~~~-~~~~~IiV~TPekld~l~r~-~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~iv~r~ 650 (2158)
.... .+-..+.|+...+-+. .-+++|+||-||.++.+.-. .....+..+++++|+||+|+++. +.|..+|.++..
T Consensus 581 ~~~t~~rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l- 659 (1330)
T KOG0949|consen 581 DTKTFLRGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL- 659 (1330)
T ss_pred ccCccccchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh-
Confidence 4221 2223344444332221 12799999999999766654 22346889999999999999988 577777766543
Q ss_pred HHHHhhccccccEEEEccccCChHHHHHHHhccc-----cCceEEecCCc---------------------------ccc
Q 000114 651 VRQIETTKEHIRLVGLSATLPNYEDVALFLRVNL-----EKGLFYFDNSY---------------------------RPV 698 (2158)
Q Consensus 651 ~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~-----~~~~~~f~~~~---------------------------rpv 698 (2158)
..+.++++|||+.|+..+..|+.... ......+...+ |.+
T Consensus 660 --------i~CP~L~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~l~v~n~~~e~n~~yl~~~falgerai 731 (1330)
T KOG0949|consen 660 --------IPCPFLVLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELGLVVYNRMNEGNAYYLLKLFALGERAI 731 (1330)
T ss_pred --------cCCCeeEEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhcceeeccCCCCcchHHHHHHhhchhhc
Confidence 36889999999999999999997210 00011111100 000
Q ss_pred cc----------eeEEEeeccC----------------------------ChhHH--------HHHh-------------
Q 000114 699 PL----------SQQYIGIQVK----------------------------KPLQR--------FQLM------------- 719 (2158)
Q Consensus 699 ~l----------~~~~~~~~~~----------------------------~~~~~--------~~~l------------- 719 (2158)
.. ...+..+... ..... .+.+
T Consensus 732 ~~~~~~~~~s~dd~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k~~~e~~r~~~~l~~~f~e~s~~q~kik~~ 811 (1330)
T KOG0949|consen 732 IVSLRELSESEDDNVVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKKEVGEYGRHLLELFQGFIEDSLTQKQIKYV 811 (1330)
T ss_pred cchhhccccCCCCceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheechHHHHHHHHHHHHHHhhhcChHHHHHHHH
Confidence 00 0000000000 00000 0000
Q ss_pred h-------------------HHHHHHHHH----HhC--CCeEEEEecChHHHHHHHHHHHHHhhcccc------------
Q 000114 720 N-------------------DLCYEKVVA----VAG--KHQVLIFVHSRKETAKTARAIRDTALENDT------------ 762 (2158)
Q Consensus 720 ~-------------------~~~~~~i~~----~~~--~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~------------ 762 (2158)
+ +.+.+.+.. ... .-|+|+|-..|..|+++|..........+.
T Consensus 812 ~ki~~k~Vnkqle~~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcekla~kv~~~Le~~e~Ee~k~k~m~k~k 891 (1330)
T KOG0949|consen 812 YKLQTKEVNKQLESVVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEKLALKVHRQLESMEMEEKKDKLMEKMK 891 (1330)
T ss_pred HHhhhhhhhhHhhhcccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 0 000011111 111 348999999998888776654322110000
Q ss_pred ------------cccccc------------------------cCch-hHHHHHhhhhc--cCcchhhhhccCCeEEecCC
Q 000114 763 ------------LGRFLK------------------------EDSV-SREILQSHTDM--VKSNDLKDLLPYGFAIHHAG 803 (2158)
Q Consensus 763 ------------~~~~~~------------------------~~~~-~~~~l~~~~~~--~~~~~l~~ll~~gv~~hHag 803 (2158)
...+.+ .... ....+..+... -.+..+.+++-+|+|+||||
T Consensus 892 k~~~~a~~r~Kt~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~~~~~~g~~~~~~id~lyRGiG~HHag 971 (1330)
T KOG0949|consen 892 KEAKRARDREKTKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEEETKFIGNTDFEFIDMLYRGIGVHHAG 971 (1330)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhhhccccCCCcHHHHHHHHhcccccccc
Confidence 000000 0000 00001111111 13445677888999999999
Q ss_pred CCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEE
Q 000114 804 MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGI 883 (2158)
Q Consensus 804 l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~i 883 (2158)
|.+..|..||-+|+.|++.||+||.||+-|||.|..+||+-|+. -.+++..|.||+|||||.|||..|.++
T Consensus 972 lNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDs---------LQL~plny~QmaGRAGRRGFD~lGnV~ 1042 (1330)
T KOG0949|consen 972 LNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDS---------LQLDPLNYKQMAGRAGRRGFDTLGNVV 1042 (1330)
T ss_pred cchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccc---------cccCchhHHhhhccccccccccccceE
Confidence 99999999999999999999999999999999999999997542 346778899999999999999999988
Q ss_pred EEcCC
Q 000114 884 IITGH 888 (2158)
Q Consensus 884 il~~~ 888 (2158)
.+--+
T Consensus 1043 FmgiP 1047 (1330)
T KOG0949|consen 1043 FMGIP 1047 (1330)
T ss_pred EEeCc
Confidence 77544
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=309.16 Aligned_cols=370 Identities=21% Similarity=0.209 Sum_probs=240.2
Q ss_pred CCCHHHHHHHHHHHcC--CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 495 QLNRVQSRVYKSALSS--ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~--~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
.||+.|.++++.+..+ ..+++++||||||||.+|+.++...+..+ .+++|++|+++|+.|++++|++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-----------~~vLvLvPt~~L~~Q~~~~l~~ 212 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-----------KQALVLVPEIALTPQMLARFRA 212 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcC-----------CeEEEEeCcHHHHHHHHHHHHH
Confidence 5899999999999874 56799999999999999999888777542 3799999999999999999998
Q ss_pred hcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc--CChhhH
Q 000114 573 RLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD--NRGPVL 643 (2158)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d--~rg~~l 643 (2158)
.+ |.++..++|+.+...+. ....+|+|+|+..+ ...+.++++|||||+|.... ..++.+
T Consensus 213 ~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal---------~~p~~~l~liVvDEeh~~s~~~~~~p~y 280 (679)
T PRK05580 213 RF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL---------FLPFKNLGLIIVDEEHDSSYKQQEGPRY 280 (679)
T ss_pred Hh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh---------cccccCCCEEEEECCCccccccCcCCCC
Confidence 65 56899999987654332 23579999999853 13467899999999997643 234433
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccc-eeEEEeeccCChhHHHHHhhHH
Q 000114 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPL-SQQYIGIQVKKPLQRFQLMNDL 722 (2158)
Q Consensus 644 e~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l-~~~~~~~~~~~~~~~~~~l~~~ 722 (2158)
.. |-....+....+.++|++||| |..+........ ..........+...++ ...++.............+...
T Consensus 281 ~~---r~va~~ra~~~~~~~il~SAT-ps~~s~~~~~~g--~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~ 354 (679)
T PRK05580 281 HA---RDLAVVRAKLENIPVVLGSAT-PSLESLANAQQG--RYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPP 354 (679)
T ss_pred cH---HHHHHHHhhccCCCEEEEcCC-CCHHHHHHHhcc--ceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHH
Confidence 21 111111224568899999999 444433332211 1112222322211111 2233332221000000124455
Q ss_pred HHHHHHHHhC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHH----------HHhhhhccC------
Q 000114 723 CYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREI----------LQSHTDMVK------ 785 (2158)
Q Consensus 723 ~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~----------l~~~~~~~~------ 785 (2158)
+++.+.+... ++|+|||+|+|..+..+...-+.....+......+..+...... ....+..|.
T Consensus 355 l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~ 434 (679)
T PRK05580 355 LLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVP 434 (679)
T ss_pred HHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEE
Confidence 6666666655 56999999999877666555554333222111111000000000 000011110
Q ss_pred --------cchhhhhcc-CCeEEecCCCCH--HHHHHHHHHHhCCCceEEEechhhhhccCCCceEEE--EecccccCCC
Q 000114 786 --------SNDLKDLLP-YGFAIHHAGMTR--GDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI--IKGTQIYNPE 852 (2158)
Q Consensus 786 --------~~~l~~ll~-~gv~~hHagl~~--~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vV--I~~~~~yd~~ 852 (2158)
.+.|+..++ ..|...|+++.+ .+++.+++.|++|+++|||+|+++++|+|+|++++| ++.+.+.+.+
T Consensus 435 ~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~p 514 (679)
T PRK05580 435 VGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSP 514 (679)
T ss_pred eeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCC
Confidence 123444433 578888999874 678999999999999999999999999999999987 5556666655
Q ss_pred CCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHH
Q 000114 853 KGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 853 ~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (2158)
..+..+-..+.|+|++|||||.+ ..|.+++.|...+...+.
T Consensus 515 dfra~Er~~~~l~q~~GRagR~~--~~g~viiqT~~p~~~~~~ 555 (679)
T PRK05580 515 DFRASERTFQLLTQVAGRAGRAE--KPGEVLIQTYHPEHPVIQ 555 (679)
T ss_pred ccchHHHHHHHHHHHHhhccCCC--CCCEEEEEeCCCCCHHHH
Confidence 55555666889999999999965 679999999887644433
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-26 Score=274.73 Aligned_cols=446 Identities=17% Similarity=0.179 Sum_probs=318.9
Q ss_pred HHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEE
Q 000114 1344 PIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV 1423 (2158)
Q Consensus 1344 ~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~ 1423 (2158)
++-.+.+.++ +.+..+||.|.||||||...-..+... . -.+++.++-+..|+|.-|..++.++.+.++..+|..|+
T Consensus 268 ~ykdell~av-~e~QVLiI~GeTGSGKTTQiPQyL~Ea--G-ytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVG 343 (902)
T KOG0923|consen 268 PYKDELLKAV-KEHQVLIIVGETGSGKTTQIPQYLYEA--G-YTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVG 343 (902)
T ss_pred hhHHHHHHHH-HhCcEEEEEcCCCCCccccccHHHHhc--c-cccCCceEeecCcchHHHHHHHHHHHHHhCcccccccc
Confidence 3444555555 446779999999999996543333221 1 12233358899999999999999998888766666654
Q ss_pred EEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCce
Q 000114 1424 ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIR 1503 (2158)
Q Consensus 1424 ~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~r 1503 (2158)
.-.. .....-.+.-|-++|.+. ++|.+.....+.+.+++||||||. +.-....++..++.|... .++.+
T Consensus 344 YsIR---FEdcTSekTvlKYMTDGm---LlREfL~epdLasYSViiiDEAHE----RTL~TDILfgLvKDIar~-RpdLK 412 (902)
T KOG0923|consen 344 YSIR---FEDCTSEKTVLKYMTDGM---LLREFLSEPDLASYSVIIVDEAHE----RTLHTDILFGLVKDIARF-RPDLK 412 (902)
T ss_pred eEEE---eccccCcceeeeeecchh---HHHHHhccccccceeEEEeehhhh----hhhhhhHHHHHHHHHHhh-CCcce
Confidence 3221 011112355788999997 456666677899999999999993 323344566677777665 56999
Q ss_pred EEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHH---HhHhcCCCEEEE
Q 000114 1504 IVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIV---QHAKNEKPALVF 1580 (2158)
Q Consensus 1504 iV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~---~~~~~~~~~IVF 1580 (2158)
++..|||+ +++.+..|++..+ +|.++. |..|+.+++...+..++... ++..+. .. .+.+.+|||
T Consensus 413 llIsSAT~-DAekFS~fFDdap--IF~iPG--RRyPVdi~Yt~~PEAdYldA-------ai~tVlqIH~t-qp~GDILVF 479 (902)
T KOG0923|consen 413 LLISSATM-DAEKFSAFFDDAP--IFRIPG--RRYPVDIFYTKAPEADYLDA-------AIVTVLQIHLT-QPLGDILVF 479 (902)
T ss_pred EEeecccc-CHHHHHHhccCCc--EEeccC--cccceeeecccCCchhHHHH-------HHhhheeeEec-cCCccEEEE
Confidence 99999998 8999999998764 777655 55566677666555554332 122222 22 567889999
Q ss_pred ecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCc
Q 000114 1581 VPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKI 1660 (2158)
Q Consensus 1581 v~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i 1660 (2158)
....+..+.+...|...+..-+...+ ..-|..+|++|+.+.+..|++.-..|..
T Consensus 480 ltGQeEIEt~~e~l~~~~~~LGski~--------------------------eliv~PiYaNLPselQakIFePtP~gaR 533 (902)
T KOG0923|consen 480 LTGQEEIETVKENLKERCRRLGSKIR--------------------------ELIVLPIYANLPSELQAKIFEPTPPGAR 533 (902)
T ss_pred eccHHHHHHHHHHHHHHHHHhccccc--------------------------eEEEeeccccCChHHHHhhcCCCCCCce
Confidence 99999887777666544432222111 1127899999999999999999999999
Q ss_pred eEEEecCccccccCCCccEEEEec----ceeecCCCCc----CcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHH
Q 000114 1661 KVCVMSSSMCWGVPLTAHLVVVMG----TQYYDGQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEY 1732 (2158)
Q Consensus 1661 ~VLVaT~~la~Gvdlp~~~vVI~g----t~~yd~~~~~----~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~ 1732 (2158)
+|++||++++.++.++++.+||-. ...|+++++. -.|+|..+..||+|||||.| .|+|+-++.. ..
T Consensus 534 KVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRLYt~---~a 607 (902)
T KOG0923|consen 534 KVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRLYTA---WA 607 (902)
T ss_pred eEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEeech---hh
Confidence 999999999999999999999932 2457777554 45889999999999999975 9999999986 56
Q ss_pred HHHHhhC---CCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccHHHHHHHHHH
Q 000114 1733 YKKFLYD---AFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVE 1809 (2158)
Q Consensus 1733 ~~k~l~~---~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~lve 1809 (2158)
|...|.. |+....+|.. .+..--+.| |. |.+.+.|+ ..|.. +.+.
T Consensus 608 Y~~eLE~~t~PEIqRtnL~n----vVL~LkSLG-I~------Dl~~FdFm-----DpPp~----------------etL~ 655 (902)
T KOG0923|consen 608 YEHELEEMTVPEIQRTNLGN----VVLLLKSLG-IH------DLIHFDFL-----DPPPT----------------ETLL 655 (902)
T ss_pred hhhhhccCCCcceeeccchh----HHHHHHhcC-cc------hhcccccC-----CCCCh----------------HHHH
Confidence 7777653 4444455533 222222333 22 33444443 34443 6778
Q ss_pred HHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHhcCccccCCCCCcchHHH
Q 000114 1810 NTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEV 1886 (2158)
Q Consensus 1810 ~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~ 1886 (2158)
.+|..|...|++ +.....|.+|+.||.|+++|...+++..+-+.+++ .+++.|.|+.+.+..+.-|+.+...
T Consensus 656 ~aLE~LyaLGAL----n~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs-~EiitiaamlS~~~svfyrpk~~~v 727 (902)
T KOG0923|consen 656 KALEQLYALGAL----NHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCS-EEIITIAAMLSVGASVFYRPKDKQV 727 (902)
T ss_pred HHHHHHHHhhcc----ccccchhhhhhhhhhcCCCHHHHhHHhhhccccch-HHHHHHHHHHhcCchheecchhhhh
Confidence 899999999998 33467888999999999999999999987666655 7899999999999999889887644
|
|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-27 Score=262.89 Aligned_cols=339 Identities=19% Similarity=0.287 Sum_probs=250.5
Q ss_pred CCCCCcccccChhHHHHHhcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEc
Q 000114 1318 DLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (2158)
Q Consensus 1318 dl~p~~~~~L~~~~~~~l~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~Ia 1397 (2158)
+-..+|++.-....+.+.|. ...|+|.|..++++.+.+.+ +++..|||.||++||.||.+ ...| -+++|+
T Consensus 72 dkd~fpws~e~~~ilk~~f~-lekfrplq~~ain~~ma~ed-~~lil~tgggkslcyqlpal------~adg--~alvi~ 141 (695)
T KOG0353|consen 72 DKDDFPWSDEAKDILKEQFH-LEKFRPLQLAAINATMAGED-AFLILPTGGGKSLCYQLPAL------CADG--FALVIC 141 (695)
T ss_pred ccCCCCCchHHHHHHHHHhh-HHhcChhHHHHhhhhhccCc-eEEEEeCCCccchhhhhhHH------hcCC--ceEeec
Confidence 34556777666677788777 88999999999999998776 99999999999999999998 2355 799999
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchh-hh-----c---ccCCcEEEeCHHHHHH---HHhhhhccccccce
Q 000114 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD-LK-----L---LEKGQIIISTPEKWDA---LSRRWKQRKYVQQV 1465 (2158)
Q Consensus 1398 P~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~-~~-----~---l~~~~IIV~TPe~l~~---l~r~~~~~~~l~~v 1465 (2158)
|..+|+.++.-.++ .+ |+....+....+.. .+ . -..-.+|+.|||++.. ++.+.........+
T Consensus 142 plislmedqil~lk-ql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~ 216 (695)
T KOG0353|consen 142 PLISLMEDQILQLK-QL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFF 216 (695)
T ss_pred hhHHHHHHHHHHHH-Hh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhccee
Confidence 99999999888887 33 56666665544433 11 1 1123799999999853 33333333456678
Q ss_pred eEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC--hHHHHHHhccCCCceEecCCCCcccccEEE
Q 000114 1466 SLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLGEWIGATSHGLFNFPPGVRPVPLEIH 1543 (2158)
Q Consensus 1466 ~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n--~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~ 1543 (2158)
.++-|||+|+.. .+|+.++.-++-+.-+.+|+ ++..++||+||..| ..|..+.|+... .|.|...+....+...
T Consensus 217 ~~iaidevhccs-qwghdfr~dy~~l~ilkrqf-~~~~iigltatatn~vl~d~k~il~ie~--~~tf~a~fnr~nl~ye 292 (695)
T KOG0353|consen 217 KLIAIDEVHCCS-QWGHDFRPDYKALGILKRQF-KGAPIIGLTATATNHVLDDAKDILCIEA--AFTFRAGFNRPNLKYE 292 (695)
T ss_pred EEEeecceeehh-hhCcccCcchHHHHHHHHhC-CCCceeeeehhhhcchhhHHHHHHhHHh--hheeecccCCCCceeE
Confidence 999999999986 55677776666666666665 47899999999887 466777777664 3445554443344444
Q ss_pred EecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhh
Q 000114 1544 IQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNI 1623 (2158)
Q Consensus 1544 i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i 1623 (2158)
+..-+... .. ........|... -.+...||||-|++.|+.++..|..
T Consensus 293 v~qkp~n~--dd---~~edi~k~i~~~-f~gqsgiiyc~sq~d~ekva~alkn--------------------------- 339 (695)
T KOG0353|consen 293 VRQKPGNE--DD---CIEDIAKLIKGD-FAGQSGIIYCFSQKDCEKVAKALKN--------------------------- 339 (695)
T ss_pred eeeCCCCh--HH---HHHHHHHHhccc-cCCCcceEEEeccccHHHHHHHHHh---------------------------
Confidence 43322211 10 011122222222 3466799999999999999976632
Q ss_pred hHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHH
Q 000114 1624 QEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDL 1703 (2158)
Q Consensus 1624 ~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~ 1703 (2158)
.+...+.||+.|.+++|.-+.+.+..|+|+|+|||-.+++|||-|++++|| |...|.|+..|
T Consensus 340 --------~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvi----------hhsl~ksieny 401 (695)
T KOG0353|consen 340 --------HGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVI----------HHSLPKSIENY 401 (695)
T ss_pred --------cCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEE----------ecccchhHHHH
Confidence 344468899999999999999999999999999999999999999999999 77889999999
Q ss_pred HH-------------------------------------------hhccCCCCCCCCceEEEEEecCC
Q 000114 1704 LQ-------------------------------------------MMGHASRPLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1704 lQ-------------------------------------------r~GRaGR~g~d~~G~~iil~~~~ 1728 (2158)
.| ..|||||.+ ..+.|++++.-.
T Consensus 402 yqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~--~~a~cilyy~~~ 467 (695)
T KOG0353|consen 402 YQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDD--MKADCILYYGFA 467 (695)
T ss_pred HHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCC--CcccEEEEechH
Confidence 99 789999974 678888877543
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-26 Score=301.12 Aligned_cols=399 Identities=18% Similarity=0.184 Sum_probs=249.8
Q ss_pred CCCCHHHHHHHHHHhcC--CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1340 KHFNPIQTQVFTVLYNT--DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~--~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
..+++.|.++++.+.++ ..++++.||||||||.+|+.++...+.. ++ +++|++|+++|+.|+++++++.|+
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~--~vLvLvPt~~L~~Q~~~~l~~~fg-- 215 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GK--QALVLVPEIALTPQMLARFRARFG-- 215 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---CC--eEEEEeCcHHHHHHHHHHHHHHhC--
Confidence 36999999999999874 5679999999999999998888777654 44 899999999999999999997764
Q ss_pred CCcEEEEEcCCcchhhh-----cc--cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC--CCChHHH-H
Q 000114 1418 LGMRVVELTGETAMDLK-----LL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ--GGPVLEV-I 1487 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~~~-----~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~--~g~~~e~-~ 1487 (2158)
.++..++|+.+...+ .+ ...+|+|+||..+. ..+++++++||||+|..+-. .++.+.. -
T Consensus 216 --~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~---------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~ 284 (679)
T PRK05580 216 --APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF---------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARD 284 (679)
T ss_pred --CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc---------ccccCCCEEEEECCCccccccCcCCCCcHHH
Confidence 578899998765422 11 24599999997642 34788999999999976532 3444321 1
Q ss_pred HHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCC--cccccEEEEecccccchHHHHHhcChHHHH
Q 000114 1488 VSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGV--RPVPLEIHIQGVDITNFEARMQAMTKPTFT 1565 (2158)
Q Consensus 1488 isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~--rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~ 1565 (2158)
+..++. ...+.++|++|||++ .+.+..-. ......+...... ++.| .+.+..............+....+.
T Consensus 285 va~~ra----~~~~~~~il~SATps-~~s~~~~~-~g~~~~~~l~~r~~~~~~p-~v~~id~~~~~~~~~~~~ls~~l~~ 357 (679)
T PRK05580 285 LAVVRA----KLENIPVVLGSATPS-LESLANAQ-QGRYRLLRLTKRAGGARLP-EVEIIDMRELLRGENGSFLSPPLLE 357 (679)
T ss_pred HHHHHh----hccCCCEEEEcCCCC-HHHHHHHh-ccceeEEEeccccccCCCC-eEEEEechhhhhhcccCCCCHHHHH
Confidence 111111 135789999999953 33332221 1111222222211 1122 2222221110000000124566777
Q ss_pred HHHHhHhcCCCEEEEecChHHHHHHHHHHHh------------------------hcccCCcccccccCCCcccchh---
Q 000114 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMT------------------------YSSMDGDQKSAFLLWPAEEVEP--- 1618 (2158)
Q Consensus 1566 ~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~------------------------~~~~~~~~~~~~l~~~~~~l~~--- 1618 (2158)
.+.+.+..++++|||+|+|..+-.+...-|. +|.........+..|....+..
T Consensus 358 ~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~ 437 (679)
T PRK05580 358 AIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGP 437 (679)
T ss_pred HHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeec
Confidence 8888888899999999987644322221111 1111111111122222222222
Q ss_pred hHhhhhHHHHHHHhcccEEEecCCCC--HHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEE-ecceee--cCCCC
Q 000114 1619 FIDNIQEEMLKATLRHGVGYLHEGLN--KTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV-MGTQYY--DGQEN 1693 (2158)
Q Consensus 1619 ~~~~i~d~~L~~~l~~gv~~~H~~l~--~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI-~gt~~y--d~~~~ 1693 (2158)
-.+++.+..-+.+.+..|..+|+++. ..+++.+++.|++|+++|||+|+.+++|+|+|++.+|+ .+.... .+.-
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdf- 516 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDF- 516 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCcc-
Confidence 23444444333334568999999986 46789999999999999999999999999999988664 322110 0000
Q ss_pred cCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhhCCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHH
Q 000114 1694 AHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDY 1773 (2158)
Q Consensus 1694 ~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~ 1773 (2158)
+........|+|++|||||.+ ..|.+++.+..++...++.... +|--.|
T Consensus 517 ra~Er~~~~l~q~~GRagR~~--~~g~viiqT~~p~~~~~~~~~~-----------------------------~d~~~f 565 (679)
T PRK05580 517 RASERTFQLLTQVAGRAGRAE--KPGEVLIQTYHPEHPVIQALLA-----------------------------QDYDAF 565 (679)
T ss_pred chHHHHHHHHHHHHhhccCCC--CCCEEEEEeCCCCCHHHHHHHh-----------------------------CCHHHH
Confidence 000012578999999999964 7899999998876444432221 122234
Q ss_pred HHHhhhhhhhccCCCCccCCCC
Q 000114 1774 LTWTFMYRRLTQNPNYYNLQGV 1795 (2158)
Q Consensus 1774 l~~t~~yrRl~~nP~~Y~~~~~ 1795 (2158)
+....-.|+....|.|+.+-.+
T Consensus 566 ~~~El~~R~~~~~PPf~~l~~i 587 (679)
T PRK05580 566 AEQELEERRAAGYPPFGRLALL 587 (679)
T ss_pred HHHHHHHHHhcCCCCHHHhhEe
Confidence 4455556777888999877654
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-26 Score=321.91 Aligned_cols=328 Identities=19% Similarity=0.216 Sum_probs=215.9
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.|| +|+++|+++++.++.+.+ ++++||||||||++++++.+.... .+.++|||+||++|+.|+++.+
T Consensus 76 ~G~-~pt~iQ~~~i~~il~G~d-~li~APTGsGKTl~~~~~al~~~~-----------~g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 76 TGF-EFWSIQKTWAKRILRGKS-FSIVAPTGMGKSTFGAFIALFLAL-----------KGKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred hCC-CCCHHHHHHHHHHHcCCC-EEEEEcCCCCHHHHHHHHHHHHHh-----------cCCeEEEEECHHHHHHHHHHHH
Confidence 478 699999999999999865 999999999999976665554322 2348999999999999999999
Q ss_pred HhhcccC--CcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc----
Q 000114 571 SNRLQMY--DVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD---- 637 (2158)
Q Consensus 571 ~~~~~~~--gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d---- 637 (2158)
+.++... ++++..++|+.+...+. ...++|+|+||+.+....... ...++++|||||||++.+
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l----~~~~i~~iVVDEAD~ml~~~kn 218 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM----KHLKFDFIFVDDVDAFLKASKN 218 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----hhCCCCEEEEECceeccccccc
Confidence 9977654 56778888988765432 125899999999862222211 126689999999998864
Q ss_pred --------CChhhHHH----HHH---------------HHHHHHhhcccccc-EEEEccccCChHHHHHHHhccccCceE
Q 000114 638 --------NRGPVLES----IVA---------------RTVRQIETTKEHIR-LVGLSATLPNYEDVALFLRVNLEKGLF 689 (2158)
Q Consensus 638 --------~rg~~le~----iv~---------------r~~~~~~~~~~~~r-iv~lSATlpn~~dv~~~l~~~~~~~~~ 689 (2158)
++.+.+.. ++. ++.......+...+ ++.+|||++...+...+++... .|
T Consensus 219 id~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l---~f 295 (1638)
T PRK14701 219 IDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELL---GF 295 (1638)
T ss_pred cchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCe---EE
Confidence 34444432 211 11111112233444 5679999987666666664321 12
Q ss_pred EecCCcccc--cceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHH---HHHHHHHHHHhhcccccc
Q 000114 690 YFDNSYRPV--PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKET---AKTARAIRDTALENDTLG 764 (2158)
Q Consensus 690 ~f~~~~rpv--~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~---~~~a~~L~~~~~~~~~~~ 764 (2158)
... ..++. .+.+.++... . ..+ .. +.+ +.... +.++||||+|++.+ +.++..|...++.
T Consensus 296 ~v~-~~~~~lr~i~~~yi~~~--~-~~k-~~----L~~-ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~----- 359 (1638)
T PRK14701 296 EVG-SGRSALRNIVDVYLNPE--K-IIK-EH----VRE-LLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFK----- 359 (1638)
T ss_pred Eec-CCCCCCCCcEEEEEECC--H-HHH-HH----HHH-HHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCe-----
Confidence 222 22221 1222322211 1 111 11 122 22222 46899999998864 7889888876543
Q ss_pred cccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEech----hhhhccCCCc-e
Q 000114 765 RFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA----TLAWGVNLPA-H 839 (2158)
Q Consensus 765 ~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~----tla~GVdlP~-v 839 (2158)
+..+||+ |..+++.|++|+++|||||+ +++||||+|+ +
T Consensus 360 --------------------------------a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~V 402 (1638)
T PRK14701 360 --------------------------------IELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERI 402 (1638)
T ss_pred --------------------------------EEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCcc
Confidence 4456885 88999999999999999994 8999999999 9
Q ss_pred EEEEecccccCCCCCccccCCHH-------------HHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHhhcC
Q 000114 840 TVIIKGTQIYNPEKGAWTELSPL-------------DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQ 900 (2158)
Q Consensus 840 ~vVI~~~~~yd~~~g~~~~~s~~-------------~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~ 900 (2158)
++||+ |+.|+.+ +|+. ..+++.|||||.|. .+.++............+++..
T Consensus 403 ryvi~----~~~Pk~~---~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~--~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 403 RFAVF----YGVPKFR---FRVDLEDPTIYRILGLLSEILKIEEELKEGI--PIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred CEEEE----eCCCCCC---cchhhcccchhhhhcchHHHHHhhhhcccCC--cchhHHHhHHHHHHHHHHHhcc
Confidence 99999 6666532 2222 34566799999884 4555544444444455555444
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-25 Score=303.82 Aligned_cols=336 Identities=22% Similarity=0.309 Sum_probs=220.2
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
+.-+++++|.+++..++.+ |+|+++|||+|||.+|++++...+.. .+.++|||+|+++|+.|+.+.++
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~--n~lv~~ptG~GKT~~a~~~i~~~l~~----------~~~~vLvl~Pt~~L~~Q~~~~~~ 79 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK--NTLVVLPTGLGKTAIALLVIAERLHK----------KGGKVLILAPTKPLVEQHAEFFR 79 (773)
T ss_pred CcCCccHHHHHHHHHHhcC--CeEEEcCCCccHHHHHHHHHHHHHHh----------CCCeEEEEeCcHHHHHHHHHHHH
Confidence 3447899999999988876 79999999999999999999887732 12489999999999999999999
Q ss_pred hhcccCCcEEEEEeCCCccCHh--hhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHH
Q 000114 572 NRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVAR 649 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r 649 (2158)
+.++..+.++..++|+...... ...+.+|+|+||+.+...... ....+.++++|||||||++....+ ...+..+
T Consensus 80 ~~~~~~~~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~~~liVvDEaH~~~~~~~--~~~i~~~ 155 (773)
T PRK13766 80 KFLNIPEEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIA--GRISLEDVSLLIFDEAHRAVGNYA--YVYIAER 155 (773)
T ss_pred HHhCCCCceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHc--CCCChhhCcEEEEECCcccccccc--HHHHHHH
Confidence 8776545688899998765442 245789999999987222111 124567899999999998864322 2222222
Q ss_pred HHHHHhhccccccEEEEccccC-ChHHHHHHHhccccCceEEecCCccc----c--cceeEEEeeccCChh---------
Q 000114 650 TVRQIETTKEHIRLVGLSATLP-NYEDVALFLRVNLEKGLFYFDNSYRP----V--PLSQQYIGIQVKKPL--------- 713 (2158)
Q Consensus 650 ~~~~~~~~~~~~riv~lSATlp-n~~dv~~~l~~~~~~~~~~f~~~~rp----v--~l~~~~~~~~~~~~~--------- 713 (2158)
. .......+++|||||+. +.+.+...+..-. ...+.+.+.+.+ . +....++.+......
T Consensus 156 ~----~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~-i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~ 230 (773)
T PRK13766 156 Y----HEDAKNPLVLGLTASPGSDEEKIKEVCENLG-IEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNE 230 (773)
T ss_pred H----HhcCCCCEEEEEEcCCCCCHHHHHHHHHhCC-ceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHH
Confidence 2 22345678999999964 2333333322110 001111111100 0 000000000000000
Q ss_pred -------------------------------HH---------------HH------------------------------
Q 000114 714 -------------------------------QR---------------FQ------------------------------ 717 (2158)
Q Consensus 714 -------------------------------~~---------------~~------------------------------ 717 (2158)
.. ..
T Consensus 231 ~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l 310 (773)
T PRK13766 231 ALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERL 310 (773)
T ss_pred HHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 00 00
Q ss_pred ------------------------Hh---h---------HHHHHHHHHH---hCCCeEEEEecChHHHHHHHHHHHHHhh
Q 000114 718 ------------------------LM---N---------DLCYEKVVAV---AGKHQVLIFVHSRKETAKTARAIRDTAL 758 (2158)
Q Consensus 718 ------------------------~l---~---------~~~~~~i~~~---~~~~~vLVFv~sr~~~~~~a~~L~~~~~ 758 (2158)
.+ . ..+.+.+.+. .+++++||||++++.|..++..|...+.
T Consensus 311 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~ 390 (773)
T PRK13766 311 REEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGI 390 (773)
T ss_pred HhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCC
Confidence 00 0 0000011111 3467999999999999999999976554
Q ss_pred cccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCc
Q 000114 759 ENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPA 838 (2158)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~ 838 (2158)
....+ . +.+-..-|+||++.+|..+++.|++|.++|||||+++++|+|+|+
T Consensus 391 ~~~~~---~--------------------------g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~ 441 (773)
T PRK13766 391 KAVRF---V--------------------------GQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPS 441 (773)
T ss_pred ceEEE---E--------------------------ccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCccc
Confidence 32211 0 000000167899999999999999999999999999999999999
Q ss_pred eEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCc
Q 000114 839 HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2158)
Q Consensus 839 v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (2158)
+++||+ ||++. +...|+||+||+||.| .|.+++++..+.
T Consensus 442 ~~~VI~----yd~~~------s~~r~iQR~GR~gR~~---~~~v~~l~~~~t 480 (773)
T PRK13766 442 VDLVIF----YEPVP------SEIRSIQRKGRTGRQE---EGRVVVLIAKGT 480 (773)
T ss_pred CCEEEE----eCCCC------CHHHHHHHhcccCcCC---CCEEEEEEeCCC
Confidence 999999 77654 7778999999999965 478888877644
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.7e-26 Score=312.26 Aligned_cols=304 Identities=22% Similarity=0.214 Sum_probs=200.7
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
|+ +|+++|..+++.++.+. +++++||||+|||. |.++++..+.. .+.+++||+||++||.|+++.++
T Consensus 78 G~-~pt~iQ~~~i~~il~g~-dv~i~ApTGsGKT~-f~l~~~~~l~~----------~g~~alIL~PTreLa~Qi~~~l~ 144 (1176)
T PRK09401 78 GS-KPWSLQRTWAKRLLLGE-SFAIIAPTGVGKTT-FGLVMSLYLAK----------KGKKSYIIFPTRLLVEQVVEKLE 144 (1176)
T ss_pred CC-CCcHHHHHHHHHHHCCC-cEEEEcCCCCCHHH-HHHHHHHHHHh----------cCCeEEEEeccHHHHHHHHHHHH
Confidence 66 89999999999998875 59999999999996 44555444432 24589999999999999999999
Q ss_pred hhcccCCcEEEEEeCCCccCH---h-h-----hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-C---
Q 000114 572 NRLQMYDVKVRELSGDQTLTR---Q-Q-----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N--- 638 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~---~-~-----~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~--- 638 (2158)
.++...++.+..++|+..... . . ...++|+|+||+++...... .....+++|||||||.+.+ .
T Consensus 145 ~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~----l~~~~~~~lVvDEaD~~L~~~k~i 220 (1176)
T PRK09401 145 KFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE----LPKKKFDFVFVDDVDAVLKSSKNI 220 (1176)
T ss_pred HHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh----ccccccCEEEEEChHHhhhcccch
Confidence 998888888888887765321 1 1 13589999999987332221 2344599999999998875 1
Q ss_pred --------C-hhhHHHHHHHHHH----------------HHhh-ccccccEEEEccccCChHHHHH-HHhccccCceEEe
Q 000114 639 --------R-GPVLESIVARTVR----------------QIET-TKEHIRLVGLSATLPNYEDVAL-FLRVNLEKGLFYF 691 (2158)
Q Consensus 639 --------r-g~~le~iv~r~~~----------------~~~~-~~~~~riv~lSATlpn~~dv~~-~l~~~~~~~~~~f 691 (2158)
+ ...++.++..+.. .+.. .....|++++|||++.. .+.. +++... .|..
T Consensus 221 d~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~-~~~~~l~~~ll---~~~v 296 (1176)
T PRK09401 221 DKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPR-GNRVKLFRELL---GFEV 296 (1176)
T ss_pred hhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCcc-chHHHHhhccc---eEEe
Confidence 2 1344444433311 0000 11267899999998742 1211 222110 1111
Q ss_pred cCC-cccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHH---HHHHHHHHHHHhhccccccccc
Q 000114 692 DNS-YRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKE---TAKTARAIRDTALENDTLGRFL 767 (2158)
Q Consensus 692 ~~~-~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~---~~~~a~~L~~~~~~~~~~~~~~ 767 (2158)
... ...-.+.+.++... .+...+.. +.... +.++||||++++. +..++..|...++.
T Consensus 297 ~~~~~~~rnI~~~yi~~~-----~k~~~L~~-----ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~-------- 357 (1176)
T PRK09401 297 GSPVFYLRNIVDSYIVDE-----DSVEKLVE-----LVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDLGIN-------- 357 (1176)
T ss_pred cCcccccCCceEEEEEcc-----cHHHHHHH-----HHHhc-CCCEEEEEecccChHHHHHHHHHHHHCCCc--------
Confidence 111 11112333333222 11111211 22222 4689999999887 99999999876543
Q ss_pred ccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEe----chhhhhccCCCc-eEEE
Q 000114 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS----TATLAWGVNLPA-HTVI 842 (2158)
Q Consensus 768 ~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVa----T~tla~GVdlP~-v~vV 842 (2158)
++..||+| +| .++.|++|+++|||| |++++||+|+|+ +++|
T Consensus 358 -----------------------------v~~~hg~l---~~--~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryV 403 (1176)
T PRK09401 358 -----------------------------AELAISGF---ER--KFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYA 403 (1176)
T ss_pred -----------------------------EEEEeCcH---HH--HHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEE
Confidence 45569999 22 349999999999999 689999999999 8999
Q ss_pred EecccccCCCCCccccCCHHHHHHhhcccCC
Q 000114 843 IKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2158)
Q Consensus 843 I~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2158)
|+ |+.|+.++.---...+.||+||+-+
T Consensus 404 I~----y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 404 IF----YGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred EE----eCCCCEEEeccccccCHHHHHHHHh
Confidence 99 6666533222123468999999864
|
|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=282.41 Aligned_cols=341 Identities=19% Similarity=0.270 Sum_probs=221.5
Q ss_pred hcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1336 YQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1336 ~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
|...-.++.+|.+....++ +.|+||++|||+|||++|...+++++.. .+++ |+|+++|++-|+.|+...++ .++
T Consensus 57 ~p~~~~lR~YQ~eivq~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~rw-~p~~--KiVF~aP~~pLv~QQ~a~~~-~~~ 130 (746)
T KOG0354|consen 57 YPTNLELRNYQEELVQPAL--GKNTIIALPTGSGKTFIAAVIMKNHFEW-RPKG--KVVFLAPTRPLVNQQIACFS-IYL 130 (746)
T ss_pred ccCcccccHHHHHHhHHhh--cCCeEEEeecCCCccchHHHHHHHHHhc-CCcc--eEEEeeCCchHHHHHHHHHh-hcc
Confidence 3445689999999999988 6789999999999999999999999988 4556 99999999999999997776 444
Q ss_pred CCCCcEEEEEcCCcc-hh--hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHH
Q 000114 1416 QGLGMRVVELTGETA-MD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492 (2158)
Q Consensus 1416 ~~~g~~v~~ltG~~~-~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~ 1492 (2158)
. +..+....||.. .. .......+|+|+||+.+.+-+..-... .++.+.++||||||+-. +.+.|..++..+.
T Consensus 131 ~--~~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~-~ls~fs~iv~DE~Hra~--kn~~Y~~Vmr~~l 205 (746)
T KOG0354|consen 131 I--PYSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHD-ELSDFSLIVFDECHRTS--KNHPYNNIMREYL 205 (746)
T ss_pred C--cccceeeccCccCCCchhhhhcccceEEeChHhhhhhccccccc-ccceEEEEEEccccccc--ccccHHHHHHHHH
Confidence 3 245555555533 22 345566799999999987666543322 27899999999999864 3455666665444
Q ss_pred HHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCce-----------EecCCCC--cccccEEEE--------------
Q 000114 1493 YIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGL-----------FNFPPGV--RPVPLEIHI-------------- 1544 (2158)
Q Consensus 1493 ~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i-----------~~f~~~~--rpv~l~~~i-------------- 1544 (2158)
.... ...||+|||||+++ ...+.+.+..--..+ +...-.. -|+++....
T Consensus 206 ~~k~---~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~ 282 (746)
T KOG0354|consen 206 DLKN---QGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPL 282 (746)
T ss_pred Hhhh---ccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHH
Confidence 4332 23499999999986 334443332211000 0000000 111110000
Q ss_pred -------------------------------ecccccch---HH---HH-------------------------------
Q 000114 1545 -------------------------------QGVDITNF---EA---RM------------------------------- 1556 (2158)
Q Consensus 1545 -------------------------------~~~~~~~~---~~---~~------------------------------- 1556 (2158)
.++..... .. +.
T Consensus 283 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k 362 (746)
T KOG0354|consen 283 LQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKK 362 (746)
T ss_pred HHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhH
Confidence 00000000 00 00
Q ss_pred ---------------HhcC------------hHHHHHHH----Hh--HhcCCCEEEEecChHHHHHHHHHHHhhcccCCc
Q 000114 1557 ---------------QAMT------------KPTFTAIV----QH--AKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGD 1603 (2158)
Q Consensus 1557 ---------------~~~~------------k~~~~~i~----~~--~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~ 1603 (2158)
..|. .+.+..+. .+ ..+..++||||.+|..|..+-..|.. ....+.
T Consensus 363 ~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~-~~~~~i 441 (746)
T KOG0354|consen 363 YLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQ-LHELGI 441 (746)
T ss_pred HHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHh-hhhccc
Confidence 0000 00011111 01 02345799999999999888877653 111111
Q ss_pred ccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEe
Q 000114 1604 QKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVM 1683 (2158)
Q Consensus 1604 ~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~ 1683 (2158)
... .+.+.|-+.--.||++.++..+++.|++|.++|||||++++.|+|++.+.+||
T Consensus 442 r~~-----------------------~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVI- 497 (746)
T KOG0354|consen 442 KAE-----------------------IFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVI- 497 (746)
T ss_pred ccc-----------------------eeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEE-
Confidence 111 11233333333799999999999999999999999999999999999999999
Q ss_pred cceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC
Q 000114 1684 GTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1684 gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~ 1728 (2158)
.||.. -++...+||+|| ||. +.|+|++++...
T Consensus 498 ---cYd~~------snpIrmIQrrGR-gRa---~ns~~vll~t~~ 529 (746)
T KOG0354|consen 498 ---CYDYS------SNPIRMVQRRGR-GRA---RNSKCVLLTTGS 529 (746)
T ss_pred ---EecCC------ccHHHHHHHhcc-ccc---cCCeEEEEEcch
Confidence 45543 368899999999 995 689999998854
|
|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-26 Score=301.62 Aligned_cols=328 Identities=23% Similarity=0.260 Sum_probs=247.7
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.|.+.|++-|.+|+...+.|.+ ++|.+|||+||++||.+|++-. +...|+|.|..+|++.+...+
T Consensus 260 Fg~~~FR~~Q~eaI~~~l~Gkd-~fvlmpTG~GKSLCYQlPA~l~--------------~gitvVISPL~SLm~DQv~~L 324 (941)
T KOG0351|consen 260 FGHKGFRPNQLEAINATLSGKD-CFVLMPTGGGKSLCYQLPALLL--------------GGVTVVISPLISLMQDQVTHL 324 (941)
T ss_pred hccccCChhHHHHHHHHHcCCc-eEEEeecCCceeeEeecccccc--------------CCceEEeccHHHHHHHHHHhh
Confidence 5899999999999998888876 9999999999999999998643 126899999999999999887
Q ss_pred HhhcccCCcEEEEEeCCCccCHhh-------hc--cccEEEcchhHHH---HHHhccCCCccccccceEEeeccccccc-
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQ-------IE--ETQIIVTTPEKWD---IITRKSGDRTYTQLVKLLIIDEIHLLHD- 637 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~-------~~--~~~IiV~TPekld---~l~r~~~~~~~l~~v~lIIiDEaH~l~d- 637 (2158)
.. .+|....++|+.....+. .+ ..+|+..|||++- .+.+..........+.++||||||++..
T Consensus 325 ~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqW 400 (941)
T KOG0351|consen 325 SK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQW 400 (941)
T ss_pred hh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhh
Confidence 43 478899999887764321 12 5789999999862 2222221111222388999999999854
Q ss_pred --CChhhHHHHHHHHHHHHhhccccccEEEEccccC--ChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChh
Q 000114 638 --NRGPVLESIVARTVRQIETTKEHIRLVGLSATLP--NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (2158)
Q Consensus 638 --~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlp--n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (2158)
++.|.+..+..-. ...+.+.+++||||.. -.+||.+-|+... + ..+..+|.+..+...+..-....
T Consensus 401 gHdFRp~Yk~l~~l~-----~~~~~vP~iALTATAT~~v~~DIi~~L~l~~--~-~~~~~sfnR~NL~yeV~~k~~~~-- 470 (941)
T KOG0351|consen 401 GHDFRPSYKRLGLLR-----IRFPGVPFIALTATATERVREDVIRSLGLRN--P-ELFKSSFNRPNLKYEVSPKTDKD-- 470 (941)
T ss_pred cccccHHHHHHHHHH-----hhCCCCCeEEeehhccHHHHHHHHHHhCCCC--c-ceecccCCCCCceEEEEeccCcc--
Confidence 4556655443211 1234589999999974 3578888887642 2 25666776666665544222111
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhc
Q 000114 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2158)
Q Consensus 714 ~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (2158)
....+...+........+||+|.+|++|+.++..|+..+..
T Consensus 471 -----~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~---------------------------------- 511 (941)
T KOG0351|consen 471 -----ALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKS---------------------------------- 511 (941)
T ss_pred -----chHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchh----------------------------------
Confidence 01112333444555789999999999999999999987633
Q ss_pred cCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCC
Q 000114 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2158)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2158)
.+++||||+..+|..|.+.|-.++++|+|||=++++|||.|+|+.||+ |+.|+ |...|.|-+|||||
T Consensus 512 ---a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH----~~lPk------s~E~YYQE~GRAGR 578 (941)
T KOG0351|consen 512 ---AAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIH----YSLPK------SFEGYYQEAGRAGR 578 (941)
T ss_pred ---hHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEE----CCCch------hHHHHHHhccccCc
Confidence 245699999999999999999999999999999999999999999999 77666 88899999999999
Q ss_pred CCCCCccEEEEEcCCCcHHHHHHhhcCC
Q 000114 874 PQYDSYGEGIIITGHSELRYYLSLMNQQ 901 (2158)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y~~ll~~~ 901 (2158)
.|. ...|++++...+......++...
T Consensus 579 DG~--~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 579 DGL--PSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred CCC--cceeEEecchhHHHHHHHHHHcc
Confidence 994 58899999998877777666544
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-25 Score=286.18 Aligned_cols=323 Identities=16% Similarity=0.191 Sum_probs=204.4
Q ss_pred CCCCHHHHHHHHHHHcCC--CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 494 TQLNRVQSRVYKSALSSA--DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~--~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
..|+|+|.+++..++..+ .+.++++|||+|||++++.++... . .++|||||+..|+.|+.++|.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-~-------------k~tLILvps~~Lv~QW~~ef~ 319 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-K-------------KSCLVLCTSAVSVEQWKQQFK 319 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-C-------------CCEEEEeCcHHHHHHHHHHHH
Confidence 478999999999988644 368999999999999998665432 1 159999999999999999999
Q ss_pred hhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCC----Cccc--cccceEEeecccccccCChhhHHH
Q 000114 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGD----RTYT--QLVKLLIIDEIHLLHDNRGPVLES 645 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~----~~~l--~~v~lIIiDEaH~l~d~rg~~le~ 645 (2158)
+++......+..++|+.... ......|+|+|+..+....++... ...+ ...++||+||||++.. +.+..
T Consensus 320 ~~~~l~~~~I~~~tg~~k~~--~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA---~~fr~ 394 (732)
T TIGR00603 320 MWSTIDDSQICRFTSDAKER--FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA---AMFRR 394 (732)
T ss_pred HhcCCCCceEEEEecCcccc--cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH---HHHHH
Confidence 87644445778888864321 123478999999864322111100 0112 3578999999999842 23333
Q ss_pred HHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEec-------CCcccccceeEEEeeccC--------
Q 000114 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFD-------NSYRPVPLSQQYIGIQVK-------- 710 (2158)
Q Consensus 646 iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~-------~~~rpv~l~~~~~~~~~~-------- 710 (2158)
++..+ .....+|||||+...++...-+.......++... ...-++......+.....
T Consensus 395 il~~l--------~a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~ 466 (732)
T TIGR00603 395 VLTIV--------QAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRE 466 (732)
T ss_pred HHHhc--------CcCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHh
Confidence 33221 2335699999976322211111110011111110 001111111111111110
Q ss_pred --ChhHHHHHhhHHHHHH---HHHHh--CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhc
Q 000114 711 --KPLQRFQLMNDLCYEK---VVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM 783 (2158)
Q Consensus 711 --~~~~~~~~l~~~~~~~---i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 783 (2158)
.....+..++..-+.. +.... .+.++||||.+...+..++..|
T Consensus 467 ~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L------------------------------ 516 (732)
T TIGR00603 467 NSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL------------------------------ 516 (732)
T ss_pred cchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc------------------------------
Confidence 0001112232221221 22222 4679999999988877776654
Q ss_pred cCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCC-CceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHH
Q 000114 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG-HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862 (2158)
Q Consensus 784 ~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g-~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~ 862 (2158)
|+.+.||+++..+|..+++.|++| .+++||+|.++.+|||+|++++||+ ++++.| |..
T Consensus 517 ------------~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~----~s~~~g-----S~~ 575 (732)
T TIGR00603 517 ------------GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ----ISSHYG-----SRR 575 (732)
T ss_pred ------------CCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEE----eCCCCC-----CHH
Confidence 123459999999999999999875 8899999999999999999999998 665433 788
Q ss_pred HHHHhhcccCCCCCCCc-----cEEEEEcCCCcHHHH
Q 000114 863 DIMQMLGRAGRPQYDSY-----GEGIIITGHSELRYY 894 (2158)
Q Consensus 863 ~~~Qr~GRAGR~g~d~~-----G~~iil~~~~~~~~y 894 (2158)
+|+||+||++|++.++. ...|.+++.+..+.+
T Consensus 576 q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~ 612 (732)
T TIGR00603 576 QEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMY 612 (732)
T ss_pred HHHHHhcccccCCCCCccccccceEEEEecCCchHHH
Confidence 99999999999985433 233777777655443
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-25 Score=287.84 Aligned_cols=424 Identities=16% Similarity=0.172 Sum_probs=297.7
Q ss_pred HHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCc
Q 000114 1350 FTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGET 1429 (2158)
Q Consensus 1350 ~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~ 1429 (2158)
|-.++..+..++|+||||||||...-..++..... .++ ++++..|+|--|..+++++.+.++...|-.|+...-
T Consensus 58 i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~--~~g--~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iR-- 131 (845)
T COG1643 58 ILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG--IAG--KIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIR-- 131 (845)
T ss_pred HHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc--cCC--eEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEE--
Confidence 33444557779999999999998877666655442 244 899999999999999999999888766666654321
Q ss_pred chhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEecc
Q 000114 1430 AMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALST 1509 (2158)
Q Consensus 1430 ~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSA 1509 (2158)
.+...-.+..|-++|.+.+...+. ....++.+++|||||+|. |.-....++.-++.+....+.+.++|.|||
T Consensus 132 -fe~~~s~~Trik~mTdGiLlrei~---~D~~Ls~ys~vIiDEaHE----RSl~tDilLgllk~~~~~rr~DLKiIimSA 203 (845)
T COG1643 132 -FESKVSPRTRIKVMTDGILLREIQ---NDPLLSGYSVVIIDEAHE----RSLNTDILLGLLKDLLARRRDDLKLIIMSA 203 (845)
T ss_pred -eeccCCCCceeEEeccHHHHHHHh---hCcccccCCEEEEcchhh----hhHHHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 112222466899999998655444 466799999999999993 333445577778887777777899999999
Q ss_pred CCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhH-hcCCCEEEEecChHHHH
Q 000114 1510 SLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNEKPALVFVPSRKYVR 1588 (2158)
Q Consensus 1510 Tl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~-~~~~~~IVFv~sr~~~~ 1588 (2158)
|+ |.+.|+.+++..+ ++.. ..|..|+++++......++. + .......+..+. ...+.+|||.+..++.+
T Consensus 204 Tl-d~~rfs~~f~~ap--vi~i--~GR~fPVei~Y~~~~~~d~~--l---~~ai~~~v~~~~~~~~GdILvFLpG~~EI~ 273 (845)
T COG1643 204 TL-DAERFSAYFGNAP--VIEI--EGRTYPVEIRYLPEAEADYI--L---LDAIVAAVDIHLREGSGSILVFLPGQREIE 273 (845)
T ss_pred cc-CHHHHHHHcCCCC--EEEe--cCCccceEEEecCCCCcchh--H---HHHHHHHHHHhccCCCCCEEEECCcHHHHH
Confidence 98 8899999998533 3333 44667777776433322221 1 111112222221 34678999999999999
Q ss_pred HHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCc
Q 000114 1589 LTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSS 1668 (2158)
Q Consensus 1589 ~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~ 1668 (2158)
.++..|... .+. -..-|..+||.|+.+++.++++.-..|+.+|++||++
T Consensus 274 ~~~~~L~~~-----------------------------~l~--~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNI 322 (845)
T COG1643 274 RTAEWLEKA-----------------------------ELG--DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNI 322 (845)
T ss_pred HHHHHHHhc-----------------------------ccc--CCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccc
Confidence 998777430 000 1234889999999999999999988898889999999
Q ss_pred cccccCCCccEEEEec----ceeecCCCCc----CcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhh--
Q 000114 1669 MCWGVPLTAHLVVVMG----TQYYDGQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLY-- 1738 (2158)
Q Consensus 1669 la~Gvdlp~~~vVI~g----t~~yd~~~~~----~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~-- 1738 (2158)
++.++.+|++++||-+ ...|+++.+. ..+.|-.+.-||.|||||. ..|+|+-+++.. .|..+..
T Consensus 323 AETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~---~pGicyRLyse~---~~~~~~~~t 396 (845)
T COG1643 323 AETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT---GPGICYRLYSEE---DFLAFPEFT 396 (845)
T ss_pred cccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccC---CCceEEEecCHH---HHHhcccCC
Confidence 9999999999999943 3468877654 3578899999999999995 599999999873 3335554
Q ss_pred CCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccHHHHHHHHHHHHHHHHHhC
Q 000114 1739 DAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEAS 1818 (2158)
Q Consensus 1739 ~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~lve~~l~~L~~~ 1818 (2158)
.|+...+.|...+.+ ..+-.+. .|...+.|+ ..|. ...+..++..|...
T Consensus 397 ~PEIlrtdLs~~vL~-----l~~~G~~-----~d~~~f~fl-----d~P~----------------~~~i~~A~~~L~~L 445 (845)
T COG1643 397 LPEILRTDLSGLVLQ-----LKSLGIG-----QDIAPFPFL-----DPPP----------------EAAIQAALTLLQEL 445 (845)
T ss_pred ChhhhhcchHHHHHH-----HHhcCCC-----CCcccCccC-----CCCC----------------hHHHHHHHHHHHHc
Confidence 466667777443332 1111111 011222222 2222 25678999999999
Q ss_pred CCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHhc
Q 000114 1819 KCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLAS 1870 (2158)
Q Consensus 1819 ~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils~ 1870 (2158)
|+|.. .-..|.+|.-||.++++++-++++..+-...+ ..+++.|.|.
T Consensus 446 GAld~----~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~-~~e~~~Ias~ 492 (845)
T COG1643 446 GALDD----SGKLTPLGKQMSLLPLDPRLARMLLTAPEGGC-LGEAATIASM 492 (845)
T ss_pred CCcCC----CCCCCHHHHHHHhCCCChHHHHHHHhccccCc-HHHHHHHHHh
Confidence 99942 23478889999999999999999998655333 4555555443
|
|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=278.59 Aligned_cols=366 Identities=23% Similarity=0.367 Sum_probs=241.9
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.|..+|.+.+..+ ..++.++|+|||.+|||.+-..+|=.++.. ...+ .+||++|+++|+.|....+..+|....-.
T Consensus 511 ~Pd~WQ~elLDsv-Dr~eSavIVAPTSaGKTfisfY~iEKVLRe-sD~~--VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 511 CPDEWQRELLDSV-DRNESAVIVAPTSAGKTFISFYAIEKVLRE-SDSD--VVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred CCcHHHHHHhhhh-hcccceEEEeeccCCceeccHHHHHHHHhh-cCCC--EEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 5788999998877 446779999999999999987887777766 5556 89999999999999999999899544333
Q ss_pred EEEEEcCCcchhhhc-ccCCcEEEeCHHHHHHHHhh-hhccccccceeEEEecccccccCC-CCChHHHHHHHHHHHHhh
Q 000114 1421 RVVELTGETAMDLKL-LEKGQIIISTPEKWDALSRR-WKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQ 1497 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~~~-l~~~~IIV~TPe~l~~l~r~-~~~~~~l~~v~llIiDEaH~l~~~-~g~~~e~~isrl~~i~~~ 1497 (2158)
+...+.|+.+.+.+. .-+++|+|+-||.+.+++-. .....+..+++.+|+||+|++|.. .|..+|.++-.
T Consensus 587 rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l------- 659 (1330)
T KOG0949|consen 587 RGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL------- 659 (1330)
T ss_pred cchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh-------
Confidence 444555666555332 22679999999999987765 223457889999999999999984 56666655432
Q ss_pred cCCCceEEEeccCCCChHHHHHHhccCC------CceEecCCCC---------------------------cccccEE--
Q 000114 1498 VENKIRIVALSTSLANAKDLGEWIGATS------HGLFNFPPGV---------------------------RPVPLEI-- 1542 (2158)
Q Consensus 1498 ~~~~~riV~lSATl~n~~dl~~wl~~~~------~~i~~f~~~~---------------------------rpv~l~~-- 1542 (2158)
.++.++++|||++|+..+..|+.... ....++...+ |.+....
T Consensus 660 --i~CP~L~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~l~v~n~~~e~n~~yl~~~falgerai~~~~~~ 737 (1330)
T KOG0949|consen 660 --IPCPFLVLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELGLVVYNRMNEGNAYYLLKLFALGERAIIVSLRE 737 (1330)
T ss_pred --cCCCeeEEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhcceeeccCCCCcchHHHHHHhhchhhccchhhc
Confidence 27889999999999999999997210 0011111100 0000000
Q ss_pred --------EEecccc------------------cchHH------------------HHHhcC-----------------h
Q 000114 1543 --------HIQGVDI------------------TNFEA------------------RMQAMT-----------------K 1561 (2158)
Q Consensus 1543 --------~i~~~~~------------------~~~~~------------------~~~~~~-----------------k 1561 (2158)
.+..+.. ..+.. ....+. +
T Consensus 738 ~~~s~dd~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k~~~e~~r~~~~l~~~f~e~s~~q~kik~~~ki~~k 817 (1330)
T KOG0949|consen 738 LSESEDDNVVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKKEVGEYGRHLLELFQGFIEDSLTQKQIKYVYKLQTK 817 (1330)
T ss_pred cccCCCCceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheechHHHHHHHHHHHHHHhhhcChHHHHHHHHHHhhhh
Confidence 0000000 00000 000000 0
Q ss_pred HH---------------HHHHHH-----hHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcc-----------------
Q 000114 1562 PT---------------FTAIVQ-----HAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQ----------------- 1604 (2158)
Q Consensus 1562 ~~---------------~~~i~~-----~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~----------------- 1604 (2158)
++ .+.++. +-...-|+|+|-..|..|+.+|......+......
T Consensus 818 ~Vnkqle~~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcekla~kv~~~Le~~e~Ee~k~k~m~k~kk~~~~a 897 (1330)
T KOG0949|consen 818 EVNKQLESVVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEKLALKVHRQLESMEMEEKKDKLMEKMKKEAKRA 897 (1330)
T ss_pred hhhhHhhhcccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 00 000000 00234589999999998887776553221100000
Q ss_pred ---------------------------cc---cccCC----CcccchhhHhhh--hHHHHHHHhcccEEEecCCCCHHHH
Q 000114 1605 ---------------------------KS---AFLLW----PAEEVEPFIDNI--QEEMLKATLRHGVGYLHEGLNKTDQ 1648 (2158)
Q Consensus 1605 ---------------------------~~---~~l~~----~~~~l~~~~~~i--~d~~L~~~l~~gv~~~H~~l~~~dR 1648 (2158)
.. .|+.. +...++.....+ .+..+...+-.|||+||+||....|
T Consensus 898 ~~r~Kt~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~~~~~~g~~~~~~id~lyRGiG~HHaglNr~yR 977 (1330)
T KOG0949|consen 898 RDREKTKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEEETKFIGNTDFEFIDMLYRGIGVHHAGLNRKYR 977 (1330)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhhhccccCCCcHHHHHHHHhcccccccccchHHH
Confidence 00 00000 000011000011 2456777888999999999999999
Q ss_pred HHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC
Q 000114 1649 EVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1649 ~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~ 1728 (2158)
..|+-+|+.|..+||+||.+++-|||.|+.+||..|.. .-.++..|.||+|||||.|||..|.++.|--+.
T Consensus 978 ~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDs---------LQL~plny~QmaGRAGRRGFD~lGnV~FmgiP~ 1048 (1330)
T KOG0949|consen 978 SLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDS---------LQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIPR 1048 (1330)
T ss_pred HHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccc---------cccCchhHHhhhccccccccccccceEEEeCcH
Confidence 99999999999999999999999999999999985532 345788999999999999999999999886554
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=278.59 Aligned_cols=319 Identities=16% Similarity=0.135 Sum_probs=214.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.|+++|..+++.++.|+ |+.+.||+|||++|.+|++..... +..+++++||+.||.|.++.+..++
T Consensus 103 ~p~~VQ~~~~~~ll~G~---Iae~~TGeGKTla~~lp~~~~al~-----------G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR---LAEMQTGEGKTLTATLPAGTAALA-----------GLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred CCChHHHHHHHHHhCCC---eeeeeCCCCcHHHHHHHHHHHhhc-----------CCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 67899999999998875 999999999999999999987653 3479999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCHh-hhccccEEEcchhHH--HHHHhccC----------------------CCccccccceEEe
Q 000114 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSG----------------------DRTYTQLVKLLII 629 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPekl--d~l~r~~~----------------------~~~~l~~v~lIIi 629 (2158)
..+|++|+.++|+.+...+ ....++|+|+|...+ |.|.-+.. .......+.+.||
T Consensus 169 ~~lGlsv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIv 248 (656)
T PRK12898 169 EALGLTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIV 248 (656)
T ss_pred hhcCCEEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEe
Confidence 9999999999999764332 346889999999886 55433321 1123455788999
Q ss_pred ecccccc-c-CC----------hh---hHHHHHHHHHHHHhh--------------------------------------
Q 000114 630 DEIHLLH-D-NR----------GP---VLESIVARTVRQIET-------------------------------------- 656 (2158)
Q Consensus 630 DEaH~l~-d-~r----------g~---~le~iv~r~~~~~~~-------------------------------------- 656 (2158)
||+|.++ | .+ .. .+-..+.++...+..
T Consensus 249 DEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~ 328 (656)
T PRK12898 249 DEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAV 328 (656)
T ss_pred ecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccch
Confidence 9999652 2 11 11 000000001000000
Q ss_pred ---------------c-------------------------------------------------------------ccc
Q 000114 657 ---------------T-------------------------------------------------------------KEH 660 (2158)
Q Consensus 657 ---------------~-------------------------------------------------------------~~~ 660 (2158)
. ..-
T Consensus 329 ~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y 408 (656)
T PRK12898 329 RREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRY 408 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhh
Confidence 0 001
Q ss_pred ccEEEEccccCCh-HHHHHHHhccccCceEEecCCccccccee--EEEeeccCChhHHHHHhhHHHHHHHHHH-hCCCeE
Q 000114 661 IRLVGLSATLPNY-EDVALFLRVNLEKGLFYFDNSYRPVPLSQ--QYIGIQVKKPLQRFQLMNDLCYEKVVAV-AGKHQV 736 (2158)
Q Consensus 661 ~riv~lSATlpn~-~dv~~~l~~~~~~~~~~f~~~~rpv~l~~--~~~~~~~~~~~~~~~~l~~~~~~~i~~~-~~~~~v 736 (2158)
.++.|||||++.. +++..+.+.. +...+..+|..-.. .++..+ ...+...+... +... ..+.++
T Consensus 409 ~kl~GmTGTa~~~~~El~~~y~l~-----vv~IPt~kp~~r~~~~~~v~~t---~~~K~~aL~~~----i~~~~~~~~pv 476 (656)
T PRK12898 409 LRLAGMTGTAREVAGELWSVYGLP-----VVRIPTNRPSQRRHLPDEVFLT---AAAKWAAVAAR----VRELHAQGRPV 476 (656)
T ss_pred HHHhcccCcChHHHHHHHHHHCCC-----eEEeCCCCCccceecCCEEEeC---HHHHHHHHHHH----HHHHHhcCCCE
Confidence 2677888887642 2333333322 12233444432111 111111 22233333322 2222 236789
Q ss_pred EEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHH
Q 000114 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816 (2158)
Q Consensus 737 LVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F 816 (2158)
||||+|++.++.++..|...++. +..+||.+...++.. ..|
T Consensus 477 LIft~t~~~se~L~~~L~~~gi~-------------------------------------~~~Lhg~~~~rE~~i--i~~ 517 (656)
T PRK12898 477 LVGTRSVAASERLSALLREAGLP-------------------------------------HQVLNAKQDAEEAAI--VAR 517 (656)
T ss_pred EEEeCcHHHHHHHHHHHHHCCCC-------------------------------------EEEeeCCcHHHHHHH--HHH
Confidence 99999999999999999876543 345599876555544 455
Q ss_pred hCCCceEEEechhhhhccCCC---ceE-----EEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCC
Q 000114 817 GDGHVQVLVSTATLAWGVNLP---AHT-----VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2158)
Q Consensus 817 ~~g~i~VLVaT~tla~GVdlP---~v~-----vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2158)
+.+..+|+|||++++||+|+| ++. +||+ |+.+. |...|.||+|||||.| ..|.++.+.+.
T Consensus 518 ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~----~d~P~------s~r~y~hr~GRTGRqG--~~G~s~~~is~ 585 (656)
T PRK12898 518 AGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVIL----TERHD------SARIDRQLAGRCGRQG--DPGSYEAILSL 585 (656)
T ss_pred cCCCCcEEEEccchhcccCcCCccchhhcCCCEEEE----cCCCC------CHHHHHHhcccccCCC--CCeEEEEEech
Confidence 555567999999999999999 665 8998 66655 6778999999999987 67999999887
Q ss_pred Cc
Q 000114 889 SE 890 (2158)
Q Consensus 889 ~~ 890 (2158)
.+
T Consensus 586 eD 587 (656)
T PRK12898 586 ED 587 (656)
T ss_pred hH
Confidence 54
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-25 Score=311.90 Aligned_cols=336 Identities=18% Similarity=0.200 Sum_probs=210.9
Q ss_pred HHHHHhc---CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH
Q 000114 1331 LYEALYQ---GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2158)
Q Consensus 1331 ~~~~l~~---gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~ 1407 (2158)
.+..+|. || .|+++|.++++.++.+.+ ++++||||||||++++++.+.... .+. +++||+||++|+.|++
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d-~li~APTGsGKTl~~~~~al~~~~---~g~--~aLVl~PTreLa~Qi~ 139 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKS-FSIVAPTGMGKSTFGAFIALFLAL---KGK--KCYIILPTTLLVKQTV 139 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCC-EEEEEcCCCCHHHHHHHHHHHHHh---cCC--eEEEEECHHHHHHHHH
Confidence 3444443 58 699999999999999665 999999999999977666654422 233 8999999999999999
Q ss_pred HHHHHHhcCC--CCcEEEEEcCCcchhhh-----ccc--CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC
Q 000114 1408 RDWEIKFGQG--LGMRVVELTGETAMDLK-----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2158)
Q Consensus 1408 ~~~~~~f~~~--~g~~v~~ltG~~~~~~~-----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~ 1478 (2158)
+.++. ++.. .++++..++|+.+...+ .+. ..+|+|+||+++....... ...+++++||||||++..
T Consensus 140 ~~l~~-l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l----~~~~i~~iVVDEAD~ml~ 214 (1638)
T PRK14701 140 EKIES-FCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM----KHLKFDFIFVDDVDAFLK 214 (1638)
T ss_pred HHHHH-HHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----hhCCCCEEEEECceeccc
Confidence 99994 4443 35678888898775532 222 3699999999876654431 126799999999999975
Q ss_pred CCCCh----------HHHHHH----------------------HHHHHHhhcCCCce-EEEeccCCCChHHHHHHhccCC
Q 000114 1479 QGGPV----------LEVIVS----------------------RMRYIASQVENKIR-IVALSTSLANAKDLGEWIGATS 1525 (2158)
Q Consensus 1479 ~~g~~----------~e~~is----------------------rl~~i~~~~~~~~r-iV~lSATl~n~~dl~~wl~~~~ 1525 (2158)
+ |.. .+.+.. ++......++...+ ++.+|||++...+...++....
T Consensus 215 ~-~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l 293 (1638)
T PRK14701 215 A-SKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELL 293 (1638)
T ss_pred c-ccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCe
Confidence 3 111 111111 11111112234445 5779999986555555553211
Q ss_pred CceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHH---HHHHHHHHhhcccCC
Q 000114 1526 HGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYV---RLTAVDLMTYSSMDG 1602 (2158)
Q Consensus 1526 ~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~---~~~a~~L~~~~~~~~ 1602 (2158)
.|..... ++ .+....+.+....... +.....+... .+.++||||+|++.+ +.++..|..
T Consensus 294 --~f~v~~~-~~-~lr~i~~~yi~~~~~~------k~~L~~ll~~--~g~~gIVF~~t~~~~e~ae~la~~L~~------ 355 (1638)
T PRK14701 294 --GFEVGSG-RS-ALRNIVDVYLNPEKII------KEHVRELLKK--LGKGGLIFVPIDEGAEKAEEIEKYLLE------ 355 (1638)
T ss_pred --EEEecCC-CC-CCCCcEEEEEECCHHH------HHHHHHHHHh--CCCCeEEEEeccccchHHHHHHHHHHH------
Confidence 1222211 11 1111111111011111 0112222232 256899999998864 666655521
Q ss_pred cccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEec----CccccccCCCc-
Q 000114 1603 DQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMS----SSMCWGVPLTA- 1677 (2158)
Q Consensus 1603 ~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT----~~la~Gvdlp~- 1677 (2158)
.+..+..+||+ |..+++.|++|+++||||| ++++||||+|.
T Consensus 356 -----------------------------~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~ 401 (1638)
T PRK14701 356 -----------------------------DGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPER 401 (1638)
T ss_pred -----------------------------CCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCc
Confidence 34568899995 8899999999999999999 48999999998
Q ss_pred cEEEEecceeecCCCCcCcCCCHH-------------HHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhhCC
Q 000114 1678 HLVVVMGTQYYDGQENAHTDYPVT-------------DLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDA 1740 (2158)
Q Consensus 1678 ~~vVI~gt~~yd~~~~~~~~~s~~-------------~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~~~ 1740 (2158)
+++|| +|+....+ +++. -.+++.|||||.| ..+.++...........++++.+.
T Consensus 402 Vryvi----~~~~Pk~~---~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g--~~~~~~~~~~~~~~~~~~~~l~~~ 468 (1638)
T PRK14701 402 IRFAV----FYGVPKFR---FRVDLEDPTIYRILGLLSEILKIEEELKEG--IPIEGVLDVFPEDVEFLRSILKDE 468 (1638)
T ss_pred cCEEE----EeCCCCCC---cchhhcccchhhhhcchHHHHHhhhhcccC--CcchhHHHhHHHHHHHHHHHhccH
Confidence 88888 33322111 1333 2456679999987 344454333344455666666553
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-24 Score=296.91 Aligned_cols=328 Identities=22% Similarity=0.275 Sum_probs=218.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
.-+++++|.+++..++++ |+++++|||+|||++|.+++...+.. +++ ++|||+|+++|+.|+.+.+++.++ ..
T Consensus 13 ~~~~r~yQ~~~~~~~l~~--n~lv~~ptG~GKT~~a~~~i~~~l~~--~~~--~vLvl~Pt~~L~~Q~~~~~~~~~~-~~ 85 (773)
T PRK13766 13 TIEARLYQQLLAATALKK--NTLVVLPTGLGKTAIALLVIAERLHK--KGG--KVLILAPTKPLVEQHAEFFRKFLN-IP 85 (773)
T ss_pred cCCccHHHHHHHHHHhcC--CeEEEcCCCccHHHHHHHHHHHHHHh--CCC--eEEEEeCcHHHHHHHHHHHHHHhC-CC
Confidence 457899999999988874 79999999999999999998887743 445 999999999999999999986554 23
Q ss_pred CcEEEEEcCCcchhh--hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHh
Q 000114 1419 GMRVVELTGETAMDL--KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIAS 1496 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~~--~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~ 1496 (2158)
+.++..++|+.+... +.+..++|+|+||+.+...+.. .+..+.+++++||||||++.+.. .+..+..+..
T Consensus 86 ~~~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~~~liVvDEaH~~~~~~--~~~~i~~~~~---- 157 (773)
T PRK13766 86 EEKIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIA--GRISLEDVSLLIFDEAHRAVGNY--AYVYIAERYH---- 157 (773)
T ss_pred CceEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHc--CCCChhhCcEEEEECCccccccc--cHHHHHHHHH----
Confidence 457888999877642 3456789999999988654432 34457889999999999886433 2222333222
Q ss_pred hcCCCceEEEeccCCCC-hHHH---HHHhccCCCceE-ecCCCCcc----cccEE-EEe---------------------
Q 000114 1497 QVENKIRIVALSTSLAN-AKDL---GEWIGATSHGLF-NFPPGVRP----VPLEI-HIQ--------------------- 1545 (2158)
Q Consensus 1497 ~~~~~~riV~lSATl~n-~~dl---~~wl~~~~~~i~-~f~~~~rp----v~l~~-~i~--------------------- 1545 (2158)
......++++||||+.. ...+ ...|+.....+. .+.+...+ ..+.. .+.
T Consensus 158 ~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~ 237 (773)
T PRK13766 158 EDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLK 237 (773)
T ss_pred hcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHH
Confidence 12346789999999853 2233 333332211000 01111110 00000 000
Q ss_pred -----ccc--cc------ch-------------------------------------------------HHHHHh-----
Q 000114 1546 -----GVD--IT------NF-------------------------------------------------EARMQA----- 1558 (2158)
Q Consensus 1546 -----~~~--~~------~~-------------------------------------------------~~~~~~----- 1558 (2158)
+.. .. .. ...+..
T Consensus 238 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~ 317 (773)
T PRK13766 238 KLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSS 317 (773)
T ss_pred HHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhcccc
Confidence 000 00 00 000000
Q ss_pred --------------------------cChHHHHHHHHhH------hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccc
Q 000114 1559 --------------------------MTKPTFTAIVQHA------KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS 1606 (2158)
Q Consensus 1559 --------------------------~~k~~~~~i~~~~------~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~ 1606 (2158)
...+.+..+...+ .+++++||||++++.|..++..|..
T Consensus 318 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~---------- 387 (773)
T PRK13766 318 GGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEK---------- 387 (773)
T ss_pred CCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHh----------
Confidence 0001111111111 3567899999999999988876632
Q ss_pred cccCCCcccchhhHhhhhHHHHHHHhcccEEEe--------cCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCcc
Q 000114 1607 AFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYL--------HEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAH 1678 (2158)
Q Consensus 1607 ~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~--------H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~ 1678 (2158)
.+..+..+ |++|++.+|..+++.|++|.++|||||+++++|+|+|.+
T Consensus 388 -------------------------~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~ 442 (773)
T PRK13766 388 -------------------------EGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSV 442 (773)
T ss_pred -------------------------CCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccC
Confidence 11122333 446999999999999999999999999999999999999
Q ss_pred EEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCCh
Q 000114 1679 LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1679 ~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~ 1729 (2158)
.+|| +++.+.+...|+||+||+||.| .|.+++++....
T Consensus 443 ~~VI----------~yd~~~s~~r~iQR~GR~gR~~---~~~v~~l~~~~t 480 (773)
T PRK13766 443 DLVI----------FYEPVPSEIRSIQRKGRTGRQE---EGRVVVLIAKGT 480 (773)
T ss_pred CEEE----------EeCCCCCHHHHHHHhcccCcCC---CCEEEEEEeCCC
Confidence 9999 3445668999999999999965 578888877653
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=283.54 Aligned_cols=324 Identities=19% Similarity=0.205 Sum_probs=214.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
|+ .|+++|..+...+..| -|+.+.||+|||++|.+|++.....+ ..+.+++|++.||.|.+..+.
T Consensus 76 g~-~p~~vQl~~~~~l~~G---~Iaem~TGeGKTL~a~lp~~l~al~G-----------~~v~VvTpt~~LA~qd~e~~~ 140 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEG---NIAEMQTGEGKTLTATMPLYLNALEG-----------KGVHLITVNDYLAKRDAEEMG 140 (790)
T ss_pred CC-CCchHHHHhHHHHcCC---ceeeecCCCcchHHHHHHHHHHHHcC-----------CCeEEEeCCHHHHHHHHHHHH
Confidence 44 7899999998876554 39999999999999999998665543 369999999999999999999
Q ss_pred hhcccCCcEEEEEeCCCc-cC-HhhhccccEEEcchhHH--HHHHhcc---CCCccccccceEEeecccccc-c-CChh-
Q 000114 572 NRLQMYDVKVRELSGDQT-LT-RQQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLH-D-NRGP- 641 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~-~~-~~~~~~~~IiV~TPekl--d~l~r~~---~~~~~l~~v~lIIiDEaH~l~-d-~rg~- 641 (2158)
.++..+|++|+.++|+.+ .. ++....++|+++||..+ |.+..+. .....+..+.++||||||.++ | .+.|
T Consensus 141 ~l~~~lGl~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpl 220 (790)
T PRK09200 141 QVYEFLGLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPL 220 (790)
T ss_pred HHHhhcCCeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCce
Confidence 999999999999999987 32 23456799999999997 6555442 122456788999999999662 3 2322
Q ss_pred ----------hHHHHHHHHHHHHhhc-----ccccc--------------------------------------------
Q 000114 642 ----------VLESIVARTVRQIETT-----KEHIR-------------------------------------------- 662 (2158)
Q Consensus 642 ----------~le~iv~r~~~~~~~~-----~~~~r-------------------------------------------- 662 (2158)
.+-.+..++....... ....+
T Consensus 221 iisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~ 300 (790)
T PRK09200 221 IISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFK 300 (790)
T ss_pred eeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhh
Confidence 1111222222111100 01112
Q ss_pred -----------------------------------------------------------------EEEEccccCChHHHH
Q 000114 663 -----------------------------------------------------------------LVGLSATLPNYEDVA 677 (2158)
Q Consensus 663 -----------------------------------------------------------------iv~lSATlpn~~dv~ 677 (2158)
+.|||.|... .-.
T Consensus 301 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t--~~~ 378 (790)
T PRK09200 301 RDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKT--EEK 378 (790)
T ss_pred cCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChH--HHH
Confidence 2233333211 001
Q ss_pred HHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHH-HhCCCeEEEEecChHHHHHHHHHHHHH
Q 000114 678 LFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIRDT 756 (2158)
Q Consensus 678 ~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~~~ 756 (2158)
.|.... .- .+..-+..+|+.-...--.+.. ....+...+. ..+.. +..+.|+||||+|++.++.++..|...
T Consensus 379 e~~~~Y-~l-~v~~IPt~kp~~r~d~~~~i~~-~~~~K~~al~----~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~ 451 (790)
T PRK09200 379 EFFEVY-NM-EVVQIPTNRPIIRIDYPDKVFV-TLDEKYKAVI----EEVKERHETGRPVLIGTGSIEQSETFSKLLDEA 451 (790)
T ss_pred HHHHHh-CC-cEEECCCCCCcccccCCCeEEc-CHHHHHHHHH----HHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 111111 00 1111222333211100000000 1112222222 22222 234789999999999999999999876
Q ss_pred hhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCC
Q 000114 757 ALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNL 836 (2158)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdl 836 (2158)
++. +...||.+...++..+...+..| +|+|||++++||+|+
T Consensus 452 gi~-------------------------------------~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI 492 (790)
T PRK09200 452 GIP-------------------------------------HNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDI 492 (790)
T ss_pred CCC-------------------------------------EEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCC
Confidence 543 34569999999988888888777 799999999999999
Q ss_pred ---CceE-----EEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCc
Q 000114 837 ---PAHT-----VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2158)
Q Consensus 837 ---P~v~-----vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (2158)
|++. +||+ |+.+. |...|.||+|||||.| ..|.++.+++..+
T Consensus 493 ~l~~~V~~~GGL~VI~----~d~p~------s~r~y~qr~GRtGR~G--~~G~s~~~is~eD 542 (790)
T PRK09200 493 KLGEGVHELGGLAVIG----TERME------SRRVDLQLRGRSGRQG--DPGSSQFFISLED 542 (790)
T ss_pred CcccccccccCcEEEe----ccCCC------CHHHHHHhhccccCCC--CCeeEEEEEcchH
Confidence 7998 9999 66554 6778999999999987 6799999887654
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-25 Score=287.91 Aligned_cols=345 Identities=20% Similarity=0.222 Sum_probs=218.4
Q ss_pred EEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh
Q 000114 515 LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ 594 (2158)
Q Consensus 515 lv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~ 594 (2158)
|+.||||||||.+|+.++...+..+ .+++|++|+++|+.|++++|++.+ |..+..++|+.+...+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g-----------~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~ 66 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALG-----------KSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKL 66 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcC-----------CeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHH
Confidence 5789999999999987776665432 379999999999999999999876 46788899987654321
Q ss_pred -------hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc--CChhhHHHHHHHHHHHHhhccccccEEE
Q 000114 595 -------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD--NRGPVLESIVARTVRQIETTKEHIRLVG 665 (2158)
Q Consensus 595 -------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d--~rg~~le~iv~r~~~~~~~~~~~~riv~ 665 (2158)
....+|+|+|+..+ . ..+.++++|||||+|.... ..++.+.. |-.........+.++|+
T Consensus 67 ~~~~~~~~g~~~IVVGTrsal---f------~p~~~l~lIIVDEeh~~sykq~~~p~y~a---r~~a~~ra~~~~~~vil 134 (505)
T TIGR00595 67 QAWRKVKNGEILVVIGTRSAL---F------LPFKNLGLIIVDEEHDSSYKQEEGPRYHA---RDVAVYRAKKFNCPVVL 134 (505)
T ss_pred HHHHHHHcCCCCEEECChHHH---c------CcccCCCEEEEECCCccccccccCCCCcH---HHHHHHHHHhcCCCEEE
Confidence 23678999998853 1 3467899999999997653 33444321 11111122346889999
Q ss_pred EccccCChHHHHHHHhccccCceEEecCCc--ccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhC-CCeEEEEecC
Q 000114 666 LSATLPNYEDVALFLRVNLEKGLFYFDNSY--RPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAG-KHQVLIFVHS 742 (2158)
Q Consensus 666 lSATlpn~~dv~~~l~~~~~~~~~~f~~~~--rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~-~~~vLVFv~s 742 (2158)
+||| |..+.......... ........+ ++.| ...++...... ....+...+++.+.+... ++|+|||+|+
T Consensus 135 ~SAT-Psles~~~~~~g~~--~~~~l~~r~~~~~~p-~v~vid~~~~~---~~~~ls~~l~~~i~~~l~~g~qvLvflnr 207 (505)
T TIGR00595 135 GSAT-PSLESYHNAKQKAY--RLLVLTRRVSGRKPP-EVKLIDMRKEP---RQSFLSPELITAIEQTLAAGEQSILFLNR 207 (505)
T ss_pred EeCC-CCHHHHHHHhcCCe--EEeechhhhcCCCCC-eEEEEeccccc---ccCCccHHHHHHHHHHHHcCCcEEEEEeC
Confidence 9999 66555554432211 111111111 1111 22333322211 111234455566655554 6799999999
Q ss_pred hHHHHHHHHHHHHHhhcccccccccccCchhHHHH----------HhhhhccC--------------cchhhhhcc-CCe
Q 000114 743 RKETAKTARAIRDTALENDTLGRFLKEDSVSREIL----------QSHTDMVK--------------SNDLKDLLP-YGF 797 (2158)
Q Consensus 743 r~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~~--------------~~~l~~ll~-~gv 797 (2158)
|..+..+...=+..-..+......+..+....... ...+..+. .+.|+..++ ..|
T Consensus 208 rGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v 287 (505)
T TIGR00595 208 RGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARI 287 (505)
T ss_pred CcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcE
Confidence 98765544433333222221111111000000000 00011111 123444443 578
Q ss_pred EEecCCCCHHHH--HHHHHHHhCCCceEEEechhhhhccCCCceEEE--EecccccCCCCCccccCCHHHHHHhhcccCC
Q 000114 798 AIHHAGMTRGDR--QLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVI--IKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2158)
Q Consensus 798 ~~hHagl~~~~R--~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vV--I~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2158)
...|+.++...+ +.+++.|++|+++|||+|+++++|+|+|++++| ++.+...+.+..+..+-..+.|+|++|||||
T Consensus 288 ~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR 367 (505)
T TIGR00595 288 ARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGR 367 (505)
T ss_pred EEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCC
Confidence 889999987766 889999999999999999999999999999976 5666655556555566678899999999999
Q ss_pred CCCCCccEEEEEcCCCcHHHH
Q 000114 874 PQYDSYGEGIIITGHSELRYY 894 (2158)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y 894 (2158)
.+ ..|.+++.+...+...+
T Consensus 368 ~~--~~g~viiqt~~p~~~~~ 386 (505)
T TIGR00595 368 AE--DPGQVIIQTYNPNHPAI 386 (505)
T ss_pred CC--CCCEEEEEeCCCCCHHH
Confidence 65 67999999877664433
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=278.53 Aligned_cols=345 Identities=17% Similarity=0.184 Sum_probs=217.6
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcc
Q 000114 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575 (2158)
Q Consensus 496 l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~ 575 (2158)
++|+|.|++..+..... .++.++||+|||++|.+|++.....+ ..++|++|+++||.|.++.+..++.
T Consensus 69 lrpydVQlig~l~l~~G-~Iaem~TGeGKTLta~Lpa~l~aL~g-----------~~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQG-NIAEMKTGEGKTLTATMPLYLNALTG-----------KGAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred CCccHHHHHHHHHhcCC-ceeEecCCcchHHHHHHHHHHHhhcC-----------CceEEeCCCHHHHHHHHHHHHHHHh
Confidence 45555556655444444 69999999999999999987665432 2599999999999999999999999
Q ss_pred cCCcEEEEEeCCCc---cC---HhhhccccEEEcchhHH--HHHHhcc---CCCccccccceEEeecccccc-c-CChhh
Q 000114 576 MYDVKVRELSGDQT---LT---RQQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLH-D-NRGPV 642 (2158)
Q Consensus 576 ~~gi~v~~l~Gd~~---~~---~~~~~~~~IiV~TPekl--d~l~r~~---~~~~~l~~v~lIIiDEaH~l~-d-~rg~~ 642 (2158)
.+|++|+..+++.. .. .+....++|+++||+.+ |.+..+. .....+..+.++||||||.++ | .|.|.
T Consensus 137 ~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpl 216 (762)
T TIGR03714 137 WLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPL 216 (762)
T ss_pred hcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCe
Confidence 99999998877521 22 22345899999999997 5443321 122346789999999999773 2 12211
Q ss_pred -----------HHHHHHHHHHHHhhc-----cccc---------------------------------------------
Q 000114 643 -----------LESIVARTVRQIETT-----KEHI--------------------------------------------- 661 (2158)
Q Consensus 643 -----------le~iv~r~~~~~~~~-----~~~~--------------------------------------------- 661 (2158)
+-..+.++.+.+... ...-
T Consensus 217 iisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~ 296 (762)
T TIGR03714 217 VISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFK 296 (762)
T ss_pred eeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHh
Confidence 111121221111100 0011
Q ss_pred ----------------------------------------------------------------cEEEEccccCChHHHH
Q 000114 662 ----------------------------------------------------------------RLVGLSATLPNYEDVA 677 (2158)
Q Consensus 662 ----------------------------------------------------------------riv~lSATlpn~~dv~ 677 (2158)
++.|||.|.. ..-.
T Consensus 297 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~--~~~~ 374 (762)
T TIGR03714 297 RNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGK--VAEK 374 (762)
T ss_pred cCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCh--hHHH
Confidence 2333333321 1111
Q ss_pred HHHhccccCceEEecCCcccccceeE--EEeeccCChhHHHHHhhHHHHHHHHH-HhCCCeEEEEecChHHHHHHHHHHH
Q 000114 678 LFLRVNLEKGLFYFDNSYRPVPLSQQ--YIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIR 754 (2158)
Q Consensus 678 ~~l~~~~~~~~~~f~~~~rpv~l~~~--~~~~~~~~~~~~~~~l~~~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~ 754 (2158)
+|.... .--+..-+..+|+.-... .+.. ....+...+. +.+.+ +..+.|+||||+|+..++.++..|.
T Consensus 375 Ef~~iY--~l~v~~IPt~kp~~r~d~~d~i~~---~~~~K~~ai~----~~i~~~~~~~~pvLIft~s~~~se~ls~~L~ 445 (762)
T TIGR03714 375 EFIETY--SLSVVKIPTNKPIIRIDYPDKIYA---TLPEKLMATL----EDVKEYHETGQPVLLITGSVEMSEIYSELLL 445 (762)
T ss_pred HHHHHh--CCCEEEcCCCCCeeeeeCCCeEEE---CHHHHHHHHH----HHHHHHhhCCCCEEEEECcHHHHHHHHHHHH
Confidence 222111 111122233333321110 0111 1112222222 22222 2447899999999999999999998
Q ss_pred HHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhcc
Q 000114 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGV 834 (2158)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GV 834 (2158)
..++. +...||.+...+|..+...++.| +|+|||++++||+
T Consensus 446 ~~gi~-------------------------------------~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGt 486 (762)
T TIGR03714 446 REGIP-------------------------------------HNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGT 486 (762)
T ss_pred HCCCC-------------------------------------EEEecCCChHHHHHHHHHcCCCC--eEEEEcccccccc
Confidence 76543 34459999999998888877777 7999999999999
Q ss_pred CCC---------ceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHH----------HHH
Q 000114 835 NLP---------AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR----------YYL 895 (2158)
Q Consensus 835 dlP---------~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~----------~y~ 895 (2158)
|+| ++.||++ |++++ ...+ .||+|||||.| ..|.++.+++..+.- .+.
T Consensus 487 DI~l~~~v~~~GGL~vIit----~~~ps------~rid-~qr~GRtGRqG--~~G~s~~~is~eD~l~~~~~~~~~~~~~ 553 (762)
T TIGR03714 487 DIKLGKGVAELGGLAVIGT----ERMEN------SRVD-LQLRGRSGRQG--DPGSSQFFVSLEDDLIKRWSPSWLKKYY 553 (762)
T ss_pred CCCCCccccccCCeEEEEe----cCCCC------cHHH-HHhhhcccCCC--CceeEEEEEccchhhhhhcchHHHHHHH
Confidence 999 9999998 77775 3344 99999999987 779999998875421 122
Q ss_pred Hhhc--C----CCcccchhhHhhHHH
Q 000114 896 SLMN--Q----QLPIESQFVSKLADQ 915 (2158)
Q Consensus 896 ~ll~--~----~~pieS~l~~~l~d~ 915 (2158)
+.+. + ..||++.+.....++
T Consensus 554 ~~~~~~~~~~~~~~i~~~~~~~~i~~ 579 (762)
T TIGR03714 554 KKYSVKDSKLKPSALFKRRFRKIVEK 579 (762)
T ss_pred HHcCCCcccccCcccccHHHHHHHHH
Confidence 2221 1 267888876655443
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-26 Score=245.86 Aligned_cols=300 Identities=21% Similarity=0.276 Sum_probs=215.9
Q ss_pred ChhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000114 483 PEWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2158)
Q Consensus 483 p~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ka 561 (2158)
|+.++.+- .||++|..+|.+|||.++.|-+ ++..|..|.|||.+|.++-|+.+..-. +...+++++.||+
T Consensus 51 pellraivdcgfehpsevqhecipqailgmd-vlcqaksgmgktavfvl~tlqqiepv~--------g~vsvlvmchtre 121 (387)
T KOG0329|consen 51 PELLRAIVDCGFEHPSEVQHECIPQAILGMD-VLCQAKSGMGKTAVFVLATLQQIEPVD--------GQVSVLVMCHTRE 121 (387)
T ss_pred HHHHHHHHhccCCCchHhhhhhhhHHhhcch-hheecccCCCceeeeehhhhhhcCCCC--------CeEEEEEEeccHH
Confidence 55555555 7999999999999999999977 999999999999999999999986531 3568999999999
Q ss_pred HHHHHHHHHHhhcccC-CcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc
Q 000114 562 LVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2158)
Q Consensus 562 La~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d 637 (2158)
||-|+.+++.++.+.+ +++|..+.|+....+.. .+-++|+|+||+++..+.|... ..+++++.+|+|||+.+++
T Consensus 122 lafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~--l~lk~vkhFvlDEcdkmle 199 (387)
T KOG0329|consen 122 LAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRS--LNLKNVKHFVLDECDKMLE 199 (387)
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhcc--CchhhcceeehhhHHHHHH
Confidence 9999988877655543 78999999998876532 3467999999999988887764 5788999999999997754
Q ss_pred ---CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcc---cccceeEEEeeccCC
Q 000114 638 ---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR---PVPLSQQYIGIQVKK 711 (2158)
Q Consensus 638 ---~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~r---pv~l~~~~~~~~~~~ 711 (2158)
.|..+-| +.+.++..-|++.+|||+++ ++....+.....++-.|-.... --.++++|+..++..
T Consensus 200 ~lDMrRDvQE--------ifr~tp~~KQvmmfsatlsk--eiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~e 269 (387)
T KOG0329|consen 200 QLDMRRDVQE--------IFRMTPHEKQVMMFSATLSK--EIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENE 269 (387)
T ss_pred HHHHHHHHHH--------HhhcCcccceeeeeeeecch--hhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhh
Confidence 2332222 22446888999999999984 4433332222222222222111 123444555444433
Q ss_pred hhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhh
Q 000114 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (2158)
Q Consensus 712 ~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 791 (2158)
..+++.. +++...-+|++||+.|....
T Consensus 270 KNrkl~d--------LLd~LeFNQVvIFvKsv~Rl--------------------------------------------- 296 (387)
T KOG0329|consen 270 KNRKLND--------LLDVLEFNQVVIFVKSVQRL--------------------------------------------- 296 (387)
T ss_pred hhhhhhh--------hhhhhhhcceeEeeehhhhh---------------------------------------------
Confidence 3222221 23334467999999875530
Q ss_pred hccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhccc
Q 000114 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (2158)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (2158)
+ | .-+ +|||+.+.||+|+-.++.|||++.|-+ ...|+||+|||
T Consensus 297 -------------~----------f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~----------~DtYlHrv~rA 339 (387)
T KOG0329|consen 297 -------------S----------F---QKR-LVATDLFGRGMDIERVNIVFNYDMPED----------SDTYLHRVARA 339 (387)
T ss_pred -------------h----------h---hhh-hHHhhhhccccCcccceeeeccCCCCC----------chHHHHHhhhh
Confidence 0 2 113 899999999999999999999555544 44699999999
Q ss_pred CCCCCCCccEEEEEcCCCcHHHHH
Q 000114 872 GRPQYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 872 GR~g~d~~G~~iil~~~~~~~~y~ 895 (2158)
||-| +.|.+|.+.+..+....+
T Consensus 340 grfG--tkglaitfvs~e~da~iL 361 (387)
T KOG0329|consen 340 GRFG--TKGLAITFVSDENDAKIL 361 (387)
T ss_pred hccc--cccceeehhcchhhHHHh
Confidence 9955 889999999887655443
|
|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-25 Score=248.14 Aligned_cols=326 Identities=21% Similarity=0.295 Sum_probs=237.3
Q ss_pred hhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHH
Q 000114 485 WAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (2158)
Q Consensus 485 ~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~ 564 (2158)
.+++.| ..++|+|.|..+|...+.+.+ +++..|||.||++||.||.|-. + .-+++|+|..+|+.
T Consensus 85 ilk~~f-~lekfrplq~~ain~~ma~ed-~~lil~tgggkslcyqlpal~a-------d-------g~alvi~plislme 148 (695)
T KOG0353|consen 85 ILKEQF-HLEKFRPLQLAAINATMAGED-AFLILPTGGGKSLCYQLPALCA-------D-------GFALVICPLISLME 148 (695)
T ss_pred HHHHHh-hHHhcChhHHHHhhhhhccCc-eEEEEeCCCccchhhhhhHHhc-------C-------CceEeechhHHHHH
Confidence 345555 367899999999999998876 8889999999999999998853 1 25899999999999
Q ss_pred HHHHHHHhhcccCCcEEEEEeCCCccCHhh---------hccccEEEcchhHH---HHHHhccCCCccccccceEEeecc
Q 000114 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---------IEETQIIVTTPEKW---DIITRKSGDRTYTQLVKLLIIDEI 632 (2158)
Q Consensus 565 q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---------~~~~~IiV~TPekl---d~l~r~~~~~~~l~~v~lIIiDEa 632 (2158)
++.-.++++ |+....+....+..... .....+|..|||++ ..+..+.........+.+|-|||+
T Consensus 149 dqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidev 224 (695)
T KOG0353|consen 149 DQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEV 224 (695)
T ss_pred HHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecce
Confidence 988877764 67666666554433221 13567999999997 222222211123456789999999
Q ss_pred ccccc---CChhhHHHHHHHHHHHHhhccccccEEEEccccCC--hHHHHHHHhccccCceEEecCCcccccceeEEEee
Q 000114 633 HLLHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI 707 (2158)
Q Consensus 633 H~l~d---~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn--~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~ 707 (2158)
|+... ++.|.+..+ .-+.| ..++..++||+||..| ..|+...|... ..|.|...|....+...+..-
T Consensus 225 hccsqwghdfr~dy~~l-~ilkr----qf~~~~iigltatatn~vl~d~k~il~ie---~~~tf~a~fnr~nl~yev~qk 296 (695)
T KOG0353|consen 225 HCCSQWGHDFRPDYKAL-GILKR----QFKGAPIIGLTATATNHVLDDAKDILCIE---AAFTFRAGFNRPNLKYEVRQK 296 (695)
T ss_pred eehhhhCcccCcchHHH-HHHHH----hCCCCceeeeehhhhcchhhHHHHHHhHH---hhheeecccCCCCceeEeeeC
Confidence 98753 456666543 22222 3568899999999876 46777777653 457777777666666544422
Q ss_pred ccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcc
Q 000114 708 QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787 (2158)
Q Consensus 708 ~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 787 (2158)
+.. ...-... +...+.....+...||||-|+++|++++..|...|+...
T Consensus 297 p~n-~dd~~ed----i~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~-------------------------- 345 (695)
T KOG0353|consen 297 PGN-EDDCIED----IAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAG-------------------------- 345 (695)
T ss_pred CCC-hHHHHHH----HHHHhccccCCCcceEEEeccccHHHHHHHHHhcCcccc--------------------------
Confidence 221 1111111 112222233366789999999999999999998876543
Q ss_pred hhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHH-
Q 000114 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ- 866 (2158)
Q Consensus 788 ~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Q- 866 (2158)
.+|+.|.++||.-+-+.+..|+++|+|+|-.+.+|||-|+|++||+ .+.++ |+..|.|
T Consensus 346 -----------~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvih----hsl~k------sienyyqa 404 (695)
T KOG0353|consen 346 -----------AYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIH----HSLPK------SIENYYQA 404 (695)
T ss_pred -----------ccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEe----cccch------hHHHHHHH
Confidence 4599999999999999999999999999999999999999999999 44444 7788998
Q ss_pred ------------------------------------------hhcccCCCCCCCccEEEEEcCCCcHH
Q 000114 867 ------------------------------------------MLGRAGRPQYDSYGEGIIITGHSELR 892 (2158)
Q Consensus 867 ------------------------------------------r~GRAGR~g~d~~G~~iil~~~~~~~ 892 (2158)
-.|||||.+ ....||+++.-.+.-
T Consensus 405 sarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~--~~a~cilyy~~~dif 470 (695)
T KOG0353|consen 405 SARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDD--MKADCILYYGFADIF 470 (695)
T ss_pred HHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCC--CcccEEEEechHHHH
Confidence 789999976 668899988765543
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=298.76 Aligned_cols=303 Identities=18% Similarity=0.191 Sum_probs=194.2
Q ss_pred hHHHHHhc---CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHH
Q 000114 1330 PLYEALYQ---GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2158)
Q Consensus 1330 ~~~~~l~~---gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~ 1406 (2158)
..++++|. |+ .|+|+|.++++.++.+ +|++++||||||||.++ +++...+.. .+. +++||+||++|+.|+
T Consensus 67 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~g-~dv~i~ApTGsGKT~f~-l~~~~~l~~--~g~--~alIL~PTreLa~Qi 139 (1176)
T PRK09401 67 KEFEKFFKKKTGS-KPWSLQRTWAKRLLLG-ESFAIIAPTGVGKTTFG-LVMSLYLAK--KGK--KSYIIFPTRLLVEQV 139 (1176)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHHCC-CcEEEEcCCCCCHHHHH-HHHHHHHHh--cCC--eEEEEeccHHHHHHH
Confidence 34566664 45 8999999999999985 45999999999999754 444444433 233 999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEcCCcch---h----hhcc--cCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccccc
Q 000114 1407 YRDWEIKFGQGLGMRVVELTGETAM---D----LKLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1407 ~~~~~~~f~~~~g~~v~~ltG~~~~---~----~~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
++.++ .++...++.+..+.|+... . ...+ ..++|+|+||+++...... ....+++++||||||++.
T Consensus 140 ~~~l~-~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~----l~~~~~~~lVvDEaD~~L 214 (1176)
T PRK09401 140 VEKLE-KFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE----LPKKKFDFVFVDDVDAVL 214 (1176)
T ss_pred HHHHH-HHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh----ccccccCEEEEEChHHhh
Confidence 99999 5665567777777765431 1 1122 2469999999998766542 234569999999999987
Q ss_pred CCC----------CC---hHHHHHHHHH-------------HHHhhc----CCCceEEEeccCCCCh-HH---HHHHhcc
Q 000114 1478 GQG----------GP---VLEVIVSRMR-------------YIASQV----ENKIRIVALSTSLANA-KD---LGEWIGA 1523 (2158)
Q Consensus 1478 ~~~----------g~---~~e~~isrl~-------------~i~~~~----~~~~riV~lSATl~n~-~d---l~~wl~~ 1523 (2158)
++. |. .++.++..++ .+...+ +...|++++|||.+.. .. +.+.++
T Consensus 215 ~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~- 293 (1176)
T PRK09401 215 KSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLG- 293 (1176)
T ss_pred hcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccce-
Confidence 521 22 1222222221 111111 1267899999999642 11 122222
Q ss_pred CCCceEecCCCC-cccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHH---HHHHHHHHHhhcc
Q 000114 1524 TSHGLFNFPPGV-RPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKY---VRLTAVDLMTYSS 1599 (2158)
Q Consensus 1524 ~~~~i~~f~~~~-rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~---~~~~a~~L~~~~~ 1599 (2158)
+...... ..-.+...+...+ . . ......+... -+.++||||++++. |+.++..|..
T Consensus 294 -----~~v~~~~~~~rnI~~~yi~~~--~---k-----~~~L~~ll~~--l~~~~LIFv~t~~~~~~ae~l~~~L~~--- 353 (1176)
T PRK09401 294 -----FEVGSPVFYLRNIVDSYIVDE--D---S-----VEKLVELVKR--LGDGGLIFVPSDKGKEYAEELAEYLED--- 353 (1176)
T ss_pred -----EEecCcccccCCceEEEEEcc--c---H-----HHHHHHHHHh--cCCCEEEEEecccChHHHHHHHHHHHH---
Confidence 1111100 0001111111100 1 0 1111222222 24689999999877 8888765522
Q ss_pred cCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEe----cCccccccCC
Q 000114 1600 MDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVM----SSSMCWGVPL 1675 (2158)
Q Consensus 1600 ~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVa----T~~la~Gvdl 1675 (2158)
.+..+..+||+| ++ .++.|++|+++|||| |++++||||+
T Consensus 354 --------------------------------~gi~v~~~hg~l----~~-~l~~F~~G~~~VLVatas~tdv~aRGIDi 396 (1176)
T PRK09401 354 --------------------------------LGINAELAISGF----ER-KFEKFEEGEVDVLVGVASYYGVLVRGIDL 396 (1176)
T ss_pred --------------------------------CCCcEEEEeCcH----HH-HHHHHHCCCCCEEEEecCCCCceeecCCC
Confidence 345689999999 22 349999999999999 6899999999
Q ss_pred Cc-cEEEEecceeecCCCCcCcCC------CHHHHHHhhccCCC
Q 000114 1676 TA-HLVVVMGTQYYDGQENAHTDY------PVTDLLQMMGHASR 1712 (2158)
Q Consensus 1676 p~-~~vVI~gt~~yd~~~~~~~~~------s~~~~lQr~GRaGR 1712 (2158)
|. +++|| |+++|. ....+.|++||+-+
T Consensus 397 P~~IryVI----------~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 397 PERIRYAI----------FYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred CcceeEEE----------EeCCCCEEEeccccccCHHHHHHHHh
Confidence 98 78888 333332 34668999999864
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-24 Score=277.66 Aligned_cols=315 Identities=13% Similarity=0.196 Sum_probs=202.7
Q ss_pred CCCCHHHHHHHHHHhcCC--CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1340 KHFNPIQTQVFTVLYNTD--DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~--~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
..++|+|.+++..++..+ .+.+|++|||+|||++++.++. .+ .+ ++|||||+..|+.|+.+.+.+ +...
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l-----~k--~tLILvps~~Lv~QW~~ef~~-~~~l 324 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV-----KK--SCLVLCTSAVSVEQWKQQFKM-WSTI 324 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh-----CC--CEEEEeCcHHHHHHHHHHHHH-hcCC
Confidence 368999999999998644 4789999999999999976554 23 23 799999999999999999984 4333
Q ss_pred CCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhh------ccccccceeEEEecccccccCCCCChHHHHHHHH
Q 000114 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK------QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRM 1491 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~------~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl 1491 (2158)
....+..++|+.... ......|+|+|++.+....++.. ....-..++++|+||||++.. +.+..++.
T Consensus 325 ~~~~I~~~tg~~k~~--~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA---~~fr~il~-- 397 (732)
T TIGR00603 325 DDSQICRFTSDAKER--FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA---AMFRRVLT-- 397 (732)
T ss_pred CCceEEEEecCcccc--cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH---HHHHHHHH--
Confidence 345678888864332 12346899999987643222110 011124688999999999852 22322222
Q ss_pred HHHHhhcCCCceEEEeccCCCChH----HHHHHhccCCCceEecCC-------CCcccccEEEEecccccch--------
Q 000114 1492 RYIASQVENKIRIVALSTSLANAK----DLGEWIGATSHGLFNFPP-------GVRPVPLEIHIQGVDITNF-------- 1552 (2158)
Q Consensus 1492 ~~i~~~~~~~~riV~lSATl~n~~----dl~~wl~~~~~~i~~f~~-------~~rpv~l~~~i~~~~~~~~-------- 1552 (2158)
.+. ....+|||||+...+ ++...+|.. +|.... ..-++.........+...+
T Consensus 398 -----~l~-a~~RLGLTATP~ReD~~~~~L~~LiGP~---vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~ 468 (732)
T TIGR00603 398 -----IVQ-AHCKLGLTATLVREDDKITDLNFLIGPK---LYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENS 468 (732)
T ss_pred -----hcC-cCcEEEEeecCcccCCchhhhhhhcCCe---eeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcc
Confidence 222 345699999996432 232223322 222110 0111111111111111101
Q ss_pred --HHHHHhcChHHHHH---HHH-hHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHH
Q 000114 1553 --EARMQAMTKPTFTA---IVQ-HAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEE 1626 (2158)
Q Consensus 1553 --~~~~~~~~k~~~~~---i~~-~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~ 1626 (2158)
...+..++...+.. +.. +-..+.++||||.+...+..++..|
T Consensus 469 ~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-------------------------------- 516 (732)
T TIGR00603 469 RKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-------------------------------- 516 (732)
T ss_pred hhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc--------------------------------
Confidence 11122344444333 222 2136789999999998877666332
Q ss_pred HHHHHhcccEEEecCCCCHHHHHHHHHHHHcC-CceEEEecCccccccCCCccEEEEecceeecCCCCcCcC-CCHHHHH
Q 000114 1627 MLKATLRHGVGYLHEGLNKTDQEVVSALFEAG-KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD-YPVTDLL 1704 (2158)
Q Consensus 1627 ~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g-~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~-~s~~~~l 1704 (2158)
++.++||+++..+|..+++.|++| .+++||+|+++.+|+|+|.+.+||. + ..+ -|..+|+
T Consensus 517 --------~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~----~------s~~~gS~~q~i 578 (732)
T TIGR00603 517 --------GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ----I------SSHYGSRRQEA 578 (732)
T ss_pred --------CCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEE----e------CCCCCCHHHHH
Confidence 356789999999999999999875 8899999999999999999999982 2 222 2789999
Q ss_pred HhhccCCCCCCCCc-----eEEEEEecCCh
Q 000114 1705 QMMGHASRPLLDNS-----GKCVILCHAPR 1729 (2158)
Q Consensus 1705 Qr~GRaGR~g~d~~-----G~~iil~~~~~ 1729 (2158)
||+||++|++.++. +..+.++....
T Consensus 579 QRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 579 QRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred HHhcccccCCCCCccccccceEEEEecCCc
Confidence 99999999974433 23355665553
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=276.67 Aligned_cols=375 Identities=18% Similarity=0.186 Sum_probs=230.9
Q ss_pred EEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh-----c
Q 000114 1361 LVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK-----L 1435 (2158)
Q Consensus 1361 li~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~-----~ 1435 (2158)
|+.||||||||.+|+.++...+.. ++ +++|++|+++|+.|+++++++.|+ .++..++|+.+...+ .
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---g~--~vLvlvP~i~L~~Q~~~~l~~~f~----~~v~vlhs~~~~~er~~~~~~ 71 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---GK--SVLVLVPEIALTPQMIQRFKYRFG----SQVAVLHSGLSDSEKLQAWRK 71 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---CC--eEEEEeCcHHHHHHHHHHHHHHhC----CcEEEEECCCCHHHHHHHHHH
Confidence 478999999999997766555543 44 899999999999999999998774 468888987765421 1
Q ss_pred c--cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC--CCCChHHHH-HHHHHHHHhhcCCCceEEEeccC
Q 000114 1436 L--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG--QGGPVLEVI-VSRMRYIASQVENKIRIVALSTS 1510 (2158)
Q Consensus 1436 l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~--~~g~~~e~~-isrl~~i~~~~~~~~riV~lSAT 1510 (2158)
+ ..++|||+|+..+. ..++++++|||||+|...- ..++.|..- +..++. . ..+.++|++|||
T Consensus 72 ~~~g~~~IVVGTrsalf---------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra---~-~~~~~vil~SAT 138 (505)
T TIGR00595 72 VKNGEILVVIGTRSALF---------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRA---K-KFNCPVVLGSAT 138 (505)
T ss_pred HHcCCCCEEECChHHHc---------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHH---H-hcCCCEEEEeCC
Confidence 1 24589999987542 2478899999999998764 234444220 111221 1 247899999999
Q ss_pred CCChHHHHHHhccCCCceEecC--CCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHH
Q 000114 1511 LANAKDLGEWIGATSHGLFNFP--PGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVR 1588 (2158)
Q Consensus 1511 l~n~~dl~~wl~~~~~~i~~f~--~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~ 1588 (2158)
+ ..+.+....... ....... +..++.| .+.+....... ....+...++..+.+.+..++++|||+|+|..+-
T Consensus 139 P-sles~~~~~~g~-~~~~~l~~r~~~~~~p-~v~vid~~~~~---~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~ 212 (505)
T TIGR00595 139 P-SLESYHNAKQKA-YRLLVLTRRVSGRKPP-EVKLIDMRKEP---RQSFLSPELITAIEQTLAAGEQSILFLNRRGYSK 212 (505)
T ss_pred C-CHHHHHHHhcCC-eEEeechhhhcCCCCC-eEEEEeccccc---ccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCC
Confidence 4 555444332211 1111111 1112222 22222211111 0023455677888888888999999999987532
Q ss_pred HHHHH------------------------HHhhcccCCcccccccCCCcccchhh---HhhhhHHHHHHHhcccEEEecC
Q 000114 1589 LTAVD------------------------LMTYSSMDGDQKSAFLLWPAEEVEPF---IDNIQEEMLKATLRHGVGYLHE 1641 (2158)
Q Consensus 1589 ~~a~~------------------------L~~~~~~~~~~~~~~l~~~~~~l~~~---~~~i~d~~L~~~l~~gv~~~H~ 1641 (2158)
.+.-. .|.+|.........+..|....+... .+++.+..-+.+.+..|..+|+
T Consensus 213 ~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~ 292 (505)
T TIGR00595 213 NLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDS 292 (505)
T ss_pred eeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEec
Confidence 21111 01222211111111223333333322 3444444444444568999999
Q ss_pred CCCHHHH--HHHHHHHHcCCceEEEecCccccccCCCccEEEE-eccee--ecCCCCcCcCCCHHHHHHhhccCCCCCCC
Q 000114 1642 GLNKTDQ--EVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV-MGTQY--YDGQENAHTDYPVTDLLQMMGHASRPLLD 1716 (2158)
Q Consensus 1642 ~l~~~dR--~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI-~gt~~--yd~~~~~~~~~s~~~~lQr~GRaGR~g~d 1716 (2158)
+++...+ +.+++.|++|+++|||+|+.+++|+|+|++.+|+ .+... +.+. -+........|+|++|||||.+
T Consensus 293 d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd-~ra~E~~~~ll~q~~GRagR~~-- 369 (505)
T TIGR00595 293 DTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPD-FRAAERGFQLLTQVAGRAGRAE-- 369 (505)
T ss_pred ccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcc-cchHHHHHHHHHHHHhccCCCC--
Confidence 9987766 8999999999999999999999999999988653 33221 0000 0001113678999999999975
Q ss_pred CceEEEEEecCChHHHHHHHhhCCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCC
Q 000114 1717 NSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGV 1795 (2158)
Q Consensus 1717 ~~G~~iil~~~~~~~~~~k~l~~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~ 1795 (2158)
..|.+++.+..++...++.+... |--.|.....-.|+....|.|..+..+
T Consensus 370 ~~g~viiqt~~p~~~~~~~~~~~-----------------------------d~~~f~~~el~~R~~~~~PPf~~l~~i 419 (505)
T TIGR00595 370 DPGQVIIQTYNPNHPAIQAALTG-----------------------------DYEAFYEQELAQRRALNYPPFTRLIRL 419 (505)
T ss_pred CCCEEEEEeCCCCCHHHHHHHhC-----------------------------CHHHHHHHHHHHHHHcCCCchhcEEEE
Confidence 78999999988764443332211 112344445556777888999887644
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-23 Score=247.58 Aligned_cols=451 Identities=17% Similarity=0.179 Sum_probs=301.0
Q ss_pred HHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEE
Q 000114 1345 IQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVE 1424 (2158)
Q Consensus 1345 iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ 1424 (2158)
.+.+.+..+ ..++.|+|.+.||||||......++ ......+| .+-+..|.|.-|..+++++...++..+|..|+.
T Consensus 360 ~R~~ll~~i-r~n~vvvivgETGSGKTTQl~QyL~--edGY~~~G--mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGY 434 (1042)
T KOG0924|consen 360 CRDQLLSVI-RENQVVVIVGETGSGKTTQLAQYLY--EDGYADNG--MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGY 434 (1042)
T ss_pred HHHHHHHHH-hhCcEEEEEecCCCCchhhhHHHHH--hcccccCC--eeeecCchHHHHHHHHHHHHHHhCCccccccce
Confidence 445555544 3467799999999999976433333 22222345 788999999999999999998887666766654
Q ss_pred EcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceE
Q 000114 1425 LTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRI 1504 (2158)
Q Consensus 1425 ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~ri 1504 (2158)
-..-... .-....|-++|.+.+ +|.......+.+.+.||+||||. +.-....++.-++...+. ..+.++
T Consensus 435 sIRFEdv---T~~~T~IkymTDGiL---LrEsL~d~~L~kYSviImDEAHE----RslNtDilfGllk~~lar-RrdlKl 503 (1042)
T KOG0924|consen 435 SIRFEDV---TSEDTKIKYMTDGIL---LRESLKDRDLDKYSVIIMDEAHE----RSLNTDILFGLLKKVLAR-RRDLKL 503 (1042)
T ss_pred EEEeeec---CCCceeEEEeccchH---HHHHhhhhhhhheeEEEechhhh----cccchHHHHHHHHHHHHh-hccceE
Confidence 3211000 013457899999874 44444466789999999999993 223344455555555443 458999
Q ss_pred EEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhH-hcCCCEEEEecC
Q 000114 1505 VALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNEKPALVFVPS 1583 (2158)
Q Consensus 1505 V~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~-~~~~~~IVFv~s 1583 (2158)
|..|||+ |++.++.|+|.-+ .|+. ..|..|+++.+...+..+|.... .+. .+.-++ .+.+.+|||.+.
T Consensus 504 iVtSATm-~a~kf~nfFgn~p--~f~I--pGRTyPV~~~~~k~p~eDYVeaa---vkq---~v~Ihl~~~~GdilIfmtG 572 (1042)
T KOG0924|consen 504 IVTSATM-DAQKFSNFFGNCP--QFTI--PGRTYPVEIMYTKTPVEDYVEAA---VKQ---AVQIHLSGPPGDILIFMTG 572 (1042)
T ss_pred EEeeccc-cHHHHHHHhCCCc--eeee--cCCccceEEEeccCchHHHHHHH---Hhh---heEeeccCCCCCEEEecCC
Confidence 9999998 8999999999433 3444 34677777777666555543321 111 111121 345779999999
Q ss_pred hHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEE
Q 000114 1584 RKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVC 1663 (2158)
Q Consensus 1584 r~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VL 1663 (2158)
+...+.++..+...+..-.. ...-...|..+++.|+..-+..+++.-..|..+++
T Consensus 573 qediE~t~~~i~~~l~ql~~-------------------------~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~I 627 (1042)
T KOG0924|consen 573 QEDIECTCDIIKEKLEQLDS-------------------------APTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCI 627 (1042)
T ss_pred CcchhHHHHHHHHHHHhhhc-------------------------CCCCceEEEeehhhCchhhhhhhcccCCCCceeEE
Confidence 98887777655432211000 00112348899999999999999999999999999
Q ss_pred EecCccccccCCCccEEEEe-c---ceeecCCCCc----CcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHH
Q 000114 1664 VMSSSMCWGVPLTAHLVVVM-G---TQYYDGQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKK 1735 (2158)
Q Consensus 1664 VaT~~la~Gvdlp~~~vVI~-g---t~~yd~~~~~----~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k 1735 (2158)
|||++++.++.+|++.+||- | .+.|+++.+. -+|+|-....||.|||||. +.|.|+-++... .|...
T Consensus 628 vATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt---~pG~cYRlYTe~--ay~~e 702 (1042)
T KOG0924|consen 628 VATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRT---GPGTCYRLYTED--AYKNE 702 (1042)
T ss_pred EeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCC---CCcceeeehhhh--HHHhh
Confidence 99999999999999999992 2 3568777653 4588889999999999995 599999998763 34444
Q ss_pred HhhCCCc--cccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccHHHHHHHHHHHHHH
Q 000114 1736 FLYDAFP--VESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTIS 1813 (2158)
Q Consensus 1736 ~l~~~~p--iES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~lve~~l~ 1813 (2158)
++..+.| ...+|.. .+.--.+.| .+ |.+.+.|+- .| ..+.+.+++.
T Consensus 703 ml~stvPEIqRTNl~n----vVLlLkslg----V~---dll~FdFmD-----~P----------------ped~~~~sly 750 (1042)
T KOG0924|consen 703 MLPSTVPEIQRTNLSN----VVLLLKSLG----VD---DLLKFDFMD-----PP----------------PEDNLLNSLY 750 (1042)
T ss_pred cccCCCchhhhcchhh----HHHHHHhcC----hh---hhhCCCcCC-----CC----------------HHHHHHHHHH
Confidence 5544333 3333322 222111222 12 344445542 22 2367888999
Q ss_pred HHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHhcCccccCCCCCcchHHHHHHH
Q 000114 1814 DLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRL 1890 (2158)
Q Consensus 1814 ~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L 1890 (2158)
.|...|+|. +.-..|++|+.|+.|+++|...+++..+-.-.+ ..+||.|+|.-+ -..+-.|+.|...-..+
T Consensus 751 ~Lw~LGAl~----~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc-~dEilsIvSmLS-vp~VF~rpker~eead~ 821 (1042)
T KOG0924|consen 751 QLWTLGALD----NTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGC-SDEILSIVSMLS-VPAVFYRPKEREEEADA 821 (1042)
T ss_pred HHHHhhccc----cCCccchhhHHhhhCCCCchHHHHHHHHhccCc-HHHHHHHHHHhc-ccceeeccccchhhhhh
Confidence 999999993 345667789999999999999999987555444 467777776533 13455676665444443
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=269.13 Aligned_cols=323 Identities=16% Similarity=0.133 Sum_probs=209.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.|+++|..+...+..| .|+.++||+|||++|.+|++-....+ ..+.+++|+..||.|.++.+..++
T Consensus 56 ~p~~vQlig~~~l~~G---~Iaem~TGeGKTLva~lpa~l~aL~G-----------~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 56 RPFDVQLIGGIALHKG---KIAEMKTGEGKTLTATLPAYLNALTG-----------KGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred CccchHHhhhhhhcCC---ceeeecCCCccHHHHHHHHHHHHHhC-----------CCEEEEcCCHHHHHHHHHHHHHHh
Confidence 5788888888765544 49999999999999999995443332 259999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCHh-hhccccEEEcchhHH--HHHHhcc---CCCccccccceEEeecccccc-c-CChhhHH--
Q 000114 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLH-D-NRGPVLE-- 644 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPekl--d~l~r~~---~~~~~l~~v~lIIiDEaH~l~-d-~rg~~le-- 644 (2158)
..+|++|+.++|+.+...+ ....++|+++||.++ |.+..+. .+...++.++++||||+|.++ | .|.|.+-
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg 201 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISG 201 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcC
Confidence 9999999999998775443 234689999999987 6665542 123456889999999999764 2 2322211
Q ss_pred ------HH---HHHHHHHHhh-----ccccccEEEE--------------------------------------------
Q 000114 645 ------SI---VARTVRQIET-----TKEHIRLVGL-------------------------------------------- 666 (2158)
Q Consensus 645 ------~i---v~r~~~~~~~-----~~~~~riv~l-------------------------------------------- 666 (2158)
.+ ...+.+.+.. ....-+-+.|
T Consensus 202 ~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~d 281 (745)
T TIGR00963 202 PAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVD 281 (745)
T ss_pred CCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 11 1111111110 0001122222
Q ss_pred -----------------------------------------------------------------ccccCChHHHHHHHh
Q 000114 667 -----------------------------------------------------------------SATLPNYEDVALFLR 681 (2158)
Q Consensus 667 -----------------------------------------------------------------SATlpn~~dv~~~l~ 681 (2158)
|.|... +-..|..
T Consensus 282 YiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~t--e~~E~~~ 359 (745)
T TIGR00963 282 YIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKT--EEEEFEK 359 (745)
T ss_pred EEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHH--HHHHHHH
Confidence 222210 0011111
Q ss_pred ccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhccc
Q 000114 682 VNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEND 761 (2158)
Q Consensus 682 ~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~ 761 (2158)
.. .- -+..-+..+|+.-...--.+. .....++.++ +.+....+..+.|+||||+|...++.++..|...++..
T Consensus 360 iY-~l-~vv~IPtnkp~~R~d~~d~i~-~t~~~k~~ai---~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~- 432 (745)
T TIGR00963 360 IY-NL-EVVVVPTNRPVIRKDLSDLVY-KTEEEKWKAV---VDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPH- 432 (745)
T ss_pred Hh-CC-CEEEeCCCCCeeeeeCCCeEE-cCHHHHHHHH---HHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCe-
Confidence 10 00 011112222211100000000 0111122222 11222223458899999999999999999998876443
Q ss_pred ccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCc---
Q 000114 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPA--- 838 (2158)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~--- 838 (2158)
..+||. +.+|+..+..|+.+...|+|||++++||+|++.
T Consensus 433 ------------------------------------~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V 474 (745)
T TIGR00963 433 ------------------------------------NVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEV 474 (745)
T ss_pred ------------------------------------EEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccch
Confidence 345887 789999999999999999999999999999998
Q ss_pred ----eEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCc
Q 000114 839 ----HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2158)
Q Consensus 839 ----v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (2158)
..+||+ |+.+. |...+.|+.|||||.| ..|.+..+.+..+
T Consensus 475 ~~~GGl~VI~----t~~p~------s~ri~~q~~GRtGRqG--~~G~s~~~ls~eD 518 (745)
T TIGR00963 475 KELGGLYVIG----TERHE------SRRIDNQLRGRSGRQG--DPGSSRFFLSLED 518 (745)
T ss_pred hhcCCcEEEe----cCCCC------cHHHHHHHhccccCCC--CCcceEEEEeccH
Confidence 558998 55554 6778999999999988 6798888887754
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=268.43 Aligned_cols=328 Identities=15% Similarity=0.118 Sum_probs=214.7
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.++|+|..+++.++.+. |..+.||+|||++|.+|++..... +. .+++++||++||.|.++.+. .+...+|+
T Consensus 103 ~p~~VQ~~~~~~ll~G~---Iae~~TGeGKTla~~lp~~~~al~---G~--~v~VvTptreLA~qdae~~~-~l~~~lGl 173 (656)
T PRK12898 103 RHFDVQLMGGLALLSGR---LAEMQTGEGKTLTATLPAGTAALA---GL--PVHVITVNDYLAERDAELMR-PLYEALGL 173 (656)
T ss_pred CCChHHHHHHHHHhCCC---eeeeeCCCCcHHHHHHHHHHHhhc---CC--eEEEEcCcHHHHHHHHHHHH-HHHhhcCC
Confidence 68899999999999865 999999999999999999977554 33 89999999999999999998 45556799
Q ss_pred EEEEEcCCcchhh-hcccCCcEEEeCHHHH-HHHHhhhh-----------------------ccccccceeEEEeccccc
Q 000114 1421 RVVELTGETAMDL-KLLEKGQIIISTPEKW-DALSRRWK-----------------------QRKYVQQVSLFIIDELHL 1475 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~-~~l~~~~IIV~TPe~l-~~l~r~~~-----------------------~~~~l~~v~llIiDEaH~ 1475 (2158)
+|+.++|+.+... +....++|+++|...+ .+.+|-.. .....+.+.+.||||+|.
T Consensus 174 sv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDS 253 (656)
T PRK12898 174 TVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADS 253 (656)
T ss_pred EEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecccc
Confidence 9999999876553 3445779999999887 22333211 112345678899999995
Q ss_pred cc-CC-C------CC---h-HHHHHHHHHHHHhhcCC-------------------------------------------
Q 000114 1476 IG-GQ-G------GP---V-LEVIVSRMRYIASQVEN------------------------------------------- 1500 (2158)
Q Consensus 1476 l~-~~-~------g~---~-~e~~isrl~~i~~~~~~------------------------------------------- 1500 (2158)
++ |+ + |+ . ...++.....+..++..
T Consensus 254 iLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~ 333 (656)
T PRK12898 254 VLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREEL 333 (656)
T ss_pred eeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHH
Confidence 53 11 0 11 0 01111111111110000
Q ss_pred --------------------------------------------------------------------------CceEEE
Q 000114 1501 --------------------------------------------------------------------------KIRIVA 1506 (2158)
Q Consensus 1501 --------------------------------------------------------------------------~~riV~ 1506 (2158)
-.++.|
T Consensus 334 i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~G 413 (656)
T PRK12898 334 VRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAG 413 (656)
T ss_pred HHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhc
Confidence 124667
Q ss_pred eccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChH
Q 000114 1507 LSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRK 1585 (2158)
Q Consensus 1507 lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~ 1585 (2158)
||||.+. .+++.++++... +. .|..+|.... .....-......+.. .....+......+.|+||||+|++
T Consensus 414 mTGTa~~~~~El~~~y~l~v---v~-IPt~kp~~r~-~~~~~v~~t~~~K~~----aL~~~i~~~~~~~~pvLIft~t~~ 484 (656)
T PRK12898 414 MTGTAREVAGELWSVYGLPV---VR-IPTNRPSQRR-HLPDEVFLTAAAKWA----AVAARVRELHAQGRPVLVGTRSVA 484 (656)
T ss_pred ccCcChHHHHHHHHHHCCCe---EE-eCCCCCccce-ecCCEEEeCHHHHHH----HHHHHHHHHHhcCCCEEEEeCcHH
Confidence 7777765 345666665542 11 2222332111 111000011111111 122222222234689999999999
Q ss_pred HHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEe
Q 000114 1586 YVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVM 1665 (2158)
Q Consensus 1586 ~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVa 1665 (2158)
.++.++..|.. .+..+..+||.++..++..+ .|..+...|+||
T Consensus 485 ~se~L~~~L~~-----------------------------------~gi~~~~Lhg~~~~rE~~ii--~~ag~~g~VlVA 527 (656)
T PRK12898 485 ASERLSALLRE-----------------------------------AGLPHQVLNAKQDAEEAAIV--ARAGQRGRITVA 527 (656)
T ss_pred HHHHHHHHHHH-----------------------------------CCCCEEEeeCCcHHHHHHHH--HHcCCCCcEEEE
Confidence 99999876632 34568899999765555544 455556679999
Q ss_pred cCccccccCCC---ccE-----EEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHH
Q 000114 1666 SSSMCWGVPLT---AHL-----VVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKF 1736 (2158)
Q Consensus 1666 T~~la~Gvdlp---~~~-----vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~ 1736 (2158)
|++++||+|++ .+. +|| +++.|-+...|.||+|||||.| ..|.++.++...+ +.+..|
T Consensus 528 TdmAgRGtDI~l~~~V~~~GGLhVI----------~~d~P~s~r~y~hr~GRTGRqG--~~G~s~~~is~eD-~l~~~~ 593 (656)
T PRK12898 528 TNMAGRGTDIKLEPGVAARGGLHVI----------LTERHDSARIDRQLAGRCGRQG--DPGSYEAILSLED-DLLQSF 593 (656)
T ss_pred ccchhcccCcCCccchhhcCCCEEE----------EcCCCCCHHHHHHhcccccCCC--CCeEEEEEechhH-HHHHhh
Confidence 99999999999 554 777 6778889999999999999987 7899998887644 444444
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=291.12 Aligned_cols=284 Identities=18% Similarity=0.199 Sum_probs=186.9
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
..+|+++|+.+++.++.+. +++++||||||||. |.++++..+.. .+.+++||+||++||.|+++.+..
T Consensus 76 g~~p~~iQ~~~i~~il~G~-d~vi~ApTGsGKT~-f~l~~~~~l~~----------~g~~vLIL~PTreLa~Qi~~~l~~ 143 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLRGD-SFAIIAPTGVGKTT-FGLAMSLFLAK----------KGKRCYIILPTTLLVIQVAEKISS 143 (1171)
T ss_pred CCCCcHHHHHHHHHHhCCC-eEEEECCCCCCHHH-HHHHHHHHHHh----------cCCeEEEEeCHHHHHHHHHHHHHH
Confidence 3479999999999999886 59999999999997 55666655543 135899999999999999999999
Q ss_pred hcccCCcEE---EEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-C---
Q 000114 573 RLQMYDVKV---RELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N--- 638 (2158)
Q Consensus 573 ~~~~~gi~v---~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~--- 638 (2158)
++...|+.+ +.++|+.+...+. ...++|+|+||+++........ .+++++|+||||.+.+ .
T Consensus 144 l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~-----~~~~~iVvDEaD~~L~~~k~v 218 (1171)
T TIGR01054 144 LAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG-----PKFDFIFVDDVDALLKASKNV 218 (1171)
T ss_pred HHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc-----CCCCEEEEeChHhhhhccccH
Confidence 887766654 3578887655431 1358999999998733222211 1789999999999876 2
Q ss_pred --------Chh-hHHHHHHHH---------------HHHHhhcccccc--EEEEccccCChHHHH-HHHhccccCceEEe
Q 000114 639 --------RGP-VLESIVART---------------VRQIETTKEHIR--LVGLSATLPNYEDVA-LFLRVNLEKGLFYF 691 (2158)
Q Consensus 639 --------rg~-~le~iv~r~---------------~~~~~~~~~~~r--iv~lSATlpn~~dv~-~~l~~~~~~~~~~f 691 (2158)
+.+ .++.++..+ .......+...| ++++|||..+. .+. .+++... .+..
T Consensus 219 d~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~-~~~~~l~r~ll---~~~v 294 (1171)
T TIGR01054 219 DKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPR-GKRAKLFRELL---GFEV 294 (1171)
T ss_pred HHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCcc-ccHHHHccccc---ceEe
Confidence 211 234332211 111112233334 67789994322 222 2222111 1112
Q ss_pred cCCcc-cccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecCh---HHHHHHHHHHHHHhhccccccccc
Q 000114 692 DNSYR-PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSR---KETAKTARAIRDTALENDTLGRFL 767 (2158)
Q Consensus 692 ~~~~r-pv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr---~~~~~~a~~L~~~~~~~~~~~~~~ 767 (2158)
..... .-.+.+.++. .... ...+ .+ +.... +.++||||+++ +.|..++..|.+.++.
T Consensus 295 ~~~~~~~r~I~~~~~~--~~~~---~~~L----~~-ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~-------- 355 (1171)
T TIGR01054 295 GGGSDTLRNVVDVYVE--DEDL---KETL----LE-IVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVK-------- 355 (1171)
T ss_pred cCccccccceEEEEEe--cccH---HHHH----HH-HHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCce--------
Confidence 11111 1122222221 1111 1111 11 22222 46899999999 9999999999875533
Q ss_pred ccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEe----chhhhhccCCCc-eEEE
Q 000114 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS----TATLAWGVNLPA-HTVI 842 (2158)
Q Consensus 768 ~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVa----T~tla~GVdlP~-v~vV 842 (2158)
+...||+|+ ..+++.|++|+++|||| |++++||+|+|+ +++|
T Consensus 356 -----------------------------a~~lhg~~~----~~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~v 402 (1171)
T TIGR01054 356 -----------------------------AVAYHATKP----KEDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYA 402 (1171)
T ss_pred -----------------------------EEEEeCCCC----HHHHHHHHcCCCCEEEEeccccCcccccCCCCccccEE
Confidence 456699997 36889999999999999 489999999999 7999
Q ss_pred EecccccCCCC
Q 000114 843 IKGTQIYNPEK 853 (2158)
Q Consensus 843 I~~~~~yd~~~ 853 (2158)
|+ |+.|+
T Consensus 403 I~----~~~P~ 409 (1171)
T TIGR01054 403 VF----LGVPK 409 (1171)
T ss_pred EE----ECCCC
Confidence 99 77775
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-23 Score=273.97 Aligned_cols=314 Identities=20% Similarity=0.203 Sum_probs=194.1
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
...|+|+|..+... -.+...+++.||||+|||.++++++.+.+..+. ..+++|..||+++++++++++.+
T Consensus 284 ~~~p~p~Q~~~~~~-~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~---------~~gi~~aLPT~Atan~m~~Rl~~ 353 (878)
T PRK09694 284 GYQPRQLQTLVDAL-PLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGL---------ADSIIFALPTQATANAMLSRLEA 353 (878)
T ss_pred CCCChHHHHHHHhh-ccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC---------CCeEEEECcHHHHHHHHHHHHHH
Confidence 45899999988543 234567999999999999999888776554331 23799999999999999999886
Q ss_pred hcccC--CcEEEEEeCCCccCHh-----------------------hh-------ccccEEEcchhHH-HHHHhccCCCc
Q 000114 573 RLQMY--DVKVRELSGDQTLTRQ-----------------------QI-------EETQIIVTTPEKW-DIITRKSGDRT 619 (2158)
Q Consensus 573 ~~~~~--gi~v~~l~Gd~~~~~~-----------------------~~-------~~~~IiV~TPekl-d~l~r~~~~~~ 619 (2158)
.+... ...+..++|....... .. --.+|+|||+..+ ..+..... .
T Consensus 354 ~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh--~ 431 (878)
T PRK09694 354 LASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKH--R 431 (878)
T ss_pred HHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccch--H
Confidence 43321 3467777776542210 00 1268999999986 23332211 1
Q ss_pred ccccc----ceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEccccCChH--HHHHHHhcc-c-c----Cc
Q 000114 620 YTQLV----KLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYE--DVALFLRVN-L-E----KG 687 (2158)
Q Consensus 620 ~l~~v----~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~--dv~~~l~~~-~-~----~~ 687 (2158)
+++.+ ++|||||+|.+- +.+..++.++++.... ...++|+||||+|..- .+..-.+.. . . .+
T Consensus 432 ~lR~~~La~svvIiDEVHAyD----~ym~~lL~~~L~~l~~--~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YP 505 (878)
T PRK09694 432 FIRGFGLGRSVLIVDEVHAYD----AYMYGLLEAVLKAQAQ--AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYP 505 (878)
T ss_pred HHHHHhhccCeEEEechhhCC----HHHHHHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhccccccccccccc
Confidence 22222 589999999873 2333444444444332 4577999999998521 111111110 0 0 00
Q ss_pred eE---------EecCCcc----cccceeEEEeeccCChhHHHHHhhHHHHHHHHHH-hCCCeEEEEecChHHHHHHHHHH
Q 000114 688 LF---------YFDNSYR----PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAI 753 (2158)
Q Consensus 688 ~~---------~f~~~~r----pv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L 753 (2158)
.. .+..... +.+....+......... -...+.+.+.+. ..+++++|||||++.|..+++.|
T Consensus 506 lvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~-----~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L 580 (878)
T PRK09694 506 LITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADML-----PDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRL 580 (878)
T ss_pred cccccccccceeeeccccccccCcceEEEEEeecccccc-----CHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHH
Confidence 00 0000000 11111111000000000 011233334333 34789999999999999999999
Q ss_pred HHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHH----HHHHHH-hCCC---ceEEE
Q 000114 754 RDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ----LVEDLF-GDGH---VQVLV 825 (2158)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~----~v~~~F-~~g~---i~VLV 825 (2158)
++.+.. ...+..+||+++..+|. .+++.| ++|. .+|||
T Consensus 581 ~~~~~~----------------------------------~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILV 626 (878)
T PRK09694 581 KELNNT----------------------------------QVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILV 626 (878)
T ss_pred HhhCCC----------------------------------CceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEE
Confidence 864211 02367889999999994 566677 6666 47999
Q ss_pred echhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCC
Q 000114 826 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (2158)
Q Consensus 826 aT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (2158)
||+++++|||++ .+++|... .++..++||+||+||.+.
T Consensus 627 aTQViE~GLDId-~DvlItdl------------aPidsLiQRaGR~~R~~~ 664 (878)
T PRK09694 627 ATQVVEQSLDLD-FDWLITQL------------CPVDLLFQRLGRLHRHHR 664 (878)
T ss_pred ECcchhheeecC-CCeEEECC------------CCHHHHHHHHhccCCCCC
Confidence 999999999995 68888621 145689999999999875
|
|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-24 Score=259.08 Aligned_cols=456 Identities=17% Similarity=0.187 Sum_probs=280.4
Q ss_pred HHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEE
Q 000114 502 RVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKV 581 (2158)
Q Consensus 502 ~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v 581 (2158)
++.++ ++.+.-+||||.||||||......+...-.... .. .++..|-+..|+|--|..++++...-++.+|-.|
T Consensus 263 ~IMEa-In~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~----~~-~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eV 336 (1172)
T KOG0926|consen 263 RIMEA-INENPVVIICGETGSGKTTQVPQFLYEAGFASE----QS-SSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEV 336 (1172)
T ss_pred HHHHH-hhcCCeEEEecCCCCCccccchHHHHHcccCCc----cC-CCCCeeeecCchHHHHHHHHHHHHHHhccCccce
Confidence 34444 456677999999999999875544443321111 01 1234788899999999999998887666666666
Q ss_pred EEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccc--
Q 000114 582 RELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKE-- 659 (2158)
Q Consensus 582 ~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~-- 659 (2158)
+.... ++......+.|.++|.+ +|+|.......+..++.|||||||.-. -....+--+++|+.+.+.....
T Consensus 337 sYqIR---fd~ti~e~T~IkFMTDG---VLLrEi~~DflL~kYSvIIlDEAHERS-vnTDILiGmLSRiV~LR~k~~ke~ 409 (1172)
T KOG0926|consen 337 SYQIR---FDGTIGEDTSIKFMTDG---VLLREIENDFLLTKYSVIILDEAHERS-VNTDILIGMLSRIVPLRQKYYKEQ 409 (1172)
T ss_pred eEEEE---eccccCCCceeEEecch---HHHHHHHHhHhhhhceeEEechhhhcc-chHHHHHHHHHHHHHHHHHHhhhh
Confidence 54332 11122346889999999 677776666788899999999999421 2345566667777666655544
Q ss_pred ----cccEEEEccccCChHHHHHHHhc----cccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHh
Q 000114 660 ----HIRLVGLSATLPNYEDVALFLRV----NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVA 731 (2158)
Q Consensus 660 ----~~riv~lSATlpn~~dv~~~l~~----~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~ 731 (2158)
+.++|.|||||. |..|-.. ....++...+.. ..|+..+|-.-+..+. ...+..+.| +|.+.+
T Consensus 410 ~~~kpLKLIIMSATLR----VsDFtenk~LFpi~pPlikVdAR--QfPVsIHF~krT~~DY--i~eAfrKtc--~IH~kL 479 (1172)
T KOG0926|consen 410 CQIKPLKLIIMSATLR----VSDFTENKRLFPIPPPLIKVDAR--QFPVSIHFNKRTPDDY--IAEAFRKTC--KIHKKL 479 (1172)
T ss_pred cccCceeEEEEeeeEE----ecccccCceecCCCCceeeeecc--cCceEEEeccCCCchH--HHHHHHHHH--HHhhcC
Confidence 789999999985 3333321 112234444443 3344444432222211 111222222 355667
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccc------cccc---ccc-----------CchhHHHHHhh-----------
Q 000114 732 GKHQVLIFVHSRKETAKTARAIRDTALENDT------LGRF---LKE-----------DSVSREILQSH----------- 780 (2158)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~------~~~~---~~~-----------~~~~~~~l~~~----------- 780 (2158)
+.+.+|||+....++..+++.|+......-. .... ++. .+...+.+...
T Consensus 480 P~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~ 559 (1172)
T KOG0926|consen 480 PPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDS 559 (1172)
T ss_pred CCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcc
Confidence 7889999999999999999999987331000 0000 000 00000000000
Q ss_pred ---------------hhcc--------Ccchhhh--------hccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechh
Q 000114 781 ---------------TDMV--------KSNDLKD--------LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTAT 829 (2158)
Q Consensus 781 ---------------~~~~--------~~~~l~~--------ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~t 829 (2158)
.... .+..+.. .-+.-|..+++-|+.+++..|++.-..|..-++|||++
T Consensus 560 ~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNV 639 (1172)
T KOG0926|consen 560 GFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNV 639 (1172)
T ss_pred cchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccc
Confidence 0000 0000111 11233667789999999999999999999999999999
Q ss_pred hhhccCCCceEEEEec----ccccCCCCC----ccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHhhcCC
Q 000114 830 LAWGVNLPAHTVIIKG----TQIYNPEKG----AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQ 901 (2158)
Q Consensus 830 la~GVdlP~v~vVI~~----~~~yd~~~g----~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~ 901 (2158)
++..+.+|++.+||++ ...||..+| ...++|.++--||+|||||.| .|.||.+++..=.+.
T Consensus 640 AETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGHcYRLYSSAVf~~-------- 708 (1172)
T KOG0926|consen 640 AETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGHCYRLYSSAVFSN-------- 708 (1172)
T ss_pred hhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCceeehhhhHHhhc--------
Confidence 9999999999999997 456888777 235789999999999999986 799999987643221
Q ss_pred CcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhH
Q 000114 902 LPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDR 981 (2158)
Q Consensus 902 ~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~ 981 (2158)
.+.++-..||...-+. +.+ |..+-+.=+..-+++.. +.|. ...++.|...|..
T Consensus 709 ---------~Fe~fS~PEIlk~Pve---~lv-------LqMKsMnI~kVvnFPFP---tpPd-----~~~L~~Aer~L~~ 761 (1172)
T KOG0926|consen 709 ---------DFEEFSLPEILKKPVE---SLV-------LQMKSMNIDKVVNFPFP---TPPD-----RSALEKAERRLKA 761 (1172)
T ss_pred ---------chhhhccHHHhhCcHH---HHH-------HHHHhcCccceecCCCC---CCcc-----HHHHHHHHHHHHH
Confidence 1111111222222111 111 01111111222222221 1111 1356789999999
Q ss_pred CCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCC
Q 000114 982 NNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPT 1023 (2158)
Q Consensus 982 ~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~ 1023 (2158)
.|.++.+ | .+|+||+.||+|+++|+-.+++.-.-...
T Consensus 762 LgALd~~---g--~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~ 798 (1172)
T KOG0926|consen 762 LGALDSN---G--GLTKLGKAMSLFPLSPRFSKMLATSDQHN 798 (1172)
T ss_pred hcccccc---C--CcccccchhcccccChhHHHHHHHHHhhc
Confidence 9999853 3 78999999999999999888887544333
|
|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-24 Score=234.75 Aligned_cols=304 Identities=18% Similarity=0.245 Sum_probs=215.6
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
|+++.++++-. ||.+|..+|.+||+....|-+ ++..|..|-|||.+|.++.++.+.. -.|.+.+++++.||+||-|
T Consensus 49 lkpellraivdcgfehpsevqhecipqailgmd-vlcqaksgmgktavfvl~tlqqiep--v~g~vsvlvmchtrelafq 125 (387)
T KOG0329|consen 49 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMD-VLCQAKSGMGKTAVFVLATLQQIEP--VDGQVSVLVMCHTRELAFQ 125 (387)
T ss_pred cCHHHHHHHHhccCCCchHhhhhhhhHHhhcch-hheecccCCCceeeeehhhhhhcCC--CCCeEEEEEEeccHHHHHH
Confidence 55667777766 899999999999999888666 9999999999999999999988865 2445688999999999999
Q ss_pred HHHHHHHHhcCC-CCcEEEEEcCCcch--hhhcccCC-cEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCC
Q 000114 1406 RYRDWEIKFGQG-LGMRVVELTGETAM--DLKLLEKG-QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2158)
Q Consensus 1406 ~~~~~~~~f~~~-~g~~v~~ltG~~~~--~~~~l~~~-~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g 1481 (2158)
+.+++. +|+++ .++++..+.|+... +.+.+.++ +|+|+||+++..+.|. ....+++++.+|+|||+.+.++-
T Consensus 126 i~~ey~-rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~--k~l~lk~vkhFvlDEcdkmle~l- 201 (387)
T KOG0329|consen 126 ISKEYE-RFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN--RSLNLKNVKHFVLDECDKMLEQL- 201 (387)
T ss_pred HHHHHH-HHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh--ccCchhhcceeehhhHHHHHHHH-
Confidence 999988 78776 67899999999765 45555555 9999999999999987 45679999999999999776431
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcC
Q 000114 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (2158)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~ 1560 (2158)
.....+..|.+.++...|+..+|||+++ .+-+...+-..+..+|.-.. . ...+.+.......-.-..-+
T Consensus 202 ----DMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE----~--KLtLHGLqQ~YvkLke~eKN 271 (387)
T KOG0329|consen 202 ----DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDE----A--KLTLHGLQQYYVKLKENEKN 271 (387)
T ss_pred ----HHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccch----h--hhhhhhHHHHHHhhhhhhhh
Confidence 0223344555667889999999999976 23333322222222221100 0 11111111111000001111
Q ss_pred hHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEec
Q 000114 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2158)
Q Consensus 1561 k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H 1640 (2158)
+..+.. +.. ..-.+++||+.|....
T Consensus 272 rkl~dL-Ld~-LeFNQVvIFvKsv~Rl----------------------------------------------------- 296 (387)
T KOG0329|consen 272 RKLNDL-LDV-LEFNQVVIFVKSVQRL----------------------------------------------------- 296 (387)
T ss_pred hhhhhh-hhh-hhhcceeEeeehhhhh-----------------------------------------------------
Confidence 122221 121 3346788887665310
Q ss_pred CCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceE
Q 000114 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2158)
Q Consensus 1641 ~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~ 1720 (2158)
+ | ..+ +|||+.++||+|+-.+++|+ |++.|-+...|+||+|||||-| ..|.
T Consensus 297 ---~----------f---~kr-~vat~lfgrgmdiervNi~~----------NYdmp~~~DtYlHrv~rAgrfG--tkgl 347 (387)
T KOG0329|consen 297 ---S----------F---QKR-LVATDLFGRGMDIERVNIVF----------NYDMPEDSDTYLHRVARAGRFG--TKGL 347 (387)
T ss_pred ---h----------h---hhh-hHHhhhhccccCcccceeee----------ccCCCCCchHHHHHhhhhhccc--cccc
Confidence 0 2 123 89999999999999999999 7888889999999999999976 8899
Q ss_pred EEEEecCChHH
Q 000114 1721 CVILCHAPRKE 1731 (2158)
Q Consensus 1721 ~iil~~~~~~~ 1731 (2158)
++.++......
T Consensus 348 aitfvs~e~da 358 (387)
T KOG0329|consen 348 AITFVSDENDA 358 (387)
T ss_pred eeehhcchhhH
Confidence 99998876543
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-23 Score=267.97 Aligned_cols=324 Identities=15% Similarity=0.151 Sum_probs=201.5
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g 1419 (2158)
-.++|+|.|++..+..... .++.++||+|||++|.+|++..... +. .++|++|+++||.|.++.+. .+...+|
T Consensus 67 lglrpydVQlig~l~l~~G-~Iaem~TGeGKTLta~Lpa~l~aL~---g~--~V~VVTpn~yLA~Rdae~m~-~l~~~LG 139 (762)
T TIGR03714 67 LGMFPYDVQVLGAIVLHQG-NIAEMKTGEGKTLTATMPLYLNALT---GK--GAMLVTTNDYLAKRDAEEMG-PVYEWLG 139 (762)
T ss_pred cCCCccHHHHHHHHHhcCC-ceeEecCCcchHHHHHHHHHHHhhc---CC--ceEEeCCCHHHHHHHHHHHH-HHHhhcC
Confidence 3567888888877654444 7999999999999999998765544 33 69999999999999999887 5555679
Q ss_pred cEEEEEcCCc-----chh-hhcccCCcEEEeCHHHH-HHHHhhh----hccccccceeEEEecccccccC-C-C------
Q 000114 1420 MRVVELTGET-----AMD-LKLLEKGQIIISTPEKW-DALSRRW----KQRKYVQQVSLFIIDELHLIGG-Q-G------ 1480 (2158)
Q Consensus 1420 ~~v~~ltG~~-----~~~-~~~l~~~~IIV~TPe~l-~~l~r~~----~~~~~l~~v~llIiDEaH~l~~-~-~------ 1480 (2158)
++|+...++. ... .+....++|+++||+++ .+.++.. .....++.+.++|+||||.++- + +
T Consensus 140 Lsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliis 219 (762)
T TIGR03714 140 LTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVIS 219 (762)
T ss_pred CcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeee
Confidence 9998877652 111 23345789999999999 4444321 1123467899999999997732 1 1
Q ss_pred CChH--HHHHHHHHHHHhhcCC--------CceEEEec------------------------------------------
Q 000114 1481 GPVL--EVIVSRMRYIASQVEN--------KIRIVALS------------------------------------------ 1508 (2158)
Q Consensus 1481 g~~~--e~~isrl~~i~~~~~~--------~~riV~lS------------------------------------------ 1508 (2158)
|+.- ..+...+..+...+.. +.+-|.|+
T Consensus 220 g~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~ 299 (762)
T TIGR03714 220 GAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNK 299 (762)
T ss_pred CCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 1110 1122222222222211 12222222
Q ss_pred -------------------------------------------------------------------cCCCC-hHHHHHH
Q 000114 1509 -------------------------------------------------------------------TSLAN-AKDLGEW 1520 (2158)
Q Consensus 1509 -------------------------------------------------------------------ATl~n-~~dl~~w 1520 (2158)
.|... ..++.+.
T Consensus 300 dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~i 379 (762)
T TIGR03714 300 DYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIET 379 (762)
T ss_pred ceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHH
Confidence 22111 0111111
Q ss_pred hccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhccc
Q 000114 1521 IGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSM 1600 (2158)
Q Consensus 1521 l~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~ 1600 (2158)
.+. .++ .-|..+|+...-. ...-........ ......+.+....+.|+||||+|++.++.++..|..
T Consensus 380 Y~l---~v~-~IPt~kp~~r~d~-~d~i~~~~~~K~----~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~---- 446 (762)
T TIGR03714 380 YSL---SVV-KIPTNKPIIRIDY-PDKIYATLPEKL----MATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLR---- 446 (762)
T ss_pred hCC---CEE-EcCCCCCeeeeeC-CCeEEECHHHHH----HHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHH----
Confidence 110 011 1122222211100 000000000111 112222323335688999999999999888866632
Q ss_pred CCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCC----
Q 000114 1601 DGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLT---- 1676 (2158)
Q Consensus 1601 ~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp---- 1676 (2158)
.+..+..+||.+...+|..+.+.++.| +|+|||++++||+|+|
T Consensus 447 -------------------------------~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~ 493 (762)
T TIGR03714 447 -------------------------------EGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKG 493 (762)
T ss_pred -------------------------------CCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCcc
Confidence 244578899999999998888877776 7999999999999999
Q ss_pred -----ccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCCh
Q 000114 1677 -----AHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1677 -----~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~ 1729 (2158)
++.||+ ++..|-...+ .||+|||||.| ..|.++.+++..+
T Consensus 494 v~~~GGL~vIi----------t~~~ps~rid-~qr~GRtGRqG--~~G~s~~~is~eD 538 (762)
T TIGR03714 494 VAELGGLAVIG----------TERMENSRVD-LQLRGRSGRQG--DPGSSQFFVSLED 538 (762)
T ss_pred ccccCCeEEEE----------ecCCCCcHHH-HHhhhcccCCC--CceeEEEEEccch
Confidence 888888 3444444555 99999999987 7898988887654
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-23 Score=256.61 Aligned_cols=316 Identities=22% Similarity=0.338 Sum_probs=228.6
Q ss_pred CCCHHHHHHHHHHhcC-----CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1341 HFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~-----~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
.+|.-|.+|+..+... .-|-++.+.-|||||+++.++++..+.. +. ++..++||--||.|.+..+.+.|.
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~---G~--Q~ALMAPTEILA~QH~~~~~~~l~ 336 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA---GY--QAALMAPTEILAEQHYESLRKWLE 336 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc---CC--eeEEeccHHHHHHHHHHHHHHHhh
Confidence 6999999999998751 2378999999999999999999988866 44 899999999999999999998777
Q ss_pred CCCCcEEEEEcCCcchhhh-----cccC--CcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHH
Q 000114 1416 QGLGMRVVELTGETAMDLK-----LLEK--GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2158)
Q Consensus 1416 ~~~g~~v~~ltG~~~~~~~-----~l~~--~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~i 1488 (2158)
.. |++|..+||......+ .+.+ .+|+|+|-.- +. ....+++++|+|+||-|+.+ +-
T Consensus 337 ~~-~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHAL----iQ---d~V~F~~LgLVIiDEQHRFG---------V~ 399 (677)
T COG1200 337 PL-GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHAL----IQ---DKVEFHNLGLVIIDEQHRFG---------VH 399 (677)
T ss_pred hc-CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchh----hh---cceeecceeEEEEecccccc---------HH
Confidence 64 8999999998765422 3333 4999999542 22 34568899999999999997 44
Q ss_pred HHHHHHHhhcCC-CceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHH
Q 000114 1489 SRMRYIASQVEN-KIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTA 1566 (2158)
Q Consensus 1489 srl~~i~~~~~~-~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~ 1566 (2158)
.|.....+ +. .+.++.||||+-+ .-.+.-|-..+...+-..+|...|+.. .....+ . ....+..
T Consensus 400 QR~~L~~K--G~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T--~~i~~~--~--------~~~v~e~ 465 (677)
T COG1200 400 QRLALREK--GEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITT--VVIPHE--R--------RPEVYER 465 (677)
T ss_pred HHHHHHHh--CCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEE--EEeccc--c--------HHHHHHH
Confidence 55443322 33 5789999999643 323333333333334444555555432 222111 1 2245556
Q ss_pred HHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHh-cccEEEecCCCCH
Q 000114 1567 IVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL-RHGVGYLHEGLNK 1645 (2158)
Q Consensus 1567 i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l-~~gv~~~H~~l~~ 1645 (2158)
+...+..++++.+.||-.++.+.+-..- ..... ..|+..+ ...|+.+||.|+.
T Consensus 466 i~~ei~~GrQaY~VcPLIeESE~l~l~~---------------------a~~~~-----~~L~~~~~~~~vgL~HGrm~~ 519 (677)
T COG1200 466 IREEIAKGRQAYVVCPLIEESEKLELQA---------------------AEELY-----EELKSFLPELKVGLVHGRMKP 519 (677)
T ss_pred HHHHHHcCCEEEEEeccccccccchhhh---------------------HHHHH-----HHHHHHcccceeEEEecCCCh
Confidence 6777788999999999887665222000 00001 1223333 4559999999999
Q ss_pred HHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEe
Q 000114 1646 TDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2158)
Q Consensus 1646 ~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~ 1725 (2158)
.++..|++.|++|+++|||||.+.+.|||+|+.+++| .+++. -+-++++-|--||+||. +..+.|++++
T Consensus 520 ~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMV----Ie~AE-----RFGLaQLHQLRGRVGRG--~~qSyC~Ll~ 588 (677)
T COG1200 520 AEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMV----IENAE-----RFGLAQLHQLRGRVGRG--DLQSYCVLLY 588 (677)
T ss_pred HHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEE----Eechh-----hhhHHHHHHhccccCCC--CcceEEEEEe
Confidence 9999999999999999999999999999999877765 22221 13588999999999996 4889999999
Q ss_pred cCCh
Q 000114 1726 HAPR 1729 (2158)
Q Consensus 1726 ~~~~ 1729 (2158)
.++.
T Consensus 589 ~~~~ 592 (677)
T COG1200 589 KPPL 592 (677)
T ss_pred CCCC
Confidence 8876
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-23 Score=270.22 Aligned_cols=325 Identities=17% Similarity=0.130 Sum_probs=207.2
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.|+++|..+...+..| .|+.+.||+|||++|.+|++..... +. .+.+++||+.||.|.+..+. .+...+|+
T Consensus 78 ~p~~vQl~~~~~l~~G---~Iaem~TGeGKTL~a~lp~~l~al~---G~--~v~VvTpt~~LA~qd~e~~~-~l~~~lGl 148 (790)
T PRK09200 78 RPYDVQLIGALVLHEG---NIAEMQTGEGKTLTATMPLYLNALE---GK--GVHLITVNDYLAKRDAEEMG-QVYEFLGL 148 (790)
T ss_pred CCchHHHHhHHHHcCC---ceeeecCCCcchHHHHHHHHHHHHc---CC--CeEEEeCCHHHHHHHHHHHH-HHHhhcCC
Confidence 7888888887766543 3999999999999999999865554 33 79999999999999999988 45556799
Q ss_pred EEEEEcCCcc-hh-hhcccCCcEEEeCHHHH-HHHHhhh----hccccccceeEEEeccccccc-CC-C------CCh--
Q 000114 1421 RVVELTGETA-MD-LKLLEKGQIIISTPEKW-DALSRRW----KQRKYVQQVSLFIIDELHLIG-GQ-G------GPV-- 1483 (2158)
Q Consensus 1421 ~v~~ltG~~~-~~-~~~l~~~~IIV~TPe~l-~~l~r~~----~~~~~l~~v~llIiDEaH~l~-~~-~------g~~-- 1483 (2158)
+|+.++|+.+ .. .+....++|+++||+.+ .++++.. .....++.+.++||||||.++ ++ + |+.
T Consensus 149 ~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~ 228 (790)
T PRK09200 149 TVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRV 228 (790)
T ss_pred eEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCcc
Confidence 9999999887 43 44556789999999998 3333321 122356789999999999654 21 1 111
Q ss_pred HHHHHHHHHHHHhhcCC--------CceEEEeccC----------CCC---h--HHHHHHhcc-----------------
Q 000114 1484 LEVIVSRMRYIASQVEN--------KIRIVALSTS----------LAN---A--KDLGEWIGA----------------- 1523 (2158)
Q Consensus 1484 ~e~~isrl~~i~~~~~~--------~~riV~lSAT----------l~n---~--~dl~~wl~~----------------- 1523 (2158)
-..+......+..++.. ..+.+.++.. ++| . ..+..|+..
T Consensus 229 ~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~ 308 (790)
T PRK09200 229 QSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVY 308 (790)
T ss_pred ccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 01122222222222111 1222222210 000 0 011112110
Q ss_pred ---------------------------------------------------------------------------CCCce
Q 000114 1524 ---------------------------------------------------------------------------TSHGL 1528 (2158)
Q Consensus 1524 ---------------------------------------------------------------------------~~~~i 1528 (2158)
-.-.+
T Consensus 309 ~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v 388 (790)
T PRK09200 309 DGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEV 388 (790)
T ss_pred CCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCcE
Confidence 00011
Q ss_pred EecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccc
Q 000114 1529 FNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608 (2158)
Q Consensus 1529 ~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~ 1608 (2158)
... |..+|....-. ...-........ ......+......+.|+||||+|++.++.++..|..
T Consensus 389 ~~I-Pt~kp~~r~d~-~~~i~~~~~~K~----~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~------------ 450 (790)
T PRK09200 389 VQI-PTNRPIIRIDY-PDKVFVTLDEKY----KAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDE------------ 450 (790)
T ss_pred EEC-CCCCCcccccC-CCeEEcCHHHHH----HHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH------------
Confidence 111 22222211000 000000000111 112222222224688999999999999998876632
Q ss_pred cCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCC---CccE-----E
Q 000114 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPL---TAHL-----V 1680 (2158)
Q Consensus 1609 l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdl---p~~~-----v 1680 (2158)
.+..+..+||.++..++..+...+..| +|+|||++++||+|+ |.+. +
T Consensus 451 -----------------------~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~ 505 (790)
T PRK09200 451 -----------------------AGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLA 505 (790)
T ss_pred -----------------------CCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcE
Confidence 245678999999999998888887766 799999999999999 6887 8
Q ss_pred EEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCCh
Q 000114 1681 VVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1681 VI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~ 1729 (2158)
|| +++.|.+...|.||+|||||.| ..|.++.++...+
T Consensus 506 VI----------~~d~p~s~r~y~qr~GRtGR~G--~~G~s~~~is~eD 542 (790)
T PRK09200 506 VI----------GTERMESRRVDLQLRGRSGRQG--DPGSSQFFISLED 542 (790)
T ss_pred EE----------eccCCCCHHHHHHhhccccCCC--CCeeEEEEEcchH
Confidence 88 6778889999999999999987 7888888887654
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-23 Score=259.72 Aligned_cols=315 Identities=24% Similarity=0.346 Sum_probs=223.6
Q ss_pred CCCHHHHHHHHHHHcC---CC--cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSALSS---AD--NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~---~~--nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~ 569 (2158)
+||.-|++++..+... .. |=|+++.-|||||++|+++++..+.. ++++..+|||--||.|-+..
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~-----------G~Q~ALMAPTEILA~QH~~~ 330 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA-----------GYQAALMAPTEILAEQHYES 330 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc-----------CCeeEEeccHHHHHHHHHHH
Confidence 7899999999988753 22 56999999999999999999999875 45899999999999999999
Q ss_pred HHhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhh
Q 000114 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (2158)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~ 642 (2158)
+.+++.++|++|..+||...-..+. ....+|+|+|..- .. +...++++.|+||||=|+.+-..
T Consensus 331 ~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHAL----iQ---d~V~F~~LgLVIiDEQHRFGV~Q--- 400 (677)
T COG1200 331 LRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHAL----IQ---DKVEFHNLGLVIIDEQHRFGVHQ--- 400 (677)
T ss_pred HHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchh----hh---cceeecceeEEEEeccccccHHH---
Confidence 9999999999999999987655432 2468999999762 22 33567889999999999865211
Q ss_pred HHHHHHHHHHHHhhccc-cccEEEEccccCChHHHHHHHhccccCceE-EecCCcccccceeEEEeeccCChhHHHHHhh
Q 000114 643 LESIVARTVRQIETTKE-HIRLVGLSATLPNYEDVALFLRVNLEKGLF-YFDNSYRPVPLSQQYIGIQVKKPLQRFQLMN 720 (2158)
Q Consensus 643 le~iv~r~~~~~~~~~~-~~riv~lSATlpn~~dv~~~l~~~~~~~~~-~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~ 720 (2158)
| ..+...+. .+.++.||||. =+..++--.-.+...... .....- .|+....+ ......+
T Consensus 401 ------R--~~L~~KG~~~Ph~LvMTATP-IPRTLAlt~fgDldvS~IdElP~GR--kpI~T~~i--~~~~~~~------ 461 (677)
T COG1200 401 ------R--LALREKGEQNPHVLVMTATP-IPRTLALTAFGDLDVSIIDELPPGR--KPITTVVI--PHERRPE------ 461 (677)
T ss_pred ------H--HHHHHhCCCCCcEEEEeCCC-chHHHHHHHhccccchhhccCCCCC--CceEEEEe--ccccHHH------
Confidence 1 11223344 68899999993 334444333222211000 000111 23333322 2222112
Q ss_pred HHHHHHHH-HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhc-cCCeE
Q 000114 721 DLCYEKVV-AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL-PYGFA 798 (2158)
Q Consensus 721 ~~~~~~i~-~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll-~~gv~ 798 (2158)
+++.+. +..+++|+.+.|+-..+.+++--.-.... -..|+..+ .+.|+
T Consensus 462 --v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~----------------------------~~~L~~~~~~~~vg 511 (677)
T COG1200 462 --VYERIREEIAKGRQAYVVCPLIEESEKLELQAAEEL----------------------------YEELKSFLPELKVG 511 (677)
T ss_pred --HHHHHHHHHHcCCEEEEEeccccccccchhhhHHHH----------------------------HHHHHHHcccceeE
Confidence 222332 23358899999998877663321000000 00111122 34589
Q ss_pred EecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCC
Q 000114 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDS 878 (2158)
Q Consensus 799 ~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~ 878 (2158)
..||.|+..++..|++.|++|+++|||||.+.+.|||+|+.+++|- +|++. +..+++.|--||.||.+ .
T Consensus 512 L~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI----e~AER-----FGLaQLHQLRGRVGRG~--~ 580 (677)
T COG1200 512 LVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI----ENAER-----FGLAQLHQLRGRVGRGD--L 580 (677)
T ss_pred EEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE----echhh-----hhHHHHHHhccccCCCC--c
Confidence 9999999999999999999999999999999999999999999775 78775 58999999999999965 6
Q ss_pred ccEEEEEcCCCc
Q 000114 879 YGEGIIITGHSE 890 (2158)
Q Consensus 879 ~G~~iil~~~~~ 890 (2158)
.+.|++++....
T Consensus 581 qSyC~Ll~~~~~ 592 (677)
T COG1200 581 QSYCVLLYKPPL 592 (677)
T ss_pred ceEEEEEeCCCC
Confidence 689999988765
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.8e-23 Score=273.84 Aligned_cols=316 Identities=18% Similarity=0.200 Sum_probs=195.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC-
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG- 1417 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~- 1417 (2158)
...++|+|+.+.... .++..++|.||||+|||.+++.++.+.... ...+ +++|..||+++++++++++++.+...
T Consensus 284 ~~~p~p~Q~~~~~~~-~~pgl~ileApTGsGKTEAAL~~A~~l~~~-~~~~--gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 284 GYQPRQLQTLVDALP-LQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-GLAD--SIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCCChHHHHHHHhhc-cCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCC--eEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 448999999885432 346679999999999999998877765544 2233 89999999999999999987533222
Q ss_pred CCcEEEEEcCCcchhh-----------------------hccc-------CCcEEEeCHHHHHHHHhhhhccccccce--
Q 000114 1418 LGMRVVELTGETAMDL-----------------------KLLE-------KGQIIISTPEKWDALSRRWKQRKYVQQV-- 1465 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~~-----------------------~~l~-------~~~IIV~TPe~l~~l~r~~~~~~~l~~v-- 1465 (2158)
...++..++|....+. ..+. -++|+|||+.++..-.-..+ ...++.+
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~k-h~~lR~~~L 438 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVK-HRFIRGFGL 438 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccc-hHHHHHHhh
Confidence 1246777777543110 1111 25999999999863222211 1122333
Q ss_pred --eEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh--HHHHHHhccCCC----c---eE-----
Q 000114 1466 --SLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSH----G---LF----- 1529 (2158)
Q Consensus 1466 --~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~--~dl~~wl~~~~~----~---i~----- 1529 (2158)
++|||||+|.+.......++.++ +.+. ....++|+||||+|.. +.+.+-++.... . ..
T Consensus 439 a~svvIiDEVHAyD~ym~~lL~~~L---~~l~---~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~ 512 (878)
T PRK09694 439 GRSVLIVDEVHAYDAYMYGLLEAVL---KAQA---QAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGV 512 (878)
T ss_pred ccCeEEEechhhCCHHHHHHHHHHH---HHHH---hcCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccc
Confidence 48999999988432222223333 2222 2357799999999863 233332222100 0 00
Q ss_pred ----ec--C--CCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccC
Q 000114 1530 ----NF--P--PGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMD 1601 (2158)
Q Consensus 1530 ----~f--~--~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~ 1601 (2158)
.+ . +...+.+..+.+........ .-....+..+...+..+++++|||||++.|..++..|.....
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~-----~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~-- 585 (878)
T PRK09694 513 NGAQRFDLSAHPEQLPARFTIQLEPICLADM-----LPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNN-- 585 (878)
T ss_pred ccceeeeccccccccCcceEEEEEeeccccc-----cCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCC--
Confidence 00 0 00001111121111100000 001233445555556788999999999999999977742110
Q ss_pred CcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHH----HHHHHH-HcCC---ceEEEecCcccccc
Q 000114 1602 GDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQE----VVSALF-EAGK---IKVCVMSSSMCWGV 1673 (2158)
Q Consensus 1602 ~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~----~v~~~F-~~g~---i~VLVaT~~la~Gv 1673 (2158)
....+..+||.++..+|. .+++.| ++|+ ..|||||+++++|+
T Consensus 586 ------------------------------~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GL 635 (878)
T PRK09694 586 ------------------------------TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSL 635 (878)
T ss_pred ------------------------------CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhhee
Confidence 012488999999999994 566677 6666 47999999999999
Q ss_pred CCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCC
Q 000114 1674 PLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLL 1715 (2158)
Q Consensus 1674 dlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~ 1715 (2158)
|++. .++|. ...|+..++||+||+||.+.
T Consensus 636 DId~-DvlIt------------dlaPidsLiQRaGR~~R~~~ 664 (878)
T PRK09694 636 DLDF-DWLIT------------QLCPVDLLFQRLGRLHRHHR 664 (878)
T ss_pred ecCC-CeEEE------------CCCCHHHHHHHHhccCCCCC
Confidence 9976 45551 23478999999999999874
|
|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-23 Score=269.90 Aligned_cols=420 Identities=18% Similarity=0.197 Sum_probs=277.6
Q ss_pred HHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhh-cccCC
Q 000114 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR-LQMYD 578 (2158)
Q Consensus 500 Q~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~-~~~~g 578 (2158)
+.+.+-.+++.+..++|+|.||||||......||....... ...+|++..|+|--|..+++++..- ....|
T Consensus 177 ~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--------~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 177 MRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--------AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred HHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--------CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 34444456777888999999999999999999988765542 3557999999999999998887743 33345
Q ss_pred cEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhcc
Q 000114 579 VKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTK 658 (2158)
Q Consensus 579 i~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~ 658 (2158)
-.|+--.+- ..+....+.+.+||.+ ++.|.......+..+..||+||+|.=.- ....+-.++..++ ...
T Consensus 249 ~~VGYqvrl---~~~~s~~t~L~fcTtG---vLLr~L~~~~~l~~vthiivDEVHER~i-~~DflLi~lk~lL----~~~ 317 (924)
T KOG0920|consen 249 EEVGYQVRL---ESKRSRETRLLFCTTG---VLLRRLQSDPTLSGVTHIIVDEVHERSI-NTDFLLILLKDLL----PRN 317 (924)
T ss_pred CeeeEEEee---ecccCCceeEEEecHH---HHHHHhccCcccccCceeeeeeEEEccC-CcccHHHHHHHHh----hhC
Confidence 444433332 2222335889999999 5666665567889999999999995321 1122333333332 245
Q ss_pred ccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEE------------------eeccC----------
Q 000114 659 EHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI------------------GIQVK---------- 710 (2158)
Q Consensus 659 ~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~------------------~~~~~---------- 710 (2158)
+++++|+||||+ |.+.+..+++.. ++......-.|+ ..+|. +....
T Consensus 318 p~LkvILMSAT~-dae~fs~YF~~~---pvi~i~grtfpV--~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (924)
T KOG0920|consen 318 PDLKVILMSATL-DAELFSDYFGGC---PVITIPGRTFPV--KEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLW 391 (924)
T ss_pred CCceEEEeeeec-chHHHHHHhCCC---ceEeecCCCcch--HHHHHHHHHHHhcccccccccccccccCccccccchhc
Confidence 899999999998 578888888743 233322222222 11110 00000
Q ss_pred ChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhh
Q 000114 711 KPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2158)
Q Consensus 711 ~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 790 (2158)
... ....+...+...+.+....+.+|||.++..+...+...|.........
T Consensus 392 ~~~-id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~---------------------------- 442 (924)
T KOG0920|consen 392 EPE-IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADS---------------------------- 442 (924)
T ss_pred ccc-ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccc----------------------------
Confidence 000 000111112222223333689999999999999999988765432221
Q ss_pred hhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecc----cccCCCCC----ccccCCHH
Q 000114 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGT----QIYNPEKG----AWTELSPL 862 (2158)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~----~~yd~~~g----~~~~~s~~ 862 (2158)
...-|...|+.|+..+++.|++....|..+|++||++++.+|.+|+|.+||+.. ..||+..+ .-.++|.+
T Consensus 443 --~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkA 520 (924)
T KOG0920|consen 443 --LKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKA 520 (924)
T ss_pred --cceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeecccc
Confidence 012255669999999999999999999999999999999999999999999974 45888765 33678999
Q ss_pred HHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHhhc-CCCcccchhhHhhHHHHHHHHHhc-cccChHHHHHHHHhhHH
Q 000114 863 DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMN-QQLPIESQFVSKLADQLNAEIVLG-TVQNAKEACNWIGYTYL 940 (2158)
Q Consensus 863 ~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~-~~~pieS~l~~~l~d~lnaeI~~~-~i~~~~~~~~wl~~t~~ 940 (2158)
...||.|||||. ..|.||-+++... |.+++. .+.| +.++..|- |+++. .+-...++..||+
T Consensus 521 na~QR~GRAGRv---~~G~cy~L~~~~~---~~~~~~~~q~P------EilR~pL~-~l~L~iK~l~~~~~~~fLs---- 583 (924)
T KOG0920|consen 521 NAKQRRGRAGRV---RPGICYHLYTRSR---YEKLMLAYQLP------EILRTPLE-ELCLHIKVLEQGSIKAFLS---- 583 (924)
T ss_pred chHHhcccccCc---cCCeeEEeechhh---hhhcccccCCh------HHHhChHH-HhhheeeeccCCCHHHHHH----
Confidence 999999999997 4799999988754 333332 3333 22222222 22221 1222223333432
Q ss_pred HHHhhcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHh
Q 000114 941 YIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNE 1018 (2158)
Q Consensus 941 ~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~ 1018 (2158)
+++.-| ..+.|..|+..|.+.|.+..++ .+|+||+.+|.+++++.--++..-
T Consensus 584 --kaldpP-------------------~~~~v~~a~~~L~~igaL~~~e-----~LT~LG~~la~lPvd~~igK~ll~ 635 (924)
T KOG0920|consen 584 --KALDPP-------------------PADAVDLAIERLKQIGALDESE-----ELTPLGLHLASLPVDVRIGKLLLF 635 (924)
T ss_pred --HhcCCC-------------------ChHHHHHHHHHHHHhccccCcc-----cchHHHHHHHhCCCccccchhhee
Confidence 222222 1256889999999999998654 899999999999999987766543
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=259.02 Aligned_cols=322 Identities=16% Similarity=0.097 Sum_probs=207.2
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.|+++|..+...+..| .|..++||+|||++|.+|++-.... +. .+.+++||+.||.|.++.+. .+.+.+|+
T Consensus 56 ~p~~vQlig~~~l~~G---~Iaem~TGeGKTLva~lpa~l~aL~---G~--~V~VvTpt~~LA~qdae~~~-~l~~~LGL 126 (745)
T TIGR00963 56 RPFDVQLIGGIALHKG---KIAEMKTGEGKTLTATLPAYLNALT---GK--GVHVVTVNDYLAQRDAEWMG-QVYRFLGL 126 (745)
T ss_pred CccchHHhhhhhhcCC---ceeeecCCCccHHHHHHHHHHHHHh---CC--CEEEEcCCHHHHHHHHHHHH-HHhccCCC
Confidence 5677777777666443 3999999999999999999633333 33 68999999999999999888 55566799
Q ss_pred EEEEEcCCcchhh-hcccCCcEEEeCHHHH-HHHHhhhh----ccccccceeEEEecccccccC-C-------CCC--hH
Q 000114 1421 RVVELTGETAMDL-KLLEKGQIIISTPEKW-DALSRRWK----QRKYVQQVSLFIIDELHLIGG-Q-------GGP--VL 1484 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~-~~l~~~~IIV~TPe~l-~~l~r~~~----~~~~l~~v~llIiDEaH~l~~-~-------~g~--~~ 1484 (2158)
+|+.++|+.+... +....++|+++||.++ .+++|... ....++.+.++||||+|.++- + .|+ .-
T Consensus 127 sv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~ 206 (745)
T TIGR00963 127 SVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKS 206 (745)
T ss_pred eEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCc
Confidence 9999999877653 3334579999999998 66666531 123578899999999997652 1 122 11
Q ss_pred HHHHHHHHHHHhhcC--------CCceEEEec------------------------------------------------
Q 000114 1485 EVIVSRMRYIASQVE--------NKIRIVALS------------------------------------------------ 1508 (2158)
Q Consensus 1485 e~~isrl~~i~~~~~--------~~~riV~lS------------------------------------------------ 1508 (2158)
..++.....+...+. .+.+.|.|+
T Consensus 207 ~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d 286 (745)
T TIGR00963 207 TELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRD 286 (745)
T ss_pred hHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEEC
Confidence 111111222222111 011222222
Q ss_pred -------------------------------------------------------------cCCCC-hHHHHHHhccCCC
Q 000114 1509 -------------------------------------------------------------TSLAN-AKDLGEWIGATSH 1526 (2158)
Q Consensus 1509 -------------------------------------------------------------ATl~n-~~dl~~wl~~~~~ 1526 (2158)
.|... ..++.+..+..
T Consensus 287 ~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~-- 364 (745)
T TIGR00963 287 GEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLE-- 364 (745)
T ss_pred CEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCC--
Confidence 22211 00111111110
Q ss_pred ceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccc
Q 000114 1527 GLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS 1606 (2158)
Q Consensus 1527 ~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~ 1606 (2158)
++. -|..+|....- .+..-+..... ..+.....+......+.|+||||+|...++.++..|..
T Consensus 365 -vv~-IPtnkp~~R~d----~~d~i~~t~~~-k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~---------- 427 (745)
T TIGR00963 365 -VVV-VPTNRPVIRKD----LSDLVYKTEEE-KWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKE---------- 427 (745)
T ss_pred -EEE-eCCCCCeeeee----CCCeEEcCHHH-HHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH----------
Confidence 111 12222211100 00000000000 01122233333347899999999999999999876632
Q ss_pred cccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCc-------cE
Q 000114 1607 AFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTA-------HL 1679 (2158)
Q Consensus 1607 ~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~-------~~ 1679 (2158)
.+.....+||. +.+|...+..|+.+...|+|||++++||+|++. ..
T Consensus 428 -------------------------~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl 480 (745)
T TIGR00963 428 -------------------------RGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGL 480 (745)
T ss_pred -------------------------cCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCc
Confidence 23346788998 778999999999999999999999999999998 55
Q ss_pred EEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCCh
Q 000114 1680 VVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1680 vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~ 1729 (2158)
+|| +.+.|-+...+.|+.|||||.| ..|.+..+++..+
T Consensus 481 ~VI----------~t~~p~s~ri~~q~~GRtGRqG--~~G~s~~~ls~eD 518 (745)
T TIGR00963 481 YVI----------GTERHESRRIDNQLRGRSGRQG--DPGSSRFFLSLED 518 (745)
T ss_pred EEE----------ecCCCCcHHHHHHHhccccCCC--CCcceEEEEeccH
Confidence 888 6678889999999999999998 6788887777664
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=219.60 Aligned_cols=316 Identities=20% Similarity=0.270 Sum_probs=222.6
Q ss_pred CCCCHHHHHHHHHHh---cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000114 1340 KHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~---~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~ 1416 (2158)
.+++|.|..+-+.++ +.....||.|-||+|||.+..-+|-..+.+ ++ ++.+.+|+...|.+.+.+++..|.
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~---G~--~vciASPRvDVclEl~~Rlk~aF~- 169 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ---GG--RVCIASPRVDVCLELYPRLKQAFS- 169 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc---CC--eEEEecCcccchHHHHHHHHHhhc-
Confidence 479999998877764 356679999999999999876666665555 55 899999999999999999998886
Q ss_pred CCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHh
Q 000114 1417 GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIAS 1496 (2158)
Q Consensus 1417 ~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~ 1496 (2158)
+..+..++|+..... .++++|+|..++..+ -+.++++||||+|...-...+.+...+...+.
T Consensus 170 --~~~I~~Lyg~S~~~f----r~plvVaTtHQLlrF---------k~aFD~liIDEVDAFP~~~d~~L~~Av~~ark--- 231 (441)
T COG4098 170 --NCDIDLLYGDSDSYF----RAPLVVATTHQLLRF---------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKARK--- 231 (441)
T ss_pred --cCCeeeEecCCchhc----cccEEEEehHHHHHH---------HhhccEEEEeccccccccCCHHHHHHHHHhhc---
Confidence 468899999876553 379999998875432 25689999999997754445556555554442
Q ss_pred hcCCCceEEEeccCCCChHHHHHHhccCCCceEec----CCCCcccccEEEEecccccchHHHHH--hcChHHHHHHHHh
Q 000114 1497 QVENKIRIVALSTSLANAKDLGEWIGATSHGLFNF----PPGVRPVPLEIHIQGVDITNFEARMQ--AMTKPTFTAIVQH 1570 (2158)
Q Consensus 1497 ~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f----~~~~rpv~l~~~i~~~~~~~~~~~~~--~~~k~~~~~i~~~ 1570 (2158)
..--+|.||||.++. +..-+.......... +..--|+|-.+.+..+ ...+. .+....+..+..+
T Consensus 232 ---~~g~~IylTATp~k~--l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~-----~k~l~r~kl~~kl~~~lekq 301 (441)
T COG4098 232 ---KEGATIYLTATPTKK--LERKILKGNLRILKLPARFHGKPLPVPKFVWIGNW-----NKKLQRNKLPLKLKRWLEKQ 301 (441)
T ss_pred ---ccCceEEEecCChHH--HHHHhhhCCeeEeecchhhcCCCCCCCceEEeccH-----HHHhhhccCCHHHHHHHHHH
Confidence 355679999998753 222221111111111 1111233333332211 11111 1233445556666
Q ss_pred HhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHH
Q 000114 1571 AKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEV 1650 (2158)
Q Consensus 1571 ~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~ 1650 (2158)
...+.|++||+|+.+..+.+|..|.... -...++..|+. ..+|..
T Consensus 302 ~~~~~P~liF~p~I~~~eq~a~~lk~~~---------------------------------~~~~i~~Vhs~--d~~R~E 346 (441)
T COG4098 302 RKTGRPVLIFFPEIETMEQVAAALKKKL---------------------------------PKETIASVHSE--DQHRKE 346 (441)
T ss_pred HhcCCcEEEEecchHHHHHHHHHHHhhC---------------------------------Cccceeeeecc--CccHHH
Confidence 6788999999999999998886652211 12236778875 567888
Q ss_pred HHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChH
Q 000114 1651 VSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK 1730 (2158)
Q Consensus 1651 v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~ 1730 (2158)
..+.|++|++.+||+|.+++||+.+|.+.|.|.|.. | .-++-+.++|++||+||.-....|.++.|-....+
T Consensus 347 kV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgae------h--~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~sk 418 (441)
T COG4098 347 KVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAE------H--RVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSK 418 (441)
T ss_pred HHHHHHcCceEEEEEeehhhcccccccceEEEecCC------c--ccccHHHHHHHhhhccCCCcCCCCcEEEEeccchH
Confidence 999999999999999999999999999999997654 2 34578899999999999875667877777666554
Q ss_pred HH
Q 000114 1731 EY 1732 (2158)
Q Consensus 1731 ~~ 1732 (2158)
..
T Consensus 419 aM 420 (441)
T COG4098 419 AM 420 (441)
T ss_pred HH
Confidence 43
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.7e-22 Score=274.66 Aligned_cols=288 Identities=17% Similarity=0.133 Sum_probs=180.9
Q ss_pred hHHHHHhc--CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH
Q 000114 1330 PLYEALYQ--GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2158)
Q Consensus 1330 ~~~~~l~~--gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~ 1407 (2158)
..+.++|. ....|+|+|.++++.++.+. +++++||||||||. |.+++...+.. .+ ++++||+||++||.|++
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~-d~vi~ApTGsGKT~-f~l~~~~~l~~--~g--~~vLIL~PTreLa~Qi~ 138 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGD-SFAIIAPTGVGKTT-FGLAMSLFLAK--KG--KRCYIILPTTLLVIQVA 138 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCC-eEEEECCCCCCHHH-HHHHHHHHHHh--cC--CeEEEEeCHHHHHHHHH
Confidence 34566665 24579999999999999865 59999999999997 55666655543 23 39999999999999999
Q ss_pred HHHHHHhcCCCCcE---EEEEcCCcchhhh-----ccc--CCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccccc
Q 000114 1408 RDWEIKFGQGLGMR---VVELTGETAMDLK-----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1408 ~~~~~~f~~~~g~~---v~~ltG~~~~~~~-----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
+.+++ +....|+. ++.++|+.+...+ .+. .++|+|+||+++.....++. .+++++|+||||.+.
T Consensus 139 ~~l~~-l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~-----~~~~~iVvDEaD~~L 212 (1171)
T TIGR01054 139 EKISS-LAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG-----PKFDFIFVDDVDALL 212 (1171)
T ss_pred HHHHH-HHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc-----CCCCEEEEeChHhhh
Confidence 99985 44444544 3457888765422 222 36999999999876655421 189999999999987
Q ss_pred CCC----------CC---hHHHHHHH---------------HHHHHhhcCCCce--EEEeccCCCChHHHHHHhccCCCc
Q 000114 1478 GQG----------GP---VLEVIVSR---------------MRYIASQVENKIR--IVALSTSLANAKDLGEWIGATSHG 1527 (2158)
Q Consensus 1478 ~~~----------g~---~~e~~isr---------------l~~i~~~~~~~~r--iV~lSATl~n~~dl~~wl~~~~~~ 1527 (2158)
+.. |- .++.++.. +..+.+..+...| ++++|||..+...-..++. ....
T Consensus 213 ~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r-~ll~ 291 (1171)
T TIGR01054 213 KASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFR-ELLG 291 (1171)
T ss_pred hccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcc-cccc
Confidence 631 11 12222211 1111222233433 6778999433211111111 1101
Q ss_pred eEecCCCCccc-ccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecCh---HHHHHHHHHHHhhcccCCc
Q 000114 1528 LFNFPPGVRPV-PLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSR---KYVRLTAVDLMTYSSMDGD 1603 (2158)
Q Consensus 1528 i~~f~~~~rpv-~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr---~~~~~~a~~L~~~~~~~~~ 1603 (2158)
+......... .+..... .... . ......+... -+.++||||+|+ +.|..++..|..
T Consensus 292 -~~v~~~~~~~r~I~~~~~--~~~~---~-----~~~L~~ll~~--l~~~~IVFv~t~~~~~~a~~l~~~L~~------- 351 (1171)
T TIGR01054 292 -FEVGGGSDTLRNVVDVYV--EDED---L-----KETLLEIVKK--LGTGGIVYVSIDYGKEKAEEIAEFLEN------- 351 (1171)
T ss_pred -eEecCccccccceEEEEE--eccc---H-----HHHHHHHHHH--cCCCEEEEEeccccHHHHHHHHHHHHh-------
Confidence 1111111000 1111111 0000 0 1112223332 246799999999 888888865521
Q ss_pred ccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEe----cCccccccCCCc-c
Q 000114 1604 QKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVM----SSSMCWGVPLTA-H 1678 (2158)
Q Consensus 1604 ~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVa----T~~la~Gvdlp~-~ 1678 (2158)
.+..+..+||+|+. .+++.|++|+++|||| |++++||||+|. +
T Consensus 352 ----------------------------~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V 399 (1171)
T TIGR01054 352 ----------------------------HGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERV 399 (1171)
T ss_pred ----------------------------CCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccc
Confidence 24568899999973 6889999999999999 489999999998 6
Q ss_pred EEEE
Q 000114 1679 LVVV 1682 (2158)
Q Consensus 1679 ~vVI 1682 (2158)
++||
T Consensus 400 ~~vI 403 (1171)
T TIGR01054 400 RYAV 403 (1171)
T ss_pred cEEE
Confidence 8887
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=228.03 Aligned_cols=444 Identities=16% Similarity=0.196 Sum_probs=276.0
Q ss_pred HHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCc
Q 000114 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDV 579 (2158)
Q Consensus 500 Q~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi 579 (2158)
|+.-|-..+..+.-+++++.||||||.......+.....+. ..+.+..|.|--|.+++.+... .+.+
T Consensus 51 ~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~----------~~v~CTQprrvaamsva~RVad---EMDv 117 (699)
T KOG0925|consen 51 QKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL----------TGVACTQPRRVAAMSVAQRVAD---EMDV 117 (699)
T ss_pred hHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc----------cceeecCchHHHHHHHHHHHHH---Hhcc
Confidence 55667777888888999999999999876666555544432 2589999999999999988876 3455
Q ss_pred EEEEEeCCC-ccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhcc
Q 000114 580 KVRELSGDQ-TLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTK 658 (2158)
Q Consensus 580 ~v~~l~Gd~-~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~ 658 (2158)
..+.-.|-. .+.+-...++-+-+||.+ ++.|.......+..+++||+|||| +|.-....+ .-+++.+....
T Consensus 118 ~lG~EVGysIrfEdC~~~~T~Lky~tDg---mLlrEams~p~l~~y~viiLDeah----ERtlATDiL-mGllk~v~~~r 189 (699)
T KOG0925|consen 118 TLGEEVGYSIRFEDCTSPNTLLKYCTDG---MLLREAMSDPLLGRYGVIILDEAH----ERTLATDIL-MGLLKEVVRNR 189 (699)
T ss_pred ccchhccccccccccCChhHHHHHhcch---HHHHHHhhCcccccccEEEechhh----hhhHHHHHH-HHHHHHHHhhC
Confidence 555544422 222211122333345555 667776666788999999999999 343333333 33333333345
Q ss_pred ccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEE
Q 000114 659 EHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLI 738 (2158)
Q Consensus 659 ~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLV 738 (2158)
++.++|.+|||+ ....+..|.+.. ++....+ ..|+.+ .| ...-....+.+....+++.. .....+.++|
T Consensus 190 pdLk~vvmSatl-~a~Kfq~yf~n~---Pll~vpg-~~PvEi--~Y---t~e~erDylEaairtV~qih-~~ee~GDilv 258 (699)
T KOG0925|consen 190 PDLKLVVMSATL-DAEKFQRYFGNA---PLLAVPG-THPVEI--FY---TPEPERDYLEAAIRTVLQIH-MCEEPGDILV 258 (699)
T ss_pred CCceEEEeeccc-chHHHHHHhCCC---CeeecCC-CCceEE--Ee---cCCCChhHHHHHHHHHHHHH-hccCCCCEEE
Confidence 799999999997 456777777643 3444444 334433 22 22222233444333333322 2233789999
Q ss_pred EecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHh-
Q 000114 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG- 817 (2158)
Q Consensus 739 Fv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~- 817 (2158)
|..+..+.+..++.+...+-.-. .++.+..|..+| +.++..+++-..
T Consensus 259 FLtgeeeIe~aC~~i~re~~~L~----------------------------~~~g~l~v~PLy----P~~qq~iFep~p~ 306 (699)
T KOG0925|consen 259 FLTGEEEIEDACRKISREVDNLG----------------------------PQVGPLKVVPLY----PAQQQRIFEPAPE 306 (699)
T ss_pred EecCHHHHHHHHHHHHHHHHhhc----------------------------cccCCceEEecC----chhhccccCCCCc
Confidence 99999999999988875431110 011122233334 222222222211
Q ss_pred --CC--CceEEEechhhhhccCCCceEEEEec----ccccCCCCC----ccccCCHHHHHHhhcccCCCCCCCccEEEEE
Q 000114 818 --DG--HVQVLVSTATLAWGVNLPAHTVIIKG----TQIYNPEKG----AWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2158)
Q Consensus 818 --~g--~i~VLVaT~tla~GVdlP~v~vVI~~----~~~yd~~~g----~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2158)
+| ..+|+|+|++++..+.++++.+||+- ..+|+|.-. -..++|..+..||.|||||. ..|+|+.+
T Consensus 307 ~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt---~pGkcfrL 383 (699)
T KOG0925|consen 307 KRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRL 383 (699)
T ss_pred ccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC---CCCceEEe
Confidence 12 35899999999999999999999985 467888642 23679999999999999996 57999999
Q ss_pred cCCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHH
Q 000114 886 TGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLG 965 (2158)
Q Consensus 886 ~~~~~~~~y~~ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~ 965 (2158)
++..- |.+-+.. ....+.++.+|.+-+..-.-..+++. -.+. +.+.|.
T Consensus 384 Yte~~---~~~em~~-----~typeilrsNL~s~VL~LKklgI~dl-----------------vhfd-----fmDpPA-- 431 (699)
T KOG0925|consen 384 YTEEA---FEKEMQP-----QTYPEILRSNLSSTVLQLKKLGIDDL-----------------VHFD-----FMDPPA-- 431 (699)
T ss_pred ecHHh---hhhcCCC-----CCcHHHHHHhhHHHHHHHHhcCcccc-----------------cCCc-----CCCCCC--
Confidence 88632 2222211 11223344444443322211112221 1111 111121
Q ss_pred HHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCC
Q 000114 966 ERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVR 1045 (2158)
Q Consensus 966 ~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r 1045 (2158)
.+.+..|++.|.-.+++.-| ..+|++|.+||.|+++|..+++++.+....|+ .++|.|-++-+- .+..+|
T Consensus 432 ---PEtLMrALE~LnYLaaLdDd-----GnLT~lG~imSEFPLdPqLAkmLi~S~efnCs-nEiLsisAMLsv-PncFvR 501 (699)
T KOG0925|consen 432 ---PETLMRALEVLNYLAALDDD-----GNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCS-NEILSISAMLSV-PNCFVR 501 (699)
T ss_pred ---hHHHHHHHHHhhhhhhhCCC-----cccchhhhhhhcCCCChHHHHHHhhcCCCCch-HHHHHHHhcccC-CccccC
Confidence 24567889999888888643 37899999999999999999999998888876 677766555332 455566
Q ss_pred hh-HHHHH
Q 000114 1046 QD-EKMEL 1052 (2158)
Q Consensus 1046 ~~-e~~~l 1052 (2158)
+. +.++.
T Consensus 502 p~~~a~ka 509 (699)
T KOG0925|consen 502 PTSSASKA 509 (699)
T ss_pred CChhHHHH
Confidence 65 44433
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.4e-22 Score=252.09 Aligned_cols=297 Identities=21% Similarity=0.288 Sum_probs=192.9
Q ss_pred CCCCCHHHHHHHHHHHcC---CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000114 493 MTQLNRVQSRVYKSALSS---ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~---~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~ 569 (2158)
...|+++|.+++.++... ....++++|||+|||.+++..|-... .+++||+|+++|+.|+.+.
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~--------------~~~Lvlv~~~~L~~Qw~~~ 99 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK--------------RSTLVLVPTKELLDQWAEA 99 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc--------------CCEEEEECcHHHHHHHHHH
Confidence 347999999999998884 56699999999999999987765541 1399999999999999988
Q ss_pred HHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhc-cCCCccccccceEEeecccccccCChhhHHHHHH
Q 000114 570 LSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRK-SGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVA 648 (2158)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~-~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~ 648 (2158)
+...+.. +..++.+.|+...... ..|.|+|... +.+. .......+..++||+||||++.... ...+..
T Consensus 100 ~~~~~~~-~~~~g~~~~~~~~~~~----~~i~vat~qt---l~~~~~l~~~~~~~~~liI~DE~Hh~~a~~---~~~~~~ 168 (442)
T COG1061 100 LKKFLLL-NDEIGIYGGGEKELEP----AKVTVATVQT---LARRQLLDEFLGNEFGLIIFDEVHHLPAPS---YRRILE 168 (442)
T ss_pred HHHhcCC-ccccceecCceeccCC----CcEEEEEhHH---HhhhhhhhhhcccccCEEEEEccccCCcHH---HHHHHH
Confidence 7775542 2346666665432221 5799999885 4443 1111233468999999999986532 222222
Q ss_pred HHHHHHhhcccccc-EEEEccccCChH-----HHHHHHhccccCceEEec-----CCcccccceeEEEeeccCC------
Q 000114 649 RTVRQIETTKEHIR-LVGLSATLPNYE-----DVALFLRVNLEKGLFYFD-----NSYRPVPLSQQYIGIQVKK------ 711 (2158)
Q Consensus 649 r~~~~~~~~~~~~r-iv~lSATlpn~~-----dv~~~l~~~~~~~~~~f~-----~~~rpv~l~~~~~~~~~~~------ 711 (2158)
.+ .... ++|||||++..+ ++...++ ..++.+. ..-.-.|.....+......
T Consensus 169 ~~--------~~~~~~LGLTATp~R~D~~~~~~l~~~~g----~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~ 236 (442)
T COG1061 169 LL--------SAAYPRLGLTATPEREDGGRIGDLFDLIG----PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREY 236 (442)
T ss_pred hh--------hcccceeeeccCceeecCCchhHHHHhcC----CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHh
Confidence 11 1223 899999976221 1222221 0011111 0000112211111111000
Q ss_pred --hhHHH-------------------HHhhH----HHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccc
Q 000114 712 --PLQRF-------------------QLMND----LCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRF 766 (2158)
Q Consensus 712 --~~~~~-------------------~~l~~----~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~ 766 (2158)
...+. ...+. .+...+..+..+.+++|||.+..++..++..+...+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-------- 308 (442)
T COG1061 237 AKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-------- 308 (442)
T ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc--------
Confidence 00000 00000 1111111121356999999999999999988764321
Q ss_pred cccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecc
Q 000114 767 LKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGT 846 (2158)
Q Consensus 767 ~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~ 846 (2158)
+....+..+..+|..+++.|+.|.+++||++.++..|+|+|++.++|.
T Consensus 309 ------------------------------~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~-- 356 (442)
T COG1061 309 ------------------------------VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLII-- 356 (442)
T ss_pred ------------------------------eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEE--
Confidence 345589999999999999999999999999999999999999999997
Q ss_pred cccCCCCCccccCCHHHHHHhhcccCCC
Q 000114 847 QIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (2158)
Q Consensus 847 ~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (2158)
-.|.. |...|+||+||.-|+
T Consensus 357 --~~~t~------S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 357 --LRPTG------SRRLFIQRLGRGLRP 376 (442)
T ss_pred --eCCCC------cHHHHHHHhhhhccC
Confidence 45533 889999999999996
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-22 Score=232.76 Aligned_cols=289 Identities=17% Similarity=0.228 Sum_probs=186.1
Q ss_pred CCCcEEEEEcccHHHHHHHHHHHHhh---cccCCcEEEEEeCCCccCH---hhhccccEEEcchhHHHHHHhccCCCccc
Q 000114 548 HSNYKIVYVAPMKALVAEVVGNLSNR---LQMYDVKVRELSGDQTLTR---QQIEETQIIVTTPEKWDIITRKSGDRTYT 621 (2158)
Q Consensus 548 ~~~~kil~iaP~kaLa~q~~~~~~~~---~~~~gi~v~~l~Gd~~~~~---~~~~~~~IiV~TPekld~l~r~~~~~~~l 621 (2158)
.+.+++|++-|.++|+.|..+.+.++ .....++-..+.|+..... +...+++|+|+||++++....+.. ..+
T Consensus 284 pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~--~~l 361 (725)
T KOG0349|consen 284 PNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGL--VTL 361 (725)
T ss_pred CCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccc--eee
Confidence 35678999999999999999966553 3222344445556544333 235689999999999855444432 567
Q ss_pred cccceEEeecccccccCChhhHHHHHHHHHHHHhh---ccccccEEEEccccCCh--HHHH-------HHHhcccc----
Q 000114 622 QLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIET---TKEHIRLVGLSATLPNY--EDVA-------LFLRVNLE---- 685 (2158)
Q Consensus 622 ~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~---~~~~~riv~lSATlpn~--~dv~-------~~l~~~~~---- 685 (2158)
.+++++++||++.++.. .+...+.|+..++.. ....++.+..|||+.-. ..++ .|......
T Consensus 362 t~crFlvlDead~lL~q---gy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vp 438 (725)
T KOG0349|consen 362 THCRFLVLDEADLLLGQ---GYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVP 438 (725)
T ss_pred eeeEEEEecchhhhhhc---ccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccc
Confidence 88999999999988752 233445555444433 33568899999998632 1222 22211100
Q ss_pred CceEE--------ecCCcccc--cc-------eeEE--EeeccCChhHHHHHh-hHHHHHHHHHHhCCCeEEEEecChHH
Q 000114 686 KGLFY--------FDNSYRPV--PL-------SQQY--IGIQVKKPLQRFQLM-NDLCYEKVVAVAGKHQVLIFVHSRKE 745 (2158)
Q Consensus 686 ~~~~~--------f~~~~rpv--~l-------~~~~--~~~~~~~~~~~~~~l-~~~~~~~i~~~~~~~~vLVFv~sr~~ 745 (2158)
..+.. .+.+|... ++ .... ..............+ .+.+...+.++ ...++||||.|+.+
T Consensus 439 etvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h-~mdkaiifcrtk~d 517 (725)
T KOG0349|consen 439 ETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH-AMDKAIIFCRTKQD 517 (725)
T ss_pred hhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh-ccCceEEEEecccc
Confidence 00000 01111100 00 0000 001111111121111 12222233332 35689999999999
Q ss_pred HHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEE
Q 000114 746 TAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLV 825 (2158)
Q Consensus 746 ~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLV 825 (2158)
|..+-+++.+.+-. .+.+...||...+.+|+.-++.|+.+.++.||
T Consensus 518 cDnLer~~~qkgg~----------------------------------~~scvclhgDrkP~Erk~nle~Fkk~dvkfli 563 (725)
T KOG0349|consen 518 CDNLERMMNQKGGK----------------------------------HYSCVCLHGDRKPDERKANLESFKKFDVKFLI 563 (725)
T ss_pred chHHHHHHHHcCCc----------------------------------cceeEEEecCCChhHHHHHHHhhhhcCeEEEE
Confidence 99999998876531 13456679999999999999999999999999
Q ss_pred echhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCC
Q 000114 826 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2158)
Q Consensus 826 aT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2158)
||+++|||+|+..+.++|+-|.|-+.. .|+||+||.||+- +-|.+|.++..
T Consensus 564 ctdvaargldi~g~p~~invtlpd~k~----------nyvhrigrvgrae--rmglaislvat 614 (725)
T KOG0349|consen 564 CTDVAARGLDITGLPFMINVTLPDDKT----------NYVHRIGRVGRAE--RMGLAISLVAT 614 (725)
T ss_pred EehhhhccccccCCceEEEEecCcccc----------hhhhhhhccchhh--hcceeEEEeec
Confidence 999999999999999999988876654 5999999999975 67888877544
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.4e-21 Score=250.32 Aligned_cols=312 Identities=17% Similarity=0.239 Sum_probs=237.4
Q ss_pred CCC-CCCHHHHHHHHHHhc---C--CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHH
Q 000114 1338 GFK-HFNPIQTQVFTVLYN---T--DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2158)
Q Consensus 1338 gf~-~~~~iQ~q~~~~l~~---~--~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~ 1411 (2158)
+|+ .-||=|..||+.+.. + .-.-||||--|-|||.+|+-|++..... ++ ++.+++||.-||.|.|+.|+
T Consensus 590 ~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~---GK--QVAvLVPTTlLA~QHy~tFk 664 (1139)
T COG1197 590 SFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD---GK--QVAVLVPTTLLAQQHYETFK 664 (1139)
T ss_pred cCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC---CC--eEEEEcccHHhHHHHHHHHH
Confidence 444 579999999999875 2 2257999999999999999999988766 44 89999999999999999999
Q ss_pred HHhcCCCCcEEEEEcCCcchh-----hhcccCC--cEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChH
Q 000114 1412 IKFGQGLGMRVVELTGETAMD-----LKLLEKG--QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVL 1484 (2158)
Q Consensus 1412 ~~f~~~~g~~v~~ltG~~~~~-----~~~l~~~--~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~ 1484 (2158)
++|... +++|..+..-.+.. .+.+..+ ||||+|-. -......+++++|+||||-|+.|-..
T Consensus 665 eRF~~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr-------LL~kdv~FkdLGLlIIDEEqRFGVk~---- 732 (1139)
T COG1197 665 ERFAGF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR-------LLSKDVKFKDLGLLIIDEEQRFGVKH---- 732 (1139)
T ss_pred HHhcCC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH-------hhCCCcEEecCCeEEEechhhcCccH----
Confidence 999876 88998887654433 3344444 99999933 22234567899999999999987321
Q ss_pred HHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHH
Q 000114 1485 EVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTF 1564 (2158)
Q Consensus 1485 e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~ 1564 (2158)
-.+++.+ ..++-++.||||+-+..--..-.|...-.++.-+|..| .|+..++..++.. -..
T Consensus 733 ---KEkLK~L----r~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R-~pV~T~V~~~d~~-----------~ir 793 (1139)
T COG1197 733 ---KEKLKEL----RANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDR-LPVKTFVSEYDDL-----------LIR 793 (1139)
T ss_pred ---HHHHHHH----hccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCC-cceEEEEecCChH-----------HHH
Confidence 2334444 45899999999975432223345555555665555544 5667776655422 234
Q ss_pred HHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCC
Q 000114 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLN 1644 (2158)
Q Consensus 1565 ~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~ 1644 (2158)
.+|...+..++++...+|..+....++..|.... ....|++-||.|+
T Consensus 794 eAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LV---------------------------------PEarI~vaHGQM~ 840 (1139)
T COG1197 794 EAILRELLRGGQVFYVHNRVESIEKKAERLRELV---------------------------------PEARIAVAHGQMR 840 (1139)
T ss_pred HHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhC---------------------------------CceEEEEeecCCC
Confidence 5667777899999999999999999887774422 1235999999999
Q ss_pred HHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEE
Q 000114 1645 KTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVIL 1724 (2158)
Q Consensus 1645 ~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil 1724 (2158)
..+-+.++..|-+|+.+|||||.+.+.|||+|+.+.+|. ++---+-++++.|.-||+||. +..|.|+++
T Consensus 841 e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII---------e~AD~fGLsQLyQLRGRVGRS--~~~AYAYfl 909 (1139)
T COG1197 841 ERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII---------ERADKFGLAQLYQLRGRVGRS--NKQAYAYFL 909 (1139)
T ss_pred HHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE---------eccccccHHHHHHhccccCCc--cceEEEEEe
Confidence 999999999999999999999999999999996655551 222335689999999999997 489999999
Q ss_pred ecCCh
Q 000114 1725 CHAPR 1729 (2158)
Q Consensus 1725 ~~~~~ 1729 (2158)
+.+.+
T Consensus 910 ~p~~k 914 (1139)
T COG1197 910 YPPQK 914 (1139)
T ss_pred ecCcc
Confidence 98754
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.6e-21 Score=216.15 Aligned_cols=312 Identities=22% Similarity=0.275 Sum_probs=209.8
Q ss_pred CCCHHHHHHHHHHH---cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSAL---SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l---~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
+|++.|+.+-..++ ...+.+||.|-||||||....-.|-+.+.++ .++.+.+|+...|-|++.+++
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G-----------~~vciASPRvDVclEl~~Rlk 165 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG-----------GRVCIASPRVDVCLELYPRLK 165 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC-----------CeEEEecCcccchHHHHHHHH
Confidence 79999999877665 4566799999999999998776766666543 479999999999999999999
Q ss_pred hhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHH
Q 000114 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTV 651 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~ 651 (2158)
..|. ++.+..++|+....- .++++|+|... +.|. -+.++++||||+|-..-.-.+.+...+...
T Consensus 166 ~aF~--~~~I~~Lyg~S~~~f----r~plvVaTtHQ---LlrF------k~aFD~liIDEVDAFP~~~d~~L~~Av~~a- 229 (441)
T COG4098 166 QAFS--NCDIDLLYGDSDSYF----RAPLVVATTHQ---LLRF------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKA- 229 (441)
T ss_pred Hhhc--cCCeeeEecCCchhc----cccEEEEehHH---HHHH------HhhccEEEEeccccccccCCHHHHHHHHHh-
Confidence 9876 467888999875433 37889988775 3332 235799999999976544455566555543
Q ss_pred HHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCC--cccccceeEEEeeccCChhHHHHHhhHHHHHHHHH
Q 000114 652 RQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNS--YRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA 729 (2158)
Q Consensus 652 ~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~--~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~ 729 (2158)
....--+|.||||.++ .+.+-+... .......... -+|.|+...+....-.+...+ +.+...++..+..
T Consensus 230 -----rk~~g~~IylTATp~k--~l~r~~~~g-~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r-~kl~~kl~~~lek 300 (441)
T COG4098 230 -----RKKEGATIYLTATPTK--KLERKILKG-NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQR-NKLPLKLKRWLEK 300 (441)
T ss_pred -----hcccCceEEEecCChH--HHHHHhhhC-CeeEeecchhhcCCCCCCCceEEeccHHHHhhh-ccCCHHHHHHHHH
Confidence 2344567999999763 222222111 0111112222 234444333222111111111 1122223333443
Q ss_pred HhC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHH
Q 000114 730 VAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2158)
Q Consensus 730 ~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~ 808 (2158)
+.. +.|++||+++....+++|..|...... ..++..|+. ..+
T Consensus 301 q~~~~~P~liF~p~I~~~eq~a~~lk~~~~~-----------------------------------~~i~~Vhs~--d~~ 343 (441)
T COG4098 301 QRKTGRPVLIFFPEIETMEQVAAALKKKLPK-----------------------------------ETIASVHSE--DQH 343 (441)
T ss_pred HHhcCCcEEEEecchHHHHHHHHHHHhhCCc-----------------------------------cceeeeecc--Ccc
Confidence 333 679999999999999999988654211 124455663 467
Q ss_pred HHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcC
Q 000114 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887 (2158)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~ 887 (2158)
|.+..+.|++|++++||+|.+|+|||.+|+++|.+-+. +. .-++.+.++|++||+||.---..|..+.+-.
T Consensus 344 R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlga-----eh---~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 344 RKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGA-----EH---RVFTESALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred HHHHHHHHHcCceEEEEEeehhhcccccccceEEEecC-----Cc---ccccHHHHHHHhhhccCCCcCCCCcEEEEec
Confidence 88899999999999999999999999999999988532 21 2257789999999999975445576655533
|
|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-21 Score=249.79 Aligned_cols=431 Identities=16% Similarity=0.202 Sum_probs=281.9
Q ss_pred HHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEE
Q 000114 1344 PIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV 1423 (2158)
Q Consensus 1344 ~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~ 1423 (2158)
+.+.+.+.++ +.+..++|+|.||||||+-....|+....... +..++|+..|+|--|..+++++....+...|-.|+
T Consensus 176 ~~r~~Il~~i-~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VG 252 (924)
T KOG0920|consen 176 KMRDTILDAI-EENQVVVISGETGCGKTTQVPQFILDEAIESG--AACNIICTQPRRISAISVAERVAKERGESLGEEVG 252 (924)
T ss_pred HHHHHHHHHH-HhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--CCCeEEecCCchHHHHHHHHHHHHHhccccCCeee
Confidence 4455555554 56888999999999999998888888776643 44589999999999999999988776665665554
Q ss_pred EEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCce
Q 000114 1424 ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIR 1503 (2158)
Q Consensus 1424 ~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~r 1503 (2158)
.-.+-.+ +.-..+.+.+||.+.+. |+......+..+..+|+||+|.-.-. ... ++--++.+... .++.+
T Consensus 253 Yqvrl~~---~~s~~t~L~fcTtGvLL---r~L~~~~~l~~vthiivDEVHER~i~-~Df---lLi~lk~lL~~-~p~Lk 321 (924)
T KOG0920|consen 253 YQVRLES---KRSRETRLLFCTTGVLL---RRLQSDPTLSGVTHIIVDEVHERSIN-TDF---LLILLKDLLPR-NPDLK 321 (924)
T ss_pred EEEeeec---ccCCceeEEEecHHHHH---HHhccCcccccCceeeeeeEEEccCC-ccc---HHHHHHHHhhh-CCCce
Confidence 4333211 12234789999999754 44444678999999999999954321 122 33333444333 47999
Q ss_pred EEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEe-------cccccchHHH----------------HHhcC
Q 000114 1504 IVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQ-------GVDITNFEAR----------------MQAMT 1560 (2158)
Q Consensus 1504 iV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~-------~~~~~~~~~~----------------~~~~~ 1560 (2158)
+|+||||+ |++.+..|+|..+ ++.... |..|+..++. .+........ ...++
T Consensus 322 vILMSAT~-dae~fs~YF~~~p--vi~i~g--rtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id 396 (924)
T KOG0920|consen 322 VILMSATL-DAELFSDYFGGCP--VITIPG--RTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEID 396 (924)
T ss_pred EEEeeeec-chHHHHHHhCCCc--eEeecC--CCcchHHHHHHHHHHHhcccccccccccccccCccccccchhcccccc
Confidence 99999998 7899999998543 222221 1111111110 0000000000 00122
Q ss_pred hHHHHHHHHhH---hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEE
Q 000114 1561 KPTFTAIVQHA---KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2158)
Q Consensus 1561 k~~~~~i~~~~---~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~ 1637 (2158)
......+..++ ...+.+|||.|+...+..+...|...+...+. ...-|.
T Consensus 397 ~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~----------------------------~~~~il 448 (924)
T KOG0920|consen 397 YDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADS----------------------------LKFAIL 448 (924)
T ss_pred HHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccc----------------------------cceEEE
Confidence 23333333333 33567999999999998888777432221110 123378
Q ss_pred EecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEe----cceeecCCCCc----CcCCCHHHHHHhhcc
Q 000114 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVM----GTQYYDGQENA----HTDYPVTDLLQMMGH 1709 (2158)
Q Consensus 1638 ~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~----gt~~yd~~~~~----~~~~s~~~~lQr~GR 1709 (2158)
.+|+.|+..+++.|+.....|..+|++||+.++.+|.+|++..||- .-..||+..+. ....|.....||.||
T Consensus 449 plHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GR 528 (924)
T KOG0920|consen 449 PLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGR 528 (924)
T ss_pred eccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhccc
Confidence 9999999999999999999999999999999999999999999993 23568887544 234578889999999
Q ss_pred CCCCCCCCceEEEEEecCChHHHHHHHhhCCCccccchhhHHHHHHHHHHhcCc-CCCHHHHHHHHHHhhhhhhhccCCC
Q 000114 1710 ASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGV-IENKQDAVDYLTWTFMYRRLTQNPN 1788 (2158)
Q Consensus 1710 aGR~g~d~~G~~iil~~~~~~~~~~k~l~~~~piES~L~~~l~d~l~aeI~~~~-i~~~qd~id~l~~t~~yrRl~~nP~ 1788 (2158)
|||. ..|.||-++... .|.++... .++-..+...|. |++... +....+..+ |.-++...|+
T Consensus 529 AGRv---~~G~cy~L~~~~---~~~~~~~~-~q~PEilR~pL~-----~l~L~iK~l~~~~~~~------fLskaldpP~ 590 (924)
T KOG0920|consen 529 AGRV---RPGICYHLYTRS---RYEKLMLA-YQLPEILRTPLE-----ELCLHIKVLEQGSIKA------FLSKALDPPP 590 (924)
T ss_pred ccCc---cCCeeEEeechh---hhhhcccc-cCChHHHhChHH-----HhhheeeeccCCCHHH------HHHHhcCCCC
Confidence 9995 699999998874 34444331 111122211121 111110 111111112 2334556665
Q ss_pred CccCCCCCcccHHHHHHHHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCCC
Q 000114 1789 YYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKT 1859 (2158)
Q Consensus 1789 ~Y~~~~~~~~~~~~~l~~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~ 1859 (2158)
- +.|..++..|.+.|.+..++ ..|.+|+.+|.+++++.-.+++..+.--++
T Consensus 591 ~----------------~~v~~a~~~L~~igaL~~~e----~LT~LG~~la~lPvd~~igK~ll~g~if~c 641 (924)
T KOG0920|consen 591 A----------------DAVDLAIERLKQIGALDESE----ELTPLGLHLASLPVDVRIGKLLLFGAIFGC 641 (924)
T ss_pred h----------------HHHHHHHHHHHHhccccCcc----cchHHHHHHHhCCCccccchhheehhhccc
Confidence 3 67899999999999996543 688899999999999999888775443333
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.6e-21 Score=242.81 Aligned_cols=299 Identities=16% Similarity=0.171 Sum_probs=194.7
Q ss_pred CCCCCHHHHHHHHHHhcC---CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1339 FKHFNPIQTQVFTVLYNT---DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~---~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
...++++|.+++.++.+. ++..++++|||+|||+++..++- .+. . +++||+|+++|+.|+.+.+.+.+.
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~-~~~-----~--~~Lvlv~~~~L~~Qw~~~~~~~~~ 105 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIA-ELK-----R--STLVLVPTKELLDQWAEALKKFLL 105 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHH-Hhc-----C--CEEEEECcHHHHHHHHHHHHHhcC
Confidence 346999999999999884 66699999999999999966554 222 2 599999999999999988875544
Q ss_pred CCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHH
Q 000114 1416 QGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIA 1495 (2158)
Q Consensus 1416 ~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~ 1495 (2158)
. ...++.+.|+..... ...|.|+|-..+...- .........+++||+||||++.... +..+...+
T Consensus 106 ~--~~~~g~~~~~~~~~~----~~~i~vat~qtl~~~~--~l~~~~~~~~~liI~DE~Hh~~a~~---~~~~~~~~---- 170 (442)
T COG1061 106 L--NDEIGIYGGGEKELE----PAKVTVATVQTLARRQ--LLDEFLGNEFGLIIFDEVHHLPAPS---YRRILELL---- 170 (442)
T ss_pred C--ccccceecCceeccC----CCcEEEEEhHHHhhhh--hhhhhcccccCEEEEEccccCCcHH---HHHHHHhh----
Confidence 2 234666666544321 1579999977654321 0111223369999999999997543 22222221
Q ss_pred hhcCCCce-EEEeccCCCChH-----HHHHHhccCCCceEecCC-------CCcccccEEEEecccccc------hH---
Q 000114 1496 SQVENKIR-IVALSTSLANAK-----DLGEWIGATSHGLFNFPP-------GVRPVPLEIHIQGVDITN------FE--- 1553 (2158)
Q Consensus 1496 ~~~~~~~r-iV~lSATl~n~~-----dl~~wl~~~~~~i~~f~~-------~~rpv~l~~~i~~~~~~~------~~--- 1553 (2158)
. ... ++|||||++..+ ++...+| ..++.+.. ...|..+........... ..
T Consensus 171 ---~-~~~~~LGLTATp~R~D~~~~~~l~~~~g---~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~ 243 (442)
T COG1061 171 ---S-AAYPRLGLTATPEREDGGRIGDLFDLIG---PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARF 243 (442)
T ss_pred ---h-cccceeeeccCceeecCCchhHHHHhcC---CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhh
Confidence 1 233 899999976432 3444444 12222221 112211111111011000 00
Q ss_pred ----------------HHHHhcChHHHHHHHHhHh---cCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcc
Q 000114 1554 ----------------ARMQAMTKPTFTAIVQHAK---NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAE 1614 (2158)
Q Consensus 1554 ----------------~~~~~~~k~~~~~i~~~~~---~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~ 1614 (2158)
.............+...+. .+.+++|||.+..++..++..+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~------------------ 305 (442)
T COG1061 244 RELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLA------------------ 305 (442)
T ss_pred hhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcC------------------
Confidence 0111111222222222222 467999999999999999866621
Q ss_pred cchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCc
Q 000114 1615 EVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENA 1694 (2158)
Q Consensus 1615 ~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~ 1694 (2158)
..++..+.+..+..+|..+++.|+.|.+++||++.++..|+|+|++.++|+-.+
T Consensus 306 ------------------~~~~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~-------- 359 (442)
T COG1061 306 ------------------PGIVEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRP-------- 359 (442)
T ss_pred ------------------CCceEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCC--------
Confidence 111678899999999999999999999999999999999999998888874322
Q ss_pred CcCCCHHHHHHhhccCCCC
Q 000114 1695 HTDYPVTDLLQMMGHASRP 1713 (2158)
Q Consensus 1695 ~~~~s~~~~lQr~GRaGR~ 1713 (2158)
.-|...|+||+||.-|+
T Consensus 360 --t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 360 --TGSRRLFIQRLGRGLRP 376 (442)
T ss_pred --CCcHHHHHHHhhhhccC
Confidence 22789999999999995
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=246.57 Aligned_cols=316 Identities=19% Similarity=0.255 Sum_probs=226.9
Q ss_pred hHhhc-CCCC-CCCHHHHHHHHHHHcC---CC--cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 486 AQPAF-KGMT-QLNRVQSRVYKSALSS---AD--NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 486 ~~~~f-~g~~-~l~~iQ~~~i~~~l~~---~~--nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.+..| .+|. .-|+=|..||..+... .. +=||||.-|-|||.+|+-+++..+..+ .+|.++||
T Consensus 583 ~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G-----------KQVAvLVP 651 (1139)
T COG1197 583 WQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG-----------KQVAVLVP 651 (1139)
T ss_pred HHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC-----------CeEEEEcc
Confidence 34444 3342 5799999999988653 22 359999999999999999999988754 48999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeec
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDE 631 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDE 631 (2158)
|.-||+|-+++|+++|+.++++|..+..-.+...+. .+..||+|+|.- +..+. ..+++++|+||||
T Consensus 652 TTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL~kd---v~FkdLGLlIIDE 724 (1139)
T COG1197 652 TTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LLSKD---VKFKDLGLLIIDE 724 (1139)
T ss_pred cHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH----hhCCC---cEEecCCeEEEec
Confidence 999999999999999999999999988755443322 357899999975 23222 4678899999999
Q ss_pred ccccccCChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHH-HHHhccccCceEEecCCcccccceeEEEeeccC
Q 000114 632 IHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVA-LFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK 710 (2158)
Q Consensus 632 aH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~-~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~ 710 (2158)
-|+.+=.. .. .+.....++-++-||||.-+ ..+. ...+.. .-.+. -.+..+..|+...+..+
T Consensus 725 EqRFGVk~----KE-------kLK~Lr~~VDvLTLSATPIP-RTL~Msm~GiR-dlSvI-~TPP~~R~pV~T~V~~~--- 787 (1139)
T COG1197 725 EQRFGVKH----KE-------KLKELRANVDVLTLSATPIP-RTLNMSLSGIR-DLSVI-ATPPEDRLPVKTFVSEY--- 787 (1139)
T ss_pred hhhcCccH----HH-------HHHHHhccCcEEEeeCCCCc-chHHHHHhcch-hhhhc-cCCCCCCcceEEEEecC---
Confidence 99864221 11 12234568999999999432 2221 122211 00011 11111222333222211
Q ss_pred ChhHHHHHhhHHHHHHH-HHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchh
Q 000114 711 KPLQRFQLMNDLCYEKV-VAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (2158)
Q Consensus 711 ~~~~~~~~l~~~~~~~i-~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 789 (2158)
+. ..+.+.+ .+...++|+-..+|..+..++.+..|++.-..
T Consensus 788 d~--------~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPE------------------------------ 829 (1139)
T COG1197 788 DD--------LLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPE------------------------------ 829 (1139)
T ss_pred Ch--------HHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCc------------------------------
Confidence 11 1122222 34556899998899999999999998875322
Q ss_pred hhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhc
Q 000114 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (2158)
Q Consensus 790 ~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~G 869 (2158)
..|++-||.|+..+-+.++..|-+|+.+|||||.+.+.|||+|+.+-+|- .+.. -+..+++.|.-|
T Consensus 830 -----arI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII----e~AD-----~fGLsQLyQLRG 895 (1139)
T COG1197 830 -----ARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIII----ERAD-----KFGLAQLYQLRG 895 (1139)
T ss_pred -----eEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE----eccc-----cccHHHHHHhcc
Confidence 24788899999999999999999999999999999999999999987664 3333 368999999999
Q ss_pred ccCCCCCCCccEEEEEcCCCc
Q 000114 870 RAGRPQYDSYGEGIIITGHSE 890 (2158)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~~ 890 (2158)
|.||.. ..|.||+++.+.+
T Consensus 896 RVGRS~--~~AYAYfl~p~~k 914 (1139)
T COG1197 896 RVGRSN--KQAYAYFLYPPQK 914 (1139)
T ss_pred ccCCcc--ceEEEEEeecCcc
Confidence 999965 7899999998754
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-20 Score=243.54 Aligned_cols=372 Identities=22% Similarity=0.238 Sum_probs=251.3
Q ss_pred CCCCCHHHHHHHHHHHcC---CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000114 493 MTQLNRVQSRVYKSALSS---ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~---~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~ 569 (2158)
...+|+-|+.++..+..+ ....|+.+.||||||.+|+-.|-+.+.+++ .+|+++|-.+|..|+..+
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk-----------qvLvLVPEI~Ltpq~~~r 264 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK-----------QVLVLVPEIALTPQLLAR 264 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCC-----------EEEEEeccccchHHHHHH
Confidence 347899999999998766 467899999999999999999999888653 799999999999999999
Q ss_pred HHhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccc--cCCh
Q 000114 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH--DNRG 640 (2158)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~--d~rg 640 (2158)
|+.+|+ .+|.+++++.+...+. .++..|+|+| ++.-+..+.++++|||||-|--. ...+
T Consensus 265 f~~rFg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt---------RSAlF~Pf~~LGLIIvDEEHD~sYKq~~~ 332 (730)
T COG1198 265 FKARFG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGT---------RSALFLPFKNLGLIIVDEEHDSSYKQEDG 332 (730)
T ss_pred HHHHhC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEe---------chhhcCchhhccEEEEeccccccccCCcC
Confidence 999875 6899999988766542 3578999999 44445678999999999999542 2344
Q ss_pred hhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcccc-CceEEecCCcccc-cceeEEEeeccCChhHHHHH
Q 000114 641 PVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLE-KGLFYFDNSYRPV-PLSQQYIGIQVKKPLQRFQL 718 (2158)
Q Consensus 641 ~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~-~~~~~f~~~~rpv-~l~~~~~~~~~~~~~~~~~~ 718 (2158)
+.+. +|-....+....++++|+-||| |. +..|.++... .....+...+... +....++.+........ ..
T Consensus 333 prYh---ARdvA~~Ra~~~~~pvvLgSAT-PS---LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~-~~ 404 (730)
T COG1198 333 PRYH---ARDVAVLRAKKENAPVVLGSAT-PS---LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETG-RS 404 (730)
T ss_pred CCcC---HHHHHHHHHHHhCCCEEEecCC-CC---HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccC-cc
Confidence 4443 2333334445678999999999 44 4445444211 1233344433322 44445554443322111 11
Q ss_pred hhHHHHHHHHHHhC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHh----------hhhccC--
Q 000114 719 MNDLCYEKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQS----------HTDMVK-- 785 (2158)
Q Consensus 719 l~~~~~~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~-- 785 (2158)
+...+++.+.+... +.|+|+|+|.|.-+..+...=|..-..+......+.-+.......+. .+..|.
T Consensus 405 lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~ 484 (730)
T COG1198 405 LSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSE 484 (730)
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCC
Confidence 55666777766655 78999999999877655444333322222221111111111111111 111221
Q ss_pred ------------cchhhhhcc-CCeEEecCCCCHHH--HHHHHHHHhCCCceEEEechhhhhccCCCceEE--EEecccc
Q 000114 786 ------------SNDLKDLLP-YGFAIHHAGMTRGD--RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTV--IIKGTQI 848 (2158)
Q Consensus 786 ------------~~~l~~ll~-~gv~~hHagl~~~~--R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~v--VI~~~~~ 848 (2158)
.+.|+.++| ..|...-++.+... -+..++.|.+|+++|||.|..++.|.|+|+++. |++.+..
T Consensus 485 ~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~ 564 (730)
T COG1198 485 HLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTG 564 (730)
T ss_pred eeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhh
Confidence 123444443 44555555554432 356788999999999999999999999999987 6666666
Q ss_pred cCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHh
Q 000114 849 YNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSL 897 (2158)
Q Consensus 849 yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~l 897 (2158)
...+..|..|-..+.+.|-+|||||.+ ..|.++|.|..++...+..+
T Consensus 565 L~~~DfRA~Er~fqll~QvaGRAgR~~--~~G~VvIQT~~P~hp~i~~~ 611 (730)
T COG1198 565 LGSPDFRASERTFQLLMQVAGRAGRAG--KPGEVVIQTYNPDHPAIQAL 611 (730)
T ss_pred hcCCCcchHHHHHHHHHHHHhhhccCC--CCCeEEEEeCCCCcHHHHHH
Confidence 666677888889999999999999965 67999999998875554433
|
|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=230.20 Aligned_cols=445 Identities=19% Similarity=0.181 Sum_probs=275.7
Q ss_pred HHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhh---cCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEE
Q 000114 1348 QVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA---SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVE 1424 (2158)
Q Consensus 1348 q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~---~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ 1424 (2158)
++..++.+ +.-|||||.||||||...-..+...--.. ...| .+=|..|+|.-|..++++....++. +|..|+.
T Consensus 263 ~IMEaIn~-n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~g--mIGITqPRRVAaiamAkRVa~EL~~-~~~eVsY 338 (1172)
T KOG0926|consen 263 RIMEAINE-NPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPG--MIGITQPRRVAAIAMAKRVAFELGV-LGSEVSY 338 (1172)
T ss_pred HHHHHhhc-CCeEEEecCCCCCccccchHHHHHcccCCccCCCCC--eeeecCchHHHHHHHHHHHHHHhcc-CccceeE
Confidence 45555544 66799999999999976433333321111 1123 5668999999999999998887776 3555544
Q ss_pred EcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCC----
Q 000114 1425 LTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN---- 1500 (2158)
Q Consensus 1425 ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~---- 1500 (2158)
... .+...-..+.|.++|.+. ++|.......+..++.||+||||.-. .....+--.++|+-.+...+..
T Consensus 339 qIR---fd~ti~e~T~IkFMTDGV---LLrEi~~DflL~kYSvIIlDEAHERS-vnTDILiGmLSRiV~LR~k~~ke~~~ 411 (1172)
T KOG0926|consen 339 QIR---FDGTIGEDTSIKFMTDGV---LLREIENDFLLTKYSVIILDEAHERS-VNTDILIGMLSRIVPLRQKYYKEQCQ 411 (1172)
T ss_pred EEE---eccccCCCceeEEecchH---HHHHHHHhHhhhhceeEEechhhhcc-chHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 321 111222456899999997 45555567788999999999999432 1233444467777666655444
Q ss_pred --CceEEEeccCCCChHHHHHHhccCCCceEecCC-----CCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhc
Q 000114 1501 --KIRIVALSTSLANAKDLGEWIGATSHGLFNFPP-----GVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKN 1573 (2158)
Q Consensus 1501 --~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~-----~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~ 1573 (2158)
+.++|.|||||. ..|+.+ . ..+|...| ..|..|+.+|+..-...+|..... .....|.+. .+
T Consensus 412 ~kpLKLIIMSATLR-VsDFte---n--k~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAf----rKtc~IH~k-LP 480 (1172)
T KOG0926|consen 412 IKPLKLIIMSATLR-VSDFTE---N--KRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAF----RKTCKIHKK-LP 480 (1172)
T ss_pred cCceeEEEEeeeEE-eccccc---C--ceecCCCCceeeeecccCceEEEeccCCCchHHHHHH----HHHHHHhhc-CC
Confidence 899999999983 333321 1 12333332 347778888887665555433211 112233344 56
Q ss_pred CCCEEEEecChHHHHHHHHHHHhhcccCCc--------------cc-cc-------ccCCCcccchhhHhh---------
Q 000114 1574 EKPALVFVPSRKYVRLTAVDLMTYSSMDGD--------------QK-SA-------FLLWPAEEVEPFIDN--------- 1622 (2158)
Q Consensus 1574 ~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~--------------~~-~~-------~l~~~~~~l~~~~~~--------- 1622 (2158)
.+.+|||+.....+..++..|.......-. .. .. ......+.+..-.+.
T Consensus 481 ~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~ 560 (1172)
T KOG0926|consen 481 PGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSG 560 (1172)
T ss_pred CCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhccc
Confidence 778999999999999999999776331100 00 00 000000000000000
Q ss_pred -------------------------hhHHHHHHHhc--------ccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCcc
Q 000114 1623 -------------------------IQEEMLKATLR--------HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSM 1669 (2158)
Q Consensus 1623 -------------------------i~d~~L~~~l~--------~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~l 1669 (2158)
..+..+....+ .-|..+++-|+.+++.+|++.-..|..-++|||+++
T Consensus 561 ~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVA 640 (1172)
T KOG0926|consen 561 FASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVA 640 (1172)
T ss_pred chhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccch
Confidence 00111111111 127888999999999999999999999999999999
Q ss_pred ccccCCCccEEEEec----ceeecCCCCc---C-cCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH-HHHHHhh--
Q 000114 1670 CWGVPLTAHLVVVMG----TQYYDGQENA---H-TDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE-YYKKFLY-- 1738 (2158)
Q Consensus 1670 a~Gvdlp~~~vVI~g----t~~yd~~~~~---~-~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~-~~~k~l~-- 1738 (2158)
+.++.+|++..||-+ +..||...+. . ...|..+--||+|||||.| .|.||-++.+.-.+ .|..|-.
T Consensus 641 ETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGHcYRLYSSAVf~~~Fe~fS~PE 717 (1172)
T KOG0926|consen 641 ETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGHCYRLYSSAVFSNDFEEFSLPE 717 (1172)
T ss_pred hcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCceeehhhhHHhhcchhhhccHH
Confidence 999999999999943 3457665432 1 1356777889999999975 99999998874322 1221110
Q ss_pred -CCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccHHHHHHHHHHHHHHHHHh
Q 000114 1739 -DAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEA 1817 (2158)
Q Consensus 1739 -~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~lve~~l~~L~~ 1817 (2158)
-..|+|+-+ -...+..|.+.-. |.|- ..|. ...++.+...|..
T Consensus 718 Ilk~Pve~lv---------LqMKsMnI~kVvn--------FPFP---tpPd----------------~~~L~~Aer~L~~ 761 (1172)
T KOG0926|consen 718 ILKKPVESLV---------LQMKSMNIDKVVN--------FPFP---TPPD----------------RSALEKAERRLKA 761 (1172)
T ss_pred HhhCcHHHHH---------HHHHhcCccceec--------CCCC---CCcc----------------HHHHHHHHHHHHH
Confidence 011333322 1122222222110 1110 1111 1467899999999
Q ss_pred CCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCC
Q 000114 1818 SKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTP 1857 (2158)
Q Consensus 1818 ~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~ 1857 (2158)
.|++..+ -..|.+|..+|.|+++|+-.+++..+...
T Consensus 762 LgALd~~----g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~ 797 (1172)
T KOG0926|consen 762 LGALDSN----GGLTKLGKAMSLFPLSPRFSKMLATSDQH 797 (1172)
T ss_pred hcccccc----CCcccccchhcccccChhHHHHHHHHHhh
Confidence 9999542 26788899999999999999998865443
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-21 Score=225.95 Aligned_cols=291 Identities=18% Similarity=0.251 Sum_probs=187.0
Q ss_pred eEEEEEcccHHHHHHHHHHHHHHhcCCC---CcEEEEEcCCcch-h-hhcc-cCCcEEEeCHHHHHHHHhhhhccccccc
Q 000114 1391 MRAVYIAPLEALAKERYRDWEIKFGQGL---GMRVVELTGETAM-D-LKLL-EKGQIIISTPEKWDALSRRWKQRKYVQQ 1464 (2158)
Q Consensus 1391 ~~~v~IaP~raLa~q~~~~~~~~f~~~~---g~~v~~ltG~~~~-~-~~~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~ 1464 (2158)
|.+|++-|.++|+.|.++.+. +|.... .++...+.|+... + .+.+ ...+|+|+||++++.+... ....+.+
T Consensus 287 p~avivepsrelaEqt~N~i~-~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~--g~~~lt~ 363 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIE-EFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK--GLVTLTH 363 (725)
T ss_pred cceeEecCcHHHHHHHHhhHH-HHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc--cceeeee
Confidence 589999999999999999776 555331 2343344554332 2 2233 4459999999999988765 4557889
Q ss_pred eeEEEecccccccCCCCChHHHHHHHHH----HHHhhcCCCceEEEeccCCCCh--HHHH-------HHhccCCCc----
Q 000114 1465 VSLFIIDELHLIGGQGGPVLEVIVSRMR----YIASQVENKIRIVALSTSLANA--KDLG-------EWIGATSHG---- 1527 (2158)
Q Consensus 1465 v~llIiDEaH~l~~~~g~~~e~~isrl~----~i~~~~~~~~riV~lSATl~n~--~dl~-------~wl~~~~~~---- 1527 (2158)
++++|+||++.++... +...+.|+. .+.+. ....+.+.+|||+.-. ..++ .|.......
T Consensus 364 crFlvlDead~lL~qg---y~d~I~r~h~qip~~tsd-g~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpe 439 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQG---YDDKIYRFHGQIPHMTSD-GFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPE 439 (725)
T ss_pred eEEEEecchhhhhhcc---cHHHHHHHhccchhhhcC-CcccccceeeeEEeEEEeeehhhhhccCceeEecccccccch
Confidence 9999999999887543 344555543 33222 3568899999998542 2222 344332211
Q ss_pred -eEec----CCCCcc--cccEEEEe------------cccccchHHHHHhcCh--HHHHHHHHhHhcCCCEEEEecChHH
Q 000114 1528 -LFNF----PPGVRP--VPLEIHIQ------------GVDITNFEARMQAMTK--PTFTAIVQHAKNEKPALVFVPSRKY 1586 (2158)
Q Consensus 1528 -i~~f----~~~~rp--v~l~~~i~------------~~~~~~~~~~~~~~~k--~~~~~i~~~~~~~~~~IVFv~sr~~ 1586 (2158)
+..+ .|.... ..+..++. +...+...+....+.+ ....++.+ ....++||||.|+..
T Consensus 440 tvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~--h~mdkaiifcrtk~d 517 (725)
T KOG0349|consen 440 TVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRR--HAMDKAIIFCRTKQD 517 (725)
T ss_pred hhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhh--hccCceEEEEecccc
Confidence 1111 010000 00000000 0000111111111111 11222323 356789999999999
Q ss_pred HHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEec
Q 000114 1587 VRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMS 1666 (2158)
Q Consensus 1587 ~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT 1666 (2158)
|..+-+.+.+.-. -.+.+..+|++..+.+|+.-++.|+.+.++.||||
T Consensus 518 cDnLer~~~qkgg--------------------------------~~~scvclhgDrkP~Erk~nle~Fkk~dvkflict 565 (725)
T KOG0349|consen 518 CDNLERMMNQKGG--------------------------------KHYSCVCLHGDRKPDERKANLESFKKFDVKFLICT 565 (725)
T ss_pred chHHHHHHHHcCC--------------------------------ccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEe
Confidence 9877765543211 23458899999999999999999999999999999
Q ss_pred CccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC-hHHHHH
Q 000114 1667 SSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP-RKEYYK 1734 (2158)
Q Consensus 1667 ~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~-~~~~~~ 1734 (2158)
++++||+|+..+-++| |...|-..+.|+||+||.||+ .+.|.++.++... ++-.|.
T Consensus 566 dvaargldi~g~p~~i----------nvtlpd~k~nyvhrigrvgra--ermglaislvat~~ekvwyh 622 (725)
T KOG0349|consen 566 DVAARGLDITGLPFMI----------NVTLPDDKTNYVHRIGRVGRA--ERMGLAISLVATVPEKVWYH 622 (725)
T ss_pred hhhhccccccCCceEE----------EEecCcccchhhhhhhccchh--hhcceeEEEeeccchheeeh
Confidence 9999999999999999 555666789999999999997 4788888776554 333343
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=248.74 Aligned_cols=335 Identities=18% Similarity=0.216 Sum_probs=192.5
Q ss_pred CCCCHHHHHHHHHHH----cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000114 494 TQLNRVQSRVYKSAL----SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l----~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~ 569 (2158)
..++++|.+|+..+. .+.++.|+++|||||||.+++..+.+.+... ...+|||++|+++|+.|..+.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~---------~~~rVLfLvDR~~L~~Qa~~~ 482 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAK---------RFRRILFLVDRSALGEQAEDA 482 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcC---------ccCeEEEEecHHHHHHHHHHH
Confidence 358999999998765 3456799999999999998765554444332 124899999999999999999
Q ss_pred HHhhcccCCcEEEEEeCCCccCHh-hhccccEEEcchhHHH-HHHhcc--CCCccccccceEEeeccccccc-CC----h
Q 000114 570 LSNRLQMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKWD-IITRKS--GDRTYTQLVKLLIIDEIHLLHD-NR----G 640 (2158)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPekld-~l~r~~--~~~~~l~~v~lIIiDEaH~l~d-~r----g 640 (2158)
|.......+..+..+.+-..+... .....+|+|||..++. .+.... .....+..+++|||||||+-.. .+ |
T Consensus 483 F~~~~~~~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 483 FKDTKIEGDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred HHhcccccccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 987532222122112111111111 1235789999999862 222111 1113467789999999998421 00 0
Q ss_pred ----hhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEec-------C---Ccc-cccceeEE-
Q 000114 641 ----PVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFD-------N---SYR-PVPLSQQY- 704 (2158)
Q Consensus 641 ----~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~-------~---~~r-pv~l~~~~- 704 (2158)
.............+.. . +...||||||+. . .-..+++. +++.++ + .+. |......+
T Consensus 563 ~~~~~~~~~~~~~yr~iL~y-F-dA~~IGLTATP~-r-~t~~~FG~----pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~ 634 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDY-F-DAVKIGLTATPA-L-HTTEIFGE----PVYTYSYREAVIDGYLIDHEPPIRIETRLS 634 (1123)
T ss_pred hhccchhhhHHHHHHHHHhh-c-CccEEEEecCCc-c-chhHHhCC----eeEEeeHHHHHhcCCcccCcCCEEEEEEec
Confidence 0001111222222221 1 356799999953 2 22233331 111110 0 000 11111000
Q ss_pred -EeeccCC------------h------hH----HHHH---------hhHHHHHHHHHHh---CCCeEEEEecChHHHHHH
Q 000114 705 -IGIQVKK------------P------LQ----RFQL---------MNDLCYEKVVAVA---GKHQVLIFVHSRKETAKT 749 (2158)
Q Consensus 705 -~~~~~~~------------~------~~----~~~~---------l~~~~~~~i~~~~---~~~~vLVFv~sr~~~~~~ 749 (2158)
.|+.... . .. .... .+..+...+.+.. ..+++||||.++.+|..+
T Consensus 635 ~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i 714 (1123)
T PRK11448 635 QEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMV 714 (1123)
T ss_pred cccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHH
Confidence 0000000 0 00 0001 1112222233222 247999999999999999
Q ss_pred HHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCc-eEEEech
Q 000114 750 ARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV-QVLVSTA 828 (2158)
Q Consensus 750 a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i-~VLVaT~ 828 (2158)
+..|.+....... ..-...+...||+++ ++..+++.|+++.. +|+|+++
T Consensus 715 ~~~L~~~f~~~~~----------------------------~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvd 764 (1123)
T PRK11448 715 VRLLKEAFKKKYG----------------------------QVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVD 764 (1123)
T ss_pred HHHHHHHHHhhcC----------------------------CcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEec
Confidence 9988764311000 000112344577765 56789999999987 7999999
Q ss_pred hhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCC-CccEEEEE
Q 000114 829 TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD-SYGEGIII 885 (2158)
Q Consensus 829 tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d-~~G~~iil 885 (2158)
++.+|+|+|.+.+||. +.+.+ |...|+||+||+.|.-.+ .+-.++|+
T Consensus 765 mL~TG~DvP~v~~vVf----~rpvk------S~~lf~QmIGRgtR~~~~~~K~~f~I~ 812 (1123)
T PRK11448 765 LLTTGIDVPSICNLVF----LRRVR------SRILYEQMLGRATRLCPEIGKTHFRIF 812 (1123)
T ss_pred ccccCCCcccccEEEE----ecCCC------CHHHHHHHHhhhccCCccCCCceEEEE
Confidence 9999999999999997 56655 888999999999996432 23344444
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-19 Score=233.71 Aligned_cols=396 Identities=18% Similarity=0.221 Sum_probs=261.0
Q ss_pred CCCCCHHHHHHHHHHhcC---CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1339 FKHFNPIQTQVFTVLYNT---DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~---~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
...+|+-|..++..+..+ ....++.+.||||||.+|+-+|-..+.+ ++ .+++++|-.+|..|+.++++.+|+
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---Gk--qvLvLVPEI~Ltpq~~~rf~~rFg 270 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---GK--QVLVLVPEIALTPQLLARFKARFG 270 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc---CC--EEEEEeccccchHHHHHHHHHHhC
Confidence 357899999999998765 4679999999999999998888888776 45 899999999999999999999996
Q ss_pred CCCCcEEEEEcCCcchhhh-------cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccccc--CCCCChH--
Q 000114 1416 QGLGMRVVELTGETAMDLK-------LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG--GQGGPVL-- 1484 (2158)
Q Consensus 1416 ~~~g~~v~~ltG~~~~~~~-------~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~--~~~g~~~-- 1484 (2158)
.+|.+++++.+...+ ...+++|||+| +......++++++|||||-|--. ...++.|
T Consensus 271 ----~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt---------RSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhA 337 (730)
T COG1198 271 ----AKVAVLHSGLSPGERYRVWRRARRGEARVVIGT---------RSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHA 337 (730)
T ss_pred ----CChhhhcccCChHHHHHHHHHHhcCCceEEEEe---------chhhcCchhhccEEEEeccccccccCCcCCCcCH
Confidence 478889988776522 12355999999 43445678999999999999543 2333333
Q ss_pred -HHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCC--ceEecCCCC-cccccEEEEecccccchHHHHHhcC
Q 000114 1485 -EVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSH--GLFNFPPGV-RPVPLEIHIQGVDITNFEARMQAMT 1560 (2158)
Q Consensus 1485 -e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~--~i~~f~~~~-rpv~l~~~i~~~~~~~~~~~~~~~~ 1560 (2158)
+..+-|-+ ..++.+|+-|||++ +..|..+... ..+.+.... +..+..+.+........... ..+.
T Consensus 338 RdvA~~Ra~------~~~~pvvLgSATPS----LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~-~~lS 406 (730)
T COG1198 338 RDVAVLRAK------KENAPVVLGSATPS----LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETG-RSLS 406 (730)
T ss_pred HHHHHHHHH------HhCCCEEEecCCCC----HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccC-ccCC
Confidence 33333322 23789999999964 3444444322 222222211 22233333333222111110 1167
Q ss_pred hHHHHHHHHhHhcCCCEEEEecChHHHHHHHHH------------------------HHhhcccCCcccccccCCCcccc
Q 000114 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVD------------------------LMTYSSMDGDQKSAFLLWPAEEV 1616 (2158)
Q Consensus 1561 k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~------------------------L~~~~~~~~~~~~~~l~~~~~~l 1616 (2158)
...+..+.+.+..+.++|+|+|.|-.+-.+... .|++|.........+..|....+
T Consensus 407 ~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L 486 (730)
T COG1198 407 PALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHL 486 (730)
T ss_pred HHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCee
Confidence 888999999999999999999988644222211 12333332222111233333322
Q ss_pred hhh---HhhhhHHHHHHHhcccEEEecCCCCHHH--HHHHHHHHHcCCceEEEecCccccccCCCccEEEE-ec--ceee
Q 000114 1617 EPF---IDNIQEEMLKATLRHGVGYLHEGLNKTD--QEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV-MG--TQYY 1688 (2158)
Q Consensus 1617 ~~~---~~~i~d~~L~~~l~~gv~~~H~~l~~~d--R~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI-~g--t~~y 1688 (2158)
... .+++.++.-+.+....|..+-++.+... -+..+..|.+|+++|||.|+.++.|.|+|+++.|. .+ +-.+
T Consensus 487 ~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~ 566 (730)
T COG1198 487 RAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLG 566 (730)
T ss_pred EEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhc
Confidence 222 4555555555555778888888765543 46788999999999999999999999999988665 22 2222
Q ss_pred cCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhhCCCccccchhhHHHHHHHHHHhcCcCCCHH
Q 000114 1689 DGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQ 1768 (2158)
Q Consensus 1689 d~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~~~~piES~L~~~l~d~l~aeI~~~~i~~~q 1768 (2158)
.+.- +.......-+.|-+|||||.+ ..|.++|.+..++...++..+..
T Consensus 567 ~~Df-RA~Er~fqll~QvaGRAgR~~--~~G~VvIQT~~P~hp~i~~~~~~----------------------------- 614 (730)
T COG1198 567 SPDF-RASERTFQLLMQVAGRAGRAG--KPGEVVIQTYNPDHPAIQALKRG----------------------------- 614 (730)
T ss_pred CCCc-chHHHHHHHHHHHHhhhccCC--CCCeEEEEeCCCCcHHHHHHHhc-----------------------------
Confidence 2211 112234777889999999974 89999999999886555543332
Q ss_pred HHHHHHHHhhhhhhhccCCCCccCCCC
Q 000114 1769 DAVDYLTWTFMYRRLTQNPNYYNLQGV 1795 (2158)
Q Consensus 1769 d~id~l~~t~~yrRl~~nP~~Y~~~~~ 1795 (2158)
|.-.|.....-.|+....|.||.+..+
T Consensus 615 dy~~F~~~El~~Rk~~~~PPf~~l~~v 641 (730)
T COG1198 615 DYEAFYEQELAERKELGLPPFSRLAAV 641 (730)
T ss_pred CHHHHHHHHHHHHHhcCCCChhhheee
Confidence 223344444456777788999987654
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.2e-19 Score=236.72 Aligned_cols=319 Identities=20% Similarity=0.227 Sum_probs=192.5
Q ss_pred CCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhh
Q 000114 495 QLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~ 573 (2158)
.|.|+|..+...++.. ..++|++-..|.|||..+.+.+-..+..+. ..+++||||. .|+.|+..++.++
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~---------~~rvLIVvP~-sL~~QW~~El~~k 221 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGR---------AERVLILVPE-TLQHQWLVEMLRR 221 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCC---------CCcEEEEcCH-HHHHHHHHHHHHH
Confidence 6999999998876654 346999999999999999777665554432 2379999997 8999999999876
Q ss_pred cccCCcEEEEEeCCCccC-----HhhhccccEEEcchhHHHHHHhcc--CCCccccccceEEeecccccccC--ChhhHH
Q 000114 574 LQMYDVKVRELSGDQTLT-----RQQIEETQIIVTTPEKWDIITRKS--GDRTYTQLVKLLIIDEIHLLHDN--RGPVLE 644 (2158)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~-----~~~~~~~~IiV~TPekld~l~r~~--~~~~~l~~v~lIIiDEaH~l~d~--rg~~le 644 (2158)
|. +.+..+.++.... .......+++|+|.+.+ .+.. .....-...++|||||||++... ......
T Consensus 222 F~---l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l---~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y 295 (956)
T PRK04914 222 FN---LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFL---RRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREY 295 (956)
T ss_pred hC---CCeEEEcCcchhhhcccccCccccCcEEEEEHHHh---hhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHH
Confidence 63 4444444432111 11233578999998854 2211 01111235799999999998631 111111
Q ss_pred HHHHHHHHHHhhccccccEEEEccccCC--hHH---------------HHHHHh-----------------ccc------
Q 000114 645 SIVARTVRQIETTKEHIRLVGLSATLPN--YED---------------VALFLR-----------------VNL------ 684 (2158)
Q Consensus 645 ~iv~r~~~~~~~~~~~~riv~lSATlpn--~~d---------------v~~~l~-----------------~~~------ 684 (2158)
..+..+. .....+++||||+-. .++ ...|.. ...
T Consensus 296 ~~v~~La------~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~ 369 (956)
T PRK04914 296 QVVEQLA------EVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDAL 369 (956)
T ss_pred HHHHHHh------hccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHH
Confidence 2222221 123468999999531 111 111110 000
Q ss_pred -----------------------------------------cCceEEecCCcccc---cce-eEEEeeccCChhHH----
Q 000114 685 -----------------------------------------EKGLFYFDNSYRPV---PLS-QQYIGIQVKKPLQR---- 715 (2158)
Q Consensus 685 -----------------------------------------~~~~~~f~~~~rpv---~l~-~~~~~~~~~~~~~~---- 715 (2158)
..+-+.|.....-+ |-. .+.+.+........
T Consensus 370 ~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~ 449 (956)
T PRK04914 370 NALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKV 449 (956)
T ss_pred HHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHH
Confidence 00001111100000 000 00011100000000
Q ss_pred ---------------HHHh------------hHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHH-hhccccccccc
Q 000114 716 ---------------FQLM------------NDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDT-ALENDTLGRFL 767 (2158)
Q Consensus 716 ---------------~~~l------------~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~-~~~~~~~~~~~ 767 (2158)
+..+ .+.+. .+++...+.++||||+++..+..++..|+.. |
T Consensus 450 ~~~~~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~-~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~G---------- 518 (956)
T PRK04914 450 SLEARARDMLYPEQIYQEFEDNATWWNFDPRVEWLI-DFLKSHRSEKVLVICAKAATALQLEQALREREG---------- 518 (956)
T ss_pred hHHHHHHhhcCHHHHHHHHhhhhhccccCHHHHHHH-HHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccC----------
Confidence 0000 00011 1222233679999999999999999988542 2
Q ss_pred ccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCC--CceEEEechhhhhccCCCceEEEEec
Q 000114 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG--HVQVLVSTATLAWGVNLPAHTVIIKG 845 (2158)
Q Consensus 768 ~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g--~i~VLVaT~tla~GVdlP~v~vVI~~ 845 (2158)
..+..+||+|+..+|..+.+.|+++ ..+|||||+++++|+|++.+++||++
T Consensus 519 ---------------------------i~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInf 571 (956)
T PRK04914 519 ---------------------------IRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLF 571 (956)
T ss_pred ---------------------------eeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEe
Confidence 2245679999999999999999984 69999999999999999999999996
Q ss_pred ccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEE
Q 000114 846 TQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2158)
Q Consensus 846 ~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2158)
+.|++| ..|.||+||+||.|.. |.+.++
T Consensus 572 DlP~nP----------~~~eQRIGR~~RiGQ~--~~V~i~ 599 (956)
T PRK04914 572 DLPFNP----------DLLEQRIGRLDRIGQK--HDIQIH 599 (956)
T ss_pred cCCCCH----------HHHHHHhcccccCCCC--ceEEEE
Confidence 666554 5799999999998854 444433
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-19 Score=231.05 Aligned_cols=127 Identities=17% Similarity=0.124 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.+.++|-..--. ++. . -|+.++||+|||++|.+|++..+..+ ..+++++|++.||.|.++.+..++
T Consensus 82 ~~ydvQliGg~~-Lh~-G-~Iaem~TGeGKTL~a~Lpa~~~al~G-----------~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 82 RHFDVQLIGGMV-LHE-G-NIAEMRTGEGKTLVATLPAYLNAISG-----------RGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred CcchHHHhhhhh-hcc-C-ccccccCCCCchHHHHHHHHHHHhcC-----------CCEEEEcCCHHHHHHHHHHHHHHh
Confidence 455666544333 332 2 58899999999999999999776543 258999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCHh-hhccccEEEcchhHH--HHHHhccCC---CccccccceEEeeccccc
Q 000114 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSGD---RTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPekl--d~l~r~~~~---~~~l~~v~lIIiDEaH~l 635 (2158)
..+|++|+.++|+.+...+ ....++|+++||+++ |.+..+... ......+.++||||||.+
T Consensus 148 ~~lGLtv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsi 214 (896)
T PRK13104 148 EFLGLTVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSI 214 (896)
T ss_pred cccCceEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhh
Confidence 9999999999999775543 334789999999995 766554221 112367899999999966
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.6e-19 Score=242.59 Aligned_cols=339 Identities=14% Similarity=0.144 Sum_probs=197.4
Q ss_pred CCCCHHHHHHHHHHh----cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1340 KHFNPIQTQVFTVLY----NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~----~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
..++++|.+|+..+. ++.+++++++|||||||.++...+.+.+.. ...+ ++|||+|+++|+.|..+.|+. ++
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~-~~~~--rVLfLvDR~~L~~Qa~~~F~~-~~ 487 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKA-KRFR--RILFLVDRSALGEQAEDAFKD-TK 487 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhc-CccC--eEEEEecHHHHHHHHHHHHHh-cc
Confidence 358999999998875 355679999999999999875544444433 3334 999999999999999999883 43
Q ss_pred CCCCcEEEEEcCCcch-hhhcccCCcEEEeCHHHHHHHHhhhh---ccccccceeEEEecccccccC------C---CCC
Q 000114 1416 QGLGMRVVELTGETAM-DLKLLEKGQIIISTPEKWDALSRRWK---QRKYVQQVSLFIIDELHLIGG------Q---GGP 1482 (2158)
Q Consensus 1416 ~~~g~~v~~ltG~~~~-~~~~l~~~~IIV~TPe~l~~l~r~~~---~~~~l~~v~llIiDEaH~l~~------~---~g~ 1482 (2158)
...+..+..+.+-... +...-..++|+|+|..++........ ....+..+++||+||||+-.. . ...
T Consensus 488 ~~~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~ 567 (1123)
T PRK11448 488 IEGDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFR 567 (1123)
T ss_pred cccccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccc
Confidence 2112121111111100 11112346999999998755432111 113467899999999998421 0 111
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCC----------CCc-ccccEEEE--ecccc
Q 000114 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPP----------GVR-PVPLEIHI--QGVDI 1549 (2158)
Q Consensus 1483 ~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~----------~~r-pv~l~~~i--~~~~~ 1549 (2158)
.....++..+.+.... +...||||||+.. ....++|.. ++.++- .+. |..+...+ .+...
T Consensus 568 ~~~~~~~~yr~iL~yF--dA~~IGLTATP~r--~t~~~FG~p---v~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~ 640 (1123)
T PRK11448 568 DQLDYVSKYRRVLDYF--DAVKIGLTATPAL--HTTEIFGEP---VYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHF 640 (1123)
T ss_pred hhhhHHHHHHHHHhhc--CccEEEEecCCcc--chhHHhCCe---eEEeeHHHHHhcCCcccCcCCEEEEEEeccccccc
Confidence 1222345555555433 3578999999852 334445531 211110 000 11111110 00000
Q ss_pred ------------------cchHH----HHHhcC---------hHHHHHHHHhHh--cCCCEEEEecChHHHHHHHHHHHh
Q 000114 1550 ------------------TNFEA----RMQAMT---------KPTFTAIVQHAK--NEKPALVFVPSRKYVRLTAVDLMT 1596 (2158)
Q Consensus 1550 ------------------~~~~~----~~~~~~---------k~~~~~i~~~~~--~~~~~IVFv~sr~~~~~~a~~L~~ 1596 (2158)
..... ....++ +.....+..++. ..+++||||.++++|+.++..|..
T Consensus 641 ~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~ 720 (1123)
T PRK11448 641 EKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKE 720 (1123)
T ss_pred cccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHH
Confidence 00000 000111 111222333322 236899999999999988877643
Q ss_pred hcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCc-eEEEecCccccccCC
Q 000114 1597 YSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKI-KVCVMSSSMCWGVPL 1675 (2158)
Q Consensus 1597 ~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i-~VLVaT~~la~Gvdl 1675 (2158)
..... ........+..+||+.+ ++..+++.|+++.. +|+|+++.+.+|+|+
T Consensus 721 ~f~~~--------------------------~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~Dv 772 (1123)
T PRK11448 721 AFKKK--------------------------YGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDV 772 (1123)
T ss_pred HHHhh--------------------------cCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCc
Confidence 21100 00001123556888875 56789999999987 799999999999999
Q ss_pred CccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCC-CceEEEEEecC
Q 000114 1676 TAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD-NSGKCVILCHA 1727 (2158)
Q Consensus 1676 p~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d-~~G~~iil~~~ 1727 (2158)
|.+..||. + ..+.|...|+||+||+.|...+ ++-.++|+-.-
T Consensus 773 P~v~~vVf----~------rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 773 PSICNLVF----L------RRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred ccccEEEE----e------cCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 98888872 2 2335899999999999997422 24445555433
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-19 Score=209.34 Aligned_cols=184 Identities=21% Similarity=0.283 Sum_probs=144.2
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
+|+.+++.+ .|++.|+++|.++++.++++ .|++++||||+|||++++++++..+..... ..+++++|++|+
T Consensus 6 ~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~li~~~TG~GKT~~~~~~~l~~~~~~~~------~~~~~viii~p~ 78 (203)
T cd00268 6 LSPELLRGIYALGFEKPTPIQARAIPPLLSG-RDVIGQAQTGSGKTAAFLIPILEKLDPSPK------KDGPQALILAPT 78 (203)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CcEEEECCCCCcHHHHHHHHHHHHHHhhcc------cCCceEEEEcCC
Confidence 344455444 58999999999999999885 679999999999999999999998876521 135689999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHh--hh-ccccEEEcchhHHHHHHhccCCCccccccceEEeecccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QI-EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~-~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
++|+.|+...+..+....++.+..++|+...... .. .+++|+|+||+++..+.++.. ..+.+++++|+||+|.+.
T Consensus 79 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~--~~~~~l~~lIvDE~h~~~ 156 (203)
T cd00268 79 RELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK--LDLSKVKYLVLDEADRML 156 (203)
T ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC--CChhhCCEEEEeChHHhh
Confidence 9999999999999877778999999998765432 22 378999999999855554443 567889999999999987
Q ss_pred c-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc
Q 000114 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2158)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~ 683 (2158)
+ .++..+..++.++ ..+.+++++|||++ .++..++...
T Consensus 157 ~~~~~~~~~~~~~~l-------~~~~~~~~~SAT~~--~~~~~~~~~~ 195 (203)
T cd00268 157 DMGFEDQIREILKLL-------PKDRQTLLFSATMP--KEVRDLARKF 195 (203)
T ss_pred ccChHHHHHHHHHhC-------CcccEEEEEeccCC--HHHHHHHHHH
Confidence 6 4566666655533 45899999999998 4556655543
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-18 Score=203.29 Aligned_cols=438 Identities=17% Similarity=0.195 Sum_probs=271.4
Q ss_pred HHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHH
Q 000114 1332 YEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDW 1410 (2158)
Q Consensus 1332 ~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~ 1410 (2158)
|-.+++ .-.-|---|+.-|-.++..+.-+++++.||||||...-...+...... .+ .+.+..|.|.-|.+++.+.
T Consensus 36 Y~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~--~~--~v~CTQprrvaamsva~RV 111 (699)
T KOG0925|consen 36 YYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH--LT--GVACTQPRRVAAMSVAQRV 111 (699)
T ss_pred HHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh--cc--ceeecCchHHHHHHHHHHH
Confidence 444444 223344457788888888888899999999999965433333333331 23 6889999999999999988
Q ss_pred HHHhcCCCCcEEEEEcCCcchhhhcc--cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHH
Q 000114 1411 EIKFGQGLGMRVVELTGETAMDLKLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2158)
Q Consensus 1411 ~~~f~~~~g~~v~~ltG~~~~~~~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~i 1488 (2158)
...+.-.+|-.|+... ..+.- .+.-+-++|.+. ++|.......+...+++|+||||. |.-.-..+.
T Consensus 112 adEMDv~lG~EVGysI-----rfEdC~~~~T~Lky~tDgm---LlrEams~p~l~~y~viiLDeahE----RtlATDiLm 179 (699)
T KOG0925|consen 112 ADEMDVTLGEEVGYSI-----RFEDCTSPNTLLKYCTDGM---LLREAMSDPLLGRYGVIILDEAHE----RTLATDILM 179 (699)
T ss_pred HHHhccccchhccccc-----cccccCChhHHHHHhcchH---HHHHHhhCcccccccEEEechhhh----hhHHHHHHH
Confidence 8766544444443211 11110 011123445444 445555567889999999999993 222334455
Q ss_pred HHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHH
Q 000114 1489 SRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIV 1568 (2158)
Q Consensus 1489 srl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~ 1568 (2158)
.-++.+.... ++.++|.+|||+ .+..+..|++..+ +...+. .. |+++.+......++ +.+..+..++ |.
T Consensus 180 Gllk~v~~~r-pdLk~vvmSatl-~a~Kfq~yf~n~P--ll~vpg-~~--PvEi~Yt~e~erDy---lEaairtV~q-ih 248 (699)
T KOG0925|consen 180 GLLKEVVRNR-PDLKLVVMSATL-DAEKFQRYFGNAP--LLAVPG-TH--PVEIFYTPEPERDY---LEAAIRTVLQ-IH 248 (699)
T ss_pred HHHHHHHhhC-CCceEEEeeccc-chHHHHHHhCCCC--eeecCC-CC--ceEEEecCCCChhH---HHHHHHHHHH-HH
Confidence 6666666554 599999999998 6778888887664 344333 33 44554433332222 2222222222 22
Q ss_pred HhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHH
Q 000114 1569 QHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQ 1648 (2158)
Q Consensus 1569 ~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR 1648 (2158)
.. ...+.++||.++.++.+..++.+..... ..........|..+| +.++
T Consensus 249 ~~-ee~GDilvFLtgeeeIe~aC~~i~re~~--------------------------~L~~~~g~l~v~PLy----P~~q 297 (699)
T KOG0925|consen 249 MC-EEPGDILVFLTGEEEIEDACRKISREVD--------------------------NLGPQVGPLKVVPLY----PAQQ 297 (699)
T ss_pred hc-cCCCCEEEEecCHHHHHHHHHHHHHHHH--------------------------hhccccCCceEEecC----chhh
Confidence 22 4567899999999998888876632111 011111223366666 3333
Q ss_pred HHHHHHHH---cC--CceEEEecCccccccCCCccEEEEe-c---ceeecCCCCc----CcCCCHHHHHHhhccCCCCCC
Q 000114 1649 EVVSALFE---AG--KIKVCVMSSSMCWGVPLTAHLVVVM-G---TQYYDGQENA----HTDYPVTDLLQMMGHASRPLL 1715 (2158)
Q Consensus 1649 ~~v~~~F~---~g--~i~VLVaT~~la~Gvdlp~~~vVI~-g---t~~yd~~~~~----~~~~s~~~~lQr~GRaGR~g~ 1715 (2158)
..+++... +| ..+|+|+|+.++..+.++++.+||. | .+.|+++... -.|+|..+..||.|||||.
T Consensus 298 q~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-- 375 (699)
T KOG0925|consen 298 QRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-- 375 (699)
T ss_pred ccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC--
Confidence 33333322 22 4589999999999999999999993 2 3568887432 4578899999999999994
Q ss_pred CCceEEEEEecCChHHHHHHHhh---CCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccC
Q 000114 1716 DNSGKCVILCHAPRKEYYKKFLY---DAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNL 1792 (2158)
Q Consensus 1716 d~~G~~iil~~~~~~~~~~k~l~---~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~ 1792 (2158)
..|+|+-++.+ .++++-+. -|+..+|+|..... +...-.|.+ ...+.|+ ..|.
T Consensus 376 -~pGkcfrLYte---~~~~~em~~~typeilrsNL~s~VL-----~LKklgI~d------lvhfdfm-----DpPA---- 431 (699)
T KOG0925|consen 376 -RPGKCFRLYTE---EAFEKEMQPQTYPEILRSNLSSTVL-----QLKKLGIDD------LVHFDFM-----DPPA---- 431 (699)
T ss_pred -CCCceEEeecH---HhhhhcCCCCCcHHHHHHhhHHHHH-----HHHhcCccc------ccCCcCC-----CCCC----
Confidence 79999999876 44554443 23345555533222 111111111 1111121 1121
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHhc
Q 000114 1793 QGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLAS 1870 (2158)
Q Consensus 1793 ~~~~~~~~~~~l~~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils~ 1870 (2158)
-|.+..|+++|.-.+|+ ++++++ |.+|.+||.|+++|.-++++..+-..++. .++|.|-|+
T Consensus 432 ------------PEtLMrALE~LnYLaaL--dDdGnL--T~lG~imSEFPLdPqLAkmLi~S~efnCs-nEiLsisAM 492 (699)
T KOG0925|consen 432 ------------PETLMRALEVLNYLAAL--DDDGNL--TSLGEIMSEFPLDPQLAKMLIGSCEFNCS-NEILSISAM 492 (699)
T ss_pred ------------hHHHHHHHHHhhhhhhh--CCCccc--chhhhhhhcCCCChHHHHHHhhcCCCCch-HHHHHHHhc
Confidence 26778899999988888 455545 55699999999999999999987766665 566665543
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=6e-18 Score=227.93 Aligned_cols=342 Identities=15% Similarity=0.166 Sum_probs=206.3
Q ss_pred CCCCHHHHHHHHHHhcC-CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1340 KHFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~-~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
..+.|+|..+...++.. ..++|++-..|-|||+-+.+.+-..+.. ...+ +++||||. .|+.|+..++.++|+
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-g~~~--rvLIVvP~-sL~~QW~~El~~kF~--- 223 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-GRAE--RVLILVPE-TLQHQWLVEMLRRFN--- 223 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-CCCC--cEEEEcCH-HHHHHHHHHHHHHhC---
Confidence 36999999998887642 3469999999999999996655544444 3334 89999997 899999999987885
Q ss_pred CcEEEEEcCCcchh-----hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC-CCChHHHHHHHHH
Q 000114 1419 GMRVVELTGETAMD-----LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMR 1492 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~-----~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~-~g~~~e~~isrl~ 1492 (2158)
+.+..+.++.... ...+...+++|+|.+.+..-. .+.....-..++++||||||++... ..+.- ....+.
T Consensus 224 -l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~-~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~--~y~~v~ 299 (956)
T PRK04914 224 -LRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNK-QRLEQALAAEWDLLVVDEAHHLVWSEEAPSR--EYQVVE 299 (956)
T ss_pred -CCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCH-HHHHHHhhcCCCEEEEechhhhccCCCCcCH--HHHHHH
Confidence 3444444432211 123345689999977543211 1111112246899999999999632 11111 122333
Q ss_pred HHHhhcCCCceEEEeccCCCC--hHHH---------------HHHhc-----------------cCC-C-----ce----
Q 000114 1493 YIASQVENKIRIVALSTSLAN--AKDL---------------GEWIG-----------------ATS-H-----GL---- 1528 (2158)
Q Consensus 1493 ~i~~~~~~~~riV~lSATl~n--~~dl---------------~~wl~-----------------~~~-~-----~i---- 1528 (2158)
.+.. ....+++||||+-. ..++ ..|.. ... . .+
T Consensus 300 ~La~---~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll 376 (956)
T PRK04914 300 QLAE---VIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELL 376 (956)
T ss_pred HHhh---ccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHh
Confidence 3332 23468999999853 2111 11110 000 0 00
Q ss_pred --------------------------------------EecCCC---Ccccc-cEEEEeccccc-chHHHH---------
Q 000114 1529 --------------------------------------FNFPPG---VRPVP-LEIHIQGVDIT-NFEARM--------- 1556 (2158)
Q Consensus 1529 --------------------------------------~~f~~~---~rpv~-l~~~i~~~~~~-~~~~~~--------- 1556 (2158)
+-|+.. ....| -..+......+ .+....
T Consensus 377 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~ 456 (956)
T PRK04914 377 GEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARAR 456 (956)
T ss_pred cccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHH
Confidence 000000 00000 00000001110 000000
Q ss_pred ---------Hh--------cChHHHHHHHHhH--hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccch
Q 000114 1557 ---------QA--------MTKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVE 1617 (2158)
Q Consensus 1557 ---------~~--------~~k~~~~~i~~~~--~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~ 1617 (2158)
.. -..+....+...+ ....++||||+++..+..++..|.
T Consensus 457 ~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~---------------------- 514 (956)
T PRK04914 457 DMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALR---------------------- 514 (956)
T ss_pred hhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHh----------------------
Confidence 00 0011122222222 236789999999999988886552
Q ss_pred hhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcC--CceEEEecCccccccCCCccEEEEecceeecCCCCcC
Q 000114 1618 PFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAG--KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAH 1695 (2158)
Q Consensus 1618 ~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g--~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~ 1695 (2158)
...+..+..+||+|+..+|..+.+.|+++ ..+|||||+++++|+|++.+.+|| +++
T Consensus 515 ------------~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VI----------nfD 572 (956)
T PRK04914 515 ------------EREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLV----------LFD 572 (956)
T ss_pred ------------hccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEE----------Eec
Confidence 22345678899999999999999999984 699999999999999999999998 778
Q ss_pred cCCCHHHHHHhhccCCCCCCCCceEEEEEecCC-hHHHHHHHhhC
Q 000114 1696 TDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP-RKEYYKKFLYD 1739 (2158)
Q Consensus 1696 ~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~-~~~~~~k~l~~ 1739 (2158)
.|.++..|.||+||+||.|..+...+++++... ..+.+..++.+
T Consensus 573 lP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 573 LPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred CCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 899999999999999999855444444444443 23444444444
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-18 Score=225.09 Aligned_cols=352 Identities=16% Similarity=0.196 Sum_probs=218.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.++++|--.--.+..| -|....||+|||+++.+|++.....+ ..+-+++|+--||.+-++.+...+
T Consensus 80 ~~~dvQlig~l~l~~G---~iaEm~TGEGKTLvA~l~a~l~al~G-----------~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 80 RPFDVQIIGGIVLHEG---NIAEMKTGEGKTLTATLPVYLNALTG-----------KGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred CCchhHHHHHHHHhcC---CcccccCCCCCcHHHHHHHHHHHHcC-----------CCeEEEeccHHHHHhhHHHHHHHH
Confidence 5677787665543332 38899999999999999998887654 368999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCH-hhhccccEEEcchhHH--HHHHhcc---CCCccccccceEEeecccccc-c-CChhh----
Q 000114 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLH-D-NRGPV---- 642 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~-~~~~~~~IiV~TPekl--d~l~r~~---~~~~~l~~v~lIIiDEaH~l~-d-~rg~~---- 642 (2158)
..+|++|+.++|+.+... +..-.++|+++|...+ |.|.-+. .+........+.||||||.++ | .|.|.
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg 225 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISG 225 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCC
Confidence 999999999999875543 3456899999999875 5554432 122234567899999999652 3 12211
Q ss_pred -------HHHHHHHHHHHHhhc----------------cccccEEEEccc----------cCC---hH--HHHHHHhccc
Q 000114 643 -------LESIVARTVRQIETT----------------KEHIRLVGLSAT----------LPN---YE--DVALFLRVNL 684 (2158)
Q Consensus 643 -------le~iv~r~~~~~~~~----------------~~~~riv~lSAT----------lpn---~~--dv~~~l~~~~ 684 (2158)
+-..+.++...+... ...-+.+.++.. ++| .+ .+..|+...+
T Consensus 226 ~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al 305 (796)
T PRK12906 226 QAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQAL 305 (796)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHH
Confidence 111222222211110 011222333321 111 01 1222221100
Q ss_pred ---------------cCceEEecC-Cccc-------------------ccc------------------ee---------
Q 000114 685 ---------------EKGLFYFDN-SYRP-------------------VPL------------------SQ--------- 702 (2158)
Q Consensus 685 ---------------~~~~~~f~~-~~rp-------------------v~l------------------~~--------- 702 (2158)
...+...+. .-|. +++ ..
T Consensus 306 ~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa 385 (796)
T PRK12906 306 RANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTA 385 (796)
T ss_pred HHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCC
Confidence 000011100 0000 000 00
Q ss_pred -------------EEEeeccCCh--------------hHHHHHhhHHHHHHHHH-HhCCCeEEEEecChHHHHHHHHHHH
Q 000114 703 -------------QYIGIQVKKP--------------LQRFQLMNDLCYEKVVA-VAGKHQVLIFVHSRKETAKTARAIR 754 (2158)
Q Consensus 703 -------------~~~~~~~~~~--------------~~~~~~l~~~~~~~i~~-~~~~~~vLVFv~sr~~~~~~a~~L~ 754 (2158)
.++.++..++ ..+.. .+.+.+.+ +..+.|+||||+|+..++.++..|.
T Consensus 386 ~~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~----al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~ 461 (796)
T PRK12906 386 KTEEEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFN----AVVKEIKERHAKGQPVLVGTVAIESSERLSHLLD 461 (796)
T ss_pred HHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHH----HHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHH
Confidence 0111111111 11111 12222322 3357899999999999999999998
Q ss_pred HHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhcc
Q 000114 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGV 834 (2158)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GV 834 (2158)
..++.. ..+||++...++..+...++.|. |+|||++++||.
T Consensus 462 ~~gi~~-------------------------------------~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGt 502 (796)
T PRK12906 462 EAGIPH-------------------------------------AVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGT 502 (796)
T ss_pred HCCCCe-------------------------------------eEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCC
Confidence 866433 35599999888888888888886 999999999999
Q ss_pred CCC---ceE-----EEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHH-------HHHHhh-
Q 000114 835 NLP---AHT-----VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR-------YYLSLM- 898 (2158)
Q Consensus 835 dlP---~v~-----vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~-------~y~~ll- 898 (2158)
|++ ++. +||+ ++.+. |...+.|+.|||||.| ..|.+..+++-++.- .+.+++
T Consensus 503 DI~l~~~V~~~GGLhVI~----te~pe------s~ri~~Ql~GRtGRqG--~~G~s~~~~sleD~l~~~f~~~~~~~~~~ 570 (796)
T PRK12906 503 DIKLGPGVKELGGLAVIG----TERHE------SRRIDNQLRGRSGRQG--DPGSSRFYLSLEDDLMRRFGSDRVKAFLD 570 (796)
T ss_pred CCCCCcchhhhCCcEEEe----eecCC------cHHHHHHHhhhhccCC--CCcceEEEEeccchHHHhhCcHHHHHHHH
Confidence 994 888 9998 55443 6678999999999988 679998888775411 122232
Q ss_pred -----cCCCcccchhhHhhHHH
Q 000114 899 -----NQQLPIESQFVSKLADQ 915 (2158)
Q Consensus 899 -----~~~~pieS~l~~~l~d~ 915 (2158)
....||++.+.....+.
T Consensus 571 ~~~~~~~~~~i~~~~~~~~i~~ 592 (796)
T PRK12906 571 RLGMNDDDQVIESRMITRQVES 592 (796)
T ss_pred HcCCCCCCCcccchHHHHHHHH
Confidence 34578888877665544
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.8e-19 Score=203.41 Aligned_cols=176 Identities=24% Similarity=0.367 Sum_probs=136.4
Q ss_pred ChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHH
Q 000114 1328 RNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2158)
Q Consensus 1328 ~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~ 1406 (2158)
+...++.+.. |+..|+++|.++++.+++ +.|++++||||+|||++|.++++..+......++++++|++|+++|+.|+
T Consensus 7 ~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~ 85 (203)
T cd00268 7 SPELLRGIYALGFEKPTPIQARAIPPLLS-GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQI 85 (203)
T ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHhc-CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHH
Confidence 3445555554 689999999999999998 56799999999999999999999998884212334999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEcCCcchh--hhccc-CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCCh
Q 000114 1407 YRDWEIKFGQGLGMRVVELTGETAMD--LKLLE-KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2158)
Q Consensus 1407 ~~~~~~~f~~~~g~~v~~ltG~~~~~--~~~l~-~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~ 1483 (2158)
.+.++. +....++++..++|+.... ...+. +++|+|+||+++..++.+.. ..+++++++|+||+|.+.+..
T Consensus 86 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~--~~~~~l~~lIvDE~h~~~~~~--- 159 (203)
T cd00268 86 AEVARK-LGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK--LDLSKVKYLVLDEADRMLDMG--- 159 (203)
T ss_pred HHHHHH-HhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC--CChhhCCEEEEeChHHhhccC---
Confidence 999984 5544578899999987653 23333 67999999999988877643 567899999999999987433
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEeccCCCC
Q 000114 1484 LEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1484 ~e~~isrl~~i~~~~~~~~riV~lSATl~n 1513 (2158)
+...+..+...++.+.+++++|||+++
T Consensus 160 ---~~~~~~~~~~~l~~~~~~~~~SAT~~~ 186 (203)
T cd00268 160 ---FEDQIREILKLLPKDRQTLLFSATMPK 186 (203)
T ss_pred ---hHHHHHHHHHhCCcccEEEEEeccCCH
Confidence 112222223334568999999999985
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=235.74 Aligned_cols=328 Identities=20% Similarity=0.242 Sum_probs=204.5
Q ss_pred CCCHHHHHHHHHHHcC--CC-cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSALSS--AD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~--~~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
...+.|..++..+... .. .+++.||||+|||.+++.+++........ ...+++|+.|++++++++++++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~-------~~~r~i~vlP~~t~ie~~~~r~~ 267 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIK-------LKSRVIYVLPFRTIIEDMYRRAK 267 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcccc-------ccceEEEEccHHHHHHHHHHHHH
Confidence 3488999999888754 23 68999999999999999999888765311 34589999999999999999999
Q ss_pred hhcccCCcEEEEEeCCCccCHhh-----------------hccccEEEcchhHHHH-HHhccCCCc-cccccceEEeecc
Q 000114 572 NRLQMYDVKVRELSGDQTLTRQQ-----------------IEETQIIVTTPEKWDI-ITRKSGDRT-YTQLVKLLIIDEI 632 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~-----------------~~~~~IiV~TPekld~-l~r~~~~~~-~l~~v~lIIiDEa 632 (2158)
..++..++....++|.....-.. ..-..++++||-.+-. ......... ..-..+++|+||+
T Consensus 268 ~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~ 347 (733)
T COG1203 268 EIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEV 347 (733)
T ss_pred hhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccH
Confidence 88775543333234432211100 0122355555554322 111111110 0012378999999
Q ss_pred cccccCC-hhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCc-eEEecCCcccccceeEEEeeccC
Q 000114 633 HLLHDNR-GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG-LFYFDNSYRPVPLSQQYIGIQVK 710 (2158)
Q Consensus 633 H~l~d~r-g~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~-~~~f~~~~rpv~l~~~~~~~~~~ 710 (2158)
|.+.++. -..+..++..+ ...+.++|++|||+|. .+.+.+......+ ....... .++..... .+...
T Consensus 348 h~~~~~~~~~~l~~~i~~l------~~~g~~ill~SATlP~--~~~~~l~~~~~~~~~~~~~~~--~~~~~~e~-~~~~~ 416 (733)
T COG1203 348 HLYADETMLAALLALLEAL------AEAGVPVLLMSATLPP--FLKEKLKKALGKGREVVENAK--FCPKEDEP-GLKRK 416 (733)
T ss_pred HhhcccchHHHHHHHHHHH------HhCCCCEEEEecCCCH--HHHHHHHHHHhcccceecccc--cccccccc-ccccc
Confidence 9997763 23333333222 2347899999999994 4444444322221 1111111 11111000 00000
Q ss_pred ChhHHHHHhhHHHHHHHH-HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchh
Q 000114 711 KPLQRFQLMNDLCYEKVV-AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (2158)
Q Consensus 711 ~~~~~~~~l~~~~~~~i~-~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 789 (2158)
................+. +...+++++|.|||++.|.+++..|++.+.
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~------------------------------- 465 (733)
T COG1203 417 ERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP------------------------------- 465 (733)
T ss_pred cchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC-------------------------------
Confidence 000000000001111122 223378999999999999999999987642
Q ss_pred hhhccCCeEEecCCCCHHHHHHHHHHHh----CCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHH
Q 000114 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFG----DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIM 865 (2158)
Q Consensus 790 ~~ll~~gv~~hHagl~~~~R~~v~~~F~----~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~ 865 (2158)
.+..+||.++..+|...++.+. .+...|+|||++.+.|||+. .+++|- ++. ++..++
T Consensus 466 ------~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT-----e~a-------PidSLI 526 (733)
T COG1203 466 ------KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT-----ELA-------PIDSLI 526 (733)
T ss_pred ------CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee-----cCC-------CHHHHH
Confidence 2567799999999998888554 57889999999999999995 777773 322 567899
Q ss_pred HhhcccCCCCCCCccEEEEEcCCCc
Q 000114 866 QMLGRAGRPQYDSYGEGIIITGHSE 890 (2158)
Q Consensus 866 Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (2158)
||+||++|-|....|.+++......
T Consensus 527 QR~GRv~R~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 527 QRAGRVNRHGKKENGKIYVYNDEER 551 (733)
T ss_pred HHHHHHhhcccccCCceeEeecccC
Confidence 9999999988666788888766543
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.6e-18 Score=220.65 Aligned_cols=128 Identities=18% Similarity=0.160 Sum_probs=94.6
Q ss_pred CCHHHHHHHHHH-hcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1342 FNPIQTQVFTVL-YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1342 ~~~iQ~q~~~~l-~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
++|+-.|.+-.+ ++.+ -|..++||+|||++|.+|++..... +. .+.+++|++.||.|.++.+. .+...+|+
T Consensus 81 ~~~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~---G~--~V~VvTpn~yLA~qd~e~m~-~l~~~lGL 152 (896)
T PRK13104 81 LRHFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAIS---GR--GVHIVTVNDYLAKRDSQWMK-PIYEFLGL 152 (896)
T ss_pred CCcchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhc---CC--CEEEEcCCHHHHHHHHHHHH-HHhcccCc
Confidence 344444444443 2323 4889999999999999999976654 33 68999999999999999888 56666799
Q ss_pred EEEEEcCCcchhhh-cccCCcEEEeCHHHH-HHHHhhhhcc----ccccceeEEEeccccccc
Q 000114 1421 RVVELTGETAMDLK-LLEKGQIIISTPEKW-DALSRRWKQR----KYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~~-~l~~~~IIV~TPe~l-~~l~r~~~~~----~~l~~v~llIiDEaH~l~ 1477 (2158)
+|+.++|+.+...+ ....++|+++||+++ .++++..... ...+.+.++||||||.++
T Consensus 153 tv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 153 TVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred eEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 99999998765533 334679999999998 6666653111 123689999999999664
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.6e-19 Score=197.14 Aligned_cols=158 Identities=30% Similarity=0.477 Sum_probs=126.6
Q ss_pred CHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhccc
Q 000114 497 NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM 576 (2158)
Q Consensus 497 ~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~ 576 (2158)
||+|.++++.++ ++++++++||||+|||+++++++++.+.... ..+++|++|+++|+.|+++.+...+..
T Consensus 1 t~~Q~~~~~~i~-~~~~~li~aptGsGKT~~~~~~~l~~~~~~~---------~~~~lii~P~~~l~~q~~~~~~~~~~~ 70 (169)
T PF00270_consen 1 TPLQQEAIEAII-SGKNVLISAPTGSGKTLAYILPALNRLQEGK---------DARVLIIVPTRALAEQQFERLRKFFSN 70 (169)
T ss_dssp -HHHHHHHHHHH-TTSEEEEECSTTSSHHHHHHHHHHHHHHTTS---------SSEEEEEESSHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHH-cCCCEEEECCCCCccHHHHHHHHHhhhccCC---------CceEEEEeecccccccccccccccccc
Confidence 689999999998 4567999999999999999999999887641 238999999999999999999999888
Q ss_pred CCcEEEEEeCCCccCHhh---h-ccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CChhhHHHHHHHHH
Q 000114 577 YDVKVRELSGDQTLTRQQ---I-EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTV 651 (2158)
Q Consensus 577 ~gi~v~~l~Gd~~~~~~~---~-~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~iv~r~~ 651 (2158)
.++++..++|+....... . .+++|+|+||+++..+.+.... .+.++++|||||+|.+.+ .++..+..++.++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~--~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~- 147 (169)
T PF00270_consen 71 TNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI--NISRLSLIVIDEAHHLSDETFRAMLKSILRRL- 147 (169)
T ss_dssp TTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS--TGTTESEEEEETHHHHHHTTHHHHHHHHHHHS-
T ss_pred cccccccccccccccccccccccccccccccCcchhhcccccccc--ccccceeeccCcccccccccHHHHHHHHHHHh-
Confidence 788999999988754221 2 4699999999998555555322 445599999999999987 5666666655543
Q ss_pred HHHhhccccccEEEEccccC
Q 000114 652 RQIETTKEHIRLVGLSATLP 671 (2158)
Q Consensus 652 ~~~~~~~~~~riv~lSATlp 671 (2158)
. ...+.+++++|||++
T Consensus 148 ---~-~~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 148 ---K-RFKNIQIILLSATLP 163 (169)
T ss_dssp ---H-TTTTSEEEEEESSST
T ss_pred ---c-CCCCCcEEEEeeCCC
Confidence 1 123689999999987
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-17 Score=217.15 Aligned_cols=126 Identities=17% Similarity=0.130 Sum_probs=97.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHH-HHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhh
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTIL-QQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il-~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~ 573 (2158)
.++++|--.--. ++.+ -|..++||+|||++|.+|++ +.+ .+ ..+-+++|+..||.|.++.+..+
T Consensus 81 ~~~dvQlig~l~-L~~G--~Iaem~TGeGKTLva~lpa~l~aL-~G-----------~~V~IvTpn~yLA~rd~e~~~~l 145 (830)
T PRK12904 81 RHFDVQLIGGMV-LHEG--KIAEMKTGEGKTLVATLPAYLNAL-TG-----------KGVHVVTVNDYLAKRDAEWMGPL 145 (830)
T ss_pred CCCccHHHhhHH-hcCC--chhhhhcCCCcHHHHHHHHHHHHH-cC-----------CCEEEEecCHHHHHHHHHHHHHH
Confidence 566777665543 3332 48899999999999999996 444 22 14779999999999999999999
Q ss_pred cccCCcEEEEEeCCCccCHhh-hccccEEEcchhHH--HHHHhccC---CCccccccceEEeeccccc
Q 000114 574 LQMYDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~-~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~lIIiDEaH~l 635 (2158)
+..+|++|+.++|+.+...+. .-.++|+++||..+ |.+..+.. .....+.+.++||||||.+
T Consensus 146 ~~~LGlsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsi 213 (830)
T PRK12904 146 YEFLGLSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSI 213 (830)
T ss_pred HhhcCCeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhh
Confidence 999999999999987765433 34689999999997 66644431 1134567899999999965
|
|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.1e-18 Score=230.12 Aligned_cols=327 Identities=20% Similarity=0.219 Sum_probs=207.6
Q ss_pred CCHHHHHHHHHHhcC--CC-cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1342 FNPIQTQVFTVLYNT--DD-NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1342 ~~~iQ~q~~~~l~~~--~~-nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
..+.|..++..+... .. .+++.||||+|||.+++.+++..+... .....+++|+.|+++++.+++++++..++..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~- 273 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-IKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF- 273 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-ccccceEEEEccHHHHHHHHHHHHHhhhccc-
Confidence 388999999887652 23 789999999999999988888776662 1123399999999999999999999766543
Q ss_pred CcEEEE-EcCCcchhhh-----------------cccCCcEEEeCHHHHHHHHhhhhccccc--cceeEEEecccccccC
Q 000114 1419 GMRVVE-LTGETAMDLK-----------------LLEKGQIIISTPEKWDALSRRWKQRKYV--QQVSLFIIDELHLIGG 1478 (2158)
Q Consensus 1419 g~~v~~-ltG~~~~~~~-----------------~l~~~~IIV~TPe~l~~l~r~~~~~~~l--~~v~llIiDEaH~l~~ 1478 (2158)
+ .... ++|....... ...-..++++||-++....-.......+ -..+++|+||+|.+.+
T Consensus 274 ~-~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~ 352 (733)
T COG1203 274 S-VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYAD 352 (733)
T ss_pred c-cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcc
Confidence 1 1222 3443222100 0011256777777665522111111111 2357899999999976
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh--HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHH
Q 000114 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM 1556 (2158)
Q Consensus 1479 ~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~--~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~ 1556 (2158)
+. .+..+..-+..+. ..+.++|++|||+|.. +.+...++.......+.. .-+..-+..+............
T Consensus 353 ~~--~~~~l~~~i~~l~---~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~--~~~~~~e~~~~~~~~~~~~~~~ 425 (733)
T COG1203 353 ET--MLAALLALLEALA---EAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAK--FCPKEDEPGLKRKERVDVEDGP 425 (733)
T ss_pred cc--hHHHHHHHHHHHH---hCCCCEEEEecCCCHHHHHHHHHHHhcccceecccc--ccccccccccccccchhhhhhh
Confidence 63 2333333333222 3488999999999974 344444444332111100 0000000000000000000000
Q ss_pred HhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccE
Q 000114 1557 QAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (2158)
Q Consensus 1557 ~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv 1636 (2158)
. ......+......+++++|.|||...|..++..|... .. .+
T Consensus 426 ~---~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~----------------------------------~~-~v 467 (733)
T COG1203 426 Q---EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEK----------------------------------GP-KV 467 (733)
T ss_pred h---HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhc----------------------------------CC-CE
Confidence 0 0122233344477899999999999999999766321 11 48
Q ss_pred EEecCCCCHHHHHHHHHHHH----cCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCC
Q 000114 1637 GYLHEGLNKTDQEVVSALFE----AGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2158)
Q Consensus 1637 ~~~H~~l~~~dR~~v~~~F~----~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR 1712 (2158)
..+||.+...+|...++.+. .+...|+|||++++.|||+....+|- ...|+.+++||+||++|
T Consensus 468 ~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDidfd~mIT-------------e~aPidSLIQR~GRv~R 534 (733)
T COG1203 468 LLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDIDFDVLIT-------------ELAPIDSLIQRAGRVNR 534 (733)
T ss_pred EEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccccCeeee-------------cCCCHHHHHHHHHHHhh
Confidence 99999999999998888654 57889999999999999999665553 34589999999999999
Q ss_pred CCCCCceEEEEEecCCh
Q 000114 1713 PLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1713 ~g~d~~G~~iil~~~~~ 1729 (2158)
.|.+..|.++++.....
T Consensus 535 ~g~~~~~~~~v~~~~~~ 551 (733)
T COG1203 535 HGKKENGKIYVYNDEER 551 (733)
T ss_pred cccccCCceeEeecccC
Confidence 98667888888877654
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-18 Score=192.62 Aligned_cols=158 Identities=30% Similarity=0.513 Sum_probs=123.5
Q ss_pred CHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEE
Q 000114 1343 NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRV 1422 (2158)
Q Consensus 1343 ~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v 1422 (2158)
||+|.++++.++. ++++++.||||+|||+++.++++..+.+. ..+ +++|++|+++|+.|+++.+.+.+.. .+.++
T Consensus 1 t~~Q~~~~~~i~~-~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~--~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~ 75 (169)
T PF00270_consen 1 TPLQQEAIEAIIS-GKNVLISAPTGSGKTLAYILPALNRLQEG-KDA--RVLIIVPTRALAEQQFERLRKFFSN-TNVRV 75 (169)
T ss_dssp -HHHHHHHHHHHT-TSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSS--EEEEEESSHHHHHHHHHHHHHHTTT-TTSSE
T ss_pred CHHHHHHHHHHHc-CCCEEEECCCCCccHHHHHHHHHhhhccC-CCc--eEEEEeecccccccccccccccccc-ccccc
Confidence 6899999999994 67799999999999999999999988874 334 9999999999999999999966554 57789
Q ss_pred EEEcCCcchh---hhcc-cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC-CCChHHHHHHHHHHHHhh
Q 000114 1423 VELTGETAMD---LKLL-EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQ 1497 (2158)
Q Consensus 1423 ~~ltG~~~~~---~~~l-~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~-~g~~~e~~isrl~~i~~~ 1497 (2158)
..++|+.... ...+ ..++|+|+||+++..+.+.+.. .+.+++++|+||+|.+..+ .+..+..++.++. .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~--~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~----~ 149 (169)
T PF00270_consen 76 VLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI--NISRLSLIVIDEAHHLSDETFRAMLKSILRRLK----R 149 (169)
T ss_dssp EEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS--TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSH----T
T ss_pred ccccccccccccccccccccccccccCcchhhcccccccc--ccccceeeccCcccccccccHHHHHHHHHHHhc----C
Confidence 9999987643 2233 4689999999999988887433 4566999999999999764 2333333333221 1
Q ss_pred cCCCceEEEeccCCC
Q 000114 1498 VENKIRIVALSTSLA 1512 (2158)
Q Consensus 1498 ~~~~~riV~lSATl~ 1512 (2158)
..+.+++++|||++
T Consensus 150 -~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 150 -FKNIQIILLSATLP 163 (169)
T ss_dssp -TTTSEEEEEESSST
T ss_pred -CCCCcEEEEeeCCC
Confidence 22689999999997
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-18 Score=198.62 Aligned_cols=280 Identities=14% Similarity=0.144 Sum_probs=221.6
Q ss_pred ccChhhHHHHHhhcCCCCCHHHHHHHHhcCccccCCCCCcchHHHHHHHhhcCccccCCCCCCChHHHHHHHHHHHhcCC
Q 000114 1842 YISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQ 1921 (2158)
Q Consensus 1842 ~I~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~~~K~~lLLqAhlsR~ 1921 (2158)
.|++.||.+|+..+....++..+|.++|+|.||..+ .| ..|..-.--|||.|+.|.
T Consensus 226 gvh~vT~~~f~~~~~~SlTlDelLslfasskElt~~----------------~p--------k~pk~~~ekll~dhlnr~ 281 (610)
T COG5407 226 GVHFVTMEMFYERIDGSLTLDELLSLFASSKELTRM----------------NP--------KGPKCTLEKLLGDHLNRA 281 (610)
T ss_pred ceeeeeHHHHHHhhcccchHHHHHHHHhhhHHHHHh----------------CC--------CCCchhHHHHHHHHHhHh
Confidence 477889999999999888999999999999998654 11 112223445899999997
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCC-CCccccCCCCCHHHHHHHHhCCCCC
Q 000114 1922 QVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWER-DSMLLQLPHFMKDLAKRCQENPGKS 2000 (2158)
Q Consensus 1922 ~lp~~l~~D~~~Il~~~~rLl~a~vdi~~~~g~l~~~l~~m~L~q~i~Q~~w~~-~s~L~QLP~~~~~~~~~l~~~~~~~ 2000 (2158)
.-. .+. ..+|+.++.-|++|+++|++..+++.++.+++.+.|||+||+.-+ .-+++||||.+.+.++.+.-..
T Consensus 282 ~s~-~fn--~~ri~s~~~~ll~aLL~ia~~F~f~~~~~g~~n~~q~iVqAiPld~~f~ilQlp~~d~E~~~~~s~r~--- 355 (610)
T COG5407 282 RSV-EFN--EYRIKSNVEGLLGALLRIASNFAFPLKECGKENKGQYIVQAIPLDHLFRILQLPRSDVEYAQRVSLRL--- 355 (610)
T ss_pred hcc-cch--heehhhhhHHHHHHHHHHHhhccCCchhhccchhhheeeEeccCCCCchhhcccchhHHHHHHhhhhh---
Confidence 533 222 678999999999999999999999999999999999999999876 5689999999999998877666
Q ss_pred ccCHHHHhcCCHHHHHHHhC-CChHHHHHHHHHHccCCceEE---EEEEeccccccCCCeEEEEEEEEE--cC-------
Q 000114 2001 IETVFDLVEMEDDERRELLQ-MSDVQLLDIARFCNRFPNIDM---SFEVQDSENVRAGEDITLQVVLER--DL------- 2067 (2158)
Q Consensus 2001 i~tv~dl~~~~~~~r~~ll~-~~~~~~~~v~~~~~~~P~i~v---~~~v~~~~~v~~g~~~~l~v~l~r--~~------- 2067 (2158)
|+++.++..+.+++....|+ +...++.++.++++++|++.+ .|=|.++..|++++.-.+.++..- ..
T Consensus 356 I~~~~~~~sL~~~~~g~vl~n~~~~~l~e~~~va~gIPr~~~~~a~flv~~d~~it~~s~~~vslk~~~g~~~~pe~~ts 435 (610)
T COG5407 356 IEGMKAIGSLIAKRYGNVLKNLVVLELMEIQAVADGIPRYFLLQAPFLVFEDLFITEKSKERVSLKGYLGAIPGPEHRTS 435 (610)
T ss_pred hhhhhhHhhHHHHHHhhhhhhHHHHHHHHHHHHhcCCCceEEEecceeecccceecccceeeEEEEEEeccccCCccccc
Confidence 99999999999999998887 788899999999999999987 566778888999987655544421 00
Q ss_pred --------C----------------CCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeecc----cceEEEEEE
Q 000114 2068 --------E----------------GRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQ----RKSRVKLDF 2119 (2158)
Q Consensus 2068 --------~----------------~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~~----~~~~~~l~f 2119 (2158)
+ +.++.+...||+||......||+.+.+++.+.++- ...++. .....+++|
T Consensus 436 ~~~~~n~~e~~dfe~~~~~~~ai~~d~~~~pys~Ap~f~t~~~~~w~~~v~~~~Qt~~Ii-p~~Si~~v~K~~~d~Ri~~ 514 (610)
T COG5407 436 ALNVYNQVEISDFEASVIETGAIKNDSSDSPYSEAPDFATRNDSEWAVRVAKCEQTVYII-PGGSIATVSKVTLDRRIQG 514 (610)
T ss_pred ccccccccChHHHhhhccCccccccCCCCCCcccCcccccccCcceEEEeeccccceEEe-CCccccccchhhhhccccc
Confidence 0 01234568899999999999999999998776543 333322 234567777
Q ss_pred EecCCCCceEEEEEEEeCCccccCcEEEEEEEe
Q 000114 2120 AAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVDV 2152 (2158)
Q Consensus 2120 ~~P~~~G~~~~~l~~~sDsY~G~D~~~~~~l~V 2152 (2158)
.+|+-.|+..+.+.+++-+|+|.+.---+.+-+
T Consensus 515 dv~pvd~T~~~ql~~~ap~~vg~f~~~~ivm~t 547 (610)
T COG5407 515 DVAPVDKTGGKQLIVHAPFMVGAFSVKWIVMLT 547 (610)
T ss_pred ccCccccccceeeeecCchhhccceeeeEEEEe
Confidence 777667888888999999999988776665443
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-16 Score=207.25 Aligned_cols=132 Identities=17% Similarity=0.199 Sum_probs=108.8
Q ss_pred CCCCC---CHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000114 492 GMTQL---NRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (2158)
Q Consensus 492 g~~~l---~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~ 568 (2158)
||..| +|+|.++++.++.+.+ +++.|+||+|||++|.+|++..+..+. .+++|+|++.||.|..+
T Consensus 86 G~~~p~~~tp~qvQ~I~~i~l~~g-vIAeaqTGeGKTLAf~LP~l~~aL~g~-----------~v~IVTpTrELA~Qdae 153 (970)
T PRK12899 86 GYHQQWDMVPYDVQILGAIAMHKG-FITEMQTGEGKTLTAVMPLYLNALTGK-----------PVHLVTVNDYLAQRDCE 153 (970)
T ss_pred cccCCCCCChHHHHHhhhhhcCCC-eEEEeCCCCChHHHHHHHHHHHHhhcC-----------CeEEEeCCHHHHHHHHH
Confidence 67766 9999999999888765 999999999999999999998775421 37899999999999999
Q ss_pred HHHhhcccCCcEEEEEeCCCccCHhh-hccccEEEcchhHH--HHHHhccCCCc----cccccceEEeeccccc
Q 000114 569 NLSNRLQMYDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKW--DIITRKSGDRT----YTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 569 ~~~~~~~~~gi~v~~l~Gd~~~~~~~-~~~~~IiV~TPekl--d~l~r~~~~~~----~l~~v~lIIiDEaH~l 635 (2158)
.+..+.+.+|++|+.+.|+.+...+. ...++|+|+||+++ |.+..+..... ....+.++||||||.+
T Consensus 154 ~m~~L~k~lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsm 227 (970)
T PRK12899 154 WVGSVLRWLGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSI 227 (970)
T ss_pred HHHHHHhhcCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhh
Confidence 99999988999999999998876643 34689999999998 66655532211 2245689999999976
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-17 Score=214.45 Aligned_cols=348 Identities=17% Similarity=0.135 Sum_probs=212.3
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.++++|--.--.+ +.+. |....||+|||+++.+|++-.... +. .+-+++|+.-||.+-++.+...|. .+|+
T Consensus 80 ~~~dvQlig~l~l-~~G~--iaEm~TGEGKTLvA~l~a~l~al~---G~--~v~vvT~neyLA~Rd~e~~~~~~~-~LGl 150 (796)
T PRK12906 80 RPFDVQIIGGIVL-HEGN--IAEMKTGEGKTLTATLPVYLNALT---GK--GVHVVTVNEYLSSRDATEMGELYR-WLGL 150 (796)
T ss_pred CCchhHHHHHHHH-hcCC--cccccCCCCCcHHHHHHHHHHHHc---CC--CeEEEeccHHHHHhhHHHHHHHHH-hcCC
Confidence 4556665554444 3233 889999999999999999877766 44 688999999999999999886554 4699
Q ss_pred EEEEEcCCcchh-hhcccCCcEEEeCHHHHH-HHHhhh----hccccccceeEEEeccccccc-CC-C------CC--hH
Q 000114 1421 RVVELTGETAMD-LKLLEKGQIIISTPEKWD-ALSRRW----KQRKYVQQVSLFIIDELHLIG-GQ-G------GP--VL 1484 (2158)
Q Consensus 1421 ~v~~ltG~~~~~-~~~l~~~~IIV~TPe~l~-~l~r~~----~~~~~l~~v~llIiDEaH~l~-~~-~------g~--~~ 1484 (2158)
+|+.++|+.+.. .+..-.++|+++|...+- +.+|-. ......+.+.+.||||+|.++ ++ + |+ ..
T Consensus 151 ~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~ 230 (796)
T PRK12906 151 TVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKA 230 (796)
T ss_pred eEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCCcc
Confidence 999999987654 445567899999998763 233321 112234567899999999553 11 1 11 11
Q ss_pred HHHHHHHHHHHhhcCC-------------------CceEEEecc----------CCCC---hH--HHHHHhcc-------
Q 000114 1485 EVIVSRMRYIASQVEN-------------------KIRIVALST----------SLAN---AK--DLGEWIGA------- 1523 (2158)
Q Consensus 1485 e~~isrl~~i~~~~~~-------------------~~riV~lSA----------Tl~n---~~--dl~~wl~~------- 1523 (2158)
..++..+..+..++.. ..+.|.++. .++| .. .+..|+..
T Consensus 231 ~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l 310 (796)
T PRK12906 231 TDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYI 310 (796)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHH
Confidence 1222222222221111 122222221 0111 11 12222210
Q ss_pred ---CCC------ce------------------------------------------------------------------
Q 000114 1524 ---TSH------GL------------------------------------------------------------------ 1528 (2158)
Q Consensus 1524 ---~~~------~i------------------------------------------------------------------ 1528 (2158)
... .+
T Consensus 311 ~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~ 390 (796)
T PRK12906 311 MLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEE 390 (796)
T ss_pred HhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHH
Confidence 000 00
Q ss_pred ---------EecCCCCcccccEEEEecccccc--hHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhh
Q 000114 1529 ---------FNFPPGVRPVPLEIHIQGVDITN--FEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTY 1597 (2158)
Q Consensus 1529 ---------~~f~~~~rpv~l~~~i~~~~~~~--~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~ 1597 (2158)
+..-|..+|... .+.+. +... ..-.+.....+......+.|+||||+|+..++.++..|..
T Consensus 391 Ef~~iY~l~vv~IPtnkp~~r------~d~~d~i~~t~-~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~- 462 (796)
T PRK12906 391 EFREIYNMEVITIPTNRPVIR------KDSPDLLYPTL-DSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDE- 462 (796)
T ss_pred HHHHHhCCCEEEcCCCCCeee------eeCCCeEEcCH-HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHH-
Confidence 000111111100 00000 0000 0001122233333335789999999999999999876632
Q ss_pred cccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCC-
Q 000114 1598 SSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLT- 1676 (2158)
Q Consensus 1598 ~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp- 1676 (2158)
.+.....+||++...++..+.+.++.|. |+|||++++||.|++
T Consensus 463 ----------------------------------~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l 506 (796)
T PRK12906 463 ----------------------------------AGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKL 506 (796)
T ss_pred ----------------------------------CCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCC
Confidence 2344678999999989899888888877 999999999999995
Q ss_pred --ccE-----EEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH-------HHHHHh-----
Q 000114 1677 --AHL-----VVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE-------YYKKFL----- 1737 (2158)
Q Consensus 1677 --~~~-----vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~-------~~~k~l----- 1737 (2158)
.+. +|| +...|-+...+.|+.|||||.| .+|.+..+++-.+.- .+.+++
T Consensus 507 ~~~V~~~GGLhVI----------~te~pes~ri~~Ql~GRtGRqG--~~G~s~~~~sleD~l~~~f~~~~~~~~~~~~~~ 574 (796)
T PRK12906 507 GPGVKELGGLAVI----------GTERHESRRIDNQLRGRSGRQG--DPGSSRFYLSLEDDLMRRFGSDRVKAFLDRLGM 574 (796)
T ss_pred CcchhhhCCcEEE----------eeecCCcHHHHHHHhhhhccCC--CCcceEEEEeccchHHHhhCcHHHHHHHHHcCC
Confidence 666 888 5567788999999999999998 788888777766421 123333
Q ss_pred -hCCCccccchhhHHHH
Q 000114 1738 -YDAFPVESHLHHFLHD 1753 (2158)
Q Consensus 1738 -~~~~piES~L~~~l~d 1753 (2158)
.+..|+++.+.....+
T Consensus 575 ~~~~~~i~~~~~~~~i~ 591 (796)
T PRK12906 575 NDDDQVIESRMITRQVE 591 (796)
T ss_pred CCCCCcccchHHHHHHH
Confidence 3467888887544443
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-17 Score=215.02 Aligned_cols=128 Identities=17% Similarity=0.102 Sum_probs=93.8
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.++++|--.--.+ +.+ -|..++||+|||++|.+|++-.... +. .+-+++|+..||.|.++.+. .+.+.+|+
T Consensus 81 ~~~dvQlig~l~L-~~G--~Iaem~TGeGKTLva~lpa~l~aL~---G~--~V~IvTpn~yLA~rd~e~~~-~l~~~LGl 151 (830)
T PRK12904 81 RHFDVQLIGGMVL-HEG--KIAEMKTGEGKTLVATLPAYLNALT---GK--GVHVVTVNDYLAKRDAEWMG-PLYEFLGL 151 (830)
T ss_pred CCCccHHHhhHHh-cCC--chhhhhcCCCcHHHHHHHHHHHHHc---CC--CEEEEecCHHHHHHHHHHHH-HHHhhcCC
Confidence 4555555444333 333 4889999999999999999633333 23 46699999999999999888 45556799
Q ss_pred EEEEEcCCcchhh-hcccCCcEEEeCHHHH-HHHHhhhhc----cccccceeEEEeccccccc
Q 000114 1421 RVVELTGETAMDL-KLLEKGQIIISTPEKW-DALSRRWKQ----RKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~-~~l~~~~IIV~TPe~l-~~l~r~~~~----~~~l~~v~llIiDEaH~l~ 1477 (2158)
+|+.++|+.+... +....++|+++||..+ .+++|.... ....+.+.++||||||.++
T Consensus 152 sv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 152 SVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred eEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 9999999877653 2334589999999999 667765321 1246778999999999654
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-16 Score=203.39 Aligned_cols=144 Identities=15% Similarity=0.172 Sum_probs=112.1
Q ss_pred cChhHHHHHh------cCCCCC---CHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEc
Q 000114 1327 LRNPLYEALY------QGFKHF---NPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (2158)
Q Consensus 1327 L~~~~~~~l~------~gf~~~---~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~Ia 1397 (2158)
+..+....+. .||..| +|+|.|+++.+..+.+ +++.|+||+|||++|.+|++..+.. +. .+++|+
T Consensus 69 l~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~g-vIAeaqTGeGKTLAf~LP~l~~aL~---g~--~v~IVT 142 (970)
T PRK12899 69 VVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKG-FITEMQTGEGKTLTAVMPLYLNALT---GK--PVHLVT 142 (970)
T ss_pred CCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCC-eEEEeCCCCChHHHHHHHHHHHHhh---cC--CeEEEe
Confidence 4444455554 268877 9999999999988655 9999999999999999999977755 23 478999
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh-cccCCcEEEeCHHHH-HHHHhhhhccc-----cccceeEEEe
Q 000114 1398 PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK-LLEKGQIIISTPEKW-DALSRRWKQRK-----YVQQVSLFII 1470 (2158)
Q Consensus 1398 P~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~-~l~~~~IIV~TPe~l-~~l~r~~~~~~-----~l~~v~llIi 1470 (2158)
|+++||.|.++.+. .+.+.+|++++.+.|+.+...+ ....++|+|+||+++ .++++...... ..+.+.++||
T Consensus 143 pTrELA~Qdae~m~-~L~k~lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~II 221 (970)
T PRK12899 143 VNDYLAQRDCEWVG-SVLRWLGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAII 221 (970)
T ss_pred CCHHHHHHHHHHHH-HHHhhcCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEE
Confidence 99999999999887 5666779999999998876533 223689999999999 77777531111 1235689999
Q ss_pred ccccccc
Q 000114 1471 DELHLIG 1477 (2158)
Q Consensus 1471 DEaH~l~ 1477 (2158)
||||.++
T Consensus 222 DEADsmL 228 (970)
T PRK12899 222 DEVDSIL 228 (970)
T ss_pred echhhhh
Confidence 9999664
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=208.43 Aligned_cols=128 Identities=16% Similarity=0.106 Sum_probs=97.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.++++|--.--. ++. .-|..++||.|||++|.+|++.....+ ..|.+|+|+..||.+..+.+..++
T Consensus 82 ~~ydVQliGgl~-L~~--G~IaEm~TGEGKTL~a~lp~~l~al~g-----------~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 82 RHFDVQLLGGMV-LDS--NRIAEMRTGEGKTLTATLPAYLNALTG-----------KGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred CcCchHHhcchH-hcC--CccccccCCCCchHHHHHHHHHHHhcC-----------CCEEEEeCCHHHHHHHHHHHHHHH
Confidence 345566543322 332 258899999999999999998776543 249999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCHhhh-ccccEEEcchhHH--HHHHhccC---CCccccccceEEeecccccc
Q 000114 575 QMYDVKVRELSGDQTLTRQQI-EETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~-~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~lIIiDEaH~l~ 636 (2158)
..+|++|+.++|+.+...+.. -.++|+++||..+ |.|..+.. .......+.+.||||||.++
T Consensus 148 ~~lGlsv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred HhcCCeEEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 999999999999887644433 3789999999996 76655522 11234678899999999663
|
|
| >KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-16 Score=178.74 Aligned_cols=279 Identities=24% Similarity=0.381 Sum_probs=216.4
Q ss_pred CCCCCHHHHHHHhhCCccC-----CCCcCChhHHHHHHHHhhcCCC---CCCCC-CC-ChhHHHHHHHHHHHcCCCCCCC
Q 000114 1021 KPTMGDIELCRLFSLSEEF-----KYVTVRQDEKMELAKLLDRVPI---PVKES-LE-EPSAKINVLLQAYISQLKLEGL 1090 (2158)
Q Consensus 1021 ~~~~~~~~~l~~~s~~~ef-----~~i~~r~~e~~~l~~l~~~~~~---~~~~~-~~-~~~~K~~~llq~~i~~~~~~~~ 1090 (2158)
.+.|...-++-+|+.|.|| +++.-|+.+.-++-.|+..++- .-++. .. .-+.|..+||.||+||++++.=
T Consensus 8 Tp~M~~kR~imVLags~EFdkqyNk~iqeR~tDn~evP~Lirqi~~vN~K~kE~PL~~pYslKaRvlLhahLsRmpl~~d 87 (520)
T KOG4434|consen 8 TPRMEIKRMIMVLAGSFEFDKQYNKEIQERETDNYEVPRLIRQIAGVNDKGKEQPLSQPYSLKARVLLHAHLSRMPLESD 87 (520)
T ss_pred CchhHHHHHHHHHhcccccChhhchhhhccCCcchHHHHHHHHcccccccccCCCccCchhHHHHHHHHHHHhcCCCChh
Confidence 3556667788899999999 5588888888888888876542 11111 11 3467999999999999999877
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHH-------Hc---CC--HHHHHHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHH
Q 000114 1091 SLTSDMVFITQSAGRLLRALFEIVL-------KR---GW--AQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKL 1158 (2158)
Q Consensus 1091 ~l~~d~~~i~~~a~ri~~a~~ei~~-------~~---~~--~~~~~~~~~l~~~v~~~~w~~~~~l~q~~~~~~~~~~~l 1158 (2158)
.|.-|..||+....|++.-|+..+- ++ .. .....++|.|+.|+.|++|...|||.|+|||.+.-++.+
T Consensus 88 tLEeDqqfiikkcp~lvqEMVnc~~qLi~May~r~~~r~psiet~eNcmKlspM~vQgLwqfkSPLLQLPHitednL~~~ 167 (520)
T KOG4434|consen 88 TLEEDQQFIIKKCPRLVQEMVNCSQQLIVMAYSRHTRRIPSIETFENCMKLSPMFVQGLWQFKSPLLQLPHITEDNLQHL 167 (520)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHHHHhccHHHHHHHHHhcChhhcCCccchHHHHHH
Confidence 8999999999999999988876432 11 11 245678999999999999999999999999999999999
Q ss_pred HhCC-C-CchhhccCChHHhhhhhcC-chhH-HHHHHHHhcCCcceEEEEEeecc---------CceEEEEEEEecCC--
Q 000114 1159 EKKD-F-AWERYYDLSPQELGELIRF-PKMG-RTLHKFVHQFPKLILAAHVQPIT---------RTVLKVELTITPDF-- 1223 (2158)
Q Consensus 1159 ~~~~-~-~~~~~~~~~~~~~~~~~~~-~~~~-~~i~~~~~~~P~~~~~~~~~p~~---------~~~~~~~l~~~~~~-- 1223 (2158)
.++- + +..++.-|.+++...||++ .... ..+...+..||.+.++...+-+. +.++.|.|++++.-
T Consensus 168 ~KKr~vks~qdla~lk~e~rr~lL~~LsdeeYe~vM~VLg~mP~~~~~ik~~V~dded~n~~TaG~vVTv~Vtl~R~~l~ 247 (520)
T KOG4434|consen 168 RKKRKVKSCQDLAVLKAETRRSLLRSLSDEEYEDVMVVLGMMPRLQIEIKTVVEDDEDKNELTAGCVVTVKVTLRRSRLI 247 (520)
T ss_pred hhhcccccHHHHhhcCHHHHHHHHHhcchHHHHHHHHHHccCcceEEEeeEEEecCCcccceeeeeEEEEEEEEEecccc
Confidence 7654 3 7788888899999999874 3333 78889999999999987766442 56777777775420
Q ss_pred --------------------------------------------------------------------------------
Q 000114 1224 -------------------------------------------------------------------------------- 1223 (2158)
Q Consensus 1224 -------------------------------------------------------------------------------- 1223 (2158)
T Consensus 248 d~~e~~~~d~~k~paedG~~de~n~ea~g~~~eaaa~~~~~~vKK~kpw~K~Kpk~~kkpaq~Q~~qK~v~~~aas~at~ 327 (520)
T KOG4434|consen 248 DPQEAGLADQYKKPAEDGGDDENNLEASGAPEEAAATVEEEEVKKRKPWEKNKPKQKKKPAQGQGQQKFVKKNAASPATE 327 (520)
T ss_pred ChHhhhhhhhhhCchhhCCCcccchhccCChhhhccccchhhhhhcCchhhcCCCcccCccccchhhhhcccccCChhhh
Confidence
Q ss_pred -------------------------------------------------cccCC-------------------CCCCccc
Q 000114 1224 -------------------------------------------------LWDDK-------------------VHGYVEP 1235 (2158)
Q Consensus 1224 -------------------------------------------------~~~~~-------------------~~~~~~~ 1235 (2158)
.|.+- ||++++|
T Consensus 328 ka~eeea~~~~sD~E~e~~n~Ds~dees~asd~~~D~e~~~~~ddddd~EWe~lqa~~~kr~~lEtKs~~tHtVh~pyFP 407 (520)
T KOG4434|consen 328 KALEEEAKDKGSDSEEEETNRDSQDEESDASDRDSDREQDEKQDDDDDAEWEELQASIQKRALLETKSKITHTVHSPYFP 407 (520)
T ss_pred hhhHHHhhhcCcchhhhhhcccccccccccCccccchhhccccccccHHHHHHHHHHHHHHHhhhcccccceeeccCCCc
Confidence 02110 8998887
Q ss_pred ------EEEEEEeCCCCeEeeeehhhhhccccccccEEEEEEeccCCCCCeEEEEEecccccCCCccccccc
Q 000114 1236 ------FWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF 1301 (2158)
Q Consensus 1236 ------~~~~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSd~wlg~e~~~~i~~ 1301 (2158)
||+.|.|.++..+|-.-+..-+-. -.++..+.|++| ..|+-++|.|.+-||+|+|.+...++.+
T Consensus 408 eEKqEwWW~Yi~drKsrtLlt~PyhV~tL~-d~eei~lkF~AP-~~pG~Ytytv~lrSDSYmg~dq~~~lKl 477 (520)
T KOG4434|consen 408 EEKQEWWWLYIADRKSRTLLTMPYHVCTLK-DTEEIELKFPAP-GKPGNYTYTVFLRSDSYMGLDQIKPLKL 477 (520)
T ss_pred chhhheeeeeeecccccceecchhhhhccc-ccceeEEeccCC-CCCCceEEEEEEecccccChhhccceee
Confidence 999999999888876665433221 147888999999 6899999999999999999998877654
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-15 Score=208.04 Aligned_cols=134 Identities=19% Similarity=0.324 Sum_probs=93.4
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHH
Q 000114 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2158)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v 812 (2158)
++++|||++|.+..+.++..|...... .++.++..+.. ..|..+
T Consensus 674 ~g~~LVlftS~~~l~~v~~~L~~~~~~-----------------------------------~~~~~l~q~~~-~~r~~l 717 (850)
T TIGR01407 674 SPKILVLFTSYEMLHMVYDMLNELPEF-----------------------------------EGYEVLAQGIN-GSRAKI 717 (850)
T ss_pred CCCEEEEeCCHHHHHHHHHHHhhhccc-----------------------------------cCceEEecCCC-ccHHHH
Confidence 578999999999999999888652211 11122233333 478899
Q ss_pred HHHHhCCCceEEEechhhhhccCCCceE--EEEecccccCCCCC----------------ccccC----CHHHHHHhhcc
Q 000114 813 EDLFGDGHVQVLVSTATLAWGVNLPAHT--VIIKGTQIYNPEKG----------------AWTEL----SPLDIMQMLGR 870 (2158)
Q Consensus 813 ~~~F~~g~i~VLVaT~tla~GVdlP~v~--vVI~~~~~yd~~~g----------------~~~~~----s~~~~~Qr~GR 870 (2158)
++.|++|...||+||+.+++|||+|+.. .||-...||.++.. .|.++ ....+.|.+||
T Consensus 718 l~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GR 797 (850)
T TIGR01407 718 KKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGR 797 (850)
T ss_pred HHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhcc
Confidence 9999999999999999999999999875 35556677765531 22333 34678999999
Q ss_pred cCCCCCCCccEEEEEcCCCcHHHHHHhhcCCCc
Q 000114 871 AGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (2158)
Q Consensus 871 AGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~p 903 (2158)
.=|...| .|..+++-..-....|-+.+-..+|
T Consensus 798 lIRs~~D-~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 798 LIRREND-RGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred ccccCCc-eEEEEEEccccccchHHHHHHHhCC
Confidence 9997644 6776666555444556555444455
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=7e-16 Score=201.06 Aligned_cols=112 Identities=18% Similarity=0.116 Sum_probs=87.3
Q ss_pred EEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcc-cC
Q 000114 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL-EK 1438 (2158)
Q Consensus 1360 vli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l-~~ 1438 (2158)
-|..++||.|||++|.+|++..... +. .+.+++|+..||.+-++.+. .+-..+|++|+.++|+.....+.- -.
T Consensus 98 ~IaEm~TGEGKTL~a~lp~~l~al~---g~--~VhIvT~ndyLA~RD~e~m~-~l~~~lGlsv~~i~~~~~~~~r~~~Y~ 171 (908)
T PRK13107 98 RIAEMRTGEGKTLTATLPAYLNALT---GK--GVHVITVNDYLARRDAENNR-PLFEFLGLTVGINVAGLGQQEKKAAYN 171 (908)
T ss_pred ccccccCCCCchHHHHHHHHHHHhc---CC--CEEEEeCCHHHHHHHHHHHH-HHHHhcCCeEEEecCCCCHHHHHhcCC
Confidence 5889999999999999999866654 33 58999999999999998877 454567999999999877654332 36
Q ss_pred CcEEEeCHHHH-HHHHhhh-hc---cccccceeEEEeccccccc
Q 000114 1439 GQIIISTPEKW-DALSRRW-KQ---RKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1439 ~~IIV~TPe~l-~~l~r~~-~~---~~~l~~v~llIiDEaH~l~ 1477 (2158)
++|+++||..+ .+++|.. .. ....+.+.++||||||.++
T Consensus 172 ~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 172 ADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred CCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 79999999998 5666653 11 1134678999999999664
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.1e-15 Score=204.60 Aligned_cols=205 Identities=17% Similarity=0.217 Sum_probs=118.5
Q ss_pred ceEEEeccCCC---ChHHHHHHhccCCCceEec-CCCCc-ccccEEEEec-ccccchHHHHHhcChHHHHHHHHhH-hcC
Q 000114 1502 IRIVALSTSLA---NAKDLGEWIGATSHGLFNF-PPGVR-PVPLEIHIQG-VDITNFEARMQAMTKPTFTAIVQHA-KNE 1574 (2158)
Q Consensus 1502 ~riV~lSATl~---n~~dl~~wl~~~~~~i~~f-~~~~r-pv~l~~~i~~-~~~~~~~~~~~~~~k~~~~~i~~~~-~~~ 1574 (2158)
..+|++|||+. +..-+.+.+|........+ .+.+. .....+.+.. .+....... ..........+.... ...
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~-~~~~~~ia~~i~~l~~~~~ 674 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSL-EEYAQEIASYIIEITAITS 674 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCCh-HHHHHHHHHHHHHHHHhcC
Confidence 56889999997 5667778888754332222 11111 1112222221 111110000 001111122222211 245
Q ss_pred CCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHH
Q 000114 1575 KPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSAL 1654 (2158)
Q Consensus 1575 ~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~ 1654 (2158)
+++|||++|.+..+.++..|.... ...++..+..+.. ..|..+++.
T Consensus 675 g~~LVlftS~~~l~~v~~~L~~~~---------------------------------~~~~~~~l~q~~~-~~r~~ll~~ 720 (850)
T TIGR01407 675 PKILVLFTSYEMLHMVYDMLNELP---------------------------------EFEGYEVLAQGIN-GSRAKIKKR 720 (850)
T ss_pred CCEEEEeCCHHHHHHHHHHHhhhc---------------------------------cccCceEEecCCC-ccHHHHHHH
Confidence 789999999999988886663211 0112333444443 578899999
Q ss_pred HHcCCceEEEecCccccccCCCcc---EEEEecceeecCC---------------CCcCc----CCCHHHHHHhhccCCC
Q 000114 1655 FEAGKIKVCVMSSSMCWGVPLTAH---LVVVMGTQYYDGQ---------------ENAHT----DYPVTDLLQMMGHASR 1712 (2158)
Q Consensus 1655 F~~g~i~VLVaT~~la~Gvdlp~~---~vVI~gt~~yd~~---------------~~~~~----~~s~~~~lQr~GRaGR 1712 (2158)
|++|+..||+||+.+.+|||+|+. .|||.+.++-.+. .+.+. |..+..+.|.+||.-|
T Consensus 721 F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIR 800 (850)
T TIGR01407 721 FNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIR 800 (850)
T ss_pred HHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccc
Confidence 999999999999999999999953 4556666654332 01112 2236778899999999
Q ss_pred CCCCCceEEEEEecCChHHHHHHHhhCCCc
Q 000114 1713 PLLDNSGKCVILCHAPRKEYYKKFLYDAFP 1742 (2158)
Q Consensus 1713 ~g~d~~G~~iil~~~~~~~~~~k~l~~~~p 1742 (2158)
.. +..|.++++-..-....|.+.+-..+|
T Consensus 801 s~-~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 801 RE-NDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred cC-CceEEEEEEccccccchHHHHHHHhCC
Confidence 86 567877776555444455444444444
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.7e-16 Score=183.89 Aligned_cols=363 Identities=10% Similarity=0.009 Sum_probs=232.7
Q ss_pred hHHHHHhcC--CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH
Q 000114 1330 PLYEALYQG--FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2158)
Q Consensus 1330 ~~~~~l~~g--f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~ 1407 (2158)
+....+|.+ -..+..+|.++++.+-+ ++|+++.-.|.+||.+|+.++....+.. .+.. ..+|+.|+++++....
T Consensus 273 E~~~~~~~~~~~E~~~~~~~~~~~~~~~-G~~~~~~~~~~~GK~~~~~~~s~~~~~~-~~~s--~~~~~~~~~~~~~~~~ 348 (1034)
T KOG4150|consen 273 ESIRSLLNKNTGESGIAISLELLKFASE-GRADGGNEARQAGKGTCPTSGSRKFQTL-CHAT--NSLLPSEMVEHLRNGS 348 (1034)
T ss_pred HHHHHHHhcccccchhhhhHHHHhhhhh-cccccccchhhcCCccCcccchhhhhhc-Cccc--ceecchhHHHHhhccC
Confidence 445566665 45788999999998865 6679999999999999999998877666 2333 6799999999998765
Q ss_pred HHHHHHhcCC---CCcEEEEEcCCcchhhhcc--cCCcEEEeCHHHHHH-HH-hhhhccccccceeEEEecccccccCCC
Q 000114 1408 RDWEIKFGQG---LGMRVVELTGETAMDLKLL--EKGQIIISTPEKWDA-LS-RRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (2158)
Q Consensus 1408 ~~~~~~f~~~---~g~~v~~ltG~~~~~~~~l--~~~~IIV~TPe~l~~-l~-r~~~~~~~l~~v~llIiDEaH~l~~~~ 1480 (2158)
+-+.-.+... -..-|-...|++....+.+ .+.+++++.|..... .+ .....+..+-...++++||+|......
T Consensus 349 ~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~ 428 (1034)
T KOG4150|consen 349 KGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPT 428 (1034)
T ss_pred CceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecch
Confidence 4332111111 0112333344444433322 345899999987643 22 222223345567889999999988776
Q ss_pred CChHHHHHHHHHHHHhhc--CCCceEEEeccCCCCh-HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHH
Q 000114 1481 GPVLEVIVSRMRYIASQV--ENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (2158)
Q Consensus 1481 g~~~e~~isrl~~i~~~~--~~~~riV~lSATl~n~-~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~ 1557 (2158)
|......+.++..++.-+ +.+.+++-.|||+.+. +...+..+...-.++....+-....+.+...+--.+.......
T Consensus 429 ~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~ 508 (1034)
T KOG4150|consen 429 KALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKS 508 (1034)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhh
Confidence 766666666665554432 3578999999999874 4444555555434444333222222222222211111111111
Q ss_pred hcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEE
Q 000114 1558 AMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVG 1637 (2158)
Q Consensus 1558 ~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~ 1637 (2158)
.........+.+.+..+-++|.||++|+-|+.+.....+.+... -. .+...|.
T Consensus 509 ~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET--------------------------~~-~LV~~i~ 561 (1034)
T KOG4150|consen 509 SKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAET--------------------------AP-HLVEAIT 561 (1034)
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHh--------------------------hH-HHHHHHH
Confidence 11222223333444668899999999999987765443211100 00 1112356
Q ss_pred EecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCC
Q 000114 1638 YLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN 1717 (2158)
Q Consensus 1638 ~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~ 1717 (2158)
.|.||-+.+||+.++...-.|++.-+|||++++-|||+.....|+ +..+|+|+..+.|..|||||...+.
T Consensus 562 SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl----------~~GFP~S~aNl~QQ~GRAGRRNk~S 631 (1034)
T KOG4150|consen 562 SYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVL----------HLGFPGSIANLWQQAGRAGRRNKPS 631 (1034)
T ss_pred hhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEE----------EccCchhHHHHHHHhccccccCCCc
Confidence 788999999999999999999999999999999999999998888 5678999999999999999987333
Q ss_pred ceEEEEEecCChHHHHH
Q 000114 1718 SGKCVILCHAPRKEYYK 1734 (2158)
Q Consensus 1718 ~G~~iil~~~~~~~~~~ 1734 (2158)
-...+ ....+-.++|-
T Consensus 632 Lavyv-a~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 632 LAVYV-AFLGPVDQYYM 647 (1034)
T ss_pred eEEEE-EeccchhhHhh
Confidence 33333 33334445554
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-15 Score=197.64 Aligned_cols=347 Identities=15% Similarity=0.130 Sum_probs=177.6
Q ss_pred CCHHHHHHHHHHHcC---------CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000114 496 LNRVQSRVYKSALSS---------ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2158)
Q Consensus 496 l~~iQ~~~i~~~l~~---------~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~ 566 (2158)
+++.|..|+..++.. .++.+++.|||||||+++...+...+... ...++|+|+|+++|..|+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~---------~~~~vl~lvdR~~L~~Q~ 309 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELL---------KNPKVFFVVDRRELDYQL 309 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhc---------CCCeEEEEECcHHHHHHH
Confidence 577888888776432 35799999999999999877765554322 345899999999999999
Q ss_pred HHHHHhhcccCCcEEEEEeCCC-ccCHhh-hccccEEEcchhHHHHHHhccCCCcccccc-ceEEeecccccccCChhhH
Q 000114 567 VGNLSNRLQMYDVKVRELSGDQ-TLTRQQ-IEETQIIVTTPEKWDIITRKSGDRTYTQLV-KLLIIDEIHLLHDNRGPVL 643 (2158)
Q Consensus 567 ~~~~~~~~~~~gi~v~~l~Gd~-~~~~~~-~~~~~IiV~TPekld~l~r~~~~~~~l~~v-~lIIiDEaH~l~d~rg~~l 643 (2158)
.+.|....... +. ..+.. .+.... .....|+|+|..++...............- -+||+||||+... | .+
T Consensus 310 ~~~f~~~~~~~---~~-~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~--~-~~ 382 (667)
T TIGR00348 310 MKEFQSLQKDC---AE-RIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY--G-EL 382 (667)
T ss_pred HHHHHhhCCCC---Cc-ccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--h-HH
Confidence 99998864310 10 01110 011111 124689999999974322111110111111 2899999997542 2 12
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccCChHHHH--HHHhccccCceEEecC-----CcccccceeEEEe----eccCCh
Q 000114 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVA--LFLRVNLEKGLFYFDN-----SYRPVPLSQQYIG----IQVKKP 712 (2158)
Q Consensus 644 e~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~--~~l~~~~~~~~~~f~~-----~~rpv~l~~~~~~----~~~~~~ 712 (2158)
...+. ..-++..++|||||+-...+-. ..++......++.+.- .-..+|+...... +.....
T Consensus 383 ~~~l~-------~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l 455 (667)
T TIGR00348 383 AKNLK-------KALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKL 455 (667)
T ss_pred HHHHH-------hhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHH
Confidence 22221 1235678999999964221111 1111100011111100 0001111110000 000000
Q ss_pred h----------------------H-HHHH---------hhHHHHHHHHHH----hC--CCeEEEEecChHHHHHHHHHHH
Q 000114 713 L----------------------Q-RFQL---------MNDLCYEKVVAV----AG--KHQVLIFVHSRKETAKTARAIR 754 (2158)
Q Consensus 713 ~----------------------~-~~~~---------l~~~~~~~i~~~----~~--~~~vLVFv~sr~~~~~~a~~L~ 754 (2158)
. + .... ....+...+.++ .. +++++|||.+|..|..++..|.
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~ 535 (667)
T TIGR00348 456 DAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALD 535 (667)
T ss_pred HHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHH
Confidence 0 0 0000 001111112222 12 4789999999999999999887
Q ss_pred HHhhccc-ccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCC-CHHHHHHHHHHHhC-CCceEEEechhhh
Q 000114 755 DTALEND-TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGM-TRGDRQLVEDLFGD-GHVQVLVSTATLA 831 (2158)
Q Consensus 755 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl-~~~~R~~v~~~F~~-g~i~VLVaT~tla 831 (2158)
+...... .....+.........+... .+.+... +..- .......+.+.|++ +.++|||+++.+.
T Consensus 536 ~~~~~~~~~~~vv~s~~~~~~~~~~~~---------~~~~~~~----~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmll 602 (667)
T TIGR00348 536 EELNEKFEASAIVMTGKESDDAEIRDY---------NKHIRTK----FDKSDGFEIYYKDLERFKKEENPKLLIVVDMLL 602 (667)
T ss_pred hhcccccCCeeEEecCCccchhHHHHH---------HHHhccc----cccchhhhHHHHHHHHhcCCCCceEEEEEcccc
Confidence 6542210 0000000000000001100 0011000 0000 01134568888976 7899999999999
Q ss_pred hccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCC
Q 000114 832 WGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2158)
Q Consensus 832 ~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2158)
.|+|.|.+.+++. |-+. .-..++|++||+.|+-...+-.++|+.-..
T Consensus 603 TGFDaP~l~tLyl-----dKpl------k~h~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 603 TGFDAPILNTLYL-----DKPL------KYHGLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred cccCCCccceEEE-----eccc------cccHHHHHHHHhccccCCCCCCEEEEECcC
Confidence 9999999998874 2221 222589999999995222233355554433
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-14 Score=184.38 Aligned_cols=312 Identities=17% Similarity=0.228 Sum_probs=181.7
Q ss_pred CCCCCHHHHHHHHHHH----cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000114 493 MTQLNRVQSRVYKSAL----SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~l----~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~ 568 (2158)
-..++.+|..|+..+. .++..+|+++.||+|||.+|+..|-+.+..+. -.+||+++-+++|+.|.+.
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~---------~KRVLFLaDR~~Lv~QA~~ 233 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGW---------VKRVLFLADRNALVDQAYG 233 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcch---------hheeeEEechHHHHHHHHH
Confidence 4578999999997654 35556999999999999999766555544332 2489999999999999999
Q ss_pred HHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhcc---CCCccccccceEEeecccccccCChhhHHH
Q 000114 569 NLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS---GDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645 (2158)
Q Consensus 569 ~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~---~~~~~l~~v~lIIiDEaH~l~d~rg~~le~ 645 (2158)
.|...+. .+-.+..+.+.... ..++|.|+|...+-...... ..+.....++||||||||+=.- ..+..
T Consensus 234 af~~~~P-~~~~~n~i~~~~~~-----~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~---~~~~~ 304 (875)
T COG4096 234 AFEDFLP-FGTKMNKIEDKKGD-----TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIY---SEWSS 304 (875)
T ss_pred HHHHhCC-CccceeeeecccCC-----cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHH---hhhHH
Confidence 9888654 44444444443222 15799999999873222222 1234456689999999996221 11234
Q ss_pred HHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEec----------CCccccc--ceeEEEeeccCChh
Q 000114 646 IVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFD----------NSYRPVP--LSQQYIGIQVKKPL 713 (2158)
Q Consensus 646 iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~----------~~~rpv~--l~~~~~~~~~~~~~ 713 (2158)
|+..+ ....+|++||+.+..+...+--.+ ..+++.++ ..++++. +....-|+......
T Consensus 305 I~dYF---------dA~~~gLTATP~~~~d~~T~~~F~-g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~s 374 (875)
T COG4096 305 ILDYF---------DAATQGLTATPKETIDRSTYGFFN-GEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGS 374 (875)
T ss_pred HHHHH---------HHHHHhhccCcccccccccccccC-CCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccc
Confidence 44333 122367799976543333322111 01111110 0112211 11111111111100
Q ss_pred ----------------------HHH---HHhhHHHHHHHHHHh-----C--CCeEEEEecChHHHHHHHHHHHHHhhccc
Q 000114 714 ----------------------QRF---QLMNDLCYEKVVAVA-----G--KHQVLIFVHSRKETAKTARAIRDTALEND 761 (2158)
Q Consensus 714 ----------------------~~~---~~l~~~~~~~i~~~~-----~--~~~vLVFv~sr~~~~~~a~~L~~~~~~~~ 761 (2158)
.+. ..-.+.+...+.+.. + .+++||||.+..+|+.+...|.+......
T Consensus 375 erek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~ 454 (875)
T COG4096 375 EREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYN 454 (875)
T ss_pred hhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcccc
Confidence 000 000111111222221 1 35899999999999999999987643311
Q ss_pred ccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHh-CCCceEEEechhhhhccCCCceE
Q 000114 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG-DGHVQVLVSTATLAWGVNLPAHT 840 (2158)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~-~g~i~VLVaT~tla~GVdlP~v~ 840 (2158)
+.+ +....+ =....+..+-+.+. +.--+|.|+.+.|..|||+|.+.
T Consensus 455 --~~~------------------------------a~~IT~-d~~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~ 501 (875)
T COG4096 455 --GRY------------------------------AMKITG-DAEQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVV 501 (875)
T ss_pred --Cce------------------------------EEEEec-cchhhHHHHHHHHhcCCCCceEEehhhhhcCCCchhee
Confidence 000 111122 22334444544444 45568999999999999999998
Q ss_pred EEEecccccCCCCCccccCCHHHHHHhhcccCCCC
Q 000114 841 VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQ 875 (2158)
Q Consensus 841 vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g 875 (2158)
.++- +-.- .|..-|.||+||+-|.-
T Consensus 502 nlVF-----~r~V-----rSktkF~QMvGRGTRl~ 526 (875)
T COG4096 502 NLVF-----DRKV-----RSKTKFKQMVGRGTRLC 526 (875)
T ss_pred eeee-----hhhh-----hhHHHHHHHhcCccccC
Confidence 8884 3221 27888999999999963
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-14 Score=193.31 Aligned_cols=349 Identities=14% Similarity=0.109 Sum_probs=180.8
Q ss_pred CCCHHHHHHHHHHhc---------CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHH
Q 000114 1341 HFNPIQTQVFTVLYN---------TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~---------~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~ 1411 (2158)
.+++.|..|+..+++ +.++.+|..|||||||+++...+...+.. ... +++|+|+|+++|..|..+.|.
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~-~~~--~~vl~lvdR~~L~~Q~~~~f~ 314 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL-LKN--PKVFFVVDRRELDYQLMKEFQ 314 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh-cCC--CeEEEEECcHHHHHHHHHHHH
Confidence 367889999888643 23579999999999999987666554433 223 399999999999999999998
Q ss_pred HHhcCCCCcEEEEEcCCcchhh-hccc--CCcEEEeCHHHHHHHHhhhhcccccc-ceeEEEecccccccCCCCChHHHH
Q 000114 1412 IKFGQGLGMRVVELTGETAMDL-KLLE--KGQIIISTPEKWDALSRRWKQRKYVQ-QVSLFIIDELHLIGGQGGPVLEVI 1487 (2158)
Q Consensus 1412 ~~f~~~~g~~v~~ltG~~~~~~-~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~-~v~llIiDEaH~l~~~~g~~~e~~ 1487 (2158)
. ++.. .+. ..+. ..+. ..+. ...|+|+|.+++......+....... .-.+||+||||+.... . +
T Consensus 315 ~-~~~~---~~~-~~~s-~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~---~---~ 382 (667)
T TIGR00348 315 S-LQKD---CAE-RIES-IAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG---E---L 382 (667)
T ss_pred h-hCCC---CCc-ccCC-HHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch---H---H
Confidence 4 4321 010 0111 1111 1122 35899999999875433321111111 1128999999976421 1 2
Q ss_pred HHHHHHHHhhcCCCceEEEeccCCCChHH--HHHHhccC-CCceEecCC-----CCcccccEEEEec----ccccc----
Q 000114 1488 VSRMRYIASQVENKIRIVALSTSLANAKD--LGEWIGAT-SHGLFNFPP-----GVRPVPLEIHIQG----VDITN---- 1551 (2158)
Q Consensus 1488 isrl~~i~~~~~~~~riV~lSATl~n~~d--l~~wl~~~-~~~i~~f~~-----~~rpv~l~~~i~~----~~~~~---- 1551 (2158)
...|+. .+ ++...+|||||+-...+ -...++.. ...++.+.- ..-.+|+...... .+...
T Consensus 383 ~~~l~~---~~-p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~ 458 (667)
T TIGR00348 383 AKNLKK---AL-KNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAF 458 (667)
T ss_pred HHHHHh---hC-CCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHH
Confidence 222322 22 35789999999854211 11122211 011111100 0011111111000 00000
Q ss_pred hHHHHH-------------------h-----c----ChHHHHHHHHhH----h-cCCCEEEEecChHHHHHHHHHHHhhc
Q 000114 1552 FEARMQ-------------------A-----M----TKPTFTAIVQHA----K-NEKPALVFVPSRKYVRLTAVDLMTYS 1598 (2158)
Q Consensus 1552 ~~~~~~-------------------~-----~----~k~~~~~i~~~~----~-~~~~~IVFv~sr~~~~~~a~~L~~~~ 1598 (2158)
+..... . . .......+..+. . .+++++|||.++..|..+...|....
T Consensus 459 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~ 538 (667)
T TIGR00348 459 FDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEEL 538 (667)
T ss_pred HHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhc
Confidence 000000 0 0 011111222221 1 24789999999999999998876543
Q ss_pred ccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHc-CCceEEEecCccccccCCCc
Q 000114 1599 SMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA-GKIKVCVMSSSMCWGVPLTA 1677 (2158)
Q Consensus 1599 ~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~-g~i~VLVaT~~la~Gvdlp~ 1677 (2158)
..........++..... .... ......+... +...-.......+.+.|++ +.++|||+++.+..|+|.|.
T Consensus 539 ~~~~~~~~vv~s~~~~~-~~~~-----~~~~~~~~~~---~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~ 609 (667)
T TIGR00348 539 NEKFEASAIVMTGKESD-DAEI-----RDYNKHIRTK---FDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPI 609 (667)
T ss_pred ccccCCeeEEecCCccc-hhHH-----HHHHHHhccc---cccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCc
Confidence 32210000011111000 0000 0111111110 0000001234568888976 68999999999999999998
Q ss_pred cEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC
Q 000114 1678 HLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1678 ~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~ 1728 (2158)
..+++++. |+.-..++|++||+.|.-..++-.++|+..-.
T Consensus 610 l~tLyldK-----------plk~h~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 610 LNTLYLDK-----------PLKYHGLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred cceEEEec-----------cccccHHHHHHHHhccccCCCCCCEEEEECcC
Confidence 88887432 33334589999999995222333345555444
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.7e-14 Score=184.02 Aligned_cols=126 Identities=20% Similarity=0.222 Sum_probs=101.7
Q ss_pred HHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecC
Q 000114 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (2158)
Q Consensus 1562 ~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~ 1641 (2158)
.....+......+.++||||+|++.++.++..|.. .+..+.++|+
T Consensus 430 ~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~-----------------------------------~gi~~~~lh~ 474 (655)
T TIGR00631 430 DLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKE-----------------------------------LGIKVRYLHS 474 (655)
T ss_pred HHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhh-----------------------------------hccceeeeeC
Confidence 34445555556788999999999999999866632 2345788999
Q ss_pred CCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEE
Q 000114 1642 GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1721 (2158)
Q Consensus 1642 ~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~ 1721 (2158)
+++..+|..+++.|+.|.+.|||||+.+++|+|+|.+.+|| .++.. ....|-+..+|+||+|||||. ..|.|
T Consensus 475 ~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVv----i~Dad-ifG~p~~~~~~iqriGRagR~---~~G~v 546 (655)
T TIGR00631 475 EIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVA----ILDAD-KEGFLRSERSLIQTIGRAARN---VNGKV 546 (655)
T ss_pred CCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEE----EeCcc-cccCCCCHHHHHHHhcCCCCC---CCCEE
Confidence 99999999999999999999999999999999999998776 23322 233566889999999999995 47999
Q ss_pred EEEecCChH
Q 000114 1722 VILCHAPRK 1730 (2158)
Q Consensus 1722 iil~~~~~~ 1730 (2158)
++++.....
T Consensus 547 i~~~~~~~~ 555 (655)
T TIGR00631 547 IMYADKITD 555 (655)
T ss_pred EEEEcCCCH
Confidence 998887553
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4e-14 Score=179.54 Aligned_cols=311 Identities=16% Similarity=0.158 Sum_probs=181.8
Q ss_pred CCCCHHHHHHHHHHh----cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1340 KHFNPIQTQVFTVLY----NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~----~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
..++.+|..|+..+. ++...+|+++.||+|||..| ++++..+.+....+ |+++++-+++|+.|.+..+. .|-
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~~~K--RVLFLaDR~~Lv~QA~~af~-~~~ 239 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSGWVK--RVLFLADRNALVDQAYGAFE-DFL 239 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcchhh--eeeEEechHHHHHHHHHHHH-HhC
Confidence 478999999998864 35666999999999999999 55555555544455 99999999999999999888 444
Q ss_pred CCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhh---hccccccceeEEEecccccccCCCCChHHHHHHHHH
Q 000114 1416 QGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRW---KQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492 (2158)
Q Consensus 1416 ~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~---~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~ 1492 (2158)
.. +-.+..+++... ...++|.|+|...+......- ..+.....++||||||||+=.-. -+..+ +-
T Consensus 240 P~-~~~~n~i~~~~~-----~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~---~~~~I---~d 307 (875)
T COG4096 240 PF-GTKMNKIEDKKG-----DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYS---EWSSI---LD 307 (875)
T ss_pred CC-ccceeeeecccC-----CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHh---hhHHH---HH
Confidence 33 344444443221 125699999999876654432 11224556999999999953211 11122 22
Q ss_pred HHHhhcCCCceEEEeccCCCChHHH--HHHh-ccCCCce----------EecCCCCcccccEEEEecccccchHHH----
Q 000114 1493 YIASQVENKIRIVALSTSLANAKDL--GEWI-GATSHGL----------FNFPPGVRPVPLEIHIQGVDITNFEAR---- 1555 (2158)
Q Consensus 1493 ~i~~~~~~~~riV~lSATl~n~~dl--~~wl-~~~~~~i----------~~f~~~~rpv~l~~~i~~~~~~~~~~~---- 1555 (2158)
++ +...++++||+.+..+. -.++ |.+ ... |..++..-.+++.....|........+
T Consensus 308 YF------dA~~~gLTATP~~~~d~~T~~~F~g~P-t~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~ 380 (875)
T COG4096 308 YF------DAATQGLTATPKETIDRSTYGFFNGEP-TYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQ 380 (875)
T ss_pred HH------HHHHHhhccCcccccccccccccCCCc-ceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhh
Confidence 33 22346779998764332 2334 222 111 111211112222222222222111000
Q ss_pred ------------------H---HhcChHHHHHHHHhHhc------CCCEEEEecChHHHHHHHHHHHhhcccCCcccccc
Q 000114 1556 ------------------M---QAMTKPTFTAIVQHAKN------EKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608 (2158)
Q Consensus 1556 ------------------~---~~~~k~~~~~i~~~~~~------~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~ 1608 (2158)
. ..-...+...+..++.+ -+++||||.+..+|+.+...|.......
T Consensus 381 g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~------- 453 (875)
T COG4096 381 GEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEY------- 453 (875)
T ss_pred ccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccc-------
Confidence 0 00011122222233333 3579999999999999998875432210
Q ss_pred cCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHH-cCCceEEEecCccccccCCCccEEEEeccee
Q 000114 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFE-AGKIKVCVMSSSMCWGVPLTAHLVVVMGTQY 1687 (2158)
Q Consensus 1609 l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~-~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~ 1687 (2158)
-+.=+..+.+.- ...+..+-.-+. +.--+|.|+.+.+..|||+|.+..+|..
T Consensus 454 -----------------------~~~~a~~IT~d~-~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~--- 506 (875)
T COG4096 454 -----------------------NGRYAMKITGDA-EQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFD--- 506 (875)
T ss_pred -----------------------cCceEEEEeccc-hhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeeh---
Confidence 011133444433 333344433333 3446899999999999999977766611
Q ss_pred ecCCCCcCcCCCHHHHHHhhccCCCCC
Q 000114 1688 YDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2158)
Q Consensus 1688 yd~~~~~~~~~s~~~~lQr~GRaGR~g 1714 (2158)
- .-.|.+.|.||+||+-|.-
T Consensus 507 --r-----~VrSktkF~QMvGRGTRl~ 526 (875)
T COG4096 507 --R-----KVRSKTKFKQMVGRGTRLC 526 (875)
T ss_pred --h-----hhhhHHHHHHHhcCccccC
Confidence 1 1237899999999999953
|
|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.9e-14 Score=169.68 Aligned_cols=347 Identities=12% Similarity=0.040 Sum_probs=226.9
Q ss_pred hhhHhhcCCC--CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000114 484 EWAQPAFKGM--TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2158)
Q Consensus 484 ~~~~~~f~g~--~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ka 561 (2158)
+.+...+.|. +.+..+|.+++..+-+| +|+++.-.|.|||.+|+.++....+..... ...+|+.||++
T Consensus 273 E~~~~~~~~~~~E~~~~~~~~~~~~~~~G-~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~---------s~~~~~~~~~~ 342 (1034)
T KOG4150|consen 273 ESIRSLLNKNTGESGIAISLELLKFASEG-RADGGNEARQAGKGTCPTSGSRKFQTLCHA---------TNSLLPSEMVE 342 (1034)
T ss_pred HHHHHHHhcccccchhhhhHHHHhhhhhc-ccccccchhhcCCccCcccchhhhhhcCcc---------cceecchhHHH
Confidence 3345555454 46788999999986555 679999999999999999988877665432 25799999999
Q ss_pred HHHHHHHHHHhhcccC----CcEEEEEeCCCccCHhh--hccccEEEcchhHH--HHHHhccCCCccccccceEEeeccc
Q 000114 562 LVAEVVGNLSNRLQMY----DVKVRELSGDQTLTRQQ--IEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIH 633 (2158)
Q Consensus 562 La~q~~~~~~~~~~~~----gi~v~~l~Gd~~~~~~~--~~~~~IiV~TPekl--d~l~r~~~~~~~l~~v~lIIiDEaH 633 (2158)
+++...+.+.-.+... +.-|....|+...++.. ..+.+++++.|... ..+.+......++-...++++||+|
T Consensus 343 ~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~ 422 (1034)
T KOG4150|consen 343 HLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCA 422 (1034)
T ss_pred HhhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhccccee
Confidence 9987765443322211 12234445555444433 45789999999875 3333333334555667899999999
Q ss_pred ccccCChhhHHHHHHHHHHHHhh--ccccccEEEEccccCChHHHHHHH-hccccCceEEecCCcccccceeEEEeec--
Q 000114 634 LLHDNRGPVLESIVARTVRQIET--TKEHIRLVGLSATLPNYEDVALFL-RVNLEKGLFYFDNSYRPVPLSQQYIGIQ-- 708 (2158)
Q Consensus 634 ~l~d~rg~~le~iv~r~~~~~~~--~~~~~riv~lSATlpn~~dv~~~l-~~~~~~~~~~f~~~~rpv~l~~~~~~~~-- 708 (2158)
.+...+|......+.++.+.... ...+.+++-.|||+.+......-+ +.+ ...+...+++ |..-. +++...
T Consensus 423 ~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~-E~~Li~~DGS--Ps~~K-~~V~WNP~ 498 (1034)
T KOG4150|consen 423 LYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLS-ELELVTIDGS--PSSEK-LFVLWNPS 498 (1034)
T ss_pred eeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCc-ceEEEEecCC--CCccc-eEEEeCCC
Confidence 99877887777777776655432 245789999999987654433322 222 2223333332 22111 111111
Q ss_pred -----cCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhc
Q 000114 709 -----VKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM 783 (2158)
Q Consensus 709 -----~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 783 (2158)
..+..........++.+.+. .+-++|-||.+|+-|+-+....++...+...
T Consensus 499 ~~P~~~~~~~~~i~E~s~~~~~~i~---~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~--------------------- 554 (1034)
T KOG4150|consen 499 APPTSKSEKSSKVVEVSHLFAEMVQ---HGLRCIAFCPSRKLCELVLCLTREILAETAP--------------------- 554 (1034)
T ss_pred CCCcchhhhhhHHHHHHHHHHHHHH---cCCcEEEeccHHHHHHHHHHHHHHHHHHhhH---------------------
Confidence 11111222222333333332 2568999999999998877766654332211
Q ss_pred cCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHH
Q 000114 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLD 863 (2158)
Q Consensus 784 ~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~ 863 (2158)
.|.+ .|.-+.||-+.+||+.++...-.|++.-+|||++|+-|||+...+.|++...|| |.+.
T Consensus 555 ----~LV~----~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~----------S~aN 616 (1034)
T KOG4150|consen 555 ----HLVE----AITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPG----------SIAN 616 (1034)
T ss_pred ----HHHH----HHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCch----------hHHH
Confidence 1111 122347999999999999999999999999999999999999999999854443 7889
Q ss_pred HHHhhcccCCCCCCCccEEEEEcCC
Q 000114 864 IMQMLGRAGRPQYDSYGEGIIITGH 888 (2158)
Q Consensus 864 ~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2158)
+.|.+|||||...+ ..++.+...
T Consensus 617 l~QQ~GRAGRRNk~--SLavyva~~ 639 (1034)
T KOG4150|consen 617 LWQQAGRAGRRNKP--SLAVYVAFL 639 (1034)
T ss_pred HHHHhccccccCCC--ceEEEEEec
Confidence 99999999997744 555555443
|
|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-14 Score=172.85 Aligned_cols=289 Identities=21% Similarity=0.264 Sum_probs=186.6
Q ss_pred EEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh-cccC
Q 000114 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK-LLEK 1438 (2158)
Q Consensus 1360 vli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~-~l~~ 1438 (2158)
++-+|||.||||--| ++++.. .+ +.||--|.|-||.++++++.+ .|+.+..+||+...... .-..
T Consensus 194 i~H~GPTNSGKTy~A----Lqrl~~---ak--sGvycGPLrLLA~EV~~r~na-----~gipCdL~TGeE~~~~~~~~~~ 259 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRA----LQRLKS---AK--SGVYCGPLRLLAHEVYDRLNA-----LGIPCDLLTGEERRFVLDNGNP 259 (700)
T ss_pred EEEeCCCCCchhHHH----HHHHhh---hc--cceecchHHHHHHHHHHHhhh-----cCCCccccccceeeecCCCCCc
Confidence 667899999999655 566655 33 679999999999999998873 38899999997654321 1224
Q ss_pred CcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHH
Q 000114 1439 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDL 1517 (2158)
Q Consensus 1439 ~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl 1517 (2158)
++.+=||-|+.. .-..+++.||||++++.+ .||..|-..+--+. ...+.+.|=-|-++=.+++
T Consensus 260 a~hvScTVEM~s----------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~------AdEiHLCGepsvldlV~~i 323 (700)
T KOG0953|consen 260 AQHVSCTVEMVS----------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLA------ADEIHLCGEPSVLDLVRKI 323 (700)
T ss_pred ccceEEEEEEee----------cCCceEEEEehhHHhhcCcccchHHHHHHHhhh------hhhhhccCCchHHHHHHHH
Confidence 578888877532 124578999999999988 57877654432221 1233333322222212333
Q ss_pred HHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhh
Q 000114 1518 GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTY 1597 (2158)
Q Consensus 1518 ~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~ 1597 (2158)
.+-.|... ....-.|-.|+.+. ......+. .+.++. ++ .|-|++..-.+...+
T Consensus 324 ~k~TGd~v----ev~~YeRl~pL~v~-----------------~~~~~sl~-nlk~GD-Cv-V~FSkk~I~~~k~kI--- 376 (700)
T KOG0953|consen 324 LKMTGDDV----EVREYERLSPLVVE-----------------ETALGSLS-NLKPGD-CV-VAFSKKDIFTVKKKI--- 376 (700)
T ss_pred HhhcCCee----EEEeecccCcceeh-----------------hhhhhhhc-cCCCCC-eE-EEeehhhHHHHHHHH---
Confidence 33222221 11111122222111 11111121 113333 33 344666554444333
Q ss_pred cccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHc--CCceEEEecCccccccCC
Q 000114 1598 SSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA--GKIKVCVMSSSMCWGVPL 1675 (2158)
Q Consensus 1598 ~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~--g~i~VLVaT~~la~Gvdl 1675 (2158)
.....+.+++++|+|+++.|..--.+|.+ +..+|||||+++++|+|+
T Consensus 377 -------------------------------E~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL 425 (700)
T KOG0953|consen 377 -------------------------------EKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL 425 (700)
T ss_pred -------------------------------HHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc
Confidence 22234558999999999999999999987 899999999999999999
Q ss_pred CccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCC-CceEEEEEecCChHHHHHHHhhC
Q 000114 1676 TAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD-NSGKCVILCHAPRKEYYKKFLYD 1739 (2158)
Q Consensus 1676 p~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d-~~G~~iil~~~~~~~~~~k~l~~ 1739 (2158)
.-.++|..+...|+|++ ..+++..+..|.+|||||.|.. ..|.+..|..+ +-..+++.|+.
T Consensus 426 ~IrRiiF~sl~Kysg~e--~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~e-DL~~L~~~l~~ 487 (700)
T KOG0953|consen 426 NIRRIIFYSLIKYSGRE--TEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSE-DLKLLKRILKR 487 (700)
T ss_pred ceeEEEEeecccCCccc--ceeccHHHHHHHhhcccccccCCcCceEEEeeHh-hHHHHHHHHhC
Confidence 99999998889999875 5788999999999999997632 34666555443 34556666653
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-13 Score=186.98 Aligned_cols=324 Identities=18% Similarity=0.216 Sum_probs=188.3
Q ss_pred CCCHHHHHHHHHHHc---CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSALS---SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~---~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
+|.++|.+.+..++. .+.+.|++-..|.|||+.++..+ ..+..... ....+|||+|. +|+.++.+.|.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL-~~L~~~~~-------~~gp~LIVvP~-SlL~nW~~Ei~ 239 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL-GYLHEYRG-------ITGPHMVVAPK-STLGNWMNEIR 239 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHH-HHHHHhcC-------CCCCEEEEeCh-HHHHHHHHHHH
Confidence 789999999987653 45578999999999999875444 33332211 12258999995 77889999998
Q ss_pred hhcccCCcEEEEEeCCCccCHhh------hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHH
Q 000114 572 NRLQMYDVKVRELSGDQTLTRQQ------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~ 645 (2158)
+++. .+++..++|+....... ....+|+|+|.+.+. +.... ..--..++|||||||.+-....
T Consensus 240 kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~---~e~~~-L~k~~W~~VIvDEAHrIKN~~S----- 308 (1033)
T PLN03142 240 RFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAI---KEKTA-LKRFSWRYIIIDEAHRIKNENS----- 308 (1033)
T ss_pred HHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHH---HHHHH-hccCCCCEEEEcCccccCCHHH-----
Confidence 8764 46788888865422111 235789999999752 11100 1112358999999999864322
Q ss_pred HHHHHHHHHhhccccccEEEEccccC--ChHHHHHHHhccccCceEE----e------cC-------------Cccc---
Q 000114 646 IVARTVRQIETTKEHIRLVGLSATLP--NYEDVALFLRVNLEKGLFY----F------DN-------------SYRP--- 697 (2158)
Q Consensus 646 iv~r~~~~~~~~~~~~riv~lSATlp--n~~dv~~~l~~~~~~~~~~----f------~~-------------~~rp--- 697 (2158)
..++.++.+ . ....++||+|+- +..++...+..-.+ +.|. | .. -.+|
T Consensus 309 klskalr~L---~-a~~RLLLTGTPlqNnl~ELwsLL~FL~P-~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~L 383 (1033)
T PLN03142 309 LLSKTMRLF---S-TNYRLLITGTPLQNNLHELWALLNFLLP-EIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLL 383 (1033)
T ss_pred HHHHHHHHh---h-cCcEEEEecCCCCCCHHHHHHHHhcCCC-CcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHh
Confidence 122222222 2 234588999942 34444443332110 0000 0 00 0000
Q ss_pred ----------cc-ceeEEEeeccCChhHH-HHH------------------hh------HHH------------------
Q 000114 698 ----------VP-LSQQYIGIQVKKPLQR-FQL------------------MN------DLC------------------ 723 (2158)
Q Consensus 698 ----------v~-l~~~~~~~~~~~~~~~-~~~------------------l~------~~~------------------ 723 (2158)
.| .....+.+........ +.. ++ ..|
T Consensus 384 RR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~ 463 (1033)
T PLN03142 384 RRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTG 463 (1033)
T ss_pred hhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccch
Confidence 01 1111111111100000 000 00 000
Q ss_pred ------------HHHHHHHh--CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchh
Q 000114 724 ------------YEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDL 789 (2158)
Q Consensus 724 ------------~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 789 (2158)
...++... .+.++|||+........+...|...
T Consensus 464 e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~--------------------------------- 510 (1033)
T PLN03142 464 EHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYR--------------------------------- 510 (1033)
T ss_pred hHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHc---------------------------------
Confidence 00011111 1345666665544333333333221
Q ss_pred hhhccCCeEEecCCCCHHHHHHHHHHHhCC---CceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHH
Q 000114 790 KDLLPYGFAIHHAGMTRGDRQLVEDLFGDG---HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ 866 (2158)
Q Consensus 790 ~~ll~~gv~~hHagl~~~~R~~v~~~F~~g---~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Q 866 (2158)
.+++..+||+++..+|..+++.|.+. ..-+|+||.+.+.||||...++||.++.+|+|. ...|
T Consensus 511 ----g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~----------~d~Q 576 (1033)
T PLN03142 511 ----GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQ----------VDLQ 576 (1033)
T ss_pred ----CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChH----------HHHH
Confidence 24456679999999999999999753 346789999999999999999999977666654 6999
Q ss_pred hhcccCCCCCCCccEEEEEcCCCc
Q 000114 867 MLGRAGRPQYDSYGEGIIITGHSE 890 (2158)
Q Consensus 867 r~GRAGR~g~d~~G~~iil~~~~~ 890 (2158)
++|||-|.|....-.+|.++..+.
T Consensus 577 AidRaHRIGQkk~V~VyRLIt~gT 600 (1033)
T PLN03142 577 AQDRAHRIGQKKEVQVFRFCTEYT 600 (1033)
T ss_pred HHHHhhhcCCCceEEEEEEEeCCc
Confidence 999999999766555666666654
|
|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-14 Score=173.30 Aligned_cols=289 Identities=22% Similarity=0.315 Sum_probs=190.4
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHh
Q 000114 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593 (2158)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~ 593 (2158)
++=+|||.||||.-| |+.+.... +.+|--|.|-||.|++++++.. |+.+..+||.......
T Consensus 194 i~H~GPTNSGKTy~A----Lqrl~~ak-----------sGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~ 254 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRA----LQRLKSAK-----------SGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVL 254 (700)
T ss_pred EEEeCCCCCchhHHH----HHHHhhhc-----------cceecchHHHHHHHHHHHhhhc----CCCccccccceeeecC
Confidence 667899999999765 45555432 5799999999999999998875 8899999997543322
Q ss_pred h-hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccC
Q 000114 594 Q-IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (2158)
Q Consensus 594 ~-~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlp 671 (2158)
. -..++.+-||-|... .-..+++.||||+++|.| .||..+-..+--+ ....+.+.|=-|-++
T Consensus 255 ~~~~~a~hvScTVEM~s----------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl------~AdEiHLCGepsvld 318 (700)
T KOG0953|consen 255 DNGNPAQHVSCTVEMVS----------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGL------AADEIHLCGEPSVLD 318 (700)
T ss_pred CCCCcccceEEEEEEee----------cCCceEEEEehhHHhhcCcccchHHHHHHHhh------hhhhhhccCCchHHH
Confidence 1 234678888888522 223478999999999999 6998887554433 223455555434433
Q ss_pred ChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHH
Q 000114 672 NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTAR 751 (2158)
Q Consensus 672 n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~ 751 (2158)
-|...+...... +....-.|-.|+... +.....+ .....+.++ .|-||++...+..
T Consensus 319 ---lV~~i~k~TGd~--vev~~YeRl~pL~v~-----------------~~~~~sl-~nlk~GDCv-V~FSkk~I~~~k~ 374 (700)
T KOG0953|consen 319 ---LVRKILKMTGDD--VEVREYERLSPLVVE-----------------ETALGSL-SNLKPGDCV-VAFSKKDIFTVKK 374 (700)
T ss_pred ---HHHHHHhhcCCe--eEEEeecccCcceeh-----------------hhhhhhh-ccCCCCCeE-EEeehhhHHHHHH
Confidence 233333222111 111111122222210 0111112 122344443 3457788877777
Q ss_pred HHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhC--CCceEEEechh
Q 000114 752 AIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD--GHVQVLVSTAT 829 (2158)
Q Consensus 752 ~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~--g~i~VLVaT~t 829 (2158)
.+...+. ..+++.+|+|+++.|..--.+|.+ +..+|||||++
T Consensus 375 kIE~~g~------------------------------------~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDA 418 (700)
T KOG0953|consen 375 KIEKAGN------------------------------------HKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDA 418 (700)
T ss_pred HHHHhcC------------------------------------cceEEEecCCCCchhHHHHHHhCCCCCccceEEeecc
Confidence 7766542 236778999999999999999987 99999999999
Q ss_pred hhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEc-CCCcHHHHHHhhcC
Q 000114 830 LAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT-GHSELRYYLSLMNQ 900 (2158)
Q Consensus 830 la~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~-~~~~~~~y~~ll~~ 900 (2158)
.++|+|+.-.++|+..-..|+... ..+++..+..|.+|||||-|-. ...+++-+ ...++..+.+.+..
T Consensus 419 IGMGLNL~IrRiiF~sl~Kysg~e--~~~it~sqikQIAGRAGRf~s~-~~~G~vTtl~~eDL~~L~~~l~~ 487 (700)
T KOG0953|consen 419 IGMGLNLNIRRIIFYSLIKYSGRE--TEDITVSQIKQIAGRAGRFGSK-YPQGEVTTLHSEDLKLLKRILKR 487 (700)
T ss_pred cccccccceeEEEEeecccCCccc--ceeccHHHHHHHhhcccccccC-CcCceEEEeeHhhHHHHHHHHhC
Confidence 999999988888887667777543 6889999999999999997532 23333333 33556666665553
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4e-13 Score=182.22 Aligned_cols=323 Identities=16% Similarity=0.204 Sum_probs=184.9
Q ss_pred CCCHHHHHHHHHHh---cCCCcEEEEccCCchhHHHHHHHHHHHHHhh-cCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000114 1341 HFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~---~~~~nvli~ApTGSGKTl~a~l~il~~l~~~-~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~ 1416 (2158)
.+.|+|.+.+.-++ ..+.+.|++-..|.|||+.+ ++++..+... ...+ .+|||+|. +++.++.+.+. +|..
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQa-IalL~~L~~~~~~~g--p~LIVvP~-SlL~nW~~Ei~-kw~p 243 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQT-ISLLGYLHEYRGITG--PHMVVAPK-STLGNWMNEIR-RFCP 243 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHH-HHHHHHHHHhcCCCC--CEEEEeCh-HHHHHHHHHHH-HHCC
Confidence 68899999998764 35667999999999999987 4444444331 2233 68999996 77788888887 4443
Q ss_pred CCCcEEEEEcCCcchhhh------cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHH
Q 000114 1417 GLGMRVVELTGETAMDLK------LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSR 1490 (2158)
Q Consensus 1417 ~~g~~v~~ltG~~~~~~~------~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isr 1490 (2158)
..++..++|....... .....+|+|+|.+.+...... ..--..++||+||||.+-.... ..++
T Consensus 244 --~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~----L~k~~W~~VIvDEAHrIKN~~S-----klsk 312 (1033)
T PLN03142 244 --VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA----LKRFSWRYIIIDEAHRIKNENS-----LLSK 312 (1033)
T ss_pred --CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH----hccCCCCEEEEcCccccCCHHH-----HHHH
Confidence 4678888886543211 123458999999876432211 1112468999999999965331 1121
Q ss_pred HHHHHhhcCCCceEEEeccCCCC--hHHH------------------HHHhccCCCc--------eEe-cCC--------
Q 000114 1491 MRYIASQVENKIRIVALSTSLAN--AKDL------------------GEWIGATSHG--------LFN-FPP-------- 1533 (2158)
Q Consensus 1491 l~~i~~~~~~~~riV~lSATl~n--~~dl------------------~~wl~~~~~~--------i~~-f~~-------- 1533 (2158)
....+... ..++||+|+-. ..++ ..|+...... +.. ..|
T Consensus 313 ---alr~L~a~-~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~Ks 388 (1033)
T PLN03142 313 ---TMRLFSTN-YRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKS 388 (1033)
T ss_pred ---HHHHhhcC-cEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHH
Confidence 11122333 34788888632 3333 2232211000 000 000
Q ss_pred C---CcccccEEEEecccccchHHH-----HH----hc----Ch-HHHHHHH----------------------------
Q 000114 1534 G---VRPVPLEIHIQGVDITNFEAR-----MQ----AM----TK-PTFTAIV---------------------------- 1568 (2158)
Q Consensus 1534 ~---~rpv~l~~~i~~~~~~~~~~~-----~~----~~----~k-~~~~~i~---------------------------- 1568 (2158)
. .-|...+ .+..+........ +. .+ .. .....+.
T Consensus 389 dV~~~LPpK~e-~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~li 467 (1033)
T PLN03142 389 DVEKGLPPKKE-TILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLV 467 (1033)
T ss_pred HHhhhCCCcee-EEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHh
Confidence 0 0010111 1111111100000 00 00 00 0000000
Q ss_pred --------------HhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcc
Q 000114 1569 --------------QHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (2158)
Q Consensus 1569 --------------~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (2158)
.....+.++|||+...... +.+.+. + ...++
T Consensus 468 e~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~L---------------------------------diLed~-L-~~~g~ 512 (1033)
T PLN03142 468 ENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLL---------------------------------DILEDY-L-MYRGY 512 (1033)
T ss_pred hhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHH---------------------------------HHHHHH-H-HHcCC
Confidence 0001222333333322211 112111 1 12356
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcC---CceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCC
Q 000114 1635 GVGYLHEGLNKTDQEVVSALFEAG---KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHAS 1711 (2158)
Q Consensus 1635 gv~~~H~~l~~~dR~~v~~~F~~g---~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaG 1711 (2158)
++..+||+++..+|..+++.|.+. ..-+|++|.+.+.|||+....+|| +++.+.++....|++|||.
T Consensus 513 ~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VI----------iyD~dWNP~~d~QAidRaH 582 (1033)
T PLN03142 513 QYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVI----------LYDSDWNPQVDLQAQDRAH 582 (1033)
T ss_pred cEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEE----------EeCCCCChHHHHHHHHHhh
Confidence 788999999999999999999753 346799999999999999888887 4567788999999999999
Q ss_pred CCCCCCceEEEEEecCCh
Q 000114 1712 RPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1712 R~g~d~~G~~iil~~~~~ 1729 (2158)
|.|..+.-.++.|+....
T Consensus 583 RIGQkk~V~VyRLIt~gT 600 (1033)
T PLN03142 583 RIGQKKEVQVFRFCTEYT 600 (1033)
T ss_pred hcCCCceEEEEEEEeCCc
Confidence 999777666776766653
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.5e-13 Score=180.25 Aligned_cols=83 Identities=20% Similarity=0.333 Sum_probs=63.7
Q ss_pred CCCCCCCHHHHH---HHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000114 491 KGMTQLNRVQSR---VYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2158)
Q Consensus 491 ~g~~~l~~iQ~~---~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~ 567 (2158)
+|| +.++-|.+ ++..++.++..+++.|+||+|||++|++|++... .+.++|+++||++|++|+.
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~------------~~~~vvI~t~T~~Lq~Ql~ 308 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS------------DQRQIIVSVPTKILQDQIM 308 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc------------CCCcEEEEeCcHHHHHHHH
Confidence 566 68999999 5555677778899999999999999999988753 1247999999999999995
Q ss_pred -HHHHhhcccCCcEEEEEeC
Q 000114 568 -GNLSNRLQMYDVKVRELSG 586 (2158)
Q Consensus 568 -~~~~~~~~~~gi~v~~l~G 586 (2158)
+.+..+.+.+++++..+.|
T Consensus 309 ~~~i~~l~~~~~~~~~~~kg 328 (820)
T PRK07246 309 AEEVKAIQEVFHIDCHSLKG 328 (820)
T ss_pred HHHHHHHHHhcCCcEEEEEC
Confidence 5555544445666655444
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.9e-14 Score=186.55 Aligned_cols=329 Identities=15% Similarity=0.061 Sum_probs=196.6
Q ss_pred ccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---
Q 000114 518 APTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ--- 594 (2158)
Q Consensus 518 APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~--- 594 (2158)
+.+|||||.+|+-.+-..+..+ ..+|+++|..+|+.|+.+.|+++|+ +..|..++++.+..++.
T Consensus 167 ~~~GSGKTevyl~~i~~~l~~G-----------k~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w 233 (665)
T PRK14873 167 ALPGEDWARRLAAAAAATLRAG-----------RGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRW 233 (665)
T ss_pred cCCCCcHHHHHHHHHHHHHHcC-----------CeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHH
Confidence 3369999999999888887754 2799999999999999999999885 24688899987765432
Q ss_pred ----hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccc--ccCChhhHHHHHHHHHHHHhhccccccEEEEcc
Q 000114 595 ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL--HDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (2158)
Q Consensus 595 ----~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l--~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSA 668 (2158)
.+...|+|+| ++.-+..+.++++|||||-|.- .+++++.+.. |-....+....++.+|+.||
T Consensus 234 ~~~~~G~~~IViGt---------RSAvFaP~~~LgLIIvdEEhd~sykq~~~p~yha---RdvA~~Ra~~~~~~lvLgSa 301 (665)
T PRK14873 234 LAVLRGQARVVVGT---------RSAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHA---REVALLRAHQHGCALLIGGH 301 (665)
T ss_pred HHHhCCCCcEEEEc---------ceeEEeccCCCCEEEEEcCCchhhcCCCCCCccH---HHHHHHHHHHcCCcEEEECC
Confidence 2467899999 4445577899999999999953 2345555432 21122233467899999999
Q ss_pred ccCChHHHHHHHhccccCceEEec---CCcccccceeEEEeeccC----ChhHHHHHhhHHHHHHHHHHhCCCeEEEEec
Q 000114 669 TLPNYEDVALFLRVNLEKGLFYFD---NSYRPVPLSQQYIGIQVK----KPLQRFQLMNDLCYEKVVAVAGKHQVLIFVH 741 (2158)
Q Consensus 669 Tlpn~~dv~~~l~~~~~~~~~~f~---~~~rpv~l~~~~~~~~~~----~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~ 741 (2158)
|. ..+ .|..+.... ..... ...+...-..++++.... +....-..+...+++.+.+....+|+|||+|
T Consensus 302 TP-Sle---s~~~~~~g~-~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~ln 376 (665)
T PRK14873 302 AR-TAE---AQALVESGW-AHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVP 376 (665)
T ss_pred CC-CHH---HHHHHhcCc-ceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEec
Confidence 94 433 333322111 11011 011111112233333210 0000001145566677777776559999999
Q ss_pred ChHHHHHHHHHHHHHhhcccccccccc---------cCchhHHHHHhhhhccCc--------------chhhhhccCCeE
Q 000114 742 SRKETAKTARAIRDTALENDTLGRFLK---------EDSVSREILQSHTDMVKS--------------NDLKDLLPYGFA 798 (2158)
Q Consensus 742 sr~~~~~~a~~L~~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~--------------~~l~~ll~~gv~ 798 (2158)
.|.-+..+...=|..-..+......+. ++..........+..|.. +.|..+++ ++
T Consensus 377 RrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP-~~- 454 (665)
T PRK14873 377 RRGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFP-GV- 454 (665)
T ss_pred CCCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCC-CC-
Confidence 998776655544443333222211111 111111101111222221 12333333 11
Q ss_pred EecCCCCHHHHHHHHHHHhCCCceEEEech----hhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCC
Q 000114 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTA----TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (2158)
Q Consensus 799 ~hHagl~~~~R~~v~~~F~~g~i~VLVaT~----tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (2158)
..-+.++..+++.|. ++.+|||+|. .++-|+ ..-+|++.+...+.+..+..+-....++|-+|||||.
T Consensus 455 ----~V~r~d~d~~l~~~~-~~~~IlVGTqgaepm~~g~~---~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~ 526 (665)
T PRK14873 455 ----PVVTSGGDQVVDTVD-AGPALVVATPGAEPRVEGGY---GAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPR 526 (665)
T ss_pred ----CEEEEChHHHHHhhc-cCCCEEEECCCCcccccCCc---eEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCC
Confidence 122234556888997 5999999998 676222 3334666666666666677777888999999999995
Q ss_pred CCCCccEEEEEcCC
Q 000114 875 QYDSYGEGIIITGH 888 (2158)
Q Consensus 875 g~d~~G~~iil~~~ 888 (2158)
. ..|+++|.+..
T Consensus 527 ~--~~G~V~iq~~p 538 (665)
T PRK14873 527 A--DGGQVVVVAES 538 (665)
T ss_pred C--CCCEEEEEeCC
Confidence 4 66999998633
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.6e-13 Score=175.89 Aligned_cols=124 Identities=18% Similarity=0.217 Sum_probs=100.6
Q ss_pred HHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecC
Q 000114 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (2158)
Q Consensus 1562 ~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~ 1641 (2158)
.....+......+.++||||+|++.|+.++..|.. .+..+.++||
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~-----------------------------------~gi~~~~~h~ 478 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKE-----------------------------------LGIKVRYLHS 478 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhh-----------------------------------cceeEEEEEC
Confidence 34445555556788999999999999999866632 2345789999
Q ss_pred CCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEE
Q 000114 1642 GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1721 (2158)
Q Consensus 1642 ~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~ 1721 (2158)
+++..+|..+++.|+.|.+.|||||+.+++|+|+|.+.+|| .++.. ....|.+..+|+||+||+||. ..|.|
T Consensus 479 ~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVi----i~d~e-ifG~~~~~~~yiqr~GR~gR~---~~G~~ 550 (652)
T PRK05298 479 DIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVA----ILDAD-KEGFLRSERSLIQTIGRAARN---VNGKV 550 (652)
T ss_pred CCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEE----EeCCc-ccccCCCHHHHHHHhccccCC---CCCEE
Confidence 99999999999999999999999999999999999988776 23322 233556889999999999994 58999
Q ss_pred EEEecCC
Q 000114 1722 VILCHAP 1728 (2158)
Q Consensus 1722 iil~~~~ 1728 (2158)
++++...
T Consensus 551 i~~~~~~ 557 (652)
T PRK05298 551 ILYADKI 557 (652)
T ss_pred EEEecCC
Confidence 9999854
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.6e-13 Score=174.23 Aligned_cols=115 Identities=19% Similarity=0.269 Sum_probs=96.0
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHH
Q 000114 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2158)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~ 811 (2158)
.+.++||||+|++.++.++..|.+.++. +.+.||+|+..+|..
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~-------------------------------------~~~lh~~~~~~eR~~ 483 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIK-------------------------------------VRYLHSEIDTLERVE 483 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccc-------------------------------------eeeeeCCCCHHHHHH
Confidence 3679999999999999999999876532 456699999999999
Q ss_pred HHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcH
Q 000114 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2158)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~ 891 (2158)
+++.|+.|.++|||||+.+++|+|+|++.+||. +|....+ .+-+..+|+||+|||||. ..|.++++++..+.
T Consensus 484 ~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi----~DadifG-~p~~~~~~iqriGRagR~---~~G~vi~~~~~~~~ 555 (655)
T TIGR00631 484 IIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI----LDADKEG-FLRSERSLIQTIGRAARN---VNGKVIMYADKITD 555 (655)
T ss_pred HHHHHhcCCceEEEEcChhcCCeeeCCCcEEEE----eCccccc-CCCCHHHHHHHhcCCCCC---CCCEEEEEEcCCCH
Confidence 999999999999999999999999999998887 4422110 112778999999999996 46999999887554
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.8e-12 Score=176.69 Aligned_cols=347 Identities=15% Similarity=0.195 Sum_probs=198.8
Q ss_pred CCCHHHHHH---HHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH-HHHHHHhcC
Q 000114 1341 HFNPIQTQV---FTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY-RDWEIKFGQ 1416 (2158)
Q Consensus 1341 ~~~~iQ~q~---~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~-~~~~~~f~~ 1416 (2158)
++++.|.+. +...+..+..+++.|+||+|||++|++|++... .+. ++|+++||++|+.|+. +++. .+++
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----~~~--~vvI~t~T~~Lq~Ql~~~~i~-~l~~ 317 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----DQR--QIIVSVPTKILQDQIMAEEVK-AIQE 317 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----CCC--cEEEEeCcHHHHHHHHHHHHH-HHHH
Confidence 689999984 444456778899999999999999999988643 123 8999999999999995 5555 5665
Q ss_pred CCCcEEEEEcCCcch------------------------------------h----------------------------
Q 000114 1417 GLGMRVVELTGETAM------------------------------------D---------------------------- 1432 (2158)
Q Consensus 1417 ~~g~~v~~ltG~~~~------------------------------------~---------------------------- 1432 (2158)
..++++..+.|.... |
T Consensus 318 ~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~cp 397 (820)
T PRK07246 318 VFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSSL 397 (820)
T ss_pred hcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCCC
Confidence 556665544331100 0
Q ss_pred ----------hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC----CCCh--HHHHHH-------
Q 000114 1433 ----------LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ----GGPV--LEVIVS------- 1489 (2158)
Q Consensus 1433 ----------~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~----~g~~--~e~~is------- 1489 (2158)
.+....++|||+.-.-+...+.. ...+...+.+||||||.+.+. .+.. +..+..
T Consensus 398 ~~~~cf~~~ar~~a~~AdivItNHall~~~~~~---~~~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 474 (820)
T PRK07246 398 FYDYDFWKRSYEKAKTARLLITNHAYFLTRVQD---DKDFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALS 474 (820)
T ss_pred cchhhHHHHHHHHHHhCCEEEEchHHHHHHHhh---ccCCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHH
Confidence 00123458888887655443322 223567899999999988531 1111 000000
Q ss_pred ---------------------------------------H----HHHHH-----------hh------------------
Q 000114 1490 ---------------------------------------R----MRYIA-----------SQ------------------ 1497 (2158)
Q Consensus 1490 ---------------------------------------r----l~~i~-----------~~------------------ 1497 (2158)
+ +..+. ..
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~ 554 (820)
T PRK07246 475 GPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVT 554 (820)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCccee
Confidence 0 00000 00
Q ss_pred ---------------cCCCceEEEeccCCC--ChHHHHHHhccCCCceEecCCCCcccccEEEEe-cccccchHHHHHhc
Q 000114 1498 ---------------VENKIRIVALSTSLA--NAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQ-GVDITNFEARMQAM 1559 (2158)
Q Consensus 1498 ---------------~~~~~riV~lSATl~--n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~-~~~~~~~~~~~~~~ 1559 (2158)
++....+|++||||+ +.-++.+.+|............+.... .+.+. ..+....... ...
T Consensus 555 ~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~-~~~i~~~~p~~~~~~~-~~~ 632 (820)
T PRK07246 555 YLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQ-LVVVDQDMPLVTETSD-EVY 632 (820)
T ss_pred EEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCcHHHHcCCCccceecCCCChHHcc-EEEeCCCCCCCCCCCh-HHH
Confidence 011246789999995 222477778865322222211111111 11111 1111110000 011
Q ss_pred ChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEe
Q 000114 1560 TKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYL 1639 (2158)
Q Consensus 1560 ~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~ 1639 (2158)
.......+......+++++|+++|.+..+.++..|... ...+ +.
T Consensus 633 ~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~-----------------------------------~~~~-l~ 676 (820)
T PRK07246 633 AEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQW-----------------------------------QVSH-LA 676 (820)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhc-----------------------------------CCcE-EE
Confidence 11222222222245789999999999988887655210 1112 22
Q ss_pred cCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCC---ccEEEEecceeecCC---------------CCcCcCCC--
Q 000114 1640 HEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLT---AHLVVVMGTQYYDGQ---------------ENAHTDYP-- 1699 (2158)
Q Consensus 1640 H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp---~~~vVI~gt~~yd~~---------------~~~~~~~s-- 1699 (2158)
.|.-. .|..+.+.|+++.-.||++|..+..|||+| ...+||.+-++-.+. .+.+..|+
T Consensus 677 Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP 754 (820)
T PRK07246 677 QEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLP 754 (820)
T ss_pred eCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHH
Confidence 23111 245688899999899999999999999997 345667665544331 11222333
Q ss_pred --HHHHHHhhccCCCCCCCCceEEEEEecCC-hHHHHHHHhh
Q 000114 1700 --VTDLLQMMGHASRPLLDNSGKCVILCHAP-RKEYYKKFLY 1738 (2158)
Q Consensus 1700 --~~~~lQr~GRaGR~g~d~~G~~iil~~~~-~~~~~~k~l~ 1738 (2158)
+..+.|-+||.-|.. +..|.++++-..- .+.|-+.|+.
T Consensus 755 ~A~iklkQg~GRLIRs~-~D~Gvv~ilD~R~~~k~Yg~~~l~ 795 (820)
T PRK07246 755 MTILRLKQAIGRTMRRE-DQKSAVLILDRRILTKSYGKQILA 795 (820)
T ss_pred HHHHHHHHHhcccccCC-CCcEEEEEECCcccccHHHHHHHH
Confidence 566889999999976 5678766665443 3444455554
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=8e-13 Score=173.20 Aligned_cols=133 Identities=20% Similarity=0.216 Sum_probs=99.4
Q ss_pred hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHH
Q 000114 731 AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810 (2158)
Q Consensus 731 ~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~ 810 (2158)
..+.|+||||+|+..++.++..|...++... .+|+ .+.+|+
T Consensus 596 ~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~-------------------------------------vLna--kq~~RE 636 (1025)
T PRK12900 596 KKGQPVLVGTASVEVSETLSRMLRAKRIAHN-------------------------------------VLNA--KQHDRE 636 (1025)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHcCCCce-------------------------------------eecC--CHHHhH
Confidence 3478999999999999999999998765433 3376 578999
Q ss_pred HHHHHHhCCCceEEEechhhhhccCCC---ceE-----EEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEE
Q 000114 811 LVEDLFGDGHVQVLVSTATLAWGVNLP---AHT-----VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (2158)
Q Consensus 811 ~v~~~F~~g~i~VLVaT~tla~GVdlP---~v~-----vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (2158)
..+..|+.+...|+|||++++||+|++ .|. +||. +..+. |...|.|++|||||.| ..|.+
T Consensus 637 a~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIg----terhe------s~Rid~Ql~GRtGRqG--dpGsS 704 (1025)
T PRK12900 637 AEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILG----SERHE------SRRIDRQLRGRAGRQG--DPGES 704 (1025)
T ss_pred HHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeC----CCCCc------hHHHHHHHhhhhhcCC--CCcce
Confidence 999999999999999999999999999 442 3465 22222 5667999999999987 77999
Q ss_pred EEEcCCCcHH-------HHHHhh-----cCCCcccchhhHhhHH
Q 000114 883 IIITGHSELR-------YYLSLM-----NQQLPIESQFVSKLAD 914 (2158)
Q Consensus 883 iil~~~~~~~-------~y~~ll-----~~~~pieS~l~~~l~d 914 (2158)
+.+++..+.- .+.+++ ....||++.+..+..+
T Consensus 705 ~ffvSleD~Lmr~f~~~~i~~~~~~~~~~e~e~I~~~~i~k~ie 748 (1025)
T PRK12900 705 VFYVSLEDELMRLFGSDRVISVMDRLGHEEGDVIEHSMITKSIE 748 (1025)
T ss_pred EEEechhHHHHHhhCcHHHHHHHHHcCCCCCCcccchHHHHHHH
Confidence 9998875421 122222 2345677776655444
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.2e-12 Score=175.45 Aligned_cols=135 Identities=20% Similarity=0.338 Sum_probs=94.0
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHH
Q 000114 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2158)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v 812 (2158)
++++|||++|.+..+.++..|....... ++.+.--|++...|..+
T Consensus 752 ~g~~LVLFtSy~~l~~v~~~l~~~~~~~-----------------------------------~~~ll~Qg~~~~~r~~l 796 (928)
T PRK08074 752 KGRMLVLFTSYEMLKKTYYNLKNEEELE-----------------------------------GYVLLAQGVSSGSRARL 796 (928)
T ss_pred CCCEEEEECCHHHHHHHHHHHhhccccc-----------------------------------CceEEecCCCCCCHHHH
Confidence 6789999999999999998887532110 11111224444568889
Q ss_pred HHHHhCCCceEEEechhhhhccCCCce--EEEEecccccCCCCC----------------ccccC----CHHHHHHhhcc
Q 000114 813 EDLFGDGHVQVLVSTATLAWGVNLPAH--TVIIKGTQIYNPEKG----------------AWTEL----SPLDIMQMLGR 870 (2158)
Q Consensus 813 ~~~F~~g~i~VLVaT~tla~GVdlP~v--~vVI~~~~~yd~~~g----------------~~~~~----s~~~~~Qr~GR 870 (2158)
.+.|+.+.-.||++|..+..|||+|+- ..||-...||.++.. .|.++ ....+.|-+||
T Consensus 797 ~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GR 876 (928)
T PRK08074 797 TKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGR 876 (928)
T ss_pred HHHHHhcCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhh
Confidence 999999988999999999999999985 556666778865542 23343 35677999999
Q ss_pred cCCCCCCCccEEEEEcCCCcHHHHHHhhcCCCc
Q 000114 871 AGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (2158)
Q Consensus 871 AGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~p 903 (2158)
.=|...| .|..+++-..-....|-+.+-..+|
T Consensus 877 lIRs~~D-~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 877 LIRTETD-RGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred hcccCCc-eEEEEEecCccccchHHHHHHHhCC
Confidence 9997644 6776666555444556554444445
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.6e-13 Score=154.68 Aligned_cols=169 Identities=22% Similarity=0.284 Sum_probs=123.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
++..++++|.+++..++++..++++++|||+|||.++..++++.+... ... +++|++|+++++.|..+.+...+...
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~-~~~--~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG-KGK--RVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc-CCC--cEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 367899999999999987636799999999999999999999888762 233 89999999999999999998655432
Q ss_pred CCcEEEEEcCCcch-hhh-cccCC-cEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCCChHHHHHHHHHH
Q 000114 1418 LGMRVVELTGETAM-DLK-LLEKG-QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRY 1493 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~-~~~-~l~~~-~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g~~~e~~isrl~~ 1493 (2158)
.+.....+.+.... ... ..... +++++|++.+........ .....++++|+||+|.+.. ... ..+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~--~~~~~~~~iIiDE~h~~~~~~~~-------~~~~~ 152 (201)
T smart00487 82 GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL--LELSNVDLVILDEAHRLLDGGFG-------DQLEK 152 (201)
T ss_pred CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC--cCHhHCCEEEEECHHHHhcCCcH-------HHHHH
Confidence 22455555554422 222 22334 999999999888776633 3567889999999999975 222 22223
Q ss_pred HHhhcCCCceEEEeccCCCChHHHH
Q 000114 1494 IASQVENKIRIVALSTSLANAKDLG 1518 (2158)
Q Consensus 1494 i~~~~~~~~riV~lSATl~n~~dl~ 1518 (2158)
+........+++++|||+++..+..
T Consensus 153 ~~~~~~~~~~~v~~saT~~~~~~~~ 177 (201)
T smart00487 153 LLKLLPKNVQLLLLSATPPEEIENL 177 (201)
T ss_pred HHHhCCccceEEEEecCCchhHHHH
Confidence 3333356889999999998644333
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.8e-13 Score=155.59 Aligned_cols=164 Identities=27% Similarity=0.355 Sum_probs=121.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
++.+++++|.+++..++....++++++|||+|||.++..++++.+.... ..+++|++|+++++.|+...+.
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~---------~~~~l~~~p~~~~~~~~~~~~~ 75 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK---------GKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC---------CCcEEEEeCCHHHHHHHHHHHH
Confidence 5678999999999998876467999999999999999999998876542 2479999999999999999999
Q ss_pred hhcccCC-cEEEEEeCCCccCH--hhhccc-cEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CChhhHHHH
Q 000114 572 NRLQMYD-VKVRELSGDQTLTR--QQIEET-QIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESI 646 (2158)
Q Consensus 572 ~~~~~~g-i~v~~l~Gd~~~~~--~~~~~~-~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~i 646 (2158)
..+.... .....+.|...... ...... +++++|++.+........ .....++++|+||+|.+.. .+...+..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~--~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 153 (201)
T smart00487 76 KLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL--LELSNVDLVILDEAHRLLDGGFGDQLEKL 153 (201)
T ss_pred HHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC--cCHhHCCEEEEECHHHHhcCCcHHHHHHH
Confidence 8776544 34444544432111 112233 999999998754444432 3456789999999999876 555555544
Q ss_pred HHHHHHHHhhccccccEEEEccccCCh
Q 000114 647 VARTVRQIETTKEHIRLVGLSATLPNY 673 (2158)
Q Consensus 647 v~r~~~~~~~~~~~~riv~lSATlpn~ 673 (2158)
+..+ ....+++++|||+++.
T Consensus 154 ~~~~-------~~~~~~v~~saT~~~~ 173 (201)
T smart00487 154 LKLL-------PKNVQLLLLSATPPEE 173 (201)
T ss_pred HHhC-------CccceEEEEecCCchh
Confidence 4322 5678999999998743
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.2e-12 Score=153.98 Aligned_cols=170 Identities=22% Similarity=0.302 Sum_probs=120.0
Q ss_pred cccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHH-HhCCCeEEE
Q 000114 660 HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVA-VAGKHQVLI 738 (2158)
Q Consensus 660 ~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~-~~~~~~vLV 738 (2158)
..|+|..|||..+++ +..- +-.+...-.||.-+---.+.+.... .+.. ++ +..+.. ...+.+++|
T Consensus 386 ~~q~i~VSATPg~~E-~e~s-------~~~vveQiIRPTGLlDP~ievRp~~--~Qvd---DL-~~EI~~r~~~~eRvLV 451 (663)
T COG0556 386 IPQTIYVSATPGDYE-LEQS-------GGNVVEQIIRPTGLLDPEIEVRPTK--GQVD---DL-LSEIRKRVAKNERVLV 451 (663)
T ss_pred cCCEEEEECCCChHH-HHhc-------cCceeEEeecCCCCCCCceeeecCC--CcHH---HH-HHHHHHHHhcCCeEEE
Confidence 569999999976543 2111 1112233445654433333232221 1222 22 223333 334789999
Q ss_pred EecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhC
Q 000114 739 FVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD 818 (2158)
Q Consensus 739 Fv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~ 818 (2158)
-+-|++-|+.+..+|.+.|.. +.+.|++...-+|..++..++.
T Consensus 452 TtLTKkmAEdLT~Yl~e~gik-------------------------------------v~YlHSdidTlER~eIirdLR~ 494 (663)
T COG0556 452 TTLTKKMAEDLTEYLKELGIK-------------------------------------VRYLHSDIDTLERVEIIRDLRL 494 (663)
T ss_pred EeehHHHHHHHHHHHHhcCce-------------------------------------EEeeeccchHHHHHHHHHHHhc
Confidence 999999999999999987643 6778999999999999999999
Q ss_pred CCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCC
Q 000114 819 GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2158)
Q Consensus 819 g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2158)
|.++|||.-+.|-.|+|+|.|.+|.- .|..+-++ --|-.+++|-+|||.|. -.|++|+....
T Consensus 495 G~~DvLVGINLLREGLDiPEVsLVAI----lDADKeGF-LRse~SLIQtIGRAARN---~~GkvIlYAD~ 556 (663)
T COG0556 495 GEFDVLVGINLLREGLDLPEVSLVAI----LDADKEGF-LRSERSLIQTIGRAARN---VNGKVILYADK 556 (663)
T ss_pred CCccEEEeehhhhccCCCcceeEEEE----eecCcccc-ccccchHHHHHHHHhhc---cCCeEEEEchh
Confidence 99999999999999999999998765 55443221 12777899999999995 46999888765
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-12 Score=165.83 Aligned_cols=281 Identities=21% Similarity=0.264 Sum_probs=172.5
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
|+ .|...|+-....++.+.. .-+.||||.|||.-.++..+-...+ +.+++||+||..|+.|.++++.
T Consensus 80 G~-~~ws~QR~WakR~~rg~S-FaiiAPTGvGKTTfg~~~sl~~a~k-----------gkr~yii~PT~~Lv~Q~~~kl~ 146 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLVRGKS-FAIIAPTGVGKTTFGLLMSLYLAKK-----------GKRVYIIVPTTTLVRQVYERLK 146 (1187)
T ss_pred CC-CchHHHHHHHHHHHcCCc-eEEEcCCCCchhHHHHHHHHHHHhc-----------CCeEEEEecCHHHHHHHHHHHH
Confidence 44 899999999999888755 9999999999997666555544333 3489999999999999999999
Q ss_pred hhcccCC-cEEEE-EeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CC--
Q 000114 572 NRLQMYD-VKVRE-LSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NR-- 639 (2158)
Q Consensus 572 ~~~~~~g-i~v~~-l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~r-- 639 (2158)
++....| ..+.. ++|......+. ..+.+|+|+|.. .+.++...... -++++|++|.+|.++- .+
T Consensus 147 ~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~---FL~k~~e~L~~-~kFdfifVDDVDA~LkaskNv 222 (1187)
T COG1110 147 KFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ---FLSKRFEELSK-LKFDFIFVDDVDAILKASKNV 222 (1187)
T ss_pred HHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH---HHHhhHHHhcc-cCCCEEEEccHHHHHhccccH
Confidence 8775444 33322 66665443321 247899999987 33333321111 3579999999996642 11
Q ss_pred ----------hhhHHHH--HHHHHHHHh---------------------hccccccEEEEccccCChHH----HHHHHhc
Q 000114 640 ----------GPVLESI--VARTVRQIE---------------------TTKEHIRLVGLSATLPNYED----VALFLRV 682 (2158)
Q Consensus 640 ----------g~~le~i--v~r~~~~~~---------------------~~~~~~riv~lSATlpn~~d----v~~~l~~ 682 (2158)
...++.. +.++.+... .....-++|..|||.....+ +...++.
T Consensus 223 DriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF 302 (1187)
T COG1110 223 DRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF 302 (1187)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC
Confidence 1111100 011111100 11234678999999764332 2333333
Q ss_pred cccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecC---hHHHHHHHHHHHHHhhc
Q 000114 683 NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHS---RKETAKTARAIRDTALE 759 (2158)
Q Consensus 683 ~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~s---r~~~~~~a~~L~~~~~~ 759 (2158)
. .......+...+-.........+ +.+ +.+.. +...||||+. +..++.+++.|+..|++
T Consensus 303 e---------vG~~~~~LRNIvD~y~~~~~~e~-------~~e-lvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~ 364 (1187)
T COG1110 303 E---------VGSGGEGLRNIVDIYVESESLEK-------VVE-LVKKL-GDGGLIFVPIDYGREKAEELAEYLRSHGIN 364 (1187)
T ss_pred c---------cCccchhhhheeeeeccCccHHH-------HHH-HHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhcCce
Confidence 2 22111222211111111111111 111 22222 4568999999 88899999999988765
Q ss_pred ccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEech----hhhhccC
Q 000114 760 NDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTA----TLAWGVN 835 (2158)
Q Consensus 760 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~----tla~GVd 835 (2158)
.. ..|++ +...++.|..|+++|||+.+ ++.||+|
T Consensus 365 a~-------------------------------------~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlD 402 (1187)
T COG1110 365 AE-------------------------------------LIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLD 402 (1187)
T ss_pred EE-------------------------------------Eeecc-----chhhhhhhccCceeEEEEecccccceeecCC
Confidence 43 23552 36788999999999999864 7999999
Q ss_pred CCce-EEEEecccccCCCC
Q 000114 836 LPAH-TVIIKGTQIYNPEK 853 (2158)
Q Consensus 836 lP~v-~vVI~~~~~yd~~~ 853 (2158)
+|.. +++| .|..|+
T Consensus 403 LP~rirYaI----F~GvPk 417 (1187)
T COG1110 403 LPHRIRYAV----FYGVPK 417 (1187)
T ss_pred chhheeEEE----EecCCc
Confidence 9974 4444 366664
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.1e-12 Score=160.59 Aligned_cols=288 Identities=21% Similarity=0.219 Sum_probs=173.9
Q ss_pred hHHHHHhcC--CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH
Q 000114 1330 PLYEALYQG--FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2158)
Q Consensus 1330 ~~~~~l~~g--f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~ 1407 (2158)
..++++|.. ...|...|+-....++. +++.-+.||||.|||...++..+-...+ ++ +++||+||..|+.|.+
T Consensus 69 e~~~~fF~k~~G~~~ws~QR~WakR~~r-g~SFaiiAPTGvGKTTfg~~~sl~~a~k---gk--r~yii~PT~~Lv~Q~~ 142 (1187)
T COG1110 69 EEFEEFFKKATGFRPWSAQRVWAKRLVR-GKSFAIIAPTGVGKTTFGLLMSLYLAKK---GK--RVYIIVPTTTLVRQVY 142 (1187)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHc-CCceEEEcCCCCchhHHHHHHHHHHHhc---CC--eEEEEecCHHHHHHHH
Confidence 345666762 23889999999999988 4559999999999998776655533332 44 9999999999999999
Q ss_pred HHHHHHhcCCCC---cEEEEEcCCcchh-----hhcccC--CcEEEeCHHHHHHHHhhhhccccccceeEEEeccccccc
Q 000114 1408 RDWEIKFGQGLG---MRVVELTGETAMD-----LKLLEK--GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1408 ~~~~~~f~~~~g---~~v~~ltG~~~~~-----~~~l~~--~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
+++. .|+...| ..++ ++|..+.. .+.+.+ .||+|+|..-+..-... ..--+++++++|++|.++
T Consensus 143 ~kl~-~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~----L~~~kFdfifVDDVDA~L 216 (1187)
T COG1110 143 ERLK-KFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE----LSKLKFDFIFVDDVDAIL 216 (1187)
T ss_pred HHHH-HHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH----hcccCCCEEEEccHHHHH
Confidence 9999 5654323 3344 77765543 234444 49999997643222211 111368999999999765
Q ss_pred CCC----------CChHHHH------------------HHHHHHHHh--------hcCCCceEEEeccCCCChH----HH
Q 000114 1478 GQG----------GPVLEVI------------------VSRMRYIAS--------QVENKIRIVALSTSLANAK----DL 1517 (2158)
Q Consensus 1478 ~~~----------g~~~e~~------------------isrl~~i~~--------~~~~~~riV~lSATl~n~~----dl 1517 (2158)
... |-.=|.+ ..+.+.+.. +-.+..++|..|||..... -+
T Consensus 217 kaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~Lf 296 (1187)
T COG1110 217 KASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLF 296 (1187)
T ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHH
Confidence 311 1111111 011111111 1124578999999985532 23
Q ss_pred HHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecC---hHHHHHHHHHH
Q 000114 1518 GEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPS---RKYVRLTAVDL 1594 (2158)
Q Consensus 1518 ~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~s---r~~~~~~a~~L 1594 (2158)
.+.|| |.+.....-+.-.+..+.... .......+...+ +...||||+. ++.++.++..|
T Consensus 297 ReLlg--------FevG~~~~~LRNIvD~y~~~~--------~~e~~~elvk~l--G~GgLIfV~~d~G~e~aeel~e~L 358 (1187)
T COG1110 297 RELLG--------FEVGSGGEGLRNIVDIYVESE--------SLEKVVELVKKL--GDGGLIFVPIDYGREKAEELAEYL 358 (1187)
T ss_pred HHHhC--------CccCccchhhhheeeeeccCc--------cHHHHHHHHHHh--CCCeEEEEEcHHhHHHHHHHHHHH
Confidence 33343 332222211211111111111 111122233332 4468999999 66666666554
Q ss_pred HhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecC----ccc
Q 000114 1595 MTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSS----SMC 1670 (2158)
Q Consensus 1595 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~----~la 1670 (2158)
.. .+..+..+|++ ++..++.|..|+++|||+.. ++.
T Consensus 359 r~-----------------------------------~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lV 398 (1187)
T COG1110 359 RS-----------------------------------HGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLV 398 (1187)
T ss_pred Hh-----------------------------------cCceEEEeecc-----chhhhhhhccCceeEEEEeccccccee
Confidence 21 34557778873 36789999999999999964 599
Q ss_pred cccCCCc--cEEEEeccee
Q 000114 1671 WGVPLTA--HLVVVMGTQY 1687 (2158)
Q Consensus 1671 ~Gvdlp~--~~vVI~gt~~ 1687 (2158)
||+|+|. ..+|..|.+.
T Consensus 399 RGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 399 RGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred ecCCchhheeEEEEecCCc
Confidence 9999993 4456677773
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.1e-12 Score=150.20 Aligned_cols=125 Identities=19% Similarity=0.236 Sum_probs=101.4
Q ss_pred HHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecC
Q 000114 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE 1641 (2158)
Q Consensus 1562 ~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~ 1641 (2158)
..+..|......+.++||-+-|++.|+.+...|.. .+..+.++|+
T Consensus 434 DL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e-----------------------------------~gikv~YlHS 478 (663)
T COG0556 434 DLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKE-----------------------------------LGIKVRYLHS 478 (663)
T ss_pred HHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHh-----------------------------------cCceEEeeec
Confidence 45566666667889999999999999888866632 4566899999
Q ss_pred CCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEE
Q 000114 1642 GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKC 1721 (2158)
Q Consensus 1642 ~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~ 1721 (2158)
++..-+|..++...+.|..+|||.-+.+-.|+|+|.+.+|. ..|... -.+.-|-.+++|-+|||.| .-.|++
T Consensus 479 didTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVA----IlDADK-eGFLRse~SLIQtIGRAAR---N~~Gkv 550 (663)
T COG0556 479 DIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVA----ILDADK-EGFLRSERSLIQTIGRAAR---NVNGKV 550 (663)
T ss_pred cchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEE----EeecCc-cccccccchHHHHHHHHhh---ccCCeE
Confidence 99999999999999999999999999999999999887664 233332 2344578899999999999 468999
Q ss_pred EEEecCCh
Q 000114 1722 VILCHAPR 1729 (2158)
Q Consensus 1722 iil~~~~~ 1729 (2158)
+++.+.-.
T Consensus 551 IlYAD~iT 558 (663)
T COG0556 551 ILYADKIT 558 (663)
T ss_pred EEEchhhh
Confidence 98876643
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-11 Score=158.50 Aligned_cols=127 Identities=13% Similarity=0.071 Sum_probs=100.4
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.++++|--..-.++.| -++...||+|||+++.+|+......+ ..+-+++|+--||.+-++.+..++
T Consensus 78 r~ydvQlig~l~Ll~G---~VaEM~TGEGKTLvA~l~a~l~AL~G-----------~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 78 RPFDVQLLGALRLLAG---DVIEMATGEGKTLAGAIAAAGYALQG-----------RRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred CcchHHHHHHHHHhCC---CcccccCCCCHHHHHHHHHHHHHHcC-----------CCeEEEcCCHHHHHHHHHHHHHHH
Confidence 5788898888776655 37799999999999999988776653 368999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCH-hhhccccEEEcchhHH--HHHHhccC---CCccccccceEEeeccccc
Q 000114 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~-~~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~lIIiDEaH~l 635 (2158)
..+|++|+.++++.+... +..-.++|+++|..-+ |.|.-+.. +......+.+.||||+|.+
T Consensus 144 ~~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSi 210 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSV 210 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhh
Confidence 999999999999876543 3355899999999875 55443321 1223455789999999965
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.4e-11 Score=162.77 Aligned_cols=359 Identities=14% Similarity=0.080 Sum_probs=200.8
Q ss_pred EccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh-----cc-
Q 000114 1363 AAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK-----LL- 1436 (2158)
Q Consensus 1363 ~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~-----~l- 1436 (2158)
.+.+|||||.+|+-.+-..+.. ++ .+|+++|..+|+.|..++++++|+. ..|..++++.+...+ .+
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~---Gk--~vLvLvPEi~lt~q~~~rl~~~f~~---~~v~~lhS~l~~~~R~~~w~~~~ 237 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRA---GR--GALVVVPDQRDVDRLEAALRALLGA---GDVAVLSAGLGPADRYRRWLAVL 237 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHc---CC--eEEEEecchhhHHHHHHHHHHHcCC---CcEEEECCCCCHHHHHHHHHHHh
Confidence 3346999999997777766655 55 8999999999999999999998862 468889988765422 22
Q ss_pred -cCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccccc--CCCCChH---HHHHHHHHHHHhhcCCCceEEEeccC
Q 000114 1437 -EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG--GQGGPVL---EVIVSRMRYIASQVENKIRIVALSTS 1510 (2158)
Q Consensus 1437 -~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~--~~~g~~~---e~~isrl~~i~~~~~~~~riV~lSAT 1510 (2158)
...+|||+| +......+++++||||||-|--. +.+++.| +..+-|-+ ..++.+|+.|||
T Consensus 238 ~G~~~IViGt---------RSAvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~------~~~~~lvLgSaT 302 (665)
T PRK14873 238 RGQARVVVGT---------RSAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH------QHGCALLIGGHA 302 (665)
T ss_pred CCCCcEEEEc---------ceeEEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH------HcCCcEEEECCC
Confidence 234899999 44455678999999999999432 2344443 23333222 248899999999
Q ss_pred CCChHHHHHHhccCCCceEecCCCC----cccccEEEEecccccchH----HHHHhcChHHHHHHHHhHhcCCCEEEEec
Q 000114 1511 LANAKDLGEWIGATSHGLFNFPPGV----RPVPLEIHIQGVDITNFE----ARMQAMTKPTFTAIVQHAKNEKPALVFVP 1582 (2158)
Q Consensus 1511 l~n~~dl~~wl~~~~~~i~~f~~~~----rpv~l~~~i~~~~~~~~~----~~~~~~~k~~~~~i~~~~~~~~~~IVFv~ 1582 (2158)
.+ .+ .|..+............ ...| .+.+.+....... .....+....+..+.+.+..+ ++|||+|
T Consensus 303 PS-le---s~~~~~~g~~~~~~~~~~~~~~~~P-~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~ln 376 (665)
T PRK14873 303 RT-AE---AQALVESGWAHDLVAPRPVVRARAP-RVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVP 376 (665)
T ss_pred CC-HH---HHHHHhcCcceeeccccccccCCCC-eEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEec
Confidence 64 33 22222211111111110 1111 2333222110000 000125567788888887878 9999999
Q ss_pred ChHHHHHHHHHH------------------------HhhcccCCcccccccCCCcccchhh---HhhhhHHHHHHHhccc
Q 000114 1583 SRKYVRLTAVDL------------------------MTYSSMDGDQKSAFLLWPAEEVEPF---IDNIQEEMLKATLRHG 1635 (2158)
Q Consensus 1583 sr~~~~~~a~~L------------------------~~~~~~~~~~~~~~l~~~~~~l~~~---~~~i~d~~L~~~l~~g 1635 (2158)
.|-.+-.+.-.= |.+|.....+.. +.+|....+... .+++.++.-+.+-+..
T Consensus 377 RrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~-Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~ 455 (665)
T PRK14873 377 RRGYVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWR-CPRCGSDRLRAVVVGARRTAEELGRAFPGVP 455 (665)
T ss_pred CCCCCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCcc-CCCCcCCcceeeeccHHHHHHHHHHHCCCCC
Confidence 875432221111 222222111111 222222222221 3344433333333344
Q ss_pred EEEecCCCCHHHHHHHHHHHHcCCceEEEecC----ccccccCCCccEEEEecce--eecCCCCcCcCCCHHHHHHhhcc
Q 000114 1636 VGYLHEGLNKTDQEVVSALFEAGKIKVCVMSS----SMCWGVPLTAHLVVVMGTQ--YYDGQENAHTDYPVTDLLQMMGH 1709 (2158)
Q Consensus 1636 v~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~----~la~Gvdlp~~~vVI~gt~--~yd~~~~~~~~~s~~~~lQr~GR 1709 (2158)
|... ++..+++.|. ++.+|||+|. .++ | ++ ..|+|.+.. .+.+.. +-..-...-+.|-+||
T Consensus 456 V~r~-------d~d~~l~~~~-~~~~IlVGTqgaepm~~-g-~~--~lV~ildaD~~L~~pDf-RA~Er~~qll~qvagr 522 (665)
T PRK14873 456 VVTS-------GGDQVVDTVD-AGPALVVATPGAEPRVE-G-GY--GAALLLDAWALLGRQDL-RAAEDTLRRWMAAAAL 522 (665)
T ss_pred EEEE-------ChHHHHHhhc-cCCCEEEECCCCccccc-C-Cc--eEEEEEcchhhhcCCCc-ChHHHHHHHHHHHHHh
Confidence 4432 2345888896 5999999999 555 3 22 233343322 111110 1111136677899999
Q ss_pred CCCCCCCCceEEEEEecCChHHHHHHHhhCCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCC
Q 000114 1710 ASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNY 1789 (2158)
Q Consensus 1710 aGR~g~d~~G~~iil~~~~~~~~~~k~l~~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~ 1789 (2158)
|||. +..|.++|.+ .++...++.+.. .|--.|.....-.|+....|.|
T Consensus 523 agr~--~~~G~V~iq~-~p~~~~~~~l~~-----------------------------~d~~~F~~~EL~~R~~~~~PPf 570 (665)
T PRK14873 523 VRPR--ADGGQVVVVA-ESSLPTVQALIR-----------------------------WDPVGHAERELAERAEVGFPPA 570 (665)
T ss_pred hcCC--CCCCEEEEEe-CCCCHHHHHHHh-----------------------------CCHHHHHHHHHHHHHHcCccCc
Confidence 9996 4789999886 433222222211 1222345555557888888999
Q ss_pred ccCCCCC
Q 000114 1790 YNLQGVS 1796 (2158)
Q Consensus 1790 Y~~~~~~ 1796 (2158)
..+..+.
T Consensus 571 ~~la~i~ 577 (665)
T PRK14873 571 VRMAAVD 577 (665)
T ss_pred eeeEEEE
Confidence 8876553
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.6e-11 Score=152.35 Aligned_cols=128 Identities=18% Similarity=0.117 Sum_probs=95.3
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.++++|--..-.+++| + |+...||+|||+++.+|++..... +. .+.+++|+.-||.+-++.+...|. .+|+
T Consensus 78 r~ydvQlig~l~Ll~G-~--VaEM~TGEGKTLvA~l~a~l~AL~---G~--~VhvvT~NdyLA~RDae~m~~ly~-~LGL 148 (764)
T PRK12326 78 RPFDVQLLGALRLLAG-D--VIEMATGEGKTLAGAIAAAGYALQ---GR--RVHVITVNDYLARRDAEWMGPLYE-ALGL 148 (764)
T ss_pred CcchHHHHHHHHHhCC-C--cccccCCCCHHHHHHHHHHHHHHc---CC--CeEEEcCCHHHHHHHHHHHHHHHH-hcCC
Confidence 5677777777666653 3 679999999999999999866655 44 688999999999999998885554 4699
Q ss_pred EEEEEcCCcchh-hhcccCCcEEEeCHHHHH-HHHhhhh----ccccccceeEEEeccccccc
Q 000114 1421 RVVELTGETAMD-LKLLEKGQIIISTPEKWD-ALSRRWK----QRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1421 ~v~~ltG~~~~~-~~~l~~~~IIV~TPe~l~-~l~r~~~----~~~~l~~v~llIiDEaH~l~ 1477 (2158)
+|+.++++.+.. .+..-.++|+++|..-+- +.+|-.. .....+.+.+.||||+|.++
T Consensus 149 svg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 149 TVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred EEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 999999987765 344557899999988752 2333211 12234568899999999654
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-11 Score=162.36 Aligned_cols=132 Identities=15% Similarity=0.081 Sum_probs=99.0
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
..+.|+||||+|+..++.++..|.. .+.....+|+ .+.+|...
T Consensus 596 ~~grpVLIft~Sve~sE~Ls~~L~~-----------------------------------~gI~h~vLna--kq~~REa~ 638 (1025)
T PRK12900 596 KKGQPVLVGTASVEVSETLSRMLRA-----------------------------------KRIAHNVLNA--KQHDREAE 638 (1025)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHH-----------------------------------cCCCceeecC--CHHHhHHH
Confidence 5788999999999999988876632 1233567886 57789999
Q ss_pred HHHHHcCCceEEEecCccccccCCC---ccE-----EEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEE
Q 000114 1652 SALFEAGKIKVCVMSSSMCWGVPLT---AHL-----VVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2158)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdlp---~~~-----vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~ii 1723 (2158)
+..|+.+...|+|||++++||+|++ .+. +|| +...+.+...|.|++|||||.| ..|.+..
T Consensus 639 Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VI----------gterhes~Rid~Ql~GRtGRqG--dpGsS~f 706 (1025)
T PRK12900 639 IVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFIL----------GSERHESRRIDRQLRGRAGRQG--DPGESVF 706 (1025)
T ss_pred HHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceee----------CCCCCchHHHHHHHhhhhhcCC--CCcceEE
Confidence 9999999999999999999999999 332 334 3345667888999999999998 7888888
Q ss_pred EecCChHH-------HHHHHh-----hCCCccccchhhHHH
Q 000114 1724 LCHAPRKE-------YYKKFL-----YDAFPVESHLHHFLH 1752 (2158)
Q Consensus 1724 l~~~~~~~-------~~~k~l-----~~~~piES~L~~~l~ 1752 (2158)
+++..+.- .+.+++ .++.|+++.+.....
T Consensus 707 fvSleD~Lmr~f~~~~i~~~~~~~~~~e~e~I~~~~i~k~i 747 (1025)
T PRK12900 707 YVSLEDELMRLFGSDRVISVMDRLGHEEGDVIEHSMITKSI 747 (1025)
T ss_pred EechhHHHHHhhCcHHHHHHHHHcCCCCCCcccchHHHHHH
Confidence 88775421 122222 245677777744433
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.1e-11 Score=166.58 Aligned_cols=136 Identities=18% Similarity=0.272 Sum_probs=90.2
Q ss_pred cCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHH
Q 000114 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2158)
Q Consensus 1573 ~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~ 1652 (2158)
.++++|||++|.+..+.++..|..... ..++..+--|++...|..+.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~---------------------------------~~~~~ll~Qg~~~~~r~~l~ 797 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEE---------------------------------LEGYVLLAQGVSSGSRARLT 797 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhccc---------------------------------ccCceEEecCCCCCCHHHHH
Confidence 467899999999998888866632110 11222333355556688999
Q ss_pred HHHHcCCceEEEecCccccccCCCc---cEEEEecceeecCC---------------CCcCcCC----CHHHHHHhhccC
Q 000114 1653 ALFEAGKIKVCVMSSSMCWGVPLTA---HLVVVMGTQYYDGQ---------------ENAHTDY----PVTDLLQMMGHA 1710 (2158)
Q Consensus 1653 ~~F~~g~i~VLVaT~~la~Gvdlp~---~~vVI~gt~~yd~~---------------~~~~~~~----s~~~~lQr~GRa 1710 (2158)
+.|+.+.-.||++|..+..|||+|+ ..|||.+.++-.+. .+.+..+ .+..+.|-+||.
T Consensus 798 ~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRl 877 (928)
T PRK08074 798 KQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRL 877 (928)
T ss_pred HHHHhcCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhh
Confidence 9999998999999999999999996 45667666653222 0112222 366788999999
Q ss_pred CCCCCCCceEEEEEecCChHHHHHHHhhCCCc
Q 000114 1711 SRPLLDNSGKCVILCHAPRKEYYKKFLYDAFP 1742 (2158)
Q Consensus 1711 GR~g~d~~G~~iil~~~~~~~~~~k~l~~~~p 1742 (2158)
-|.. +..|.++++-..-....|.+.+-..+|
T Consensus 878 IRs~-~D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 878 IRTE-TDRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred cccC-CceEEEEEecCccccchHHHHHHHhCC
Confidence 9986 567876666655443445443333333
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.7e-11 Score=157.68 Aligned_cols=127 Identities=17% Similarity=0.147 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.+.++|-..--. ++. . -|..+.||+|||+++.+|++.....+ ..+-+++|+--||.+-+..+..++
T Consensus 82 ~~ydVQliGg~~-Lh~-G-~iaEM~TGEGKTLvA~l~a~l~al~G-----------~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 82 RHFDVQLIGGMT-LHE-G-KIAEMRTGEGKTLVGTLAVYLNALSG-----------KGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred CcchhHHHhhhH-hcc-C-ccccccCCCCChHHHHHHHHHHHHcC-----------CCEEEEeCCHHHHHHHHHHHHHHh
Confidence 456667544333 332 2 58899999999999999998776553 368999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCH-hhhccccEEEcchhHH--HHHHhccC---CCccccccceEEeeccccc
Q 000114 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~-~~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~lIIiDEaH~l 635 (2158)
..+|++|+.++|+.+... +..-.++|+++|..-+ |.|..... +......+.++||||+|.+
T Consensus 148 ~~lGl~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsi 214 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSI 214 (913)
T ss_pred cccCCEEEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhe
Confidence 999999999999876543 3345799999999875 55544321 1233467899999999965
|
|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1e-12 Score=155.57 Aligned_cols=366 Identities=17% Similarity=0.204 Sum_probs=209.2
Q ss_pred ccCCCCCcccccCcceEEecCCCCCCCCCCCCccc--ccCCCChhhHhhcCCCCCCCHHHHHHHHHHHcCCC--cEEEEc
Q 000114 443 CDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLI--KISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSAD--NILLCA 518 (2158)
Q Consensus 443 ~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~--~i~~lp~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~--nvlv~A 518 (2158)
+.+-+.+....+|..-|+..|-...-.|..+.... .|. | +.-..++|+|.+++..++.++. .-+|+.
T Consensus 257 fei~~e~vE~vkkRCieidyPlLeEYDFRND~~npdl~id-L--------KPst~iRpYQEksL~KMFGNgRARSGiIVL 327 (776)
T KOG1123|consen 257 FEIKQESVETVKKRCIEIDYPLLEEYDFRNDNVNPDLDID-L--------KPSTQIRPYQEKSLSKMFGNGRARSGIIVL 327 (776)
T ss_pred eeecHHHHHHHHHhhhccCchhhhhhccccCCCCCCCCcC-c--------CcccccCchHHHHHHHHhCCCcccCceEEE
Confidence 44444444555666667777765444332221110 111 1 2345789999999999987643 568899
Q ss_pred cCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhhhccc
Q 000114 519 PTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEET 598 (2158)
Q Consensus 519 PTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~ 598 (2158)
|.|+|||++..-++.. + +.++|+++..---+.|+...|..+..--.-.++.+|+|.... ...++
T Consensus 328 PCGAGKtLVGvTAa~t-i-------------kK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~Ke~--~~~~~ 391 (776)
T KOG1123|consen 328 PCGAGKTLVGVTAACT-I-------------KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAKER--FPSGA 391 (776)
T ss_pred ecCCCCceeeeeeeee-e-------------cccEEEEecCccCHHHHHHHHHhhcccCccceEEeecccccc--CCCCC
Confidence 9999999987655432 1 226899999988899999998876543344577888876432 23577
Q ss_pred cEEEcchhHHHHHHhccCC------CccccccceEEeeccccccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccC
Q 000114 599 QIIVTTPEKWDIITRKSGD------RTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (2158)
Q Consensus 599 ~IiV~TPekld~l~r~~~~------~~~l~~v~lIIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlp 671 (2158)
.|+|+|.-.+..-.+++.+ ...-+..+++|+||+|.+.. .+..++. .+ +..++ +||+|||-
T Consensus 392 gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVls--------iv---~aHcK-LGLTATLv 459 (776)
T KOG1123|consen 392 GVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLS--------IV---QAHCK-LGLTATLV 459 (776)
T ss_pred cEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHH--------HH---HHHhh-ccceeEEe
Confidence 8999998654222222111 11123468999999998753 2222222 11 22333 89999985
Q ss_pred ChHH----H----------HHHHhccccCceEEecCCcccccceeEEEeeccC-ChhHH--HHHhhHHHH---HH-HHHH
Q 000114 672 NYED----V----------ALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK-KPLQR--FQLMNDLCY---EK-VVAV 730 (2158)
Q Consensus 672 n~~d----v----------~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~-~~~~~--~~~l~~~~~---~~-i~~~ 730 (2158)
..+| + +.|+.......+-.......-+|....|+..... +..++ +..||..-+ +. +.-+
T Consensus 460 REDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~H 539 (776)
T KOG1123|consen 460 REDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFH 539 (776)
T ss_pred eccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHH
Confidence 3222 1 3343322111111111110111111111100000 00000 111221111 11 1111
Q ss_pred h-CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHH
Q 000114 731 A-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDR 809 (2158)
Q Consensus 731 ~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R 809 (2158)
. .+.++|||..+.-.....|..| |--+.+|..++.+|
T Consensus 540 E~RgDKiIVFsDnvfALk~YAikl------------------------------------------~KpfIYG~Tsq~ER 577 (776)
T KOG1123|consen 540 ERRGDKIIVFSDNVFALKEYAIKL------------------------------------------GKPFIYGPTSQNER 577 (776)
T ss_pred HhcCCeEEEEeccHHHHHHHHHHc------------------------------------------CCceEECCCchhHH
Confidence 1 3668888887765444333322 22355899999999
Q ss_pred HHHHHHHh-CCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCC--CC--ccEEEE
Q 000114 810 QLVEDLFG-DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY--DS--YGEGII 884 (2158)
Q Consensus 810 ~~v~~~F~-~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~--d~--~G~~ii 884 (2158)
..+++.|+ +..++-++-.-+....+|+|..+|+|+-...+. |..+=.||.||.-|+.. |. ....|.
T Consensus 578 m~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~G---------SRRQEAQRLGRILRAKk~~de~fnafFYS 648 (776)
T KOG1123|consen 578 MKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGG---------SRRQEAQRLGRILRAKKRNDEEFNAFFYS 648 (776)
T ss_pred HHHHHhcccCCccceEEEeeccCccccCCcccEEEEEccccc---------chHHHHHHHHHHHHHhhcCccccceeeee
Confidence 99999998 456888888899999999999999998444443 45578899998777532 11 234455
Q ss_pred EcCCCcHHHHHH
Q 000114 885 ITGHSELRYYLS 896 (2158)
Q Consensus 885 l~~~~~~~~y~~ 896 (2158)
+++.+..+.|-+
T Consensus 649 LVS~DTqEM~YS 660 (776)
T KOG1123|consen 649 LVSKDTQEMYYS 660 (776)
T ss_pred eeecchHHHHhh
Confidence 666665555443
|
|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.1e-12 Score=150.52 Aligned_cols=298 Identities=13% Similarity=0.210 Sum_probs=187.9
Q ss_pred CCCCCHHHHHHHHHHhcCC--CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000114 1339 FKHFNPIQTQVFTVLYNTD--DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~--~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~ 1416 (2158)
-..++|+|...+..++.++ ++-+|+.|.|+|||++..-|+.. -++ +|++++.+-.-+.|+...++ .+..
T Consensus 300 st~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t------ikK--~clvLcts~VSVeQWkqQfk-~wst 370 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT------IKK--SCLVLCTSAVSVEQWKQQFK-QWST 370 (776)
T ss_pred ccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee------ecc--cEEEEecCccCHHHHHHHHH-hhcc
Confidence 4578999999999998654 46899999999999988655541 133 79999999888888877776 5555
Q ss_pred CCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHH-hhhhccc-----cccceeEEEecccccccCCCCChHHHHHHH
Q 000114 1417 GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALS-RRWKQRK-----YVQQVSLFIIDELHLIGGQGGPVLEVIVSR 1490 (2158)
Q Consensus 1417 ~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~-r~~~~~~-----~l~~v~llIiDEaH~l~~~~g~~~e~~isr 1490 (2158)
.-.-.++.+|++..... -..+.|+|+|..++..-- |.|...+ .-+..+++|+||+|.+.. ..++.+++-
T Consensus 371 i~d~~i~rFTsd~Ke~~--~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA---~MFRRVlsi 445 (776)
T KOG1123|consen 371 IQDDQICRFTSDAKERF--PSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPA---KMFRRVLSI 445 (776)
T ss_pred cCccceEEeeccccccC--CCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchH---HHHHHHHHH
Confidence 54567888888765432 235689999976653211 1111111 124689999999998752 223334433
Q ss_pred HHHHHhhcCCCceEEEeccCCCChHH--------------HHHHhccCCCceEecCCCCcccccEEEEecccccchHHH-
Q 000114 1491 MRYIASQVENKIRIVALSTSLANAKD--------------LGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEAR- 1555 (2158)
Q Consensus 1491 l~~i~~~~~~~~riV~lSATl~n~~d--------------l~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~- 1555 (2158)
+.. .+ -+||+||+-..+| -++|+.....+.+. .|..-....+.....+...
T Consensus 446 v~a-------Hc-KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA------~VqCaEVWCpMt~eFy~eYL 511 (776)
T KOG1123|consen 446 VQA-------HC-KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIA------KVQCAEVWCPMTPEFYREYL 511 (776)
T ss_pred HHH-------Hh-hccceeEEeeccccccccceeecchhhhccHHHHHhCCcee------EEeeeeeecCCCHHHHHHHH
Confidence 332 22 3899999865432 14566554433221 0111111111111111111
Q ss_pred ---------HHhcChHHHHH----HHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhh
Q 000114 1556 ---------MQAMTKPTFTA----IVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDN 1622 (2158)
Q Consensus 1556 ---------~~~~~k~~~~~----i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~ 1622 (2158)
+..|+...+.+ |.-|-..+.++|||..+.-.-...|.
T Consensus 512 ~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAi------------------------------ 561 (776)
T KOG1123|consen 512 RENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAI------------------------------ 561 (776)
T ss_pred hhhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHH------------------------------
Confidence 12234333332 22233466778888877654444442
Q ss_pred hhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHc-CCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHH
Q 000114 1623 IQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA-GKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVT 1701 (2158)
Q Consensus 1623 i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~-g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~ 1701 (2158)
..|-.+++|..++.+|..|++.|.. ..+..++-+.+...++|+|..+|+|.=...|. |-.
T Consensus 562 ----------kl~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~G---------SRR 622 (776)
T KOG1123|consen 562 ----------KLGKPFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGG---------SRR 622 (776)
T ss_pred ----------HcCCceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEccccc---------chH
Confidence 2345688999999999999999984 57899999999999999999999983222222 345
Q ss_pred HHHHhhccCCCC
Q 000114 1702 DLLQMMGHASRP 1713 (2158)
Q Consensus 1702 ~~lQr~GRaGR~ 1713 (2158)
+=.||.||.-|+
T Consensus 623 QEAQRLGRILRA 634 (776)
T KOG1123|consen 623 QEAQRLGRILRA 634 (776)
T ss_pred HHHHHHHHHHHH
Confidence 568999987775
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=132.45 Aligned_cols=140 Identities=29% Similarity=0.372 Sum_probs=102.1
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCH
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~ 592 (2158)
++++++|||+|||.+++..+.+....+ ...+++|++|+++|+.|....+...... ++.+..+.+......
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~---------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 71 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSL---------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQ 71 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcc---------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhH
Confidence 689999999999999999988877652 2348999999999999999999887665 677888888665544
Q ss_pred hh---hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEccc
Q 000114 593 QQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 593 ~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (2158)
.. ....+|+++|++.+........ ......+++||||+|.+......... ...........+++++|||
T Consensus 72 ~~~~~~~~~~i~i~t~~~~~~~~~~~~--~~~~~~~~iiiDE~h~~~~~~~~~~~------~~~~~~~~~~~~~i~~saT 143 (144)
T cd00046 72 QEKLLSGKTDIVVGTPGRLLDELERLK--LSLKKLDLLILDEAHRLLNQGFGLLG------LKILLKLPKDRQVLLLSAT 143 (144)
T ss_pred HHHHhcCCCCEEEECcHHHHHHHHcCC--cchhcCCEEEEeCHHHHhhcchHHHH------HHHHhhCCccceEEEEecc
Confidence 32 5688999999998643333221 23456889999999998653211111 1111224567899999999
Q ss_pred c
Q 000114 670 L 670 (2158)
Q Consensus 670 l 670 (2158)
+
T Consensus 144 p 144 (144)
T cd00046 144 P 144 (144)
T ss_pred C
Confidence 4
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.3e-12 Score=141.99 Aligned_cols=151 Identities=23% Similarity=0.333 Sum_probs=100.3
Q ss_pred CCCHHHHHHHHHHhc------CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHh
Q 000114 1341 HFNPIQTQVFTVLYN------TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~------~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f 1414 (2158)
.|+++|.+|+..+.+ ...++++.+|||||||.++...+.+... ++++++|++.|+.|..+.|. .+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------~~l~~~p~~~l~~Q~~~~~~-~~ 73 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------KVLIVAPNISLLEQWYDEFD-DF 73 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------EEEEEESSHHHHHHHHHHHH-HH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------ceeEecCHHHHHHHHHHHHH-Hh
Confidence 578999999999874 2578999999999999999765554432 79999999999999999996 34
Q ss_pred cCCCCcEEEEEc-------------CCcch--hhhcccCCcEEEeCHHHHHHHHhh---------hhccccccceeEEEe
Q 000114 1415 GQGLGMRVVELT-------------GETAM--DLKLLEKGQIIISTPEKWDALSRR---------WKQRKYVQQVSLFII 1470 (2158)
Q Consensus 1415 ~~~~g~~v~~lt-------------G~~~~--~~~~l~~~~IIV~TPe~l~~l~r~---------~~~~~~l~~v~llIi 1470 (2158)
... ...+.... ..... ........+++++|..+|...... ..........++||+
T Consensus 74 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~ 152 (184)
T PF04851_consen 74 GSE-KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVII 152 (184)
T ss_dssp STT-SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEE
T ss_pred hhh-hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEE
Confidence 332 11111110 00000 112334569999999999876543 112234567899999
Q ss_pred cccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCC
Q 000114 1471 DELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2158)
Q Consensus 1471 DEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~ 1512 (2158)
||||+.....+ +..++. .....+|+||||+.
T Consensus 153 DEaH~~~~~~~--~~~i~~---------~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 153 DEAHHYPSDSS--YREIIE---------FKAAFILGLTATPF 183 (184)
T ss_dssp ETGGCTHHHHH--HHHHHH---------SSCCEEEEEESS-S
T ss_pred ehhhhcCCHHH--HHHHHc---------CCCCeEEEEEeCcc
Confidence 99998864321 222222 35788999999974
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.5e-12 Score=142.39 Aligned_cols=151 Identities=24% Similarity=0.291 Sum_probs=98.8
Q ss_pred CCCHHHHHHHHHHHc------CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSALS------SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~------~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~ 568 (2158)
+|+++|.+++..+.. ...++++.+|||||||.+++..+.+... ++++++|++.|+.|+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------------~~l~~~p~~~l~~Q~~~ 68 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------------KVLIVAPNISLLEQWYD 68 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------------EEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------------ceeEecCHHHHHHHHHH
Confidence 589999999999874 2567999999999999999876666542 69999999999999999
Q ss_pred HHHhhcccCCcEEEEE------------eCCCccCH---hhhccccEEEcchhHHHHHHhccC---------CCcccccc
Q 000114 569 NLSNRLQMYDVKVREL------------SGDQTLTR---QQIEETQIIVTTPEKWDIITRKSG---------DRTYTQLV 624 (2158)
Q Consensus 569 ~~~~~~~~~gi~v~~l------------~Gd~~~~~---~~~~~~~IiV~TPekld~l~r~~~---------~~~~l~~v 624 (2158)
.|....... ..+... ........ ......+++++|..+|....+... ........
T Consensus 69 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (184)
T PF04851_consen 69 EFDDFGSEK-YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKF 147 (184)
T ss_dssp HHHHHSTTS-EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSE
T ss_pred HHHHhhhhh-hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccC
Confidence 996544321 111111 00011111 113467899999999854433211 11334567
Q ss_pred ceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEccccC
Q 000114 625 KLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (2158)
Q Consensus 625 ~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlp 671 (2158)
++||+||||++..... +..++. .....+|+||||++
T Consensus 148 ~~vI~DEaH~~~~~~~--~~~i~~---------~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 148 DLVIIDEAHHYPSDSS--YREIIE---------FKAAFILGLTATPF 183 (184)
T ss_dssp SEEEEETGGCTHHHHH--HHHHHH---------SSCCEEEEEESS-S
T ss_pred CEEEEehhhhcCCHHH--HHHHHc---------CCCCeEEEEEeCcc
Confidence 8999999998753211 232222 45778999999964
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.7e-11 Score=130.67 Aligned_cols=141 Identities=29% Similarity=0.435 Sum_probs=101.1
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhh---h
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL---K 1434 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~---~ 1434 (2158)
+++++.+|||+|||.++..++.+.... ...+ +++|++|+++++.|....+...+.. +..+..+.+...... .
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~--~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-LKGG--QVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKL 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-ccCC--CEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHH
Confidence 368999999999999998888877765 2233 8999999999999999988865542 567777777654432 2
Q ss_pred cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCC
Q 000114 1435 LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (2158)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl 1511 (2158)
.....+|+++|++.+........ ......+++|+||+|.+....... .. +... .......+++++|||+
T Consensus 76 ~~~~~~i~i~t~~~~~~~~~~~~--~~~~~~~~iiiDE~h~~~~~~~~~---~~--~~~~-~~~~~~~~~i~~saTp 144 (144)
T cd00046 76 LSGKTDIVVGTPGRLLDELERLK--LSLKKLDLLILDEAHRLLNQGFGL---LG--LKIL-LKLPKDRQVLLLSATP 144 (144)
T ss_pred hcCCCCEEEECcHHHHHHHHcCC--cchhcCCEEEEeCHHHHhhcchHH---HH--HHHH-hhCCccceEEEEeccC
Confidence 34577999999998876555432 235578999999999987543111 10 1111 2235678999999995
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=99.30 E-value=7e-10 Score=144.66 Aligned_cols=59 Identities=27% Similarity=0.316 Sum_probs=49.6
Q ss_pred HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 507 ~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
++.++..+++.||||+|||++|++|++..+... .+.++||++||++|+.|+++.+..+.
T Consensus 12 al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~---------~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 12 SLRQKRIGMLEASTGVGKTLAMIMAALTMLKER---------PDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc---------cCceEEEECCcHHHHHHHHHHHHHHH
Confidence 455677799999999999999999999877532 13489999999999999999887665
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.9e-10 Score=151.15 Aligned_cols=112 Identities=19% Similarity=0.179 Sum_probs=84.8
Q ss_pred EEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchh-hhcccC
Q 000114 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD-LKLLEK 1438 (2158)
Q Consensus 1360 vli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~-~~~l~~ 1438 (2158)
-|.-+.||+|||+++.+|++-.... +. .+.+++|+.-||.+-++.+...|. .+|++|+.++|+.+.. .+..-.
T Consensus 98 ~iaEM~TGEGKTLvA~l~a~l~al~---G~--~VhvvT~ndyLA~RD~e~m~~l~~-~lGl~v~~i~~~~~~~err~~Y~ 171 (913)
T PRK13103 98 KIAEMRTGEGKTLVGTLAVYLNALS---GK--GVHVVTVNDYLARRDANWMRPLYE-FLGLSVGIVTPFQPPEEKRAAYA 171 (913)
T ss_pred ccccccCCCCChHHHHHHHHHHHHc---CC--CEEEEeCCHHHHHHHHHHHHHHhc-ccCCEEEEECCCCCHHHHHHHhc
Confidence 5889999999999999999866554 44 688999999999999998885554 5699999999987654 344556
Q ss_pred CcEEEeCHHHH-HHHHhh-h---hccccccceeEEEeccccccc
Q 000114 1439 GQIIISTPEKW-DALSRR-W---KQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1439 ~~IIV~TPe~l-~~l~r~-~---~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
++|+++|..-+ .+.+|. . ......+.+.++||||+|.++
T Consensus 172 ~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 172 ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred CCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 89999998875 112221 1 112234778999999999654
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.4e-12 Score=120.76 Aligned_cols=73 Identities=36% Similarity=0.578 Sum_probs=66.5
Q ss_pred ccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccC
Q 000114 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2158)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2158)
....+.++||+|+..+|..+++.|.+|..+|||||+++++|||+|++++||. |+++. +..+|.|++||+|
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~----~~~~~------~~~~~~Q~~GR~~ 75 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF----YDPPW------SPEEYIQRIGRAG 75 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE----SSSES------SHHHHHHHHTTSS
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc----cccCC------CHHHHHHHhhcCC
Confidence 4567899999999999999999999999999999999999999999999999 55443 7789999999999
Q ss_pred CCC
Q 000114 873 RPQ 875 (2158)
Q Consensus 873 R~g 875 (2158)
|.|
T Consensus 76 R~g 78 (78)
T PF00271_consen 76 RIG 78 (78)
T ss_dssp TTT
T ss_pred CCC
Confidence 975
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-09 Score=141.76 Aligned_cols=66 Identities=20% Similarity=0.247 Sum_probs=52.0
Q ss_pred HHHHHHHH---hcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1346 QTQVFTVL---YNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1346 Q~q~~~~l---~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
|.+.+..+ +..+..+++.||||+|||++|++|++..... ..+. ++||++||++|+.|++++|. .+.
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~-~~~~--rvlIstpT~~Lq~Ql~~~l~-~l~ 70 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKE-RPDQ--KIAIAVPTLALMGQLWSELE-RLT 70 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHh-ccCc--eEEEECCcHHHHHHHHHHHH-HHH
Confidence 44444443 3456779999999999999999999987664 1234 99999999999999999888 454
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.6e-11 Score=129.70 Aligned_cols=105 Identities=32% Similarity=0.485 Sum_probs=90.1
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHH
Q 000114 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2158)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~ 811 (2158)
.++++||||+++..++.+++.|.+. ..++.++||+++..+|..
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~-------------------------------------~~~~~~~~~~~~~~~~~~ 69 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP-------------------------------------GIKVAALHGDGSQEEREE 69 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc-------------------------------------CCcEEEEECCCCHHHHHH
Confidence 4679999999999999999888651 245788999999999999
Q ss_pred HHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEE
Q 000114 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2158)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2158)
+.+.|.+|..+||+||+++++|+|+|..++||..+.++ +..+++|++||+||.| ..|.++++
T Consensus 70 ~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~----------~~~~~~Q~~GR~~R~~--~~~~~~~~ 131 (131)
T cd00079 70 VLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPW----------SPSSYLQRIGRAGRAG--QKGTAILL 131 (131)
T ss_pred HHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCC----------CHHHheecccccccCC--CCceEEeC
Confidence 99999999999999999999999999999888744333 6678999999999988 46777653
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.2e-11 Score=151.87 Aligned_cols=340 Identities=19% Similarity=0.281 Sum_probs=185.9
Q ss_pred CCCCCCHHHHHHHHHHHcC---CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSS---ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~---~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~ 568 (2158)
.-++|+|+|+.|+..++.+ ++.-=+.+..|+|||+.++- |...+.. .+++|++|+.+|..|..+
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~------------~~iL~LvPSIsLLsQTlr 224 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA------------ARILFLVPSISLLSQTLR 224 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh------------hheEeecchHHHHHHHHH
Confidence 4568999999999998764 33333445679999998854 3444432 489999999999999999
Q ss_pred HHHhhcccCCcEEEEEeCCCccCHhh----------------------------hccccEEEcchhHHHHHHhccCCCcc
Q 000114 569 NLSNRLQMYDVKVRELSGDQTLTRQQ----------------------------IEETQIIVTTPEKWDIITRKSGDRTY 620 (2158)
Q Consensus 569 ~~~~~~~~~gi~v~~l~Gd~~~~~~~----------------------------~~~~~IiV~TPekld~l~r~~~~~~~ 620 (2158)
.|..- +.+.++...+++|...++.. ..+--|+++|.+.+-.+..- ...-
T Consensus 225 ew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA--Qe~G 301 (1518)
T COG4889 225 EWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA--QEAG 301 (1518)
T ss_pred HHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH--HHcC
Confidence 99863 34567777777765543221 01234888888865433322 1234
Q ss_pred ccccceEEeeccccccc--CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceE------Eec
Q 000114 621 TQLVKLLIIDEIHLLHD--NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLF------YFD 692 (2158)
Q Consensus 621 l~~v~lIIiDEaH~l~d--~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~------~f~ 692 (2158)
+..+++||.||||+-.. .-|.. .+...|... .+.-...+.+-|+||..-+.+-.+--.......+. .|.
T Consensus 302 ~~~fDliicDEAHRTtGa~~a~dd-~saFt~vHs--~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fG 378 (1518)
T COG4889 302 LDEFDLIICDEAHRTTGATLAGDD-KSAFTRVHS--DQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFG 378 (1518)
T ss_pred CCCccEEEecchhccccceecccC-cccceeecC--cchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhc
Confidence 66789999999997532 01100 011111100 00112234577888843222211111000000000 111
Q ss_pred CCcccc------------cceeEEEeeccCChhHHHH-------------HhhHH--HHHHHHHHhC-------------
Q 000114 693 NSYRPV------------PLSQQYIGIQVKKPLQRFQ-------------LMNDL--CYEKVVAVAG------------- 732 (2158)
Q Consensus 693 ~~~rpv------------~l~~~~~~~~~~~~~~~~~-------------~l~~~--~~~~i~~~~~------------- 732 (2158)
+.|... .....+..+........++ ....+ |+..+.+..+
T Consensus 379 eef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~a 458 (1518)
T COG4889 379 EEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTA 458 (1518)
T ss_pred hhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCch
Confidence 111110 0001111111110000000 00000 1111211111
Q ss_pred -CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhh-hhccCCeEEec--CCCCHHH
Q 000114 733 -KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK-DLLPYGFAIHH--AGMTRGD 808 (2158)
Q Consensus 733 -~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~-~ll~~gv~~hH--agl~~~~ 808 (2158)
..++|-||.+.+....++..+.... ..+. .+++ +.....+.+-| |.|...+
T Consensus 459 p~~RAIaF~k~I~tSK~i~~sFe~Vv--------------------e~Y~-----~Elk~d~~nL~iSi~HvDGtmNal~ 513 (1518)
T COG4889 459 PMQRAIAFAKDIKTSKQIAESFETVV--------------------EAYD-----EELKKDFKNLKISIDHVDGTMNALE 513 (1518)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH--------------------HHHH-----HHHHhcCCCceEEeecccccccHHH
Confidence 1245677777777766666554321 1011 1111 12333455556 7899999
Q ss_pred HHHHHHH---HhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEE
Q 000114 809 RQLVEDL---FGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2158)
Q Consensus 809 R~~v~~~---F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2158)
|...+.. |....++||--.-.|+.|||+|+.+-||- +||.+ |.-|++|-+||.-|... .+-.+||+
T Consensus 514 R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViF----f~pr~------smVDIVQaVGRVMRKa~-gK~yGYII 582 (1518)
T COG4889 514 RLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIF----FDPRS------SMVDIVQAVGRVMRKAK-GKKYGYII 582 (1518)
T ss_pred HHHHHhccCCCCcchheeeccchhhhcCCCccccceEEE----ecCch------hHHHHHHHHHHHHHhCc-CCccceEE
Confidence 9554443 45678999999999999999999999986 88887 89999999999999543 23345555
Q ss_pred c
Q 000114 886 T 886 (2158)
Q Consensus 886 ~ 886 (2158)
.
T Consensus 583 L 583 (1518)
T COG4889 583 L 583 (1518)
T ss_pred E
Confidence 4
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.9e-10 Score=145.69 Aligned_cols=161 Identities=22% Similarity=0.214 Sum_probs=97.4
Q ss_pred CCHHHHHHHHHHHc----CCC---cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000114 496 LNRVQSRVYKSALS----SAD---NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (2158)
Q Consensus 496 l~~iQ~~~i~~~l~----~~~---nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~ 568 (2158)
-..+|-+|+..+.. +.+ -++-.|.||||||++=.- |+..+... ..+.+..+..-.|.|.-|.-.
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd~--------~~g~RfsiALGLRTLTLQTGd 479 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRDD--------KQGARFAIALGLRSLTLQTGH 479 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCCC--------CCCceEEEEccccceeccchH
Confidence 35699999988754 111 245669999999986433 33333321 145688888888888888888
Q ss_pred HHHhhcccCCcEEEEEeCCCccC-----------------------------------------H-------------hh
Q 000114 569 NLSNRLQMYDVKVRELSGDQTLT-----------------------------------------R-------------QQ 594 (2158)
Q Consensus 569 ~~~~~~~~~gi~v~~l~Gd~~~~-----------------------------------------~-------------~~ 594 (2158)
.++++++--.-.++++.|+.... . ..
T Consensus 480 a~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~r 559 (1110)
T TIGR02562 480 ALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKT 559 (1110)
T ss_pred HHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhh
Confidence 88887653323344444422100 0 00
Q ss_pred hccccEEEcchhHHHHHH--hccCCCcccc----ccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEcc
Q 000114 595 IEETQIIVTTPEKWDIIT--RKSGDRTYTQ----LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (2158)
Q Consensus 595 ~~~~~IiV~TPekld~l~--r~~~~~~~l~----~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSA 668 (2158)
.-.+.|+|||++.+-... -+.+. ..+. .=+.|||||+|.+ .+..-.++.+++..... -..++++|||
T Consensus 560 ll~apv~V~TIDQlL~a~~~~r~~~-~~l~ll~La~svlVlDEVHaY----D~~~~~~L~rlL~w~~~--lG~~VlLmSA 632 (1110)
T TIGR02562 560 LLAAPVLVCTIDHLIPATESHRGGH-HIAPMLRLMSSDLILDEPDDY----EPEDLPALLRLVQLAGL--LGSRVLLSSA 632 (1110)
T ss_pred hhcCCeEEecHHHHHHHhhhcccch-hHHHHHHhcCCCEEEECCccC----CHHHHHHHHHHHHHHHH--cCCCEEEEeC
Confidence 113569999999863322 11111 1111 1268999999965 44445556666554443 4688999999
Q ss_pred ccCC
Q 000114 669 TLPN 672 (2158)
Q Consensus 669 Tlpn 672 (2158)
|||.
T Consensus 633 TLP~ 636 (1110)
T TIGR02562 633 TLPP 636 (1110)
T ss_pred CCCH
Confidence 9995
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-09 Score=145.20 Aligned_cols=130 Identities=21% Similarity=0.310 Sum_probs=85.2
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHH
Q 000114 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2158)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v 812 (2158)
++.++||++|.+..+.++..|.... . ..+.. ++. ..|..+
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~-~-----------------------------------~~ll~-Q~~---~~~~~l 573 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDL-R-----------------------------------LMLLV-QGD---QPRQRL 573 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhc-C-----------------------------------CcEEE-eCC---chHHHH
Confidence 4458999999999999888876421 0 11112 332 246677
Q ss_pred HHHHh----CCCceEEEechhhhhccCCCc--eEEEEecccccCCCCC----------------ccccC----CHHHHHH
Q 000114 813 EDLFG----DGHVQVLVSTATLAWGVNLPA--HTVIIKGTQIYNPEKG----------------AWTEL----SPLDIMQ 866 (2158)
Q Consensus 813 ~~~F~----~g~i~VLVaT~tla~GVdlP~--v~vVI~~~~~yd~~~g----------------~~~~~----s~~~~~Q 866 (2158)
++.|+ .|.-.||++|..+..|||+|+ .+.||....||.++.. .|.++ ....+.|
T Consensus 574 l~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Q 653 (697)
T PRK11747 574 LEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQ 653 (697)
T ss_pred HHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 76666 467789999999999999997 4666666777765531 12222 3457889
Q ss_pred hhcccCCCCCCCccEEEEEcCCCcHHHHHHhhcCCCc
Q 000114 867 MLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (2158)
Q Consensus 867 r~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~p 903 (2158)
.+||.=|...| .|..+++-..-....|-+.+-..+|
T Consensus 654 g~GRlIRs~~D-~G~i~ilD~R~~~~~Yg~~~l~sLP 689 (697)
T PRK11747 654 AVGRLIRSEQD-RGRVTILDRRLLTKRYGKRLLDALP 689 (697)
T ss_pred HhccccccCCc-eEEEEEEcccccchhHHHHHHHhCC
Confidence 99999996544 6776666555444455444444444
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.9e-11 Score=157.19 Aligned_cols=112 Identities=17% Similarity=0.219 Sum_probs=95.0
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHH
Q 000114 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2158)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~ 811 (2158)
.+.++||||+|++.++.++..|.+.++ .+.++||+|+..+|..
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~gi-------------------------------------~~~~~h~~~~~~~R~~ 487 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGI-------------------------------------KVRYLHSDIDTLERVE 487 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhcce-------------------------------------eEEEEECCCCHHHHHH
Confidence 367999999999999999999987543 2566799999999999
Q ss_pred HHHHHhCCCceEEEechhhhhccCCCceEEEEeccc-ccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCC
Q 000114 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQ-IYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2158)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~-~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2158)
+++.|+.|.+.|||||+.+++|+|+|++.+||..+. .+..+ -+..+|+||+|||||. ..|.++++++..
T Consensus 488 ~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~eifG~~------~~~~~yiqr~GR~gR~---~~G~~i~~~~~~ 557 (652)
T PRK05298 488 IIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGFL------RSERSLIQTIGRAARN---VNGKVILYADKI 557 (652)
T ss_pred HHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCcccccC------CCHHHHHHHhccccCC---CCCEEEEEecCC
Confidence 999999999999999999999999999999888332 12222 2778999999999994 479999999854
|
|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.6e-11 Score=128.58 Aligned_cols=113 Identities=27% Similarity=0.363 Sum_probs=92.7
Q ss_pred HHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCC
Q 000114 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLN 1644 (2158)
Q Consensus 1565 ~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~ 1644 (2158)
..+......++++||||++...++.++..|.. ...++.++||+++
T Consensus 19 ~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~-----------------------------------~~~~~~~~~~~~~ 63 (131)
T cd00079 19 ELLKEHLKKGGKVLIFCPSKKMLDELAELLRK-----------------------------------PGIKVAALHGDGS 63 (131)
T ss_pred HHHHhcccCCCcEEEEeCcHHHHHHHHHHHHh-----------------------------------cCCcEEEEECCCC
Confidence 33434433678999999999999888866621 3456899999999
Q ss_pred HHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEE
Q 000114 1645 KTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVIL 1724 (2158)
Q Consensus 1645 ~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil 1724 (2158)
..+|..+.+.|.+|...||++|+.+++|+|+|....|| ....+++..++.|++||+||.| ..|.++++
T Consensus 64 ~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi----------~~~~~~~~~~~~Q~~GR~~R~~--~~~~~~~~ 131 (131)
T cd00079 64 QEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVI----------NYDLPWSPSSYLQRIGRAGRAG--QKGTAILL 131 (131)
T ss_pred HHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEE----------EeCCCCCHHHheecccccccCC--CCceEEeC
Confidence 99999999999999999999999999999999776666 2344778999999999999988 37777653
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.8e-09 Score=147.20 Aligned_cols=72 Identities=21% Similarity=0.336 Sum_probs=60.8
Q ss_pred CCCCCHHHHHHHHHHh---cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHH
Q 000114 1339 FKHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~---~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~ 1412 (2158)
|..++|.|.+....++ ..+.++++.||||+|||++.+.|.+...... +...+++|.+.|.+-..|..+++++
T Consensus 8 y~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~--~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 8 YEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEK--PEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhc--cccccEEEEcccchHHHHHHHHHHh
Confidence 7788999999988865 4677899999999999999999999866542 2123899999999999999999985
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.1e-10 Score=146.58 Aligned_cols=162 Identities=17% Similarity=0.141 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHhc----CCC---cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1343 NPIQTQVFTVLYN----TDD---NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1343 ~~iQ~q~~~~l~~----~~~---nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
..+|-+|+..+.. +.+ =++--|.||||||++=.- |+..+.. +..++|..+-.-.|.|.-|+-..++++++
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd--~~~g~RfsiALGLRTLTLQTGda~r~rL~ 486 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRD--DKQGARFAIALGLRSLTLQTGHALKTRLN 486 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCC--CCCCceEEEEccccceeccchHHHHHhcC
Confidence 4689999988754 111 134459999999987533 3334443 23345888999999999999888887764
Q ss_pred CCCCcEEEEEcCCcc----------------------hh--------------------------------hhcccCCcE
Q 000114 1416 QGLGMRVVELTGETA----------------------MD--------------------------------LKLLEKGQI 1441 (2158)
Q Consensus 1416 ~~~g~~v~~ltG~~~----------------------~~--------------------------------~~~l~~~~I 1441 (2158)
- ..-..+++.|+.. .. .+.+-.++|
T Consensus 487 L-~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv 565 (1110)
T TIGR02562 487 L-SDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPV 565 (1110)
T ss_pred C-CccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCe
Confidence 2 1222333333110 00 011123489
Q ss_pred EEeCHHHHHHHHhhhhccc-ccc----ceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh
Q 000114 1442 IISTPEKWDALSRRWKQRK-YVQ----QVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (2158)
Q Consensus 1442 IV~TPe~l~~l~r~~~~~~-~l~----~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~ 1514 (2158)
+|||+.++....-..+... .+. .-+.|||||+|.+.... -.++.++-..... -+.++++||||+|..
T Consensus 566 ~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~----~~~L~rlL~w~~~--lG~~VlLmSATLP~~ 637 (1110)
T TIGR02562 566 LVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED----LPALLRLVQLAGL--LGSRVLLSSATLPPA 637 (1110)
T ss_pred EEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH----HHHHHHHHHHHHH--cCCCEEEEeCCCCHH
Confidence 9999999876552222111 111 13579999999774322 2244444444333 268899999999873
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.7e-10 Score=151.52 Aligned_cols=200 Identities=17% Similarity=0.210 Sum_probs=114.4
Q ss_pred cEEEEccccCChHHHHHHHhccccCceE---EecCCcccccceeEEEeeccCChh--HHHHHhhHHHHHHHHHHhCCCeE
Q 000114 662 RLVGLSATLPNYEDVALFLRVNLEKGLF---YFDNSYRPVPLSQQYIGIQVKKPL--QRFQLMNDLCYEKVVAVAGKHQV 736 (2158)
Q Consensus 662 riv~lSATlpn~~dv~~~l~~~~~~~~~---~f~~~~rpv~l~~~~~~~~~~~~~--~~~~~l~~~~~~~i~~~~~~~~v 736 (2158)
.+|++||||.....+..+++.......+ ...+.+.........+........ .....+...+.+.+ .. .++.+
T Consensus 405 ~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~-~~-~~~~~ 482 (654)
T COG1199 405 SVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREIL-KA-SPGGV 482 (654)
T ss_pred cEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHH-hh-cCCCE
Confidence 4899999998877777777665332222 111111111111122221111111 12222222222222 11 24589
Q ss_pred EEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHH
Q 000114 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816 (2158)
Q Consensus 737 LVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F 816 (2158)
+||++|-+....++..+...... + .-..+|.-+ +...++.|
T Consensus 483 lvlF~Sy~~l~~~~~~~~~~~~~---~---------------------------------~v~~q~~~~---~~~~l~~f 523 (654)
T COG1199 483 LVLFPSYEYLKRVAERLKDERST---L---------------------------------PVLTQGEDE---REELLEKF 523 (654)
T ss_pred EEEeccHHHHHHHHHHHhhcCcc---c---------------------------------eeeecCCCc---HHHHHHHH
Confidence 99999999999998888764321 0 011133333 44666667
Q ss_pred hCCCc-eEEEechhhhhccCCCce--EEEEecccccCCCCC----------------cc----ccCCHHHHHHhhcccCC
Q 000114 817 GDGHV-QVLVSTATLAWGVNLPAH--TVIIKGTQIYNPEKG----------------AW----TELSPLDIMQMLGRAGR 873 (2158)
Q Consensus 817 ~~g~i-~VLVaT~tla~GVdlP~v--~vVI~~~~~yd~~~g----------------~~----~~~s~~~~~Qr~GRAGR 873 (2158)
+.+.- -++|+|..++.|||+|+- ..||....||-.+.. .| .......+.|.+||+=|
T Consensus 524 ~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR 603 (654)
T COG1199 524 KASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIR 603 (654)
T ss_pred HHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccc
Confidence 65444 899999999999999986 445555566643321 11 12245689999999999
Q ss_pred CCCCCccEEEEEcCCCcHHHHHHhhcCCCc
Q 000114 874 PQYDSYGEGIIITGHSELRYYLSLMNQQLP 903 (2158)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y~~ll~~~~p 903 (2158)
+.+..|..+++-..-....|.+.+...+|
T Consensus 604 -~~~D~G~ivllD~R~~~~~y~~~l~~~l~ 632 (654)
T COG1199 604 -SEDDRGVIVLLDKRYATKRYGKLLLDSLP 632 (654)
T ss_pred -cCCCceEEEEecccchhhhHHHHHHHhCC
Confidence 45668888887766555556665544444
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.1e-11 Score=116.79 Aligned_cols=74 Identities=18% Similarity=0.297 Sum_probs=68.1
Q ss_pred HhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccC
Q 000114 1631 TLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHA 1710 (2158)
Q Consensus 1631 ~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRa 1710 (2158)
..+..+..+||+++..+|..+++.|.+|...|||||+.+++|+|+|.+.+|| ....+.+..+|.|++||+
T Consensus 5 ~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi----------~~~~~~~~~~~~Q~~GR~ 74 (78)
T PF00271_consen 5 KKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVI----------FYDPPWSPEEYIQRIGRA 74 (78)
T ss_dssp HTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEE----------ESSSESSHHHHHHHHTTS
T ss_pred HCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeecccccccccccccccc----------ccccCCCHHHHHHHhhcC
Confidence 4567899999999999999999999999999999999999999999998888 455678999999999999
Q ss_pred CCCC
Q 000114 1711 SRPL 1714 (2158)
Q Consensus 1711 GR~g 1714 (2158)
||.|
T Consensus 75 ~R~g 78 (78)
T PF00271_consen 75 GRIG 78 (78)
T ss_dssp STTT
T ss_pred CCCC
Confidence 9975
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.5e-09 Score=137.78 Aligned_cols=127 Identities=12% Similarity=0.094 Sum_probs=92.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.++++|--.--. ++.+ -|....||=|||+++.+|+.-....+ ..|-+++..--||..=+..+...+
T Consensus 78 r~ydVQliGglv-Lh~G--~IAEMkTGEGKTLvAtLpayLnAL~G-----------kgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 78 RPYDVQIIGGII-LDLG--SVAEMKTGEGKTITSIAPVYLNALTG-----------KGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred CcCchHHHHHHH-HhcC--CeeeecCCCCccHHHHHHHHHHHhcC-----------CceEEEecchhhhhhhHHHHHHHH
Confidence 567777665543 3332 47899999999999999886544433 246677777889988888888888
Q ss_pred ccCCcEEEEEeCCCccCH-hhhccccEEEcchhHH--HHHHhccC---CCccccccceEEeeccccc
Q 000114 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~-~~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~lIIiDEaH~l 635 (2158)
..+|++|+....+..... +..-.++|.++|..-+ |.|.-+.. +......+.+.||||||.+
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSI 210 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSI 210 (925)
T ss_pred HHhCCceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhe
Confidence 899999999988765543 3456899999999875 65554431 2233456789999999965
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.8e-11 Score=147.11 Aligned_cols=340 Identities=18% Similarity=0.277 Sum_probs=183.0
Q ss_pred CCCCCHHHHHHHHHHhc---CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1339 FKHFNPIQTQVFTVLYN---TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~---~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
-+.|+|+|++|+.+.++ .++.-=+.+..|+|||..+ |-|...+.. . +++|++|+.+|..|..+.|...-
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTs-LkisEala~----~--~iL~LvPSIsLLsQTlrew~~~~- 230 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTS-LKISEALAA----A--RILFLVPSISLLSQTLREWTAQK- 230 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchH-HHHHHHHhh----h--heEeecchHHHHHHHHHHHhhcc-
Confidence 46899999999999865 3444555667899999888 445555443 2 89999999999999999998542
Q ss_pred CCCCcEEEEEcCCcchh------------------h-------hcccCC---cEEEeCHHHHHHHHhhhhccccccceeE
Q 000114 1416 QGLGMRVVELTGETAMD------------------L-------KLLEKG---QIIISTPEKWDALSRRWKQRKYVQQVSL 1467 (2158)
Q Consensus 1416 ~~~g~~v~~ltG~~~~~------------------~-------~~l~~~---~IIV~TPe~l~~l~r~~~~~~~l~~v~l 1467 (2158)
.+.++...+++|.... . +..+++ -||++|.+.+..+-.. +..-+..++|
T Consensus 231 -~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA--Qe~G~~~fDl 307 (1518)
T COG4889 231 -ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA--QEAGLDEFDL 307 (1518)
T ss_pred -CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH--HHcCCCCccE
Confidence 2355555555543221 0 011111 5888888776554332 4556888999
Q ss_pred EEecccccccCC--CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHH-H---H-------------HHhccCCCce
Q 000114 1468 FIIDELHLIGGQ--GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKD-L---G-------------EWIGATSHGL 1528 (2158)
Q Consensus 1468 lIiDEaH~l~~~--~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~d-l---~-------------~wl~~~~~~i 1528 (2158)
+|.||||+-.+. .|.. ....+|+.. .+.-+..+-+-++||+.-..+ . + .-+|.. ...
T Consensus 308 iicDEAHRTtGa~~a~dd-~saFt~vHs--~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGee-f~r 383 (1518)
T COG4889 308 IICDEAHRTTGATLAGDD-KSAFTRVHS--DQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEE-FHR 383 (1518)
T ss_pred EEecchhccccceecccC-cccceeecC--cchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchh-hhc
Confidence 999999965321 1110 111111110 000013344667777531110 0 0 000000 000
Q ss_pred EecCCCC-cc--cccEEEEecccccchHHHHHh------------cChH---HHHHHHHhH-------------hcCCCE
Q 000114 1529 FNFPPGV-RP--VPLEIHIQGVDITNFEARMQA------------MTKP---TFTAIVQHA-------------KNEKPA 1577 (2158)
Q Consensus 1529 ~~f~~~~-rp--v~l~~~i~~~~~~~~~~~~~~------------~~k~---~~~~i~~~~-------------~~~~~~ 1577 (2158)
..|...+ |. ..-.+.+...+.......+.. +... +...+...- .+..++
T Consensus 384 l~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RA 463 (1518)
T COG4889 384 LGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRA 463 (1518)
T ss_pred ccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHH
Confidence 1111100 00 000111111111111111110 0000 001111100 112246
Q ss_pred EEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHH---
Q 000114 1578 LVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSAL--- 1654 (2158)
Q Consensus 1578 IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~--- 1654 (2158)
|-||.+.+....++..+-. -++.|.+.+.+. -..+...|....|.|...+|...+.+
T Consensus 464 IaF~k~I~tSK~i~~sFe~------------------Vve~Y~~Elk~d--~~nL~iSi~HvDGtmNal~R~~l~~l~~~ 523 (1518)
T COG4889 464 IAFAKDIKTSKQIAESFET------------------VVEAYDEELKKD--FKNLKISIDHVDGTMNALERLDLLELKNT 523 (1518)
T ss_pred HHHHHhhHHHHHHHHHHHH------------------HHHHHHHHHHhc--CCCceEEeecccccccHHHHHHHHhccCC
Confidence 7788877777777755411 122222222221 11233334444578998888554443
Q ss_pred HHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCC-CCceEEEE
Q 000114 1655 FEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLL-DNSGKCVI 1723 (2158)
Q Consensus 1655 F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~-d~~G~~ii 1723 (2158)
|.....+||---..++.|||+|+..-|| +|+|+. +..+++|-+||..|... .+.|..++
T Consensus 524 ~~~neckIlSNaRcLSEGVDVPaLDsVi----Ff~pr~------smVDIVQaVGRVMRKa~gK~yGYIIL 583 (1518)
T COG4889 524 FEPNECKILSNARCLSEGVDVPALDSVI----FFDPRS------SMVDIVQAVGRVMRKAKGKKYGYIIL 583 (1518)
T ss_pred CCcchheeeccchhhhcCCCccccceEE----EecCch------hHHHHHHHHHHHHHhCcCCccceEEE
Confidence 3567889999999999999999999998 888885 78999999999999532 23455544
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.5e-10 Score=151.68 Aligned_cols=200 Identities=20% Similarity=0.194 Sum_probs=114.3
Q ss_pred ceEEEeccCCCChHHHHHHhccCCCce-----EecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhH-hcCC
Q 000114 1502 IRIVALSTSLANAKDLGEWIGATSHGL-----FNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHA-KNEK 1575 (2158)
Q Consensus 1502 ~riV~lSATl~n~~dl~~wl~~~~~~i-----~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~-~~~~ 1575 (2158)
..+|++||||.....+..+++...... ...+|..........+. ........ ..+.......+...+ ...+
T Consensus 404 ~~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~-~~~~~~~~--~~~~~~~~~~i~~~~~~~~~ 480 (654)
T COG1199 404 ASVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVP-TDLPEPRE--PELLAKLAAYLREILKASPG 480 (654)
T ss_pred CcEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEecc-ccCCCCCC--hHHHHHHHHHHHHHHhhcCC
Confidence 448889999988777776666543211 11111111111111111 11111110 011122222222221 2345
Q ss_pred CEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHH
Q 000114 1576 PALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALF 1655 (2158)
Q Consensus 1576 ~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F 1655 (2158)
+++||++|.+..+.++..+..... .-....++.. .+..+++.|
T Consensus 481 ~~lvlF~Sy~~l~~~~~~~~~~~~----------------------------------~~~v~~q~~~---~~~~~l~~f 523 (654)
T COG1199 481 GVLVLFPSYEYLKRVAERLKDERS----------------------------------TLPVLTQGED---EREELLEKF 523 (654)
T ss_pred CEEEEeccHHHHHHHHHHHhhcCc----------------------------------cceeeecCCC---cHHHHHHHH
Confidence 899999999988888866532100 0012333333 344667777
Q ss_pred HcCCc-eEEEecCccccccCCCc---cEEEEecceeecCC-------------------CCcCcCCCHHHHHHhhccCCC
Q 000114 1656 EAGKI-KVCVMSSSMCWGVPLTA---HLVVVMGTQYYDGQ-------------------ENAHTDYPVTDLLQMMGHASR 1712 (2158)
Q Consensus 1656 ~~g~i-~VLVaT~~la~Gvdlp~---~~vVI~gt~~yd~~-------------------~~~~~~~s~~~~lQr~GRaGR 1712 (2158)
..+.- .++|+|..+..|||+|+ ..|||.|.++-.+. ...+.+..+..+.|.+||+-|
T Consensus 524 ~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR 603 (654)
T COG1199 524 KASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIR 603 (654)
T ss_pred HHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccc
Confidence 76544 89999999999999995 46677676653222 123444458889999999999
Q ss_pred CCCCCceEEEEEecCChHHHHHHHhhCCCc
Q 000114 1713 PLLDNSGKCVILCHAPRKEYYKKFLYDAFP 1742 (2158)
Q Consensus 1713 ~g~d~~G~~iil~~~~~~~~~~k~l~~~~p 1742 (2158)
.- +..|.++++-..-....|.+.+.+.+|
T Consensus 604 ~~-~D~G~ivllD~R~~~~~y~~~l~~~l~ 632 (654)
T COG1199 604 SE-DDRGVIVLLDKRYATKRYGKLLLDSLP 632 (654)
T ss_pred cC-CCceEEEEecccchhhhHHHHHHHhCC
Confidence 64 778888888776665667777765554
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.9e-09 Score=142.67 Aligned_cols=63 Identities=21% Similarity=0.138 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHh---cC-----CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH
Q 000114 1341 HFNPIQTQVFTVLY---NT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~---~~-----~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~ 1407 (2158)
++++-|.+....++ .+ +..++|-||||+|||++|++|++..... .+. ++||-+.|++|-+|..
T Consensus 25 e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~--~~k--~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 25 IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA--EKK--KLVISTATVALQEQLV 95 (697)
T ss_pred CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH--cCC--eEEEEcCCHHHHHHHH
Confidence 68999999666654 44 3668899999999999999999865554 244 8999999999999986
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.5e-09 Score=138.91 Aligned_cols=127 Identities=17% Similarity=0.104 Sum_probs=94.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.++++|--..-. +. +.-|+.+.||.|||+++.+|+.-....+ ..|-+|+++.-||..-++.+...+
T Consensus 76 r~ydvQlig~l~-L~--~G~IaEm~TGEGKTL~a~l~ayl~aL~G-----------~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 76 RHFDVQLIGGLV-LN--DGKIAEMKTGEGKTLVATLPAYLNALTG-----------KGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred CCCchHhhhhHh-hc--CCccccccCCCCchHHHHHHHHHHHhcC-----------CceEEEeCCHHHHHHHHHHHHHHH
Confidence 366777655432 22 2378999999999999999985443332 258899999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCHh-hhccccEEEcchhHH--HHHHhccC---CCccccccceEEeeccccc
Q 000114 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~lIIiDEaH~l 635 (2158)
..+|++|+...++.+...+ ..-.++|+++|..-+ |.|.-+.. .......+.+.||||||.+
T Consensus 142 ~~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhh
Confidence 9999999999887765543 355789999999764 55544331 1223456789999999965
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.9e-09 Score=135.08 Aligned_cols=127 Identities=16% Similarity=0.091 Sum_probs=95.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.+.++|-..--.+ +. . -|..+.||-|||+++.+|+.-....+ ..|-+|++.--||..=++.+...+
T Consensus 85 r~ydVQliGgl~L-h~-G-~IAEM~TGEGKTL~atlpaylnAL~G-----------kgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 85 RHFDVQLIGGMVL-HE-G-QIAEMKTGEGKTLVATLPSYLNALTG-----------KGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred CcchhHHHhhhhh-cC-C-ceeeecCCCChhHHHHHHHHHHhhcC-----------CCeEEEeCCHHHHHhHHHHHHHHH
Confidence 4566775544333 22 2 68899999999999999987665543 258899999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCHh-hhccccEEEcchhHH--HHHHhccC---CCccccccceEEeeccccc
Q 000114 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~lIIiDEaH~l 635 (2158)
..+|++|+...++.+...+ ..-.++|+++|+..+ |.|.-+.. .......+.+.||||||.+
T Consensus 151 ~~LGLtvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred HHhCCeEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccce
Confidence 9999999999887765543 355899999999886 54443321 1234567889999999965
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-08 Score=127.95 Aligned_cols=328 Identities=19% Similarity=0.237 Sum_probs=186.4
Q ss_pred CCCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 494 TQLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
-.++++|.+-+..+ ++.+-|.|+.-.-|-|||+..+ +.+-.+.......| --+|++|.-.| ..+.++|
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtI-s~l~yl~~~~~~~G-------PfLVi~P~StL-~NW~~Ef 236 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTI-SLLGYLKGRKGIPG-------PFLVIAPKSTL-DNWMNEF 236 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHH-HHHHHHHHhcCCCC-------CeEEEeeHhhH-HHHHHHH
Confidence 37899999887654 4555689999999999998653 33333333221112 35889998766 5677888
Q ss_pred HhhcccCCcEEEEEeCCCccCHhh------hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQ------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le 644 (2158)
+++.. +++|..++||....... ....+|+|||.|.. .+.. ....--..+++||||+|++-...
T Consensus 237 ~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~---i~dk-~~lk~~~W~ylvIDEaHRiKN~~----- 305 (971)
T KOG0385|consen 237 KRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIA---IKDK-SFLKKFNWRYLVIDEAHRIKNEK----- 305 (971)
T ss_pred HHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHH---HhhH-HHHhcCCceEEEechhhhhcchh-----
Confidence 87654 67899999987432221 23789999999963 2211 00111125899999999986532
Q ss_pred HHHHHHHHHHhhccccccEEEEccccC--C------------------hHHHHHHHhccccCce----EEecCCcccc--
Q 000114 645 SIVARTVRQIETTKEHIRLVGLSATLP--N------------------YEDVALFLRVNLEKGL----FYFDNSYRPV-- 698 (2158)
Q Consensus 645 ~iv~r~~~~~~~~~~~~riv~lSATlp--n------------------~~dv~~~l~~~~~~~~----~~f~~~~rpv-- 698 (2158)
+.+.++++.+. ...-+++|.|.- | .+++..|+......+. .......+|.
T Consensus 306 s~L~~~lr~f~----~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlL 381 (971)
T KOG0385|consen 306 SKLSKILREFK----TDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLL 381 (971)
T ss_pred hHHHHHHHHhc----ccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHH
Confidence 23334443322 233477888821 2 3455555543110000 0000000000
Q ss_pred ------------cce--eEEEeeccC-------------------Ch--hHHH-HHh---hHH-----------------
Q 000114 699 ------------PLS--QQYIGIQVK-------------------KP--LQRF-QLM---NDL----------------- 722 (2158)
Q Consensus 699 ------------~l~--~~~~~~~~~-------------------~~--~~~~-~~l---~~~----------------- 722 (2158)
|.. ..+++.... .. ..++ +.| .+.
T Consensus 382 RR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyt 461 (971)
T KOG0385|consen 382 RRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYT 461 (971)
T ss_pred HHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCC
Confidence 000 111111100 00 0000 000 000
Q ss_pred -------------HHHHHHHH--hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcc
Q 000114 723 -------------CYEKVVAV--AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787 (2158)
Q Consensus 723 -------------~~~~i~~~--~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 787 (2158)
+.++++.. ..+++||||..=.+ +-..|.+.+.
T Consensus 462 tdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~----mLDILeDyc~----------------------------- 508 (971)
T KOG0385|consen 462 TDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTR----MLDILEDYCM----------------------------- 508 (971)
T ss_pred cchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHH----HHHHHHHHHH-----------------------------
Confidence 11222221 12566777753221 2222222211
Q ss_pred hhhhhccCCeEEecCCCCHHHHHHHHHHHhCC---CceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHH
Q 000114 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG---HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (2158)
Q Consensus 788 ~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g---~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2158)
+-.+...-.-|.++.++|...++.|... ..-.|++|-+.+-|||+-+.++||-++.-|+|.. =
T Consensus 509 ----~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~----------D 574 (971)
T KOG0385|consen 509 ----LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQV----------D 574 (971)
T ss_pred ----hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchh----------h
Confidence 1122333448999999999999999754 3456899999999999999999999777777663 5
Q ss_pred HHhhcccCCCCCCCccEEEEEcCCCcHH
Q 000114 865 MQMLGRAGRPQYDSYGEGIIITGHSELR 892 (2158)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~~~~ 892 (2158)
+|.+-||-|-|..+.-.+|.+++.+..+
T Consensus 575 LQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 575 LQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred hHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 6777888887777777888888876543
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.3e-08 Score=124.14 Aligned_cols=341 Identities=18% Similarity=0.224 Sum_probs=193.1
Q ss_pred CCCCHHHHHHHHH---HhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc-CCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1340 KHFNPIQTQVFTV---LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~---l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~-~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
..++++|.+-++- +++.+-|.|+.-.-|=|||+.. ++++.++.... ..| .-+||+|.-.|- .+.++++ +|.
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~~~G--PfLVi~P~StL~-NW~~Ef~-rf~ 240 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKGIPG--PFLVIAPKSTLD-NWMNEFK-RFT 240 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcCCCC--CeEEEeeHhhHH-HHHHHHH-HhC
Confidence 4788999887665 5677888999999999999876 45555554422 233 578999986654 4555565 455
Q ss_pred CCCCcEEEEEcCCcchhhh----ccc--CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHH
Q 000114 1416 QGLGMRVVELTGETAMDLK----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVS 1489 (2158)
Q Consensus 1416 ~~~g~~v~~ltG~~~~~~~----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~is 1489 (2158)
+ ++++..+.|+...... .+. .-+|+|+|.|....--.- ..--..+++||||||+|-... +
T Consensus 241 P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~----lk~~~W~ylvIDEaHRiKN~~--------s 306 (971)
T KOG0385|consen 241 P--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSF----LKKFNWRYLVIDEAHRIKNEK--------S 306 (971)
T ss_pred C--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHH----HhcCCceEEEechhhhhcchh--------h
Confidence 4 7899999998754422 222 349999999986432111 111346899999999997543 2
Q ss_pred HHHHHHhhcCCCceEEEeccCCCC-------------------hHHHHHHhccCCCceEecCCCCcccccEEEEeccccc
Q 000114 1490 RMRYIASQVENKIRIVALSTSLAN-------------------AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIT 1550 (2158)
Q Consensus 1490 rl~~i~~~~~~~~riV~lSATl~n-------------------~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~ 1550 (2158)
++..+.+.+...-|+++..+++.| ++++..|+..... ....
T Consensus 307 ~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~--------------------~~~~ 366 (971)
T KOG0385|consen 307 KLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNC--------------------EGDQ 366 (971)
T ss_pred HHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHccccc--------------------ccCH
Confidence 222333334445565554444444 2344555543210 0000
Q ss_pred chHHHHHhcChHHH-----HHHHHhHhcCCCEEEEecChHH--------------------------HHHHHHHHHhhcc
Q 000114 1551 NFEARMQAMTKPTF-----TAIVQHAKNEKPALVFVPSRKY--------------------------VRLTAVDLMTYSS 1599 (2158)
Q Consensus 1551 ~~~~~~~~~~k~~~-----~~i~~~~~~~~~~IVFv~sr~~--------------------------~~~~a~~L~~~~~ 1599 (2158)
....++....+|.. ..+...+.+.+-++|||+-... -..+...|...|.
T Consensus 367 e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccn 446 (971)
T KOG0385|consen 367 ELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCN 446 (971)
T ss_pred HHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcC
Confidence 01111111111111 1111111223334555543222 2233333333332
Q ss_pred cC----Cccc-ccccCCC--------cccchhhHhhhhH------------------HHHHHHhcccEEEecCCCCHHHH
Q 000114 1600 MD----GDQK-SAFLLWP--------AEEVEPFIDNIQE------------------EMLKATLRHGVGYLHEGLNKTDQ 1648 (2158)
Q Consensus 1600 ~~----~~~~-~~~l~~~--------~~~l~~~~~~i~d------------------~~L~~~l~~gv~~~H~~l~~~dR 1648 (2158)
-. +... ..|.... -.-+..++.++.+ +.....-++...-+.|.++.++|
T Consensus 447 HPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR 526 (971)
T KOG0385|consen 447 HPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEER 526 (971)
T ss_pred CccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHH
Confidence 10 0000 0011000 0012222222211 11122234556777899999999
Q ss_pred HHHHHHHHcC---CceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEe
Q 000114 1649 EVVSALFEAG---KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2158)
Q Consensus 1649 ~~v~~~F~~g---~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~ 1725 (2158)
...++.|... +.-.|++|.+.+-|||+-+..+|| .|| .|.++..=+|-+-||.|-|..+.-.++-++
T Consensus 527 ~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVI----lyD------SDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLi 596 (971)
T KOG0385|consen 527 EDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVI----LYD------SDWNPQVDLQAMDRAHRIGQKKPVVVYRLI 596 (971)
T ss_pred HHHHHhcCCCCcceEEEEEeccccccccccccccEEE----Eec------CCCCchhhhHHHHHHHhhCCcCceEEEEEe
Confidence 9999999854 456899999999999999877777 344 444566668888899998878888889888
Q ss_pred cCCh
Q 000114 1726 HAPR 1729 (2158)
Q Consensus 1726 ~~~~ 1729 (2158)
....
T Consensus 597 tent 600 (971)
T KOG0385|consen 597 TENT 600 (971)
T ss_pred ccch
Confidence 8874
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.5e-08 Score=130.01 Aligned_cols=128 Identities=20% Similarity=0.119 Sum_probs=85.1
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.+.++|--.--.+ +.+ -|.-+.||=|||+++.+|+.-.... +. .+-+++..--||..=++.+. .+-..+|+
T Consensus 78 r~ydVQliGglvL-h~G--~IAEMkTGEGKTLvAtLpayLnAL~---Gk--gVhVVTvNdYLA~RDae~mg-~vy~fLGL 148 (925)
T PRK12903 78 RPYDVQIIGGIIL-DLG--SVAEMKTGEGKTITSIAPVYLNALT---GK--GVIVSTVNEYLAERDAEEMG-KVFNFLGL 148 (925)
T ss_pred CcCchHHHHHHHH-hcC--CeeeecCCCCccHHHHHHHHHHHhc---CC--ceEEEecchhhhhhhHHHHH-HHHHHhCC
Confidence 4555555444333 323 4789999999999999988644433 33 46677777788876666555 44445799
Q ss_pred EEEEEcCCcchh-hhcccCCcEEEeCHHHHH-HHHhhh----hccccccceeEEEeccccccc
Q 000114 1421 RVVELTGETAMD-LKLLEKGQIIISTPEKWD-ALSRRW----KQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1421 ~v~~ltG~~~~~-~~~l~~~~IIV~TPe~l~-~l~r~~----~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
+|+....+.... .+..-.++|.++|...+- +.+|-. ......+.+.+.||||+|.++
T Consensus 149 svG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 149 SVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred ceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 999998876554 445557899999988762 244421 112234668899999999654
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.5e-08 Score=131.15 Aligned_cols=127 Identities=19% Similarity=0.082 Sum_probs=87.8
Q ss_pred CCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcE
Q 000114 1342 FNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMR 1421 (2158)
Q Consensus 1342 ~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~ 1421 (2158)
++++|--. .+.- .+.-|+.+.||.|||+++.+|+.-.... +. .+-+|+++..||.+-++.+.. +-..+|++
T Consensus 77 ~ydvQlig--~l~L-~~G~IaEm~TGEGKTL~a~l~ayl~aL~---G~--~VhVvT~NdyLA~RD~e~m~p-vy~~LGLs 147 (870)
T CHL00122 77 HFDVQLIG--GLVL-NDGKIAEMKTGEGKTLVATLPAYLNALT---GK--GVHIVTVNDYLAKRDQEWMGQ-IYRFLGLT 147 (870)
T ss_pred CCchHhhh--hHhh-cCCccccccCCCCchHHHHHHHHHHHhc---CC--ceEEEeCCHHHHHHHHHHHHH-HHHHcCCc
Confidence 44555444 4322 2336899999999999999988533322 33 688999999999998887774 44457999
Q ss_pred EEEEcCCcchh-hhcccCCcEEEeCHHHHH-HHHhhhh----ccccccceeEEEeccccccc
Q 000114 1422 VVELTGETAMD-LKLLEKGQIIISTPEKWD-ALSRRWK----QRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1422 v~~ltG~~~~~-~~~l~~~~IIV~TPe~l~-~l~r~~~----~~~~l~~v~llIiDEaH~l~ 1477 (2158)
|+...++.+.. .+..-.++|+++|...+- +.+|-.. .....+.+.+.||||||.++
T Consensus 148 vg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 148 VGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred eeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 99998877665 344556799999987552 2333211 11234568899999999553
|
|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-09 Score=138.31 Aligned_cols=338 Identities=17% Similarity=0.160 Sum_probs=203.3
Q ss_pred HHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEE
Q 000114 505 KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVREL 584 (2158)
Q Consensus 505 ~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l 584 (2158)
-.+...++.+++-+.||+|||..+..-||..+..+... ..+-+++-.|++--+.-+++++.+-- +-.++..
T Consensus 387 ~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g------~~~na~v~qprrisaisiaerva~er---~e~~g~t 457 (1282)
T KOG0921|consen 387 LQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNG------ASFNAVVSQPRRISAISLAERVANER---GEEVGET 457 (1282)
T ss_pred HHHHhcCceeeEeecccccchhHHHHHHHHHHhhcccc------ccccceeccccccchHHHHHHHHHhh---HHhhccc
Confidence 34455667789999999999999999999998875431 33468888999998888888776421 1122222
Q ss_pred eCCCccCHh--hhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhcccccc
Q 000114 585 SGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIR 662 (2158)
Q Consensus 585 ~Gd~~~~~~--~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~r 662 (2158)
.|-...-.. ....--|..||-+ .+.|..- .-+..+.++|+||+|.-- +--.++..+++-+..+.+.++
T Consensus 458 vgy~vRf~Sa~prpyg~i~fctvg---vllr~~e--~glrg~sh~i~deiherd-----v~~dfll~~lr~m~~ty~dl~ 527 (1282)
T KOG0921|consen 458 CGYNVRFDSATPRPYGSIMFCTVG---VLLRMME--NGLRGISHVIIDEIHERD-----VDTDFVLIVLREMISTYRDLR 527 (1282)
T ss_pred ccccccccccccccccceeeeccc---hhhhhhh--hcccccccccchhhhhhc-----cchHHHHHHHHhhhccchhhh
Confidence 221110000 0123458889988 4444432 345568899999999631 222233344455556778899
Q ss_pred EEEEccccCChHHHHHHHhccccCce------------------------------EEecCCccccccee--EEEe-ecc
Q 000114 663 LVGLSATLPNYEDVALFLRVNLEKGL------------------------------FYFDNSYRPVPLSQ--QYIG-IQV 709 (2158)
Q Consensus 663 iv~lSATlpn~~dv~~~l~~~~~~~~------------------------------~~f~~~~rpv~l~~--~~~~-~~~ 709 (2158)
++++|||+ |.+-+..|++.-+...+ ..+...+.+.+... .-.+ ...
T Consensus 528 v~lmsatI-dTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~d 606 (1282)
T KOG0921|consen 528 VVLMSATI-DTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCD 606 (1282)
T ss_pred hhhhhccc-chhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccC
Confidence 99999997 44556666654321100 00111111111000 0000 000
Q ss_pred CCh-hHHHHHhh--------HHHHHHHHHHhC----CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHH
Q 000114 710 KKP-LQRFQLMN--------DLCYEKVVAVAG----KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREI 776 (2158)
Q Consensus 710 ~~~-~~~~~~l~--------~~~~~~i~~~~~----~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~ 776 (2158)
... .....+|. .-+.+++..... .+-++||.+.-.....+..++.......
T Consensus 607 d~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg---------------- 670 (1282)
T KOG0921|consen 607 PSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFG---------------- 670 (1282)
T ss_pred hhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhc----------------
Confidence 000 00000000 001122222111 4678999999888888877776542211
Q ss_pred HHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCC----
Q 000114 777 LQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE---- 852 (2158)
Q Consensus 777 l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~---- 852 (2158)
++-.+-+.-.|+.+...++..|.+....|..+++++|.++...+.+-++..||.....|-.-
T Consensus 671 --------------~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~ 736 (1282)
T KOG0921|consen 671 --------------QANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSH 736 (1282)
T ss_pred --------------cchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccc
Confidence 11123344459999999999999999999999999999999999999988887754433111
Q ss_pred ----CCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHH
Q 000114 853 ----KGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 853 ----~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (2158)
.....+.|.....||.||+||. +.|.|..+|+.-..+.+.
T Consensus 737 nn~~~~Atvw~sktn~eqr~gr~grv---R~G~~f~lcs~arF~~l~ 780 (1282)
T KOG0921|consen 737 NNMTHYATVWASKTNLEQRKGRAGRV---RPGFCFHLCSRARFEALE 780 (1282)
T ss_pred cceeeeeeecccccchHhhcccCcee---cccccccccHHHHHHHHH
Confidence 1123677888999999999995 578899888875554443
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.3e-08 Score=133.85 Aligned_cols=74 Identities=20% Similarity=0.261 Sum_probs=60.7
Q ss_pred CCCCCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVG 568 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~ 568 (2158)
.|..++|.|.+.+..+ +..++++++.||||+|||++.+.+.+....... ...||+|.+.|.+=..|..+
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~--------~~~kIiy~sRThsQl~q~i~ 78 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP--------EVRKIIYASRTHSQLEQATE 78 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc--------ccccEEEEcccchHHHHHHH
Confidence 4778899999988765 456778999999999999999999998766432 23489999999988888888
Q ss_pred HHHhh
Q 000114 569 NLSNR 573 (2158)
Q Consensus 569 ~~~~~ 573 (2158)
++++.
T Consensus 79 Elk~~ 83 (705)
T TIGR00604 79 ELRKL 83 (705)
T ss_pred HHHhh
Confidence 88773
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.8e-08 Score=130.11 Aligned_cols=112 Identities=17% Similarity=0.110 Sum_probs=82.4
Q ss_pred EEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchh-hhcccC
Q 000114 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD-LKLLEK 1438 (2158)
Q Consensus 1360 vli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~-~~~l~~ 1438 (2158)
-|..+.||-|||+++.+|+.-.... +. .+-+|+++.-||..=++.+. .+-..+|++|+...++.... .+..-.
T Consensus 101 ~IAEM~TGEGKTL~atlpaylnAL~---Gk--gVhVVTvNdYLA~RDae~m~-~vy~~LGLtvg~i~~~~~~~err~aY~ 174 (939)
T PRK12902 101 QIAEMKTGEGKTLVATLPSYLNALT---GK--GVHVVTVNDYLARRDAEWMG-QVHRFLGLSVGLIQQDMSPEERKKNYA 174 (939)
T ss_pred ceeeecCCCChhHHHHHHHHHHhhc---CC--CeEEEeCCHHHHHhHHHHHH-HHHHHhCCeEEEECCCCChHHHHHhcC
Confidence 5889999999999999988754443 33 57899999999998887666 44455799999998876654 445567
Q ss_pred CcEEEeCHHHH-HHHHhh-h---hccccccceeEEEeccccccc
Q 000114 1439 GQIIISTPEKW-DALSRR-W---KQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1439 ~~IIV~TPe~l-~~l~r~-~---~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
+||+++|+..+ .+.+|- . ......+.+.+.||||||.++
T Consensus 175 ~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 175 CDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred CCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 89999999887 112221 1 112245678899999999653
|
|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.9e-09 Score=133.23 Aligned_cols=417 Identities=17% Similarity=0.155 Sum_probs=243.4
Q ss_pred cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh
Q 000114 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK 1434 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~ 1434 (2158)
..++.++|-+.||+|||.-++--||..+.+........+++-.|++-.+..+++++.+.-+...| ...|-...-..
T Consensus 391 ~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g----~tvgy~vRf~S 466 (1282)
T KOG0921|consen 391 AENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVG----ETCGYNVRFDS 466 (1282)
T ss_pred hcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhc----ccccccccccc
Confidence 34677999999999999999999999999865555556888899998888888877654433222 22222111111
Q ss_pred cc--cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCC
Q 000114 1435 LL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2158)
Q Consensus 1435 ~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~ 1512 (2158)
.. ...-|..+|-+-+....- .-+..+.++|+||+|... -.+..+..++.-|..+ -..++++++|||+
T Consensus 467 a~prpyg~i~fctvgvllr~~e-----~glrg~sh~i~deiherd-v~~dfll~~lr~m~~t----y~dl~v~lmsatI- 535 (1282)
T KOG0921|consen 467 ATPRPYGSIMFCTVGVLLRMME-----NGLRGISHVIIDEIHERD-VDTDFVLIVLREMIST----YRDLRVVLMSATI- 535 (1282)
T ss_pred cccccccceeeeccchhhhhhh-----hcccccccccchhhhhhc-cchHHHHHHHHhhhcc----chhhhhhhhhccc-
Confidence 11 233799999887554432 246778999999999763 2344444455445443 3578889999998
Q ss_pred ChHHHHHHhccCCCceE-------------------ecCCCCcccccEEEE-ecc---------------cccchHHH-H
Q 000114 1513 NAKDLGEWIGATSHGLF-------------------NFPPGVRPVPLEIHI-QGV---------------DITNFEAR-M 1556 (2158)
Q Consensus 1513 n~~dl~~wl~~~~~~i~-------------------~f~~~~rpv~l~~~i-~~~---------------~~~~~~~~-~ 1556 (2158)
|.+-+..+++.-+..+. .|-|. ++.+..... ..+ ..+.+... .
T Consensus 536 dTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~-~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~ 614 (1282)
T KOG0921|consen 536 DTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPS-EPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTR 614 (1282)
T ss_pred chhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCC-CcCccchhhcccccCchhhhcccccccccChhhcchhh
Confidence 55556666654322110 00000 010100000 000 00000000 0
Q ss_pred HhcC--------hHHHHHHHHhHh---cCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhH
Q 000114 1557 QAMT--------KPTFTAIVQHAK---NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQE 1625 (2158)
Q Consensus 1557 ~~~~--------k~~~~~i~~~~~---~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d 1625 (2158)
.+|. -.+.+++..++. -.+-++||.+.-.....+...+..+
T Consensus 615 ~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~---------------------------- 666 (1282)
T KOG0921|consen 615 TAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEH---------------------------- 666 (1282)
T ss_pred hhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhh----------------------------
Confidence 0111 011222222211 1345788888776665555444221
Q ss_pred HHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEeccee---ecCC----CC-cCcC
Q 000114 1626 EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQY---YDGQ----EN-AHTD 1697 (2158)
Q Consensus 1626 ~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~---yd~~----~~-~~~~ 1697 (2158)
....+.-.+.+...|+.+...+++.|.+....|..+++++|.++...+.+.++..||....- +..+ .+ ..+.
T Consensus 667 ~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw 746 (1282)
T KOG0921|consen 667 QEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVW 746 (1282)
T ss_pred hhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeec
Confidence 22333445668889999999999999999999999999999999999999987777633221 1111 11 2456
Q ss_pred CCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhhCCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHh
Q 000114 1698 YPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWT 1777 (2158)
Q Consensus 1698 ~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t 1777 (2158)
.+.....|+.||+||. +.|.|+.+|.....+.+..-... .+..+-..|++.- + ..+...+-.
T Consensus 747 ~sktn~eqr~gr~grv---R~G~~f~lcs~arF~~l~~~~t~----------em~r~plhemalT-i----kll~l~SI~ 808 (1282)
T KOG0921|consen 747 ASKTNLEQRKGRAGRV---RPGFCFHLCSRARFEALEDHGTA----------EMFRTPLHEIALT-I----KLLRLGSIG 808 (1282)
T ss_pred ccccchHhhcccCcee---cccccccccHHHHHHHHHhcCcH----------hhhcCccHHHHhh-H----HHHHhhhHH
Confidence 6788999999999994 79999999987654443322211 0111111111110 0 001111212
Q ss_pred hhhhhhccCCCCccCCCCCcccHHHHHHHHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHh
Q 000114 1778 FMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSS 1853 (2158)
Q Consensus 1778 ~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~ 1853 (2158)
.|.-.-.+.|.| +.|+.+-..|...+|....+ ..|++|+..+...+.+.-..++..
T Consensus 809 ~fl~kal~~~p~----------------dav~e~e~~l~~m~~ld~n~----elt~lg~~la~l~iep~~~k~~~l 864 (1282)
T KOG0921|consen 809 EFLGKALQPPPY----------------DAVIEAEAVLREMGALDAND----ELTPLGRMLARLPIEPRIGKMMIL 864 (1282)
T ss_pred HHHhhccCCCch----------------hhccCchHHHHHhhhhhccC----cccchhhhhhhccCcccccceeee
Confidence 222222233333 56666677788888886544 357889999999998887766654
|
|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-07 Score=123.61 Aligned_cols=366 Identities=17% Similarity=0.129 Sum_probs=207.9
Q ss_pred CCCCHHHHHHHHHHHcC---C------CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHH
Q 000114 494 TQLNRVQSRVYKSALSS---A------DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~---~------~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~ 564 (2158)
..++|+|.+.+.-++.. . .-.|+.=..|+|||+..+-.|.-.+.+++.... ---|.|||+|. .|+.
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~----~~~k~lVV~P~-sLv~ 311 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKP----LINKPLVVAPS-SLVN 311 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccc----cccccEEEccH-HHHH
Confidence 47899999999876532 1 125666778999999887777667776654211 11379999995 8999
Q ss_pred HHHHHHHhhcccCCcEEEEEeCCCccCH---h-------hhccccEEEcchhHHHHHHhccCCCccccccceEEeecccc
Q 000114 565 EVVGNLSNRLQMYDVKVRELSGDQTLTR---Q-------QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 565 q~~~~~~~~~~~~gi~v~~l~Gd~~~~~---~-------~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
-+.++|.+++....+.+..+.|...... + ..-.+.|++.+.|.+....+. .....++++|+||.|.
T Consensus 312 nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~----il~~~~glLVcDEGHr 387 (776)
T KOG0390|consen 312 NWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK----ILLIRPGLLVCDEGHR 387 (776)
T ss_pred HHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH----HhcCCCCeEEECCCCC
Confidence 9999999988765677777777665310 0 112456778888876322222 3456689999999999
Q ss_pred cccCChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhc---cccCceEEecCCcccc----cceeEE--E
Q 000114 635 LHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV---NLEKGLFYFDNSYRPV----PLSQQY--I 705 (2158)
Q Consensus 635 l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~---~~~~~~~~f~~~~rpv----~l~~~~--~ 705 (2158)
+-......+.++ +++ .-.|-|+||.|+- ..++.++... .. .+..--..+++-. .+...- .
T Consensus 388 lkN~~s~~~kaL-~~l--------~t~rRVLLSGTp~-QNdl~EyFnlL~fvr-P~~Lgs~~sf~k~~~~~i~~~~~~~~ 456 (776)
T KOG0390|consen 388 LKNSDSLTLKAL-SSL--------KTPRRVLLTGTPI-QNDLKEYFNLLDFVR-PGFLGSISSFKKKFEIPILRGRDADA 456 (776)
T ss_pred ccchhhHHHHHH-Hhc--------CCCceEEeeCCcc-cccHHHHHHHHhhcC-hhhccchHHHHHHhhcccccccCCCc
Confidence 865544333332 222 2345689999954 2344444432 11 1111111111110 000000 0
Q ss_pred eeccCChhHHHHHhhHHHHHH--------HHHHhCC-CeEEEEecChHHHHHHHHHHHHHh---------hcc-------
Q 000114 706 GIQVKKPLQRFQLMNDLCYEK--------VVAVAGK-HQVLIFVHSRKETAKTARAIRDTA---------LEN------- 760 (2158)
Q Consensus 706 ~~~~~~~~~~~~~l~~~~~~~--------i~~~~~~-~~vLVFv~sr~~~~~~a~~L~~~~---------~~~------- 760 (2158)
.-.......+++.|..++-.. +.+.+++ .-.+|||+.-..=..++..|.+.. ...
T Consensus 457 s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~ 536 (776)
T KOG0390|consen 457 SEEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKL 536 (776)
T ss_pred chhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHH
Confidence 000001122334344333222 2233333 357889987655555555444420 000
Q ss_pred cccccccc------------------------cC--chh--H------HHHHhhhhcc-------Cc--------chhhh
Q 000114 761 DTLGRFLK------------------------ED--SVS--R------EILQSHTDMV-------KS--------NDLKD 791 (2158)
Q Consensus 761 ~~~~~~~~------------------------~~--~~~--~------~~l~~~~~~~-------~~--------~~l~~ 791 (2158)
..-..++. .+ ..+ . .++....+.. .+ ..+..
T Consensus 537 cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~ 616 (776)
T KOG0390|consen 537 CNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCR 616 (776)
T ss_pred hcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHh
Confidence 00000000 00 000 0 0000000000 00 11222
Q ss_pred hccCCeEEecCCCCHHHHHHHHHHHhCCCc--e-EEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhh
Q 000114 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHV--Q-VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (2158)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F~~g~i--~-VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~ 868 (2158)
...+.+...||.|+..+|..+.+.|.+..- . .|.+|-+.+.|+||=+.+-||.++..|||. .=.|.+
T Consensus 617 ~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa----------~d~QAm 686 (776)
T KOG0390|consen 617 WRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPA----------VDQQAM 686 (776)
T ss_pred hcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCch----------hHHHHH
Confidence 335678888999999999999999986432 3 457788999999999998888877777765 468999
Q ss_pred cccCCCCCCCccEEEEEcCCC
Q 000114 869 GRAGRPQYDSYGEGIIITGHS 889 (2158)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~ 889 (2158)
+||=|+|.-+.-.+|-+....
T Consensus 687 aR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 687 ARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred HHhccCCCcceEEEEEeecCC
Confidence 999999976666666665553
|
|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.1e-07 Score=114.16 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=101.6
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
+..|-|+|.+-+..+++.+..+++.-.-|-|||..|+ +|....... .-.++|+|- +|-..+.+.+.+
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAl-aIA~yyraE-----------wplliVcPA-svrftWa~al~r 262 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQAL-AIARYYRAE-----------WPLLIVCPA-SVRFTWAKALNR 262 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHH-HHHHHHhhc-----------CcEEEEecH-HHhHHHHHHHHH
Confidence 3467899999999999998899999999999999885 444443321 148889996 455667777777
Q ss_pred hcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHH
Q 000114 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (2158)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~ 652 (2158)
++... ..+....+..+.-...-....|.|.+.+.+..+-.... -...++||+||.|+|.+.+......++.-
T Consensus 263 ~lps~-~pi~vv~~~~D~~~~~~t~~~v~ivSye~ls~l~~~l~----~~~~~vvI~DEsH~Lk~sktkr~Ka~~dl--- 334 (689)
T KOG1000|consen 263 FLPSI-HPIFVVDKSSDPLPDVCTSNTVAIVSYEQLSLLHDILK----KEKYRVVIFDESHMLKDSKTKRTKAATDL--- 334 (689)
T ss_pred hcccc-cceEEEecccCCccccccCCeEEEEEHHHHHHHHHHHh----cccceEEEEechhhhhccchhhhhhhhhH---
Confidence 76543 23444444443322222345688888887644433222 22368999999999987554333333322
Q ss_pred HHhhccccccEEEEccccC
Q 000114 653 QIETTKEHIRLVGLSATLP 671 (2158)
Q Consensus 653 ~~~~~~~~~riv~lSATlp 671 (2158)
...-.++|+||.|..
T Consensus 335 ----lk~akhvILLSGTPa 349 (689)
T KOG1000|consen 335 ----LKVAKHVILLSGTPA 349 (689)
T ss_pred ----HHHhhheEEecCCcc
Confidence 234567899999943
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-09 Score=105.50 Aligned_cols=72 Identities=32% Similarity=0.583 Sum_probs=64.3
Q ss_pred cCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCC
Q 000114 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2158)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2158)
...+..+||+|+..+|..+++.|++|...|||+|+++++|+|+|.++.||. ++++ .+..+|.||+||+||
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~----~~~~------~~~~~~~Q~~gR~~R 80 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVII----YDLP------WSPASYIQRIGRAGR 80 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEE----eCCC------CCHHHHHHhhccccc
Confidence 466889999999999999999999999999999999999999999988887 4443 277789999999999
Q ss_pred CC
Q 000114 874 PQ 875 (2158)
Q Consensus 874 ~g 875 (2158)
.|
T Consensus 81 ~g 82 (82)
T smart00490 81 AG 82 (82)
T ss_pred CC
Confidence 64
|
|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.7e-07 Score=122.57 Aligned_cols=360 Identities=17% Similarity=0.125 Sum_probs=187.1
Q ss_pred CCCCCHHHHHHHHHHhcC---C------CcEEEEccCCchhHHHHHHHHHHHHHhhcCC-----CceEEEEEcccHHHHH
Q 000114 1339 FKHFNPIQTQVFTVLYNT---D------DNVLVAAPTGSGKTICSEFAILRNHQKASET-----GVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~---~------~nvli~ApTGSGKTl~a~l~il~~l~~~~~~-----~~~~~v~IaP~raLa~ 1404 (2158)
...++|+|++.|.-++.. . .-.|++=..|+|||+...-.|...+.+ .+. . +++||+|. .|+.
T Consensus 236 ~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq-~P~~~~~~~--k~lVV~P~-sLv~ 311 (776)
T KOG0390|consen 236 KKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQ-FPQAKPLIN--KPLVVAPS-SLVN 311 (776)
T ss_pred hhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHh-CcCcccccc--ccEEEccH-HHHH
Confidence 357899999999998751 1 126677778999999885555555555 455 4 88999996 5655
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcch-h--hh-------cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccc
Q 000114 1405 ERYRDWEIKFGQGLGMRVVELTGETAM-D--LK-------LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 1474 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~ltG~~~~-~--~~-------~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH 1474 (2158)
-++++|.+..+. ..+....+.|.... . .+ ..-...|.+.+-|.+....+. .....++++|+||.|
T Consensus 312 nWkkEF~KWl~~-~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~----il~~~~glLVcDEGH 386 (776)
T KOG0390|consen 312 NWKKEFGKWLGN-HRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK----ILLIRPGLLVCDEGH 386 (776)
T ss_pred HHHHHHHHhccc-cccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH----HhcCCCCeEEECCCC
Confidence 555555544332 12344445554442 1 00 111225777777776544433 346789999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCC-C-hHHHHHHhccCCCceEecCCCCcccccEEEEeccccc--
Q 000114 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA-N-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIT-- 1550 (2158)
Q Consensus 1475 ~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~-n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~-- 1550 (2158)
.+-...+ .+......+.. .|-|+||.|+- | ..++-.-|+....+++.-....+-.--.....+-+..
T Consensus 387 rlkN~~s--------~~~kaL~~l~t-~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s 457 (776)
T KOG0390|consen 387 RLKNSDS--------LTLKALSSLKT-PRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADAS 457 (776)
T ss_pred Cccchhh--------HHHHHHHhcCC-CceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcc
Confidence 8865432 22222223333 45577788863 2 3333332322211111100000000000000000000
Q ss_pred ----chHHH---HHhcChHH-----HHHHHHhHhcCC-CEEEEecChHHHHHHHHHHHhh--------------------
Q 000114 1551 ----NFEAR---MQAMTKPT-----FTAIVQHAKNEK-PALVFVPSRKYVRLTAVDLMTY-------------------- 1597 (2158)
Q Consensus 1551 ----~~~~~---~~~~~k~~-----~~~i~~~~~~~~-~~IVFv~sr~~~~~~a~~L~~~-------------------- 1597 (2158)
....+ +..|.... -..+..+ -|+. -.+|||+.-..=..+...|...
T Consensus 458 ~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~-LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~ 536 (776)
T KOG0390|consen 458 EEDREREERLQELRELTNKFILRRTGDILLKY-LPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKL 536 (776)
T ss_pred hhhhhhHHHHHHHHHHHHhheeecccchhhhh-CCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHH
Confidence 00111 11111100 0111122 2333 3788888654444444433332
Q ss_pred cc---c---CCc--ccccccC-----------CCcc---------cchhhHhhhhH-------------------HHHHH
Q 000114 1598 SS---M---DGD--QKSAFLL-----------WPAE---------EVEPFIDNIQE-------------------EMLKA 1630 (2158)
Q Consensus 1598 ~~---~---~~~--~~~~~l~-----------~~~~---------~l~~~~~~i~d-------------------~~L~~ 1630 (2158)
|. . .+. ...++.. .... .+...+..+.. +.+..
T Consensus 537 cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~ 616 (776)
T KOG0390|consen 537 CNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCR 616 (776)
T ss_pred hcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHh
Confidence 00 0 000 0000000 0000 00111111110 12333
Q ss_pred HhcccEEEecCCCCHHHHHHHHHHHHcCCc--e-EEEecCccccccCCC-ccEEEEecceeecCCCCcCcCCCHHHHHHh
Q 000114 1631 TLRHGVGYLHEGLNKTDQEVVSALFEAGKI--K-VCVMSSSMCWGVPLT-AHLVVVMGTQYYDGQENAHTDYPVTDLLQM 1706 (2158)
Q Consensus 1631 ~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i--~-VLVaT~~la~Gvdlp-~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr 1706 (2158)
..++.+..+||.|+..+|..+.+.|.+..- . .|.+|.+.+.|||+- +-++|+ .+.+.+++.=.|-
T Consensus 617 ~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil-----------~D~dWNPa~d~QA 685 (776)
T KOG0390|consen 617 WRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL-----------FDPDWNPAVDQQA 685 (776)
T ss_pred hcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE-----------eCCCCCchhHHHH
Confidence 347789999999999999999999986432 3 556677889999987 455555 3445567777999
Q ss_pred hccCCCCCCCCceEEEEEecCC
Q 000114 1707 MGHASRPLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1707 ~GRaGR~g~d~~G~~iil~~~~ 1728 (2158)
++||=|+|..+.-.+|-|....
T Consensus 686 maR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 686 MARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred HHHhccCCCcceEEEEEeecCC
Confidence 9999999977777777666654
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.5e-09 Score=100.73 Aligned_cols=72 Identities=28% Similarity=0.364 Sum_probs=63.9
Q ss_pred cccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCC
Q 000114 1633 RHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2158)
Q Consensus 1633 ~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR 1712 (2158)
+..+..+||+++..+|..+++.|.+|...|||+|+++++|+|+|.+..|| ....+++..+|.||+||++|
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi----------~~~~~~~~~~~~Q~~gR~~R 80 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVI----------IYDLPWSPASYIQRIGRAGR 80 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEE----------EeCCCCCHHHHHHhhccccc
Confidence 66799999999999999999999999999999999999999999766665 12346789999999999999
Q ss_pred CC
Q 000114 1713 PL 1714 (2158)
Q Consensus 1713 ~g 1714 (2158)
.|
T Consensus 81 ~g 82 (82)
T smart00490 81 AG 82 (82)
T ss_pred CC
Confidence 64
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.5e-07 Score=120.29 Aligned_cols=303 Identities=14% Similarity=0.161 Sum_probs=162.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCcc
Q 000114 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~ 590 (2158)
+.-.+|-||.|||||.+..-++-..+.. .+.++++|+.+++|+.+...+|+...- .|+....-.++...
T Consensus 49 ~~V~vVRSpMGTGKTtaLi~wLk~~l~~----------~~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv~Y~d~~~~~i 117 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTALIRWLKDALKN----------PDKSVLVVSHRRSLTKSLAERFKKAGL-SGFVNYLDSDDYII 117 (824)
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHhccC----------CCCeEEEEEhHHHHHHHHHHHHhhcCC-Ccceeeeccccccc
Confidence 3447899999999998765444333221 345899999999999999999976421 13222211122111
Q ss_pred CHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccC-ChhhH---HHHHHHHHHHHhhccccccEEEE
Q 000114 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVL---ESIVARTVRQIETTKEHIRLVGL 666 (2158)
Q Consensus 591 ~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~-rg~~l---e~iv~r~~~~~~~~~~~~riv~l 666 (2158)
.. ...+-+++..+ ++-|... ..+.++++|||||+-.+... +.+.+ +.+.+.+... .....++|++
T Consensus 118 ~~---~~~~rLivqId---SL~R~~~--~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~l---I~~ak~VI~~ 186 (824)
T PF02399_consen 118 DG---RPYDRLIVQID---SLHRLDG--SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKEL---IRNAKTVIVM 186 (824)
T ss_pred cc---cccCeEEEEeh---hhhhccc--ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHH---HHhCCeEEEe
Confidence 11 12455555555 4544443 45677999999999754331 22222 2222222222 2345689999
Q ss_pred ccccCChHHHHHHHh-ccccCceEEecCCcccccceeEEEeecc-------------C--Ch--------------hHHH
Q 000114 667 SATLPNYEDVALFLR-VNLEKGLFYFDNSYRPVPLSQQYIGIQV-------------K--KP--------------LQRF 716 (2158)
Q Consensus 667 SATlpn~~dv~~~l~-~~~~~~~~~f~~~~rpv~l~~~~~~~~~-------------~--~~--------------~~~~ 716 (2158)
-||+.+ ..-+|+. ..+...+.++.++|.......+...+-. . .. ....
T Consensus 187 DA~ln~--~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (824)
T PF02399_consen 187 DADLND--QTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAI 264 (824)
T ss_pred cCCCCH--HHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCcccccccc
Confidence 999973 3334443 2233444444444332211111100000 0 00 0000
Q ss_pred HHhhHHHHHHHHHH-hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccC
Q 000114 717 QLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPY 795 (2158)
Q Consensus 717 ~~l~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~ 795 (2158)
..-....+..+... ..++.+-||++|...++.+++...... .
T Consensus 265 ~~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~-------------------------------------~ 307 (824)
T PF02399_consen 265 SNDETTFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFT-------------------------------------K 307 (824)
T ss_pred ccchhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcC-------------------------------------C
Confidence 00001123333333 337788899999888877776655431 2
Q ss_pred CeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEE--EEecccccCCCCCccccCCHHHHHHhhcccCC
Q 000114 796 GFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTV--IIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2158)
Q Consensus 796 gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~v--VI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2158)
.|..+++.-+.. .++. =++.+|++=|+++..|+++-.... +.-+-.+.. .| -+..+..||+||.-.
T Consensus 308 ~Vl~l~s~~~~~---dv~~---W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~--~g----pd~~s~~Q~lgRvR~ 375 (824)
T PF02399_consen 308 KVLVLNSTDKLE---DVES---WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMS--YG----PDMVSVYQMLGRVRS 375 (824)
T ss_pred eEEEEcCCCCcc---cccc---ccceeEEEEeceEEEEeccchhhceEEEEEecCCC--CC----CcHHHHHHHHHHHHh
Confidence 244455544333 2221 357899999999999999854322 332211111 11 155679999999977
Q ss_pred CCCCCccEEEEEcCCC
Q 000114 874 PQYDSYGEGIIITGHS 889 (2158)
Q Consensus 874 ~g~d~~G~~iil~~~~ 889 (2158)
.. ..+.++.++..
T Consensus 376 l~---~~ei~v~~d~~ 388 (824)
T PF02399_consen 376 LL---DNEIYVYIDAS 388 (824)
T ss_pred hc---cCeEEEEEecc
Confidence 53 35666666654
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.8e-06 Score=107.99 Aligned_cols=356 Identities=17% Similarity=0.195 Sum_probs=189.1
Q ss_pred CCCCCHHHHHHHHHHh---cCCCcEEEEccCCchhHHH--HHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHH
Q 000114 1339 FKHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTIC--SEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIK 1413 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~---~~~~nvli~ApTGSGKTl~--a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~ 1413 (2158)
+..+.|+|+..+.-++ ..+.--|++-.-|=|||+. +.|+.+.+-.. -.+ .+|||||. .++.|+.++|...
T Consensus 203 ~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k--~~~--paLIVCP~-Tii~qW~~E~~~w 277 (923)
T KOG0387|consen 203 WSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGK--LTK--PALIVCPA-TIIHQWMKEFQTW 277 (923)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhccc--ccC--ceEEEccH-HHHHHHHHHHHHh
Confidence 4577899999887764 3444578999999999954 44555544322 124 79999997 6788999999854
Q ss_pred hcCCCCcEEEEEcCCcch------------h----hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccccc
Q 000114 1414 FGQGLGMRVVELTGETAM------------D----LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1414 f~~~~g~~v~~ltG~~~~------------~----~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
+. ..+|..++|..+. + ......+.|+|+|.+.+- .......-...+++|+||.|.|-
T Consensus 278 ~p---~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r----~~~d~l~~~~W~y~ILDEGH~Ir 350 (923)
T KOG0387|consen 278 WP---PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFR----IQGDDLLGILWDYVILDEGHRIR 350 (923)
T ss_pred Cc---ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhc----ccCcccccccccEEEecCccccc
Confidence 43 4688888875542 1 122335589999977642 21111122346899999999996
Q ss_pred CCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHH---HHHhccCCCc-eEecCCCCcccccEEEEecccc-cc
Q 000114 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDL---GEWIGATSHG-LFNFPPGVRPVPLEIHIQGVDI-TN 1551 (2158)
Q Consensus 1478 ~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl---~~wl~~~~~~-i~~f~~~~rpv~l~~~i~~~~~-~~ 1551 (2158)
.+.. +..+ .+.++...-|||+..+.+.| ..++ -+|..-..-+ .-.|...+ .+|+... ++.. ..
T Consensus 351 Npns---~isl-----ackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f-~~pI~~G--gyaNAs~ 419 (923)
T KOG0387|consen 351 NPNS---KISL-----ACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNF-EHPINRG--GYANASP 419 (923)
T ss_pred CCcc---HHHH-----HHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhh-hhheecc--ccCCCCH
Confidence 5442 2122 22333445666555555555 3332 2333211100 00111111 1122111 1110 00
Q ss_pred hH----HH----HHhcChHH-----HHHHHH-hHhcCCCEEEEecChHHHHHHHHHHHhhc----ccCCcc---------
Q 000114 1552 FE----AR----MQAMTKPT-----FTAIVQ-HAKNEKPALVFVPSRKYVRLTAVDLMTYS----SMDGDQ--------- 1604 (2158)
Q Consensus 1552 ~~----~~----~~~~~k~~-----~~~i~~-~~~~~~~~IVFv~sr~~~~~~a~~L~~~~----~~~~~~--------- 1604 (2158)
.. .+ +.....|. ...+.. .+....-.++||.--..-+.++..+.+-- ..++..
T Consensus 420 ~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iL 499 (923)
T KOG0387|consen 420 RQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDIL 499 (923)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHH
Confidence 00 00 11111111 111111 22233448999986655555555543210 000000
Q ss_pred ------cccccCC-------Ccc--------c---chhhHhh-------------------hhHHHHHHHhcccEEEecC
Q 000114 1605 ------KSAFLLW-------PAE--------E---VEPFIDN-------------------IQEEMLKATLRHGVGYLHE 1641 (2158)
Q Consensus 1605 ------~~~~l~~-------~~~--------~---l~~~~~~-------------------i~d~~L~~~l~~gv~~~H~ 1641 (2158)
+..+-.+ +.. . +..++.. +-+..|...-++...-+.|
T Consensus 500 rkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDG 579 (923)
T KOG0387|consen 500 RKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDG 579 (923)
T ss_pred HhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecC
Confidence 0000000 000 0 0111100 0112233233455677789
Q ss_pred CCCHHHHHHHHHHHHcCCc--eEEEecCccccccCCC-ccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCc
Q 000114 1642 GLNKTDQEVVSALFEAGKI--KVCVMSSSMCWGVPLT-AHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNS 1718 (2158)
Q Consensus 1642 ~l~~~dR~~v~~~F~~g~i--~VLVaT~~la~Gvdlp-~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~ 1718 (2158)
..+...|..+.+.|.++.. =.|++|.+.+-|+|+. +.+||| |||.- ++..=.|-.-||=|.|..+.
T Consensus 580 tT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVII-----fDPdW------NPStD~QAreRawRiGQkkd 648 (923)
T KOG0387|consen 580 TTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVII-----FDPDW------NPSTDNQARERAWRIGQKKD 648 (923)
T ss_pred CCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEE-----ECCCC------CCccchHHHHHHHhhcCccc
Confidence 9999999999999997753 3678899999999998 566666 55543 33334677788888886666
Q ss_pred eEEEEEecCC
Q 000114 1719 GKCVILCHAP 1728 (2158)
Q Consensus 1719 G~~iil~~~~ 1728 (2158)
-.+|-|....
T Consensus 649 V~VYRL~t~g 658 (923)
T KOG0387|consen 649 VVVYRLMTAG 658 (923)
T ss_pred eEEEEEecCC
Confidence 6677776665
|
|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.2e-07 Score=121.02 Aligned_cols=337 Identities=20% Similarity=0.234 Sum_probs=202.4
Q ss_pred cccccCCCChhhHhhcCCCCCCCHHHHHHHHHHHc---CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCc
Q 000114 475 KLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALS---SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551 (2158)
Q Consensus 475 ~l~~i~~lp~~~~~~f~g~~~l~~iQ~~~i~~~l~---~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~ 551 (2158)
...+++..|+|. +-.+|+.+|-.-+..++. .+.|+|+.-.-|-|||..-. +.|..+.......|
T Consensus 355 ~~~Kle~qp~~~-----~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti-~fl~~l~~~~~~~g------- 421 (1373)
T KOG0384|consen 355 RFRKLEKQPEYK-----GGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTI-TFLSYLFHSLQIHG------- 421 (1373)
T ss_pred hHHHhhcCcccc-----ccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHH-HHHHHHHHhhhccC-------
Confidence 444555556653 237899999998876553 46789999999999996542 22222222111111
Q ss_pred EEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh------------hccccEEEcchhHHHHHHhccCCCc
Q 000114 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ------------IEETQIIVTTPEKWDIITRKSGDRT 619 (2158)
Q Consensus 552 kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~------------~~~~~IiV~TPekld~l~r~~~~~~ 619 (2158)
-.|+|+|.-- +.-+.+.|.... .+++..++|+.....-. .-..++++||.|.+ +.-. .
T Consensus 422 pflvvvplst-~~~W~~ef~~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~---LkDk---~ 491 (1373)
T KOG0384|consen 422 PFLVVVPLST-ITAWEREFETWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIV---LKDK---A 491 (1373)
T ss_pred CeEEEeehhh-hHHHHHHHHHHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHH---hccH---h
Confidence 2577888755 455666776654 56888899976432211 11578999999953 2211 2
Q ss_pred cccc--cceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEccccC--ChHHHHHHHhccccCceEEecC--
Q 000114 620 YTQL--VKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP--NYEDVALFLRVNLEKGLFYFDN-- 693 (2158)
Q Consensus 620 ~l~~--v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlp--n~~dv~~~l~~~~~~~~~~f~~-- 693 (2158)
.++. ..+++|||||+|-..-...++. +..+ . .-.-+++|.|.- |.+++...+....+ +-|....
T Consensus 492 ~L~~i~w~~~~vDeahrLkN~~~~l~~~-l~~f-------~-~~~rllitgTPlQNsikEL~sLl~Fl~P-~kf~~~~~f 561 (1373)
T KOG0384|consen 492 ELSKIPWRYLLVDEAHRLKNDESKLYES-LNQF-------K-MNHRLLITGTPLQNSLKELWSLLHFLMP-GKFDSWDEF 561 (1373)
T ss_pred hhccCCcceeeecHHhhcCchHHHHHHH-HHHh-------c-ccceeeecCCCccccHHHHHHHhcccCC-CCCCcHHHH
Confidence 2333 4789999999996543333333 2111 1 122377788832 35555555533211 1010000
Q ss_pred --C---------------ccc--------------ccceeEEEeeccCC------------------------hhHHHHH
Q 000114 694 --S---------------YRP--------------VPLSQQYIGIQVKK------------------------PLQRFQL 718 (2158)
Q Consensus 694 --~---------------~rp--------------v~l~~~~~~~~~~~------------------------~~~~~~~ 718 (2158)
. .+| .|-..+++.+.... ....++.
T Consensus 562 ~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNi 641 (1373)
T KOG0384|consen 562 LEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNI 641 (1373)
T ss_pred HHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHH
Confidence 0 011 01111222111100 0011111
Q ss_pred hhH----------------------------H-------------HHHHHHHHh--CCCeEEEEecChHHHHHHHHHHHH
Q 000114 719 MND----------------------------L-------------CYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRD 755 (2158)
Q Consensus 719 l~~----------------------------~-------------~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~ 755 (2158)
|.+ . +.++++-.+ ++++||||..=.+--.-++.+|..
T Consensus 642 mmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~ 721 (1373)
T KOG0384|consen 642 MMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSL 721 (1373)
T ss_pred HHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHH
Confidence 111 0 122222222 268999998888777778888877
Q ss_pred HhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhC---CCceEEEechhhhh
Q 000114 756 TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD---GHVQVLVSTATLAW 832 (2158)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~---g~i~VLVaT~tla~ 832 (2158)
+++....+ -|++..+-|+..++.|.. ...-.|.||-+.+-
T Consensus 722 r~ypfQRL-------------------------------------DGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGL 764 (1373)
T KOG0384|consen 722 RGYPFQRL-------------------------------------DGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGL 764 (1373)
T ss_pred cCCcceec-------------------------------------cCCcchHHHHHHHHhccCCCCCceEEEEecccCcc
Confidence 76554433 789999999999999975 45678999999999
Q ss_pred ccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcH
Q 000114 833 GVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2158)
Q Consensus 833 GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~ 891 (2158)
||||-+.+-||.++.-|||. .=+|..-||-|-|..+.-.+|.+++.+..
T Consensus 765 GINLatADTVIIFDSDWNPQ----------NDLQAqARaHRIGQkk~VnVYRLVTk~Tv 813 (1373)
T KOG0384|consen 765 GINLATADTVIIFDSDWNPQ----------NDLQAQARAHRIGQKKHVNVYRLVTKNTV 813 (1373)
T ss_pred cccccccceEEEeCCCCCcc----------hHHHHHHHHHhhcccceEEEEEEecCCch
Confidence 99999888777766666665 47899999999998888888988888653
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.9e-06 Score=110.71 Aligned_cols=302 Identities=16% Similarity=0.189 Sum_probs=162.5
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcc
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l 1436 (2158)
+.-.+|-||.|||||.+..- .++.... .+.. ++++|+.+++|+.+...+++.. ...|.....-.++...+.
T Consensus 49 ~~V~vVRSpMGTGKTtaLi~-wLk~~l~-~~~~--~VLvVShRrSL~~sL~~rf~~~--~l~gFv~Y~d~~~~~i~~--- 119 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTALIR-WLKDALK-NPDK--SVLVVSHRRSLTKSLAERFKKA--GLSGFVNYLDSDDYIIDG--- 119 (824)
T ss_pred CCeEEEECCCCCCcHHHHHH-HHHHhcc-CCCC--eEEEEEhHHHHHHHHHHHHhhc--CCCcceeeeccccccccc---
Confidence 44578899999999976633 3333322 2344 8999999999999999988732 111332211111111110
Q ss_pred cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC-CCC---hHHHHHHHHHHHHhhcCCCceEEEeccCCC
Q 000114 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGP---VLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2158)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~-~g~---~~e~~isrl~~i~~~~~~~~riV~lSATl~ 1512 (2158)
...+-+++..+. +.|- ....+.+.++|||||+-.+... ..+ ..+.+...+..+. .+..++|++-|++.
T Consensus 120 ~~~~rLivqIdS---L~R~--~~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI---~~ak~VI~~DA~ln 191 (824)
T PF02399_consen 120 RPYDRLIVQIDS---LHRL--DGSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELI---RNAKTVIVMDADLN 191 (824)
T ss_pred cccCeEEEEehh---hhhc--ccccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHH---HhCCeEEEecCCCC
Confidence 123455555443 3333 1235778999999999855431 111 2334444444443 44778999999997
Q ss_pred Ch-HHHHHHhc-cCCCc-eEec--CCCC--cccccEEEEecccccc------------------------hHHHHHhcC-
Q 000114 1513 NA-KDLGEWIG-ATSHG-LFNF--PPGV--RPVPLEIHIQGVDITN------------------------FEARMQAMT- 1560 (2158)
Q Consensus 1513 n~-~dl~~wl~-~~~~~-i~~f--~~~~--rpv~l~~~i~~~~~~~------------------------~~~~~~~~~- 1560 (2158)
+. -|+-+-+. ..... ++|- .+.+ |... ....+.... .........
T Consensus 192 ~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~---~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (824)
T PF02399_consen 192 DQTVDFLASCRPDENIHVIVNTYASPGFSNRRCT---FLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDE 268 (824)
T ss_pred HHHHHHHHHhCCCCcEEEEEeeeecCCcccceEE---EecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccch
Confidence 52 23333332 21111 1111 1111 1100 000000000 000000111
Q ss_pred hHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEec
Q 000114 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2158)
Q Consensus 1561 k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H 1640 (2158)
..-+..+...+..++.+-||++|...++.++.... .....|..++
T Consensus 269 ~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~-----------------------------------~~~~~Vl~l~ 313 (824)
T PF02399_consen 269 TTFFSELLARLNAGKNICVFSSTVSFAEIVARFCA-----------------------------------RFTKKVLVLN 313 (824)
T ss_pred hhHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHH-----------------------------------hcCCeEEEEc
Confidence 12344555666888999999999888776664331 1244577777
Q ss_pred CCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccE-E-EEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCc
Q 000114 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHL-V-VVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNS 1718 (2158)
Q Consensus 1641 ~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~-v-VI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~ 1718 (2158)
+.-+..+ ++. =++.+|++=|+++..|+++...+ . |. -|..+. .+ -.+..+..||+||+-... .
T Consensus 314 s~~~~~d---v~~---W~~~~VviYT~~itvG~Sf~~~HF~~~f---~yvk~~--~~-gpd~~s~~Q~lgRvR~l~---~ 378 (824)
T PF02399_consen 314 STDKLED---VES---WKKYDVVIYTPVITVGLSFEEKHFDSMF---AYVKPM--SY-GPDMVSVYQMLGRVRSLL---D 378 (824)
T ss_pred CCCCccc---ccc---ccceeEEEEeceEEEEeccchhhceEEE---EEecCC--CC-CCcHHHHHHHHHHHHhhc---c
Confidence 7655542 222 35789999999999999986321 1 11 011111 01 124778999999997754 4
Q ss_pred eEEEEEecCC
Q 000114 1719 GKCVILCHAP 1728 (2158)
Q Consensus 1719 G~~iil~~~~ 1728 (2158)
...++..+..
T Consensus 379 ~ei~v~~d~~ 388 (824)
T PF02399_consen 379 NEIYVYIDAS 388 (824)
T ss_pred CeEEEEEecc
Confidence 5566666554
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.2e-06 Score=103.17 Aligned_cols=368 Identities=16% Similarity=0.173 Sum_probs=187.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
+..+-|+|.+-+.-.++.+..+++.-.-|-|||+.| ++|...... .. -.++++|. ++-..+.+.+.+.|+...
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQA-laIA~yyra---Ew--plliVcPA-svrftWa~al~r~lps~~ 268 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQA-LAIARYYRA---EW--PLLIVCPA-SVRFTWAKALNRFLPSIH 268 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHH-HHHHHHHhh---cC--cEEEEecH-HHhHHHHHHHHHhccccc
Confidence 346778999998888887777999999999999998 777766665 33 57899996 334445555554444332
Q ss_pred CcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhc
Q 000114 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~ 1498 (2158)
. +....+....-...-....|.|.+.+.+..+-...+ -...+++|+||.|+|-+..... .+.+...+
T Consensus 269 p--i~vv~~~~D~~~~~~t~~~v~ivSye~ls~l~~~l~----~~~~~vvI~DEsH~Lk~sktkr-------~Ka~~dll 335 (689)
T KOG1000|consen 269 P--IFVVDKSSDPLPDVCTSNTVAIVSYEQLSLLHDILK----KEKYRVVIFDESHMLKDSKTKR-------TKAATDLL 335 (689)
T ss_pred c--eEEEecccCCccccccCCeEEEEEHHHHHHHHHHHh----cccceEEEEechhhhhccchhh-------hhhhhhHH
Confidence 3 333333222221222344788999888765443322 2348999999999997654322 22222223
Q ss_pred CCCceEEEeccCCCC--hHHHHHHhccCCCceE----ecC---CCCcccccEEEEecccccc---hHHHHHhcChHHHHH
Q 000114 1499 ENKIRIVALSTSLAN--AKDLGEWIGATSHGLF----NFP---PGVRPVPLEIHIQGVDITN---FEARMQAMTKPTFTA 1566 (2158)
Q Consensus 1499 ~~~~riV~lSATl~n--~~dl~~wl~~~~~~i~----~f~---~~~rpv~l~~~i~~~~~~~---~~~~~~~~~k~~~~~ 1566 (2158)
..-.++|+||.|++- +.++-..+.+-...+| .|. -+.+.++.-..+.+..... +.-.-..|.+.....
T Consensus 336 k~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~d 415 (689)
T KOG1000|consen 336 KVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKAD 415 (689)
T ss_pred HHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999753 2333332322222111 111 1123333333332222111 011112345555666
Q ss_pred HHHhHhcCCCEEEEecC-hHHHHHHHHHHHhhccc-C---Ccccc-c----cc-CCCcccchhhHh--------------
Q 000114 1567 IVQHAKNEKPALVFVPS-RKYVRLTAVDLMTYSSM-D---GDQKS-A----FL-LWPAEEVEPFID-------------- 1621 (2158)
Q Consensus 1567 i~~~~~~~~~~IVFv~s-r~~~~~~a~~L~~~~~~-~---~~~~~-~----~l-~~~~~~l~~~~~-------------- 1621 (2158)
++..+-+..+.+|++.. +..+.. .++...... . ...+. . |. ......+..+++
T Consensus 416 vL~qLPpKrr~Vv~~~~gr~da~~--~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~ 493 (689)
T KOG1000|consen 416 VLKQLPPKRREVVYVSGGRIDARM--DDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPR 493 (689)
T ss_pred HHhhCCccceEEEEEcCCccchHH--HHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCc
Confidence 66665555555555543 322221 111111100 0 00000 0 00 000001111111
Q ss_pred ---------hhhHHHHHHHhccc--EEEecCCCCHHHHHHHHHHHHcC-CceE-EEecCccccccCCCccEEEEecceee
Q 000114 1622 ---------NIQEEMLKATLRHG--VGYLHEGLNKTDQEVVSALFEAG-KIKV-CVMSSSMCWGVPLTAHLVVVMGTQYY 1688 (2158)
Q Consensus 1622 ---------~i~d~~L~~~l~~g--v~~~H~~l~~~dR~~v~~~F~~g-~i~V-LVaT~~la~Gvdlp~~~vVI~gt~~y 1688 (2158)
.+-|..-......+ ..-+.|..+..+|....+.|... +++| +++-.+++.|+++.+..+||..--++
T Consensus 494 KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~w 573 (689)
T KOG1000|consen 494 KFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHW 573 (689)
T ss_pred eEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecC
Confidence 11122222222333 34567889999999999999854 3443 33344568999999888877433334
Q ss_pred cCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecC-ChHHHHHHHhh
Q 000114 1689 DGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHA-PRKEYYKKFLY 1738 (2158)
Q Consensus 1689 d~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~-~~~~~~~k~l~ 1738 (2158)
++. -++|-=-||.|.|....-.++.+|.. ...++.-..++
T Consensus 574 nPg----------vLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~ 614 (689)
T KOG1000|consen 574 NPG----------VLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQ 614 (689)
T ss_pred CCc----------eEEechhhhhhccccceeeEEEEEecCchHHHHHHHHH
Confidence 333 24455555555553333333444444 34455444443
|
|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.8e-06 Score=108.02 Aligned_cols=129 Identities=19% Similarity=0.210 Sum_probs=86.7
Q ss_pred CCCCCHHHHHHHHHHHc---CCCcEEEEccCCCchHHH--HHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000114 493 MTQLNRVQSRVYKSALS---SADNILLCAPTGAGKTNV--AVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~---~~~nvlv~APTGsGKT~~--a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~ 567 (2158)
+..|.++|+..+..+++ .+.--|+.-.-|-|||.. +.|+.|++-... ...+|+|||. .++.|+.
T Consensus 203 ~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~----------~~paLIVCP~-Tii~qW~ 271 (923)
T KOG0387|consen 203 WSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKL----------TKPALIVCPA-TIIHQWM 271 (923)
T ss_pred HHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccc----------cCceEEEccH-HHHHHHH
Confidence 35789999999987653 233368888999999954 334444432111 1269999996 6789999
Q ss_pred HHHHhhcccCCcEEEEEeCCCcc----------------CHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeec
Q 000114 568 GNLSNRLQMYDVKVRELSGDQTL----------------TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDE 631 (2158)
Q Consensus 568 ~~~~~~~~~~gi~v~~l~Gd~~~----------------~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDE 631 (2158)
++|+.++.+ ++|.+++|..+. .+.......|+++|.+.+. ..++...-....++|+||
T Consensus 272 ~E~~~w~p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r----~~~d~l~~~~W~y~ILDE 345 (923)
T KOG0387|consen 272 KEFQTWWPP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFR----IQGDDLLGILWDYVILDE 345 (923)
T ss_pred HHHHHhCcc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhc----ccCcccccccccEEEecC
Confidence 999998765 578888775542 1112345679999998652 222222233458999999
Q ss_pred ccccccC
Q 000114 632 IHLLHDN 638 (2158)
Q Consensus 632 aH~l~d~ 638 (2158)
.|.+-..
T Consensus 346 GH~IrNp 352 (923)
T KOG0387|consen 346 GHRIRNP 352 (923)
T ss_pred cccccCC
Confidence 9998653
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-07 Score=98.27 Aligned_cols=132 Identities=20% Similarity=0.338 Sum_probs=74.5
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccC
Q 000114 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~ 591 (2158)
+-.++-..+|||||--.+--+++.... .+.++|+++|||.++.++.+.++.. ++++. +.-..
T Consensus 5 ~~~~~d~hpGaGKTr~vlp~~~~~~i~----------~~~rvLvL~PTRvva~em~~aL~~~----~~~~~--t~~~~-- 66 (148)
T PF07652_consen 5 ELTVLDLHPGAGKTRRVLPEIVREAIK----------RRLRVLVLAPTRVVAEEMYEALKGL----PVRFH--TNARM-- 66 (148)
T ss_dssp EEEEEE--TTSSTTTTHHHHHHHHHHH----------TT--EEEEESSHHHHHHHHHHTTTS----SEEEE--STTSS--
T ss_pred ceeEEecCCCCCCcccccHHHHHHHHH----------ccCeEEEecccHHHHHHHHHHHhcC----CcccC--ceeee--
Confidence 345788999999998655545544333 2348999999999999999887542 33332 21111
Q ss_pred HhhhccccEEEcchhHH-HHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHH-HHHHhhccccccEEEEccc
Q 000114 592 RQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVART-VRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 592 ~~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~-~~~~~~~~~~~riv~lSAT 669 (2158)
.....+.-|-|+|...+ ..+.+ . ....++++||+||||..-. .+|..+- ++... .....++|.+|||
T Consensus 67 ~~~~g~~~i~vMc~at~~~~~~~-p---~~~~~yd~II~DEcH~~Dp------~sIA~rg~l~~~~-~~g~~~~i~mTAT 135 (148)
T PF07652_consen 67 RTHFGSSIIDVMCHATYGHFLLN-P---CRLKNYDVIIMDECHFTDP------TSIAARGYLRELA-ESGEAKVIFMTAT 135 (148)
T ss_dssp ----SSSSEEEEEHHHHHHHHHT-S---SCTTS-SEEEECTTT--SH------HHHHHHHHHHHHH-HTTS-EEEEEESS
T ss_pred ccccCCCcccccccHHHHHHhcC-c---ccccCccEEEEeccccCCH------HHHhhheeHHHhh-hccCeeEEEEeCC
Confidence 12234566788888876 33333 2 3357899999999997421 1222221 11111 2345789999999
Q ss_pred cCC
Q 000114 670 LPN 672 (2158)
Q Consensus 670 lpn 672 (2158)
.|.
T Consensus 136 PPG 138 (148)
T PF07652_consen 136 PPG 138 (148)
T ss_dssp -TT
T ss_pred CCC
Confidence 874
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-06 Score=115.11 Aligned_cols=126 Identities=17% Similarity=0.135 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcc
Q 000114 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575 (2158)
Q Consensus 496 l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~ 575 (2158)
+.++|--.-- +++.+ -|.-+.||=|||+++.+|+.-....++ .|-+|+..-=||.-=++.+...+.
T Consensus 170 ~yDVQliGgi-vLh~G--~IAEM~TGEGKTLvAtlp~yLnAL~Gk-----------gVHvVTVNDYLA~RDaewmgply~ 235 (1112)
T PRK12901 170 HYDVQLIGGV-VLHQG--KIAEMATGEGKTLVATLPVYLNALTGN-----------GVHVVTVNDYLAKRDSEWMGPLYE 235 (1112)
T ss_pred ccchHHhhhh-hhcCC--ceeeecCCCCchhHHHHHHHHHHHcCC-----------CcEEEEechhhhhccHHHHHHHHH
Confidence 4555543322 23332 588999999999999999876665542 255566666788877788888888
Q ss_pred cCCcEEEEEeC-CCcc-CHhhhccccEEEcchhHH--HHHHhcc---CCCccccccceEEeeccccc
Q 000114 576 MYDVKVRELSG-DQTL-TRQQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 576 ~~gi~v~~l~G-d~~~-~~~~~~~~~IiV~TPekl--d~l~r~~---~~~~~l~~v~lIIiDEaH~l 635 (2158)
.+|++|++... +.+. .++..-.++|.++|..-+ |.|.-+. .+......+.+.||||+|.+
T Consensus 236 fLGLsvg~i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSI 302 (1112)
T PRK12901 236 FHGLSVDCIDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSV 302 (1112)
T ss_pred HhCCceeecCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhh
Confidence 89999998865 3232 334456899999998775 5554432 12234455789999999965
|
|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.1e-07 Score=116.91 Aligned_cols=86 Identities=15% Similarity=0.106 Sum_probs=71.2
Q ss_pred cccEEEecCCCCHHHHHHHHHHHHc---CCceEEEecCccccccCCC-ccEEEEecceeecCCCCcCcCCCHHHHHHhhc
Q 000114 1633 RHGVGYLHEGLNKTDQEVVSALFEA---GKIKVCVMSSSMCWGVPLT-AHLVVVMGTQYYDGQENAHTDYPVTDLLQMMG 1708 (2158)
Q Consensus 1633 ~~gv~~~H~~l~~~dR~~v~~~F~~---g~i~VLVaT~~la~Gvdlp-~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~G 1708 (2158)
++..--+-|++..+-|+..++.|.. ...-.|+||.+.+-|||+- +.+||| ++.|.++..=+|-..
T Consensus 723 ~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVII-----------FDSDWNPQNDLQAqA 791 (1373)
T KOG0384|consen 723 GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVII-----------FDSDWNPQNDLQAQA 791 (1373)
T ss_pred CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEE-----------eCCCCCcchHHHHHH
Confidence 4556778899999999999999985 4567999999999999998 677777 344556777789999
Q ss_pred cCCCCCCCCceEEEEEecCCh
Q 000114 1709 HASRPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1709 RaGR~g~d~~G~~iil~~~~~ 1729 (2158)
||.|-|..+.-.+|-|++...
T Consensus 792 RaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 792 RAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred HHHhhcccceEEEEEEecCCc
Confidence 999999888888898887763
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.9e-07 Score=93.76 Aligned_cols=136 Identities=16% Similarity=0.207 Sum_probs=77.2
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcc
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l 1436 (2158)
++-.+|-..+|+|||.-.+--+++.-.. .+. |+|+++|||.++.++.+.++ .. ++++. +.-.. ....
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~--~~~--rvLvL~PTRvva~em~~aL~----~~-~~~~~--t~~~~--~~~~ 70 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK--RRL--RVLVLAPTRVVAEEMYEALK----GL-PVRFH--TNARM--RTHF 70 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH--TT----EEEEESSHHHHHHHHHHTT----TS-SEEEE--STTSS------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH--ccC--eEEEecccHHHHHHHHHHHh----cC-CcccC--ceeee--cccc
Confidence 3446888999999998664444443333 244 99999999999999988765 11 23332 21111 1223
Q ss_pred cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh
Q 000114 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (2158)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~ 1514 (2158)
...-|-++|-..+...+.. ...+.+++++|+||+|...... -.+...+..... ....++|.+|||+|-.
T Consensus 71 g~~~i~vMc~at~~~~~~~---p~~~~~yd~II~DEcH~~Dp~s----IA~rg~l~~~~~--~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 71 GSSIIDVMCHATYGHFLLN---PCRLKNYDVIIMDECHFTDPTS----IAARGYLRELAE--SGEAKVIFMTATPPGS 139 (148)
T ss_dssp SSSSEEEEEHHHHHHHHHT---SSCTTS-SEEEECTTT--SHHH----HHHHHHHHHHHH--TTS-EEEEEESS-TT-
T ss_pred CCCcccccccHHHHHHhcC---cccccCccEEEEeccccCCHHH----HhhheeHHHhhh--ccCeeEEEEeCCCCCC
Confidence 4456888888876554433 3346899999999999763221 123333444332 2357899999998753
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=98.48 E-value=5e-07 Score=111.45 Aligned_cols=167 Identities=21% Similarity=0.215 Sum_probs=96.9
Q ss_pred HHHHHHHHHHc------------CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000114 499 VQSRVYKSALS------------SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2158)
Q Consensus 499 iQ~~~i~~~l~------------~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~ 566 (2158)
+|.+++..++. .....|++-.+|+|||..++..+......... ....++|||+|. ++..++
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~------~~~~~~LIv~P~-~l~~~W 73 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQ------RGEKKTLIVVPS-SLLSQW 73 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTT------SS-S-EEEEE-T-TTHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhcccc------ccccceeEeecc-chhhhh
Confidence 46777665533 23468999999999998887666533322211 012259999999 888999
Q ss_pred HHHHHhhcccCCcEEEEEeCCC---ccCHhhhccccEEEcchhHHHHHHhc-cCCCccccccceEEeecccccccCChhh
Q 000114 567 VGNLSNRLQMYDVKVRELSGDQ---TLTRQQIEETQIIVTTPEKWDIITRK-SGDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (2158)
Q Consensus 567 ~~~~~~~~~~~gi~v~~l~Gd~---~~~~~~~~~~~IiV~TPekld~l~r~-~~~~~~l~~v~lIIiDEaH~l~d~rg~~ 642 (2158)
..++.+.+.+..+++..+.|+. ..........+++|+|.+.+...... ......--+.++||+||+|.+.+.....
T Consensus 74 ~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~ 153 (299)
T PF00176_consen 74 KEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKR 153 (299)
T ss_dssp HHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHH
T ss_pred hhhhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccccccc
Confidence 9999998865567888888876 11122345789999999975411011 1111111237899999999996544333
Q ss_pred HHHHHHHHHHHHhhccccccEEEEccccCC--hHHHHHHHh
Q 000114 643 LESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLR 681 (2158)
Q Consensus 643 le~iv~r~~~~~~~~~~~~riv~lSATlpn--~~dv~~~l~ 681 (2158)
...+ .... ....++||||+-. ..|+...+.
T Consensus 154 ~~~l--------~~l~-~~~~~lLSgTP~~n~~~dl~~~l~ 185 (299)
T PF00176_consen 154 YKAL--------RKLR-ARYRWLLSGTPIQNSLEDLYSLLR 185 (299)
T ss_dssp HHHH--------HCCC-ECEEEEE-SS-SSSGSHHHHHHHH
T ss_pred cccc--------cccc-cceEEeeccccccccccccccchh
Confidence 3322 1222 5667889999432 455555444
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.4e-06 Score=103.72 Aligned_cols=377 Identities=17% Similarity=0.209 Sum_probs=203.5
Q ss_pred CCHHHHHHHH---HHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1342 FNPIQTQVFT---VLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1342 ~~~iQ~q~~~---~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
+-++|.--++ .+|+.+-|.|++-.-|=|||..+ ++.+..+.+.+..| .-+||||.-.| .-+.+++. +|++
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~g~~g--pHLVVvPsSTl-eNWlrEf~-kwCP-- 472 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQIGNPG--PHLVVVPSSTL-ENWLREFA-KWCP-- 472 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHcCCCC--CcEEEecchhH-HHHHHHHH-HhCC--
Confidence 6666765444 35667778899999999999665 55555666543344 56889998554 33444454 4544
Q ss_pred CcEEEEEcCCcchhhh---cc----cCCcEEEeCHHHHHHHHhhhhcccc--ccceeEEEecccccccCCCCChHHHHHH
Q 000114 1419 GMRVVELTGETAMDLK---LL----EKGQIIISTPEKWDALSRRWKQRKY--VQQVSLFIIDELHLIGGQGGPVLEVIVS 1489 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~~~---~l----~~~~IIV~TPe~l~~l~r~~~~~~~--l~~v~llIiDEaH~l~~~~g~~~e~~is 1489 (2158)
.++|-.++|......+ .+ ...+|+++|...... ....+.+ -.+++++|+||.|+|-+.....|..++
T Consensus 473 sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~---~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM- 548 (941)
T KOG0389|consen 473 SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAAS---SKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLM- 548 (941)
T ss_pred ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccC---ChHHHHHHHhccccEEEecchhhhhccchHHHHHhc-
Confidence 5889999997643311 11 144999999765421 0001111 246789999999999754322222222
Q ss_pred HHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCCCC-------cccccEEEEe-cccccchHHHHHhcC
Q 000114 1490 RMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGV-------RPVPLEIHIQ-GVDITNFEARMQAMT 1560 (2158)
Q Consensus 1490 rl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~-------rpv~l~~~i~-~~~~~~~~~~~~~~~ 1560 (2158)
+ .+.+.|+++..+++.| ..++-..|.--...+|.-.-.. +..+ .-... ..-......+...|.
T Consensus 549 ------~-I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~-d~d~e~~~l~qerIsrAK~im 620 (941)
T KOG0389|consen 549 ------S-INANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTS-DGDIENALLSQERISRAKTIM 620 (941)
T ss_pred ------c-ccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCc-cchhhHHHHHHHHHHHHHHhh
Confidence 1 2456776665555655 4444433322222222211000 0000 00000 000001122333333
Q ss_pred hH-----HHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcc----c-CCc--ccc----------------------
Q 000114 1561 KP-----TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSS----M-DGD--QKS---------------------- 1606 (2158)
Q Consensus 1561 k~-----~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~----~-~~~--~~~---------------------- 1606 (2158)
+| ....++..+-+..+.|.||.-.+.-+.++..++.... . ..+ ...
T Consensus 621 ~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~ 700 (941)
T KOG0389|consen 621 KPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYT 700 (941)
T ss_pred hHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhcc
Confidence 33 2334445556667788888766555555555544331 0 000 000
Q ss_pred ---------------cccCCCc-----------------------------------------ccchhhHhhhhH-----
Q 000114 1607 ---------------AFLLWPA-----------------------------------------EEVEPFIDNIQE----- 1625 (2158)
Q Consensus 1607 ---------------~~l~~~~-----------------------------------------~~l~~~~~~i~d----- 1625 (2158)
+|..+.. ..+..++..+..
T Consensus 701 de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RV 780 (941)
T KOG0389|consen 701 DEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRV 780 (941)
T ss_pred HHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEE
Confidence 0000000 001111111100
Q ss_pred -------------HHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCC--ceEEEecCccccccCCCccEEEEecceeecC
Q 000114 1626 -------------EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGK--IKVCVMSSSMCWGVPLTAHLVVVMGTQYYDG 1690 (2158)
Q Consensus 1626 -------------~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~--i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~ 1690 (2158)
+.+-..++++..-+.|...-.+|..+++.|...+ .-.|.+|.+.+.|||+.+..+|| .||
T Consensus 781 LiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VI----ihD- 855 (941)
T KOG0389|consen 781 LIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVI----IHD- 855 (941)
T ss_pred EEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEE----Eee-
Confidence 1122334556667789999999999999998654 35788999999999999777777 233
Q ss_pred CCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCCh-HHHHHHHhhCCCccccch
Q 000114 1691 QENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR-KEYYKKFLYDAFPVESHL 1747 (2158)
Q Consensus 1691 ~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~-~~~~~k~l~~~~piES~L 1747 (2158)
+++.+-+=.|---||.|.|..+.-.++-+...+. .+.+.++-+.-+.+|+.+
T Consensus 856 -----~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~l 908 (941)
T KOG0389|consen 856 -----IDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADL 908 (941)
T ss_pred -----cCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhh
Confidence 3333434456666677766566777777766654 456666666666777666
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-06 Score=107.13 Aligned_cols=163 Identities=18% Similarity=0.196 Sum_probs=92.6
Q ss_pred HHHHHHHHHh------------cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCC-CceEEEEEcccHHHHHHHHHHHH
Q 000114 1345 IQTQVFTVLY------------NTDDNVLVAAPTGSGKTICSEFAILRNHQKASET-GVMRAVYIAPLEALAKERYRDWE 1411 (2158)
Q Consensus 1345 iQ~q~~~~l~------------~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~-~~~~~v~IaP~raLa~q~~~~~~ 1411 (2158)
+|.+++.-++ ......|++-.+|+|||+.+...+. .+....+. +.-+++||+|. ++..++..++.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccccccccceeEeecc-chhhhhhhhhc
Confidence 4666666553 2345799999999999988855444 44332221 11159999999 88899999998
Q ss_pred HHhcCCCCcEEEEEcCCc-c--hhhhcccCCcEEEeCHHHHHHHHhhhh-ccccccceeEEEecccccccCCCCChHHHH
Q 000114 1412 IKFGQGLGMRVVELTGET-A--MDLKLLEKGQIIISTPEKWDALSRRWK-QRKYVQQVSLFIIDELHLIGGQGGPVLEVI 1487 (2158)
Q Consensus 1412 ~~f~~~~g~~v~~ltG~~-~--~~~~~l~~~~IIV~TPe~l~~l~r~~~-~~~~l~~v~llIiDEaH~l~~~~g~~~e~~ 1487 (2158)
+.+.. ...++..+.|.. . .........+++|+|.+.+......+. ....--+.++||+||+|.+.+..+..+..
T Consensus 79 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~- 156 (299)
T PF00176_consen 79 KWFDP-DSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKA- 156 (299)
T ss_dssp HHSGT--TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHH-
T ss_pred ccccc-ccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccccccccc-
Confidence 55532 246888888876 1 123345567999999998761111100 01111348999999999995444322221
Q ss_pred HHHHHHHHhhcCCCceEEEeccCCCC--hHHHHH
Q 000114 1488 VSRMRYIASQVENKIRIVALSTSLAN--AKDLGE 1519 (2158)
Q Consensus 1488 isrl~~i~~~~~~~~riV~lSATl~n--~~dl~~ 1519 (2158)
+. .+. ....++||||+.. ..|+..
T Consensus 157 ------l~-~l~-~~~~~lLSgTP~~n~~~dl~~ 182 (299)
T PF00176_consen 157 ------LR-KLR-ARYRWLLSGTPIQNSLEDLYS 182 (299)
T ss_dssp ------HH-CCC-ECEEEEE-SS-SSSGSHHHHH
T ss_pred ------cc-ccc-cceEEeecccccccccccccc
Confidence 11 123 5667889999644 345444
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.7e-06 Score=108.78 Aligned_cols=112 Identities=15% Similarity=0.132 Sum_probs=73.4
Q ss_pred EEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcC-C-cchhhhccc
Q 000114 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTG-E-TAMDLKLLE 1437 (2158)
Q Consensus 1360 vli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG-~-~~~~~~~l~ 1437 (2158)
-|.-+.||=|||+++-+|+.-.... +. .+-+|+..--||.-=++.+. .+-..+|++|+++.. + .+...+..-
T Consensus 185 ~IAEM~TGEGKTLvAtlp~yLnAL~---Gk--gVHvVTVNDYLA~RDaewmg-ply~fLGLsvg~i~~~~~~~~~rr~aY 258 (1112)
T PRK12901 185 KIAEMATGEGKTLVATLPVYLNALT---GN--GVHVVTVNDYLAKRDSEWMG-PLYEFHGLSVDCIDKHQPNSEARRKAY 258 (1112)
T ss_pred ceeeecCCCCchhHHHHHHHHHHHc---CC--CcEEEEechhhhhccHHHHH-HHHHHhCCceeecCCCCCCHHHHHHhC
Confidence 4789999999999999998755444 33 34556666677765555444 333457999998865 3 233455666
Q ss_pred CCcEEEeCHHHHH-HHHhhh----hccccccceeEEEeccccccc
Q 000114 1438 KGQIIISTPEKWD-ALSRRW----KQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1438 ~~~IIV~TPe~l~-~l~r~~----~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
.+||.++|..-|- +.+|-. ......+.+.+.||||+|.++
T Consensus 259 ~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 259 NADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred CCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 7899999987651 222211 112234568899999999553
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.3e-06 Score=104.11 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=57.2
Q ss_pred CCCCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000114 493 MTQLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~ 569 (2158)
|. ++|.|.+.+..+ +..++++++.||||+|||+++++|++..+...... ..+.+++|.++|.++..|....
T Consensus 7 y~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00488 7 YE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHHH
Confidence 44 599999955543 45567899999999999999999998776643211 0234899999999998888777
Q ss_pred HHhh
Q 000114 570 LSNR 573 (2158)
Q Consensus 570 ~~~~ 573 (2158)
+++.
T Consensus 81 l~~~ 84 (289)
T smart00488 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7654
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.3e-06 Score=104.11 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=57.2
Q ss_pred CCCCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000114 493 MTQLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~ 569 (2158)
|. ++|.|.+.+..+ +..++++++.||||+|||+++++|++..+...... ..+.+++|.++|.++..|....
T Consensus 7 y~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~~ 80 (289)
T smart00489 7 YE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLEE 80 (289)
T ss_pred CC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHHH
Confidence 44 599999955543 45567899999999999999999998776643211 0234899999999998888777
Q ss_pred HHhh
Q 000114 570 LSNR 573 (2158)
Q Consensus 570 ~~~~ 573 (2158)
+++.
T Consensus 81 l~~~ 84 (289)
T smart00489 81 LRKL 84 (289)
T ss_pred HHhc
Confidence 7654
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.9e-06 Score=103.19 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=56.3
Q ss_pred CCCCCHHHHHHHHHHh---cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCC-CceEEEEEcccHHHHHHHHHHHHH
Q 000114 1339 FKHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASET-GVMRAVYIAPLEALAKERYRDWEI 1412 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~---~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~-~~~~~v~IaP~raLa~q~~~~~~~ 1412 (2158)
|. ++|.|.+.+..++ ..++++++.||||+|||+++++|++..+...... .+.+++|.++|.++..|....+++
T Consensus 7 y~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 7 YE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 44 5999999666543 3567899999999999999999998776552221 123799999999999988777764
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.9e-06 Score=103.19 Aligned_cols=73 Identities=19% Similarity=0.292 Sum_probs=56.3
Q ss_pred CCCCCHHHHHHHHHHh---cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCC-CceEEEEEcccHHHHHHHHHHHHH
Q 000114 1339 FKHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASET-GVMRAVYIAPLEALAKERYRDWEI 1412 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~---~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~-~~~~~v~IaP~raLa~q~~~~~~~ 1412 (2158)
|. ++|.|.+.+..++ ..++++++.||||+|||+++++|++..+...... .+.+++|.++|.++..|....+++
T Consensus 7 y~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 7 YE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 44 5999999666543 3567899999999999999999998776552221 123799999999999988777764
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.5e-05 Score=105.31 Aligned_cols=162 Identities=20% Similarity=0.252 Sum_probs=102.9
Q ss_pred CCCHHHHHHHHHH--HcCCC-cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSA--LSSAD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~--l~~~~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
.|+.+|.+-+..+ ++.-+ +-|+|-.-|-|||+..+-.+.......+ .+......+-.++|+|. .|+--+..++.
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~--s~~~e~~~~PSLIVCPs-TLtGHW~~E~~ 1051 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRR--SESSEFNRLPSLIVCPS-TLTGHWKSEVK 1051 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhc--ccchhhccCCeEEECCc-hhhhHHHHHHH
Confidence 6788999988753 33322 5799999999999987655544433321 12222233448999996 78999999999
Q ss_pred hhcccCCcEEEEEeCCCccCH---hhhccccEEEcchhHH----HHHHhccCCCccccccceEEeecccccccCChhhHH
Q 000114 572 NRLQMYDVKVRELSGDQTLTR---QQIEETQIIVTTPEKW----DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~---~~~~~~~IiV~TPekl----d~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le 644 (2158)
+++.. ++|..++|...... .+.++++|||++.+.+ +.+... ...++|+||-|.+-..+.
T Consensus 1052 kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~~~--------~wNYcVLDEGHVikN~kt---- 1117 (1549)
T KOG0392|consen 1052 KFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLIKI--------DWNYCVLDEGHVIKNSKT---- 1117 (1549)
T ss_pred Hhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHHhc--------ccceEEecCcceecchHH----
Confidence 98765 67888888654332 2345779999999975 222221 247999999998865432
Q ss_pred HHHHHHHHHHhhccccccEEEEccccC--ChHHHHH
Q 000114 645 SIVARTVRQIETTKEHIRLVGLSATLP--NYEDVAL 678 (2158)
Q Consensus 645 ~iv~r~~~~~~~~~~~~riv~lSATlp--n~~dv~~ 678 (2158)
++...+.+...+-| +.||.|.- |..++..
T Consensus 1118 ----kl~kavkqL~a~hR-LILSGTPIQNnvleLWS 1148 (1549)
T KOG0392|consen 1118 ----KLTKAVKQLRANHR-LILSGTPIQNNVLELWS 1148 (1549)
T ss_pred ----HHHHHHHHHhhcce-EEeeCCCcccCHHHHHH
Confidence 11122222233334 66788842 4555443
|
|
| >COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.9e-06 Score=97.13 Aligned_cols=167 Identities=15% Similarity=0.170 Sum_probs=136.6
Q ss_pred cCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhhcCCCCCCCCCCChhHHHHHHHHHHHcCCCC
Q 000114 1008 ISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKL 1087 (2158)
Q Consensus 1008 i~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l~~~~~~~~~~~~~~~~~K~~~llq~~i~~~~~ 1087 (2158)
|..-||.+|-..+....+..++|.+||.|.||..+. | +.|..-.--|||.||.|-+-
T Consensus 227 vh~vT~~~f~~~~~~SlTlDelLslfasskElt~~~----------------p-------k~pk~~~ekll~dhlnr~~s 283 (610)
T COG5407 227 VHFVTMEMFYERIDGSLTLDELLSLFASSKELTRMN----------------P-------KGPKCTLEKLLGDHLNRARS 283 (610)
T ss_pred eeeeeHHHHHHhhcccchHHHHHHHHhhhHHHHHhC----------------C-------CCCchhHHHHHHHHHhHhhc
Confidence 566789999998888899999999999999985542 1 12334455699999999887
Q ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCC-CCCccccCCCCHHHHHHHHhCCC-Cc
Q 000114 1088 EGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSV-QTPLRQFNGIPNEILMKLEKKDF-AW 1165 (2158)
Q Consensus 1088 ~~~~l~~d~~~i~~~a~ri~~a~~ei~~~~~~~~~~~~~~~l~~~v~~~~w~~-~~~l~q~~~~~~~~~~~l~~~~~-~~ 1165 (2158)
..|. ...|..+..-++.||..|+...+.+..+..++++-|+|.|++--+ ..|+.|+|+...+-++++--+.| ++
T Consensus 284 ~~fn----~~ri~s~~~~ll~aLL~ia~~F~f~~~~~g~~n~~q~iVqAiPld~~f~ilQlp~~d~E~~~~~s~r~I~~~ 359 (610)
T COG5407 284 VEFN----EYRIKSNVEGLLGALLRIASNFAFPLKECGKENKGQYIVQAIPLDHLFRILQLPRSDVEYAQRVSLRLIEGM 359 (610)
T ss_pred ccch----heehhhhhHHHHHHHHHHHhhccCCchhhccchhhheeeEeccCCCCchhhcccchhHHHHHHhhhhhhhhh
Confidence 7666 567888999999999999999999999999999999999999765 68999999999988887765555 45
Q ss_pred hhhccCChHHhhhhhcCch--hHHHHHHHHhcCCcceE
Q 000114 1166 ERYYDLSPQELGELIRFPK--MGRTLHKFVHQFPKLIL 1201 (2158)
Q Consensus 1166 ~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~P~~~~ 1201 (2158)
..+..|..++.++.+++-. ..+.+.+.++.+|++.+
T Consensus 360 ~~~~sL~~~~~g~vl~n~~~~~l~e~~~va~gIPr~~~ 397 (610)
T COG5407 360 KAIGSLIAKRYGNVLKNLVVLELMEIQAVADGIPRYFL 397 (610)
T ss_pred hhHhhHHHHHHhhhhhhHHHHHHHHHHHHhcCCCceEE
Confidence 6778888999999987532 23678888999999876
|
|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.3e-05 Score=97.47 Aligned_cols=376 Identities=20% Similarity=0.239 Sum_probs=201.9
Q ss_pred CCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
+|-++|.--+..+ ++.+=|.|+.-.-|-|||..++ +.+..+.+...+ + .-+||||.-.| .-+.++|.
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvI-aFlayLkq~g~~-------g-pHLVVvPsSTl-eNWlrEf~ 468 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVI-AFLAYLKQIGNP-------G-PHLVVVPSSTL-ENWLREFA 468 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHHH-HHHHHHHHcCCC-------C-CcEEEecchhH-HHHHHHHH
Confidence 4778888776643 3444577999999999996542 333333332211 1 35888998665 66778888
Q ss_pred hhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccc--cccceEEeecccccccCChhh
Q 000114 572 NRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYT--QLVKLLIIDEIHLLHDNRGPV 642 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l--~~v~lIIiDEaH~l~d~rg~~ 642 (2158)
+++. .++|..++|.....++. ....+|+|||..- ......++.++ .+++++|+||.|+|-+.....
T Consensus 469 kwCP--sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~l---a~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeR 543 (941)
T KOG0389|consen 469 KWCP--SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNL---AASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSER 543 (941)
T ss_pred HhCC--ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeec---ccCChHHHHHHHhccccEEEecchhhhhccchHH
Confidence 8765 47899999976433322 1378999999873 22222233333 346899999999997532222
Q ss_pred HHHHHHHHHHHHhhccccccEEEEccccC--ChHHHHHHHhccccCceEEecCCcccccceeEEEeec--c---------
Q 000114 643 LESIVARTVRQIETTKEHIRLVGLSATLP--NYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQ--V--------- 709 (2158)
Q Consensus 643 le~iv~r~~~~~~~~~~~~riv~lSATlp--n~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~--~--------- 709 (2158)
+..++ ..+.+.| ++||.|.- |..++-..|..-++. + |+...... ...+-... .
T Consensus 544 y~~LM--------~I~An~R-lLLTGTPLQNNL~ELiSLL~FvlP~-v--F~~~~~dl--~~if~~k~~~d~d~e~~~l~ 609 (941)
T KOG0389|consen 544 YKHLM--------SINANFR-LLLTGTPLQNNLKELISLLAFVLPK-V--FDSSMEDL--DVIFKAKKTSDGDIENALLS 609 (941)
T ss_pred HHHhc--------cccccce-EEeeCCcccccHHHHHHHHHHHhhH-h--hhccchHH--HHHHhccCCccchhhHHHHH
Confidence 22222 1234444 67788832 444554444432211 1 11111100 00000000 0
Q ss_pred CChhHHHHH-hhHHHH----HHHHHHhC-CCeEEEEecChHHHHHHHHHHHHHhh---cccccc----c-----------
Q 000114 710 KKPLQRFQL-MNDLCY----EKVVAVAG-KHQVLIFVHSRKETAKTARAIRDTAL---ENDTLG----R----------- 765 (2158)
Q Consensus 710 ~~~~~~~~~-l~~~~~----~~i~~~~~-~~~vLVFv~sr~~~~~~a~~L~~~~~---~~~~~~----~----------- 765 (2158)
.....+... |...+. ..++..++ +.+.|.||.=.+.-..++..+.+... ...... .
T Consensus 610 qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~A 689 (941)
T KOG0389|consen 610 QERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAA 689 (941)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHh
Confidence 001112211 222222 22333333 45777787755444444444333220 000000 0
Q ss_pred ---c------------------ccc---CchhHHHHHhh------------h---h--------------ccCcchhhhh
Q 000114 766 ---F------------------LKE---DSVSREILQSH------------T---D--------------MVKSNDLKDL 792 (2158)
Q Consensus 766 ---~------------------~~~---~~~~~~~l~~~------------~---~--------------~~~~~~l~~l 792 (2158)
+ ++. ...+...+.+. + . ..+...|+.+
T Consensus 690 nHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~L 769 (941)
T KOG0389|consen 690 NHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKEL 769 (941)
T ss_pred cChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHH
Confidence 0 000 00000000000 0 0 0011122222
Q ss_pred ------------------------------ccCCeEEecCCCCHHHHHHHHHHHhCC-Cce-EEEechhhhhccCCCceE
Q 000114 793 ------------------------------LPYGFAIHHAGMTRGDRQLVEDLFGDG-HVQ-VLVSTATLAWGVNLPAHT 840 (2158)
Q Consensus 793 ------------------------------l~~gv~~hHagl~~~~R~~v~~~F~~g-~i~-VLVaT~tla~GVdlP~v~ 840 (2158)
+.+++.-+-|...-.+|..+++.|... .+. .|.+|-+.+-|||+-+.+
T Consensus 770 Lp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An 849 (941)
T KOG0389|consen 770 LPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCAN 849 (941)
T ss_pred HHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccc
Confidence 234455567888899999999999754 343 578999999999999999
Q ss_pred EEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHH-HHHhhcCCCcccchhh
Q 000114 841 VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRY-YLSLMNQQLPIESQFV 909 (2158)
Q Consensus 841 vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~-y~~ll~~~~pieS~l~ 909 (2158)
+||.++.-|+|-. =.|.--||-|.|..+.-.++.+.+.+..+. ...+.+..+-+|+.+.
T Consensus 850 ~VIihD~dFNP~d----------D~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt 909 (941)
T KOG0389|consen 850 TVIIHDIDFNPYD----------DKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLT 909 (941)
T ss_pred eEEEeecCCCCcc----------cchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhc
Confidence 9999887777753 457777777777667777888888877654 4445555555555544
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.9e-05 Score=104.50 Aligned_cols=140 Identities=18% Similarity=0.177 Sum_probs=86.5
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhccc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE 1437 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~ 1437 (2158)
..-+|.=-||||||+.....+-..... .+.+++++|+=+++|-.|..+.+. .|+....... -......-.+.++
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~---~~~~~v~fvvDR~dLd~Q~~~~f~-~~~~~~~~~~--~~~s~~~Lk~~l~ 347 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL---PKNPKVLFVVDRKDLDDQTSDEFQ-SFGKVAFNDP--KAESTSELKELLE 347 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc---cCCCeEEEEechHHHHHHHHHHHH-HHHHhhhhcc--cccCHHHHHHHHh
Confidence 458999999999998875544333333 334599999999999999999998 5654311111 1111111123333
Q ss_pred --CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC
Q 000114 1438 --KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1438 --~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n 1513 (2158)
...|||+|-++|............-++=-+||+||||+-- .| ....+|+... ++...+|+|.|+--
T Consensus 348 ~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ--~G----~~~~~~~~~~----~~a~~~gFTGTPi~ 415 (962)
T COG0610 348 DGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ--YG----ELAKLLKKAL----KKAIFIGFTGTPIF 415 (962)
T ss_pred cCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc--cc----HHHHHHHHHh----ccceEEEeeCCccc
Confidence 3489999999997665442111112233479999999642 22 1333344332 25889999999743
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00012 Score=102.25 Aligned_cols=138 Identities=19% Similarity=0.180 Sum_probs=82.0
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCH
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~ 592 (2158)
.-+|.=-||||||+.-...+-..+.. ...+++++|+-++.|-.|+.+.|......... +. -..+...-+
T Consensus 275 ~G~IWHtqGSGKTlTm~~~A~~l~~~---------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~-~~-~~~s~~~Lk 343 (962)
T COG0610 275 GGYIWHTQGSGKTLTMFKLARLLLEL---------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFN-DP-KAESTSELK 343 (962)
T ss_pred ceEEEeecCCchHHHHHHHHHHHHhc---------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhh-cc-cccCHHHHH
Confidence 57999999999998765444333322 24569999999999999999999986442211 11 111111111
Q ss_pred hhhc--cccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000114 593 QQIE--ETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2158)
Q Consensus 593 ~~~~--~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATl 670 (2158)
+.+. ...|||||-.|+............-.+=-+||+||||+-.. |..- .++ ...-++...+|+|.|+
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~--G~~~----~~~----~~~~~~a~~~gFTGTP 413 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY--GELA----KLL----KKALKKAIFIGFTGTP 413 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc--cHHH----HHH----HHHhccceEEEeeCCc
Confidence 2222 35899999999854443321111112223789999997532 2111 111 1123457889999994
Q ss_pred C
Q 000114 671 P 671 (2158)
Q Consensus 671 p 671 (2158)
-
T Consensus 414 i 414 (962)
T COG0610 414 I 414 (962)
T ss_pred c
Confidence 3
|
|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.2e-05 Score=90.15 Aligned_cols=153 Identities=21% Similarity=0.235 Sum_probs=100.2
Q ss_pred CCCHHHHHHHHHHHcCCC----cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSALSSAD----NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~----nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.|-|+|.+-+..+....+ --++.-.-|.|||..++-.++..+. +...++++|+.|| .|+.+++
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~------------ra~tLVvaP~VAl-mQW~nEI 250 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVD------------RAPTLVVAPTVAL-MQWKNEI 250 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccc------------cCCeeEEccHHHH-HHHHHHH
Confidence 345667766654433221 1477789999999887666655332 2358999999997 5677777
Q ss_pred HhhcccCCcEEEEEeCCCcc-CHhhhccccEEEcchhHHHHHHhccC-----------CCccccccc--eEEeecccccc
Q 000114 571 SNRLQMYDVKVRELSGDQTL-TRQQIEETQIIVTTPEKWDIITRKSG-----------DRTYTQLVK--LLIIDEIHLLH 636 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~-~~~~~~~~~IiV~TPekld~l~r~~~-----------~~~~l~~v~--lIIiDEaH~l~ 636 (2158)
.+... -.++|..++|.... +-+...+++++.||...+....|+.. ..+.+..++ -||+||||.+.
T Consensus 251 ~~~T~-gslkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK 329 (791)
T KOG1002|consen 251 ERHTS-GSLKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIK 329 (791)
T ss_pred HHhcc-CceEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccc
Confidence 76554 35788999996543 34567899999999998877777621 233444444 59999999987
Q ss_pred cCChhhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000114 637 DNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2158)
Q Consensus 637 d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATl 670 (2158)
+-+.....++.+ + + ..+-.+||.|.
T Consensus 330 ~R~snTArAV~~-L----~----tt~rw~LSGTP 354 (791)
T KOG1002|consen 330 DRQSNTARAVFA-L----E----TTYRWCLSGTP 354 (791)
T ss_pred cccccHHHHHHh-h----H----hhhhhhccCCc
Confidence 644333333322 1 1 12347889983
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0009 Score=84.23 Aligned_cols=302 Identities=15% Similarity=0.191 Sum_probs=179.8
Q ss_pred CCcEEEEEcccHHHHHHHHHHHHhhccc-------------CCcE-------EE-------------EEeCCCc------
Q 000114 549 SNYKIVYVAPMKALVAEVVGNLSNRLQM-------------YDVK-------VR-------------ELSGDQT------ 589 (2158)
Q Consensus 549 ~~~kil~iaP~kaLa~q~~~~~~~~~~~-------------~gi~-------v~-------------~l~Gd~~------ 589 (2158)
..+|||+|+|+|.-|-++++.+.+++.. +|+. .. .+.|..+
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 5679999999999999999988876643 1200 00 0111110
Q ss_pred --cCHh------hhccccEEEcchhHHHHHHh----ccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHH---
Q 000114 590 --LTRQ------QIEETQIIVTTPEKWDIITR----KSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQI--- 654 (2158)
Q Consensus 590 --~~~~------~~~~~~IiV~TPekld~l~r----~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~--- 654 (2158)
+++. ...++|||||+|=-+..+.. +..+..+++.+.++|||.+|.+.=..-..+..++..+-.+-
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCC
Confidence 0000 02368999999987754444 34566789999999999999876444444555555432110
Q ss_pred --------------hhccccccEEEEccccCChHHHHHHHhc--cccCceEEecCCc--------ccccceeEEEeeccC
Q 000114 655 --------------ETTKEHIRLVGLSATLPNYEDVALFLRV--NLEKGLFYFDNSY--------RPVPLSQQYIGIQVK 710 (2158)
Q Consensus 655 --------------~~~~~~~riv~lSATlpn~~dv~~~l~~--~~~~~~~~f~~~~--------rpv~l~~~~~~~~~~ 710 (2158)
.....-.|.|++|+... .++...++. ....|...+...+ -.+++.|.+..+...
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~--pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~ 273 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQT--PEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCS 273 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCC--HHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCC
Confidence 00122458999999864 233333332 1112222222211 234667777766655
Q ss_pred Ch----hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCc
Q 000114 711 KP----LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKS 786 (2158)
Q Consensus 711 ~~----~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 786 (2158)
.. ..+++...+.++..+......+.+|||++|=-+=.++-..|......
T Consensus 274 s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~s--------------------------- 326 (442)
T PF06862_consen 274 SPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENIS--------------------------- 326 (442)
T ss_pred CcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCe---------------------------
Confidence 43 33455555555555543334678999999988877777777643322
Q ss_pred chhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhh--hhccCCCceEEEEecccccCCCCCccccCCHHHH
Q 000114 787 NDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATL--AWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (2158)
Q Consensus 787 ~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tl--a~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2158)
++..|--.+..+-...-..|.+|+.+||+-|-=+ =+-..+.++..||- |.+|.. +.=..++
T Consensus 327 ----------F~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viF----Y~~P~~---p~fY~El 389 (442)
T PF06862_consen 327 ----------FVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIF----YGPPEN---PQFYSEL 389 (442)
T ss_pred ----------EEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEE----ECCCCC---hhHHHHH
Confidence 3444667778888888999999999999999643 33456777778887 555541 1123455
Q ss_pred HHhhcccCC-CCCCCccEEEEEcCCCcHHHHHH
Q 000114 865 MQMLGRAGR-PQYDSYGEGIIITGHSELRYYLS 896 (2158)
Q Consensus 865 ~Qr~GRAGR-~g~d~~G~~iil~~~~~~~~y~~ 896 (2158)
+.+++.... .+....+.|.++++.-+.-.+..
T Consensus 390 ~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LEr 422 (442)
T PF06862_consen 390 LNMLDESSGGEVDAADATVTVLYSKYDALRLER 422 (442)
T ss_pred HhhhcccccccccccCceEEEEecHhHHHHHHH
Confidence 555554433 11223467788877765444443
|
; GO: 0005634 nucleus |
| >KOG2340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00025 Score=86.90 Aligned_cols=350 Identities=18% Similarity=0.188 Sum_probs=196.2
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCC---ch--HHHHHHHHHHHHHhccCC----------C--C--------CCCC
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGA---GK--TNVAVLTILQQLALNRND----------D--G--------SFNH 548 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGs---GK--T~~a~l~il~~l~~~~~~----------~--~--------~~~~ 548 (2158)
..+++.|.+.+..+++=.+ ++ .||++ |+ +-+|.+-+++++.+.+.. . | ....
T Consensus 215 ~pltalQ~~L~~~m~~YrD-l~--y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~ 291 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRD-LL--YPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGF 291 (698)
T ss_pred CcchHHHHHHHHHHHhhhh-hc--cccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCC
Confidence 4689999999988776555 44 35544 44 567888888877653310 0 0 0123
Q ss_pred CCcEEEEEcccHHHHHHHHHHHHhhcccCCc---E-------EEEEeCCCcc----------------------------
Q 000114 549 SNYKIVYVAPMKALVAEVVGNLSNRLQMYDV---K-------VRELSGDQTL---------------------------- 590 (2158)
Q Consensus 549 ~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi---~-------v~~l~Gd~~~---------------------------- 590 (2158)
..+|||+++|+|+-|-.+++.+..++....- . -+++.|+...
T Consensus 292 tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ 371 (698)
T KOG2340|consen 292 TRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLA 371 (698)
T ss_pred CCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHH
Confidence 5689999999999999999999887532110 0 1223332110
Q ss_pred -CHhh------hccccEEEcchhHHHHHHh----ccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhh---
Q 000114 591 -TRQQ------IEETQIIVTTPEKWDIITR----KSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIET--- 656 (2158)
Q Consensus 591 -~~~~------~~~~~IiV~TPekld~l~r----~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~--- 656 (2158)
+++. ...++|+||+|=-+.++.. +..+..+++.+.++|||-+|.+.-..-..+..|+..+-.+-..
T Consensus 372 ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwEhl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 372 FTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWEHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHHHHHHHHHHhhcCcccccC
Confidence 1111 2368999999988866655 2345678999999999999988765544555555544211000
Q ss_pred --------------ccccccEEEEccccCChHHHHHHHhccc--cCceEEec-----CCcc--cccceeEEEeeccCChh
Q 000114 657 --------------TKEHIRLVGLSATLPNYEDVALFLRVNL--EKGLFYFD-----NSYR--PVPLSQQYIGIQVKKPL 713 (2158)
Q Consensus 657 --------------~~~~~riv~lSATlpn~~dv~~~l~~~~--~~~~~~f~-----~~~r--pv~l~~~~~~~~~~~~~ 713 (2158)
.....|.+++|+-.. .++..++.... ..|.+.+. ++.+ -+|+.+.+..+......
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~--~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~ 529 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSH--PLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSII 529 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhcc--HHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcc
Confidence 001124455554421 22333322110 11111111 1111 23444444444333322
Q ss_pred HHHHHhhHHHHHHHHHHhC---CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhh
Q 000114 714 QRFQLMNDLCYEKVVAVAG---KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2158)
Q Consensus 714 ~~~~~l~~~~~~~i~~~~~---~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 790 (2158)
....+--......|+-... ..-+||+++|--+-.++-.++.+.......+
T Consensus 530 ~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i--------------------------- 582 (698)
T KOG2340|consen 530 ETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMI--------------------------- 582 (698)
T ss_pred cCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHH---------------------------
Confidence 2111111111222222111 3468999999888777777776654322211
Q ss_pred hhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhh--hhccCCCceEEEEecccccCCCCCccccCCHHHHHHhh
Q 000114 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATL--AWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (2158)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tl--a~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~ 868 (2158)
|---+...=...-+.|-.|..+||+-|.-+ =+--++.++.-||.+..|-+|. =..+++.|.
T Consensus 583 ----------~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~-------FYsEiinm~ 645 (698)
T KOG2340|consen 583 ----------NEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPH-------FYSEIINMS 645 (698)
T ss_pred ----------hhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCcH-------HHHHHHhhh
Confidence 111122233445678999999999999643 4556888998899855444443 356899999
Q ss_pred cccCCCC--CCCccEEEEEcCCCcHH
Q 000114 869 GRAGRPQ--YDSYGEGIIITGHSELR 892 (2158)
Q Consensus 869 GRAGR~g--~d~~G~~iil~~~~~~~ 892 (2158)
||+.-.| ....-.|.++++.-+.-
T Consensus 646 ~k~~~~gn~d~d~~t~~ilytKyD~i 671 (698)
T KOG2340|consen 646 DKTTSQGNTDLDIFTVRILYTKYDRI 671 (698)
T ss_pred hhhhccCCccccceEEEEEeechhhH
Confidence 9975433 33445677777765533
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.7e-05 Score=88.40 Aligned_cols=127 Identities=16% Similarity=0.133 Sum_probs=93.2
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.|++.|-.+.-.+..| -|+...||=|||+++.+++.-....+ ..|=+++...-||..=++.+..++
T Consensus 77 ~p~~vQll~~l~L~~G---~laEm~TGEGKTli~~l~a~~~AL~G-----------~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 77 RPYDVQLLGALALHKG---RLAEMKTGEGKTLIAALPAALNALQG-----------KGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp ---HHHHHHHHHHHTT---SEEEESTTSHHHHHHHHHHHHHHTTS-----------S-EEEEESSHHHHHHHHHHHHHHH
T ss_pred cccHHHHhhhhhcccc---eeEEecCCCCcHHHHHHHHHHHHHhc-----------CCcEEEeccHHHhhccHHHHHHHH
Confidence 6788888887655333 49999999999999988876655443 368888999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCH-hhhccccEEEcchhHH--HHHHhccCC---CccccccceEEeeccccc
Q 000114 575 QMYDVKVRELSGDQTLTR-QQIEETQIIVTTPEKW--DIITRKSGD---RTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~-~~~~~~~IiV~TPekl--d~l~r~~~~---~~~l~~v~lIIiDEaH~l 635 (2158)
..+|++|+..+++.+... +..-.++|+.+|...+ |.+..+... ........++||||||.+
T Consensus 143 ~~LGlsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 143 EFLGLSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp HHTT--EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred HHhhhccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 999999999999887443 3455789999999986 656554321 122467899999999965
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00065 Score=85.97 Aligned_cols=165 Identities=18% Similarity=0.224 Sum_probs=106.9
Q ss_pred CCCHHHHHHHHHHHcC----CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSALSS----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.+-|.|..++..+.-. ..--|+...-|-|||+.-+-.|+..-.......+...... +.++|+|. +|..|+..++
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~-~TLII~Pa-Sli~qW~~Ev 402 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESAS-KTLIICPA-SLIHQWEAEV 402 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccC-CeEEeCcH-HHHHHHHHHH
Confidence 6788999998765532 1236778889999999766555554332222222222233 69999996 7889999999
Q ss_pred HhhcccCCcEEEEEeCCC--ccCHhhhccccEEEcchhHHHH----HHhccCCCcccccc--ceEEeecccccccCChhh
Q 000114 571 SNRLQMYDVKVRELSGDQ--TLTRQQIEETQIIVTTPEKWDI----ITRKSGDRTYTQLV--KLLIIDEIHLLHDNRGPV 642 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~--~~~~~~~~~~~IiV~TPekld~----l~r~~~~~~~l~~v--~lIIiDEaH~l~d~rg~~ 642 (2158)
.+++...-++|..++|.. ....+.+..++|+|||..-... =+...+....+..| ..||+||||.+-+.....
T Consensus 403 ~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~tq~ 482 (901)
T KOG4439|consen 403 ARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNTQC 482 (901)
T ss_pred HHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccchhH
Confidence 999998889999999986 3445667899999999874211 01122223344444 569999999987543322
Q ss_pred HHHHHHHHHHHHhhccccccEEEEcccc
Q 000114 643 LESIVARTVRQIETTKEHIRLVGLSATL 670 (2158)
Q Consensus 643 le~iv~r~~~~~~~~~~~~riv~lSATl 670 (2158)
-. .+.++ ....| -++|+|.
T Consensus 483 S~-AVC~L-------~a~~R-WclTGTP 501 (901)
T KOG4439|consen 483 SK-AVCKL-------SAKSR-WCLTGTP 501 (901)
T ss_pred HH-HHHHH-------hhcce-eecccCc
Confidence 22 23333 22233 6788883
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00079 Score=89.78 Aligned_cols=157 Identities=17% Similarity=0.210 Sum_probs=95.6
Q ss_pred CCCHHHHHHHHHH--hcC-CCcEEEEccCCchhHHHHHHHHHH-HHHhhc---CCCceEEEEEcccHHHHHHHHHHHHHH
Q 000114 1341 HFNPIQTQVFTVL--YNT-DDNVLVAAPTGSGKTICSEFAILR-NHQKAS---ETGVMRAVYIAPLEALAKERYRDWEIK 1413 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l--~~~-~~nvli~ApTGSGKTl~a~l~il~-~l~~~~---~~~~~~~v~IaP~raLa~q~~~~~~~~ 1413 (2158)
.++.+|.+-++-+ ++. +=+-|+|-.-|=|||+...--+.. +..+.. ....+-.+||+|. .|+.-+..+|. +
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~-k 1052 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVK-K 1052 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHH-H
Confidence 5778898877653 232 336899999999999877332222 222100 0111237899997 78888889998 4
Q ss_pred hcCCCCcEEEEEcCCcchh---hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHH
Q 000114 1414 FGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSR 1490 (2158)
Q Consensus 1414 f~~~~g~~v~~ltG~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isr 1490 (2158)
|... ++|..+.|..... ....++++|||++.+.+-+=.-. ..-....++|+||-|-|-..+ ++
T Consensus 1053 f~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~----l~~~~wNYcVLDEGHVikN~k--------tk 1118 (1549)
T KOG0392|consen 1053 FFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY----LIKIDWNYCVLDEGHVIKNSK--------TK 1118 (1549)
T ss_pred hcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH----HHhcccceEEecCcceecchH--------HH
Confidence 5443 6777788865443 33556779999998765321111 112356789999999886433 22
Q ss_pred HHHHHhhcCCCceEEEeccCCCC
Q 000114 1491 MRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1491 l~~i~~~~~~~~riV~lSATl~n 1513 (2158)
+....+++..+.|+|+..+++.|
T Consensus 1119 l~kavkqL~a~hRLILSGTPIQN 1141 (1549)
T KOG0392|consen 1119 LTKAVKQLRANHRLILSGTPIQN 1141 (1549)
T ss_pred HHHHHHHHhhcceEEeeCCCccc
Confidence 22333333446676655555555
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00044 Score=91.63 Aligned_cols=112 Identities=15% Similarity=0.133 Sum_probs=83.1
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCH
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~ 592 (2158)
.-+.-.-||=|||+++.+|+.-....+ ..+.++...-=||.--......++..+|++|+....+++...
T Consensus 95 g~iaEM~TGEGKTL~atlp~ylnaL~g-----------kgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~m~~~e 163 (822)
T COG0653 95 GDIAEMRTGEGKTLVATLPAYLNALAG-----------KGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAGMSPEE 163 (822)
T ss_pred CceeeeecCCchHHHHHHHHHHHhcCC-----------CCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCCCChHH
Confidence 368889999999999999976544332 246677777778888888888888999999999988886654
Q ss_pred -hhhccccEEEcchhHH--HHHHhcc---CCCccccccceEEeeccccc
Q 000114 593 -QQIEETQIIVTTPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 593 -~~~~~~~IiV~TPekl--d~l~r~~---~~~~~l~~v~lIIiDEaH~l 635 (2158)
+..-.++|..+|-..+ |.+.-.. .+..+.....+-|+||++.+
T Consensus 164 k~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSI 212 (822)
T COG0653 164 KRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSI 212 (822)
T ss_pred HHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhe
Confidence 4456899999998775 4443221 22344556788899999865
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0002 Score=96.94 Aligned_cols=142 Identities=18% Similarity=0.258 Sum_probs=84.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH-----hhcc----cCCcEEE
Q 000114 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS-----NRLQ----MYDVKVR 582 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~-----~~~~----~~gi~v~ 582 (2158)
-|+.+.++||+|||.+|+-+|+....... ..+.|++||+.|+-..+...+. ..|. ...+...
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~---------~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~ 130 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYG---------LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELY 130 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcC---------CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEE
Confidence 37999999999999999999988776642 3489999999998777665543 2222 1123444
Q ss_pred EEeCCC-------ccCHh----------hhccccEEEcchhHHHH--HHhccCC------C-cc---cccc-ceEEeecc
Q 000114 583 ELSGDQ-------TLTRQ----------QIEETQIIVTTPEKWDI--ITRKSGD------R-TY---TQLV-KLLIIDEI 632 (2158)
Q Consensus 583 ~l~Gd~-------~~~~~----------~~~~~~IiV~TPekld~--l~r~~~~------~-~~---l~~v-~lIIiDEa 632 (2158)
.+.+.. ..... .....+|+|+|-+.+.. ..+...+ . .. +... -.||+||.
T Consensus 131 ~~~S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEP 210 (986)
T PRK15483 131 VINAGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEP 210 (986)
T ss_pred EEecCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECC
Confidence 444332 11111 01146899999997732 2111101 0 11 1222 27899999
Q ss_pred cccccCChhhHHHHHHHHHHHHhhccccccEEEEccccCC
Q 000114 633 HLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN 672 (2158)
Q Consensus 633 H~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn 672 (2158)
|++... +..++.| . ... +.-++.+|||.++
T Consensus 211 h~~~~~-~k~~~~i-~-------~ln-pl~~lrysAT~~~ 240 (986)
T PRK15483 211 HRFPRD-NKFYQAI-E-------ALK-PQMIIRFGATFPD 240 (986)
T ss_pred CCCCcc-hHHHHHH-H-------hcC-cccEEEEeeecCC
Confidence 998432 2234433 2 223 2235669999986
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00018 Score=97.34 Aligned_cols=143 Identities=16% Similarity=0.219 Sum_probs=84.7
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHH-----HHhcCC-CC--cEEEEEcCCc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE-----IKFGQG-LG--MRVVELTGET 1429 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~-----~~f~~~-~g--~~v~~ltG~~ 1429 (2158)
-|+.+.++||+|||.+|+-.|+..... .+..+.|++||+.++-..+.+-+. ..|... .| +....+.+..
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~---~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k 136 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQK---YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGD 136 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHH---cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCc
Confidence 479999999999999998888877666 222389999999999877765543 334332 22 3334444322
Q ss_pred ---------chhhhcc--------cCCcEEEeCHHHHHHH-H-hhh------hcc-cc---ccce-eEEEecccccccCC
Q 000114 1430 ---------AMDLKLL--------EKGQIIISTPEKWDAL-S-RRW------KQR-KY---VQQV-SLFIIDELHLIGGQ 1479 (2158)
Q Consensus 1430 ---------~~~~~~l--------~~~~IIV~TPe~l~~l-~-r~~------~~~-~~---l~~v-~llIiDEaH~l~~~ 1479 (2158)
....+.+ ..-+|.|+|-+.+..- . +.. .+. .. ++.. -.||+||.|++...
T Consensus 137 ~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~ 216 (986)
T PRK15483 137 KKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD 216 (986)
T ss_pred ccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc
Confidence 1111111 1238999999987541 1 111 011 11 2222 36899999998542
Q ss_pred CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC
Q 000114 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1480 ~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n 1513 (2158)
+..++.+ .. ++ +.-++.+|||.++
T Consensus 217 -~k~~~~i----~~----ln-pl~~lrysAT~~~ 240 (986)
T PRK15483 217 -NKFYQAI----EA----LK-PQMIIRFGATFPD 240 (986)
T ss_pred -hHHHHHH----Hh----cC-cccEEEEeeecCC
Confidence 2233322 21 22 3345679999976
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00026 Score=83.95 Aligned_cols=128 Identities=18% Similarity=0.156 Sum_probs=87.9
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.|++.|-.+.-.+.+ + -|+...||=|||+++.+|+.-.... +. .+-+++...-||..=++.+...|. .+|+
T Consensus 77 ~p~~vQll~~l~L~~-G--~laEm~TGEGKTli~~l~a~~~AL~---G~--~V~vvT~NdyLA~RD~~~~~~~y~-~LGl 147 (266)
T PF07517_consen 77 RPYDVQLLGALALHK-G--RLAEMKTGEGKTLIAALPAALNALQ---GK--GVHVVTSNDYLAKRDAEEMRPFYE-FLGL 147 (266)
T ss_dssp ---HHHHHHHHHHHT-T--SEEEESTTSHHHHHHHHHHHHHHTT---SS---EEEEESSHHHHHHHHHHHHHHHH-HTT-
T ss_pred cccHHHHhhhhhccc-c--eeEEecCCCCcHHHHHHHHHHHHHh---cC--CcEEEeccHHHhhccHHHHHHHHH-Hhhh
Confidence 566666666655533 2 3999999999999998877655544 33 677889999999998888885554 5799
Q ss_pred EEEEEcCCcchh-hhcccCCcEEEeCHHHHHH-HHhh-hhcc---ccccceeEEEeccccccc
Q 000114 1421 RVVELTGETAMD-LKLLEKGQIIISTPEKWDA-LSRR-WKQR---KYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1421 ~v~~ltG~~~~~-~~~l~~~~IIV~TPe~l~~-l~r~-~~~~---~~l~~v~llIiDEaH~l~ 1477 (2158)
+|+..+++.+.. .+..-.++|+++|...+.. .+|. +... ...+...++||||||.+.
T Consensus 148 sv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 148 SVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp -EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred ccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999887654 3345567999999998742 3432 2211 124678999999999654
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.004 Score=79.13 Aligned_cols=173 Identities=20% Similarity=0.221 Sum_probs=108.1
Q ss_pred CCCHHHHHHHHHHhc----CCCcEEEEccCCchhHHHHHHHHHHHHHh-h-----cCCCceEEEEEcccHHHHHHHHHHH
Q 000114 1341 HFNPIQTQVFTVLYN----TDDNVLVAAPTGSGKTICSEFAILRNHQK-A-----SETGVMRAVYIAPLEALAKERYRDW 1410 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~----~~~nvli~ApTGSGKTl~a~l~il~~l~~-~-----~~~~~~~~v~IaP~raLa~q~~~~~ 1410 (2158)
.+-|.|..++.-+.- ...--|+...-|-|||+...-.|+..-.. . .+... +++||||- +|+.|++.++
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~-~TLII~Pa-Sli~qW~~Ev 402 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESAS-KTLIICPA-SLIHQWEAEV 402 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccC-CeEEeCcH-HHHHHHHHHH
Confidence 678899999877653 22347888899999998654333322111 1 01111 58999996 7889999999
Q ss_pred HHHhcCCCCcEEEEEcCCcc--hhhhcccCCcEEEeCHHHHHH----HHhhhhccccccce--eEEEecccccccCCCCC
Q 000114 1411 EIKFGQGLGMRVVELTGETA--MDLKLLEKGQIIISTPEKWDA----LSRRWKQRKYVQQV--SLFIIDELHLIGGQGGP 1482 (2158)
Q Consensus 1411 ~~~f~~~~g~~v~~ltG~~~--~~~~~l~~~~IIV~TPe~l~~----l~r~~~~~~~l~~v--~llIiDEaH~l~~~~g~ 1482 (2158)
.+++... -++|..++|... ...+.++..||||+|..-... -+...+....+.+| .-||+||||.+-+.. .
T Consensus 403 ~~rl~~n-~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~-t 480 (901)
T KOG4439|consen 403 ARRLEQN-ALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSN-T 480 (901)
T ss_pred HHHHhhc-ceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccc-h
Confidence 9888765 689999999874 346788899999999765433 11121222233343 569999999986543 1
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEeccCC-CC-hH---HHHHHhccCC
Q 000114 1483 VLEVIVSRMRYIASQVENKIRIVALSTSL-AN-AK---DLGEWIGATS 1525 (2158)
Q Consensus 1483 ~~e~~isrl~~i~~~~~~~~riV~lSATl-~n-~~---dl~~wl~~~~ 1525 (2158)
.-...+.+++. ..| -++|+|+ .| .- .+..||++.+
T Consensus 481 q~S~AVC~L~a-------~~R-WclTGTPiqNn~~DvysLlrFLr~~p 520 (901)
T KOG4439|consen 481 QCSKAVCKLSA-------KSR-WCLTGTPIQNNLWDVYSLLRFLRCPP 520 (901)
T ss_pred hHHHHHHHHhh-------cce-eecccCccccchhHHHHHHHHhcCCC
Confidence 22234444443 334 4666664 33 22 3445665554
|
|
| >KOG2340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0016 Score=80.19 Aligned_cols=368 Identities=15% Similarity=0.211 Sum_probs=190.0
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchh--HHHHHHHHHHHHHhhc------------C--------------CCce
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGK--TICSEFAILRNHQKAS------------E--------------TGVM 1391 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGK--Tl~a~l~il~~l~~~~------------~--------------~~~~ 1391 (2158)
..+++.|.+.|..+.+-.|-......-|.|+ +-+|.+-+++|+.+.. . -..|
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 4789999999999877566222223334455 5677788888876430 0 0137
Q ss_pred EEEEEcccHHHHHHHHHHHHHHhc-CCCCcE-E-------EEEcCCcch---------h---------------------
Q 000114 1392 RAVYIAPLEALAKERYRDWEIKFG-QGLGMR-V-------VELTGETAM---------D--------------------- 1432 (2158)
Q Consensus 1392 ~~v~IaP~raLa~q~~~~~~~~f~-~~~g~~-v-------~~ltG~~~~---------~--------------------- 1432 (2158)
++|+++|+|+-|-.+.+.+...+. ..-|+. | +.+.|++.. +
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 999999999999999998886633 221111 1 122221100 0
Q ss_pred -----hhcccCCcEEEeCHHHHHHHHhhh----hccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCC---
Q 000114 1433 -----LKLLEKGQIIISTPEKWDALSRRW----KQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN--- 1500 (2158)
Q Consensus 1433 -----~~~l~~~~IIV~TPe~l~~l~r~~----~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~--- 1500 (2158)
...+.++||+||+|=-+-.++... +....++.|.++|||-+|.+.-. .||.+..-+..+-.+ |.
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~Q---NwEhl~~ifdHLn~~-P~k~h 450 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQ---NWEHLLHIFDHLNLQ-PSKQH 450 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHh---hHHHHHHHHHHhhcC-ccccc
Confidence 012346799999998776666521 12337899999999999987643 355555444433222 21
Q ss_pred -----CceE-------------EEeccCCCChHHHHHHhccC---CCceEecCC-----CCc--ccccEEEEecccccc-
Q 000114 1501 -----KIRI-------------VALSTSLANAKDLGEWIGAT---SHGLFNFPP-----GVR--PVPLEIHIQGVDITN- 1551 (2158)
Q Consensus 1501 -----~~ri-------------V~lSATl~n~~dl~~wl~~~---~~~i~~f~~-----~~r--pv~l~~~i~~~~~~~- 1551 (2158)
.+|. +++|+-- + .++...+... -.+...+++ ..+ .+|+...++.+....
T Consensus 451 ~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~-~-~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si 528 (698)
T KOG2340|consen 451 DVDFSRVRMWYLDGQSRYFRQTLLFSRYS-H-PLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSI 528 (698)
T ss_pred CCChhheehheeccHHHHHHHHHHHHhhc-c-HHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCc
Confidence 1222 3333221 1 1111111110 001111110 011 111111111111111
Q ss_pred ---hHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHH
Q 000114 1552 ---FEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEML 1628 (2158)
Q Consensus 1552 ---~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L 1628 (2158)
...++.-........+.. .....+|||+||--.-..+-..+..
T Consensus 529 ~~~~D~RFkyFv~~ImPq~~k--~t~s~~LiyIPSYfDFVRvRNy~K~-------------------------------- 574 (698)
T KOG2340|consen 529 IETPDARFKYFVDKIMPQLIK--RTESGILIYIPSYFDFVRVRNYMKK-------------------------------- 574 (698)
T ss_pred ccCchHHHHHHHHhhchhhcc--cccCceEEEecchhhHHHHHHHhhh--------------------------------
Confidence 111111111111111111 1123479999997654443332211
Q ss_pred HHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCcc--ccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHh
Q 000114 1629 KATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSM--CWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQM 1706 (2158)
Q Consensus 1629 ~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~l--a~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr 1706 (2158)
+.+. ...+|.--+...-.+.-+.|-.|..+||+-|--+ -+-.++.++.-|| +|.+..+ |-=..+++.|
T Consensus 575 -e~i~--F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vV----fYqpP~~---P~FYsEiinm 644 (698)
T KOG2340|consen 575 -EEIS--FVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVV----FYQPPNN---PHFYSEIINM 644 (698)
T ss_pred -hhcc--hHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEE----EecCCCC---cHHHHHHHhh
Confidence 1111 1122333334444566788999999999999753 3456778877777 5665532 2227889999
Q ss_pred hccCCCCC--CCCceEEEEEecCChHHHHHHHhhCCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHH
Q 000114 1707 MGHASRPL--LDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLT 1775 (2158)
Q Consensus 1707 ~GRaGR~g--~d~~G~~iil~~~~~~~~~~k~l~~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~ 1775 (2158)
+||+.-.| ......|.+++..-+. -.|...+-.|-++....++++...|+|
T Consensus 645 ~~k~~~~gn~d~d~~t~~ilytKyD~------------------i~Le~ivGterAA~l~~~kk~v~~f~t 697 (698)
T KOG2340|consen 645 SDKTTSQGNTDLDIFTVRILYTKYDR------------------IRLENIVGTERAAALMSGKKEVYEFVT 697 (698)
T ss_pred hhhhhccCCccccceEEEEEeechhh------------------HHHHHhhhHHHHHHHhccchhhhhhhc
Confidence 99976544 3344566666655331 123445555666666666666655543
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00017 Score=85.39 Aligned_cols=70 Identities=17% Similarity=0.249 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHH-----HhhcCCCceEEEEEcccHHHHHHHHHHHHH
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNH-----QKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l-----~~~~~~~~~~~v~IaP~raLa~q~~~~~~~ 1412 (2158)
++|+-|.+|+..++....-.+|.||.|+|||.+..-.+...+ .....++ ++++++|+.+-+++....+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~--~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGK--KILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS---EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccc--cceeecCCchhHHHHHHHHHh
Confidence 478999999999987544489999999999965543333331 1112344 899999999999999999885
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.021 Score=72.28 Aligned_cols=251 Identities=15% Similarity=0.182 Sum_probs=137.4
Q ss_pred ccCCcEEEeCHHHHHHHHhh----hhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHh---------------
Q 000114 1436 LEKGQIIISTPEKWDALSRR----WKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIAS--------------- 1496 (2158)
Q Consensus 1436 l~~~~IIV~TPe~l~~l~r~----~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~--------------- 1496 (2158)
..++|||||+|=-+-..... -.....+++|.++|+|.||.+.-.. |+.+..-+..+-.
T Consensus 129 Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQN---W~Hv~~v~~~lN~~P~~~~~~DfsRVR~ 205 (442)
T PF06862_consen 129 FYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQN---WEHVLHVFEHLNLQPKKSHDTDFSRVRP 205 (442)
T ss_pred cccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhh---HHHHHHHHHHhccCCCCCCCCCHHHHHH
Confidence 34679999999776554442 2234479999999999999775322 3333222222211
Q ss_pred -----hcCCCceEEEeccCCCChHHHHHHhcc---CCCceEecCCCC--------cccccEEEEecccccch----HHHH
Q 000114 1497 -----QVENKIRIVALSTSLANAKDLGEWIGA---TSHGLFNFPPGV--------RPVPLEIHIQGVDITNF----EARM 1556 (2158)
Q Consensus 1497 -----~~~~~~riV~lSATl~n~~dl~~wl~~---~~~~i~~f~~~~--------rpv~l~~~i~~~~~~~~----~~~~ 1556 (2158)
+...-.|.|++|+.... + +...+.. ...+...+.+.. -.+++...+..++.... ..++
T Consensus 206 w~Ldg~a~~~RQtii~S~~~~p-e-~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf 283 (442)
T PF06862_consen 206 WYLDGQAKYYRQTIIFSSFQTP-E-INSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARF 283 (442)
T ss_pred HHHcCcchheeEeEEecCCCCH-H-HHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHH
Confidence 11124688999987642 1 2221111 111111111111 12233344444443332 2333
Q ss_pred HhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccE
Q 000114 1557 QAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (2158)
Q Consensus 1557 ~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv 1636 (2158)
....+..+..+.. -...+.+|||+||--.=..+-..|. .-....
T Consensus 284 ~yF~~~iLP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk-----------------------------------~~~~sF 327 (442)
T PF06862_consen 284 KYFTKKILPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLK-----------------------------------KENISF 327 (442)
T ss_pred HHHHHHHHHHhhh-ccCCCcEEEEecchhhhHHHHHHHH-----------------------------------hcCCeE
Confidence 3344444444443 2466789999999765433333321 122346
Q ss_pred EEecCCCCHHHHHHHHHHHHcCCceEEEecCcc--ccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCC-C
Q 000114 1637 GYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSM--CWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR-P 1713 (2158)
Q Consensus 1637 ~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~l--a~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR-~ 1713 (2158)
+.+|.-.+..+-.+.-..|..|+.+||+-|-=+ =+-..+.++..|| +|.+..+ |-=..+++.|++.... .
T Consensus 328 ~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~vi----FY~~P~~---p~fY~El~n~~~~~~~~~ 400 (442)
T PF06862_consen 328 VQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVI----FYGPPEN---PQFYSELLNMLDESSGGE 400 (442)
T ss_pred EEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEE----EECCCCC---hhHHHHHHhhhccccccc
Confidence 778888899999999999999999999999642 2334566666666 5555432 1115566666655443 1
Q ss_pred CCCCceEEEEEecCChHHHHH
Q 000114 1714 LLDNSGKCVILCHAPRKEYYK 1734 (2158)
Q Consensus 1714 g~d~~G~~iil~~~~~~~~~~ 1734 (2158)
+....+.|.++++.-+.-.++
T Consensus 401 ~~~~~~~~~~lysk~D~~~LE 421 (442)
T PF06862_consen 401 VDAADATVTVLYSKYDALRLE 421 (442)
T ss_pred ccccCceEEEEecHhHHHHHH
Confidence 113456777777665443333
|
; GO: 0005634 nucleus |
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00031 Score=83.19 Aligned_cols=75 Identities=32% Similarity=0.380 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
+||+-|.+|+..++....-.+|.||.|+|||.+..-.+...+.... ......+.++++++|+.+-+.++...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~---~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFK---SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH----------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchh---hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4799999999988876544899999999999655443333311000 00011345899999999999999999988
|
|
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00027 Score=88.56 Aligned_cols=81 Identities=22% Similarity=0.304 Sum_probs=66.7
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
+|..+||.-|+.|+.++|...= .||.+|.|+|||.+..-.+.+.+..+ .+.|++++|..--+.|+++.+
T Consensus 406 ~~lpkLN~SQ~~AV~~VL~rpl-sLIQGPPGTGKTvtsa~IVyhl~~~~----------~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 406 PNLPKLNASQSNAVKHVLQRPL-SLIQGPPGTGKTVTSATIVYHLARQH----------AGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred CCchhhchHHHHHHHHHHcCCc-eeeecCCCCCceehhHHHHHHHHHhc----------CCceEEEcccchhHHHHHHHH
Confidence 6788999999999999987644 79999999999998877777766654 347999999999999999888
Q ss_pred HhhcccCCcEEEEEeC
Q 000114 571 SNRLQMYDVKVRELSG 586 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~G 586 (2158)
.+. |++|..+..
T Consensus 475 h~t----gLKVvRl~a 486 (935)
T KOG1802|consen 475 HKT----GLKVVRLCA 486 (935)
T ss_pred Hhc----CceEeeeeh
Confidence 763 677766544
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00013 Score=83.12 Aligned_cols=147 Identities=24% Similarity=0.299 Sum_probs=75.0
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH---HHHHHHhcC
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY---RDWEIKFGQ 1416 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~---~~~~~~f~~ 1416 (2158)
.-.|+-|..++.++++ .+.+++.||.|||||+++..+.++.+.. ..-. +++|+-|..+.-.++- -...+++..
T Consensus 3 ~p~~~~Q~~~~~al~~-~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~--kiii~Rp~v~~~~~lGflpG~~~eK~~p 78 (205)
T PF02562_consen 3 KPKNEEQKFALDALLN-NDLVIVNGPAGTGKTFLALAAALELVKE-GEYD--KIIITRPPVEAGEDLGFLPGDLEEKMEP 78 (205)
T ss_dssp ---SHHHHHHHHHHHH--SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-S--EEEEEE-S--TT----SS---------T
T ss_pred cCCCHHHHHHHHHHHh-CCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCc--EEEEEecCCCCccccccCCCCHHHHHHH
Confidence 3468899999999995 6679999999999999999999988877 3444 8899988865411110 000111110
Q ss_pred CCC-c--EEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHH
Q 000114 1417 GLG-M--RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493 (2158)
Q Consensus 1417 ~~g-~--~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~ 1493 (2158)
... + ....+.+. ..-...+.++.|-+..+.- +| ++. ++ -.+||+|||+.+. ...++.
T Consensus 79 ~~~p~~d~l~~~~~~-~~~~~~~~~~~Ie~~~~~~----iR---Grt-~~-~~~iIvDEaQN~t----------~~~~k~ 138 (205)
T PF02562_consen 79 YLRPIYDALEELFGK-EKLEELIQNGKIEIEPLAF----IR---GRT-FD-NAFIIVDEAQNLT----------PEELKM 138 (205)
T ss_dssp TTHHHHHHHTTTS-T-TCHHHHHHTTSEEEEEGGG----GT---T---B--SEEEEE-SGGG------------HHHHHH
T ss_pred HHHHHHHHHHHHhCh-HhHHHHhhcCeEEEEehhh----hc---Ccc-cc-ceEEEEecccCCC----------HHHHHH
Confidence 000 0 00000011 1112234456677776542 22 221 23 2899999999874 345566
Q ss_pred HHhhcCCCceEEEeccC
Q 000114 1494 IASQVENKIRIVALSTS 1510 (2158)
Q Consensus 1494 i~~~~~~~~riV~lSAT 1510 (2158)
+..+.+.+.++|++.-+
T Consensus 139 ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 139 ILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHTTB-TT-EEEEEE--
T ss_pred HHcccCCCcEEEEecCc
Confidence 66666778888887543
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00041 Score=79.15 Aligned_cols=60 Identities=23% Similarity=0.308 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHH
Q 000114 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaL 562 (2158)
++..|.-|..++.+++ ..+.+++.||.|+|||+.++...++.+..+.. -|++|+-|..+.
T Consensus 2 I~p~~~~Q~~~~~al~-~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~---------~kiii~Rp~v~~ 61 (205)
T PF02562_consen 2 IKPKNEEQKFALDALL-NNDLVIVNGPAGTGKTFLALAAALELVKEGEY---------DKIIITRPPVEA 61 (205)
T ss_dssp ----SHHHHHHHHHHH-H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS----------SEEEEEE-S--T
T ss_pred ccCCCHHHHHHHHHHH-hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCC---------cEEEEEecCCCC
Confidence 3457899999999888 55679999999999999999999999876432 389999888754
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0028 Score=84.38 Aligned_cols=129 Identities=16% Similarity=0.122 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcE
Q 000114 1342 FNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMR 1421 (2158)
Q Consensus 1342 ~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~ 1421 (2158)
++|+=.|.+-.+.. ...-+.-+-||=|||+++.+|+.-.-.. +. .+-++...-=||.--..... .+-..+|++
T Consensus 79 ~~~~dVQliG~i~l-h~g~iaEM~TGEGKTL~atlp~ylnaL~---gk--gVhvVTvNdYLA~RDae~m~-~l~~~LGls 151 (822)
T COG0653 79 MRHFDVQLLGGIVL-HLGDIAEMRTGEGKTLVATLPAYLNALA---GK--GVHVVTVNDYLARRDAEWMG-PLYEFLGLS 151 (822)
T ss_pred CChhhHHHhhhhhh-cCCceeeeecCCchHHHHHHHHHHHhcC---CC--CcEEeeehHHhhhhCHHHHH-HHHHHcCCc
Confidence 44444555555432 3346889999999999999988633222 33 45566666666665555444 444457999
Q ss_pred EEEEcCCcchh-hhcccCCcEEEeCHHHHH-HHHhh----hhccccccceeEEEeccccccc
Q 000114 1422 VVELTGETAMD-LKLLEKGQIIISTPEKWD-ALSRR----WKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1422 v~~ltG~~~~~-~~~l~~~~IIV~TPe~l~-~l~r~----~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
|+....+.+.. .+..-.+||..+|-..+. +.+|- ...........+.|+||++.++
T Consensus 152 vG~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 152 VGVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred eeeccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 99988877665 445567799999987662 12221 1122344567888999998553
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0009 Score=76.98 Aligned_cols=64 Identities=25% Similarity=0.398 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHcCCCc-EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSALSSADN-ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~n-vlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~ 569 (2158)
+||+-|.+++..++.++++ .+|+||.|+|||.+. -.+...+... +.++++++||...+.+..+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~----------g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEAA----------GKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHHT----------T--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHhC----------CCeEEEECCcHHHHHHHHHh
Confidence 4799999999999877665 577899999999753 3355555442 35899999999988876655
|
|
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0006 Score=85.53 Aligned_cols=79 Identities=20% Similarity=0.333 Sum_probs=62.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
++..+|.-|..|+..+++..= .||.+|+|+|||+...--++ ++.+. ..+ .+++.+|+.--++|.++.+.+
T Consensus 407 ~lpkLN~SQ~~AV~~VL~rpl-sLIQGPPGTGKTvtsa~IVy-hl~~~-~~~--~VLvcApSNiAVDqLaeKIh~----- 476 (935)
T KOG1802|consen 407 NLPKLNASQSNAVKHVLQRPL-SLIQGPPGTGKTVTSATIVY-HLARQ-HAG--PVLVCAPSNIAVDQLAEKIHK----- 476 (935)
T ss_pred CchhhchHHHHHHHHHHcCCc-eeeecCCCCCceehhHHHHH-HHHHh-cCC--ceEEEcccchhHHHHHHHHHh-----
Confidence 578999999999999998444 89999999999988754444 44442 344 899999999999999998873
Q ss_pred CCcEEEEEc
Q 000114 1418 LGMRVVELT 1426 (2158)
Q Consensus 1418 ~g~~v~~lt 1426 (2158)
.|++|..+.
T Consensus 477 tgLKVvRl~ 485 (935)
T KOG1802|consen 477 TGLKVVRLC 485 (935)
T ss_pred cCceEeeee
Confidence 267776654
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0014 Score=75.36 Aligned_cols=64 Identities=23% Similarity=0.327 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHhcCCCc-EEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHH
Q 000114 1341 HFNPIQTQVFTVLYNTDDN-VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~n-vli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~ 1409 (2158)
+||+-|.+++..++.++++ ++|.||.|+|||.+. -.+.+.+.. .+. ++++++||...+.+..+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~--~g~--~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA--AGK--RVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH--TT----EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh--CCC--eEEEECCcHHHHHHHHHh
Confidence 4789999999999876654 667799999999754 445555555 233 899999999988875554
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.002 Score=86.67 Aligned_cols=68 Identities=31% Similarity=0.383 Sum_probs=56.7
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
..||+.|.+|+..++...+.++|.||+|+|||.+..-.+.+.+.. +.+|++++|+..-|.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~-----------g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR-----------GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc-----------CCCEEEEcCcHHHHHHHHHHHHh
Confidence 468999999999999887889999999999998776555555443 23799999999999999988876
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0047 Score=81.58 Aligned_cols=126 Identities=22% Similarity=0.283 Sum_probs=80.8
Q ss_pred CCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
++.++|..-+... ++++=|-|+.-.+|-|||..-+-.| -.+..++...| --++|+|+-.|.+ +..+|.
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLi-tYLmE~K~~~G-------P~LvivPlstL~N-W~~Ef~ 464 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLI-TYLMEHKQMQG-------PFLIIVPLSTLVN-WSSEFP 464 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHH-HHHHHHcccCC-------CeEEeccccccCC-chhhcc
Confidence 7888998887654 5666688999999999997654333 33444332222 2477899988754 344454
Q ss_pred hhcccCCcEEEEEeCCCccCH----hh-hccccEEEcchhHHHHHHhccCCCcccccc--ceEEeeccccccc
Q 000114 572 NRLQMYDVKVRELSGDQTLTR----QQ-IEETQIIVTTPEKWDIITRKSGDRTYTQLV--KLLIIDEIHLLHD 637 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~----~~-~~~~~IiV~TPekld~l~r~~~~~~~l~~v--~lIIiDEaH~l~d 637 (2158)
.+.. .+..+.+.|...... +. ..+.+|++||.|.+ .+ +...++.| .++||||-|+|..
T Consensus 465 kWaP--Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyi---ik---dk~lLsKI~W~yMIIDEGHRmKN 529 (1157)
T KOG0386|consen 465 KWAP--SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYI---IK---DKALLSKISWKYMIIDEGHRMKN 529 (1157)
T ss_pred cccc--ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHh---cC---CHHHHhccCCcceeecccccccc
Confidence 4322 455666666433221 11 35789999999963 22 33444444 5899999999864
|
|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0021 Score=73.94 Aligned_cols=132 Identities=20% Similarity=0.269 Sum_probs=93.0
Q ss_pred CCCHHHHHHHHHHhc--CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1341 HFNPIQTQVFTVLYN--TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~--~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
..+|.|.++...+.+ ++.|.+...-.|.|||.+. +|++..... ++. .-+.+++| ++|..|.++.+.++|+...
T Consensus 23 liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LA--dg~-~LvrviVp-k~Ll~q~~~~L~~~lg~l~ 97 (229)
T PF12340_consen 23 LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALA--DGS-RLVRVIVP-KALLEQMRQMLRSRLGGLL 97 (229)
T ss_pred eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHc--CCC-cEEEEEcC-HHHHHHHHHHHHHHHHHHh
Confidence 689999999999886 3578999999999999887 788776665 233 13445555 5799999999999999888
Q ss_pred CcEEEEEcCCc--chhh-----------hcccCCcEEEeCHHHHHHHHhhhhc----------------cccccceeEEE
Q 000114 1419 GMRVVELTGET--AMDL-----------KLLEKGQIIISTPEKWDALSRRWKQ----------------RKYVQQVSLFI 1469 (2158)
Q Consensus 1419 g~~v~~ltG~~--~~~~-----------~~l~~~~IIV~TPe~l~~l~r~~~~----------------~~~l~~v~llI 1469 (2158)
+.+|..+.=+. ..+. .....+.|+++|||.+.++.-.+.. ..+++....=|
T Consensus 98 ~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdi 177 (229)
T PF12340_consen 98 NRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDI 177 (229)
T ss_pred CCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeE
Confidence 88877664322 2211 1224568999999998765422210 11344556678
Q ss_pred eccccccc
Q 000114 1470 IDELHLIG 1477 (2158)
Q Consensus 1470 iDEaH~l~ 1477 (2158)
+||+|.+.
T Consensus 178 lDEsDe~L 185 (229)
T PF12340_consen 178 LDESDEIL 185 (229)
T ss_pred eECchhcc
Confidence 99999765
|
There are two conserved sequence motifs: LLE and NMG. |
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0022 Score=77.92 Aligned_cols=154 Identities=18% Similarity=0.249 Sum_probs=101.1
Q ss_pred CCCHHHHHHHHHHhcCCC----cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000114 1341 HFNPIQTQVFTVLYNTDD----NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~----nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~ 1416 (2158)
.+-|+|.+-+.-+....+ --|+.-.-|-|||+.+.-.++... ... ..++++|+.+|. |+.+++. ++..
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~----~ra--~tLVvaP~VAlm-QW~nEI~-~~T~ 255 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV----DRA--PTLVVAPTVALM-QWKNEIE-RHTS 255 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc----ccC--CeeEEccHHHHH-HHHHHHH-Hhcc
Confidence 567888887765443222 246778899999988855555322 223 689999999975 6666666 3433
Q ss_pred CCCcEEEEEcCCcc-hhhhcccCCcEEEeCHHHHHHHHhhhhc-----------cccccce--eEEEecccccccCCCCC
Q 000114 1417 GLGMRVVELTGETA-MDLKLLEKGQIIISTPEKWDALSRRWKQ-----------RKYVQQV--SLFIIDELHLIGGQGGP 1482 (2158)
Q Consensus 1417 ~~g~~v~~ltG~~~-~~~~~l~~~~IIV~TPe~l~~l~r~~~~-----------~~~l~~v--~llIiDEaH~l~~~~g~ 1482 (2158)
...++..++|... .+.+.+.+.+++++|...+.+..|+-.. ...+.++ .-+|+||||.+-+.+..
T Consensus 256 -gslkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~sn 334 (791)
T KOG1002|consen 256 -GSLKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSN 334 (791)
T ss_pred -CceEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccccccccc
Confidence 3578888998643 4577888999999999988888776211 1234444 45999999999764433
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEeccCCC
Q 000114 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2158)
Q Consensus 1483 ~~e~~isrl~~i~~~~~~~~riV~lSATl~ 1512 (2158)
+-..+.. ++ ..+-.+||.|+-
T Consensus 335 TArAV~~-L~--------tt~rw~LSGTPL 355 (791)
T KOG1002|consen 335 TARAVFA-LE--------TTYRWCLSGTPL 355 (791)
T ss_pred HHHHHHh-hH--------hhhhhhccCCcc
Confidence 3332221 11 234478888853
|
|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.004 Score=82.21 Aligned_cols=84 Identities=15% Similarity=0.136 Sum_probs=64.1
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcC---CceEEEecCccccccCCC-ccEEEEecceeecCCCCcCcCCCHHHHHHhhccC
Q 000114 1635 GVGYLHEGLNKTDQEVVSALFEAG---KIKVCVMSSSMCWGVPLT-AHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHA 1710 (2158)
Q Consensus 1635 gv~~~H~~l~~~dR~~v~~~F~~g---~i~VLVaT~~la~Gvdlp-~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRa 1710 (2158)
....+.|....++|-..++.|..- -...|.+|...+.|+|+. +.+||| | +.+..+...+|+--||
T Consensus 752 kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtvii-----f------dsdwnp~~d~qaqdra 820 (1157)
T KOG0386|consen 752 KYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVII-----F------DSDWNPHQDLQAQDRA 820 (1157)
T ss_pred heeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEE-----e------cCCCCchhHHHHHHHH
Confidence 455667888899999999999854 356889999999999998 566776 3 3344567778888888
Q ss_pred CCCCCCCceEEEEEecCCh
Q 000114 1711 SRPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1711 GR~g~d~~G~~iil~~~~~ 1729 (2158)
-|.|..+...++.++.-..
T Consensus 821 hrigq~~evRv~rl~tv~s 839 (1157)
T KOG0386|consen 821 HRIGQKKEVRVLRLITVNS 839 (1157)
T ss_pred HHhhchhheeeeeeehhhH
Confidence 8888667777777766553
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00097 Score=77.99 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ka 561 (2158)
++...|..|...+..+.. .+.+++.||+|+|||+.+....++.+..+. --++++.=|...
T Consensus 56 ~i~p~n~~Q~~~l~al~~-~~lV~i~G~aGTGKT~La~a~a~~~l~~~~---------~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIES-KQLIFATGEAGCGKTWISAAKAAEALIHKD---------VDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHhc-CCeEEEECCCCCCHHHHHHHHHHHHHhcCC---------eeEEEEeCCCCC
Confidence 566779999999886654 578999999999999999888887664321 125666667654
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0024 Score=86.04 Aligned_cols=68 Identities=21% Similarity=0.233 Sum_probs=55.0
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHH
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~ 1412 (2158)
..+|+.|.+|+..++.+.+.++|.||+|+|||.+..-.+. .+.. .+. ++++++|+..-+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~-~~~~--~g~--~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIR-QLVK--RGL--RVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHH-HHHH--cCC--CEEEEcCcHHHHHHHHHHHHh
Confidence 5789999999999988778899999999999977644333 3333 133 899999999999999988874
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.023 Score=72.03 Aligned_cols=81 Identities=21% Similarity=0.153 Sum_probs=63.7
Q ss_pred ecCCCCHHHHHHHHHHHhCCCce-EEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCC
Q 000114 800 HHAGMTRGDRQLVEDLFGDGHVQ-VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDS 878 (2158)
Q Consensus 800 hHagl~~~~R~~v~~~F~~g~i~-VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~ 878 (2158)
+.|.....+|..+...|....+- .|.+|-+.+-|||+.+.+.||-++.-|+|.- =.|.+-||-|-|...
T Consensus 1074 LDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~----------D~QAMDRAHRLGQTr 1143 (1185)
T KOG0388|consen 1074 LDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTA----------DQQAMDRAHRLGQTR 1143 (1185)
T ss_pred ecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecCCCCcch----------hhHHHHHHHhccCcc
Confidence 37888889999999999886664 4789999999999999999998777777663 467777888877655
Q ss_pred ccEEEEEcCCCc
Q 000114 879 YGEGIIITGHSE 890 (2158)
Q Consensus 879 ~G~~iil~~~~~ 890 (2158)
.-.+|.+.....
T Consensus 1144 dvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1144 DVTVYRLITRGT 1155 (1185)
T ss_pred ceeeeeeccccc
Confidence 556666666544
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0023 Score=61.35 Aligned_cols=61 Identities=25% Similarity=0.393 Sum_probs=43.7
Q ss_pred HHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 503 VYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 503 ~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
++..++.++.-++|.||.|||||.+..-.+...+..... .+.++++++|++..+.++.+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~-------~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARAD-------PGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-------CCCeEEEECCCHHHHHHHHHHH
Confidence 455555644445669999999997776666666643111 1347999999999999988887
|
|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.001 Score=74.43 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=78.4
Q ss_pred cCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHH
Q 000114 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2158)
Q Consensus 1573 ~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~ 1652 (2158)
..+.+|||++|.+..+.+...+.... ...++.++.. ...++..++
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~---------------------------------~~~~~~v~~q--~~~~~~~~l 52 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERL---------------------------------EEKGIPVFVQ--GSKSRDELL 52 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS----------------------------------E-ETSCEEES--TCCHHHHHH
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhc---------------------------------ccccceeeec--CcchHHHHH
Confidence 35789999999998887775442110 0112233333 356788899
Q ss_pred HHHHcCCceEEEecC--ccccccCCC---ccEEEEecceeecCCC-------------------CcCcCCCHHHHHHhhc
Q 000114 1653 ALFEAGKIKVCVMSS--SMCWGVPLT---AHLVVVMGTQYYDGQE-------------------NAHTDYPVTDLLQMMG 1708 (2158)
Q Consensus 1653 ~~F~~g~i~VLVaT~--~la~Gvdlp---~~~vVI~gt~~yd~~~-------------------~~~~~~s~~~~lQr~G 1708 (2158)
+.|+.+.-.||+|+. .+..|||+| ...|||.|.++-.+.. ..+.+.-+..+.|.+|
T Consensus 53 ~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~G 132 (167)
T PF13307_consen 53 EEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIG 132 (167)
T ss_dssp HHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHH
T ss_pred HHHHhccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcC
Confidence 999999999999998 999999999 4567777877643320 1122233567789999
Q ss_pred cCCCCCCCCceEEEEEecCChHHHHHHHhh
Q 000114 1709 HASRPLLDNSGKCVILCHAPRKEYYKKFLY 1738 (2158)
Q Consensus 1709 RaGR~g~d~~G~~iil~~~~~~~~~~k~l~ 1738 (2158)
|+-|.. +..|.++++-..-....|.+.+.
T Consensus 133 R~iR~~-~D~g~i~llD~R~~~~~y~~~l~ 161 (167)
T PF13307_consen 133 RLIRSE-DDYGVIILLDSRFLSKRYGKYLP 161 (167)
T ss_dssp CC--ST-T-EEEEEEESGGGGGHHHHHH-T
T ss_pred cceecc-CCcEEEEEEcCccccchhhhcCc
Confidence 999976 55676666655444444554443
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.037 Score=79.20 Aligned_cols=333 Identities=18% Similarity=0.121 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHh-c---CCCcEEEEccCCchhHHHHHHHHHHHHHhhcC-CCceEEEEEcccHHHHHHHHHHHHHH
Q 000114 1339 FKHFNPIQTQVFTVLY-N---TDDNVLVAAPTGSGKTICSEFAILRNHQKASE-TGVMRAVYIAPLEALAKERYRDWEIK 1413 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~-~---~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~-~~~~~~v~IaP~raLa~q~~~~~~~~ 1413 (2158)
...+.++|.+.++-+. . ...+.+++..-|-|||+.....+......... .+ .+++++|+ +++..+.+++. +
T Consensus 336 ~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~--~~liv~p~-s~~~nw~~e~~-k 411 (866)
T COG0553 336 SAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLG--PALIVVPA-SLLSNWKREFE-K 411 (866)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCC--CeEEEecH-HHHHHHHHHHh-h
Q ss_pred hcCCCCcEEEEEcCCc------chhhhcccC------CcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCC
Q 000114 1414 FGQGLGMRVVELTGET------AMDLKLLEK------GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2158)
Q Consensus 1414 f~~~~g~~v~~ltG~~------~~~~~~l~~------~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g 1481 (2158)
|...... +....|.. ......+.. .+++++|-+.+.... .-.....-.....+|+||+|.+.+..+
T Consensus 412 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~-~~~~~l~~~~~~~~v~DEa~~ikn~~s 489 (866)
T COG0553 412 FAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFL-VDHGGLKKIEWDRVVLDEAHRIKNDQS 489 (866)
T ss_pred hCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhh-hhHHHHhhceeeeeehhhHHHHhhhhh
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEeccCC-CC----hHHHHH-HhccCCCc----------------------------
Q 000114 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSL-AN----AKDLGE-WIGATSHG---------------------------- 1527 (2158)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riV~lSATl-~n----~~dl~~-wl~~~~~~---------------------------- 1527 (2158)
.....+. .++ ....+++|.|+ .| ...+.+ ++......
T Consensus 490 ~~~~~l~-~~~--------~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 560 (866)
T COG0553 490 SEGKALQ-FLK--------ALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEAREL 560 (866)
T ss_pred HHHHHHH-HHh--------hcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHH
Q ss_pred ----------------------eEecCCCCcccccEEEEecccccchHHHHH----------------------------
Q 000114 1528 ----------------------LFNFPPGVRPVPLEIHIQGVDITNFEARMQ---------------------------- 1557 (2158)
Q Consensus 1528 ----------------------i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~---------------------------- 1557 (2158)
+..--|.................-+.....
T Consensus 561 ~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (866)
T COG0553 561 GIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELN 640 (866)
T ss_pred HHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhH
Q ss_pred ---------------------------------------------------hcChHHHHHH-HHhHhcCC--CEEEEecC
Q 000114 1558 ---------------------------------------------------AMTKPTFTAI-VQHAKNEK--PALVFVPS 1583 (2158)
Q Consensus 1558 ---------------------------------------------------~~~k~~~~~i-~~~~~~~~--~~IVFv~s 1583 (2158)
.........+ ......+. +++||+.-
T Consensus 641 ~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~ 720 (866)
T COG0553 641 ILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQF 720 (866)
T ss_pred HHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCc
Q ss_pred hHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcC--Cce
Q 000114 1584 RKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAG--KIK 1661 (2158)
Q Consensus 1584 r~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g--~i~ 1661 (2158)
......+...+ .........++|+++...|....+.|.++ ..-
T Consensus 721 t~~l~il~~~l-----------------------------------~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v 765 (866)
T COG0553 721 TPVLDLLEDYL-----------------------------------KALGIKYVRLDGSTPAKRRQELIDRFNADEEEKV 765 (866)
T ss_pred HHHHHHHHHHH-----------------------------------HhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCce
Q ss_pred EEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH
Q 000114 1662 VCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2158)
Q Consensus 1662 VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~ 1731 (2158)
.+++|.+.+.|+|+-...+|| +++.+..+....|.+.||.|.|..+.-.++-+......+
T Consensus 766 ~lls~kagg~glnLt~a~~vi----------~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiE 825 (866)
T COG0553 766 FLLSLKAGGLGLNLTGADTVI----------LFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIE 825 (866)
T ss_pred EEEEecccccceeecccceEE----------EeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHH
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0036 Score=59.98 Aligned_cols=60 Identities=22% Similarity=0.197 Sum_probs=41.5
Q ss_pred HHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhh-cCCCceEEEEEcccHHHHHHHHHHH
Q 000114 1349 VFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDW 1410 (2158)
Q Consensus 1349 ~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~-~~~~~~~~v~IaP~raLa~q~~~~~ 1410 (2158)
++...+.++.-++|.||.|||||....-.+...+... ..+. ++++++|++..++++.+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~--~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGK--RVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCC--eEEEECCCHHHHHHHHHHH
Confidence 4443344445456699999999977755555555321 1233 8999999999999888776
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.018 Score=67.61 Aligned_cols=143 Identities=15% Similarity=0.202 Sum_probs=81.6
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHH----------HHHH
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA----------KERY 1407 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa----------~q~~ 1407 (2158)
++.-.|..|...+..+.+ .+.+++.||+|+|||+++....++.+.. ..-. ++++.-|..+.. .+.+
T Consensus 56 ~i~p~n~~Q~~~l~al~~-~~lV~i~G~aGTGKT~La~a~a~~~l~~-~~~~--kIiI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 56 PILARNEAQAHYLKAIES-KQLIFATGEAGCGKTWISAAKAAEALIH-KDVD--RIIVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred cccCCCHHHHHHHHHHhc-CCeEEEECCCCCCHHHHHHHHHHHHHhc-CCee--EEEEeCCCCCchhhhCcCCCCHHHHH
Confidence 356678899999988866 5689999999999999997777766644 2222 667776765422 1222
Q ss_pred HHHHHHhcCCCCcEEEEEcCCcchhhhc--ccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHH
Q 000114 1408 RDWEIKFGQGLGMRVVELTGETAMDLKL--LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (2158)
Q Consensus 1408 ~~~~~~f~~~~g~~v~~ltG~~~~~~~~--l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e 1485 (2158)
.-|-.-+-..+.. +.|.... .+. ...+.|-|.... .+|. +. + +-++||+|||+.+.
T Consensus 132 ~p~~~pi~D~L~~----~~~~~~~-~~~~~~~~~~Iei~~l~----ymRG---rt-l-~~~~vIvDEaqn~~-------- 189 (262)
T PRK10536 132 APYFRPVYDVLVR----RLGASFM-QYCLRPEIGKVEIAPFA----YMRG---RT-F-ENAVVILDEAQNVT-------- 189 (262)
T ss_pred HHHHHHHHHHHHH----HhChHHH-HHHHHhccCcEEEecHH----HhcC---Cc-c-cCCEEEEechhcCC--------
Confidence 2222111111000 1111111 111 134556666533 2332 22 2 23799999999885
Q ss_pred HHHHHHHHHHhhcCCCceEEEec
Q 000114 1486 VIVSRMRYIASQVENKIRIVALS 1508 (2158)
Q Consensus 1486 ~~isrl~~i~~~~~~~~riV~lS 1508 (2158)
...++.+....+.+.++|++.
T Consensus 190 --~~~~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 190 --AAQMKMFLTRLGENVTVIVNG 210 (262)
T ss_pred --HHHHHHHHhhcCCCCEEEEeC
Confidence 234444555557788887764
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0085 Score=64.03 Aligned_cols=121 Identities=19% Similarity=0.291 Sum_probs=57.9
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEE-cccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI-APLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK 1434 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~I-aP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~ 1434 (2158)
++..++|.||+|+|||.+....+-...........+.++++ +|...-....+..+...++.....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-------------- 68 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-------------- 68 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS--------------
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc--------------
Confidence 34568999999999998875544433221100112244443 444332445555555455432100
Q ss_pred cccCCcEEEeCHHHHHHHH-hhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccC
Q 000114 1435 LLEKGQIIISTPEKWDALS-RRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTS 1510 (2158)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~l~-r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSAT 1510 (2158)
-.|+..+...+ +.+.. ....++||||+|.+. . ...+..++.+.. ..++++|+.+.+
T Consensus 69 --------~~~~~~l~~~~~~~l~~----~~~~~lviDe~~~l~--~----~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 --------RQTSDELRSLLIDALDR----RRVVLLVIDEADHLF--S----DEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp --------TS-HHHHHHHHHHHHHH----CTEEEEEEETTHHHH--T----HHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred --------cCCHHHHHHHHHHHHHh----cCCeEEEEeChHhcC--C----HHHHHHHHHHHh--CCCCeEEEEECh
Confidence 11222222222 22211 223799999999974 1 335555555544 456666665543
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.004 Score=82.28 Aligned_cols=137 Identities=15% Similarity=0.223 Sum_probs=92.2
Q ss_pred CCCHHHHHHHH---HHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc-CCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000114 1341 HFNPIQTQVFT---VLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2158)
Q Consensus 1341 ~~~~iQ~q~~~---~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~-~~~~~~~v~IaP~raLa~q~~~~~~~~f~~ 1416 (2158)
.++.+|..-++ .+|+.+-|-|+.-.-|-|||+.. +.+|.|+.... .-| --+||+||-.+.+ +--+++ +++
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQt-ISllAhLACeegnWG--PHLIVVpTsviLn-WEMElK-Rwc- 688 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQT-ISLLAHLACEEGNWG--PHLIVVPTSVILN-WEMELK-RWC- 688 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHH-HHHHHHHHhcccCCC--CceEEeechhhhh-hhHHHh-hhC-
Confidence 67778876654 47888889999999999999876 66666776632 223 4588999966553 222344 444
Q ss_pred CCCcEEEEEcCCcchh---hhcccCC---cEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHH
Q 000114 1417 GLGMRVVELTGETAMD---LKLLEKG---QIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2158)
Q Consensus 1417 ~~g~~v~~ltG~~~~~---~~~l~~~---~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~i 1488 (2158)
.|+++..+.|..... .+-+.++ ||.|++...+..-.+.++. ++..++|+||+|.|-+.....|+.++
T Consensus 689 -PglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkr----krWqyLvLDEaqnIKnfksqrWQAll 761 (1958)
T KOG0391|consen 689 -PGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKR----KRWQYLVLDEAQNIKNFKSQRWQALL 761 (1958)
T ss_pred -CcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHh----hccceeehhhhhhhcchhHHHHHHHh
Confidence 389999999865432 2333333 8888887766443333322 46789999999999876655565554
|
|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.015 Score=69.45 Aligned_cols=161 Identities=17% Similarity=0.106 Sum_probs=99.1
Q ss_pred CCCHHHHHHHHHHHcC---------CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH
Q 000114 495 QLNRVQSRVYKSALSS---------ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~---------~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q 565 (2158)
.|...|-+++--+.+. +.-.++--.||.||.-...-.|+..+.+++ .|.|+++..-.|-.+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr----------~r~vwvS~s~dL~~D 106 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR----------KRAVWVSVSNDLKYD 106 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC----------CceEEEECChhhhhH
Confidence 5788898887555321 234788889999998877777777777653 379999999999999
Q ss_pred HHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhcc-CCCcccc---------ccceEEeeccccc
Q 000114 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS-GDRTYTQ---------LVKLLIIDEIHLL 635 (2158)
Q Consensus 566 ~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~-~~~~~l~---------~v~lIIiDEaH~l 635 (2158)
..+.|+.+... .+.+..+..- .......-...|+++|.-.+..-.+.. .....++ .=.+||+||||..
T Consensus 107 a~RDl~DIG~~-~i~v~~l~~~-~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~a 184 (303)
T PF13872_consen 107 AERDLRDIGAD-NIPVHPLNKF-KYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKA 184 (303)
T ss_pred HHHHHHHhCCC-cccceechhh-ccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhc
Confidence 99999986543 3444433321 111111124569999988763332110 1111111 1258999999988
Q ss_pred ccC-C----hhhHHHHHHHHHHHHhhccccccEEEEccccC
Q 000114 636 HDN-R----GPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (2158)
Q Consensus 636 ~d~-r----g~~le~iv~r~~~~~~~~~~~~riv~lSATlp 671 (2158)
... . +......+..+ ...-++.|+|.+|||-.
T Consensus 185 kn~~~~~~~~sk~g~avl~L----Q~~LP~ARvvY~SATga 221 (303)
T PF13872_consen 185 KNLSSGSKKPSKTGIAVLEL----QNRLPNARVVYASATGA 221 (303)
T ss_pred CCCCccCccccHHHHHHHHH----HHhCCCCcEEEeccccc
Confidence 652 2 12222222222 22346789999999943
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.079 Score=72.65 Aligned_cols=52 Identities=27% Similarity=0.328 Sum_probs=46.0
Q ss_pred ccccCCCCHHHHHHHHhCCCCchhhccCChHHhhhhhcCchhHHHHHHHHhc
Q 000114 1144 LRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQ 1195 (2158)
Q Consensus 1144 l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 1195 (2158)
|+.||||++..+++|-.+==+++++..++.+||.+++|.++.|+.|+++++.
T Consensus 759 L~~lPgI~~~~a~~ll~~f~si~~l~~as~eeL~~~iG~~~~A~~i~~fl~~ 810 (814)
T TIGR00596 759 LLKLPGVTKKNYRNLRKKVKSIRELAKLSQNELNELIGDEEAAKRLYDFLRT 810 (814)
T ss_pred HHHCCCCCHHHHHHHHHHcCCHHHHHhCCHHHHHHHhCCHHHHHHHHHHhcc
Confidence 7799999999999987763378888899999999999988999999999885
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.005 Score=69.02 Aligned_cols=127 Identities=19% Similarity=0.286 Sum_probs=76.2
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHH
Q 000114 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2158)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v 812 (2158)
++.+|||++|....+.+...+...... .++.++.. ...++..+
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~-----------------------------------~~~~v~~q--~~~~~~~~ 51 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEE-----------------------------------KGIPVFVQ--GSKSRDEL 51 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E------------------------------------ETSCEEES--TCCHHHHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhccc-----------------------------------ccceeeec--CcchHHHH
Confidence 589999999999888887766543211 01112222 35578889
Q ss_pred HHHHhCCCceEEEech--hhhhccCCCc--eEEEEecccccCCCCC----------------cc----ccCCHHHHHHhh
Q 000114 813 EDLFGDGHVQVLVSTA--TLAWGVNLPA--HTVIIKGTQIYNPEKG----------------AW----TELSPLDIMQML 868 (2158)
Q Consensus 813 ~~~F~~g~i~VLVaT~--tla~GVdlP~--v~vVI~~~~~yd~~~g----------------~~----~~~s~~~~~Qr~ 868 (2158)
.+.|+++.-.||+|+. .++.|||+|+ .+.||-...||-++.. .+ .+-....+.|.+
T Consensus 52 l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~ 131 (167)
T PF13307_consen 52 LEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAI 131 (167)
T ss_dssp HHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHH
T ss_pred HHHHHhccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhc
Confidence 9999999999999999 9999999996 4556666677754431 01 112335678999
Q ss_pred cccCCCCCCCccEEEEEcCCCcHHHHHHh
Q 000114 869 GRAGRPQYDSYGEGIIITGHSELRYYLSL 897 (2158)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~~~~~y~~l 897 (2158)
||+-|... ..|..+++-..-....|.+.
T Consensus 132 GR~iR~~~-D~g~i~llD~R~~~~~y~~~ 159 (167)
T PF13307_consen 132 GRLIRSED-DYGVIILLDSRFLSKRYGKY 159 (167)
T ss_dssp HCC--STT--EEEEEEESGGGGGHHHHHH
T ss_pred CcceeccC-CcEEEEEEcCccccchhhhc
Confidence 99999654 46666665544333444443
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.024 Score=75.49 Aligned_cols=153 Identities=14% Similarity=0.184 Sum_probs=83.7
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcC-CCceEEEEEcccHHHHHHHHHH
Q 000114 1331 LYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE-TGVMRAVYIAPLEALAKERYRD 1409 (2158)
Q Consensus 1331 ~~~~l~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~-~~~~~~v~IaP~raLa~q~~~~ 1409 (2158)
.+..+|.... -...|+.|+..++.+ .-++|.|+.|+|||.+.. .++..+....+ .+..++++.+||---+....+.
T Consensus 136 ~l~~~~~~~~-~~~~Qk~A~~~al~~-~~~vitGgpGTGKTt~v~-~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~ 212 (586)
T TIGR01447 136 ILENLFPLLN-EQNWQKVAVALALKS-NFSLITGGPGTGKTTTVA-RLLLALVKQSPKQGKLRIALAAPTGKAAARLAES 212 (586)
T ss_pred HHHHhhcccc-ccHHHHHHHHHHhhC-CeEEEEcCCCCCHHHHHH-HHHHHHHHhccccCCCcEEEECCcHHHHHHHHHH
Confidence 3445554221 237999999999874 559999999999997652 23333322111 1124799999998888777666
Q ss_pred HHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhh---hh-ccccccceeEEEecccccccCCCCChHH
Q 000114 1410 WEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRR---WK-QRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (2158)
Q Consensus 1410 ~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~---~~-~~~~l~~v~llIiDEaH~l~~~~g~~~e 1485 (2158)
....+... +.. . + ......+-..|-.++...... +. .......+++|||||+=++..
T Consensus 213 ~~~~~~~l-~~~-----~----~--~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~------- 273 (586)
T TIGR01447 213 LRKAVKNL-AAA-----E----A--LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL------- 273 (586)
T ss_pred HHhhhccc-ccc-----h----h--hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH-------
Confidence 65433211 100 0 0 000001123333333221110 00 112234689999999998851
Q ss_pred HHHHHHHHHHhhcCCCceEEEec
Q 000114 1486 VIVSRMRYIASQVENKIRIVALS 1508 (2158)
Q Consensus 1486 ~~isrl~~i~~~~~~~~riV~lS 1508 (2158)
..|..+.+.++...|+|++.
T Consensus 274 ---~l~~~ll~al~~~~rlIlvG 293 (586)
T TIGR01447 274 ---PLMAKLLKALPPNTKLILLG 293 (586)
T ss_pred ---HHHHHHHHhcCCCCEEEEEC
Confidence 12333334456788998876
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.022 Score=76.00 Aligned_cols=154 Identities=15% Similarity=0.135 Sum_probs=84.7
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHH
Q 000114 1332 YEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2158)
Q Consensus 1332 ~~~l~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~ 1411 (2158)
+..+|..-....++|+.|+...+.+ .-++|.|++|+|||.+. ..++..+.+.......++++.+||.--+....+...
T Consensus 143 l~~lf~~~~~~~d~Qk~Av~~a~~~-~~~vItGgpGTGKTt~v-~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~ 220 (615)
T PRK10875 143 LDALFGPVTDEVDWQKVAAAVALTR-RISVISGGPGTGKTTTV-AKLLAALIQLADGERCRIRLAAPTGKAAARLTESLG 220 (615)
T ss_pred HHHhcCcCCCCCHHHHHHHHHHhcC-CeEEEEeCCCCCHHHHH-HHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHH
Confidence 4445541112358999999888774 45999999999999775 223333322111222378889999988887777665
Q ss_pred HHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhh---h-hccccccceeEEEecccccccCCCCChHHHH
Q 000114 1412 IKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRR---W-KQRKYVQQVSLFIIDELHLIGGQGGPVLEVI 1487 (2158)
Q Consensus 1412 ~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~---~-~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~ 1487 (2158)
...... +. .. ..+ ..-..-..|-.++...... + ....+.-..+++||||+-++.
T Consensus 221 ~~~~~~-~~-----~~----~~~--~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd---------- 278 (615)
T PRK10875 221 KALRQL-PL-----TD----EQK--KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD---------- 278 (615)
T ss_pred hhhhcc-cc-----ch----hhh--hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----------
Confidence 433221 11 00 000 0001112333333221110 0 011123456899999999884
Q ss_pred HHHHHHHHhhcCCCceEEEecc
Q 000114 1488 VSRMRYIASQVENKIRIVALST 1509 (2158)
Q Consensus 1488 isrl~~i~~~~~~~~riV~lSA 1509 (2158)
+..|..+...++...|+|++.-
T Consensus 279 ~~lm~~ll~al~~~~rlIlvGD 300 (615)
T PRK10875 279 LPMMARLIDALPPHARVIFLGD 300 (615)
T ss_pred HHHHHHHHHhcccCCEEEEecc
Confidence 2233334445577899998863
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0052 Score=77.66 Aligned_cols=95 Identities=16% Similarity=0.257 Sum_probs=60.3
Q ss_pred cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcccC
Q 000114 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEK 1438 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~ 1438 (2158)
.++|.|..|||||+++. .++..+.....+. +++|+++..+|.......+.+.... ..
T Consensus 3 v~~I~G~aGTGKTvla~-~l~~~l~~~~~~~--~~~~l~~n~~l~~~l~~~l~~~~~~--------------------~~ 59 (352)
T PF09848_consen 3 VILITGGAGTGKTVLAL-NLAKELQNSEEGK--KVLYLCGNHPLRNKLREQLAKKYNP--------------------KL 59 (352)
T ss_pred EEEEEecCCcCHHHHHH-HHHHHhhccccCC--ceEEEEecchHHHHHHHHHhhhccc--------------------ch
Confidence 47899999999999984 4444442212334 8899999999999888877643300 01
Q ss_pred CcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC
Q 000114 1439 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2158)
Q Consensus 1439 ~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~ 1478 (2158)
....+..|..+..-.. .........++|||||||.+..
T Consensus 60 ~~~~~~~~~~~i~~~~--~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 60 KKSDFRKPTSFINNYS--ESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhhhHHHHhhcc--cccccCCcCCEEEEehhHhhhh
Confidence 1223333333322111 1223467899999999999976
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.05 Score=68.60 Aligned_cols=301 Identities=18% Similarity=0.208 Sum_probs=140.6
Q ss_pred EEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhccc-CCcEEEEEeCCCc-----
Q 000114 516 LCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQM-YDVKVRELSGDQT----- 589 (2158)
Q Consensus 516 v~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~-~gi~v~~l~Gd~~----- 589 (2158)
..+.||||||++..-.||....++- ..-++.|..-..+......|..-... +=..-.+..+|..
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgy----------r~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikk 71 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGY----------RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKK 71 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhch----------hhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeee
Confidence 3578999999998888888876643 24677777777666665555432210 0000011111211
Q ss_pred ---cCHhhhccccEEEcchhHH-HHHHhccCC---CccccccceE-EeecccccccC----------ChhhHHHHHHHHH
Q 000114 590 ---LTRQQIEETQIIVTTPEKW-DIITRKSGD---RTYTQLVKLL-IIDEIHLLHDN----------RGPVLESIVARTV 651 (2158)
Q Consensus 590 ---~~~~~~~~~~IiV~TPekl-d~l~r~~~~---~~~l~~v~lI-IiDEaH~l~d~----------rg~~le~iv~r~~ 651 (2158)
.+. -.....|.++|.+.+ ..++|.... ...+.+.++| +-||+|++... --..+++.+....
T Consensus 72 vn~fse-hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~ 150 (812)
T COG3421 72 VNNFSE-HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLAL 150 (812)
T ss_pred ecccCc-cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHH
Confidence 111 123567999999997 333333211 2334555554 56999999541 1122444333221
Q ss_pred HHHhhccccccEEEEccccCChHHHHHHHhccccCceEEec-CCcccccceeEEEeeccC-Ch-hHHHHHhhHHHHHHHH
Q 000114 652 RQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFD-NSYRPVPLSQQYIGIQVK-KP-LQRFQLMNDLCYEKVV 728 (2158)
Q Consensus 652 ~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~-~~~rpv~l~~~~~~~~~~-~~-~~~~~~l~~~~~~~i~ 728 (2158)
+ ..++--++.+|||+|...+|..-.... .++.+. ..|+.......+..+... .. .+.+.++....|...+
T Consensus 151 ---~-~nkd~~~lef~at~~k~k~v~~ky~dk---iv~~y~lk~f~e~gytk~i~~~s~~~nl~tr~l~alv~s~yr~~l 223 (812)
T COG3421 151 ---E-QNKDNLLLEFSATIPKEKSVEDKYEDK---IVVTYTLKQFSEDGYTKNIYSLSYNKNLETRFLGALVSSLYRELL 223 (812)
T ss_pred ---h-cCCCceeehhhhcCCccccHHHHhccc---eEEeeeHHHhhhhcchhhhhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 2 234445677899998544554433211 111110 111111111111111111 11 1122233333344433
Q ss_pred H-Hh--CCCeEEEEecCh-HHHHHHHHHHHHHh--hcccccccccccCchhHHHHHhhhh-----ccCcchhhhhccCCe
Q 000114 729 A-VA--GKHQVLIFVHSR-KETAKTARAIRDTA--LENDTLGRFLKEDSVSREILQSHTD-----MVKSNDLKDLLPYGF 797 (2158)
Q Consensus 729 ~-~~--~~~~vLVFv~sr-~~~~~~a~~L~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~l~~ll~~gv 797 (2158)
. +. .-+|||.|-+-| .+...-+..+.... .+.+.+..+. ..+..++.+... .-..+.|.-++...+
T Consensus 224 a~~~~i~fkpvilfks~~i~eska~y~~f~~~~enl~~dd~enl~---~~s~~~~n~a~~~f~~k~n~~~~l~~~~~nkf 300 (812)
T COG3421 224 AQHHNIEFKPVILFKSERIEESKANYERFNAFLENLSFDDLENLF---NHSRNAFNKAAKSFFDKQNHTPNLVALLQNKF 300 (812)
T ss_pred HHhcCcccceeEEeecchhhhhHhhHHHHHHHHhhcchhhhHHHH---hhhhHhHHHHHHHhhccccchHHHHHHHhcch
Confidence 2 22 257999997643 44444444443321 1222222211 122223332221 222344555544433
Q ss_pred EE----ecCC-CCHHHHHHHHHHH--hCCCceEEEechhhhhccCCC
Q 000114 798 AI----HHAG-MTRGDRQLVEDLF--GDGHVQVLVSTATLAWGVNLP 837 (2158)
Q Consensus 798 ~~----hHag-l~~~~R~~v~~~F--~~g~i~VLVaT~tla~GVdlP 837 (2158)
.. ..+. -..++-...+..+ ++.-++++.+.+.|-.|.|+-
T Consensus 301 ~~~~~i~n~~ek~~~e~~lllnsled~dnpir~if~vd~lnegwdvl 347 (812)
T COG3421 301 KESVQINNNNEKELEESMLLLNSLEDRDNPIRVIFSVDKLNEGWDVL 347 (812)
T ss_pred hhhheecCCCccchHHHHHHHhhhhhcCCCeEEEEEeecccccchhh
Confidence 22 2221 1122223333333 467899999999999999853
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.033 Score=74.27 Aligned_cols=70 Identities=21% Similarity=0.253 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
++|+.|+..++.+ .-++|+|+.|+|||.+..-.+ ..+...... ....++++.+||---|..+.+......
T Consensus 148 ~~Qk~A~~~al~~-~~~vitGgpGTGKTt~v~~ll-~~l~~~~~~-----~~~~~I~l~APTGkAA~rL~e~~~~~~ 217 (586)
T TIGR01447 148 NWQKVAVALALKS-NFSLITGGPGTGKTTTVARLL-LALVKQSPK-----QGKLRIALAAPTGKAAARLAESLRKAV 217 (586)
T ss_pred HHHHHHHHHHhhC-CeEEEEcCCCCCHHHHHHHHH-HHHHHhccc-----cCCCcEEEECCcHHHHHHHHHHHHhhh
Confidence 7999999998886 558999999999998653222 222221100 012479999999888887777665543
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.05 Score=65.09 Aligned_cols=161 Identities=20% Similarity=0.214 Sum_probs=97.6
Q ss_pred CCCHHHHHHHHHHhc---------CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHH
Q 000114 1341 HFNPIQTQVFTVLYN---------TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~---------~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~ 1411 (2158)
.+...|-+++--..+ .+.-.++.--||.||.-...-.|+..+.+. .. |+|+++.+..|-.+..++|+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G--r~--r~vwvS~s~dL~~Da~RDl~ 112 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG--RK--RAVWVSVSNDLKYDAERDLR 112 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC--CC--ceEEEECChhhhhHHHHHHH
Confidence 566777666544322 134588999999999977766777777772 22 79999999999999999999
Q ss_pred HHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhh---hccc-----cc--cceeEEEecccccccCCCC
Q 000114 1412 IKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRW---KQRK-----YV--QQVSLFIIDELHLIGGQGG 1481 (2158)
Q Consensus 1412 ~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~---~~~~-----~l--~~v~llIiDEaH~l~~~~g 1481 (2158)
.++.. .+.+..+..-...+...+ +..|+++|...+..-.+.. ..+. ++ ..=.+||+||||...+..+
T Consensus 113 -DIG~~-~i~v~~l~~~~~~~~~~~-~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~ 189 (303)
T PF13872_consen 113 -DIGAD-NIPVHPLNKFKYGDIIRL-KEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSS 189 (303)
T ss_pred -HhCCC-cccceechhhccCcCCCC-CCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCc
Confidence 45432 333333322100011111 3369999988876654310 1110 11 1235899999998865322
Q ss_pred -----ChHHHHHHHHHHHHhhcCCCceEEEeccCCC
Q 000114 1482 -----PVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2158)
Q Consensus 1482 -----~~~e~~isrl~~i~~~~~~~~riV~lSATl~ 1512 (2158)
......+..+ ..++ ++.|+|-+|||-.
T Consensus 190 ~~~~~sk~g~avl~L---Q~~L-P~ARvvY~SATga 221 (303)
T PF13872_consen 190 GSKKPSKTGIAVLEL---QNRL-PNARVVYASATGA 221 (303)
T ss_pred cCccccHHHHHHHHH---HHhC-CCCcEEEeccccc
Confidence 1222233333 2333 4788999999964
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0098 Score=75.16 Aligned_cols=95 Identities=19% Similarity=0.255 Sum_probs=59.5
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCH
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~ 592 (2158)
.++|.|..|||||++++-.+....... .+.+++|+++..+|+..+...+......
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~---------~~~~~~~l~~n~~l~~~l~~~l~~~~~~---------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSE---------EGKKVLYLCGNHPLRNKLREQLAKKYNP---------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccc---------cCCceEEEEecchHHHHHHHHHhhhccc----------------
Confidence 478999999999998865544431111 2347999999999999888888764300
Q ss_pred hhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc
Q 000114 593 QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2158)
Q Consensus 593 ~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d 637 (2158)
......+..|..+ +.............++|||||||++.+
T Consensus 58 ---~~~~~~~~~~~~~--i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 ---KLKKSDFRKPTSF--INNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred ---chhhhhhhhhHHH--HhhcccccccCCcCCEEEEehhHhhhh
Confidence 0112223333332 111001113446689999999999976
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.044 Score=73.25 Aligned_cols=144 Identities=19% Similarity=0.197 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcc
Q 000114 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575 (2158)
Q Consensus 496 l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~ 575 (2158)
..++|+.|+..++.+ .-++|.|+.|+|||.+..-. +..+..... ....++++.+||---|..+.+.......
T Consensus 153 ~~d~Qk~Av~~a~~~-~~~vItGgpGTGKTt~v~~l-l~~l~~~~~------~~~~~i~l~APTgkAA~rL~e~~~~~~~ 224 (615)
T PRK10875 153 EVDWQKVAAAVALTR-RISVISGGPGTGKTTTVAKL-LAALIQLAD------GERCRIRLAAPTGKAAARLTESLGKALR 224 (615)
T ss_pred CCHHHHHHHHHHhcC-CeEEEEeCCCCCHHHHHHHH-HHHHHHhcC------CCCcEEEEECCcHHHHHHHHHHHHhhhh
Confidence 458999999988875 45899999999999764322 222222100 0234788999999888888877765443
Q ss_pred cCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccC----CCccccccceEEeecccccccCChhhHHHHHHHHH
Q 000114 576 MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSG----DRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTV 651 (2158)
Q Consensus 576 ~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~----~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~ 651 (2158)
.+++. .........-..|-.++-....... .....-..++|||||+-++. -+ ++.+++
T Consensus 225 ~~~~~-----------~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd---~~----lm~~ll 286 (615)
T PRK10875 225 QLPLT-----------DEQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD---LP----MMARLI 286 (615)
T ss_pred ccccc-----------hhhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc---HH----HHHHHH
Confidence 32210 1100111112334444311110000 01122346899999999873 11 222232
Q ss_pred HHHhhccccccEEEEcc
Q 000114 652 RQIETTKEHIRLVGLSA 668 (2158)
Q Consensus 652 ~~~~~~~~~~riv~lSA 668 (2158)
...++..|+|++-=
T Consensus 287 ---~al~~~~rlIlvGD 300 (615)
T PRK10875 287 ---DALPPHARVIFLGD 300 (615)
T ss_pred ---HhcccCCEEEEecc
Confidence 23466788888753
|
|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0083 Score=74.53 Aligned_cols=124 Identities=22% Similarity=0.210 Sum_probs=76.4
Q ss_pred CCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcc
Q 000114 496 LNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575 (2158)
Q Consensus 496 l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~ 575 (2158)
||+-|.+++.. ...+++|.|+.|||||.+.+.-++..+..+.. +.-+++++++|++.+.++..++...+.
T Consensus 1 l~~eQ~~~i~~---~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~-------~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS---TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGV-------PPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSS-------TGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC---CCCCEEEEeCCCCCchHHHHHHHHHhhccccC-------ChHHheecccCHHHHHHHHHHHHHhcC
Confidence 58899999886 45679999999999999988888777766521 334799999999999999999998765
Q ss_pred cCCcEEEEEeCCCccCHhhhccccEEEcchhHH-HHHHhccCCCccccccceEEeeccc
Q 000114 576 MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (2158)
Q Consensus 576 ~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH 633 (2158)
..+... ..+............+.|+|-..+ ..+.+....... -.-.+-|+|+..
T Consensus 71 ~~~~~~---~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~-~~~~~~i~~~~~ 125 (315)
T PF00580_consen 71 EEQQES---SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIG-IDPNFEILDEEE 125 (315)
T ss_dssp HCCHCC---TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTT-SHTTTEEECHHH
T ss_pred cccccc---cccccccccccccchheeehhhhhhhhhhhhhhhhhh-ccccceeecchh
Confidence 321000 000001111122456788888776 333333211111 112456666665
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.028 Score=67.44 Aligned_cols=64 Identities=22% Similarity=0.283 Sum_probs=48.7
Q ss_pred CCCCCCHHHHHHHHHHhcCC-CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHH
Q 000114 1338 GFKHFNPIQTQVFTVLYNTD-DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~-~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa 1403 (2158)
|+.--|-.|+-|+..++..+ +=|.+.++.|||||+.|+.|.+........-. ++|+.=|+..+-
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~--KiiVtRp~vpvG 289 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYR--KIIVTRPTVPVG 289 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhc--eEEEecCCcCcc
Confidence 47778889999999998744 34678899999999999888887766533334 778877775543
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.035 Score=76.24 Aligned_cols=62 Identities=24% Similarity=0.303 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
..+++-|.+|+..+.. +..++|.++.|+|||.+. -+++..+... ++..+++.++||-.-+..
T Consensus 322 ~~l~~~Q~~Ai~~~~~-~~~~iitGgpGTGKTt~l-~~i~~~~~~~--~~~~~v~l~ApTg~AA~~ 383 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQ-HKVVILTGGPGTGKTTIT-RAIIELAEEL--GGLLPVGLAAPTGRAAKR 383 (720)
T ss_pred CCCCHHHHHHHHHHHh-CCeEEEECCCCCCHHHHH-HHHHHHHHHc--CCCceEEEEeCchHHHHH
Confidence 4699999999999976 456999999999999766 4555555542 211278889999877753
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.056 Score=75.36 Aligned_cols=61 Identities=13% Similarity=0.119 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~ 566 (2158)
.|++-|.+++..++.+++.++|.++.|+|||.+ +-++...+.. .+.+++.++||---+..+
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~----------~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA----------AGYEVRGAALSGIAAENL 406 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH----------cCCeEEEecCcHHHHHHH
Confidence 699999999999998777789999999999986 3344444433 245799999997655443
|
|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.023 Score=74.51 Aligned_cols=196 Identities=17% Similarity=0.236 Sum_probs=101.4
Q ss_pred CCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHhh
Q 000114 819 GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLM 898 (2158)
Q Consensus 819 g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll 898 (2158)
...+.|++-.+|-.|.|=|+|=.|.+ ..+.+ |...=+|-+||+-|---+..|.-+.= .-+...++.++
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIck----L~~S~------SeiSK~QeVGRGLRLaVNe~G~RV~~--~~~~~n~L~vl 549 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICK----LRSSG------SEISKLQEVGRGLRLAVNENGERVTK--DFDFPNELTVL 549 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEE----ecCCC------cchHHHHHhccceeeeeccccceecc--cccccceEEEE
Confidence 56899999999999999999999887 44443 67788999999999665555554431 11111111111
Q ss_pred cCCCcccchhhHhhHHHHHHHHHhcc--ccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHHH
Q 000114 899 NQQLPIESQFVSKLADQLNAEIVLGT--VQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAA 976 (2158)
Q Consensus 899 ~~~~pieS~l~~~l~d~lnaeI~~~~--i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~ 976 (2158)
-.. -|-.|...|..-++.+-..+- .....++... ..+ .++.+.++ .+...-.
T Consensus 550 v~~--sek~Fv~~LqkEI~~~s~i~~~~~~~~e~~~~~----------i~~-e~~~v~~e-------------~~~~~~f 603 (985)
T COG3587 550 VNE--SEKDFVKALQKEINDESFIKQGFAKDEEELSKL----------ILK-ERGKVLPE-------------TLEKLLF 603 (985)
T ss_pred ecc--cHHHHHHHHHHHHHHhhhhccchhhHHHHHHHH----------Hhh-ccccccHH-------------HHHHHHh
Confidence 111 144555566665655433222 2222222221 111 11122221 0011112
Q ss_pred HHHhHCCCccccccCCc-cccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCC--CCcCChhHHHHHH
Q 000114 977 TILDRNNLVKYDRKSGY-FQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFK--YVTVRQDEKMELA 1053 (2158)
Q Consensus 977 ~~L~~~~~i~~~~~~~~-~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~--~i~~r~~e~~~l~ 1053 (2158)
..|.+...+..++ +.. =.-+.++..-+.+|-.+..+.-+.+. .+. .-..+..+.+=+ .|.+|.+-.+|++
T Consensus 604 ~dl~~~d~l~~n~-n~f~~~~~~~d~lk~e~~~~f~~~~~~~~~---~l~---~~~~I~Na~~~k~~~i~~r~~n~kefk 676 (985)
T COG3587 604 GDLIKDDYLDLNE-NEFAEKEPELDKLKDELYEAFEKIKDLIKD---RLI---GADRIRNAKERKKEKIKIRKENFKEFK 676 (985)
T ss_pred hhhcccccccccc-hhhccccchhhhcCHHHHHHhHHHHHHHHh---hhh---hhhhhccCCcccccceehhhhhHHHHH
Confidence 2333333222211 111 12245777777777776666555442 111 112445566654 4667777788888
Q ss_pred HHhhcC
Q 000114 1054 KLLDRV 1059 (2158)
Q Consensus 1054 ~l~~~~ 1059 (2158)
.|.+.+
T Consensus 677 ~LW~~i 682 (985)
T COG3587 677 ALWEKI 682 (985)
T ss_pred HHHHHh
Confidence 887753
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.058 Score=64.58 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=19.1
Q ss_pred hcCCCcEEEEccCCchhHHHHHH
Q 000114 1354 YNTDDNVLVAAPTGSGKTICSEF 1376 (2158)
Q Consensus 1354 ~~~~~nvli~ApTGSGKTl~a~l 1376 (2158)
...+.|++++||+|+|||..+.-
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHH
Confidence 45678999999999999988743
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.06 Score=74.20 Aligned_cols=62 Identities=15% Similarity=0.210 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~ 566 (2158)
..|++-|.+|+..++.++..++|.++.|+|||.+.- ++...+.. .+.++++++||--.+..+
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~----------~g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWEA----------AGYRVIGAALSGKAAEGL 412 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHHh----------CCCeEEEEeCcHHHHHHH
Confidence 368999999999998876778999999999997643 33333332 235799999997665544
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.044 Score=63.29 Aligned_cols=145 Identities=21% Similarity=0.284 Sum_probs=92.4
Q ss_pred CCChhhHhhcCCCCCCCHHHHHHHHHHHcC--CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAFKGMTQLNRVQSRVYKSALSS--ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f~g~~~l~~iQ~~~i~~~l~~--~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
+-|+|+.=-+.+---+++.|.++....... +.|.+...-.|.|||.|. +|++..+.... ..-+.+++|
T Consensus 9 ~~P~wLl~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg---------~~LvrviVp 78 (229)
T PF12340_consen 9 EYPDWLLFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALADG---------SRLVRVIVP 78 (229)
T ss_pred hChHHHHHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcCC---------CcEEEEEcC
Confidence 457776644433347899999999988863 468999999999999875 57766655431 124555666
Q ss_pred cHHHHHHHHHHHHhhcccC-CcEE--EEEeCCCccCHhh-----------hccccEEEcchhHHHHHHhccC--------
Q 000114 559 MKALVAEVVGNLSNRLQMY-DVKV--RELSGDQTLTRQQ-----------IEETQIIVTTPEKWDIITRKSG-------- 616 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~-gi~v--~~l~Gd~~~~~~~-----------~~~~~IiV~TPekld~l~r~~~-------- 616 (2158)
++|..|..+.+..+++.. +-+| .-+.-+...+... ....-|+++|||.+.++.-+..
T Consensus 79 -k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~ 157 (229)
T PF12340_consen 79 -KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKP 157 (229)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCH
Confidence 689999999999888642 2233 2333444443321 2355699999998633321110
Q ss_pred --------CCccccccceEEeecccccc
Q 000114 617 --------DRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 617 --------~~~~l~~v~lIIiDEaH~l~ 636 (2158)
-..++.....=|+||+|.+.
T Consensus 158 ~~~~~l~~~q~~l~~~~rdilDEsDe~L 185 (229)
T PF12340_consen 158 EEARELLKIQKWLDEHSRDILDESDEIL 185 (229)
T ss_pred HHHHHHHHHHHHHHhcCCeEeECchhcc
Confidence 01233444556888888653
|
There are two conserved sequence motifs: LLE and NMG. |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.12 Score=65.47 Aligned_cols=131 Identities=15% Similarity=0.162 Sum_probs=75.0
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhh-cCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhc
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~-~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~ 1435 (2158)
...++++||||+|||.++.--+.+..... ..+..+..+.+=+.|.-+.++...|.+. +|+.+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~----lgvpv~~----------- 238 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDI----MGIPVKA----------- 238 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhc----CCcceEe-----------
Confidence 34689999999999987643332222111 1233334455566777777766665533 3444321
Q ss_pred ccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCC-ceEEEeccCCCCh
Q 000114 1436 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENK-IRIVALSTSLANA 1514 (2158)
Q Consensus 1436 l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~-~riV~lSATl~n~ 1514 (2158)
+.++..+...+.+ +++.++||||++.+... ... -+.++..+......+ -.++.+|||.. .
T Consensus 239 -------~~~~~~l~~~L~~------~~~~DlVLIDTaGr~~~----~~~-~l~el~~~l~~~~~~~e~~LVlsat~~-~ 299 (388)
T PRK12723 239 -------IESFKDLKEEITQ------SKDFDLVLVDTIGKSPK----DFM-KLAEMKELLNACGRDAEFHLAVSSTTK-T 299 (388)
T ss_pred -------eCcHHHHHHHHHH------hCCCCEEEEcCCCCCcc----CHH-HHHHHHHHHHhcCCCCeEEEEEcCCCC-H
Confidence 2234444433333 35789999999997642 111 355666665544433 47789999975 5
Q ss_pred HHHHHHh
Q 000114 1515 KDLGEWI 1521 (2158)
Q Consensus 1515 ~dl~~wl 1521 (2158)
.++.+.+
T Consensus 300 ~~~~~~~ 306 (388)
T PRK12723 300 SDVKEIF 306 (388)
T ss_pred HHHHHHH
Confidence 5555444
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.063 Score=74.05 Aligned_cols=61 Identities=16% Similarity=0.095 Sum_probs=46.6
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
..|++-|.+|+..++.++.-++|.++.|+|||.+. -++...+.. .+. ++++++||---+..
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~--~g~--~V~~~ApTg~Aa~~ 411 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEA--AGY--RVIGAALSGKAAEG 411 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHh--CCC--eEEEEeCcHHHHHH
Confidence 36899999999999887677899999999999765 344444444 233 89999999765544
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.084 Score=63.61 Aligned_cols=64 Identities=25% Similarity=0.269 Sum_probs=49.6
Q ss_pred CCCCCCHHHHHHHHHHHcCC-CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSA-DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~-~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa 563 (2158)
|+...|..|.-|+...+..+ +-|.+.++-|+|||+.|+.+.+......+ ...|+|+.=|+..+-
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~--------~y~KiiVtRp~vpvG 289 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK--------RYRKIIVTRPTVPVG 289 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh--------hhceEEEecCCcCcc
Confidence 78888999999999877654 33678899999999999998887766543 223788888887653
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.04 Score=59.47 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=24.1
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEccc
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~ 1399 (2158)
..++++.||+|+|||..+.. +.+.+.. ... .++++...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~-i~~~~~~--~~~--~v~~~~~~ 56 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARA-IANELFR--PGA--PFLYLNAS 56 (151)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHhhc--CCC--CeEEEehh
Confidence 56799999999999976633 3333322 122 55665544
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.043 Score=72.42 Aligned_cols=79 Identities=25% Similarity=0.238 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHc---CCCcEEEEccCCCchHHHHHHHHHHHHHhcc---C-------C-----------CCCC----
Q 000114 495 QLNRVQSRVYKSALS---SADNILLCAPTGAGKTNVAVLTILQQLALNR---N-------D-----------DGSF---- 546 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~---~~~nvlv~APTGsGKT~~a~l~il~~l~~~~---~-------~-----------~~~~---- 546 (2158)
+|++.|...+..++. ...|.++-.|||+|||++.+-..|.-..... . . +|..
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 678999888776654 4557899999999999876554443222111 0 0 0000
Q ss_pred ------CCCCcEEEEEcccHHHHHHHHHHHHhh
Q 000114 547 ------NHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2158)
Q Consensus 547 ------~~~~~kil~iaP~kaLa~q~~~~~~~~ 573 (2158)
...-+++.|-.-|-+-..|+++++++.
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT 133 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRT 133 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhc
Confidence 013678999999998889999998874
|
|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.018 Score=71.49 Aligned_cols=71 Identities=21% Similarity=0.134 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000114 1342 FNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2158)
Q Consensus 1342 ~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~ 1416 (2158)
+|+-|.+++.. ...+++|.|+.|||||.+...-+...+.... ...-+++++++|++.+.++..++...++.
T Consensus 1 l~~eQ~~~i~~---~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 1 LTDEQRRIIRS---TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-VPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-STGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC---CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-CChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 57889999987 3667999999999999988777776666531 12228999999999999999999876653
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.07 Score=64.25 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHH---HhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHH
Q 000114 1340 KHFNPIQTQVFTV---LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~---l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~ 1406 (2158)
..+++.|..++.. +...+.|++++||+|+|||..+. ++...+.. .+. +++|+ +..+|+.+.
T Consensus 86 ~~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~-Aia~~a~~--~g~--~v~f~-~~~~L~~~l 149 (269)
T PRK08181 86 PMVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAA-AIGLALIE--NGW--RVLFT-RTTDLVQKL 149 (269)
T ss_pred CCCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHH-HHHHHHHH--cCC--ceeee-eHHHHHHHH
Confidence 3456777777643 34567899999999999997763 44444433 122 45554 455565554
|
|
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.023 Score=72.25 Aligned_cols=67 Identities=27% Similarity=0.399 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
+.+++-|.+|+..+.+..+-.++.||.|+|||.+....|.+.+.++ .+||+.+|+..-+.-+.+++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~-----------k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQK-----------KRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcC-----------CeEEEEcCchHHHHHHHHHhc
Confidence 4789999999999998877789999999999999888888887764 389999999999998888654
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.024 Score=60.60 Aligned_cols=26 Identities=27% Similarity=0.373 Sum_probs=16.5
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHH
Q 000114 510 SADNILLCAPTGAGKTNVAVLTILQQ 535 (2158)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~~ 535 (2158)
++..++|+||+|+|||.++...+-..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 34568999999999998776554443
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.092 Score=73.31 Aligned_cols=125 Identities=18% Similarity=0.197 Sum_probs=77.0
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g 1419 (2158)
..|++-|.+++..++.+++.++|.++.|+|||.+. -++...+.. .+. +++.++||---+.... ...|
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l-~~~~~~~e~--~G~--~V~~~ApTGkAA~~L~--------e~tG 411 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAWEA--AGY--EVRGAALSGIAAENLE--------GGSG 411 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH-HHHHHHHHH--cCC--eEEEecCcHHHHHHHh--------hccC
Confidence 36999999999999987777899999999999763 344445544 233 8999999976553322 1112
Q ss_pred cEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhh-ccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhc
Q 000114 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWK-QRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (2158)
Q Consensus 1420 ~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~-~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~ 1498 (2158)
+.. .|-.+| +..|. ....+...++|||||+-+++.. .+..++. .. .
T Consensus 412 i~a---------------------~TI~sl---l~~~~~~~~~l~~~~vlIVDEASMv~~~---~m~~LL~----~a--~ 458 (988)
T PRK13889 412 IAS---------------------RTIASL---EHGWGQGRDLLTSRDVLVIDEAGMVGTR---QLERVLS----HA--A 458 (988)
T ss_pred cch---------------------hhHHHH---HhhhcccccccccCcEEEEECcccCCHH---HHHHHHH----hh--h
Confidence 211 122222 22232 2334667789999999998632 1222221 11 1
Q ss_pred CCCceEEEeccC
Q 000114 1499 ENKIRIVALSTS 1510 (2158)
Q Consensus 1499 ~~~~riV~lSAT 1510 (2158)
....++|++.=+
T Consensus 459 ~~garvVLVGD~ 470 (988)
T PRK13889 459 DAGAKVVLVGDP 470 (988)
T ss_pred hCCCEEEEECCH
Confidence 346788887643
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.044 Score=59.39 Aligned_cols=89 Identities=15% Similarity=0.192 Sum_probs=62.1
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcCC-ceEEEecCccccccCCCc---cEEEEecceeecCCC----------------Cc
Q 000114 1635 GVGYLHEGLNKTDQEVVSALFEAGK-IKVCVMSSSMCWGVPLTA---HLVVVMGTQYYDGQE----------------NA 1694 (2158)
Q Consensus 1635 gv~~~H~~l~~~dR~~v~~~F~~g~-i~VLVaT~~la~Gvdlp~---~~vVI~gt~~yd~~~----------------~~ 1694 (2158)
+..++..+....+...+++.|+... ..||++|..+..|||+|. ..|||.|.++-.+.. +.
T Consensus 23 ~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~ 102 (141)
T smart00492 23 NLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRP 102 (141)
T ss_pred CCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCc
Confidence 4456666777767888999998654 379999988999999995 467777776643321 00
Q ss_pred Cc----CCCHHHHHHhhccCCCCCCCCceEEEEE
Q 000114 1695 HT----DYPVTDLLQMMGHASRPLLDNSGKCVIL 1724 (2158)
Q Consensus 1695 ~~----~~s~~~~lQr~GRaGR~g~d~~G~~iil 1724 (2158)
+. +.....+.|.+||+-|.. +..|.++++
T Consensus 103 ~~~~~~~~a~~~l~Qa~GR~iR~~-~D~g~i~l~ 135 (141)
T smart00492 103 FDFVSLPDAMRTLAQCVGRLIRGA-NDYGVVVIA 135 (141)
T ss_pred hhHHHHHHHHHHHHHHhCccccCc-CceEEEEEE
Confidence 11 222567889999999976 456755554
|
|
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.02 Score=72.70 Aligned_cols=67 Identities=21% Similarity=0.258 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHH
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~ 1411 (2158)
+.+++-|++|+....+..+-.+|.||+|+|||.....-|.+.+.+ +. ++++.+|+.+-++-+.+++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---~k--~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---KK--RVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---CC--eEEEEcCchHHHHHHHHHhc
Confidence 579999999999999877778999999999998887777777766 45 99999999999998888643
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.077 Score=63.11 Aligned_cols=46 Identities=20% Similarity=0.241 Sum_probs=30.5
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~ 1408 (2158)
..++++.||+|+|||..+ .++.+.+.. .+ ..++..+..+|..++..
T Consensus 101 ~~~l~l~G~~GtGKThLa-~AIa~~l~~---~g--~~v~~i~~~~l~~~l~~ 146 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLA-AAIGNRLLA---KG--RSVIVVTVPDVMSRLHE 146 (248)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHH---cC--CCeEEEEHHHHHHHHHH
Confidence 467999999999999877 555556554 22 23344455666665544
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.094 Score=62.38 Aligned_cols=48 Identities=15% Similarity=0.324 Sum_probs=30.0
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
..+++++||+|+|||-.+. +|.+.+... +..++| .+..+|..++...+
T Consensus 101 ~~~l~l~G~~GtGKThLa~-AIa~~l~~~----------g~~v~~-i~~~~l~~~l~~~~ 148 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAA-AIGNRLLAK----------GRSVIV-VTVPDVMSRLHESY 148 (248)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHc----------CCCeEE-EEHHHHHHHHHHHH
Confidence 4579999999999997764 344444332 123444 45566776665443
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.17 Score=59.50 Aligned_cols=124 Identities=18% Similarity=0.249 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHhcCCC----cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1342 FNPIQTQVFTVLYNTDD----NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1342 ~~~iQ~q~~~~l~~~~~----nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
.|..=..+...+.++.+ .++|.||+|+|||-. +.++.+.+.+..++. +++|+... +........++.
T Consensus 15 ~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~--~v~y~~~~-~f~~~~~~~~~~----- 85 (219)
T PF00308_consen 15 SNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHL-LQAIANEAQKQHPGK--RVVYLSAE-EFIREFADALRD----- 85 (219)
T ss_dssp TTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHH-HHHHHHHHHHHCTTS---EEEEEHH-HHHHHHHHHHHT-----
T ss_pred cHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHH-HHHHHHHHHhccccc--cceeecHH-HHHHHHHHHHHc-----
Confidence 34444455555554333 489999999999985 366666666533444 78887643 444433332220
Q ss_pred CCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhh
Q 000114 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQ 1497 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~ 1497 (2158)
...+ .+.. .+...++++||++|.+.+.. ..-+.+...+..+..
T Consensus 86 --------------------------~~~~---~~~~------~~~~~DlL~iDDi~~l~~~~-~~q~~lf~l~n~~~~- 128 (219)
T PF00308_consen 86 --------------------------GEIE---EFKD------RLRSADLLIIDDIQFLAGKQ-RTQEELFHLFNRLIE- 128 (219)
T ss_dssp --------------------------TSHH---HHHH------HHCTSSEEEEETGGGGTTHH-HHHHHHHHHHHHHHH-
T ss_pred --------------------------ccch---hhhh------hhhcCCEEEEecchhhcCch-HHHHHHHHHHHHHHh-
Confidence 0111 1212 24578999999999987532 123445555554443
Q ss_pred cCCCceEEEeccCCCC
Q 000114 1498 VENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1498 ~~~~~riV~lSATl~n 1513 (2158)
.+.++|+.|...|.
T Consensus 129 --~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 129 --SGKQLILTSDRPPS 142 (219)
T ss_dssp --TTSEEEEEESS-TT
T ss_pred --hCCeEEEEeCCCCc
Confidence 35677777766554
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.049 Score=58.76 Aligned_cols=21 Identities=43% Similarity=0.691 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCchHHHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAVLT 531 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~ 531 (2158)
...+++.||+|+|||..+...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i 39 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAI 39 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 557999999999999755433
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.093 Score=72.13 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~ 567 (2158)
..+++-|.+|+..+..+ ..+++.++.|+|||.+. -.++..+.... ....++.++||-.-|..+.
T Consensus 322 ~~l~~~Q~~Ai~~~~~~-~~~iitGgpGTGKTt~l-~~i~~~~~~~~--------~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQH-KVVILTGGPGTGKTTIT-RAIIELAEELG--------GLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred CCCCHHHHHHHHHHHhC-CeEEEECCCCCCHHHHH-HHHHHHHHHcC--------CCceEEEEeCchHHHHHHH
Confidence 36899999999998654 46999999999999765 34444443321 1146888999987776443
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.068 Score=67.79 Aligned_cols=124 Identities=26% Similarity=0.377 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHHh-----cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHH--HHHHHHH
Q 000114 1341 HFNPIQTQVFTVLY-----NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER--YRDWEIK 1413 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~-----~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~--~~~~~~~ 1413 (2158)
.+|+-|.+++..++ ..+.+++|.||-|+|||.+. -++...+.. .+. .+++++||-.-|..+ -..+.+.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~-~~i~~~~~~--~~~--~~~~~a~tg~AA~~i~~G~T~hs~ 75 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLI-KAIIDYLRS--RGK--KVLVTAPTGIAAFNIPGGRTIHSF 75 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHH-HHHHHHhcc--ccc--eEEEecchHHHHHhccCCcchHHh
Confidence 47899999988873 24568999999999999665 233333322 233 788999997766554 2333333
Q ss_pred hcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHH
Q 000114 1414 FGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493 (2158)
Q Consensus 1414 f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~ 1493 (2158)
|+ +.+.. . ..... .+.+ .......++.++++|+||+=++. ...++.+-.+++.
T Consensus 76 f~----i~~~~----~-------~~~~~---~~~~------~~~~~~~l~~~~~lIiDEism~~---~~~l~~i~~~lr~ 128 (364)
T PF05970_consen 76 FG----IPINN----N-------EKSQC---KISK------NSRLRERLRKADVLIIDEISMVS---ADMLDAIDRRLRD 128 (364)
T ss_pred cC----ccccc----c-------ccccc---cccc------cchhhhhhhhheeeecccccchh---HHHHHHHHHhhhh
Confidence 32 11100 0 00001 1111 11123357889999999999885 3345556566666
Q ss_pred HHh
Q 000114 1494 IAS 1496 (2158)
Q Consensus 1494 i~~ 1496 (2158)
+..
T Consensus 129 i~~ 131 (364)
T PF05970_consen 129 IRK 131 (364)
T ss_pred hhc
Confidence 654
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.048 Score=69.18 Aligned_cols=109 Identities=23% Similarity=0.349 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHH-----cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH--H
Q 000114 495 QLNRVQSRVYKSAL-----SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV--V 567 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l-----~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~--~ 567 (2158)
+||+-|++++..++ ....+++|.||-|+|||.+.- ++...+.. .+..++++|||-.-|.-+ .
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~~----------~~~~~~~~a~tg~AA~~i~~G 69 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLRS----------RGKKVLVTAPTGIAAFNIPGG 69 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhcc----------ccceEEEecchHHHHHhccCC
Confidence 47999999998873 234579999999999997642 22222222 234799999997766655 2
Q ss_pred HHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc
Q 000114 568 GNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2158)
Q Consensus 568 ~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d 637 (2158)
..+...|+ +.+..- . .... .+.+ .......+..+++|||||+=+++.
T Consensus 70 ~T~hs~f~---i~~~~~----~-------~~~~---~~~~------~~~~~~~l~~~~~lIiDEism~~~ 116 (364)
T PF05970_consen 70 RTIHSFFG---IPINNN----E-------KSQC---KISK------NSRLRERLRKADVLIIDEISMVSA 116 (364)
T ss_pred cchHHhcC---cccccc----c-------cccc---cccc------cchhhhhhhhheeeecccccchhH
Confidence 33444332 222110 0 0000 1221 111224567789999999998753
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.091 Score=69.55 Aligned_cols=74 Identities=22% Similarity=0.342 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHhc---CCCcEEEEccCCchhHHHHH---HHHHHHHHhh---------c-------------------
Q 000114 1341 HFNPIQTQVFTVLYN---TDDNVLVAAPTGSGKTICSE---FAILRNHQKA---------S------------------- 1386 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~---~~~nvli~ApTGSGKTl~a~---l~il~~l~~~---------~------------------- 1386 (2158)
+++|.|..-+..++. ...|.++-+|||+|||++.+ ||-.+++... .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 578888777666543 45679999999999997653 4444444410 0
Q ss_pred --C----CCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1387 --E----TGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1387 --~----~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
+ .+-|++.|-.-|.+-..|+.++++ +++
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElr-rT~ 134 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELR-RTG 134 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHh-hcC
Confidence 0 012688888889999999999988 444
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.23 Score=66.57 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=25.2
Q ss_pred cE-EEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 513 NI-LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 513 nv-lv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
++ +|+||||+|||.+.-..+ +.+...... .....+.++||=-
T Consensus 782 nvLYIyG~PGTGKTATVK~VL-rELqeeaeq---k~lp~f~vVYINC 824 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSVI-QLLQHKTKQ---KLLPSFNVFEING 824 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHHH-HHHHHHHhh---ccCCCceEEEEeC
Confidence 45 599999999998876543 444321110 0123467888843
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.16 Score=60.92 Aligned_cols=29 Identities=24% Similarity=0.504 Sum_probs=21.5
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHH
Q 000114 508 LSSADNILLCAPTGAGKTNVAVLTILQQL 536 (2158)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l 536 (2158)
+....|++++||+|+|||..+.-......
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 34567899999999999987754444333
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.36 Score=57.33 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHhc-------CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1341 HFNPIQTQVFTVLYN-------TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~-------~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
..++.|.+++..+.. +..++++.+|+|+|||..+ .++...+.. .+. .++|+ +..+|..
T Consensus 76 ~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa-~aia~~l~~--~g~--~v~~i-t~~~l~~ 140 (244)
T PRK07952 76 VECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLA-AAICNELLL--RGK--SVLII-TVADIMS 140 (244)
T ss_pred CCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHH-HHHHHHHHh--cCC--eEEEE-EHHHHHH
Confidence 334556656554321 1246999999999999877 455656655 122 55555 4444443
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.15 Score=61.55 Aligned_cols=60 Identities=22% Similarity=0.408 Sum_probs=35.7
Q ss_pred CCHHHHHHHHH---HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000114 496 LNRVQSRVYKS---ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2158)
Q Consensus 496 l~~iQ~~~i~~---~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~ 567 (2158)
+++.|..++.. ......|++++||+|+|||-.+.....+.+.. +.+++|+ +...|+.++.
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~-----------g~~v~f~-~~~~L~~~l~ 150 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIEN-----------GWRVLFT-RTTDLVQKLQ 150 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHc-----------CCceeee-eHHHHHHHHH
Confidence 34555555532 34567789999999999997665333333322 2245555 4555666553
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.39 Score=60.85 Aligned_cols=132 Identities=14% Similarity=0.168 Sum_probs=73.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccC
Q 000114 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~ 591 (2158)
..++++||||+|||.++.-.+.+........ | ....++.+=+.|.-+.++...+.+. +|+.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~-g----~~V~lit~Dt~R~aa~eQL~~~a~~---lgvpv~~-------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDK-S----LNIKIITIDNYRIGAKKQIQTYGDI---MGIPVKA-------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccC-C----CeEEEEeccCccHHHHHHHHHHhhc---CCcceEe--------
Confidence 4689999999999987754433322221000 1 2233445556677777776666554 3444321
Q ss_pred HhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhcccc-ccEEEEcccc
Q 000114 592 RQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEH-IRLVGLSATL 670 (2158)
Q Consensus 592 ~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~-~riv~lSATl 670 (2158)
+-+++.+...... +.+.++||||++.+.+.. ... +.++...+.....+ -.++.+|||.
T Consensus 239 ----------~~~~~~l~~~L~~------~~~~DlVLIDTaGr~~~~----~~~-l~el~~~l~~~~~~~e~~LVlsat~ 297 (388)
T PRK12723 239 ----------IESFKDLKEEITQ------SKDFDLVLVDTIGKSPKD----FMK-LAEMKELLNACGRDAEFHLAVSSTT 297 (388)
T ss_pred ----------eCcHHHHHHHHHH------hCCCCEEEEcCCCCCccC----HHH-HHHHHHHHHhcCCCCeEEEEEcCCC
Confidence 1234433222222 245799999999987532 111 33444443433333 4678899996
Q ss_pred CChHHHHHHHh
Q 000114 671 PNYEDVALFLR 681 (2158)
Q Consensus 671 pn~~dv~~~l~ 681 (2158)
. ..++...+.
T Consensus 298 ~-~~~~~~~~~ 307 (388)
T PRK12723 298 K-TSDVKEIFH 307 (388)
T ss_pred C-HHHHHHHHH
Confidence 4 566665554
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.28 Score=56.43 Aligned_cols=129 Identities=19% Similarity=0.206 Sum_probs=69.9
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHh
Q 000114 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ 593 (2158)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~ 593 (2158)
+++++|||+|||....-.+.+...++ .+.-.+-+=..|.=+.++.+.+.+.+ |+.+....-..
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~---------~~v~lis~D~~R~ga~eQL~~~a~~l---~vp~~~~~~~~----- 66 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKG---------KKVALISADTYRIGAVEQLKTYAEIL---GVPFYVARTES----- 66 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT-----------EEEEEESTSSTHHHHHHHHHHHHH---TEEEEESSTTS-----
T ss_pred EEEECCCCCchHhHHHHHHHHHhhcc---------ccceeecCCCCCccHHHHHHHHHHHh---ccccchhhcch-----
Confidence 68899999999987655444443332 12234444456777888888887754 44443311110
Q ss_pred hhccccEEEcchhH-H-HHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEccccC
Q 000114 594 QIEETQIIVTTPEK-W-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (2158)
Q Consensus 594 ~~~~~~IiV~TPek-l-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlp 671 (2158)
.|.. + +.+.+ ...++.++|+||-+-+. +.-...+..+....+...+.--++.+|||..
T Consensus 67 ----------~~~~~~~~~l~~-----~~~~~~D~vlIDT~Gr~-----~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~ 126 (196)
T PF00448_consen 67 ----------DPAEIAREALEK-----FRKKGYDLVLIDTAGRS-----PRDEELLEELKKLLEALNPDEVHLVLSATMG 126 (196)
T ss_dssp ----------CHHHHHHHHHHH-----HHHTTSSEEEEEE-SSS-----STHHHHHHHHHHHHHHHSSSEEEEEEEGGGG
T ss_pred ----------hhHHHHHHHHHH-----HhhcCCCEEEEecCCcc-----hhhHHHHHHHHHHhhhcCCccceEEEecccC
Confidence 1111 1 11111 11234789999998643 3333344444444444455566788999975
Q ss_pred ChHHHHHHH
Q 000114 672 NYEDVALFL 680 (2158)
Q Consensus 672 n~~dv~~~l 680 (2158)
. +++....
T Consensus 127 ~-~~~~~~~ 134 (196)
T PF00448_consen 127 Q-EDLEQAL 134 (196)
T ss_dssp G-HHHHHHH
T ss_pred h-HHHHHHH
Confidence 3 4544433
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.21 Score=70.18 Aligned_cols=62 Identities=18% Similarity=0.185 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~ 566 (2158)
..|++-|.+++..+..++.-++|.|+-|+|||.+.- ++...+.. .+.+++-++||-.-+..+
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~e~----------~G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREAWEA----------AGYRVVGGALAGKAAEGL 441 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHHHHH----------cCCeEEEEcCcHHHHHHH
Confidence 479999999999887666678999999999996543 33333332 245899999997666554
|
|
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.15 Score=68.44 Aligned_cols=151 Identities=17% Similarity=0.178 Sum_probs=95.5
Q ss_pred CCCHHHHHHHHH---HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKS---ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 495 ~l~~iQ~~~i~~---~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
.|+.+|..-++. +|+.+=|-|+.-.-|-|||..- +.+|.++.-.... -+ --+||+||--+. .+.-+|+
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQt-ISllAhLACeegn------WG-PHLIVVpTsviL-nWEMElK 685 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQT-ISLLAHLACEEGN------WG-PHLIVVPTSVIL-NWEMELK 685 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHH-HHHHHHHHhcccC------CC-CceEEeechhhh-hhhHHHh
Confidence 578889887764 4667778999999999999654 2333333322111 12 247788986543 3444666
Q ss_pred hhcccCCcEEEEEeCCCccCHhh---h---ccccEEEcchhHH-HHHHhccCCCccccccceEEeecccccccCChhhHH
Q 000114 572 NRLQMYDVKVRELSGDQTLTRQQ---I---EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~---~---~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le 644 (2158)
+++. |+++..++|.....+.. + +..+|.|++...+ ..+.- ..-.+..++|+||+|.+...+...|+
T Consensus 686 RwcP--glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A-----FkrkrWqyLvLDEaqnIKnfksqrWQ 758 (1958)
T KOG0391|consen 686 RWCP--GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA-----FKRKRWQYLVLDEAQNIKNFKSQRWQ 758 (1958)
T ss_pred hhCC--cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH-----HHhhccceeehhhhhhhcchhHHHHH
Confidence 6544 78999999976533322 2 3457888887754 11111 11123589999999999876666677
Q ss_pred HHHHHHHHHHhhccccccEEEEcccc
Q 000114 645 SIVARTVRQIETTKEHIRLVGLSATL 670 (2158)
Q Consensus 645 ~iv~r~~~~~~~~~~~~riv~lSATl 670 (2158)
+++.- ..-|.++|+.|.
T Consensus 759 Allnf---------nsqrRLLLtgTP 775 (1958)
T KOG0391|consen 759 ALLNF---------NSQRRLLLTGTP 775 (1958)
T ss_pred HHhcc---------chhheeeecCCc
Confidence 76541 233457788883
|
|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.29 Score=68.90 Aligned_cols=61 Identities=18% Similarity=0.049 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
..|++-|.+++..+..++.-++|.|+.|+|||.+. -++...|.. .+. +++-++||---+..
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~--~G~--~V~g~ApTgkAA~~ 440 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEA--AGY--RVVGGALAGKAAEG 440 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHH--cCC--eEEEEcCcHHHHHH
Confidence 47999999999998766777899999999999665 344454544 233 88999999665544
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.43 Score=56.68 Aligned_cols=26 Identities=27% Similarity=0.537 Sum_probs=19.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHh
Q 000114 512 DNILLCAPTGAGKTNVAVLTILQQLAL 538 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~ 538 (2158)
.++++++|+|+|||..+. +|...+..
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~ 125 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLL 125 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHh
Confidence 469999999999997764 44444443
|
|
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.07 Score=72.56 Aligned_cols=84 Identities=26% Similarity=0.268 Sum_probs=64.5
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhh
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~ 573 (2158)
..||+-|.+|+. .+.++++|.|..|||||.+..--+...+..+.. .+-+|++++.++..|.++.+++..+
T Consensus 195 ~~L~~~Q~~av~---~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~-------~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 195 SPLNPSQARAVV---NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQA-------QPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred CCCCHHHHHHHh---CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCC-------CHHHeEEEeccHHHHHHHHHHHHHh
Confidence 368999999885 345679999999999999887766666654321 2347999999999999999999876
Q ss_pred cccCCcEEEEEeCCCccCHhhhccccEEEcchhHH
Q 000114 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW 608 (2158)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekl 608 (2158)
++ ...|-|+|-..|
T Consensus 265 lg---------------------~~~v~v~TFHSl 278 (684)
T PRK11054 265 LG---------------------TEDITARTFHAL 278 (684)
T ss_pred cC---------------------CCCcEEEeHHHH
Confidence 42 035778888876
|
|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.063 Score=73.51 Aligned_cols=86 Identities=20% Similarity=0.163 Sum_probs=65.4
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.||+-|.+|+.. ...+++|.|..|||||.+...-+.+.+..... +.-+|++++.|+..|.++.+++.+.+
T Consensus 2 ~Ln~~Q~~av~~---~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v-------~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-------QARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC-------CHHHeeeEechHHHHHHHHHHHHHHh
Confidence 489999999864 34679999999999999988777777754211 23479999999999999999998765
Q ss_pred ccCCcEEEEEeCCCccCHhhhccccEEEcchhHH
Q 000114 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW 608 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekl 608 (2158)
+.. ....+.|+|...|
T Consensus 72 ~~~------------------~~~~v~i~TfHS~ 87 (672)
T PRK10919 72 GRK------------------EARGLMISTFHTL 87 (672)
T ss_pred Ccc------------------cccCcEEEcHHHH
Confidence 320 0134778898886
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.35 Score=55.66 Aligned_cols=124 Identities=16% Similarity=0.175 Sum_probs=71.5
Q ss_pred cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcccC
Q 000114 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEK 1438 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~ 1438 (2158)
.+++++|||+|||....--..+...+ +..+..+-+=..|.=+.++.+.+.+.+ |+.+....-..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l----~vp~~~~~~~~--------- 66 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEIL----GVPFYVARTES--------- 66 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHH----TEEEEESSTTS---------
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHh----ccccchhhcch---------
Confidence 37889999999998764333322222 332334455567888888888777655 44543322111
Q ss_pred CcEEEeCHHHH-HHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC
Q 000114 1439 GQIIISTPEKW-DALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1439 ~~IIV~TPe~l-~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n 1513 (2158)
.|..+ ...++. ..-++.++|+||=+-+. +.-+..+..++.+.....+.-.++.+|||...
T Consensus 67 ------~~~~~~~~~l~~----~~~~~~D~vlIDT~Gr~-----~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~ 127 (196)
T PF00448_consen 67 ------DPAEIAREALEK----FRKKGYDLVLIDTAGRS-----PRDEELLEELKKLLEALNPDEVHLVLSATMGQ 127 (196)
T ss_dssp ------CHHHHHHHHHHH----HHHTTSSEEEEEE-SSS-----STHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG
T ss_pred ------hhHHHHHHHHHH----HhhcCCCEEEEecCCcc-----hhhHHHHHHHHHHhhhcCCccceEEEecccCh
Confidence 12111 112222 11245789999987643 33344667777776666666778889999854
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.81 Score=57.10 Aligned_cols=143 Identities=17% Similarity=0.241 Sum_probs=80.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCcc
Q 000114 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~ 590 (2158)
+..+.+.||||.|||....-.+.+....... .+..+|=+=..|-=|.++.+.+.+.+ |+.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-------~kVaiITtDtYRIGA~EQLk~Ya~im---~vp~--------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKK-------KKVAIITTDTYRIGAVEQLKTYADIM---GVPL--------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccC-------cceEEEEeccchhhHHHHHHHHHHHh---CCce---------
Confidence 5678999999999997654433344322211 12223333344555777777776654 3333
Q ss_pred CHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000114 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2158)
Q Consensus 591 ~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATl 670 (2158)
.+|-+|.-++.-. ..+++.++|.||=+-+ ++.=...++.+........+--..+.+|||
T Consensus 264 ---------~vv~~~~el~~ai------~~l~~~d~ILVDTaGr-----s~~D~~~i~el~~~~~~~~~i~~~Lvlsat- 322 (407)
T COG1419 264 ---------EVVYSPKELAEAI------EALRDCDVILVDTAGR-----SQYDKEKIEELKELIDVSHSIEVYLVLSAT- 322 (407)
T ss_pred ---------EEecCHHHHHHHH------HHhhcCCEEEEeCCCC-----CccCHHHHHHHHHHHhccccceEEEEEecC-
Confidence 3444565552222 2345668888887743 333333344444333333334456789999
Q ss_pred CChHHHHHHHhccccCceEEecCCcccccceeEEE
Q 000114 671 PNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYI 705 (2158)
Q Consensus 671 pn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~ 705 (2158)
..++|+...+. .|+.+++...++
T Consensus 323 ~K~~dlkei~~------------~f~~~~i~~~I~ 345 (407)
T COG1419 323 TKYEDLKEIIK------------QFSLFPIDGLIF 345 (407)
T ss_pred cchHHHHHHHH------------HhccCCcceeEE
Confidence 46788877664 356666665443
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.092 Score=63.06 Aligned_cols=124 Identities=19% Similarity=0.245 Sum_probs=71.4
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCC--ceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETG--VMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~--~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~ 1435 (2158)
.|++|+|+||.|||.+..-..-.|-....... -|.+++-+|...-....|..+-..++-..+- .+.....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~------~~~~~~~-- 133 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP------RDRVAKL-- 133 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC------CCCHHHH--
Confidence 48999999999999865332222211111111 1344566788777777777766565432100 0000000
Q ss_pred ccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEec
Q 000114 1436 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALS 1508 (2158)
Q Consensus 1436 l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lS 1508 (2158)
-.+...+++. -+++++||||+|.+..-.+..-+.+++-++++...+ .+.+|++.
T Consensus 134 ----------~~~~~~llr~-------~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL--~ipiV~vG 187 (302)
T PF05621_consen 134 ----------EQQVLRLLRR-------LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL--QIPIVGVG 187 (302)
T ss_pred ----------HHHHHHHHHH-------cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc--CCCeEEec
Confidence 0111233333 467899999999987655555677888888887654 46666653
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.1 Score=69.65 Aligned_cols=123 Identities=20% Similarity=0.199 Sum_probs=82.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
+..+|.-|++|+..++...+-.+|.|=+|+|||......| +.+.. .++ +++..+=|..-++-+.-+++ .++
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LI-kiL~~--~gk--kVLLtsyThsAVDNILiKL~-~~~--- 737 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLI-KILVA--LGK--KVLLTSYTHSAVDNILIKLK-GFG--- 737 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHH-HHHHH--cCC--eEEEEehhhHHHHHHHHHHh-ccC---
Confidence 5689999999999999888889999999999997654433 33322 244 89999999988888887776 332
Q ss_pred CcEEEEEc---------------CCcchh-----hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccccc
Q 000114 1419 GMRVVELT---------------GETAMD-----LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1419 g~~v~~lt---------------G~~~~~-----~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
+.+..+. .+.+.. .+.+.+..||.+|-=-+...+. ..+.++++|||||-.+.
T Consensus 738 -i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf------~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 738 -IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF------VNRQFDYCIIDEASQIL 809 (1100)
T ss_pred -cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh------hccccCEEEEccccccc
Confidence 2222221 111111 2455677888888432222111 23568999999998775
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.2 Score=59.28 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=28.0
Q ss_pred cccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEccccC
Q 000114 620 YTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (2158)
Q Consensus 620 ~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlp 671 (2158)
....++.||+||||.|..+-. +-+++.++......|+++..--+.
T Consensus 126 ~~~~fKiiIlDEcdsmtsdaq-------~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDAQ-------AALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCcceEEEEechhhhhHHHH-------HHHHHHHhccccceEEEEEcCChh
Confidence 345578999999998853221 123334455566788888765543
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.51 Score=63.48 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=23.9
Q ss_pred CcE-EEEccCCchhHHHHHHHHHHHHHhhcC---CCceEEEEEc
Q 000114 1358 DNV-LVAAPTGSGKTICSEFAILRNHQKASE---TGVMRAVYIA 1397 (2158)
Q Consensus 1358 ~nv-li~ApTGSGKTl~a~l~il~~l~~~~~---~~~~~~v~Ia 1397 (2158)
.++ +|.|+||+|||.+.-. +++.+..... ...+.++||-
T Consensus 781 nnvLYIyG~PGTGKTATVK~-VLrELqeeaeqk~lp~f~vVYIN 823 (1164)
T PTZ00112 781 NQILYISGMPGTGKTATVYS-VIQLLQHKTKQKLLPSFNVFEIN 823 (1164)
T ss_pred CceEEEECCCCCCHHHHHHH-HHHHHHHHHhhccCCCceEEEEe
Confidence 355 5999999999998854 3455433111 1124667774
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.13 Score=54.95 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=27.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q 565 (2158)
..+++++||+|+|||..+...+... ... ...++++.+.......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~-~~~----------~~~~~~~~~~~~~~~~ 45 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL-GPP----------GGGVIYIDGEDILEEV 45 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc-CCC----------CCCEEEECCEEccccC
Confidence 3569999999999998764443222 111 1247888887665443
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.13 Score=54.89 Aligned_cols=45 Identities=27% Similarity=0.406 Sum_probs=28.8
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~ 1406 (2158)
+.++++.||+|+|||.++...+ ..+.. ... .++++.+........
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~-~~~~~--~~~--~~~~~~~~~~~~~~~ 46 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALA-RELGP--PGG--GVIYIDGEDILEEVL 46 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHH-hccCC--CCC--CEEEECCEEccccCH
Confidence 4579999999999998874433 33322 111 477887776554433
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.55 Score=56.89 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=29.2
Q ss_pred cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHH
Q 000114 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~ 1408 (2158)
.+++.|++|+|||..+ .++.+.+... +. .++|+ +..+++.++..
T Consensus 116 gl~l~G~~GtGKThLa-~aia~~l~~~--~~--~v~~~-~~~~ll~~i~~ 159 (268)
T PRK08116 116 GLLLWGSVGTGKTYLA-ACIANELIEK--GV--PVIFV-NFPQLLNRIKS 159 (268)
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHHHc--CC--eEEEE-EHHHHHHHHHH
Confidence 3999999999999887 4677776652 22 45554 45555554433
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.26 Score=59.71 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=17.5
Q ss_pred CcEEEEccCCCchHHHHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAVLTI 532 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~i 532 (2158)
.++++.||+|+|||.++-...
T Consensus 43 ~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHH
Confidence 479999999999998885543
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.072 Score=48.65 Aligned_cols=54 Identities=22% Similarity=0.248 Sum_probs=48.7
Q ss_pred ccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHc
Q 000114 1978 MLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCN 2034 (2158)
Q Consensus 1978 ~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~ 2034 (2158)
.|.++||+++..+++|.+.| +.|+.||...++++...+-++++...+.+.+.++
T Consensus 6 ~L~~I~Gig~~~a~~L~~~G---~~t~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~ 59 (60)
T PF14520_consen 6 DLLSIPGIGPKRAEKLYEAG---IKTLEDLANADPEELAEIPGIGEKTAEKIIEAAR 59 (60)
T ss_dssp HHHTSTTCHHHHHHHHHHTT---CSSHHHHHTSHHHHHHTSTTSSHHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHhcC---CCcHHHHHcCCHHHHhcCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999 9999999999998888877899999999888775
|
... |
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.11 Score=59.51 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=23.8
Q ss_pred EEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcc
Q 000114 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2158)
Q Consensus 1360 vli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP 1398 (2158)
.++.+|+|+|||..+.-.+.+.... +. +++++-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~---g~--~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER---GM--KVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc---CC--eEEEEec
Confidence 6889999999998775554444332 33 7777766
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.76 Score=57.42 Aligned_cols=129 Identities=20% Similarity=0.198 Sum_probs=67.9
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEE-EEc-ccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAV-YIA-PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK 1434 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v-~Ia-P~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~ 1434 (2158)
...+.++||||+|||..+..-... +.. .+. ++. +-+ |.|.-+.++...+.+. .|+.+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~-L~~--~Gk--kVglI~aDt~RiaAvEQLk~yae~----lgipv------------ 299 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQ-FHG--KKK--TVGFITTDHSRIGTVQQLQDYVKT----IGFEV------------ 299 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH-HHH--cCC--cEEEEecCCcchHHHHHHHHHhhh----cCCcE------------
Confidence 356899999999999876444333 322 122 333 333 5554444444444422 23322
Q ss_pred cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh
Q 000114 1435 LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA 1514 (2158)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~ 1514 (2158)
+++.+|..+...+..... -.+.++|+||-+=+.... ...+..+..+.....+...++.+|||.. .
T Consensus 300 ------~v~~d~~~L~~aL~~lk~---~~~~DvVLIDTaGRs~kd-----~~lm~EL~~~lk~~~PdevlLVLsATtk-~ 364 (436)
T PRK11889 300 ------IAVRDEAAMTRALTYFKE---EARVDYILIDTAGKNYRA-----SETVEEMIETMGQVEPDYICLTLSASMK-S 364 (436)
T ss_pred ------EecCCHHHHHHHHHHHHh---ccCCCEEEEeCccccCcC-----HHHHHHHHHHHhhcCCCeEEEEECCccC-h
Confidence 223466666554444221 125789999988654321 1234445544443334445667999864 3
Q ss_pred HHHHHHh
Q 000114 1515 KDLGEWI 1521 (2158)
Q Consensus 1515 ~dl~~wl 1521 (2158)
.++.+.+
T Consensus 365 ~d~~~i~ 371 (436)
T PRK11889 365 KDMIEII 371 (436)
T ss_pred HHHHHHH
Confidence 3444433
|
|
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.16 Score=62.35 Aligned_cols=62 Identities=31% Similarity=0.310 Sum_probs=47.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHH
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa 1403 (2158)
...+++-|.+.+..+...+.|++|+||||||||... -+++..+....+.. ++++|--..|+.
T Consensus 114 ~g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~--ri~tiEd~~El~ 175 (299)
T TIGR02782 114 AGIMTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTD--RVVIIEDTRELQ 175 (299)
T ss_pred cCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCc--eEEEECCchhhc
Confidence 345778888999888888899999999999999876 55666655422234 888888888773
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.57 Score=58.91 Aligned_cols=128 Identities=17% Similarity=0.162 Sum_probs=65.4
Q ss_pred cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc--ccHHHHHHHHHHHHhhcccCCcEEEEEeC
Q 000114 509 SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELSG 586 (2158)
Q Consensus 509 ~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~ia--P~kaLa~q~~~~~~~~~~~~gi~v~~l~G 586 (2158)
..+.++++++|||+|||..+...+.+...... ..++.++. +.+.=+.++.+.+.+.+ |+.+...
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G---------~~~V~lit~D~~R~ga~EqL~~~a~~~---gv~~~~~-- 200 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFG---------ASKVALLTTDSYRIGGHEQLRIFGKIL---GVPVHAV-- 200 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC---------CCeEEEEecccccccHHHHHHHHHHHc---CCceEec--
Confidence 44568999999999999877555444433221 11343332 22334666666666543 4444322
Q ss_pred CCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEE
Q 000114 587 DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666 (2158)
Q Consensus 587 d~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~l 666 (2158)
.+++.+.....+ +.+.++|+||.+=+.. +...+...+..+. ......-+++.+
T Consensus 201 ----------------~~~~~l~~~l~~------l~~~DlVLIDTaG~~~--~d~~l~e~La~L~---~~~~~~~~lLVL 253 (374)
T PRK14722 201 ----------------KDGGDLQLALAE------LRNKHMVLIDTIGMSQ--RDRTVSDQIAMLH---GADTPVQRLLLL 253 (374)
T ss_pred ----------------CCcccHHHHHHH------hcCCCEEEEcCCCCCc--ccHHHHHHHHHHh---ccCCCCeEEEEe
Confidence 233322122221 2346899999996432 2122222222221 112233467889
Q ss_pred ccccCChHHHHH
Q 000114 667 SATLPNYEDVAL 678 (2158)
Q Consensus 667 SATlpn~~dv~~ 678 (2158)
|||.. .+++..
T Consensus 254 sAts~-~~~l~e 264 (374)
T PRK14722 254 NATSH-GDTLNE 264 (374)
T ss_pred cCccC-hHHHHH
Confidence 99964 344433
|
|
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.19 Score=66.42 Aligned_cols=146 Identities=16% Similarity=0.253 Sum_probs=79.5
Q ss_pred cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH---HHHHHHh-cCC-CCcEEEEEcCCc
Q 000114 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY---RDWEIKF-GQG-LGMRVVELTGET 1429 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~---~~~~~~f-~~~-~g~~v~~ltG~~ 1429 (2158)
.+.-|+=|.+.||+|||.||+-.|+..-.. -|-.+-|++||+.|+-.-++ ...++.| +.. .+.+.-.++-+.
T Consensus 72 ~~~lNiDI~METGTGKTy~YlrtmfeLhk~---YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~ 148 (985)
T COG3587 72 DDKLNIDILMETGTGKTYTYLRTMFELHKK---YGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDE 148 (985)
T ss_pred CCcceeeEEEecCCCceeeHHHHHHHHHHH---hCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeech
Confidence 344578899999999999998888876555 23348999999998865433 3344445 322 223333332221
Q ss_pred ch---hhhcccCCcEEEeCHHHHHHH------Hhh----hhc-----cccc---cce-eEEEecccccccCCCCChHHHH
Q 000114 1430 AM---DLKLLEKGQIIISTPEKWDAL------SRR----WKQ-----RKYV---QQV-SLFIIDELHLIGGQGGPVLEVI 1487 (2158)
Q Consensus 1430 ~~---~~~~l~~~~IIV~TPe~l~~l------~r~----~~~-----~~~l---~~v-~llIiDEaH~l~~~~g~~~e~~ 1487 (2158)
.. ....-..+.+++.|-..+..- +.. ... ...+ ..+ -.+||||-|.+..+. - .
T Consensus 149 ~~~~~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~~-k----~ 223 (985)
T COG3587 149 DIEKFKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGDD-K----T 223 (985)
T ss_pred HHHHHhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccch-H----H
Confidence 11 111223346666665443211 000 000 1111 111 369999999886421 1 2
Q ss_pred HHHHHHHHhhcCCCceEEEeccCCCC
Q 000114 1488 VSRMRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1488 isrl~~i~~~~~~~~riV~lSATl~n 1513 (2158)
...+..+ .+.-++=+|||.++
T Consensus 224 ~~~i~~l-----~pl~ilRfgATfkd 244 (985)
T COG3587 224 YGAIKQL-----NPLLILRFGATFKD 244 (985)
T ss_pred HHHHHhh-----CceEEEEecccchh
Confidence 2222222 25566778999865
|
|
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.15 Score=62.96 Aligned_cols=62 Identities=21% Similarity=0.272 Sum_probs=47.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHH
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa 1403 (2158)
...+++.|.+.+..+...+.|++|+|+||||||... -+++..+....+.. +++.|-...||.
T Consensus 126 ~g~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~--rivtiEd~~El~ 187 (323)
T PRK13833 126 SKIMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASAPED--RLVILEDTAEIQ 187 (323)
T ss_pred cCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCc--eEEEecCCcccc
Confidence 345788999999998888899999999999999776 55666654322333 788887777763
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.45 Score=61.98 Aligned_cols=108 Identities=13% Similarity=0.185 Sum_probs=61.5
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhccc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE 1437 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~ 1437 (2158)
..+++.||+|+|||... .++.+.+....++. +++|+.+ .++..+....+... .
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~--~v~yv~~-~~f~~~~~~~l~~~------~----------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDL--KVSYMSG-DEFARKAVDILQKT------H----------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCC--eEEEEEH-HHHHHHHHHHHHHh------h-----------------
Confidence 35899999999999666 56666655433333 7777765 45555554444310 0
Q ss_pred CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCC
Q 000114 1438 KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (2158)
Q Consensus 1438 ~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl 1511 (2158)
+.+..+..+ +.+++++||||+|.+.... ...+.+..-+..+.. .+.++|+.|-..
T Consensus 195 ---------~~~~~~~~~------~~~~dvLiIDDiq~l~~k~-~~~e~lf~l~N~~~~---~~k~iIltsd~~ 249 (450)
T PRK14087 195 ---------KEIEQFKNE------ICQNDVLIIDDVQFLSYKE-KTNEIFFTIFNNFIE---NDKQLFFSSDKS 249 (450)
T ss_pred ---------hHHHHHHHH------hccCCEEEEeccccccCCH-HHHHHHHHHHHHHHH---cCCcEEEECCCC
Confidence 111112222 4567899999999885322 234445554544432 244665555443
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.49 Score=56.24 Aligned_cols=52 Identities=10% Similarity=0.064 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHhc--CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcc
Q 000114 1342 FNPIQTQVFTVLYN--TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2158)
Q Consensus 1342 ~~~iQ~q~~~~l~~--~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP 1398 (2158)
.|.....++..+.. +..+++++||+|+|||..+. ++.+.+.. .+. +++|+.-
T Consensus 28 ~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~-a~~~~~~~--~~~--~v~y~~~ 81 (235)
T PRK08084 28 DNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLH-AACAELSQ--RGR--AVGYVPL 81 (235)
T ss_pred ccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHH-HHHHHHHh--CCC--eEEEEEH
Confidence 44444555555432 33579999999999997774 33333333 122 6666644
|
|
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.26 Score=66.05 Aligned_cols=122 Identities=20% Similarity=0.273 Sum_probs=80.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
...||.-|++|+..++...+-.||.|=.|+|||.+....|--.+. .+.+|+..+=|..-+..+.-.+..
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~-----------~gkkVLLtsyThsAVDNILiKL~~ 735 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVA-----------LGKKVLLTSYTHSAVDNILIKLKG 735 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHH-----------cCCeEEEEehhhHHHHHHHHHHhc
Confidence 358999999999999999888999999999999765443322222 234899999998888777666654
Q ss_pred hcccCCcEEEEEeCCCccCH--------------------hhhccccEEEcchhHH-HHHHhccCCCccccccceEEeec
Q 000114 573 RLQMYDVKVRELSGDQTLTR--------------------QQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDE 631 (2158)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~--------------------~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDE 631 (2158)
.++.+..+..+....+ ...+.+.|+.||-=-+ +.+ ...+.+++.||||
T Consensus 736 ----~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl-------f~~R~FD~cIiDE 804 (1100)
T KOG1805|consen 736 ----FGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL-------FVNRQFDYCIIDE 804 (1100)
T ss_pred ----cCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh-------hhccccCEEEEcc
Confidence 3444333322222211 1235677888884322 112 2234589999999
Q ss_pred ccccc
Q 000114 632 IHLLH 636 (2158)
Q Consensus 632 aH~l~ 636 (2158)
|-.++
T Consensus 805 ASQI~ 809 (1100)
T KOG1805|consen 805 ASQIL 809 (1100)
T ss_pred ccccc
Confidence 98664
|
|
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
Probab=93.61 E-value=1.2 Score=58.74 Aligned_cols=148 Identities=15% Similarity=0.198 Sum_probs=84.7
Q ss_pred CCCHHHHHHHHHHHcC--CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 495 QLNRVQSRVYKSALSS--ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~--~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
-++|.=.+-++.+++. ..-.++.+|=|.|||.+..+.+...+.. .+.+|+|.+|...-++++++.+..
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f----------~Gi~IlvTAH~~~ts~evF~rv~~ 238 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF----------LEIDIVVQAQRKTMCLTLYNRVET 238 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh----------cCCeEEEECCChhhHHHHHHHHHH
Confidence 3455555555555432 2346788999999999887666654432 135899999999999999999888
Q ss_pred hcccCC--------cEEEEEeCCCc-----cCHhhh-ccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccC
Q 000114 573 RLQMYD--------VKVRELSGDQT-----LTRQQI-EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN 638 (2158)
Q Consensus 573 ~~~~~g--------i~v~~l~Gd~~-----~~~~~~-~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~ 638 (2158)
.+..++ -++....|+.. ...... ..+.|.+++-. . +...-..++++|+|||+.+.+
T Consensus 239 ~le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars--------~-~s~RG~~~DLLIVDEAAfI~~- 308 (752)
T PHA03333 239 VVHAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS--------P-NAARGQNPDLVIVDEAAFVNP- 308 (752)
T ss_pred HHHHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc--------C-CCcCCCCCCEEEEECcccCCH-
Confidence 776332 11222333221 000000 11223332211 1 111113468999999998864
Q ss_pred ChhhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000114 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2158)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riv~lSATl 670 (2158)
+.++.++--+ . ....+++.+|-+-
T Consensus 309 --~~l~aIlP~l----~--~~~~k~IiISS~~ 332 (752)
T PHA03333 309 --GALLSVLPLM----A--VKGTKQIHISSPV 332 (752)
T ss_pred --HHHHHHHHHH----c--cCCCceEEEeCCC
Confidence 3455543322 2 2467778888774
|
|
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.19 Score=68.39 Aligned_cols=97 Identities=21% Similarity=0.231 Sum_probs=68.2
Q ss_pred HHHHhcCC--CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc-CCCceEEEEEcccHHHHHHHHH
Q 000114 1332 YEALYQGF--KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYR 1408 (2158)
Q Consensus 1332 ~~~l~~gf--~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~-~~~~~~~v~IaP~raLa~q~~~ 1408 (2158)
+..+|..+ ..+|+-|.+|+. .+.++++|.|..|||||.+..--+...+.... ... ++++++.++..|.++.+
T Consensus 185 ~~~~f~~~e~~~L~~~Q~~av~---~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~--~IL~ltft~~AA~em~e 259 (684)
T PRK11054 185 YADFFSQVESSPLNPSQARAVV---NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPE--QILLLAFGRQAAEEMDE 259 (684)
T ss_pred HHHHHHhccCCCCCHHHHHHHh---CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHH--HeEEEeccHHHHHHHHH
Confidence 45555532 469999999985 34567999999999999887555544444321 222 89999999999999988
Q ss_pred HHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHH-HHHhh
Q 000114 1409 DWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWD-ALSRR 1455 (2158)
Q Consensus 1409 ~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~-~l~r~ 1455 (2158)
++..+++ ...|-|+|-..|. .+++.
T Consensus 260 RL~~~lg----------------------~~~v~v~TFHSlal~Il~~ 285 (684)
T PRK11054 260 RIRERLG----------------------TEDITARTFHALALHIIQQ 285 (684)
T ss_pred HHHHhcC----------------------CCCcEEEeHHHHHHHHHHH
Confidence 8875542 1257888877774 34444
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.22 Score=59.85 Aligned_cols=121 Identities=19% Similarity=0.150 Sum_probs=64.0
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccC
Q 000114 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~ 591 (2158)
.|++++|+||.|||.+.. +....++...+.-...-+-+++-+|..+=....+..+-..++ ..... .+
T Consensus 62 p~lLivG~snnGKT~Ii~----rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg---aP~~~--~~---- 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIE----RFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG---APYRP--RD---- 128 (302)
T ss_pred CceEEecCCCCcHHHHHH----HHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC---cccCC--CC----
Confidence 489999999999997542 222333322111111224455567777766666666554332 22110 00
Q ss_pred HhhhccccEEEcchhHH----HHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEE
Q 000114 592 RQQIEETQIIVTTPEKW----DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666 (2158)
Q Consensus 592 ~~~~~~~~IiV~TPekl----d~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~l 666 (2158)
+..+. ..+.+.. .++++||||+|.+..+....-..+++-+.... ..-.+.+|++
T Consensus 129 ------------~~~~~~~~~~~llr~~-------~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~--NeL~ipiV~v 186 (302)
T PF05621_consen 129 ------------RVAKLEQQVLRLLRRL-------GVRMLIIDEFHNLLAGSYRKQREFLNALKFLG--NELQIPIVGV 186 (302)
T ss_pred ------------CHHHHHHHHHHHHHHc-------CCcEEEeechHHHhcccHHHHHHHHHHHHHHh--hccCCCeEEe
Confidence 11111 1233332 47999999999987654444444444443332 2335666765
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.51 Score=55.92 Aligned_cols=36 Identities=19% Similarity=0.117 Sum_probs=22.9
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP 1398 (2158)
..+++.||+|+|||..+ .++.+.+.+. +. +++|+.-
T Consensus 40 ~~l~l~G~~G~GKThL~-~ai~~~~~~~--~~--~~~y~~~ 75 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLL-KAVSNHYLLN--QR--TAIYIPL 75 (229)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHc--CC--CeEEeeH
Confidence 34799999999999777 3444444331 22 5666553
|
|
| >COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.8 Score=61.53 Aligned_cols=144 Identities=19% Similarity=0.276 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHcCCC-cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcc
Q 000114 497 NRVQSRVYKSALSSAD-NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ 575 (2158)
Q Consensus 497 ~~iQ~~~i~~~l~~~~-nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~ 575 (2158)
..-|.+.+..++..+. -+++.|.=|=|||.++-+++....... ....|++.+|+++-++....-..+.+.
T Consensus 216 Q~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~---------~~~~iiVTAP~~~nv~~Lf~fa~~~l~ 286 (758)
T COG1444 216 QAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA---------GSVRIIVTAPTPANVQTLFEFAGKGLE 286 (758)
T ss_pred HHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc---------CCceEEEeCCCHHHHHHHHHHHHHhHH
Confidence 3334445566666655 678999999999999887773332221 134899999999999998888877777
Q ss_pred cCCcEEEEEeCC-CccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHH
Q 000114 576 MYDVKVRELSGD-QTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQI 654 (2158)
Q Consensus 576 ~~gi~v~~l~Gd-~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~ 654 (2158)
.+|.+-...... .......-....|=+-+|..- . ..-+++|||||=.++ -|.++.++.+
T Consensus 287 ~lg~~~~v~~d~~g~~~~~~~~~~~i~y~~P~~a-----------~-~~~DllvVDEAAaIp---lplL~~l~~~----- 346 (758)
T COG1444 287 FLGYKRKVAPDALGEIREVSGDGFRIEYVPPDDA-----------Q-EEADLLVVDEAAAIP---LPLLHKLLRR----- 346 (758)
T ss_pred HhCCccccccccccceeeecCCceeEEeeCcchh-----------c-ccCCEEEEehhhcCC---hHHHHHHHhh-----
Confidence 666543222111 111111112334666677631 1 115899999998764 2334444332
Q ss_pred hhccccccEEEEccccCChHH
Q 000114 655 ETTKEHIRLVGLSATLPNYED 675 (2158)
Q Consensus 655 ~~~~~~~riv~lSATlpn~~d 675 (2158)
.+.++||.|+..|+-
T Consensus 347 ------~~rv~~sTTIhGYEG 361 (758)
T COG1444 347 ------FPRVLFSTTIHGYEG 361 (758)
T ss_pred ------cCceEEEeeeccccc
Confidence 245899999987753
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.58 Score=58.22 Aligned_cols=123 Identities=15% Similarity=0.148 Sum_probs=67.3
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcc--cHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP--LEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP--~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~ 1435 (2158)
.-+++++|+|+|||....-.+ ..+.. .+. +++++.. .|.-+.++...+...+ |+.+.. +....
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~--~g~--~V~li~~Dt~R~~a~eqL~~~a~~l----gv~v~~--~~~g~---- 205 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKK--NGF--SVVIAAGDTFRAGAIEQLEEHAERL----GVKVIK--HKYGA---- 205 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHH--cCC--eEEEecCCcCcHHHHHHHHHHHHHc----CCceec--ccCCC----
Confidence 357889999999998653333 23333 222 5655543 3455555555555444 344321 11111
Q ss_pred ccCCcEEEeCHHH-HHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC
Q 000114 1436 LEKGQIIISTPEK-WDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1436 l~~~~IIV~TPe~-l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n 1513 (2158)
.|.. +....... .....++|+||.++++.... ..+..++.+.....+...++.++||..+
T Consensus 206 ---------dp~~v~~~ai~~~----~~~~~DvVLIDTaGr~~~~~-----~lm~eL~~i~~~~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 206 ---------DPAAVAYDAIEHA----KARGIDVVLIDTAGRMHTDA-----NLMDELKKIVRVTKPDLVIFVGDALAGN 266 (336)
T ss_pred ---------CHHHHHHHHHHHH----HhCCCCEEEEECCCccCCcH-----HHHHHHHHHHHhhCCceEEEeeccccch
Confidence 1211 11111111 12456899999999875322 2556666665555667778889998764
|
|
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.13 Score=64.95 Aligned_cols=151 Identities=16% Similarity=0.170 Sum_probs=79.6
Q ss_pred EEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh-------
Q 000114 1362 VAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK------- 1434 (2158)
Q Consensus 1362 i~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~------- 1434 (2158)
..+.||||||++..-.|+....++. . .-++.|..-..+......+..-.....=.+-....+|.....+
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgy--r--~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fse 77 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGY--R--NFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSE 77 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhch--h--hEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCc
Confidence 3578999999998778887776621 1 5677777666665554433211110000000111222222211
Q ss_pred cccCCcEEEeCHHHHHHHHhhhhccc----cccceeE-EEecccccccCCC-C---------ChHHHHHHHHHHHHhhcC
Q 000114 1435 LLEKGQIIISTPEKWDALSRRWKQRK----YVQQVSL-FIIDELHLIGGQG-G---------PVLEVIVSRMRYIASQVE 1499 (2158)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~l~r~~~~~~----~l~~v~l-lIiDEaH~l~~~~-g---------~~~e~~isrl~~i~~~~~ 1499 (2158)
.-..-.|.++|.+.+...+.+.+... .+.+..+ ++-||+|++.... + ..||..+. ..-..+
T Consensus 78 hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~----la~~~n 153 (812)
T COG3421 78 HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVK----LALEQN 153 (812)
T ss_pred cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHH----HHHhcC
Confidence 11123799999999876555433221 3444444 5679999997521 1 12333221 111124
Q ss_pred CCceEEEeccCCCChHHHHHH
Q 000114 1500 NKIRIVALSTSLANAKDLGEW 1520 (2158)
Q Consensus 1500 ~~~riV~lSATl~n~~dl~~w 1520 (2158)
++--++.+|||++...++..-
T Consensus 154 kd~~~lef~at~~k~k~v~~k 174 (812)
T COG3421 154 KDNLLLEFSATIPKEKSVEDK 174 (812)
T ss_pred CCceeehhhhcCCccccHHHH
Confidence 556667789999865555443
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.57 Score=58.90 Aligned_cols=122 Identities=12% Similarity=0.180 Sum_probs=63.8
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEc--ccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhh
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA--PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~Ia--P~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~ 1433 (2158)
.+.++++++|||+|||.....-+.+.... .... ++.++. +.|.-+.++...|.+.+ |+.+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~-~G~~--~V~lit~D~~R~ga~EqL~~~a~~~----gv~~~~--------- 199 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMR-FGAS--KVALLTTDSYRIGGHEQLRIFGKIL----GVPVHA--------- 199 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCC--eEEEEecccccccHHHHHHHHHHHc----CCceEe---------
Confidence 46679999999999998874444333322 1112 333332 23444566666666443 333322
Q ss_pred hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC
Q 000114 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1434 ~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n 1513 (2158)
+.+++.+...+.+ +.+.++++||.+-...-+ . .+...+..+.......-+++.+|||...
T Consensus 200 ---------~~~~~~l~~~l~~------l~~~DlVLIDTaG~~~~d--~---~l~e~La~L~~~~~~~~~lLVLsAts~~ 259 (374)
T PRK14722 200 ---------VKDGGDLQLALAE------LRNKHMVLIDTIGMSQRD--R---TVSDQIAMLHGADTPVQRLLLLNATSHG 259 (374)
T ss_pred ---------cCCcccHHHHHHH------hcCCCEEEEcCCCCCccc--H---HHHHHHHHHhccCCCCeEEEEecCccCh
Confidence 2233333333333 345689999999643211 1 1333333332222234568889999743
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.33 Score=53.58 Aligned_cols=40 Identities=35% Similarity=0.476 Sum_probs=26.9
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHH
Q 000114 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (2158)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~ 564 (2158)
++|+||+|+|||..+...+...... +..++|+.....+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~-----------~~~v~~~~~e~~~~~ 41 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK-----------GGKVVYVDIEEEIEE 41 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc-----------CCEEEEEECCcchHH
Confidence 6899999999998775554443321 236888877655443
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.26 Score=68.43 Aligned_cols=110 Identities=19% Similarity=0.116 Sum_probs=72.6
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhh-cCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~-~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
..|||-|.+|+.. ...+++|.|..|||||.+..--+...+... -+.. ++++|+.|+..|.++.+++.+.++..
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~--~IL~lTFTnkAA~em~~Rl~~~~~~~- 76 (715)
T TIGR01075 3 DGLNDKQREAVAA---PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPH--SIMAVTFTNKAAAEMRHRIGALLGTS- 76 (715)
T ss_pred cccCHHHHHHHcC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHH--HeEeeeccHHHHHHHHHHHHHHhccc-
Confidence 4699999999864 356799999999999988755555555431 1223 79999999999999888887543310
Q ss_pred CcEEEEEcCCcchhhhcccCCcEEEeCHHHHHH-HHhhhhccccccceeEEEeccccc
Q 000114 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDA-LSRRWKQRKYVQQVSLFIIDELHL 1475 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~-l~r~~~~~~~l~~v~llIiDEaH~ 1475 (2158)
...+.|+|...|.. ++|+......+. -.+-|+|+.+.
T Consensus 77 -------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d~ 114 (715)
T TIGR01075 77 -------------------ARGMWIGTFHGLAHRLLRAHHLDAGLP-QDFQILDSDDQ 114 (715)
T ss_pred -------------------ccCcEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHHH
Confidence 12577899887753 555432111111 12346677653
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.56 Score=55.67 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=23.2
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~Ia 1397 (2158)
+.+++.||+|+|||..+. ++...+.+ .+. +++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~-a~~~~~~~--~~~--~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL-ALCAAAEQ--AGR--SSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHH--cCC--cEEEEe
Confidence 349999999999997764 44444433 122 677764
|
|
| >PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.042 Score=61.39 Aligned_cols=130 Identities=20% Similarity=0.264 Sum_probs=56.2
Q ss_pred EEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh
Q 000114 515 LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ 594 (2158)
Q Consensus 515 lv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~ 594 (2158)
++.|+=|-|||.+.-+++.+.+.. ...+|++.+|..+=++..++.+...+..++.+............-.
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~----------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK----------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIGQIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------------EEEE-SS--S-HHHHHCC------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh----------cCceEEEecCCHHHHHHHHHHHHhhccccccccccccccccccccc
Confidence 578999999998766665444332 2247999999999888888777665555444431000000000011
Q ss_pred hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEccccCChH
Q 000114 595 IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYE 674 (2158)
Q Consensus 595 ~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~ 674 (2158)
.....|-+..|+.+ ... -...+++|||||=.+. -+.+ .++ -.....+.+|.|+..||
T Consensus 71 ~~~~~i~f~~Pd~l---~~~------~~~~DlliVDEAAaIp---~p~L----~~l-------l~~~~~vv~stTi~GYE 127 (177)
T PF05127_consen 71 FNKQRIEFVAPDEL---LAE------KPQADLLIVDEAAAIP---LPLL----KQL-------LRRFPRVVFSTTIHGYE 127 (177)
T ss_dssp --CCC--B--HHHH---CCT----------SCEEECTGGGS----HHHH----HHH-------HCCSSEEEEEEEBSSTT
T ss_pred cccceEEEECCHHH---HhC------cCCCCEEEEechhcCC---HHHH----HHH-------HhhCCEEEEEeeccccc
Confidence 12456777777742 211 1234899999998763 1122 222 12334577888888776
Q ss_pred HHH
Q 000114 675 DVA 677 (2158)
Q Consensus 675 dv~ 677 (2158)
--.
T Consensus 128 GtG 130 (177)
T PF05127_consen 128 GTG 130 (177)
T ss_dssp BB-
T ss_pred cCC
Confidence 543
|
This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B. |
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.9 Score=60.18 Aligned_cols=71 Identities=11% Similarity=0.054 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
.++|+|...+..+...+- .++..+=..|||.+....++..... .++. .+++++|++.-+..+++.++..+.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~-~ii~~aRq~GKStl~a~~al~~a~~-~~~~--~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRF-NACNLSRQLGKTTVVAIFLLHYVCF-NKDK--NVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred CCcHHHHHHHHHHhcCeE-EEEEEcCcCChHHHHHHHHHHHHHh-CCCC--EEEEEeCCHHHHHHHHHHHHHHHH
Confidence 588999999988755445 4678888999998876444433332 2333 899999999999999988875444
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.8 Score=55.49 Aligned_cols=45 Identities=24% Similarity=0.449 Sum_probs=29.1
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
++++||+|+|||..+. +|.+.+... +..++|+ +...|..++...+
T Consensus 117 l~l~G~~GtGKThLa~-aia~~l~~~----------~~~v~~~-~~~~ll~~i~~~~ 161 (268)
T PRK08116 117 LLLWGSVGTGKTYLAA-CIANELIEK----------GVPVIFV-NFPQLLNRIKSTY 161 (268)
T ss_pred EEEECCCCCCHHHHHH-HHHHHHHHc----------CCeEEEE-EHHHHHHHHHHHH
Confidence 9999999999998775 455655542 1245554 4556655554443
|
|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.14 Score=70.20 Aligned_cols=109 Identities=20% Similarity=0.178 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhh-cCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~-~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g 1419 (2158)
.+|+-|.+|+.. ...+++|.|..|||||.+...-+...+... .+.. ++++|+.|+..|.++.+++.+.++..
T Consensus 2 ~Ln~~Q~~av~~---~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~--~IL~lTFT~kAA~em~~Rl~~~l~~~-- 74 (672)
T PRK10919 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQAR--HIAAVTFTNKAAREMKERVAQTLGRK-- 74 (672)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHH--HeeeEechHHHHHHHHHHHHHHhCcc--
Confidence 489999999864 356799999999999998866666666431 2233 79999999999999888887554320
Q ss_pred cEEEEEcCCcchhhhcccCCcEEEeCHHHHH-HHHhhhhccccccceeEEEecccc
Q 000114 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWD-ALSRRWKQRKYVQQVSLFIIDELH 1474 (2158)
Q Consensus 1420 ~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~-~l~r~~~~~~~l~~v~llIiDEaH 1474 (2158)
....+.|+|...|. .++++......+ .-++-|+|+.+
T Consensus 75 -----------------~~~~v~i~TfHS~~~~iLr~~~~~~g~-~~~~~i~d~~~ 112 (672)
T PRK10919 75 -----------------EARGLMISTFHTLGLDIIKREYAALGM-KSNFSLFDDTD 112 (672)
T ss_pred -----------------cccCcEEEcHHHHHHHHHHHHHHHhCC-CCCCeeCCHHH
Confidence 01257889988774 344442211111 11244667655
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=93.20 E-value=1.1 Score=52.73 Aligned_cols=123 Identities=20% Similarity=0.317 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHcCCC----cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 497 NRVQSRVYKSALSSAD----NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 497 ~~iQ~~~i~~~l~~~~----nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
|..=..+...+..+.+ .++++||+|+|||-. +.++.+.+.... .+.+++|+... +...+....+..
T Consensus 16 N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~--------~~~~v~y~~~~-~f~~~~~~~~~~ 85 (219)
T PF00308_consen 16 NELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHL-LQAIANEAQKQH--------PGKRVVYLSAE-EFIREFADALRD 85 (219)
T ss_dssp THHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHH-HHHHHHHHHHHC--------TTS-EEEEEHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHH-HHHHHHHHHhcc--------ccccceeecHH-HHHHHHHHHHHc
Confidence 4433344444444322 389999999999973 455555554421 23478877643 444444443332
Q ss_pred hcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHH
Q 000114 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (2158)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~ 652 (2158)
...+. +. ..+...++++||.+|.+.+. +.++..+-.+..
T Consensus 86 ------------------------------~~~~~---~~------~~~~~~DlL~iDDi~~l~~~--~~~q~~lf~l~n 124 (219)
T PF00308_consen 86 ------------------------------GEIEE---FK------DRLRSADLLIIDDIQFLAGK--QRTQEELFHLFN 124 (219)
T ss_dssp ------------------------------TSHHH---HH------HHHCTSSEEEEETGGGGTTH--HHHHHHHHHHHH
T ss_pred ------------------------------ccchh---hh------hhhhcCCEEEEecchhhcCc--hHHHHHHHHHHH
Confidence 01121 11 12345799999999998642 223333333333
Q ss_pred HHhhccccccEEEEccccCC
Q 000114 653 QIETTKEHIRLVGLSATLPN 672 (2158)
Q Consensus 653 ~~~~~~~~~riv~lSATlpn 672 (2158)
.+. ..+.++|+.|...|.
T Consensus 125 ~~~--~~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 125 RLI--ESGKQLILTSDRPPS 142 (219)
T ss_dssp HHH--HTTSEEEEEESS-TT
T ss_pred HHH--hhCCeEEEEeCCCCc
Confidence 322 235577777777664
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.16 Score=70.49 Aligned_cols=110 Identities=23% Similarity=0.217 Sum_probs=74.0
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhh
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~ 573 (2158)
..||+-|.+|+.. ...+++|.|..|||||.+..--+...+..... ..-+|++|+-|+..|.++.+++.++
T Consensus 8 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v-------~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAA---PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENA-------SPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCC-------ChhHeEeeeccHHHHHHHHHHHHHH
Confidence 4689999999863 34679999999999999887666666643211 2347999999999999999999886
Q ss_pred cccCCcEEEEEeCCCccCHhhhccccEEEcchhHH-HHHHhccCCCccccccceEEeeccc
Q 000114 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (2158)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH 633 (2158)
++.. ...+.|+|-..| ..+.|.......+. -.+-|+|+.+
T Consensus 78 ~~~~-------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d 118 (721)
T PRK11773 78 LGTS-------------------QGGMWVGTFHGLAHRLLRAHWQDANLP-QDFQILDSDD 118 (721)
T ss_pred hccC-------------------CCCCEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHH
Confidence 5310 124678998886 33344321101111 1245777764
|
|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.18 Score=62.28 Aligned_cols=61 Identities=25% Similarity=0.240 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHH
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEAL 1402 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raL 1402 (2158)
...+++.|.+.+..+...+.|++|+||||||||... -+++..+....+.. ++++|-.+.+|
T Consensus 130 ~g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~~~~~--rivtIEd~~El 190 (319)
T PRK13894 130 RGIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQDPTE--RVFIIEDTGEI 190 (319)
T ss_pred cCCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhcCCCc--eEEEEcCCCcc
Confidence 345788999999988888999999999999999554 55555543212333 78888887766
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.47 Score=52.34 Aligned_cols=40 Identities=38% Similarity=0.523 Sum_probs=26.1
Q ss_pred EEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1360 vli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
++|.||+|+|||..+...+. .+.. .++ .++|+.....+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~-~~~~--~~~--~v~~~~~e~~~~~ 41 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLAL-NIAT--KGG--KVVYVDIEEEIEE 41 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHH-HHHh--cCC--EEEEEECCcchHH
Confidence 68999999999987744333 2322 234 7788776554433
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.24 Score=59.82 Aligned_cols=143 Identities=20% Similarity=0.275 Sum_probs=80.7
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEE-cCCcchh--
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVEL-TGETAMD-- 1432 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~l-tG~~~~~-- 1432 (2158)
.++-++|+|+||.|||..++-.+.+..... +. .++|++.--. ..+++.++-.... ++....+ +|....+
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~--~~--~vly~SlEm~-~~~l~~R~la~~s---~v~~~~i~~g~l~~~e~ 89 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNG--GY--PVLYFSLEMS-EEELAARLLARLS---GVPYNKIRSGDLSDEEF 89 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTT--SS--EEEEEESSS--HHHHHHHHHHHHH---TSTHHHHHCCGCHHHHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhc--CC--eEEEEcCCCC-HHHHHHHHHHHhh---cchhhhhhccccCHHHH
Confidence 356689999999999988866666555541 23 7888875311 1223333322222 1211111 1222211
Q ss_pred ------hhcccCCcEEE-e----CHHHHHHHHhhhhccccccceeEEEecccccccCC--C---CChHHHHHHHHHHHHh
Q 000114 1433 ------LKLLEKGQIII-S----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ--G---GPVLEVIVSRMRYIAS 1496 (2158)
Q Consensus 1433 ------~~~l~~~~IIV-~----TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~--~---g~~~e~~isrl~~i~~ 1496 (2158)
...+....+.| . |++.+....+.++... ..+++||||=+|.+... . ...+..+..+++.++.
T Consensus 90 ~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~--~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~ 167 (259)
T PF03796_consen 90 ERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREG--KKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAK 167 (259)
T ss_dssp HHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHS--TTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhc--cCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 11233334443 3 5556666666654432 78999999999998763 1 2234456777887776
Q ss_pred hcCCCceEEEeccC
Q 000114 1497 QVENKIRIVALSTS 1510 (2158)
Q Consensus 1497 ~~~~~~riV~lSAT 1510 (2158)
.+ ++.+|++|-.
T Consensus 168 ~~--~i~vi~~sQl 179 (259)
T PF03796_consen 168 EL--NIPVIALSQL 179 (259)
T ss_dssp HH--TSEEEEEEEB
T ss_pred Hc--CCeEEEcccc
Confidence 54 7888888764
|
Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C .... |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=93.08 E-value=1.5 Score=54.96 Aligned_cols=131 Identities=14% Similarity=0.168 Sum_probs=75.9
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcc
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l 1436 (2158)
+..+.+.||||.|||..-.=.+.+.... .....+..|=+=-.|-=|.++.+...+. +|+.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~-~~~~kVaiITtDtYRIGA~EQLk~Ya~i----m~vp~-------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVML-KKKKKVAIITTDTYRIGAVEQLKTYADI----MGVPL-------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhh-ccCcceEEEEeccchhhHHHHHHHHHHH----hCCce--------------
Confidence 6679999999999997643323333322 1122222333345566666666655433 34443
Q ss_pred cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHH
Q 000114 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKD 1516 (2158)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~d 1516 (2158)
.++-+|.-+...+.. +++.++|.||=+-+- +.=...++.|+.+......--..+.+|||. ..+|
T Consensus 264 ----~vv~~~~el~~ai~~------l~~~d~ILVDTaGrs-----~~D~~~i~el~~~~~~~~~i~~~Lvlsat~-K~~d 327 (407)
T COG1419 264 ----EVVYSPKELAEAIEA------LRDCDVILVDTAGRS-----QYDKEKIEELKELIDVSHSIEVYLVLSATT-KYED 327 (407)
T ss_pred ----EEecCHHHHHHHHHH------hhcCCEEEEeCCCCC-----ccCHHHHHHHHHHHhccccceEEEEEecCc-chHH
Confidence 445566666544433 456688888866532 222346677777766554556778899995 5666
Q ss_pred HHHHhc
Q 000114 1517 LGEWIG 1522 (2158)
Q Consensus 1517 l~~wl~ 1522 (2158)
+.+-+.
T Consensus 328 lkei~~ 333 (407)
T COG1419 328 LKEIIK 333 (407)
T ss_pred HHHHHH
Confidence 666554
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.42 Score=62.62 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=29.3
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~ 1407 (2158)
..+++.||+|+|||..+ .++.+.+....++. +++|+. ...+..+..
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~~~~--~v~yi~-~~~~~~~~~ 194 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKNPNA--KVVYVT-SEKFTNDFV 194 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhCCCC--eEEEEE-HHHHHHHHH
Confidence 35999999999999877 44555555422233 677774 445554433
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.84 Score=56.82 Aligned_cols=121 Identities=21% Similarity=0.274 Sum_probs=62.6
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc--cHHHHHHHHHHHHhhcccCCcEEEEEeCCCcc
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP--MKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP--~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~ 590 (2158)
-+++++|+|+|||.+..-.+. .+... +.+++++.. .|+-+.++...+... +|+.+.. +....
T Consensus 142 vi~~~G~~GvGKTTtiakLA~-~l~~~----------g~~V~li~~Dt~R~~a~eqL~~~a~~---lgv~v~~--~~~g~ 205 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAY-YLKKN----------GFSVVIAAGDTFRAGAIEQLEEHAER---LGVKVIK--HKYGA 205 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HHHHc----------CCeEEEecCCcCcHHHHHHHHHHHHH---cCCceec--ccCCC
Confidence 478999999999976543332 23321 235666653 344454444444443 3454432 11111
Q ss_pred CHhhhccccEEEcchhH--HHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEcc
Q 000114 591 TRQQIEETQIIVTTPEK--WDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (2158)
Q Consensus 591 ~~~~~~~~~IiV~TPek--ld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSA 668 (2158)
.|.. ++.+... .....++||||.+++++... ..+ ..+....+...+...++.++|
T Consensus 206 -------------dp~~v~~~ai~~~-----~~~~~DvVLIDTaGr~~~~~-~lm----~eL~~i~~~~~pd~~iLVl~a 262 (336)
T PRK14974 206 -------------DPAAVAYDAIEHA-----KARGIDVVLIDTAGRMHTDA-NLM----DELKKIVRVTKPDLVIFVGDA 262 (336)
T ss_pred -------------CHHHHHHHHHHHH-----HhCCCCEEEEECCCccCCcH-HHH----HHHHHHHHhhCCceEEEeecc
Confidence 1111 1222211 11346899999999876322 112 222222233456677888999
Q ss_pred ccCC
Q 000114 669 TLPN 672 (2158)
Q Consensus 669 Tlpn 672 (2158)
|..+
T Consensus 263 ~~g~ 266 (336)
T PRK14974 263 LAGN 266 (336)
T ss_pred ccch
Confidence 8764
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.68 Score=55.99 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=29.1
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
...++++.||||+|||..+ .+|...+.. ..+ ..++|+. ..++..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~--~~g-~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMR--KKG-VPVLYFP-FVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhh--hcC-ceEEEEE-HHHHHHH
Confidence 3568999999999999777 466665554 112 2566655 3444443
|
|
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.16 Score=70.39 Aligned_cols=109 Identities=22% Similarity=0.191 Sum_probs=74.0
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhh
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~ 573 (2158)
..||+-|.+|+.. ...+++|.|..|||||.+..--+...+..... +.-+|++++.|+..|.++.+++.+.
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v-------~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA---PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENA-------SPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCC-------CHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4689999998863 34579999999999999877666666653211 2347999999999999999999886
Q ss_pred cccCCcEEEEEeCCCccCHhhhccccEEEcchhHH-HHHHhccCC-CccccccceEEeeccc
Q 000114 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGD-RTYTQLVKLLIIDEIH 633 (2158)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekl-d~l~r~~~~-~~~l~~v~lIIiDEaH 633 (2158)
++.. ...+.|+|-..| ..+.|.... ..+.. .+-|+|+.+
T Consensus 73 ~~~~-------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~~--~f~i~d~~d 113 (715)
T TIGR01075 73 LGTS-------------------ARGMWIGTFHGLAHRLLRAHHLDAGLPQ--DFQILDSDD 113 (715)
T ss_pred hccc-------------------ccCcEEEcHHHHHHHHHHHHHHHhCCCC--CCeecCHHH
Confidence 4310 125678998886 334443211 11111 245677764
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.65 Score=59.23 Aligned_cols=24 Identities=33% Similarity=0.650 Sum_probs=18.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAVLTILQQL 536 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l 536 (2158)
.+++|+||+|+|||.++. .+++.+
T Consensus 41 ~~i~I~G~~GtGKT~l~~-~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTK-YVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHH
Confidence 579999999999997764 334444
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.51 Score=58.65 Aligned_cols=46 Identities=24% Similarity=0.319 Sum_probs=30.2
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~ 1407 (2158)
...|+++.||||+|||..+ .+|.+.+.. .+. .++|+ +..+|+.+..
T Consensus 182 ~~~~Lll~G~~GtGKThLa-~aIa~~l~~--~g~--~V~y~-t~~~l~~~l~ 227 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLS-NCIAKELLD--RGK--SVIYR-TADELIEILR 227 (329)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHH--CCC--eEEEE-EHHHHHHHHH
Confidence 4578999999999999876 455555554 122 55554 4455655443
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.74 Score=54.43 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHc---CCCcEEEEccCCCchHHHHH
Q 000114 497 NRVQSRVYKSALS---SADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 497 ~~iQ~~~i~~~l~---~~~nvlv~APTGsGKT~~a~ 529 (2158)
+.....++..+.. ...+++++||+|+|||..+.
T Consensus 25 ~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 25 NAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred cHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHH
Confidence 3444445544433 34579999999999997654
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.15 Score=58.12 Aligned_cols=47 Identities=28% Similarity=0.301 Sum_probs=33.0
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
++|.||+|+|||..++-.+...+..+ .+++|++.. +-..++.+.+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g-----------~~v~~~s~e-~~~~~~~~~~~~ 48 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG-----------EPGLYVTLE-ESPEELIENAES 48 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC-----------CcEEEEECC-CCHHHHHHHHHH
Confidence 78999999999998877666665432 368888653 445666666554
|
A related protein is found in archaea. |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=92.96 E-value=1.1 Score=56.02 Aligned_cols=128 Identities=16% Similarity=0.172 Sum_probs=64.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc--ccHHHHHHHHHHHHhhcccCCcEEEEEeCCCc
Q 000114 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELSGDQT 589 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~ia--P~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~ 589 (2158)
..++++||||+|||..+.......... +.++.++. |.|.-+.++...+.+. .|+.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~-----------GkkVglI~aDt~RiaAvEQLk~yae~---lgipv~------- 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGK-----------KKTVGFITTDHSRIGTVQQLQDYVKT---IGFEVI------- 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHc-----------CCcEEEEecCCcchHHHHHHHHHhhh---cCCcEE-------
Confidence 468899999999997765444433222 12344333 4454444444444432 233322
Q ss_pred cCHhhhccccEEEcchhHH-HHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEcc
Q 000114 590 LTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (2158)
Q Consensus 590 ~~~~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSA 668 (2158)
.+.+|..+ +.+..... ..+.++|+||-+=+.+.. ...++ .+...+....+.-.++.+||
T Consensus 301 -----------v~~d~~~L~~aL~~lk~----~~~~DvVLIDTaGRs~kd-~~lm~----EL~~~lk~~~PdevlLVLsA 360 (436)
T PRK11889 301 -----------AVRDEAAMTRALTYFKE----EARVDYILIDTAGKNYRA-SETVE----EMIETMGQVEPDYICLTLSA 360 (436)
T ss_pred -----------ecCCHHHHHHHHHHHHh----ccCCCEEEEeCccccCcC-HHHHH----HHHHHHhhcCCCeEEEEECC
Confidence 12355554 22222110 124789999988654322 22233 33333333334444566999
Q ss_pred ccCChHHHHHHHh
Q 000114 669 TLPNYEDVALFLR 681 (2158)
Q Consensus 669 Tlpn~~dv~~~l~ 681 (2158)
|.. ..++...+.
T Consensus 361 Ttk-~~d~~~i~~ 372 (436)
T PRK11889 361 SMK-SKDMIEIIT 372 (436)
T ss_pred ccC-hHHHHHHHH
Confidence 854 355555554
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.43 Score=56.33 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=18.3
Q ss_pred CCCcEEEEccCCCchHHHHHHHH
Q 000114 510 SADNILLCAPTGAGKTNVAVLTI 532 (2158)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~i 532 (2158)
...+++++||+|+|||..+....
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~ 59 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAAC 59 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 34579999999999998775443
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.66 Score=56.81 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=17.5
Q ss_pred CcEEEEccCCCchHHHHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAVLTI 532 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~i 532 (2158)
-++++.||+|+|||.+|-...
T Consensus 60 ~~ill~G~pGtGKT~lAr~la 80 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMA 80 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 368999999999999886554
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.33 Score=52.65 Aligned_cols=87 Identities=18% Similarity=0.244 Sum_probs=57.5
Q ss_pred EEecCCCCHHHHHHHHHHHhCCC-ceEEEechhhhhccCCCce--EEEEecccccCCCCC-----------------ccc
Q 000114 798 AIHHAGMTRGDRQLVEDLFGDGH-VQVLVSTATLAWGVNLPAH--TVIIKGTQIYNPEKG-----------------AWT 857 (2158)
Q Consensus 798 ~~hHagl~~~~R~~v~~~F~~g~-i~VLVaT~tla~GVdlP~v--~vVI~~~~~yd~~~g-----------------~~~ 857 (2158)
.++.-+....+...+++.|++.. ..||++|..++.|||+|+. +.||-...||-++.. .+.
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~ 104 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFD 104 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchh
Confidence 34455566666788899998654 3799999889999999985 334444466643321 112
Q ss_pred c----CCHHHHHHhhcccCCCCCCCccEEEEE
Q 000114 858 E----LSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2158)
Q Consensus 858 ~----~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2158)
. .....+.|.+||+=|...| .|..+++
T Consensus 105 ~~~~~~a~~~l~Qa~GR~iR~~~D-~g~i~l~ 135 (141)
T smart00492 105 FVSLPDAMRTLAQCVGRLIRGAND-YGVVVIA 135 (141)
T ss_pred HHHHHHHHHHHHHHhCccccCcCc-eEEEEEE
Confidence 1 2246788999999996544 6655554
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.57 Score=55.66 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=24.2
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP 1398 (2158)
.+++++||+|+|||..+ .++...+.. .+. +++|+..
T Consensus 46 ~~l~l~G~~G~GKTHLl-~a~~~~~~~--~~~--~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLL-QAACLRFEQ--RGE--PAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHh--CCC--cEEEeeH
Confidence 46899999999999774 344444443 123 6777653
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.67 Score=54.66 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=17.7
Q ss_pred CCCcEEEEccCCchhHHHHHH
Q 000114 1356 TDDNVLVAAPTGSGKTICSEF 1376 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l 1376 (2158)
...++++.||+|+|||.++..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 456899999999999988844
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.63 Score=55.06 Aligned_cols=32 Identities=16% Similarity=0.122 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhc---CCCcEEEEccCCchhHHHHH
Q 000114 1344 PIQTQVFTVLYN---TDDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1344 ~iQ~q~~~~l~~---~~~nvli~ApTGSGKTl~a~ 1375 (2158)
.....++..+.. ...+++++||+|+|||..+.
T Consensus 26 ~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 26 AELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred HHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHH
Confidence 334444444432 35679999999999997763
|
|
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.48 Score=56.49 Aligned_cols=49 Identities=27% Similarity=0.375 Sum_probs=35.5
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~ 1411 (2158)
+..++|.||+|||||+.+...+...+.+ +. +++|++ +.+-..+..+.+.
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~---ge--~~lyvs-~ee~~~~i~~~~~ 69 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM---GE--PGIYVA-LEEHPVQVRRNMA 69 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc---CC--cEEEEE-eeCCHHHHHHHHH
Confidence 5679999999999999887777666643 33 788887 4455556655554
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.088 Score=60.38 Aligned_cols=34 Identities=12% Similarity=0.195 Sum_probs=24.7
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.++++|+|+|||..++-.+.+.... +.+++++-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~-----------g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER-----------GMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc-----------CCeEEEEec
Confidence 6889999999998776666555433 236787766
|
|
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.21 Score=68.90 Aligned_cols=86 Identities=20% Similarity=0.148 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.||+-|.+++.. ...+++|.|..|||||.+..--+...+..... ...++++|+.|+..+.++.+++.+.+
T Consensus 1 ~Ln~~Q~~av~~---~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~-------~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 1 KLNPQQQEAVEY---VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGY-------KARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCC-------CHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 379999998863 34579999999999999988877777754211 23479999999999999999998765
Q ss_pred ccCCcEEEEEeCCCccCHhhhccccEEEcchhHH
Q 000114 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW 608 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekl 608 (2158)
+.. ....+-|+|-..|
T Consensus 71 ~~~------------------~~~~v~v~TfHs~ 86 (664)
T TIGR01074 71 GKG------------------EARGLTISTFHTL 86 (664)
T ss_pred Ccc------------------ccCCeEEEeHHHH
Confidence 311 1245788998886
|
Designed to identify rep members of the uvrD/rep subfamily. |
| >TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.48 Score=61.09 Aligned_cols=136 Identities=13% Similarity=0.227 Sum_probs=80.4
Q ss_pred EEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHH-HHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhccc-
Q 000114 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEA-LAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE- 1437 (2158)
Q Consensus 1360 vli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~ra-La~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~- 1437 (2158)
.++.|..|||||.++.+.++..+....++. +++++.|+.. |-.-++..+...+... |+....-..+.+.......
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~--~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~~i~~~~~ 80 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQ--NILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSMEIKILNT 80 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCc--EEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCccEEEecCC
Confidence 678899999999999888887777631334 8999999987 6666677777555443 3321111111111111212
Q ss_pred CCcEEEeCH-HHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC
Q 000114 1438 KGQIIISTP-EKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1438 ~~~IIV~TP-e~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n 1513 (2158)
...|++..- +....+ .....+.++.+|||..+.. ..++.++.|++. +...+.+.+|.++..
T Consensus 81 g~~i~f~g~~d~~~~i-------k~~~~~~~~~idEa~~~~~---~~~~~l~~rlr~-----~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 81 GKKFIFKGLNDKPNKL-------KSGAGIAIIWFEEASQLTF---EDIKELIPRLRE-----TGGKKFIIFSSNPES 142 (396)
T ss_pred CeEEEeecccCChhHh-------hCcceeeeehhhhhhhcCH---HHHHHHHHHhhc-----cCCccEEEEEcCcCC
Confidence 235666553 222211 1234479999999998842 367777777543 112224667777654
|
This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354. |
| >COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.24 Score=60.06 Aligned_cols=60 Identities=22% Similarity=0.320 Sum_probs=47.4
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaL 562 (2158)
-.|..+++-|...+..+.....|+|+|+.||||||. +|+.+...... .. ++|.+--|.+|
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT-----lLNal~~~i~~------~e-RvItiEDtaEL 212 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT-----LLNALSGFIDS------DE-RVITIEDTAEL 212 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH-----HHHHHHhcCCC------cc-cEEEEeehhhh
Confidence 458899999999999999999999999999999995 34555443322 22 88988888777
|
|
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.66 Score=55.41 Aligned_cols=139 Identities=23% Similarity=0.310 Sum_probs=72.1
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEc---ccHHHHHHHHHHHHHHhcCCCCcEEE-EEcCCcch
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA---PLEALAKERYRDWEIKFGQGLGMRVV-ELTGETAM 1431 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~Ia---P~raLa~q~~~~~~~~f~~~~g~~v~-~ltG~~~~ 1431 (2158)
.++-++|+|++|+|||..+.-.+.+...+. +. +++|++ |..+++..... ... ++... ...|....
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~--~vly~s~E~~~~~~~~r~~~----~~~---~~~~~~~~~~~~~~ 80 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQ--GK--PVLFFSLEMSKEQLLQRLLA----SES---GISLSKLRTGSLSD 80 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CC--ceEEEeCCCCHHHHHHHHHH----Hhc---CCCHHHHhcCCCCH
Confidence 456789999999999987755555544431 22 678877 33344433221 111 11110 01111111
Q ss_pred -h-------hhcccCCcEEE-----eCHHHHHHHHhhhhccccccceeEEEecccccccCCC--C---ChHHHHHHHHHH
Q 000114 1432 -D-------LKLLEKGQIII-----STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG--G---PVLEVIVSRMRY 1493 (2158)
Q Consensus 1432 -~-------~~~l~~~~IIV-----~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~--g---~~~e~~isrl~~ 1493 (2158)
. ...+....+.| .|++.+...++..... .++++||||=++.+.... . ..+..++.+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~---~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~ 157 (242)
T cd00984 81 EDWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKE---HGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKL 157 (242)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHh---cCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHH
Confidence 0 11122234444 2455555544443221 278999999999774321 1 223456666776
Q ss_pred HHhhcCCCceEEEeccC
Q 000114 1494 IASQVENKIRIVALSTS 1510 (2158)
Q Consensus 1494 i~~~~~~~~riV~lSAT 1510 (2158)
++.+. ++.++++|-.
T Consensus 158 la~~~--~~~ii~~~q~ 172 (242)
T cd00984 158 LAKEL--NVPVIALSQL 172 (242)
T ss_pred HHHHh--CCeEEEeccc
Confidence 66543 5667776643
|
The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. |
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.92 Score=58.52 Aligned_cols=38 Identities=29% Similarity=0.398 Sum_probs=25.2
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEc
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~Ia 1397 (2158)
..|++|.||+|+|||.+. ..+++.+.... .....+|+-
T Consensus 55 ~~~~lI~G~~GtGKT~l~-~~v~~~l~~~~--~~~~~v~in 92 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTV-KKVFEELEEIA--VKVVYVYIN 92 (394)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHHhc--CCcEEEEEE
Confidence 367999999999999876 34444444421 123667763
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.27 Score=52.33 Aligned_cols=17 Identities=35% Similarity=0.663 Sum_probs=14.3
Q ss_pred EEEEccCCchhHHHHHH
Q 000114 1360 VLVAAPTGSGKTICSEF 1376 (2158)
Q Consensus 1360 vli~ApTGSGKTl~a~l 1376 (2158)
+++.||+|+|||..+..
T Consensus 1 ill~G~~G~GKT~l~~~ 17 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARA 17 (132)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred CEEECcCCCCeeHHHHH
Confidence 68999999999987733
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.57 Score=56.71 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=17.1
Q ss_pred CcEEEEccCCchhHHHHHHH
Q 000114 1358 DNVLVAAPTGSGKTICSEFA 1377 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~ 1377 (2158)
.|+++.||+|+|||.++...
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 47999999999999988544
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.22 Score=61.62 Aligned_cols=59 Identities=20% Similarity=0.355 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHH
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaL 562 (2158)
.+++.|.+.+..++..+.|++++||||||||. ++-+++..+.... ...++++|-.+.+|
T Consensus 132 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~~--------~~~rivtIEd~~El 190 (319)
T PRK13894 132 IMTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQD--------PTERVFIIEDTGEI 190 (319)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhcC--------CCceEEEEcCCCcc
Confidence 46788999999999999999999999999994 4455555442211 22378888887776
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.83 Score=54.27 Aligned_cols=17 Identities=41% Similarity=0.759 Sum_probs=14.4
Q ss_pred cEEEEccCCCchHHHHH
Q 000114 513 NILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~ 529 (2158)
.++++||+|+|||-.+.
T Consensus 43 ~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 43 WLYLSGPAGTGKTHLAL 59 (233)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48999999999996554
|
|
| >TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.44 Score=61.46 Aligned_cols=136 Identities=13% Similarity=0.201 Sum_probs=83.0
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH-HHHHHHHHHHhhcccCCcEEEEEeCCCccCH
Q 000114 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA-LVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (2158)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ka-La~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~ 592 (2158)
.+++|..|||||.++.+.++..+.... .+.+++++.|+.. |..-++..+...+..+|+....-..+....-
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~--------~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~i 75 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINK--------KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSMEI 75 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcC--------CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccEE
Confidence 678999999999999888887777641 2347999999887 7777788888777766654222222221110
Q ss_pred hhhc-cccEEEcch-hHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000114 593 QQIE-ETQIIVTTP-EKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2158)
Q Consensus 593 ~~~~-~~~IiV~TP-ekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATl 670 (2158)
.... +..|++..- +..+.+. ....+.++.+|||..+.. ..++.++.|++ . +...+.+.+|.|+
T Consensus 76 ~~~~~g~~i~f~g~~d~~~~ik-------~~~~~~~~~idEa~~~~~---~~~~~l~~rlr----~-~~~~~~i~~t~NP 140 (396)
T TIGR01547 76 KILNTGKKFIFKGLNDKPNKLK-------SGAGIAIIWFEEASQLTF---EDIKELIPRLR----E-TGGKKFIIFSSNP 140 (396)
T ss_pred EecCCCeEEEeecccCChhHhh-------CcceeeeehhhhhhhcCH---HHHHHHHHHhh----c-cCCccEEEEEcCc
Confidence 1112 345666443 3322222 122368999999998743 36777776642 1 1122247888886
Q ss_pred CC
Q 000114 671 PN 672 (2158)
Q Consensus 671 pn 672 (2158)
+.
T Consensus 141 ~~ 142 (396)
T TIGR01547 141 ES 142 (396)
T ss_pred CC
Confidence 54
|
This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354. |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.29 Score=55.86 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=31.7
Q ss_pred cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHH
Q 000114 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~ 1411 (2158)
.++|.||+|+|||..+.-.+...... +. +++|++. .+-..+..+.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~---g~--~v~~~s~-e~~~~~~~~~~~ 47 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR---GE--PGLYVTL-EESPEELIENAE 47 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC---CC--cEEEEEC-CCCHHHHHHHHH
Confidence 37899999999999886655555433 33 6788864 344555555554
|
A related protein is found in archaea. |
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.61 Score=60.32 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=28.5
Q ss_pred cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
.+++.||+|+|||..+ .++.+.+....++. +++|+.. ..+..+
T Consensus 138 ~l~l~G~~G~GKThL~-~ai~~~l~~~~~~~--~v~yi~~-~~~~~~ 180 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL-HAIGNEILENNPNA--KVVYVSS-EKFTND 180 (405)
T ss_pred eEEEECCCCCcHHHHH-HHHHHHHHHhCCCC--cEEEEEH-HHHHHH
Confidence 5889999999999887 55666665522233 7788753 344433
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.4 Score=59.00 Aligned_cols=20 Identities=25% Similarity=0.552 Sum_probs=17.2
Q ss_pred CcEEEEccCCchhHHHHHHH
Q 000114 1358 DNVLVAAPTGSGKTICSEFA 1377 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~ 1377 (2158)
.+.|+.+|+|+|||.+|.+-
T Consensus 49 ~SmIl~GPPG~GKTTlA~li 68 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLI 68 (436)
T ss_pred ceeEEECCCCCCHHHHHHHH
Confidence 47999999999999988553
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.18 E-value=0.67 Score=58.49 Aligned_cols=134 Identities=20% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHhcCC--CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEE-cccHHHHHHHHHHHHHHhcCCCCcEEE
Q 000114 1347 TQVFTVLYNTD--DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI-APLEALAKERYRDWEIKFGQGLGMRVV 1423 (2158)
Q Consensus 1347 ~q~~~~l~~~~--~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~I-aP~raLa~q~~~~~~~~f~~~~g~~v~ 1423 (2158)
..+|..++.+. .|++|-||||+|||.+. .-+++.+....+.. -++|| |..-.=-.|++..+...++
T Consensus 30 ~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~-~~v~~~l~~~~~~~--~~~yINc~~~~t~~~i~~~i~~~~~-------- 98 (366)
T COG1474 30 ASFLAPALRGERPSNIIIYGPTGTGKTATV-KFVMEELEESSANV--EVVYINCLELRTPYQVLSKILNKLG-------- 98 (366)
T ss_pred HHHHHHHhcCCCCccEEEECCCCCCHhHHH-HHHHHHHHhhhccC--ceEEEeeeeCCCHHHHHHHHHHHcC--------
Q ss_pred EEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCce
Q 000114 1424 ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIR 1503 (2158)
Q Consensus 1424 ~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~r 1503 (2158)
.+.-+---....+-+-|.........-+||+||++.|.+..+ +.++.-++.-... ...+-
T Consensus 99 ----------------~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---~~LY~L~r~~~~~-~~~v~ 158 (366)
T COG1474 99 ----------------KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---EVLYSLLRAPGEN-KVKVS 158 (366)
T ss_pred ----------------CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---hHHHHHHhhcccc-ceeEE
Q ss_pred EEEeccCC
Q 000114 1504 IVALSTSL 1511 (2158)
Q Consensus 1504 iV~lSATl 1511 (2158)
+|+.+.++
T Consensus 159 vi~i~n~~ 166 (366)
T COG1474 159 IIAVSNDD 166 (366)
T ss_pred EEEEeccH
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=92.16 E-value=1.7 Score=55.39 Aligned_cols=41 Identities=27% Similarity=0.418 Sum_probs=25.5
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcC--CCceEEEEEcc
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASE--TGVMRAVYIAP 1398 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~--~~~~~~v~IaP 1398 (2158)
..+++|.||+|+|||.++ -.+++.+..... +..+.++|+..
T Consensus 40 ~~~i~I~G~~GtGKT~l~-~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVT-KYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHHHHHhhccCCceEEEEEEC
Confidence 357999999999999776 444555543211 11135666553
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=92.15 E-value=2 Score=55.61 Aligned_cols=126 Identities=17% Similarity=0.208 Sum_probs=64.9
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEE--cccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYI--APLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK 1434 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~I--aP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~ 1434 (2158)
+..+++.+|||+|||....--+...... ..+. ++.+| -|.|.-+.++...|.+.+ |+.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~-~~g~--~V~li~~D~~r~~a~eqL~~~a~~~----~vp~~----------- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALL-YGKK--KVALITLDTYRIGAVEQLKTYAKIM----GIPVE----------- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCC--eEEEEECCccHHHHHHHHHHHHHHh----CCceE-----------
Confidence 4578999999999997764333222211 1122 44333 355655556666666433 23221
Q ss_pred cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHh-hcCCCceEEEeccCCCC
Q 000114 1435 LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIAS-QVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~-~~~~~~riV~lSATl~n 1513 (2158)
.+.+|+.+...++. +.+.++||||-+-....+. ..+..+..+.. .......++.+|||..
T Consensus 283 -------~~~~~~~l~~~l~~------~~~~DlVlIDt~G~~~~d~-----~~~~~L~~ll~~~~~~~~~~LVl~a~~~- 343 (424)
T PRK05703 283 -------VVYDPKELAKALEQ------LRDCDVILIDTAGRSQRDK-----RLIEELKALIEFSGEPIDVYLVLSATTK- 343 (424)
T ss_pred -------ccCCHHhHHHHHHH------hCCCCEEEEeCCCCCCCCH-----HHHHHHHHHHhccCCCCeEEEEEECCCC-
Confidence 22344444444433 3457999999986543211 12233333333 1122345778899864
Q ss_pred hHHHHH
Q 000114 1514 AKDLGE 1519 (2158)
Q Consensus 1514 ~~dl~~ 1519 (2158)
..++.+
T Consensus 344 ~~~l~~ 349 (424)
T PRK05703 344 YEDLKD 349 (424)
T ss_pred HHHHHH
Confidence 344443
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.71 Score=60.08 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=27.0
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP 1398 (2158)
..+++.||+|+|||..+ .++.+.+....++. +++|+..
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~~~~~--~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQNEPDL--RVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHhCCCC--eEEEEEH
Confidence 36999999999999877 45555555533333 7888764
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.73 Score=57.42 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHcCCC---cEEEEccCCCchHHHHHHHH
Q 000114 496 LNRVQSRVYKSALSSAD---NILLCAPTGAGKTNVAVLTI 532 (2158)
Q Consensus 496 l~~iQ~~~i~~~l~~~~---nvlv~APTGsGKT~~a~l~i 532 (2158)
+.|||...+..++..+. -+|++||.|.|||..+...+
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A 43 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLA 43 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHH
Confidence 47888888888887643 47999999999998775443
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.76 Score=55.82 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHh---c-CCCcEEEEccCCchhHHHHHH
Q 000114 1341 HFNPIQTQVFTVLY---N-TDDNVLVAAPTGSGKTICSEF 1376 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~---~-~~~nvli~ApTGSGKTl~a~l 1376 (2158)
..++.+.+++..+- . +...+++.||+|+|||..+..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~ 62 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRN 62 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 45666777776653 2 344689999999999987743
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.45 Score=63.03 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=21.2
Q ss_pred HHHHHHHcCC---CcEEEEccCCCchHHHHHHHH
Q 000114 502 RVYKSALSSA---DNILLCAPTGAGKTNVAVLTI 532 (2158)
Q Consensus 502 ~~i~~~l~~~---~nvlv~APTGsGKT~~a~l~i 532 (2158)
+.+..++.++ ..+|++||.|+|||.+|.+.+
T Consensus 25 ~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLA 58 (702)
T PRK14960 25 RALSSALERGRLHHAYLFTGTRGVGKTTIARILA 58 (702)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3444455443 346999999999998875443
|
|
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.3 Score=67.75 Aligned_cols=109 Identities=22% Similarity=0.156 Sum_probs=72.2
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhh-cCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA-SETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~-~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
..+||-|.+|+.. ...+++|.|..|||||.+..--+...+... -+.. ++++|+-|+..|.++.+++.+.++..
T Consensus 8 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~--~IL~lTFT~kAA~Em~~Rl~~~~~~~- 81 (721)
T PRK11773 8 DSLNDKQREAVAA---PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPY--SIMAVTFTNKAAAEMRHRIEQLLGTS- 81 (721)
T ss_pred HhcCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChh--HeEeeeccHHHHHHHHHHHHHHhccC-
Confidence 4699999999864 356799999999999988765555555431 1233 79999999999999988887544310
Q ss_pred CcEEEEEcCCcchhhhcccCCcEEEeCHHHHHH-HHhhhhccccccceeEEEecccc
Q 000114 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDA-LSRRWKQRKYVQQVSLFIIDELH 1474 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~-l~r~~~~~~~l~~v~llIiDEaH 1474 (2158)
...+.|+|...|.. +++.......+. -.+-|+|+.+
T Consensus 82 -------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d 118 (721)
T PRK11773 82 -------------------QGGMWVGTFHGLAHRLLRAHWQDANLP-QDFQILDSDD 118 (721)
T ss_pred -------------------CCCCEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHH
Confidence 12477899887743 444422111111 1234677665
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=92.01 E-value=1.2 Score=54.34 Aligned_cols=143 Identities=20% Similarity=0.197 Sum_probs=70.7
Q ss_pred cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEE---cCCcch
Q 000114 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVEL---TGETAM 1431 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~l---tG~~~~ 1431 (2158)
..+..++|+||||+|||..+...+.+...+ .+. +++|+.- -.-..+...++...+. +..+... .+....
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--~g~--~vl~iS~-E~~~~~~~~r~~~~~~---~~~~~~~~~~~~~~~~ 99 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQ--HGV--RVGTISL-EEPVVRTARRLLGQYA---GKRLHLPDTVFIYTLE 99 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHh--cCc--eEEEEEc-ccCHHHHHHHHHHHHh---CCCcccCCccccccHH
Confidence 346679999999999998775444443332 122 6777753 2233444444443322 2221110 000000
Q ss_pred h----hhcc-cCCcEEEe------CHHHHHHHHhhhhccccccceeEEEecccccccCCC---C---ChHHHHHHHHHHH
Q 000114 1432 D----LKLL-EKGQIIIS------TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG---G---PVLEVIVSRMRYI 1494 (2158)
Q Consensus 1432 ~----~~~l-~~~~IIV~------TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~---g---~~~e~~isrl~~i 1494 (2158)
. ...+ ....+.+- |++.+...++.... -..+++||||.++.+.... . ..+..++..++.+
T Consensus 100 ~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~---~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~l 176 (271)
T cd01122 100 EFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAV---SHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGF 176 (271)
T ss_pred HHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHh---cCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHH
Confidence 0 0111 11223221 44444444443221 2368999999999876432 1 1234555566666
Q ss_pred HhhcCCCceEEEeccC
Q 000114 1495 ASQVENKIRIVALSTS 1510 (2158)
Q Consensus 1495 ~~~~~~~~riV~lSAT 1510 (2158)
+.. .++.++++|-+
T Consensus 177 a~~--~~vtvll~sq~ 190 (271)
T cd01122 177 ATE--HGIHITLVSHL 190 (271)
T ss_pred HHH--hCCEEEEEecc
Confidence 553 35666666543
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.3 Score=60.24 Aligned_cols=59 Identities=24% Similarity=0.406 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHH
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaL 562 (2158)
.+++.|.+.+..++..+.|+||+||||||||... -+++..+.... ..-+++.+-...+|
T Consensus 128 ~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~--------~~~rivtiEd~~El 186 (323)
T PRK13833 128 IMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASA--------PEDRLVILEDTAEI 186 (323)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCC--------CCceEEEecCCccc
Confidence 4788999999999999999999999999999754 44555543211 12377877777776
|
|
| >PRK05748 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.65 Score=60.81 Aligned_cols=144 Identities=26% Similarity=0.278 Sum_probs=78.9
Q ss_pred cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEE-EEcCCcchh-
Q 000114 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV-ELTGETAMD- 1432 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~-~ltG~~~~~- 1432 (2158)
..++-++|+|+||.|||..++--+.+...+ .+. .++|+ ....-..|+..++-..++.. ... ...|.....
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a~~--~g~--~v~~f-SlEms~~~l~~R~l~~~~~v---~~~~i~~~~l~~~e 272 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVATK--TDK--NVAIF-SLEMGAESLVMRMLCAEGNI---DAQRLRTGQLTDDD 272 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHHHh--CCC--eEEEE-eCCCCHHHHHHHHHHHhcCC---CHHHhhcCCCCHHH
Confidence 346669999999999998775444433322 122 45555 33344455555554333321 111 112322221
Q ss_pred -------hhcccCCcEEEe-----CHHHHHHHHhhhhccccccceeEEEecccccccCCC--C----ChHHHHHHHHHHH
Q 000114 1433 -------LKLLEKGQIIIS-----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG--G----PVLEVIVSRMRYI 1494 (2158)
Q Consensus 1433 -------~~~l~~~~IIV~-----TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~--g----~~~e~~isrl~~i 1494 (2158)
...+.+.++.|. |++.+....+++.... .++++||||=+|.+.... + ..+..+...++.+
T Consensus 273 ~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~--~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~l 350 (448)
T PRK05748 273 WPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEH--GGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKAL 350 (448)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhc--CCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 113334456553 5566655555543321 268999999999885321 1 1234566667776
Q ss_pred HhhcCCCceEEEeccC
Q 000114 1495 ASQVENKIRIVALSTS 1510 (2158)
Q Consensus 1495 ~~~~~~~~riV~lSAT 1510 (2158)
+..+ ++.+|++|-.
T Consensus 351 Ake~--~i~vi~lsQl 364 (448)
T PRK05748 351 AKEL--KVPVIALSQL 364 (448)
T ss_pred HHHh--CCeEEEeccc
Confidence 6543 6888888765
|
|
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.29 Score=53.24 Aligned_cols=87 Identities=17% Similarity=0.253 Sum_probs=58.1
Q ss_pred EEecCCCCHHHHHHHHHHHHcCCc---eEEEecCc--cccccCCCc---cEEEEecceeecCCC----------------
Q 000114 1637 GYLHEGLNKTDQEVVSALFEAGKI---KVCVMSSS--MCWGVPLTA---HLVVVMGTQYYDGQE---------------- 1692 (2158)
Q Consensus 1637 ~~~H~~l~~~dR~~v~~~F~~g~i---~VLVaT~~--la~Gvdlp~---~~vVI~gt~~yd~~~---------------- 1692 (2158)
.++..+....+...+++.|++..- .||+|+.. +..|||+|+ ..|||.|.++-.+..
T Consensus 22 ~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~ 101 (142)
T smart00491 22 PVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGI 101 (142)
T ss_pred eEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCC
Confidence 344444444455788888987543 69998887 999999996 467787877643320
Q ss_pred C----cCcCCCHHHHHHhhccCCCCCCCCceEEEEE
Q 000114 1693 N----AHTDYPVTDLLQMMGHASRPLLDNSGKCVIL 1724 (2158)
Q Consensus 1693 ~----~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil 1724 (2158)
+ .+.+.....+.|.+||+-|.. +..|..+++
T Consensus 102 ~~~~~~~~~~a~~~~~Qa~GR~iR~~-~D~g~i~l~ 136 (142)
T smart00491 102 RPFDEVYLFDAMRALAQAIGRAIRHK-NDYGVVVLL 136 (142)
T ss_pred CcHHHHHHHHHHHHHHHHhCccccCc-cceEEEEEE
Confidence 0 012223567789999999976 556755554
|
|
| >PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.34 Score=64.74 Aligned_cols=168 Identities=14% Similarity=0.180 Sum_probs=101.2
Q ss_pred CCCCHHHHHHHHHHhcCC-CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH-HHHHHHhcCC
Q 000114 1340 KHFNPIQTQVFTVLYNTD-DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY-RDWEIKFGQG 1417 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~-~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~-~~~~~~f~~~ 1417 (2158)
...+|+|.+.+.++-... +.|.++.++-+|||.+.+..+...+.. .+ + .++|+.||..++.... .++.-.+...
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~-~P-~--~~l~v~Pt~~~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ-DP-G--PMLYVQPTDDAAKDFSKERLDPMIRAS 90 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe-CC-C--CEEEEEEcHHHHHHHHHHHHHHHHHhC
Confidence 478999999999985533 469999999999999776655544444 23 3 6899999999998876 3444333321
Q ss_pred CCcE--EEE---EcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC---CCCChHHHHHH
Q 000114 1418 LGMR--VVE---LTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG---QGGPVLEVIVS 1489 (2158)
Q Consensus 1418 ~g~~--v~~---ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~---~~g~~~e~~is 1489 (2158)
..++ +.. -.++.+...+.+..+.+.++.-..- ....-..++++++||++.... ..|..++....
T Consensus 91 p~l~~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~--------~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~ 162 (557)
T PF05876_consen 91 PVLRRKLSPSKSRDSGNTILYKRFPGGFLYLVGANSP--------SNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEK 162 (557)
T ss_pred HHHHHHhCchhhcccCCchhheecCCCEEEEEeCCCC--------cccccCCcCEEEEechhhccccCccCCCHHHHHHH
Confidence 1111 100 1122333345555566666542211 111234688999999998843 35788888888
Q ss_pred HHHHHHhhcCCCceEEEecc-CCCChHHHHHHhcc
Q 000114 1490 RMRYIASQVENKIRIVALST-SLANAKDLGEWIGA 1523 (2158)
Q Consensus 1490 rl~~i~~~~~~~~riV~lSA-Tl~n~~dl~~wl~~ 1523 (2158)
|.... ....+++..|. |......+......
T Consensus 163 R~~tf----~~~~K~~~~STPt~~~~~~I~~~~~~ 193 (557)
T PF05876_consen 163 RTKTF----GSNRKILRISTPTIEGTSRIERLYEE 193 (557)
T ss_pred HHhhh----ccCcEEEEeCCCCCCCCCHHHHHHHh
Confidence 87755 22445555554 44333344444333
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities []. |
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.68 Score=60.29 Aligned_cols=30 Identities=30% Similarity=0.519 Sum_probs=21.1
Q ss_pred HHHHHHcCC---CcEEEEccCCCchHHHHHHHH
Q 000114 503 VYKSALSSA---DNILLCAPTGAGKTNVAVLTI 532 (2158)
Q Consensus 503 ~i~~~l~~~---~nvlv~APTGsGKT~~a~l~i 532 (2158)
.+..++..+ +.+|++||.|+|||.+|.+.+
T Consensus 24 ~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilA 56 (491)
T PRK14964 24 ILRNAFTLNKIPQSILLVGASGVGKTTCARIIS 56 (491)
T ss_pred HHHHHHHcCCCCceEEEECCCCccHHHHHHHHH
Confidence 444444443 358999999999998876543
|
|
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.94 Score=53.46 Aligned_cols=142 Identities=20% Similarity=0.231 Sum_probs=72.0
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.++|.. +... -+..+.-++|.|++|+|||..++-.+.+...+ +. +++|++--- =..|+.+++. .++ +
T Consensus 50 ~~~p~~-~l~G-Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge--~vlyfSlEe-s~~~i~~R~~-s~g----~ 116 (237)
T PRK05973 50 ATTPAE-ELFS-QLKPGDLVLLGARPGHGKTLLGLELAVEAMKS---GR--TGVFFTLEY-TEQDVRDRLR-ALG----A 116 (237)
T ss_pred CCCCHH-HhcC-CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CC--eEEEEEEeC-CHHHHHHHHH-HcC----C
Confidence 456622 2222 23446679999999999999886666555433 33 677875332 2455566555 332 1
Q ss_pred EEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC-CCChHHHHHHHHHHHHhhcC
Q 000114 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQVE 1499 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~-~g~~~e~~isrl~~i~~~~~ 1499 (2158)
....+ ...-.+....+...+.+.++... -.+.++||||=+..+... ..+.+..++..++.+.+.
T Consensus 117 d~~~~----------~~~~~~d~~d~~~~~~ii~~l~~---~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~-- 181 (237)
T PRK05973 117 DRAQF----------ADLFEFDTSDAICADYIIARLAS---APRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARE-- 181 (237)
T ss_pred ChHHh----------ccceEeecCCCCCHHHHHHHHHH---hhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHh--
Confidence 10000 00000111101111122222221 124689999999987432 233444455556555543
Q ss_pred CCceEEEeccC
Q 000114 1500 NKIRIVALSTS 1510 (2158)
Q Consensus 1500 ~~~riV~lSAT 1510 (2158)
.++.+|++|-.
T Consensus 182 ~gitvIl~sQl 192 (237)
T PRK05973 182 RGLIIVFISQI 192 (237)
T ss_pred CCCeEEEEecC
Confidence 46677776543
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.57 Score=56.65 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=28.5
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~ 566 (2158)
..++++.||||+|||..+. +|.+.+... .+..++|+.. .++..++
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~~---------~g~~v~y~~~-~~l~~~l 161 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMRK---------KGVPVLYFPF-VEGFGDL 161 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhhh---------cCceEEEEEH-HHHHHHH
Confidence 5679999999999997663 455554432 1236777653 4444443
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=91.62 E-value=1.2 Score=58.52 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=17.3
Q ss_pred CcEEEEccCCCchHHHHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAVLTI 532 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~i 532 (2158)
..+|++||.|+|||.++.+.+
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 369999999999998875543
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.68 Score=61.96 Aligned_cols=40 Identities=25% Similarity=0.518 Sum_probs=24.9
Q ss_pred ccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEc
Q 000114 621 TQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (2158)
Q Consensus 621 l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lS 667 (2158)
....+++||||+|.|... .. ..+++.++..+..+.+|+.+
T Consensus 117 ~gk~KVIIIDEad~Ls~~---A~----NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKS---AF----NAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHH---HH----HHHHHHHHhCCCCcEEEEEe
Confidence 456789999999987531 12 23444455555667766654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2158 | ||||
| 4f91_B | 1724 | Brr2 Helicase Region Length = 1724 | 0.0 | ||
| 4f92_B | 1724 | Brr2 Helicase Region S1087l Length = 1724 | 0.0 | ||
| 2q0z_X | 339 | Crystal Structure Of Q9p172SEC63 FROM HOMO SAPIENS. | 4e-91 | ||
| 3im1_A | 328 | Structure Of The C-Terminal Sec63 Unit Of Yeast Brr | 3e-53 | ||
| 3hib_A | 318 | Crystal Structure Of The Second Sec63 Domain Of Yea | 5e-50 | ||
| 2va8_A | 715 | Dna Repair Helicase Hel308 Length = 715 | 4e-38 | ||
| 2p6r_A | 702 | Crystal Structure Of Superfamily 2 Helicase Hel308 | 1e-34 | ||
| 2p6r_A | 702 | Crystal Structure Of Superfamily 2 Helicase Hel308 | 2e-34 | ||
| 2zj2_A | 720 | Archaeal Dna Helicase Hjm Apo State In Form 1 Lengt | 2e-33 | ||
| 2xgj_A | 1010 | Structure Of Mtr4, A Dexh Helicase Involved In Nucl | 3e-17 | ||
| 3l9o_A | 1108 | Crystal Structure Of Mtr4, A Co-Factor Of The Nucle | 4e-17 | ||
| 4a4z_A | 997 | Crystal Structure Of The S. Cerevisiae Dexh Helicas | 3e-14 | ||
| 4a4z_A | 997 | Crystal Structure Of The S. Cerevisiae Dexh Helicas | 6e-13 | ||
| 4a4z_A | 997 | Crystal Structure Of The S. Cerevisiae Dexh Helicas | 5e-06 | ||
| 3dkp_A | 245 | Human Dead-Box Rna-Helicase Ddx52, Conserved Domain | 1e-06 |
| >pdb|4F91|B Chain B, Brr2 Helicase Region Length = 1724 | Back alignment and structure |
|
| >pdb|4F92|B Chain B, Brr2 Helicase Region S1087l Length = 1724 | Back alignment and structure |
|
| >pdb|2Q0Z|X Chain X, Crystal Structure Of Q9p172SEC63 FROM HOMO SAPIENS. Northeast Structural Genomics Target Hr1979 Length = 339 | Back alignment and structure |
|
| >pdb|3IM1|A Chain A, Structure Of The C-Terminal Sec63 Unit Of Yeast Brr2, P212121 Form Length = 328 | Back alignment and structure |
|
| >pdb|3HIB|A Chain A, Crystal Structure Of The Second Sec63 Domain Of Yeast Brr2 Length = 318 | Back alignment and structure |
|
| >pdb|2VA8|A Chain A, Dna Repair Helicase Hel308 Length = 715 | Back alignment and structure |
|
| >pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In Complex With Unwound Dna Length = 702 | Back alignment and structure |
|
| >pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In Complex With Unwound Dna Length = 702 | Back alignment and structure |
|
| >pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1 Length = 720 | Back alignment and structure |
|
| >pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna Processing And Surveillance Length = 1010 | Back alignment and structure |
|
| >pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear Exosome Length = 1108 | Back alignment and structure |
|
| >pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997 | Back alignment and structure |
|
| >pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997 | Back alignment and structure |
|
| >pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997 | Back alignment and structure |
|
| >pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In Complex With Adp Length = 245 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 716 bits (1849), Expect = 0.0
Identities = 173/770 (22%), Positives = 303/770 (39%), Gaps = 90/770 (11%)
Query: 477 IKISE--MPEWAQPAFK--GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTI 532
+++ E + E + K G+ Q+ KS + N L+ PT +GKT +A + +
Sbjct: 1 MRVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAM 60
Query: 533 LQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592
+ ++ K VY+ P+KAL E + ++V +GD
Sbjct: 61 VHRILTQG----------GKAVYIVPLKALAEEKFQEFQ-DWEKIGLRVAMATGDYDSKD 109
Query: 593 QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTV 651
+ + + II+ T EK+D + R ++ + VK+L+ DEIHL+ +RG LE I+A
Sbjct: 110 EWLGKYDIIIATAEKFDSLLRHG--SSWIKDVKILVADEIHLIGSRDRGATLEVILAHM- 166
Query: 652 RQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG----I 707
+++GLSAT+ N E++A +L L + +RPV L +
Sbjct: 167 ------LGKAQIIGLSATIGNPEELAEWLNAEL------IVSDWRPVKLRRGVFYQGFVT 214
Query: 708 QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767
+ RF +L Y+ + K LIFV+ R++ + A + T
Sbjct: 215 WEDGSIDRFSSWEELVYDAI---RKKKGALIFVNMRRKAERVALELSKKVKSLLTK---- 267
Query: 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST 827
E E+ S + + L + G A HHAG+ R +R LVE+ F G ++ +V+T
Sbjct: 268 PEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVAT 327
Query: 828 ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887
TL+ G+N PA VII+ Y+ + +++ QMLGRAGRP+YD GEGII++
Sbjct: 328 PTLSAGINTPAFRVIIRDIWRYSD--FGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVST 385
Query: 888 HSELR--YYLSLMNQQLPIESQFV--SKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIR 943
+ R + + + SQ S L Q+ A I +E +I T+
Sbjct: 386 SDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAY- 444
Query: 944 MLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIA 1003
+ Y L + + L N ++ + LG
Sbjct: 445 --QRKDTYSL---------------EEKIRNILYFLLENEFIEI-SLEDKIRPLSLGIRT 486
Query: 1004 SYYYISHGTISTYNEHLKPTMGDI---ELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVP 1060
+ YI T + + ++ + D + L SL+ + + E L +
Sbjct: 487 AKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFK 546
Query: 1061 -------------IPVKESLEEPSAKINVLLQAYISQLKLEGLS-----LTSDMVFITQS 1102
P E + K ++L A+I+++ + D+ I ++
Sbjct: 547 DRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVET 606
Query: 1103 AGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 1162
A L+ +L EI G ++ + L V + PL Q + L
Sbjct: 607 AEWLVYSLKEIAKVLGAYEIVDYLETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSG 666
Query: 1163 FAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTV 1212
F D+S EL++ +G + + +F + +P T+
Sbjct: 667 F--RSIEDISQARPEELLKIEGIGVKTVEAIFKFLGKNVKISEKPRKSTL 714
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 582 bits (1503), Expect = 0.0
Identities = 160/763 (20%), Positives = 299/763 (39%), Gaps = 87/763 (11%)
Query: 1314 TELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTIC 1373
+ L + + L+ G + F P Q + N L++ PT SGKT+
Sbjct: 3 VDELRVDERIKSTLKER-------GIESFYPPQAEALKSGILEGKNALISIPTASGKTLI 55
Query: 1374 SEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433
+E A++ + G +AVYI PL+ALA+E++++++ + + +G+RV TG+
Sbjct: 56 AEIAMVH---RILTQG-GKAVYIVPLKALAEEKFQEFQ-DWEK-IGLRVAMATGDYDSKD 109
Query: 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMR 1492
+ L K III+T EK+D+L R +++ V + + DE+HLIG + G LEVI++ M
Sbjct: 110 EWLGKYDIIIATAEKFDSLLRHG--SSWIKDVKILVADEIHLIGSRDRGATLEVILAHML 167
Query: 1493 YIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNF 1552
K +I+ LS ++ N ++L EW+ A RPV L + +
Sbjct: 168 -------GKAQIIGLSATIGNPEELAEWLNAE-----LIVSDWRPVKLRRGVFYQGFVTW 215
Query: 1553 E----ARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608
E R + + + AI + K AL+FV R+ A++L +
Sbjct: 216 EDGSIDRFSSWEELVYDAIRKK----KGALIFVNMRRKAERVALELSKKVKSLLTKPEIR 271
Query: 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSS 1668
L E + +N E L +R GV + H GL + ++ +V F G IK V + +
Sbjct: 272 AL--NELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPT 329
Query: 1669 MCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHA- 1727
+ G+ A V++ Y P+ ++ QM+G A RP D G+ +I+ +
Sbjct: 330 LSAGINTPAFRVIIRDIWRYSD--FGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSD 387
Query: 1728 -PRKEYYKKFLYDAFPVESHL--HHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLT 1784
PR+ + S L L A I ++ + +++ TF
Sbjct: 388 DPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAY--- 444
Query: 1785 QNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYIS 1844
Q + Y+ L E + N + L ++ I I + + P + G+ + YI
Sbjct: 445 QRKDTYS------------LEEKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYID 492
Query: 1845 YTTIERFSSSLTPKTR---MKGLLEVLASASEYAQLPIRPGEEEVVRRLI--HHQRFSFE 1899
T + F + + G+ +++ + E E + R F+
Sbjct: 493 PYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYFD 552
Query: 1900 NP----------KFTDPHVKANALLQAHFSRQQVG------GNLKLDQEEVLLSASRLLQ 1943
+P + K +L A + G D ++ +A L+
Sbjct: 553 DPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVY 612
Query: 1944 AMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIET 2003
++ ++ G + + V G+ E L+QLP + A+ +
Sbjct: 613 SLKEIAKVLGAYEIVDYLETLRVRVKYGIREELIPLMQLPLVGRRRARALYN---SGFRS 669
Query: 2004 VFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQ 2046
+ D+ + +E ++ + +F ++ +
Sbjct: 670 IEDISQARPEELLKIEGIGV----KTVEAIFKFLGKNVKISEK 708
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
Score = 685 bits (1769), Expect = 0.0
Identities = 184/761 (24%), Positives = 323/761 (42%), Gaps = 116/761 (15%)
Query: 469 PLDPNEKLIKISEM--PEWAQPAFK--GMTQLNRVQSRVYKSALSSADNILLCAPTGAGK 524
L+ + + I ++ P K G+ +LN Q+ K L + +LL +PTG+GK
Sbjct: 2 GLE--LEWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGK 59
Query: 525 TNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVREL 584
T +A + I+ L N K +YV P++AL E ++ KV
Sbjct: 60 TLIAEMGIISFLLKNG----------GKAIYVTPLRALTNEKYLTFK-DWELIGFKVAMT 108
Query: 585 SGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVL 643
SGD ++ II+TT EK D + R + + V ++DE+H L+D RGPV+
Sbjct: 109 SGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPE--WLNEVNYFVLDELHYLNDPERGPVV 166
Query: 644 ESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ 703
ES+ R + L+ LSAT+ NY+ +A +L ++RPVPL +
Sbjct: 167 ESVTIRA--------KRRNLLALSATISNYKQIAKWLGAEP------VATNWRPVPLIEG 212
Query: 704 YIGIQVKK----------PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAI 753
I + KK ++ + + + +++ QVL+F +SRK TA I
Sbjct: 213 VIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKI 272
Query: 754 RD----TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDR 809
+ +L+ + L LK+ E + LK L+ G A HHAG+++ R
Sbjct: 273 ANYMNFVSLDENALSEILKQLDDIEEGGS-----DEKELLKSLISKGVAYHHAGLSKALR 327
Query: 810 QLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE-KGAWTELSPLDIMQML 868
L+E+ F ++V+V+T TLA GVNLPA TVII +N + G + E+ ++ QM
Sbjct: 328 DLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMS 387
Query: 869 GRAGRPQYDSYGEGIIITGHSELR---YYLSLMNQQLPIESQFVSK--LADQLNAEIVLG 923
GRAGRP +D GE I++ E + +++ PIES+ S+ L +
Sbjct: 388 GRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAE 447
Query: 924 TVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNN 983
+ K+ N+ + L +++ A L ++
Sbjct: 448 GNLSEKQLENFAYESLLAKQLVDV-----------------------YFDRAIRWLLEHS 484
Query: 984 LVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELC--RLFSLSEEFKY 1041
+K + F +T+ G+ + YI+ T + L+ EL L + + +
Sbjct: 485 FIKEE--GNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPL 542
Query: 1042 VTVRQDEKMELAKLLDRVPIPV----KESLEEPSAKINVLLQAYISQLKLEGLSLTS--- 1094
V+V ++E+ EL +LL+ + + +E S IN L A I + ++ + +
Sbjct: 543 VSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILS 602
Query: 1095 -------DMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQF 1147
D+ + ++ L + + + + + A+K L+ V
Sbjct: 603 KYNIGSGDLRNMVETMDWLTYSAYHLSRELKLNEHADKLRILNLRVRD------------ 650
Query: 1148 NGIPNEILMKLEKKDFAWERY---YDLSPQELGELIRFPKM 1185
GI E+L ++ +R Y+ +ELG+++ P
Sbjct: 651 -GIKEELLELVQISGVGRKRARLLYNNGIKELGDVVMNPDK 690
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
Score = 537 bits (1386), Expect = e-170
Identities = 161/760 (21%), Positives = 308/760 (40%), Gaps = 88/760 (11%)
Query: 1317 LDLQPLPVTALRNP--LYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTIC 1373
L+L+ +P+ L+ P + E + +G K NP QT+ + +L+ +PTGSGKT+
Sbjct: 3 LELEWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLI 62
Query: 1374 SEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433
+E I+ + G +A+Y+ PL AL E+Y + K + +G +V +G+ D
Sbjct: 63 AEMGIISF---LLKNG-GKAIYVTPLRALTNEKYLTF--KDWELIGFKVAMTSGDYDTDD 116
Query: 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMR 1492
L+ III+T EK D+L R + ++ +V+ F++DELH + GPV+E + R +
Sbjct: 117 AWLKNYDIIITTYEKLDSLWRHRPE--WLNEVNYFVLDELHYLNDPERGPVVESVTIRAK 174
Query: 1493 YIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDIT-- 1550
++ALS +++N K + +W+GA RPVPL + +
Sbjct: 175 RR--------NLLALSATISNYKQIAKWLGA-----EPVATNWRPVPLIEGVIYPERKKK 221
Query: 1551 --------NFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDG 1602
N ++ + +KN LVF SRK TA+ + Y +
Sbjct: 222 EYNVIFKDNTTKKVHGDDAIIAYTLDSLSKN-GQVLVFRNSRKMAESTALKIANYMNFVS 280
Query: 1603 DQKSAFLLWPAEEVEPFIDNIQE--EMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKI 1660
++A L ++++ + + E+LK+ + GV Y H GL+K ++++ F KI
Sbjct: 281 LDENA-LSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKI 339
Query: 1661 KVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQ-ENAHTDYPVTDLLQMMGHASRPLLDNSG 1719
KV V + ++ GV L A V++ ++ + + + P+ + QM G A RP D G
Sbjct: 340 KVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIG 399
Query: 1720 KCVILCH---APRKEYYKKFLYDAFPVESHLH--HFLHDNFNAEIVAGVIENKQDAVDYL 1774
+ +++ + + K L D P+ES L + + A +++ ++
Sbjct: 400 ESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFA 459
Query: 1775 TWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNH 1834
+ + ++L + + I L I E + + +N
Sbjct: 460 YESLLAKQL--------------------VDVYFDRAIRWLLEHSFIKEEGNT-FALTNF 498
Query: 1835 GMIASYYYISYTTIERFSSSLTP--KTRMKGLLEVLASASEYAQLPIRPGE--------E 1884
G + YI+ T + L + L +LA + + + E E
Sbjct: 499 GKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLE 558
Query: 1885 EVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVG------GNLKLDQEEVLLSA 1938
++ L+ + + + +K +++ D ++ +
Sbjct: 559 DLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETM 618
Query: 1939 SRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPG 1998
L + + A ++ V G+ E L+Q+ + A+ N
Sbjct: 619 DWLTYSAYHLSRELKLNEHADKLRILNLRVRDGIKEELLELVQISGVGRKRARLLYNN-- 676
Query: 1999 KSIETVFDLVEMEDDERRELLQMSDVQ--LLDIARFCNRF 2036
I+ + D+V D+ + LL + + + AR NRF
Sbjct: 677 -GIKELGDVVMNP-DKVKNLLGQKLGEKVVQEAARLLNRF 714
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
Score = 669 bits (1728), Expect = 0.0
Identities = 166/715 (23%), Positives = 301/715 (42%), Gaps = 90/715 (12%)
Query: 477 IKISEMPEWAQPAF------KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVL 530
+K+ E+ E +G+ +L Q+ + S N+LL PT AGKT +A +
Sbjct: 1 MKVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSG-KNLLLAMPTAAGKTLLAEM 59
Query: 531 TILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
++++ K +YV P++AL E + + + +++ +GD
Sbjct: 60 AMVREAIKGG-----------KSLYVVPLRALAGEKYESFK-KWEKIGLRIGISTGDYES 107
Query: 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVAR 649
+ + + IIVTT EK D + R + + V L++DEIHLL RG LE +V +
Sbjct: 108 RDEHLGDCDIIVTTSEKADSLIRNRAS--WIKAVSCLVVDEIHLLDSEKRGATLEILVTK 165
Query: 650 TVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQV 709
R + +R++GLSAT PN ++A +L + + + +RPVPL + +
Sbjct: 166 MRR----MNKALRVIGLSATAPNVTEIAEWLDADY------YVSDWRPVPLVEGVLCEGT 215
Query: 710 KKPL-QRFQLMNDLCYEKVV--AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRF 766
+ F + +E++V VA VL+F +R+ KTA + ++
Sbjct: 216 LELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAI------TAKY 269
Query: 767 LKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826
++ + + + IL+ + S L + + G A HHAG+ G R++VED F G+++V+V+
Sbjct: 270 VENEGLEKAILEE-NEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVA 328
Query: 827 TATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886
T TLA GVNLPA VI++ ++ G + + QM GRAGRP D GE III
Sbjct: 329 TPTLAAGVNLPARRVIVRSLYRFD---GYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIV 385
Query: 887 GHSELRYYLS--LMNQQLPIESQFV--SKLADQLNAEIVLGTVQNAKEACNWIGYTYLYI 942
G + + + + I S+ + L + I G + +E ++ T+ +
Sbjct: 386 GKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFK 445
Query: 943 RMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRI 1002
+ + + + L+ +V ++ + T LG +
Sbjct: 446 QNEISL--------------------SYELERVVRQLENWGMVV---EAAHLAPTKLGSL 482
Query: 1003 ASYYYISHGTISTYNEHL-KPTMGDIELCRLFSLSEEFKYVTVRQDEK------MELAKL 1055
S YI T +++ L + + DI L + + + +TVR+ + L K
Sbjct: 483 VSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTDSWVEEEAFRLRKE 542
Query: 1056 LDRVPIP--VKESLEEPSAKINVLLQAYISQLKLEGLSLT-----SDMVFITQSAGRLLR 1108
L P V+ K + L+ +I + + + D+ I ++A L
Sbjct: 543 LSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSN 602
Query: 1109 ALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF 1163
A+ I + G ++ L++ + + L + I KL
Sbjct: 603 AMNRIAEEVGNTSVSG----LTERIKHGVKEELLELVRIRHIGRVRARKLYNAGI 653
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
Score = 578 bits (1492), Expect = 0.0
Identities = 160/723 (22%), Positives = 296/723 (40%), Gaps = 82/723 (11%)
Query: 1318 DLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFA 1377
+ V L+ G + P Q + ++ + N+L+A PT +GKT+ +E A
Sbjct: 9 SISSYAVGILKEE-------GIEELFPPQAEAVEKVF-SGKNLLLAMPTAAGKTLLAEMA 60
Query: 1378 ILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE 1437
++R K +++Y+ PL ALA E+Y ++ K+ + +G+R+ TG+ + L
Sbjct: 61 MVREAIKGG-----KSLYVVPLRALAGEKYESFK-KW-EKIGLRIGISTGDYESRDEHLG 113
Query: 1438 KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIAS 1496
II++T EK D+L R +++ VS ++DE+HL+ + G LE++V++MR +
Sbjct: 114 DCDIIVTTSEKADSLIRNR--ASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNK 171
Query: 1497 QVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQG-VDITNFEAR 1555
+R++ LS + N ++ EW+ A + RPVPL + + F+
Sbjct: 172 ----ALRVIGLSATAPNVTEIAEWLDAD-----YYVSDWRPVPLVEGVLCEGTLELFDGA 222
Query: 1556 MQAMTKPTFTAIVQHAKNE-KPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAE 1614
+ F +V+ E LVF +R+ TAV L ++ + + E
Sbjct: 223 FSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEE 282
Query: 1615 EVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVP 1674
+ L +R G + H GL + VV F G IKV V + ++ GV
Sbjct: 283 N-----EGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVN 337
Query: 1675 LTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE-YY 1733
L A V+V +DG V++ QM G A RP +D G+ +I+ +E
Sbjct: 338 LPARRVIVRSLYRFDGYS---KRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAV 394
Query: 1734 KKFLY-DAFPVESHLHHF--LHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYY 1790
K++++ + + S L L + + I G + ++ D+ TF +++ + +Y
Sbjct: 395 KRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYE 454
Query: 1791 NLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIER 1850
+E + LE + E L+P+ G + S YI T
Sbjct: 455 -----------------LERVVRQLENWGM--VVEAAHLAPTKLGSLVSRLYIDPLTGFI 495
Query: 1851 FSSSLT-PKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENP-------K 1902
F L+ + G L ++ + +L +R + V ++ P
Sbjct: 496 FHDVLSRMELSDIGALHLICRTPDMERLTVRKTDSWVEEEAFRLRKELSYYPSDFSVEYD 555
Query: 1903 FTDPHVKANALLQAHFSRQQVG------GNLKLDQEEVLLSASRLLQAMVDVISSNGWLS 1956
+ VK L+ + G D ++ +A L AM + G S
Sbjct: 556 WFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNTS 615
Query: 1957 LALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERR 2016
++ L ++ + G+ E L+++ H + A++ G I D+V ++
Sbjct: 616 VSGL----TERIKHGVKEELLELVRIRHIGRVRARKLYNA-G--IRNAEDIVRH-REKVA 667
Query: 2017 ELL 2019
L+
Sbjct: 668 SLI 670
|
| >2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 Length = 339 | Back alignment and structure |
|---|
Score = 334 bits (856), Expect = e-103
Identities = 183/335 (54%), Positives = 248/335 (74%), Gaps = 7/335 (2%)
Query: 1824 EEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGE 1883
MD++P N GMIA+YYYI+YTTIE FS SL KT+++GL+E++++A+EY +PIR E
Sbjct: 8 HSHMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHE 67
Query: 1884 EEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQ 1943
+ ++R+L NPKF DPHVK N LLQAH SR Q+ L+ D EE+L A RL+Q
Sbjct: 68 DNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQ 127
Query: 1944 AMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIET 2003
A VDV+SSNGWLS AL AME++QMVTQ MW +DS L QLPHF + KRC + +E+
Sbjct: 128 ACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKG---VES 184
Query: 2004 VFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVL 2063
VFD++EMED+ER LLQ++D Q+ D+ARFCNR+PNI++S+EV D +++R+G + + V L
Sbjct: 185 VFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQL 244
Query: 2064 ERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPA 2123
ER+ E GPV + +P+ +EEGWW+V+GD K+N L++IKR++LQ+K++VKLDF AP
Sbjct: 245 EREEE---VTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAP- 300
Query: 2124 EAGKKTYTLYFMCDSYMGCDQEYAFTVDVKEAGEE 2158
G YTLYFM D+YMGCDQEY F+VDVKEA +
Sbjct: 301 ATGAHNYTLYFMSDAYMGCDQEYKFSVDVKEAETD 335
|
| >2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 Length = 339 | Back alignment and structure |
|---|
Score = 209 bits (532), Expect = 7e-60
Identities = 74/332 (22%), Positives = 142/332 (42%), Gaps = 19/332 (5%)
Query: 984 LVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVT 1043
+ +LG IA+YYYI++ TI ++ L L + S + E++ +
Sbjct: 3 HHHHHHSHMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIP 62
Query: 1044 VRQDEKMELAKLLDRVPIPVKE-SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQS 1102
+R E L +L +VP + +P K N+LLQA++S+++L L SD I
Sbjct: 63 IRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSA-ELQSDTEEILSK 121
Query: 1103 AGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKD 1162
A RL++A +++ GW A A+ L++MVT+ MWS + L+Q +E + + K
Sbjct: 122 AIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKG 181
Query: 1163 F-AWERYYDLSPQELGELI-RFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTIT 1220
+ ++ +E L+ + +F +++P + L+ V + +
Sbjct: 182 VESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVL 241
Query: 1221 PDFLWDDKVHGYV----------EPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFT 1270
+++V G V E +WV++ D ++ + L+++ L+F
Sbjct: 242 VQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQK---AKVKLDFV 298
Query: 1271 VPIYEPLPPQYFIRVVSDKWLGSQTVLPVSFR 1302
P Y + +SD ++G S
Sbjct: 299 AP--ATGAHNYTLYFMSDAYMGCDQEYKFSVD 328
|
| >3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A Length = 328 | Back alignment and structure |
|---|
Score = 315 bits (807), Expect = 7e-97
Identities = 115/333 (34%), Positives = 212/333 (63%), Gaps = 9/333 (2%)
Query: 1823 IEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPG 1882
+E +S ++G+IAS+Y +S+ TI+ F SSL+ + +K +L VL++A E+ +P+R G
Sbjct: 3 MEATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKG 62
Query: 1883 EEEVVRRLIHHQRFSF-ENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRL 1941
+ ++ +L F E+ K LLQA+FSR ++ + + D +++L L
Sbjct: 63 DRALLVKLSKRLPLRFPEHTSSGSVSFKVFLLLQAYFSRLELPVDFQNDLKDILEKVVPL 122
Query: 1942 LQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSI 2001
+ +VD++S+NG+L+ A AM+++QM+ QG+W+ D+ L Q+PHF + ++C+E ++
Sbjct: 123 INVVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEKCKE---INV 178
Query: 2002 ETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQV 2061
ETV+D++ +ED+ER E+L ++D QL +A F N +PN+++++ + +S+++ +G + +
Sbjct: 179 ETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITI 238
Query: 2062 VLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSR-VKLDFA 2120
L RD+ E V S +YP K E WWLV+G+ +L AIK+V+L ++++ +L+F
Sbjct: 239 QLTRDV--EPENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKETQQYELEFD 296
Query: 2121 APAEAGKKTYTLYFMCDSYMGCDQEYAFTVDVK 2153
P +GK T++ +CDSY+ D+E +F ++VK
Sbjct: 297 TP-TSGKHNLTIWCVCDSYLDADKELSFEINVK 328
|
| >3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A Length = 328 | Back alignment and structure |
|---|
Score = 186 bits (472), Expect = 5e-52
Identities = 74/327 (22%), Positives = 137/327 (41%), Gaps = 21/327 (6%)
Query: 991 SGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKM 1050
+ G IAS+Y +S TI ++ L T + + S + EF+ V +R+ ++
Sbjct: 6 TEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRA 65
Query: 1051 ELAKLLDRVPIPVKE--SLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLR 1108
L KL R+P+ E S S K+ +LLQAY S+L+L +D+ I + L+
Sbjct: 66 LLVKLSKRLPLRFPEHTSSGSVSFKVFLLLQAYFSRLELPV-DFQNDLKDILEKVVPLIN 124
Query: 1109 ALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFA-WER 1167
+ +I+ G+ A A++L++M+ + +W V PLRQ N+IL K ++ +
Sbjct: 125 VVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQIPHFNNKILEKCKEINVETVYD 183
Query: 1168 YYDLSPQELGELIRF-PKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVELTITPDFLWD 1226
L +E E++ + FV+ +P + L + + V+ IT D
Sbjct: 184 IMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQLTRD 243
Query: 1227 DKVHG-----------YVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYE 1275
+ +E +W+++ + + + + L K+ + + L F P
Sbjct: 244 VEPENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKE--TQQYELEFDTP--T 299
Query: 1276 PLPPQYFIRVVSDKWLGSQTVLPVSFR 1302
I V D +L + L
Sbjct: 300 SGKHNLTIWCVCDSYLDADKELSFEIN 326
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 1e-38
Identities = 117/634 (18%), Positives = 217/634 (34%), Gaps = 102/634 (16%)
Query: 343 DQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKSIREEARRLKDESASDGG 402
D + + EE P + + ++ + + EE ++ ++ +
Sbjct: 37 DSTDLFDVFEETPVELPTDSNGEKNADTNVGDTPDHTQDKKHGLEEEKEEHEENNSENKK 96
Query: 403 RDRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHV 462
D + + + A ++ + K + + G +
Sbjct: 97 IKSNKSKTEDKNKKVVVPVLADSFEQEASRE----VDASKGLTNSETLQVEQDGKVRLSH 152
Query: 463 PAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGA 522
L PN I+E A L+ Q + +++L+ A T A
Sbjct: 153 QVRHQVALPPNYDYTPIAEHK-RVNEARTYPFTLDPFQDTAIS-CIDRGESVLVSAHTSA 210
Query: 523 GKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVR 582
GKT VA I Q L + +++Y +P+KAL + L V
Sbjct: 211 GKTVVAEYAIAQSLKNKQ-----------RVIYTSPIKALSNQKYRELLAEFGD----VG 255
Query: 583 ELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGP 641
++GD T+ + +V T E + + + V +I DE+H + D RG
Sbjct: 256 LMTGDITINP----DAGCLVMTTEILRSMLYRGSEVMRE--VAWVIFDEVHYMRDKERGV 309
Query: 642 VLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLS 701
V E + + +R V LSAT+PN + A ++ + ++RP PL
Sbjct: 310 VWEETII-------LLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPL- 361
Query: 702 QQYIGIQVKKPLQRFQLMNDLCYEKVVAVA------------------------------ 731
Q Y+ + E+ A
Sbjct: 362 QHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSA 421
Query: 732 ------------------GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVS 773
+ V++F S+++ + A + +D E
Sbjct: 422 KGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSD------DEKEAL 475
Query: 774 REILQSHTDMVKSND--------LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLV 825
+I + ++ D + LL G IHH+G+ ++++E LF +G ++VL
Sbjct: 476 TKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLF 535
Query: 826 STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885
+T T + G+N+PA TV+ + ++ ++ W +S + +QM GRAGR D G I++
Sbjct: 536 ATETFSIGLNMPAKTVVFTSVRKWDGQQFRW--VSGGEYIQMSGRAGRRGLDDRGIVIMM 593
Query: 886 TGHSELRYYLSLMN--QQLPIESQFVSKLADQLN 917
M Q ++S F LN
Sbjct: 594 IDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILN 627
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 4e-34
Identities = 110/537 (20%), Positives = 203/537 (37%), Gaps = 93/537 (17%)
Query: 1275 EPLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEA 1334
P+ F + S + S+ + + K ++ LP P+ E
Sbjct: 113 VPVLADSFEQEASREVDASKGLTNSETLQVEQDGKVRLSHQVRHQVALPPNYDYTPIAEH 172
Query: 1335 LYQGFKH-----FNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETG 1389
+P Q + + ++VLV+A T +GKT+ +E+AI ++ +
Sbjct: 173 KRVNEARTYPFTLDPFQDTAISCIDR-GESVLVSAHTSAGKTVVAEYAIAQSLKNK---- 227
Query: 1390 VMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKW 1449
R +Y +P++AL+ ++YR+ +FG +G+ +TG D+ + ++ T E
Sbjct: 228 -QRVIYTSPIKALSNQKYRELLAEFGD-VGL----MTG----DITINPDAGCLVMTTEIL 277
Query: 1450 DALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALS 1508
++ R + +++V+ I DE+H + + G V E + + +K+R V LS
Sbjct: 278 RSMLYR--GSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLP-------DKVRYVFLS 328
Query: 1509 TSLANAKDLGEWIGAT-SHGLFNFPPGVRPVPLEIHI---------------QGVDITNF 1552
++ NA + EWI S RP PL+ ++ NF
Sbjct: 329 ATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENF 388
Query: 1553 EARMQAMT-----------------------------KPTFTAIVQH--AKNEKPALVFV 1581
+ M +++ K IV+ K P +VF
Sbjct: 389 QKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFS 448
Query: 1582 PSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEE--------MLKATLR 1633
S++ A+ + D+K A + I + E + LR
Sbjct: 449 FSKRDCEELALKMSKLDFNSDDEKEAL----TKIFNNAIALLPETDRELPQIKHILPLLR 504
Query: 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQEN 1693
G+G H GL +EV+ LF+ G +KV + + G+ + A VV + +DGQ+
Sbjct: 505 RGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQ- 563
Query: 1694 AHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHA--PRKEYYKKFLYDAFPVESHLH 1748
+ +QM G A R LD+ G +++ + A ++S H
Sbjct: 564 -FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFH 619
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 3e-38
Identities = 107/531 (20%), Positives = 188/531 (35%), Gaps = 96/531 (18%)
Query: 445 LPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRVQSRVY 504
+ + G + L PN I+E A L+ Q
Sbjct: 37 TNSETLQVEQDGKVRLSHQVRHQVALPPNYDYTPIAEHKR-VNEARTYPFTLDPFQDTAI 95
Query: 505 KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564
+ +++L+ A T AGKT VA I Q L + +++Y +P+KAL
Sbjct: 96 S-CIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQ-----------RVIYTSPIKALSN 143
Query: 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLV 624
+ L V ++GD T+ + +V T E + + + V
Sbjct: 144 QKYRELLAEFGD----VGLMTGDITINP----DAGCLVMTTEILRSMLYRGSEVMRE--V 193
Query: 625 KLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683
+I DE+H + D RG V E + + +R V LSAT+PN + A ++
Sbjct: 194 AWVIFDEVHYMRDKERGVVWEETII-------LLPDKVRYVFLSATIPNAMEFAEWICKI 246
Query: 684 LEKGLFYFDNSYRPVPLSQQYI-------------------------------------- 705
+ ++RP PL
Sbjct: 247 HSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPN 306
Query: 706 ------GIQVKKPLQRFQLMNDLCYEKVVAVAGKHQ---VLIFVHSRKETAKTARAIRDT 756
+ K+V + K + V++F S+++ + A +
Sbjct: 307 STDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKL 366
Query: 757 ALENDTLGRFLKEDSVSREILQSHTDMVKSND--------LKDLLPYGFAIHHAGMTRGD 808
+D E +I + ++ D + LL G IHH+G+
Sbjct: 367 DFNSD------DEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPIL 420
Query: 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868
++++E LF +G ++VL +T T + G+N+PA TV+ + ++ ++ W +S + +QM
Sbjct: 421 KEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRW--VSGGEYIQMS 478
Query: 869 GRAGRPQYDSYGEGIIITGHSELRYYLSLMN--QQLPIESQFVSKLADQLN 917
GRAGR D G I++ M Q ++S F LN
Sbjct: 479 GRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILN 529
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 | Back alignment and structure |
|---|
Score = 144 bits (363), Expect = 1e-34
Identities = 107/520 (20%), Positives = 197/520 (37%), Gaps = 93/520 (17%)
Query: 1292 GSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKH-----FNPIQ 1346
S+ + + K ++ LP P+ E +P Q
Sbjct: 32 ASKGLTNSETLQVEQDGKVRLSHQVRHQVALPPNYDYTPIAEHKRVNEARTYPFTLDPFQ 91
Query: 1347 TQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406
+ + ++VLV+A T +GKT+ +E+AI ++ + R +Y +P++AL+ ++
Sbjct: 92 DTAISCIDR-GESVLVSAHTSAGKTVVAEYAIAQSLKNK-----QRVIYTSPIKALSNQK 145
Query: 1407 YRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVS 1466
YR+ +FG +G+ +TG D+ + ++ T E ++ R + +++V+
Sbjct: 146 YRELLAEFGD-VGL----MTG----DITINPDAGCLVMTTEILRSMLYR--GSEVMREVA 194
Query: 1467 LFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGAT- 1524
I DE+H + + G V E + + +K+R V LS ++ NA + EWI
Sbjct: 195 WVIFDEVHYMRDKERGVVWEETIILLP-------DKVRYVFLSATIPNAMEFAEWICKIH 247
Query: 1525 SHGLFNFPPGVRPVPLEIHI---------------QGVDITNFEARMQAMT--------- 1560
S RP PL+ ++ NF+ M +++
Sbjct: 248 SQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNS 307
Query: 1561 --------------------KPTFTAIVQH--AKNEKPALVFVPSRKYVRLTAVDLMTYS 1598
K IV+ K P +VF S++ A+ +
Sbjct: 308 TDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLD 367
Query: 1599 SMDGDQKSAFLLWPAEEVEPFIDNIQEE--------MLKATLRHGVGYLHEGLNKTDQEV 1650
D+K A + I + E + LR G+G H GL +EV
Sbjct: 368 FNSDDEKEAL----TKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEV 423
Query: 1651 VSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHA 1710
+ LF+ G +KV + + G+ + A VV + +DGQ+ + +QM G A
Sbjct: 424 IEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQ--FRWVSGGEYIQMSGRA 481
Query: 1711 SRPLLDNSGKCVILCHA--PRKEYYKKFLYDAFPVESHLH 1748
R LD+ G +++ + A ++S H
Sbjct: 482 GRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFH 521
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 1e-25
Identities = 39/176 (22%), Positives = 69/176 (39%), Gaps = 15/176 (8%)
Query: 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559
Q + A N ++CAPTG GKT V++L L K+V+ A
Sbjct: 9 QLELALPAKKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKG------KVVFFANQ 61
Query: 560 KALVAEVVGNLSNRLQMYDVKVRELSGD---QTLTRQQIEETQIIVTTPEKWDIITRKSG 616
+ + S + + +SG + IE+ II+ TP+ G
Sbjct: 62 IPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNN-G 120
Query: 617 DRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTV--RQIETTKEHIRLVGLSATL 670
+ L+I DE H + ++ I+ R + + E+ ++VGL+A++
Sbjct: 121 AIPSLSVFTLMIFDECH--NTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASV 174
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 74.9 bits (183), Expect = 1e-13
Identities = 34/165 (20%), Positives = 65/165 (39%), Gaps = 11/165 (6%)
Query: 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416
N ++ APTG GKT S + +K + V+ A + +++ + F +
Sbjct: 19 GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78
Query: 1417 GLGMRVVELTGETAMDLK---LLEKGQIIISTPEKW-DALSRRWKQRKYVQQVSLFIIDE 1472
LG + ++G T+ + ++E III TP+ + L+ + +L I DE
Sbjct: 79 -LGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPS--LSVFTLMIFDE 135
Query: 1473 LHLIGGQGGPVLEVIVSRM--RYIASQVENKIRIVALSTSLANAK 1515
H I+ R + + ++V L+ S+
Sbjct: 136 CHNTSKN--HPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGD 178
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 3e-25
Identities = 65/357 (18%), Positives = 123/357 (34%), Gaps = 38/357 (10%)
Query: 335 CTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKS---IREEAR 391
T LA A + + K+E+ +L ++ AT S I E
Sbjct: 84 YTGLAEAIENWDFSKLEKL-----ELHRQLLKRIEATMLEVDPVALIPYISTCLIDRECE 138
Query: 392 RLKDESASDG----GRDRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPE 447
++ S + + R W QL A G + A+ D+ E
Sbjct: 139 EIQQISENRSKAAGITKLIECLCRSDKEHWPKSLQL------ALDTTGYYRASELWDIRE 192
Query: 448 GSQRFTNKGYEEIHVPAMKHK-------PLDPNEKLIKISEMPEWAQPAFK-GMTQLNRV 499
+ + + + ++ D N S +P +
Sbjct: 193 DNAKDVDSEMTDASEDCLEASMTYSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKARSY 252
Query: 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559
Q + + A++ N L+CAPTG+GKT V++L + K+V++A
Sbjct: 253 QIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAGRKA------KVVFLATK 305
Query: 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTL---TRQQIEETQIIVTTPEKWDIITRKSG 616
+ + + + V+ +SG+ + IE++ IIV TP+ G
Sbjct: 306 VPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED-G 364
Query: 617 DRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY 673
T + L+I DE H N P + ++ + + +++GL+A++
Sbjct: 365 TLTSLSIFTLMIFDECHNTTGNH-PYNVLMTRYLEQKFNSASQLPQILGLTASVGVG 420
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 67.3 bits (163), Expect = 5e-11
Identities = 41/213 (19%), Positives = 76/213 (35%), Gaps = 10/213 (4%)
Query: 1307 PEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPT 1366
E+ P L + + P K Q ++ N N L+ APT
Sbjct: 217 SEEAEPDDNLSENLGSAAEGIGKPP---PVYETKKARSYQIELAQPAIN-GKNALICAPT 272
Query: 1367 GSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELT 1426
GSGKT S + Q + V++A + +++ ++ F + G V ++
Sbjct: 273 GSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER-QGYSVQGIS 331
Query: 1427 GETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483
GE ++ ++E II+ TP+ + +L I DE H G P
Sbjct: 332 GENFSNVSVEKVIEDSDIIVVTPQILVNS-FEDGTLTSLSIFTLMIFDECHNTTG-NHPY 389
Query: 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANAKD 1516
++ + + +I+ L+ S+
Sbjct: 390 NVLMTRYLEQKFNSASQLPQILGLTASVGVGNA 422
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 6e-25
Identities = 50/208 (24%), Positives = 86/208 (41%), Gaps = 26/208 (12%)
Query: 480 SEMPEWAQPAFK-GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLAL 538
S+ A A QL Q V + AL NI++C PTG+GKT VAV L
Sbjct: 17 SDEENVAARASPEPELQLRPYQMEVAQPALE-GKNIIICLPTGSGKTRVAVYIAKDHLDK 75
Query: 539 NRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD---QTLTRQQI 595
+ K++ + LV ++ +V LSGD + + +
Sbjct: 76 KKKASEPG-----KVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV 130
Query: 596 EETQIIVTTPEKW--DIITRKSGDRTYTQL--VKLLIIDEIHLLHDNRGPVLESIV---- 647
+ II++T + ++ ++G+ QL L+IIDE H H N+ V +I+
Sbjct: 131 KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECH--HTNKEAVYNNIMRHYL 188
Query: 648 ------ARTVRQIETTKEHIRLVGLSAT 669
R ++ + +++GL+A+
Sbjct: 189 MQKLKNNRLKKENKPVIPLPQILGLTAS 216
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 4e-15
Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 25/171 (14%)
Query: 1358 DNVLVAAPTGSGKTICSEFAI---LRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414
N+++ PTGSGKT + + L +KASE G + + + L ++ +R F
Sbjct: 49 KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPG--KVIVLVNKVLLVEQLFRKEFQPF 106
Query: 1415 GQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKW--DALSRRWKQRKYVQ--QVSL 1467
+ RV+ L+G+T + + +++ IIIST + L+ + VQ SL
Sbjct: 107 LKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSL 165
Query: 1468 FIIDELHLIGGQGGPVLEVIVSRM----------RYIASQVENKIRIVALS 1508
IIDE H V I+ + V +I+ L+
Sbjct: 166 IIIDECHHT--NKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLT 214
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 4e-24
Identities = 39/182 (21%), Positives = 77/182 (42%), Gaps = 14/182 (7%)
Query: 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIV 554
+ Q + + A++ N L+CAPTG+GKT V++L + K+V
Sbjct: 7 KARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAGRKA------KVV 59
Query: 555 YVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL---TRQQIEETQIIVTTPEKWDII 611
++A + + + + V+ +SG+ + IE++ IIV TP+
Sbjct: 60 FLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNS 119
Query: 612 TRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ-IETTKEHIRLVGLSATL 670
G T + L+I DE H + ++ R + Q + + +++GL+A++
Sbjct: 120 FED-GTLTSLSIFTLMIFDECH--NTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASV 176
Query: 671 PN 672
Sbjct: 177 GV 178
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 70.4 bits (171), Expect = 3e-12
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 8/170 (4%)
Query: 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416
N L+ APTGSGKT S + Q + V++A + +++ ++ F +
Sbjct: 22 GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81
Query: 1417 GLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDEL 1473
G V ++GE ++ K++E II+ TP+ + +L I DE
Sbjct: 82 -QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNS-FEDGTLTSLSIFTLMIFDEC 139
Query: 1474 HLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL--ANAKDLGEWI 1521
H G P ++ + + +I+ L+ S+ NAK++ E I
Sbjct: 140 HNTTG-NHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETI 188
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 1e-22
Identities = 62/356 (17%), Positives = 124/356 (34%), Gaps = 38/356 (10%)
Query: 335 CTRLARAQDQEERKKIEEE------MMGLGPDLAAILDQLHATRATAKERQKNLEKSIRE 388
T LA A + + K+E+ + + + + + + E+ +
Sbjct: 84 YTGLAEAIENWDFSKLEKLELHRQLLKRIEATMLEVDPVALIPYISTCLIDRECEEIQQI 143
Query: 389 EARRLKDESASDGGRDRRGLVDRDADGGWLGQRQLLDLDTLAFQQGGLFMANRKCDLPEG 448
R S + G + R W QL A G + A+ D+ E
Sbjct: 144 SENR----SKAAGITKLIECLCRSDKEHWPKSLQL------ALDTTGYYRASELWDIRED 193
Query: 449 SQRFTNKGYEEIHVPAMKHK-------PLDPNEKLIKISEMPEWAQPAFK-GMTQLNRVQ 500
+ + + + ++ D N S +P + Q
Sbjct: 194 NAKDVDSEMTDASEDCLEASMTYSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKARSYQ 253
Query: 501 SRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560
+ + A++ N L+CAPTG+GKT V++L + K+V++A
Sbjct: 254 IELAQPAIN-GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKA------KVVFLATKV 306
Query: 561 ALVAEVVGNLSNRLQMYDVKVRELSGDQTL---TRQQIEETQIIVTTPEKWDIITRKSGD 617
+ + + + V+ +SG+ + IE++ IIV TP+ G
Sbjct: 307 PVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED-GT 365
Query: 618 RTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ-IETTKEHIRLVGLSATLPN 672
T + L+I DE H + ++ R + Q + + +++GL+A++
Sbjct: 366 LTSLSIFTLMIFDECH--NTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGV 419
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 65.4 bits (158), Expect = 2e-10
Identities = 46/224 (20%), Positives = 84/224 (37%), Gaps = 12/224 (5%)
Query: 1303 HLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLV 1362
+ E+ P L + + P K Q ++ N N L+
Sbjct: 213 SMTYSEEAEPDDNLSENLGSAAEGIGKPP---PVYETKKARSYQIELAQPAIN-GKNALI 268
Query: 1363 AAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRV 1422
APTGSGKT S + Q + V++A + +++ ++ F + G V
Sbjct: 269 CAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER-QGYSV 327
Query: 1423 VELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479
++GE ++ ++E II+ TP+ + +L I DE H G
Sbjct: 328 QGISGENFSNVSVEKVIEDSDIIVVTPQILVNS-FEDGTLTSLSIFTLMIFDECHNTTG- 385
Query: 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSL--ANAKDLGEWI 1521
P ++ + + +I+ L+ S+ NAK++ E I
Sbjct: 386 NHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETI 429
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 | Back alignment and structure |
|---|
Score = 99.5 bits (247), Expect = 7e-21
Identities = 60/295 (20%), Positives = 106/295 (35%), Gaps = 14/295 (4%)
Query: 626 LLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLE 685
+ E+ + + LE+ + + N
Sbjct: 222 IWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTR 281
Query: 686 KGLFYFDNSYR----PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQ---VLI 738
G NS R K+ + + ++V K + +++
Sbjct: 282 DGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVV 341
Query: 739 FVHSRKETAKTARAIRDTALENDTLGRFLKE--DSVSREILQSHTDMVKSNDLKDLLPYG 796
FV S+K + A + N+ + + + + D+ + + LL G
Sbjct: 342 FVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERG 401
Query: 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAW 856
A+HH G+ ++L+E LF G ++VL +T T A G+NLP TVI + ++
Sbjct: 402 IAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRE 461
Query: 857 TELSPLDIMQMLGRAGRPQYDSYGEGIIIT---GHSELRYYLSLMNQQLPIESQF 908
L+P + QM GRAGR DS G I++ S + M ++SQF
Sbjct: 462 --LTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQF 514
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 | Back alignment and structure |
|---|
Score = 78.0 bits (191), Expect = 2e-14
Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 24/203 (11%)
Query: 1344 PIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403
Q + L D+V VAA T +GKT+ +E+AI H+ + + +Y +P++AL+
Sbjct: 42 TFQKEAVYHLEQ-GDSVFVAAHTSAGKTVVAEYAIAMAHRN-----MTKTIYTSPIKALS 95
Query: 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQ 1463
+++RD++ F + +TG D+++ +I T E S ++ ++
Sbjct: 96 NQKFRDFKETFDDV---NIGLITG----DVQINPDANCLIMTTEIL--RSMLYRGADLIR 146
Query: 1464 QVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIG 1522
V I DE+H + G V E ++ + ++ + LS ++ N + WIG
Sbjct: 147 DVEFVIFDEVHYVNDQDRGVVWEEVIIMLP-------QHVKFILLSATVPNTYEFANWIG 199
Query: 1523 ATSHGLFN-FPPGVRPVPLEIHI 1544
T RPVPLEI+I
Sbjct: 200 RTKQKNIYVISTPKRPVPLEINI 222
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 | Back alignment and structure |
|---|
Score = 76.0 bits (186), Expect = 1e-13
Identities = 52/289 (17%), Positives = 107/289 (37%), Gaps = 39/289 (13%)
Query: 1555 RMQAMTKPTFTAIVQH--AKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP 1612
+K T+ IV + + P +VFV S+K A L + + +KS
Sbjct: 315 TQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQI---- 370
Query: 1613 AEEVEPFIDNIQEE--------MLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCV 1664
+E I +++E ++ L G+ H GL +E++ LF G IKV
Sbjct: 371 HMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLF 430
Query: 1665 MSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVIL 1724
+ + G+ L V+ + +DG N + + QM G A R LD++G +++
Sbjct: 431 ATETFAMGLNLPTRTVIFSSIRKHDG--NGLRELTPGEFTQMAGRAGRRGLDSTGTVIVM 488
Query: 1725 CHAPR---KEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYR 1781
+ + + + ++S L N ++ + + ++F
Sbjct: 489 AYNSPLSIATFKEVTMGVPTRLQSQFR--LTYNMILNLLRI---EALRVEEMIKYSFS-- 541
Query: 1782 RLTQNPNYYNLQGVSHRHLSDHLSEL--VENTISDLEASKCIIIEEDMD 1828
+ +H ++ ++ + +E C I + D++
Sbjct: 542 -----------ENAKETLQPEHEKQIKVLQEELQTIEYKSCEICDNDIE 579
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 3e-12
Identities = 59/323 (18%), Positives = 114/323 (35%), Gaps = 35/323 (10%)
Query: 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566
L D++ + A T AGKT VA I K +Y +P+KAL +
Sbjct: 50 HLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMT-----------KTIYTSPIKALSNQK 98
Query: 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQL--V 624
+ ++ + ++GD + + ++ T E I R R + V
Sbjct: 99 FRDFKETFDDVNIGL--ITGDVQINP----DANCLIMTTE----ILRSMLYRGADLIRDV 148
Query: 625 KLLIIDEIHLLHDN-RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683
+ +I DE+H ++D RG V E + I +H++ + LSAT+PN + A ++
Sbjct: 149 EFVIFDEVHYVNDQDRGVVWEEV-------IIMLPQHVKFILLSATVPNTYEFANWIGRT 201
Query: 684 LEKGLFYFDNSYRPVPLSQ-QYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHS 742
+K ++ RPVPL + ++ + + + + K +
Sbjct: 202 KQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSK 261
Query: 743 RKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802
+ A N GR + +S ++ + F
Sbjct: 262 TDNGRGGSTARGGRGGSNTRDGRGGRGNSTRG---GANRGGSRGAGAIGSNKRKFFTQDG 318
Query: 803 GMTRGDRQLVEDLFGDGHVQVLV 825
+ ++V L + ++V
Sbjct: 319 PSKKTWPEIVNYLRKRELLPMVV 341
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 93.9 bits (232), Expect = 3e-19
Identities = 42/190 (22%), Positives = 65/190 (34%), Gaps = 21/190 (11%)
Query: 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559
Q + A+ N ++CAPTG GKT V++L L K+V+ A
Sbjct: 18 QLELALPAMKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG------KVVFFANQ 70
Query: 560 KALVAEVVGNLSNRLQMYDVKVRELSGD---QTLTRQQIEETQIIVTTPEKWDIITRKSG 616
+ + S + + +V +SG Q +E II+ TP+ +K G
Sbjct: 71 IPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK-G 129
Query: 617 DRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDV 676
+ L+I DE H I +L G S LP +
Sbjct: 130 TIPSLSIFTLMIFDECHNTSKQ----------HPYNMIMFNYLDQKLGGSSGPLPQVIGL 179
Query: 677 ALFLRVNLEK 686
+ V K
Sbjct: 180 TASVGVGDAK 189
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 69.2 bits (168), Expect = 9e-12
Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 5/162 (3%)
Query: 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416
N ++ APTG GKT S + +K + + V+ A + ++ K+ +
Sbjct: 28 GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKS-VFSKYFE 86
Query: 1417 GLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDEL 1473
G RV ++G TA ++ +++E III TP+ ++ + +L I DE
Sbjct: 87 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK-GTIPSLSIFTLMIFDEC 145
Query: 1474 HLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAK 1515
H Q + + + + +++ L+ S+
Sbjct: 146 HNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGD 187
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 84.9 bits (209), Expect = 2e-16
Identities = 100/708 (14%), Positives = 194/708 (27%), Gaps = 212/708 (29%)
Query: 1222 DFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQY 1281
+ + D + + + F V++ D + + +L K+ E DH I
Sbjct: 15 QYQYKDILSVFEDAF---VDNFDCKDVQDMPKSILSKE--EIDH-------IIMSKDAVS 62
Query: 1282 FIRVVSDKWLGSQTVLPVSFRHLILPEKYP---PPTELLDLQPLPVTAL----RNPLYEA 1334
+ L Q + F +L Y P + QP +T + R+ LY
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 1335 LYQGFKHFN-----PIQTQVFTVLYNTDD--NVLVAAPTGSGKTI-----CSEFAILRNH 1382
Q F +N P ++ L NVL+ GSGKT C + +
Sbjct: 123 N-QVFAKYNVSRLQPY-LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 1383 QKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ-----GLGMRVVELTGETAMDLKLLE 1437
++ W + + + +L +D
Sbjct: 181 D--------FKIF--------------W-LNLKNCNSPETVLEMLQKLL--YQIDPNWTS 215
Query: 1438 KGQIIISTP----EKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE-------- 1485
+ + L R K + Y L ++ + Q
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYEN--CLLVLLNV-----QNAKAWNAFNLSCKI 268
Query: 1486 VIVSRMRYIASQVEN----KIRIVALSTSL--ANAKDL-GEWIGATSHGLFNFPPGVRPV 1538
++ +R + + + I + S +L K L +++ L P V
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---PREVLTT 325
Query: 1539 -PLEIHIQGVDITNFEARMQ---AMTKPTFTAIVQHA-KNEKPAL---------VFVPSR 1584
P + I I + A + T I++ + +PA VF
Sbjct: 326 NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF---P 382
Query: 1585 KYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATL--RHGVG---YL 1639
+ + L L+W + ++ + + ++ K +L + +
Sbjct: 383 PSAHIPTILLS-------------LIW-FDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 1640 H----EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAH 1695
E K + E H +V Y N
Sbjct: 429 PSIYLELKVKLENEY-------------------------ALHRSIV--DHY-----NIP 456
Query: 1696 TDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNF 1755
+ DL P LD I H E+ ++ F FL F
Sbjct: 457 KTFDSDDL-------IPPYLDQYFYSHIGHHLKNIEHPERM--TLFR-----MVFLDFRF 502
Query: 1756 NAEIVAGVIENK-----------QDAVDYLTWTFMYRR-LTQNPNYYNLQGVSHRHLSDH 1803
+E K ++ L Y+ + N Y R ++
Sbjct: 503 --------LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY------ERLVNA- 547
Query: 1804 LSELVENTISDLEASKCI-IIEEDMDLSPSNHGMIASYYYISYTTIER 1850
+ + + +L SK ++ + L + + ++ ++R
Sbjct: 548 ILDFLPKIEENLICSKYTDLLR--IALMAEDEA----IFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 82.6 bits (203), Expect = 1e-15
Identities = 98/593 (16%), Positives = 205/593 (34%), Gaps = 130/593 (21%)
Query: 418 LGQRQLLDLDTLA-FQQGGLFMANRKC-DLPEGSQR-FTNKGYEEI-HVP---------- 463
G+ Q D L+ F+ F+ N C D+ + + + + + I
Sbjct: 11 TGEHQYQYKDILSVFEDA--FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 464 -AMKHKP-----------LDPNEKLIKISEMPEWAQPAFKG---MTQLNRVQS--RVY-- 504
+ K L N K + E QP+ + Q +R+ + +V+
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 505 ------------KSAL---SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDG----S 545
+ AL A N+L+ G+GKT VA+ L + D +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 546 FNHSNYKIVYVAPMKALVAEVVGNLSNRL-QMYDVKVRELSGDQTLTR----QQIEETQI 600
+ N + ++ L+ ++ N ++R ++K+R S L R + E +
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 601 I---VTTPEKWD---------IITRKSGDRTYTQLVKLLIIDEIHLLHDNRG---PVLES 645
+ V + W+ + TR + T + I L H + ++S
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTR---FKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 646 IVARTVRQI------ETTKEHIRLVGL-SATLPNYEDVA-LFLRVNLEKGLFYFDNSYR- 696
++ + + E + R + + + ++ + + VN +K ++S
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 697 --PVPLSQQY--IGI---QVKKPLQRFQLM-NDLCYEKVVAVAGK-HQVLIFVHSRKETA 747
P + + + + P L+ D+ V+ V K H+ + KE+
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 748 KTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLP-------YGFAIH 800
+ I L + + E ++ R I+ + ++ K+ D DL+P Y H
Sbjct: 426 IS---IPSIYL--ELKVKLENEYALHRSIVDHY-NIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 801 H-AGMTRGDR-QLVEDLFGD-GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWT 857
H + +R L +F D ++ + + AW + + + + Y K
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ-LKFY---KPYIC 535
Query: 858 ELSPL------DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPI 904
+ P I+ L + E +I + +++L ++LM + I
Sbjct: 536 DNDPKYERLVNAILDFLPK--------IEENLICSKYTDL-LRIALMAEDEAI 579
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 3e-11
Identities = 83/684 (12%), Positives = 183/684 (26%), Gaps = 224/684 (32%)
Query: 542 DDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQII 601
+ G + I+ V + +D K + L++++I+ I
Sbjct: 10 ETGEHQYQYKDILSV------------FEDAFVDNFDCKDVQDMPKSILSKEEIDH---I 54
Query: 602 VTTPEK--------WDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653
+ + + W + + V+ +L N ++ I +
Sbjct: 55 IMSKDAVSGTLRLFW--TLLSKQEEMVQKFVE-------EVLRINYKFLMSPIKTEQRQP 105
Query: 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713
T+ +I Y D +F + N+ R P +++++ L
Sbjct: 106 SMMTRMYI-----EQRDRLYNDNQVFAKYNV----------SRLQPY------LKLRQAL 144
Query: 714 QRFQLMNDLCYEKVVAV-----AGKHQVLIFVHSRKETAKTARAIRDTALEND------- 761
+ K V + +GK + ++
Sbjct: 145 LELR------PAKNVLIDGVLGSGK-TWV-----------ALDVCLSYKVQCKMDFKIFW 186
Query: 762 -TLGRFLKEDSVSREILQ----------------SHTDMVKSNDLKDLLPYGFAIHHAGM 804
L ++V E+LQ S ++ + ++ L
Sbjct: 187 LNLKNCNSPETVL-EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK---- 241
Query: 805 TRGDRQL-----VEDL-----FGDGHVQVLVSTA----TLAWGVNLPAHTVIIKGTQIYN 850
+ L V++ F + ++L++T T H +
Sbjct: 242 -PYENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDH------ 293
Query: 851 PEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVS 910
L+P ++ +L + YL Q LP E +
Sbjct: 294 HSMT----LTPDEVKSLLLK-----------------------YLDCRPQDLPREVLTTN 326
Query: 911 KLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRN---PALYGLAPEVLKE------- 960
+ AE + W + ++ L +L L P ++
Sbjct: 327 PRRLSIIAESI------RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 961 -----DITL-------GERRADLVHTAATILDRNNLVKYDRKSGYFQVTDL-----GRIA 1003
I + V L + +LV+ K + + ++
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE 440
Query: 1004 SYYYISHGT-ISTYNEHLKPTMGDIELCRLFSLSEEFKYV---------TVRQDEKMEL- 1052
+ Y + H + + YN D +Y + E+M L
Sbjct: 441 NEYAL-HRSIVDHYNIPKTFDSDD------LIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 1053 -AKLLD------RVPIPVKESLEEPSAKINVLLQ-----AYISQLKLEGLSLTSDMV-FI 1099
LD ++ + + +N L Q YI + L + ++ F+
Sbjct: 494 RMVFLDFRFLEQKI-RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 1100 TQSAGRLLRALFEIVLKRGWAQLA 1123
+ L+ + + +L ++A
Sbjct: 553 PKIEENLICSKYTDLL-----RIA 571
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 3e-09
Identities = 102/736 (13%), Positives = 198/736 (26%), Gaps = 261/736 (35%)
Query: 194 LDDDMGVAVEFEEND---DDEEE--SDLDMVQEED--------EEEEEDVAEPNA-SGAM 239
+D + G +++ D E+ + D +D EE + + +A SG +
Sbjct: 7 MDFETGE-HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 240 QMGGGIDDDDESGDANEGMSLNVQDIDA--Y-WLQRKISQAFDQQIDPQQCQKLAEEVLK 296
++ + E E + V+++ Y +L I +Q P ++ E
Sbjct: 66 RLFWTLLSKQE-----EMVQKFVEEVLRINYKFLMSPIK---TEQRQPSMMTRMYIEQRD 117
Query: 297 ILAEGDDR---------EVENKL---LYHLQ------------FDKFSLI-------KFL 325
L + + KL L L+ K + K
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 326 LRNRLKVVWCTRLARAQDQEERKKIEEEMMGLGPDLAAILDQLHATRATAKERQKNLEKS 385
+ K+ W L E ++ + L +D +R+ K S
Sbjct: 178 CKMDFKIFWLN-LKNCNSPETVLEMLQ-------KLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 386 IREEARRLKDESASDGGRDRRGLVDRDADGGWLGQRQLLDLDTL-------AFQQGGLFM 438
I+ E RRL L + + LL L + AF
Sbjct: 230 IQAELRRL--------------LKSKP------YENCLLVLLNVQNAKAWNAF------- 262
Query: 439 ANRKCDLPEGSQ-----RFTN-----KGYEEIHVPAMKH-KPLDPNEKL--------IKI 479
N C + RF H+ H L P+E +
Sbjct: 263 -NLSC------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Query: 480 SEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALN 539
++P L++ N + + L
Sbjct: 316 QDLPR---------------------EVLTT--NPRRLSIIAE----------SIRDGLA 342
Query: 540 RNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL--QMY--------DVKVRELSGDQT 589
D N+K V + ++ + L +M+ +
Sbjct: 343 TWD-------NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT----IL 391
Query: 590 LTR----QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLES 645
L+ + ++V K+ ++ ++ + T + I ++
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS----------IPSIYL-------- 433
Query: 646 IVARTVRQIETTKE-HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQ-- 702
++E H +V N+ K + + P L Q
Sbjct: 434 ---ELKVKLENEYALHRSIVD---------------HYNIPKT--FDSDDLIPPYLDQYF 473
Query: 703 -QYIG--IQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALE 759
+IG ++ + +R L + + F+ + TA + L
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLD-----------FRFLEQKIRHDSTAWNASGSIL- 521
Query: 760 NDTLGRFLKEDSVSREILQSHTD---MVKSNDLKDLLP-YGFAIHHAGMTRGDRQLV--- 812
+TL + I + +V N + D LP + + T L+
Sbjct: 522 -NTLQQLKF---YKPYICDNDPKYERLV--NAILDFLPKIEENLICSKYTD----LLRIA 571
Query: 813 -----EDLFGDGHVQV 823
E +F + H QV
Sbjct: 572 LMAEDEAIFEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 8e-07
Identities = 70/548 (12%), Positives = 153/548 (27%), Gaps = 187/548 (34%)
Query: 1678 HLVVVMGTQYY-------DGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK 1730
H+ G Y ++ ++ D+ M + +L + + +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP----KSILSKE-EIDHIIMSKDA 60
Query: 1731 EYYKKFLYDAF------PVESHLHHFLHDNFN--AEIVAGVIENKQDAVDYLTWTFMYRR 1782
L+ V+ + L N+ + E +Q ++ T ++ +R
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK--TEQRQPSMM--TRMYIEQR 116
Query: 1783 LTQNPNYYNLQGVSHRHLS--DHLSELVENTISDLEASKCIIIEEDMDLSPSNHGM---- 1836
+ Y + Q + ++S +L + +L +K ++I G+
Sbjct: 117 ---DRLYNDNQVFAKYNVSRLQPYLKL-RQALLELRPAKNVLI----------DGVLGSG 162
Query: 1837 ---IASYYYISYTTIERFSS-----SLTPKTRMKGLLEVL------------ASASEYAQ 1876
+A +SY + +L + +LE+L + + +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 1877 LPIRPGE-EEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVL 1935
+ +R + +RRL+ + + N LL V L V
Sbjct: 223 IKLRIHSIQAELRRLLKSKPY-------------ENCLL--------V-----LL--NV- 253
Query: 1936 LSASRLLQAM-----VDVISSNGWLSLALLAMEVSQMV----TQGMWERDSMLLQLPHFM 1986
++ A + + + ++ L A + + + + + L +
Sbjct: 254 -QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL----LL 308
Query: 1987 KDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPN-------- 2038
K L R Q+ P RE+L + +L IA
Sbjct: 309 KYLDCRPQDLP------------------REVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 2039 --------IDMSFEVQDSENVRA----------GEDITLQVVLERDLEGRTEVGPVYSNR 2080
I+ S V + R I +L +
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI-LLSL-I------------- 395
Query: 2081 YPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLY-FMCDSY 2139
W+ V ++ K L + S V+ + T ++ +
Sbjct: 396 --------WFDV--IKSDVMVVVNK---LHKYSLVEKQPK------ESTISIPSIYLELK 436
Query: 2140 MGCDQEYA 2147
+ + EYA
Sbjct: 437 VKLENEYA 444
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 1e-06
Identities = 73/473 (15%), Positives = 132/473 (27%), Gaps = 154/473 (32%)
Query: 1074 INVLLQAYISQLKLEGLS------LTS---DMVFITQSAGRLLRALFEIVLKRGWAQLAE 1124
++V A++ + + L+ D + +++ A LF +L + ++ +
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ-EEMVQ 80
Query: 1125 KALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPK 1184
K V+ LR N F Q + +
Sbjct: 81 KF-------------VEEVLR-----IN--------YKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 1185 MGRTLHKFVHQFPKLILAAHV---QPIT--RTVLKVELTITPDFLWDDKVHG-------- 1231
L+ F K +V QP R L EL + L + G
Sbjct: 115 QRDRLYNDNQVFAKY----NVSRLQPYLKLRQALL-ELRPAKNVL----IDGVLGSGKTW 165
Query: 1232 ---------YVEP------FWVIV-EDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYE 1275
V+ FW+ + N E +L ML+K + D N+T
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE----MLQKLLYQIDP--NWTSRSDH 219
Query: 1276 PLPPQYFIRVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEAL 1335
+ I + + R L+ + Y LL L ++N
Sbjct: 220 SSNIKLRIHSIQAE-----------LRRLLKSKPY--ENCLLVLL-----NVQNA----- 256
Query: 1336 YQGFKHFNPIQTQVFTVLYNTDD----NVLVAAPTGS--------------GKTICSEFA 1377
+ + FN + + +L T + L AA T K++ ++
Sbjct: 257 -KAWNAFN-LSCK---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 1378 ILRNHQKASETGVMRAVYIAPLE-ALAKERYRD----WE-------IKFGQGLGMRVVEL 1425
R E + P ++ E RD W+ K + + L
Sbjct: 312 DCRPQDLPRE-----VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 1426 TGETA----MDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 1474
L + I P LS W + ++++LH
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHI---PTI--LLSLIWFDVIK--SDVMVVVNKLH 412
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 75.6 bits (185), Expect = 7e-14
Identities = 78/497 (15%), Positives = 152/497 (30%), Gaps = 120/497 (24%)
Query: 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559
Q +Y + N L+ PTG GKT +A++ +L K++ +AP
Sbjct: 14 QEVIYAKCKET--NCLIVLPTGLGKTLIAMMIAEYRL----------TKYGGKVLMLAPT 61
Query: 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLT--RQQIEETQIIVTTP------------ 605
K LV + + + K+ L+G+++ + ++IV TP
Sbjct: 62 KPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRI 121
Query: 606 --EKWDIIT-----RKSGDRTYTQLVKLLIIDEIHLL--------HDNRGPVLESIVART 650
E +I R G+ Y + + + L ++E I
Sbjct: 122 SLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLG 181
Query: 651 VRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPV--PLSQQYIGIQ 708
+ IE E+ V +E V + L ++ R PL++ +
Sbjct: 182 IEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLES 241
Query: 709 VKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIR----------DTAL 758
+ + +++ G H + + K AI +
Sbjct: 242 SSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYI 301
Query: 759 END----------------TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIH-- 800
+ + R K S+ + + D K + LK+++
Sbjct: 302 KKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQN 361
Query: 801 --------------------------------------HAGMTRGDRQLVEDLFGDGHVQ 822
G+++ +++L+ D F G
Sbjct: 362 SKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN 421
Query: 823 VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEG 882
VLV+T+ G+++P +++ Y P S + +Q GR GR
Sbjct: 422 VLVATSVGEEGLDVPEVDLVVF----YEPVP------SAIRSIQRRGRTGR-HMPGRVII 470
Query: 883 IIITGHSELRYYLSLMN 899
++ G + YY S
Sbjct: 471 LMAKGTRDEAYYWSSRQ 487
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 54.4 bits (130), Expect = 3e-07
Identities = 36/162 (22%), Positives = 68/162 (41%), Gaps = 19/162 (11%)
Query: 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418
N L+ PTG GKT+ A++ + ++ G + + +AP + L + + F
Sbjct: 25 NCLIVLPTGLGKTL---IAMMIAEYRLTKYGG-KVLMLAPTKPLVLQHAESFRRLFNLPP 80
Query: 1419 GMRVVELTGETAMDL--KLLEKGQIIISTPEKWDALSRRWKQRKYV--QQVSLFIIDELH 1474
++V LTGE + + K + ++I++TP+ + + VSL + DE H
Sbjct: 81 E-KIVALTGEKSPEERSKAWARAKVIVATPQTI----ENDLLAGRISLEDVSLIVFDEAH 135
Query: 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKD 1516
G V R Q +N ++ L+ S + +
Sbjct: 136 RAVGNY-----AYVFIAREYKRQAKNP-LVIGLTASPGSTPE 171
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 1e-10
Identities = 69/379 (18%), Positives = 123/379 (32%), Gaps = 71/379 (18%)
Query: 515 LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574
+ PTG+GKT+VA + + +L + + V P AL
Sbjct: 112 CIVLPTGSGKTHVA-MAAINEL-------------STPTLIVVPTLALAE---------- 147
Query: 575 QMYDVKVRELSGDQ--TLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEI 632
Q + ++ + + + E + V+T +D LLI DE+
Sbjct: 148 QWKE-RLGIFGEEYVGEFSGRIKELKPLTVST---YDSAYVN--AEKLGNRFMLLIFDEV 201
Query: 633 HLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLF--Y 690
H L A + QI +GL+AT + L+ + +F +
Sbjct: 202 HHL-----------PAESYVQIAQMSIAPFRLGLTATFEREDGRHEILKEVVGGKVFELF 250
Query: 691 FDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTA 750
D+ I V + + L + +
Sbjct: 251 PDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMAS 310
Query: 751 RAIR--DTALENDTLGRFLKEDS-----VSREILQSHTDM-----VKSNDLKDLLPYGFA 798
AL R + +S REIL+ H + N+L + F
Sbjct: 311 GYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL 370
Query: 799 IH--HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP-AHTVIIKGTQIYNPEKGA 855
I +R +R+ + + F G + +VS+ L G+++P A+ +I +
Sbjct: 371 IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI----------MS 420
Query: 856 WTELSPLDIMQMLGRAGRP 874
+ S + +Q LGR RP
Sbjct: 421 GSG-SAREYIQRLGRILRP 438
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 4e-04
Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 24/134 (17%)
Query: 1361 LVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420
+ PTGSGKT + AI + + P ALA++ W+ + G
Sbjct: 112 CIVLPTGSGKTHVAMAAI-NELST-------PTLIVVPTLALAEQ----WKERLGIFGEE 159
Query: 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480
V E +G ++ E + +ST +D+ K + L I DE+H + +
Sbjct: 160 YVGEFSG------RIKELKPLTVST---YDSAYVN--AEKLGNRFMLLIFDEVHHLPAES 208
Query: 1481 -GPVLEVIVSRMRY 1493
+ ++ ++ R
Sbjct: 209 YVQIAQMSIAPFRL 222
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 17/171 (9%)
Query: 1311 PPP----TELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPT 1366
P P +L + L+N + + GF+ PIQ Q V+ + + +L +APT
Sbjct: 21 PDPIATFQQLDQEYKINSRLLQN-ILD---AGFQMPTPIQMQAIPVMLHGRE-LLASAPT 75
Query: 1367 GSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELT 1426
GSGKT+ IL ++ + G RA+ I+P LA + +R+ K +G G R+ +
Sbjct: 76 GSGKTLAFSIPILMQLKQPANKGF-RALIISPTRELASQIHRELI-KISEGTGFRIHMIH 133
Query: 1427 GETAMDLKL---LEKG-QIIISTPEK-WDALSRRWKQRKYVQQVSLFIIDE 1472
K K I+++TP + L + + V ++DE
Sbjct: 134 KAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQD-PPGIDLASVEWLVVDE 183
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 6e-08
Identities = 56/375 (14%), Positives = 98/375 (26%), Gaps = 102/375 (27%)
Query: 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566
L +L GAGKT + IL + + + +AP + +++E+
Sbjct: 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAE----------CARRRLRTLVLAPTRVVLSEM 53
Query: 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKL 626
+ + G I +T + + T ++
Sbjct: 54 KEAFHGLDVKFHTQAFSAHGSGR--------EVIDAMCHA---TLTYRMLEPTRVVNWEV 102
Query: 627 LIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEK 686
+I+DE H L SI AR + ++AT P
Sbjct: 103 IIMDEAHFLD------PASIAARGWAAHRARANESATILMTATPPGTS------------ 144
Query: 687 GLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKET 746
F +S + Q I P + + +D K F+ S +
Sbjct: 145 --DEFPHSNGEIEDVQTDI------PSEPWNTGHDWILAD------KRPTAWFLPSIRAA 190
Query: 747 AKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTR 806
A ++R ++R+ + +K
Sbjct: 191 NVMAASLRK---------AGKSVVVLNRKTFEREYPTIKQKKPD---------------- 225
Query: 807 GDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGT---QIYNPEKGAWTELSPLD 863
+++T G NL V+ T + E PL
Sbjct: 226 ----------------FILATDIAEMGANLCVERVLDCRTAFKPVLVDEGRKVAIKGPLR 269
Query: 864 I-----MQMLGRAGR 873
I Q GR GR
Sbjct: 270 ISASSAAQRRGRIGR 284
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 3e-07
Identities = 50/341 (14%), Positives = 96/341 (28%), Gaps = 96/341 (28%)
Query: 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572
+ + APTG GKT ++T L K V P LV + + L
Sbjct: 38 SFTMVAPTGVGKTTFGMMTALWLA-----------RKGKKSALVFPTVTLVKQTLERLQ- 85
Query: 573 RLQMYDVKVRELSG-------DQTLTRQQIEETQIIVTTP----EKWDIITRKSGDRTYT 621
+L VK+ ++ + ++ I+V + + + +++K
Sbjct: 86 KLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKR------ 139
Query: 622 QLVKLLIIDEIHLLHDNRGPVLES--IVARTVRQIETTKEHIRLVGLSATLPN--YEDVA 677
+ +D++ D VL++ + + + +E IR S YE
Sbjct: 140 --FDFVFVDDV----DA---VLKASRNIDTLLMMVGIPEEIIRKA-FSTIKQGKIYERPK 189
Query: 678 LFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL-------QRFQLMNDLCYEKVVAV 730
L L + + V + + EK+V +
Sbjct: 190 NLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSRS--KEKLVEL 247
Query: 731 AGKH--QVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSND 788
+LIF +E L +LK
Sbjct: 248 LEIFRDGILIFA-QTEEEG-------------KELYEYLKRF------------------ 275
Query: 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTAT 829
F + G T + + + F G + +L+
Sbjct: 276 -------KF---NVGETWSEFEKNFEDFKVGKINILIGVQA 306
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Length = 677 | Back alignment and structure |
|---|
Score = 51.5 bits (122), Expect = 3e-06
Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 8/131 (6%)
Query: 795 YGFAIHHAGMTRGDRQLVEDLFGDGH--VQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE 852
A+ + + G + F D + ++LV+T + G+NL +I +
Sbjct: 345 LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSIN 404
Query: 853 KGAWTELSPLD---IMQMLGRAGRPQYDSYGEGIIITGHSE-LRYYLSLMNQQL-PIESQ 907
+ EL P+ +Q+ GRAGR + EG + T + E L ++ + + PI +
Sbjct: 405 EKGERELEPITTSQALQIAGRAGRFSSR-FKEGEVTTMNHEDLSLLKEILKRPVDPIRAA 463
Query: 908 FVSKLADQLNA 918
+ A+Q+
Sbjct: 464 GLHPTAEQIEM 474
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 Length = 237 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 34/159 (21%), Positives = 54/159 (33%), Gaps = 45/159 (28%)
Query: 515 LLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574
+ PTG+GKT+VA + L+ VV L+
Sbjct: 112 CIVLPTGSGKTHVA----------------------MAAINELSTPTLI--VVPTLALAE 147
Query: 575 QMYDVKVRELSGDQ--TLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEI 632
Q + ++ + + + E + V+T +D LLI DE+
Sbjct: 148 QWKE-RLGIFGEEYVGEFSGRIKELKPLTVST---YDSAYVN--AEKLGNRFMLLIFDEV 201
Query: 633 HLLHDNRGPVLESIVARTVRQI-ETTKEHIRLVGLSATL 670
H L P A + QI + + RL GL+AT
Sbjct: 202 HHL-----P------AESYVQIAQMSIAPFRL-GLTATF 228
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 6e-06
Identities = 40/264 (15%), Positives = 70/264 (26%), Gaps = 55/264 (20%)
Query: 503 VYKSALSSADNILLCAPTGAGKTNVAVLT-ILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561
V + ++ GAGKT IL + + + +AP +
Sbjct: 11 VDEDIFRKKRLTIMDLHPGAGKT-----KRILPSIVREALLRR------LRTLILAPTRV 59
Query: 562 LVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYT 621
+ AE+ L Y + + + T + T
Sbjct: 60 VAAEMEEALRGLPIRYQT--------PAVKSDHTGREIVDLMCHA---TFTTRLLSSTRV 108
Query: 622 QLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLR 681
L+++DE H S+ AR + ++AT P
Sbjct: 109 PNYNLIVMDEAHFTD------PCSVAARGYISTRVEMGEAAAIFMTATPPGST------- 155
Query: 682 VNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVH 741
F S P+ ++ I + F + D + + FV
Sbjct: 156 -------DPFPQSNSPIEDIEREIPERSWN--TGFDWITDYQ----------GKTVWFVP 196
Query: 742 SRKETAKTARAIRDTALENDTLGR 765
S K A +R + L R
Sbjct: 197 SIKAGNDIANCLRKSGKRVIQLSR 220
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 7e-06
Identities = 84/483 (17%), Positives = 166/483 (34%), Gaps = 94/483 (19%)
Query: 473 NEKLIK-ISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADN-ILLCAPTGAGKTNVAVL 530
++++ K I+ M F G+T VQ + K LSS D+ ++ A TG GKT ++
Sbjct: 80 DKEIHKAITRM------EFPGLTP---VQQKTIKPILSSEDHDVIARAKTGTGKTFAFLI 130
Query: 531 TILQQLALNRNDDGSFNHSNYKIVYVAPMKAL---VAEVVGNL-SNRLQMYDVKVRELSG 586
I Q L + D + K V VAP + L + V + + L G
Sbjct: 131 PIFQHLINTKFD----SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVG 186
Query: 587 DQTLTRQQI----EETQIIVTTPEK-WDIITRKSGDRTYTQLVKLLIIDEI-HLLHDNRG 640
I++ TP + D++ + S + + V ++DE LL
Sbjct: 187 GTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNK--FFRFVDYKVLDEADRLLEIGFR 244
Query: 641 PVLESIVARTVRQIETTKEHIRLVGLSATLPNY-EDVA-LFLRVNLEKGLFYFD----NS 694
LE+I + + ++I+ + SATL + + +A + +K + D N
Sbjct: 245 DDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMN---KKECLFLDTVDKNE 301
Query: 695 YRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIR 754
Q + + +K + +++ ++ +IF + K T+
Sbjct: 302 PEAHERIDQSV-VISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSI-- 358
Query: 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIH--HAGMTRGDRQLV 812
LK+ I H +T+ R +
Sbjct: 359 ----------------------------------LKNEFKKDLPILEFHGKITQNKRTSL 384
Query: 813 EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ---MLG 869
F +LV T A G++ P +++ P ++ +G
Sbjct: 385 VKRFKKDESGILVCTDVGARGMDFPNVHEVLQ----IGV---------PSELANYIHRIG 431
Query: 870 RAGRPQYDSYGEGIIITGHSELRYYLSLMNQ-QLPIESQFVSKLADQLNAEIVLGTVQNA 928
R R G ++ EL + L + + I Q + ++++ +E++ +
Sbjct: 432 RTAR--SGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEP 489
Query: 929 KEA 931
++
Sbjct: 490 EDI 492
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 8e-06
Identities = 59/331 (17%), Positives = 111/331 (33%), Gaps = 87/331 (26%)
Query: 518 APTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL---VAEVVGNLSNRL 574
+ +G GKT VL +L Q+ + + ++P L +V+ +
Sbjct: 71 SQSGTGKTAAFVLAMLSQVEPANK--------YPQCLCLSPTYELALQTGKVIEQMGKF- 121
Query: 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEK-WDIITRKSGDRTY-TQLVKLLIIDEI 632
++K+ L R Q QI++ TP D ++ + + +K+ ++DE
Sbjct: 122 -YPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL---KFIDPKKIKVFVLDEA 177
Query: 633 HLLHDNRG--PVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALF--------LRV 682
++ +G I + +++ SAT + V F +
Sbjct: 178 DVMIATQGHQDQSIRI-------QRMLPRNCQMLLFSATFE--DSVWKFAQKVVPDPNVI 228
Query: 683 NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHS 742
L++ D + Q Y + ++FQ + +L Y + +A Q +IF H+
Sbjct: 229 KLKREEETLDT------IKQYY--VLCSSRDEKFQALCNL-YG-AITIA---QAMIFCHT 275
Query: 743 RKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802
RK L L ++ +L
Sbjct: 276 RKTA--------------SWLAAELSKEGHQVALL-----------------------SG 298
Query: 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
M R V + F +G +VLV+T A G
Sbjct: 299 EMMVEQRAAVIERFREGKEKVLVTTNVCARG 329
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 2e-05
Identities = 59/331 (17%), Positives = 111/331 (33%), Gaps = 87/331 (26%)
Query: 518 APTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL---VAEVVGNLSNRL 574
+ +G GKT VL +L Q+ + + ++P L +V+ +
Sbjct: 138 SQSGTGKTAAFVLAMLSQVEPANK--------YPQCLCLSPTYELALQTGKVIEQMGKF- 188
Query: 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEK-WDIITRKSGDRTY-TQLVKLLIIDEI 632
++K+ L R Q QI++ TP D ++ + + +K+ ++DE
Sbjct: 189 -YPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL---KFIDPKKIKVFVLDEA 244
Query: 633 HLLHDNRG--PVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALF--------LRV 682
++ +G I + +++ SAT + V F +
Sbjct: 245 DVMIATQGHQDQSIRI-------QRMLPRNCQMLLFSATFE--DSVWKFAQKVVPDPNVI 295
Query: 683 NLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHS 742
L++ D + Q Y + ++FQ + +L Y + +A Q +IF H+
Sbjct: 296 KLKREEETLDT------IKQYY--VLCSSRDEKFQALCNL-YG-AITIA---QAMIFCHT 342
Query: 743 RKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA 802
RK L L ++ +L
Sbjct: 343 RKTA--------------SWLAAELSKEGHQVALL-----------------------SG 365
Query: 803 GMTRGDRQLVEDLFGDGHVQVLVSTATLAWG 833
M R V + F +G +VLV+T A G
Sbjct: 366 EMMVEQRAAVIERFREGKEKVLVTTNVCARG 396
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 42/250 (16%), Positives = 70/250 (28%), Gaps = 55/250 (22%)
Query: 507 ALSSADNILLCAPTGAGKTNVAVLT-ILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565
L +L G+GKT IL Q+ D + +AP + + AE
Sbjct: 17 MLRKRQMTVLDLHPGSGKT-----RKILPQII----KDAIQQR--LRTAVLAPTRVVAAE 65
Query: 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVK 625
+ L Y R+ + V +T +
Sbjct: 66 MAEALRGLPVRYQTSAV--------QREHQGNEIVDVMCH---ATLTHRLMSPNRVPNYN 114
Query: 626 LLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLE 685
L ++DE H SI AR + + ++AT P
Sbjct: 115 LFVMDEAHFTD------PASIAARGYIATKVELGEAAAIFMTATPPGTT----------- 157
Query: 686 KGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKE 745
F +S P+ Q I P + + + E + + FV S K
Sbjct: 158 ---DPFPDSNAPIHDLQDEI------PDRAWSSGYEWITE------YAGKTVWFVASVKM 202
Query: 746 TAKTARAIRD 755
+ A ++
Sbjct: 203 GNEIAMCLQR 212
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 11/150 (7%)
Query: 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA 1385
L L ++ GF+ + IQ + + D VL A +G+GKT F+I +
Sbjct: 21 LDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHD-VLAQAQSGTGKT--GTFSIAALQRID 77
Query: 1386 SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAM--DLKLLEKGQIII 1443
+ +A+ +AP LA + + + ++V G T+ D + L QI++
Sbjct: 78 TSVKAPQALMLAPTRELALQIQKVVM-ALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVV 136
Query: 1444 STPEK-WDALSRRWKQRKYVQQVSLFIIDE 1472
TP + +D + RR + ++ +FI+DE
Sbjct: 137 GTPGRVFDNIQRRRFR---TDKIKMFILDE 163
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 6e-05
Identities = 84/482 (17%), Positives = 166/482 (34%), Gaps = 92/482 (19%)
Query: 473 NEKLIK-ISEMPEWAQPAFKGMTQLNRVQSRVYKSALSSADN-ILLCAPTGAGKTNVAVL 530
++++ K I+ M F G+T VQ + K LSS D+ ++ A TG GKT ++
Sbjct: 29 DKEIHKAITRM------EFPGLTP---VQQKTIKPILSSEDHDVIARAKTGTGKTFAFLI 79
Query: 531 TILQQLALNRNDDGSFNHSNYKIVYVAPMKAL---VAEVVGNL-SNRLQMYDVKVRELSG 586
I Q L + D K V VAP + L + V + + L G
Sbjct: 80 PIFQHLINTKFDS----QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVG 135
Query: 587 DQTLTRQQIEE-----TQIIVTTPEK-WDIITRKSGDRTYTQLVKLLIIDEI-HLLHDNR 639
R + + I++ TP + D++ + S + + V ++DE LL
Sbjct: 136 GTDF-RAAMNKMNKLRPNIVIATPGRLIDVLEKYSNK--FFRFVDYKVLDEADRLLEIGF 192
Query: 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNY-EDVA-LFLRVNLEKGLFYFDNSYRP 697
LE+I + + ++I+ + SATL + + +A + L D +
Sbjct: 193 RDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 252
Query: 698 VP--LSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRD 755
+ Q + +K + +++ ++ +IF + K T+
Sbjct: 253 AHERIDQSVV--ISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSI--- 307
Query: 756 TALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIH--HAGMTRGDRQLVE 813
LK+ I H +T+ R +
Sbjct: 308 ---------------------------------LKNEFKKDLPILEFHGKITQNKRTSLV 334
Query: 814 DLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQ---MLGR 870
F +LV T A G++ P +++ P ++ +GR
Sbjct: 335 KRFKKDESGILVCTDVGARGMDFPNVHEVLQ----IGV---------PSELANYIHRIGR 381
Query: 871 AGRPQYDSYGEGIIITGHSELRYYLSLMNQ-QLPIESQFVSKLADQLNAEIVLGTVQNAK 929
R G ++ EL + L + + I Q + ++++ +E++ + +
Sbjct: 382 TAR--SGKEGSSVLFICKDELPFVRELEDAKNIVIAKQEKYEPSEEIKSEVLEAVTEEPE 439
Query: 930 EA 931
+
Sbjct: 440 DI 441
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 8e-05
Identities = 74/363 (20%), Positives = 126/363 (34%), Gaps = 96/363 (26%)
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+Q A++ D IL A G GKT V+ L+++ N + + + P
Sbjct: 47 IQEEAIPVAITGRD-ILARAKNGTGKTAAFVIPTLEKVKPKLNK--------IQALIMVP 97
Query: 559 MKAL---VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQI---EETQIIVTTPEK-WDII 611
+ L ++VV L + +G L + E I+V TP + D+
Sbjct: 98 TRELALQTSQVVRTLGKHC---GISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLA 154
Query: 612 TRKSGDRTYTQLVKLLIIDEI-HLLHDNRG--PVLESIVARTVRQIETTKEHIRLVGLSA 668
+RK D L I+DE +L +R ++E I + + + SA
Sbjct: 155 SRKVAD---LSDCSLFIMDEADKML--SRDFKTIIEQI-------LSFLPPTHQSLLFSA 202
Query: 669 TLPNYEDVALF--------LRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMN 720
T P V F +NL + L + QY V++ Q+ +N
Sbjct: 203 TFP--LTVKEFMVKHLHKPYEINLMEEL--------TLKGITQYY-AFVEER-QKLHCLN 250
Query: 721 DLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSH 780
L + K+ +Q +IF +S + L + + + S
Sbjct: 251 TL-FSKLQI----NQAIIFCNSTNRV--------------ELLAKKITDLGYSCYYS--- 288
Query: 781 TDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHT 840
HA M + +R V F G V+ LV + L G+++ A
Sbjct: 289 --------------------HARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVN 328
Query: 841 VII 843
V+I
Sbjct: 329 VVI 331
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 2e-04
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 19/129 (14%)
Query: 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFA--ILRNHQ 1383
L + + A+ GF+ IQ +V + N + N++ A TGSGKT + FA ++ +
Sbjct: 13 LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKT--ASFAIPLI---E 67
Query: 1384 KASETGVMRAVYIAPLEALA---KERYRDWEI-KFGQGLGMRVVELTGETAMD--LKLLE 1437
+E + A+ + P LA + EI +++ ++ G A+ +K L+
Sbjct: 68 LVNENNGIEAIILTPTRELAIQVAD-----EIESLKGNKNLKIAKIYGGKAIYPQIKALK 122
Query: 1438 KGQIIISTP 1446
I++ TP
Sbjct: 123 NANIVVGTP 131
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 2e-04
Identities = 71/360 (19%), Positives = 144/360 (40%), Gaps = 89/360 (24%)
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+Q R + D +L A +G GKT + LQ++ + + + +AP
Sbjct: 47 IQQRAIMPIIEGHD-VLAQAQSGTGKTGTFSIAALQRIDTSVK--------APQALMLAP 97
Query: 559 MKAL---VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEK-WDIIT 612
+ L + +VV L+ + D+KV G + + + QI+V TP + +D I
Sbjct: 98 TRELALQIQKVVMALAFHM---DIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQ 154
Query: 613 RKSGDRTYTQLVKLLIIDEI-HLLHDNRG--PVLESIVARTVRQIETTKEHIRLVGLSAT 669
R+ T +K+ I+DE +L + G + I ++V LSAT
Sbjct: 155 RRRFR---TDKIKMFILDEADEML--SSGFKEQIYQI-------FTLLPPTTQVVLLSAT 202
Query: 670 LPNY-EDVA-LFLR----VNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLC 723
+PN +V F+R + ++K + + Q Y + V++ +++ + DL
Sbjct: 203 MPNDVLEVTTKFMRNPVRILVKKDELTLEG------IKQFY--VNVEEEEYKYECLTDL- 253
Query: 724 YEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM 783
Y+ + Q +IF ++R++ + L L+ D + +
Sbjct: 254 YDSISV----TQAVIFCNTRRKV--------------EELTTKLRNDKFTVSAI------ 289
Query: 784 VKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVII 843
++ + + +R + F G ++L+ST LA G+++ +++I
Sbjct: 290 -----------------YSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI 332
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 13/128 (10%)
Query: 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAI-----LR 1380
L + L + ++ IQ Q + D VL AA TGSGKT+ F + L
Sbjct: 32 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKD-VLGAAKTGSGKTLA--FLVPVLEALY 88
Query: 1381 NHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEK 1438
Q S G+ + I+P LA + + K G+ + G + + +
Sbjct: 89 RLQWTSTDGL-GVLIISPTRELAYQTFEVLR-KVGKNHDFSAGLIIGGKDLKHEAERINN 146
Query: 1439 GQIIISTP 1446
I++ TP
Sbjct: 147 INILVCTP 154
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 4e-04
Identities = 73/366 (19%), Positives = 143/366 (39%), Gaps = 99/366 (27%)
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
+Q R + D ++ A +G GKT ++ILQQ+ L+ + + +AP
Sbjct: 66 IQQRAILPCIKGYD-VIAQAQSGTGKTATFAISILQQIELDLK--------ATQALVLAP 116
Query: 559 MKAL---VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ----QIEETQIIVTTPEK-WDI 610
+ L + +VV L + + G + + Q+E IIV TP + +D+
Sbjct: 117 TRELAQQIQKVVMALGDYM---GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDM 173
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHD---NRG--PVLESIVARTVRQIETTKEHIRLVG 665
+ R+ + +K+ ++DE D +RG + I + + ++V
Sbjct: 174 LNRRYLS---PKYIKMFVLDEA----DEMLSRGFKDQIYDI-------FQKLNSNTQVVL 219
Query: 666 LSATLPN--YEDVALFLR----VNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLM 719
LSAT+P+ E F+R + ++K + + Q Y I V++ + +
Sbjct: 220 LSATMPSDVLEVTKKFMRDPIRILVKKEELTLEG------IRQFY--INVEREEWKLDTL 271
Query: 720 NDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQS 779
DL YE + Q +IF+++R++ D L +
Sbjct: 272 CDL-YETLTI----TQAVIFINTRRKV--------------DWLTEKMHAR--------- 303
Query: 780 HTDMVKSNDLKDLLPYGFAIH--HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP 837
F + H M + +R ++ F G +VL++T LA G+++
Sbjct: 304 ----------------DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQ 347
Query: 838 AHTVII 843
+++I
Sbjct: 348 QVSLVI 353
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 35/184 (19%)
Query: 499 VQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558
VQ + D +++ A +G GKT V L L L +I+ +AP
Sbjct: 50 VQLKAIPLGRCGLD-LIVQAKSGTGKTCVFSTIALDSLVLENLS--------TQILILAP 100
Query: 559 MKAL---VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEK-WDIIT 612
+ + + V+ + + M ++ G L++ ++++ I V +P + +I
Sbjct: 101 TREIAVQIHSVITAIGIK--MEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIE 158
Query: 613 RKSGDRTYTQLVKLLIIDEI-HLLHDNRGPVLESIVARTVRQIET----TKEHIRLVGLS 667
+ ++L I+DE LL G E QI +++ +S
Sbjct: 159 LDYLN---PGSIRLFILDEADKLL--EEGSFQE--------QINWIYSSLPASKQMLAVS 205
Query: 668 ATLP 671
AT P
Sbjct: 206 ATYP 209
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 9e-04
Identities = 68/352 (19%), Positives = 124/352 (35%), Gaps = 101/352 (28%)
Query: 499 VQSRVYKSALSSADNILLC-APTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557
VQ A+ D +LC A +G GKT V VL LQQL ++ +
Sbjct: 34 VQHECIPQAILGMD--VLCQAKSGMGKTAVFVLATLQQLEPVTGQ--------VSVLVMC 83
Query: 558 PMKAL---VAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ----QIEETQIIVTTPEK-WD 609
+ L +++ S M +VKV G ++ + + I+V TP +
Sbjct: 84 HTRELAFQISKEYERFSKY--MPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILA 141
Query: 610 IITRKSGDRTYTQLVKLLIIDEIHLLHDNRG--PVLESIVART--VRQIETTKEHIRLVG 665
+ KS + + +K I+DE + + ++ I T +Q+ +
Sbjct: 142 LARNKSLN---LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQV---------MM 189
Query: 666 LSATLPNYEDVALF--------LRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQ 717
SATL +++ + + ++ D + + QQY +++ K ++ +
Sbjct: 190 FSATLS--KEIRPVCRKFMQDPMEIFVD------DETKLTLHGLQQYY-VKL-KDNEKNR 239
Query: 718 LMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREIL 777
+ DL + + +QV+IFV S + L + L E
Sbjct: 240 KLFDL-LDVLEF----NQVVIFVKSVQRC--------------IALAQLLVEQ------- 273
Query: 778 QSHTDMVKSNDLKDLLPYGFAIH--HAGMTRGDRQLVEDLFGDGHVQVLVST 827
F H GM + +R F D ++LV+T
Sbjct: 274 ------------------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 307
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2158 | |||
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 100.0 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 100.0 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 100.0 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 100.0 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 100.0 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 100.0 | |
| 3im1_A | 328 | Protein SNU246, PRE-mRNA-splicing helicase BRR2; A | 100.0 | |
| 2q0z_X | 339 | Protein Pro2281; SEC63, SEC, NESG, HR1979, structu | 100.0 | |
| 2q0z_X | 339 | Protein Pro2281; SEC63, SEC, NESG, HR1979, structu | 100.0 | |
| 3im1_A | 328 | Protein SNU246, PRE-mRNA-splicing helicase BRR2; A | 100.0 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 100.0 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 100.0 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 100.0 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 100.0 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 100.0 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 100.0 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 100.0 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 100.0 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 100.0 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 100.0 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 100.0 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 100.0 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 100.0 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 100.0 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 100.0 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 100.0 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 100.0 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 100.0 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 100.0 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 100.0 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 100.0 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 100.0 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 100.0 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 100.0 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 100.0 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 100.0 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 100.0 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 100.0 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 100.0 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 100.0 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 100.0 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 100.0 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 100.0 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 99.98 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.97 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.97 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.97 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.97 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.97 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.97 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.97 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.97 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.97 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.97 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.97 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.97 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.97 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.97 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.97 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.97 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.97 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.97 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.97 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.97 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.97 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.96 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.96 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.96 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.96 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.96 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.96 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.96 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.96 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.96 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.95 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.95 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.95 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.95 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.95 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.95 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.95 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.95 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.95 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.95 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.95 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.95 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.94 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.94 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.92 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.91 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.91 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.91 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.91 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.9 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.9 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.89 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 99.89 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.89 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.89 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.89 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 99.88 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.88 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.88 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.88 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.88 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 99.88 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.88 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.88 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.88 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.87 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.87 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 99.87 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.87 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.87 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.87 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.86 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.86 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.86 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.86 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.86 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.86 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.86 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.85 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.85 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.85 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.85 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.84 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.84 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.84 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.83 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.83 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.83 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.8 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.78 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.78 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.76 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.73 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.72 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.72 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.71 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.71 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.7 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.7 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.69 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.69 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.69 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.68 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.68 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.67 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.66 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.66 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.66 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.66 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.66 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.64 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.64 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.64 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.63 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.62 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.62 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.61 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.57 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.57 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.34 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 99.52 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.52 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 99.52 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.26 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.11 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.02 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 97.87 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 97.7 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 97.52 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 97.41 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 97.31 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 97.31 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 97.24 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 97.14 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 97.13 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 97.09 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 97.05 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 96.88 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 96.86 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 96.86 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 96.7 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 95.71 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 95.35 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 95.23 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 95.12 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 94.99 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 94.79 | |
| 1wcn_A | 70 | Transcription elongation protein NUSA; RNA-binding | 94.63 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 94.61 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 94.45 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 94.3 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 94.26 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 93.62 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 93.43 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 92.91 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 92.61 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 92.51 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 92.29 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 92.23 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 92.22 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 91.96 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 91.91 | |
| 3u4q_A | 1232 | ATP-dependent helicase/nuclease subunit A; helicas | 91.76 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 91.58 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 91.55 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 91.37 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 91.22 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 91.19 | |
| 3u4q_A | 1232 | ATP-dependent helicase/nuclease subunit A; helicas | 91.16 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 91.08 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 91.07 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 91.0 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 90.99 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 90.97 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 90.97 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 90.79 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 90.69 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 90.67 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 90.55 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 90.5 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 90.27 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 90.27 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 90.23 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 90.19 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 90.03 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 89.96 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 89.94 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 89.87 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 89.85 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 89.7 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 89.59 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 89.55 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 89.47 | |
| 3i4u_A | 270 | ATP-dependent RNA helicase DHX8; splicing, ATP-bin | 89.4 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 89.37 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 89.35 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 89.33 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 88.97 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 88.89 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 88.83 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 88.78 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 88.63 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 88.6 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 88.51 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 88.37 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 88.37 | |
| 2a1j_A | 63 | DNA repair endonuclease XPF; XPF, xeroderma pigmen | 87.96 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 87.79 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 87.77 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 87.59 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 87.35 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 87.34 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 87.02 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 86.91 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 86.87 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 86.76 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 86.69 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 86.62 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 86.61 | |
| 2kz3_A | 83 | Putative uncharacterized protein RAD51L3; RAD51D, | 86.51 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 86.45 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 86.43 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 86.32 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 86.28 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 86.22 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 86.15 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 86.12 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 85.98 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 85.85 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 85.58 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 85.48 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 85.47 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 85.46 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 85.42 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 85.3 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 85.21 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 85.16 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 85.11 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 85.1 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 85.06 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 85.02 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 84.98 | |
| 1z00_B | 84 | DNA repair endonuclease XPF; helix-hairpin-helix, | 84.88 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 84.85 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 84.74 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 84.73 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 84.71 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 84.66 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 84.39 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 84.34 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 84.33 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 84.29 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 84.13 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 84.01 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 83.99 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 83.92 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 83.92 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 83.86 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 83.78 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 83.59 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 83.58 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 83.57 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 83.54 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 83.52 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 83.39 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 83.36 | |
| 2a1j_A | 63 | DNA repair endonuclease XPF; XPF, xeroderma pigmen | 83.14 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 83.05 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 83.0 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 82.92 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 82.85 | |
| 1wcn_A | 70 | Transcription elongation protein NUSA; RNA-binding | 82.82 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 82.52 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 82.48 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 82.34 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 81.94 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 81.92 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 81.74 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 81.42 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 81.16 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 81.15 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 81.11 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 80.97 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 80.6 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 80.44 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 80.33 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 80.16 | |
| 1z00_B | 84 | DNA repair endonuclease XPF; helix-hairpin-helix, | 80.07 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 80.03 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 80.03 |
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-294 Score=3113.07 Aligned_cols=1722 Identities=64% Similarity=1.089 Sum_probs=1663.6
Q ss_pred CCccccccccccccccCCcccccccccCCCCCcccccCcceEEecCCCCCCCCCCCCcccccCCCChhhHhhcCCCCCCC
Q 000114 418 LGQRQLLDLDTLAFQQGGLFMANRKCDLPEGSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLN 497 (2158)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~lp~~~~~~f~g~~~l~ 497 (2158)
.+|++.+|||++.|+||+|+|+|+|+.+|+||.+..+++|||++||++...+...++.++++++||+|++.+|+||++||
T Consensus 2 ~~p~~~~dl~~l~~~~~~~~~~~~~~~lp~~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~Lp~~~~~~f~g~~~ln 81 (1724)
T 4f92_B 2 LAPRQVLDLEDLVFTQGSHFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKTLN 81 (1724)
T ss_dssp CCCCCCCCHHHHSCTTGGGCCCCCCCCCCSCCCEEECSSEEEEEECCCCCCCCCSSCCCCBTTTSCGGGSTTCTTCSBCC
T ss_pred CCccceecHhhhccccccccccCCceeCCCCCeecccCCcceEecCCCCCCCCCCcCCccchHhcCHHHHHhcCCCCCCC
Confidence 46889999999999999999999999999999999999999999999998888889999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccC
Q 000114 498 RVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY 577 (2158)
Q Consensus 498 ~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~ 577 (2158)
++|+++++.++++++|+|||||||||||++|+++|++.+.++....+....+++|+|||+|+||||+|+++.|+++++.+
T Consensus 82 ~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~ 161 (1724)
T 4f92_B 82 RIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATY 161 (1724)
T ss_dssp HHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999988766556666778999999999999999999999999999
Q ss_pred CcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhc
Q 000114 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT 657 (2158)
Q Consensus 578 gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~ 657 (2158)
|++|+.++||.+.+++....++|+|||||+||.++|++.+..++++|++|||||+|+++|+||+++|.+++|+++.....
T Consensus 162 gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~ 241 (1724)
T 4f92_B 162 GITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMT 241 (1724)
T ss_dssp TCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHHHHhC
Confidence 99999999999988888889999999999999999998777789999999999999999999999999999999988888
Q ss_pred cccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEE
Q 000114 658 KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVL 737 (2158)
Q Consensus 658 ~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vL 737 (2158)
+.++|+||||||+||++++++||+..+..++++|+.++||+|+.++++++.......+...++..+++.+.+...++|+|
T Consensus 242 ~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~L 321 (1724)
T 4f92_B 242 QEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL 321 (1724)
T ss_dssp TCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEE
T ss_pred CCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEE
Confidence 89999999999999999999999988778899999999999999999999998888888899999999888888889999
Q ss_pred EEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHh
Q 000114 738 IFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFG 817 (2158)
Q Consensus 738 VFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~ 817 (2158)
|||+||+.|+.+|+.|.+.....+....+.+......+.+........+..|++++++||++|||||++.+|..||+.|+
T Consensus 322 VF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~ 401 (1724)
T 4f92_B 322 VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFA 401 (1724)
T ss_dssp EECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHH
Confidence 99999999999999999988777777777777777777788888888999999999999999999999999999999999
Q ss_pred CCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHh
Q 000114 818 DGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSL 897 (2158)
Q Consensus 818 ~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~l 897 (2158)
+|.++|||||+|||||||+|+++|||++++.||+..|++.++|+.+|+||+|||||+|+|..|.+|+++++++..+|.++
T Consensus 402 ~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 402 DKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSL 481 (1724)
T ss_dssp TTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHH
T ss_pred CCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHHHH
Q 000114 898 MNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAAT 977 (2158)
Q Consensus 898 l~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~ 977 (2158)
++++.||||+|...+.|+||+||++|++.+.+++++||++||+|+||.+||.+|++..++...|+.+.+++.++|++|+.
T Consensus 482 l~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~ 561 (1724)
T 4f92_B 482 LNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAAL 561 (1724)
T ss_dssp TTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988777888999999999999999
Q ss_pred HHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhh
Q 000114 978 ILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLD 1057 (2158)
Q Consensus 978 ~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l~~ 1057 (2158)
.|+++|||.+|+++|.+.+|++||+||+|||++.||+.|++.+++.+++.++|+++|.|+||+++++|++|+.+|++|.+
T Consensus 562 ~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~~E~~~l~~l~~ 641 (1724)
T 4f92_B 562 MLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLE 641 (1724)
T ss_dssp HHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCGGGHHHHHHHHH
T ss_pred HHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCCcCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCChhHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHccc
Q 000114 1058 RVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRM 1137 (2158)
Q Consensus 1058 ~~~~~~~~~~~~~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~ri~~a~~ei~~~~~~~~~~~~~~~l~~~v~~~~ 1137 (2158)
++|+|+++++++++.|+|+|||+|||++++++|+|.+|+.||.|+|.||+||++|||..+||+..+.++++|||||++|+
T Consensus 642 ~~~~~~~~~~~~~~~Kv~~Llq~~i~~~~~~~~~l~~D~~~i~~~a~ri~ra~~ei~~~~~~~~~~~~~l~l~k~i~~~~ 721 (1724)
T 4f92_B 642 RVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQLAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRM 721 (1724)
T ss_dssp HSSSCCCSCCSSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTS
T ss_pred cCCCCcCCCCCChHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccCCCCHHHHHHHHhCCCCchhhccCChHHhhhhhcCchhHHHHHHHHhcCCcceEEEEEeeccCceEEEEE
Q 000114 1138 WSVQTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQFPKLILAAHVQPITRTVLKVEL 1217 (2158)
Q Consensus 1138 w~~~~~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~P~~~~~~~~~p~~~~~~~~~l 1217 (2158)
|++++||+||+++|++++++|+++|++|+++.++++.|+++++++|++|+.|++++++||++++++++||||+++++|++
T Consensus 722 w~~~~~L~q~~~i~~~~~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~g~~i~~~~~~~P~~~~~~~~~p~~~~~~~~~~ 801 (1724)
T 4f92_B 722 WQSMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKVEL 801 (1724)
T ss_dssp CTTSCGGGGSTTSCHHHHHHHHTSSCCGGGGGGCCHHHHHHHHTCSTTHHHHHHHHTTSCCEEEEEEEEESSSSEEEEEE
T ss_pred CCCCCceecCCCCCHHHHHHHHhcCCCHHHHHhCCHHHHHHHHCCchHHHHHHHHHHHCCCceEEEEEEecCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcccCCCCCCcccEEEEEEeCCCCeEeeeehhhhhccccccccEEEEEEeccCCCCCeEEEEEecccccCCCccc
Q 000114 1218 TITPDFLWDDKVHGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVL 1297 (2158)
Q Consensus 1218 ~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSd~wlg~e~~~ 1297 (2158)
+|+|+|.|++++||..|+|||||||++++.|||+++|.+++++.+++|.++|++|+.+|+||+|+|+++||+|+||++.+
T Consensus 802 ~~~~~~~w~~~~h~~~~~~~~~v~d~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~~~i~~~sd~w~~~~~~~ 881 (1724)
T 4f92_B 802 TITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQL 881 (1724)
T ss_dssp EEEECSCCCTTTTTTEEEEEEEEECTTSCBEEEEEEEEEEGGGTTSCEEEEEEEECCSSCCSEEEEEEEESSSTTCEEEE
T ss_pred EEeeccccchhhcCCceeEEEEEEecCCCeEEEEEEEEeeeeccCCceEEEEEEECCCCCCCeEEEEEEEccccCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCCCcCCCCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHH
Q 000114 1298 PVSFRHLILPEKYPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEF 1376 (2158)
Q Consensus 1298 ~i~~~~l~lp~~~~~~t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l 1376 (2158)
|++|+|+++|++++++|+++|++|+|+++|+++.++++|. +|++|||+|++||+.+|++++|++|+||||||||++|++
T Consensus 882 ~~~~~~~~~p~~~~~~t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliael 961 (1724)
T 4f92_B 882 PVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEF 961 (1724)
T ss_dssp EEECTTCCCCCCCCCCCCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHH
T ss_pred eeccccccCCCCCCCCCccccCCCCCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHH
Confidence 9999999999999999999999999999999999999998 699999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhh
Q 000114 1377 AILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRW 1456 (2158)
Q Consensus 1377 ~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~ 1456 (2158)
||++.+.+ .+++ ++|||+|+||||.|++++|+++|++..|++|+.++|+...+.+.+.+++|+|||||+|+.++|+|
T Consensus 962 ail~~l~~-~~~~--kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~ 1038 (1724)
T 4f92_B 962 AILRMLLQ-SSEG--RCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRW 1038 (1724)
T ss_dssp HHHHHHHH-CTTC--CEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTT
T ss_pred HHHHHHHh-CCCC--EEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCc
Confidence 99999987 3444 89999999999999999999999988899999999999988888888999999999999999999
Q ss_pred hccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCc
Q 000114 1457 KQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVR 1536 (2158)
Q Consensus 1457 ~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~r 1536 (2158)
..+..++++++||+||+|++++.+|+.+|.+++||+++..+.+.++|+|+||||++|++++++||++....+++|.+++|
T Consensus 1039 ~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~R 1118 (1724)
T 4f92_B 1039 KQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVR 1118 (1724)
T ss_dssp TTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGC
T ss_pred ccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCC
Confidence 98888999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccc
Q 000114 1537 PVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEV 1616 (2158)
Q Consensus 1537 pv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l 1616 (2158)
|+|++.++.+++..+...++..+.++.+..+..+ .+++|+||||+||++|+.+|..|...+.......+ ++....+++
T Consensus 1119 PvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~-~~~~~~~~l 1196 (1724)
T 4f92_B 1119 PVPLELHIQGFNISHTQTRLLSMAKPVYHAITKH-SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQR-FLHCTEKDL 1196 (1724)
T ss_dssp SSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHH-CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTT-TBCSCHHHH
T ss_pred CCCeEEEEEeccCCCchhhhhhhcchHHHHHHHh-cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhh-hhcccHHHH
Confidence 9999999999999999999999999999888877 88999999999999999999999998887776666 788888888
Q ss_pred hhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCc
Q 000114 1617 EPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHT 1696 (2158)
Q Consensus 1617 ~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~ 1696 (2158)
...++.+.+..|.+++..||++|||||++.+|..|+++|++|.++|||||++++||||+|++.|||+||++|+++.+++.
T Consensus 1197 ~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~ 1276 (1724)
T 4f92_B 1197 IPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYV 1276 (1724)
T ss_dssp HHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEE
T ss_pred HHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHHhhCCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHH
Q 000114 1697 DYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLYDAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTW 1776 (2158)
Q Consensus 1697 ~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~ 1776 (2158)
|+++.+|+||+|||||+|+|..|.|+++|++.++++|++++++++|+||+|+..+.+|+++||+.|++.+++|+++|++|
T Consensus 1277 ~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~ 1356 (1724)
T 4f92_B 1277 DYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTW 1356 (1724)
T ss_dssp ECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTT
T ss_pred CCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCCCCccCCCCCcccHHHHHHHHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcC
Q 000114 1777 TFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLT 1856 (2158)
Q Consensus 1777 t~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~ 1856 (2158)
||||+|+.+||+||++.+.++.+++++++++|++++..|+++|||++++++++.||++|++||+|||+|.|++.|..+++
T Consensus 1357 Tfl~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~ 1436 (1724)
T 4f92_B 1357 TFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLN 1436 (1724)
T ss_dssp SSHHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCC
T ss_pred hHHHHHHhcCcccccccccchhhHHHHHHHHHHHHHHHHHHCCCEEEcCCCCEeecHHHHHHHHHCCCHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhcCccccCCCCCcchHHHHHHHhhcCccccCCCCCCChHHHHHHHHHHHhcCCCCCCCchhhHHHHHH
Q 000114 1857 PKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLL 1936 (2158)
Q Consensus 1857 ~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~~~K~~lLLqAhlsR~~lp~~l~~D~~~Il~ 1936 (2158)
+.+++.++|++||.|+||.++|+|++|+..+++|++.+|++++...+.+|+.|+++||||||+|+++|.+|.+|++.|++
T Consensus 1437 ~~~~~~~~L~il~~a~ef~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~~lLlqa~~~r~~l~~~~~~D~~~i~~ 1516 (1724)
T 4f92_B 1437 AKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILS 1516 (1724)
T ss_dssp TTCCHHHHHHHHHTSGGGTTCCCCTTHHHHHHHHHHHSSSCCSSCCTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhcCCcccccccccccHHHHHHHHHhhCCCCCCccccCCHHHHHHHHHHHHHCCCcCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHH
Q 000114 1937 SASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERR 2016 (2158)
Q Consensus 1937 ~~~rLl~a~vdi~~~~g~l~~~l~~m~L~q~i~Q~~w~~~s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~ 2016 (2158)
++.||++||+|+|++.||+.+++++|+|+|||.||+|++++||+|||||+...+++|.++| |+|++||+++++++++
T Consensus 1517 ~~~rl~~a~~d~~~~~g~~~~~~~~~~l~q~l~~~~w~~~~~L~qip~i~~~~ar~l~~~g---i~t~~dl~~~~~~~~~ 1593 (1724)
T 4f92_B 1517 KAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKG---VESVFDIMEMEDEERN 1593 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHTTCCTTSCGGGGSTTCCHHHHHHHHHHT---CCSHHHHHSSCHHHHT
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhCCCcCCcCEecCCCCCHHHHHHHHHCC---CCCHHHHHhCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHhCCChHHHHHHHHHHccCCceEEEEEEeccccccCCCeEEEEEEEEEcCCCCcccCccccCCCCCCccccEEEEEEEC
Q 000114 2017 ELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDT 2096 (2158)
Q Consensus 2017 ~ll~~~~~~~~~v~~~~~~~P~i~v~~~v~~~~~v~~g~~~~l~v~l~r~~~~~~~~~~v~ap~fp~~k~e~Wwlvvgd~ 2096 (2158)
.+|+++++++++|+++|++||+|+|++++.+.+.+.+|++++++|+++|+.+. .++|+||+||+.|.|+||+||||.
T Consensus 1594 ~ll~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~p~~k~e~w~~vvg~~ 1670 (1724)
T 4f92_B 1594 ALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEV---TGPVIAPLFPQKREEGWWVVIGDA 1670 (1724)
T ss_dssp TSSCCCHHHHHHHHHHHHHSCCEEEEEEEETSSSCCTTSEEEEEEEEEESSCC---CSCCCCTTSCSCCCCCEEEEEEET
T ss_pred HHHCCChHHHHHHHHHHHhCCceEEEEEEecCccccCCCeEEEEEEEEecCCC---CCeeecCCCCCCCccCEEEEEEEC
Confidence 99999999999999999999999999999998899999999999999996532 247999999999999999999999
Q ss_pred CCCeEEEEEEeecccceEEEEEEEecCCCCceEEEEEEEeCCccccCcEEEEEEE
Q 000114 2097 KTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVD 2151 (2158)
Q Consensus 2097 ~~~~L~~~krv~~~~~~~~~l~f~~P~~~G~~~~~l~~~sDsY~G~D~~~~~~l~ 2151 (2158)
++|+|+++||+++.+...++++|.+| .+|.|+|++|+|||||+||||||+|+++
T Consensus 1671 ~~~~l~~~kr~~~~~~~~~~l~f~~p-~~g~~~~~~~~~~d~y~g~d~~~~~~~~ 1724 (1724)
T 4f92_B 1671 KSNSLISIKRLTLQQKAKVKLDFVAP-ATGAHNYTLYFMSDAYMGCDQEYKFSVD 1724 (1724)
T ss_dssp TTTEEEEEEEECCSSEEEEEEEEECC-SSSCEEEEEEEEESSCSSCCEEEEEEEC
T ss_pred CCCeEEEEEEEecCCCceEEEEEEeC-CCCceeEEEEEEecCccccceeEEEecC
Confidence 99999999999999988999999999 6899999999999999999999999874
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-111 Score=1208.88 Aligned_cols=802 Identities=29% Similarity=0.481 Sum_probs=733.3
Q ss_pred cccCCCC-hhhHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEE
Q 000114 477 IKISEMP-EWAQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIV 554 (2158)
Q Consensus 477 ~~i~~lp-~~~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil 554 (2158)
.+++.|+ +.++..| .+|++|||+|+++|+.++++++|++++||||||||++|.+||++.+.+.. +.++|
T Consensus 906 lp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~---------~~kav 976 (1724)
T 4f92_B 906 LPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS---------EGRCV 976 (1724)
T ss_dssp CBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT---------TCCEE
T ss_pred CCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC---------CCEEE
Confidence 4667774 4455566 57999999999999999999999999999999999999999999998642 34899
Q ss_pred EEcccHHHHHHHHHHHHhhccc-CCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccc
Q 000114 555 YVAPMKALVAEVVGNLSNRLQM-YDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIH 633 (2158)
Q Consensus 555 ~iaP~kaLa~q~~~~~~~~~~~-~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH 633 (2158)
||+|+||||.|+++.|.++++. +|++|+.++|+...+.+....++|+|||||+|+.++|++....++++|++||+||+|
T Consensus 977 yi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H 1056 (1724)
T 4f92_B 977 YITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVH 1056 (1724)
T ss_dssp EECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGG
T ss_pred EEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechh
Confidence 9999999999999999988764 799999999998877667788999999999999999999887889999999999999
Q ss_pred ccccCChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChh
Q 000114 634 LLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPL 713 (2158)
Q Consensus 634 ~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~ 713 (2158)
++++.||+.++.++.++.+.....+.++|+|+||||++|++++++||+.. ..+.+.|.+++||+|+..++.++......
T Consensus 1057 ~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~-~~~~~~~~~~~RPvpL~~~i~~~~~~~~~ 1135 (1724)
T 4f92_B 1057 LIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCS-ATSTFNFHPNVRPVPLELHIQGFNISHTQ 1135 (1724)
T ss_dssp GGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCC-STTEEECCGGGCSSCEEEEEEEECCCSHH
T ss_pred hcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCC-CCCeEEeCCCCCCCCeEEEEEeccCCCch
Confidence 99999999999999999888877888999999999999999999999987 46789999999999999999999888888
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhc
Q 000114 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2158)
Q Consensus 714 ~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (2158)
.++..++..++..+.....++++||||+||+.|+.+|..|............++.. ..+.+........+..|++++
T Consensus 1136 ~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~---~~~~l~~~l~~~~d~~L~~~l 1212 (1724)
T 4f92_B 1136 TRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHC---TEKDLIPYLEKLSDSTLKETL 1212 (1724)
T ss_dssp HHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCS---CHHHHHHHHTTCCCHHHHHHH
T ss_pred hhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcc---cHHHHHHHHhhcccHHHHHHH
Confidence 88888999889888888889999999999999999999998776554444444422 334455556677889999999
Q ss_pred cCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCC
Q 000114 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2158)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2158)
.+||++|||||++.+|..|++.|++|.++|||||+++|||||+|+++|||.+++.||+...++.++++.+|+||+|||||
T Consensus 1213 ~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR 1292 (1724)
T 4f92_B 1213 LNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANR 1292 (1724)
T ss_dssp HTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCC
T ss_pred hCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccC
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred CCCCCccEEEEEcCCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCC
Q 000114 874 PQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGL 953 (2158)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y~~ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~ 953 (2158)
+|+|..|.|+++|...+..+|.+++++++|+||+|...+.+++|+||+.|++.+.+++++|++|||+|+|+.+||.+|++
T Consensus 1293 ~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l 1372 (1724)
T 4f92_B 1293 PLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNL 1372 (1724)
T ss_dssp TTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTC
T ss_pred CCCCCceEEEEEecchHHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccchhHHHHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHh
Q 000114 954 APEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLF 1033 (2158)
Q Consensus 954 ~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~ 1033 (2158)
... ....+++++.++|++++..|+++|||..++ ++.+.+|++|++||+|||+|.|++.|...+++.++..++|+++
T Consensus 1373 ~~~---~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~-~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~L~il 1448 (1724)
T 4f92_B 1373 QGI---SHRHLSDHLSELVEQTLSDLEQSKCISIED-EMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEII 1448 (1724)
T ss_dssp SCC---SHHHHHHHHHHHHHHHHHHHHHTTSEEEET-TTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred ccc---chhhHHHHHHHHHHHHHHHHHHCCCEEEcC-CCCEeecHHHHHHHHHCCCHHHHHHHHHhccccCCHHHHHHHh
Confidence 763 456788999999999999999999999875 4679999999999999999999999999999999999999999
Q ss_pred hCCccCCCCcCChhHHHHHHHHhhcCCCCCCCC-CCChhHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHHHHHHH
Q 000114 1034 SLSEEFKYVTVRQDEKMELAKLLDRVPIPVKES-LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFE 1112 (2158)
Q Consensus 1034 s~~~ef~~i~~r~~e~~~l~~l~~~~~~~~~~~-~~~~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~ri~~a~~e 1112 (2158)
|.++||.++++|++|+..+.+|..++|+++.+. +++|+.|+++|||||+||++++ .++.+|+..|+++|.||++|++|
T Consensus 1449 ~~a~ef~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~~lLlqa~~~r~~l~-~~~~~D~~~i~~~~~rl~~a~~d 1527 (1724)
T 4f92_B 1449 SNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVD 1527 (1724)
T ss_dssp HTSGGGTTCCCCTTHHHHHHHHHHHSSSCCSSCCTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcccccccccccHHHHHHHHHhhCCCCCCccccCCHHHHHHHHHHHHHCCCcCC-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999987754 7899999999999999999997 68899999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHHHhCCC-CchhhccCChHHhhhhhcC-chhHHHHH
Q 000114 1113 IVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRF-PKMGRTLH 1190 (2158)
Q Consensus 1113 i~~~~~~~~~~~~~~~l~~~v~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~i~ 1190 (2158)
+|...||...+..+++|+|||.+++|++++||+|+|||+++++++|.++|+ ++.++.++++++++.+++. ++.+.+|+
T Consensus 1528 ~~~~~g~~~~~~~~~~l~q~l~~~~w~~~~~L~qip~i~~~~ar~l~~~gi~t~~dl~~~~~~~~~~ll~~~~~~~~~i~ 1607 (1724)
T 4f92_B 1528 VLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVA 1607 (1724)
T ss_dssp HHHHTTBHHHHHHHHHHHHHHHTTCCTTSCGGGGSTTCCHHHHHHHHHHTCCSHHHHHSSCHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHhCCCcCCcCEecCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHHCCChHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 7899999999999999974 78899999
Q ss_pred HHHhcCCcceEEEEEeecc----CceEEEEEEEecCCcccCCCCCCc------ccEEEEEEeCCCCeEeeeehhhhhccc
Q 000114 1191 KFVHQFPKLILAAHVQPIT----RTVLKVELTITPDFLWDDKVHGYV------EPFWVIVEDNDGEYILHHEYFMLKKQY 1260 (2158)
Q Consensus 1191 ~~~~~~P~~~~~~~~~p~~----~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~v~d~~~~~i~~~~~~~l~~~~ 1260 (2158)
++|++||++++++.+++.+ +..+.|.++++++...+..+|++. |.||++|+|.+++.|++++++.+++.
T Consensus 1608 ~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~p~~k~e~w~~vvg~~~~~~l~~~kr~~~~~~- 1686 (1724)
T 4f92_B 1608 RFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQK- 1686 (1724)
T ss_dssp HHHHHSCCEEEEEEEETSSSCCTTSEEEEEEEEEESSCCCSCCCCTTSCSCCCCCEEEEEEETTTTEEEEEEEECCSSE-
T ss_pred HHHHhCCceEEEEEEecCccccCCCeEEEEEEEEecCCCCCeeecCCCCCCCccCEEEEEEECCCCeEEEEEEEecCCC-
Confidence 9999999999999998654 567888888888877777787765 45999999999999999999998773
Q ss_pred cccccEEEEEEeccCCCCCeEEEEEecccccCCCccccccc
Q 000114 1261 IEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF 1301 (2158)
Q Consensus 1261 ~~~~~~~~f~vp~~~p~p~~y~v~~vSd~wlg~e~~~~i~~ 1301 (2158)
...+++|++| +|++++|.++++||+|+|++.+..+.+
T Consensus 1687 --~~~~l~f~~p--~~g~~~~~~~~~~d~y~g~d~~~~~~~ 1723 (1724)
T 4f92_B 1687 --AKVKLDFVAP--ATGAHNYTLYFMSDAYMGCDQEYKFSV 1723 (1724)
T ss_dssp --EEEEEEEECC--SSSCEEEEEEEEESSCSSCCEEEEEEE
T ss_pred --ceEEEEEEeC--CCCceeEEEEEEecCccccceeEEEec
Confidence 4577899888 689999999999999999998776653
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-80 Score=848.61 Aligned_cols=656 Identities=26% Similarity=0.380 Sum_probs=538.1
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
||+++++.| .||++|+++|.++++.++..++|++++||||||||++|.+++++.+... +.+++|++|+
T Consensus 15 l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----------~~~il~i~P~ 84 (715)
T 2va8_A 15 LPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN----------GGKAIYVTPL 84 (715)
T ss_dssp SCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS----------CSEEEEECSC
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC----------CCeEEEEeCc
Confidence 589999988 6899999999999998777788999999999999999999999987642 2489999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-C
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~ 638 (2158)
++||.|++++|+ .+..+|++|+.++|+..........++|+|+|||+|+.+.++.. .+++++++|||||+|.+.+ .
T Consensus 85 r~La~q~~~~~~-~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~--~~l~~~~~vIiDE~H~l~~~~ 161 (715)
T 2va8_A 85 RALTNEKYLTFK-DWELIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRP--EWLNEVNYFVLDELHYLNDPE 161 (715)
T ss_dssp HHHHHHHHHHHG-GGGGGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCC--GGGGGEEEEEECSGGGGGCTT
T ss_pred HHHHHHHHHHHH-HhhcCCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCCh--hHhhccCEEEEechhhcCCcc
Confidence 999999999994 56667999999999988776666789999999999988877743 5688999999999999988 7
Q ss_pred ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccC--------
Q 000114 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK-------- 710 (2158)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~-------- 710 (2158)
+|+.++.++.++. ++|+|+||||++|.++++.|++.. .+...+||+|+...+......
T Consensus 162 ~~~~l~~i~~~~~--------~~~ii~lSATl~n~~~~~~~l~~~------~~~~~~r~~~l~~~~~~~~~~~~~~~~~~ 227 (715)
T 2va8_A 162 RGPVVESVTIRAK--------RRNLLALSATISNYKQIAKWLGAE------PVATNWRPVPLIEGVIYPERKKKEYNVIF 227 (715)
T ss_dssp THHHHHHHHHHHH--------TSEEEEEESCCTTHHHHHHHHTCE------EEECCCCSSCEEEEEEEECSSTTEEEEEE
T ss_pred cchHHHHHHHhcc--------cCcEEEEcCCCCCHHHHHHHhCCC------ccCCCCCCCCceEEEEecCCcccceeeec
Confidence 9999999988773 789999999999999999999853 357788999988765422100
Q ss_pred -C-hhHHHHHhhHHHHHHHHHH-hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhh-----
Q 000114 711 -K-PLQRFQLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD----- 782 (2158)
Q Consensus 711 -~-~~~~~~~l~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 782 (2158)
. ....+. .....+..+.+. ..++++||||+++++++.++..|.+..... ++. ......+.....
T Consensus 228 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~-----~~~--~~~~~~~~~~~~~i~~~ 299 (715)
T 2va8_A 228 KDNTTKKVH-GDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFV-----SLD--ENALSEILKQLDDIEEG 299 (715)
T ss_dssp TTSCEEEEE-SSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSS-----CCC--HHHHHHHHHHHHTCCSS
T ss_pred Ccchhhhcc-cchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhc-----cCC--hHHHHHHHHHHHHhhhc
Confidence 0 000000 001122333332 247899999999999999999998753220 111 111111111111
Q ss_pred -ccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCC-ccccCC
Q 000114 783 -MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKG-AWTELS 860 (2158)
Q Consensus 783 -~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g-~~~~~s 860 (2158)
...+..|+++++.||++|||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+++..||+..+ .+.++|
T Consensus 300 ~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s 379 (715)
T 2va8_A 300 GSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIP 379 (715)
T ss_dssp CHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------C
T ss_pred cccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCC
Confidence 123456888899999999999999999999999999999999999999999999999999999999995432 257889
Q ss_pred HHHHHHhhcccCCCCCCCccEEEEEcCCCc-H-HHHHHhh-cCCCcccchhhH--hhHHHHHHHHHhccccChHHHHHHH
Q 000114 861 PLDIMQMLGRAGRPQYDSYGEGIIITGHSE-L-RYYLSLM-NQQLPIESQFVS--KLADQLNAEIVLGTVQNAKEACNWI 935 (2158)
Q Consensus 861 ~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~-~-~~y~~ll-~~~~pieS~l~~--~l~d~lnaeI~~~~i~~~~~~~~wl 935 (2158)
..+|+||+|||||+|+|..|.|++++++.+ . ..+.+++ ..+.|++|++.. .|.++++++++.|++.+.+++.+|+
T Consensus 380 ~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l 459 (715)
T 2va8_A 380 IMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFA 459 (715)
T ss_dssp HHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHH
T ss_pred HHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHH
Confidence 999999999999999999999999998876 3 3455554 578999999986 7999999999999999999999999
Q ss_pred HhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHH
Q 000114 936 GYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTIST 1015 (2158)
Q Consensus 936 ~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~ 1015 (2158)
++||+|+++.. .-+++|+..|.+.|+|..+ ++.+.+|++|++||+||++|.++++
T Consensus 460 ~~~~~~~~~~~-----------------------~~~~~al~~L~~~g~i~~~--~~~~~~t~lG~~~~~~~~~~~~~~~ 514 (715)
T 2va8_A 460 YESLLAKQLVD-----------------------VYFDRAIRWLLEHSFIKEE--GNTFALTNFGKRVADLYINPFTADI 514 (715)
T ss_dssp TTSSSCHHHHH-----------------------HHHHHHHHHHHHTTSEEEC--SSEEEECHHHHHHHHHTCCHHHHHH
T ss_pred HhhHHHhhcch-----------------------HHHHHHHHHHHHCcCEeec--CCeEeeChHHHHHHHHcCCHhHHHH
Confidence 99999876421 1278899999999999875 3668999999999999999999999
Q ss_pred HHhhcCC--CCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhhc------CCCCCCCC-CCC--hhHHHHHHHHHHHcC
Q 000114 1016 YNEHLKP--TMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDR------VPIPVKES-LEE--PSAKINVLLQAYISQ 1084 (2158)
Q Consensus 1016 ~~~~l~~--~~~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l~~~------~~~~~~~~-~~~--~~~K~~~llq~~i~~ 1084 (2158)
|+..++. ..+..++|.++|+++||+++++|++|+.+|.+++.+ .+.|++.. +++ ++.|+++|||+|||+
T Consensus 515 ~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~ 594 (715)
T 2va8_A 515 IRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDE 594 (715)
T ss_dssp HHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHHHHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhhccCCCHHHHHHHhhcCcccccCccChHHHHHHHHHHHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcC
Confidence 9998877 478899999999999999999999999999998753 22344321 222 789999999999999
Q ss_pred CCCCC----Ccc-cchHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHHH
Q 000114 1085 LKLEG----LSL-TSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLE 1159 (2158)
Q Consensus 1085 ~~~~~----~~l-~~d~~~i~~~a~ri~~a~~ei~~~~~~~~~~~~~~~l~~~v~~~~w~~~~~l~q~~~~~~~~~~~l~ 1159 (2158)
.+++. |++ .+|+.+++++|.|+++|+++||...||..++..++.|++||++|+|++.+||+||||||+.++|+|+
T Consensus 595 ~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~~i~~~~~~~~~~~~l~~l~~rl~~gv~~e~~~L~qlp~i~~~rar~L~ 674 (715)
T 2va8_A 595 VDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHLSRELKLNEHADKLRILNLRVRDGIKEELLELVQISGVGRKRARLLY 674 (715)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHH
T ss_pred CCHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCChhhcchhhCCCCCHHHHHHHH
Confidence 99865 888 6999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCC-CchhhccCChHHhhhhhcCchhHHHHHH-HHhcCCcc
Q 000114 1160 KKDF-AWERYYDLSPQELGELIRFPKMGRTLHK-FVHQFPKL 1199 (2158)
Q Consensus 1160 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~P~~ 1199 (2158)
++|+ ++.++. .+++++.++++ ++.|++|++ +..++|.+
T Consensus 675 ~~g~~s~~~l~-~~~~~l~~~l~-~~~~~~i~~~~~~~~~~~ 714 (715)
T 2va8_A 675 NNGIKELGDVV-MNPDKVKNLLG-QKLGEKVVQEAARLLNRF 714 (715)
T ss_dssp HTTCCSHHHHH-HCHHHHHHHHC-HHHHHHHHHHHHHHHC--
T ss_pred HcCCCCHHHHh-CCHHHHHHHhC-hhHHHHHHHHHHHhhccC
Confidence 9998 667777 79999999998 999999988 77778865
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-81 Score=851.14 Aligned_cols=653 Identities=25% Similarity=0.366 Sum_probs=538.4
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
||+++++.| .||++|+|+|+++++.++ .++|++++||||||||++|.+++++.+..+ .+++|++|+
T Consensus 10 l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~-~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----------~~~l~i~P~ 77 (702)
T 2p6r_A 10 ISSYAVGILKEEGIEELFPPQAEAVEKVF-SGKNLLLAMPTAAGKTLLAEMAMVREAIKG-----------GKSLYVVPL 77 (702)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHT-TCSCEEEECSSHHHHHHHHHHHHHHHHHTT-----------CCEEEEESS
T ss_pred cCHHHHHHHHhCCCCCCCHHHHHHHHHHh-CCCcEEEEcCCccHHHHHHHHHHHHHHHhC-----------CcEEEEeCc
Confidence 455667777 689999999999999955 567899999999999999999999987642 379999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-C
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~ 638 (2158)
++||.|++++|+ .+...|++|+.++|+..........++|+|+|||+|+.+.++.. .+++++++|||||+|++.+ .
T Consensus 78 r~La~q~~~~~~-~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~--~~l~~~~~vIiDE~H~l~~~~ 154 (702)
T 2p6r_A 78 RALAGEKYESFK-KWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRA--SWIKAVSCLVVDEIHLLDSEK 154 (702)
T ss_dssp HHHHHHHHHHHT-TTTTTTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTC--SGGGGCCEEEETTGGGGGCTT
T ss_pred HHHHHHHHHHHH-HHHhcCCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcCh--hHHhhcCEEEEeeeeecCCCC
Confidence 999999999994 56677999999999987776666789999999999988887743 5688999999999999988 7
Q ss_pred ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeec-----cCCh-
Q 000114 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQ-----VKKP- 712 (2158)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~-----~~~~- 712 (2158)
||+.++.++.++.+ ..+++|+|+||||++|.++++.|++.. .+...+||+|+...+.... ....
T Consensus 155 r~~~~~~ll~~l~~----~~~~~~ii~lSATl~n~~~~~~~l~~~------~~~~~~r~~~l~~~~~~~~~~~~~~~~~~ 224 (702)
T 2p6r_A 155 RGATLEILVTKMRR----MNKALRVIGLSATAPNVTEIAEWLDAD------YYVSDWRPVPLVEGVLCEGTLELFDGAFS 224 (702)
T ss_dssp THHHHHHHHHHHHH----HCTTCEEEEEECCCTTHHHHHHHTTCE------EEECCCCSSCEEEEEECSSEEEEEETTEE
T ss_pred cccHHHHHHHHHHh----cCcCceEEEECCCcCCHHHHHHHhCCC------cccCCCCCccceEEEeeCCeeeccCcchh
Confidence 99999999988754 356899999999999999999999853 3677889999877553211 1000
Q ss_pred -hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhh
Q 000114 713 -LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (2158)
Q Consensus 713 -~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 791 (2158)
..... +...+.+.+ ..++++||||+++++++.++..|.+.... ++..+.....++ .......+..+.+
T Consensus 225 ~~~~~~-~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~------~~~~~~~~~~i~-~~~~~~~~~~l~~ 293 (702)
T 2p6r_A 225 TSRRVK-FEELVEECV---AENGGVLVFESTRRGAEKTAVKLSAITAK------YVENEGLEKAIL-EENEGEMSRKLAE 293 (702)
T ss_dssp EEEECC-HHHHHHHHH---HTTCCEEEECSSHHHHHHHHHHHHHHHHT------TCCCSSHHHHHH-TTCCSHHHHHHHH
T ss_pred hhhhhh-HHHHHHHHH---hcCCCEEEEcCCHHHHHHHHHHHHHHHHh------hcChHHHHHHHH-hhccccccHHHHH
Confidence 00000 122222222 24789999999999999999999876422 222222122221 1223334567888
Q ss_pred hccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhccc
Q 000114 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (2158)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (2158)
+++.||++|||+|++++|..+++.|++|.++|||||+++++|||+|++++||+++..|| |.+.++|..+|+||+|||
T Consensus 294 ~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd---~~~~~~s~~~~~Qr~GRa 370 (702)
T 2p6r_A 294 CVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFD---GYSKRIKVSEYKQMAGRA 370 (702)
T ss_dssp HHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEES---SSEEECCHHHHHHHHTTB
T ss_pred HHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeC---CCCCcCCHHHHHHHhhhc
Confidence 89999999999999999999999999999999999999999999999999999999998 236788999999999999
Q ss_pred CCCCCCCccEEEEEcCCCcHHHHH-Hhh-cCCCcccchhhH--hhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcC
Q 000114 872 GRPQYDSYGEGIIITGHSELRYYL-SLM-NQQLPIESQFVS--KLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRN 947 (2158)
Q Consensus 872 GR~g~d~~G~~iil~~~~~~~~y~-~ll-~~~~pieS~l~~--~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~n 947 (2158)
||+|+|..|.|+++++..+...+. +++ ..+.|++|++.. .|.++++++++.|++.+.+++.+|+++||+|+++. .
T Consensus 371 GR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~-~ 449 (702)
T 2p6r_A 371 GRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNE-I 449 (702)
T ss_dssp SCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHC-C
T ss_pred CCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhh-H
Confidence 999999999999999998866543 454 678999999986 79999999999999999999999999999998754 1
Q ss_pred CcccCCCccccccchhHHHHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCC-CCH
Q 000114 948 PALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPT-MGD 1026 (2158)
Q Consensus 948 p~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~-~~~ 1026 (2158)
| ..+.+++|+..|.+.|+|..+ +.+.+|++|+++|+||++|.|+++|+..++.. .+.
T Consensus 450 ~-------------------~~~~~~~al~~L~~~g~i~~~---~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (702)
T 2p6r_A 450 S-------------------LSYELERVVRQLENWGMVVEA---AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSD 507 (702)
T ss_dssp C-------------------CHHHHHHHHHHHHHTTSEEES---SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCH
T ss_pred H-------------------HHHHHHHHHHHHHHCcCeeEC---CeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCH
Confidence 1 125789999999999999875 56899999999999999999999999999886 677
Q ss_pred HHHHHHhhCCccCCCCcCChhHHHHHHHHhhc-----CCCC-CCCC-CC--ChhHHHHHHHHHHHcCCCCCC----Ccc-
Q 000114 1027 IELCRLFSLSEEFKYVTVRQDEKMELAKLLDR-----VPIP-VKES-LE--EPSAKINVLLQAYISQLKLEG----LSL- 1092 (2158)
Q Consensus 1027 ~~~l~~~s~~~ef~~i~~r~~e~~~l~~l~~~-----~~~~-~~~~-~~--~~~~K~~~llq~~i~~~~~~~----~~l- 1092 (2158)
.++|.++|+++||.++++|++| .+|.+++.+ .++| +++. ++ .++.|+++|||+|||+.+++. |++
T Consensus 508 ~~~l~~i~~~~e~~~i~~r~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~ 586 (702)
T 2p6r_A 508 IGALHLICRTPDMERLTVRKTD-SWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIA 586 (702)
T ss_dssp HHHHHHHHHSTTSCCCCCCTTT-HHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCC
T ss_pred HHHHHHhhCCcccccCCCCCch-HHHHHHHHhccccccCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCc
Confidence 8999999999999999999999 778777654 2333 2211 11 188999999999999999753 776
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHHHhCCC-CchhhccC
Q 000114 1093 TSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDL 1171 (2158)
Q Consensus 1093 ~~d~~~i~~~a~ri~~a~~ei~~~~~~~~~~~~~~~l~~~v~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~-~~~~~~~~ 1171 (2158)
.+|+.+++++|.||++|+++||...||. .+++|++||.+|+|++.+||+|+|||+++++++|+++|+ ++.++.++
T Consensus 587 ~gdl~~i~~~a~~l~~a~~~i~~~~g~~----~l~~l~~ri~~gv~~~~~~L~qlp~v~~~~ar~l~~~g~~s~~~l~~~ 662 (702)
T 2p6r_A 587 PGDLRRIVETAEWLSNAMNRIAEEVGNT----SVSGLTERIKHGVKEELLELVRIRHIGRVRARKLYNAGIRNAEDIVRH 662 (702)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCC----SSTTHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHHTTTCCSHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHcCCCcchHhhhcCCCCCHHHHHHHHHcCCCCHHHHHhh
Confidence 6999999999999999999999999997 778899999999999999999999999999999999998 67778777
Q ss_pred ChHHhhhhhcCchhHHHHHHHHhcCCcceEEEE
Q 000114 1172 SPQELGELIRFPKMGRTLHKFVHQFPKLILAAH 1204 (2158)
Q Consensus 1172 ~~~~~~~~~~~~~~~~~i~~~~~~~P~~~~~~~ 1204 (2158)
+ +++.++++ ++.|+.|++.++ +|.+++++.
T Consensus 663 ~-~~l~~ll~-~~~~~~i~~~~~-~p~~~~~~~ 692 (702)
T 2p6r_A 663 R-EKVASLIG-RGIAERVVEGIS-VKSLNPESA 692 (702)
T ss_dssp H-HHHHHHHC-HHHHHHHHHHHH-HHC------
T ss_pred h-HHHHHHhC-hhHHHHHHHhcC-CCccCcchh
Confidence 8 99999999 999999999999 999998743
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-79 Score=842.00 Aligned_cols=656 Identities=25% Similarity=0.368 Sum_probs=538.7
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.||+++++.| .||.+|+++|.++++.++..++|++++||||||||++|.+++++.+... +.+++|++|
T Consensus 7 ~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----------~~~~l~i~P 76 (720)
T 2zj8_A 7 RVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ----------GGKAVYIVP 76 (720)
T ss_dssp CSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH----------CSEEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC----------CCEEEEEcC
Confidence 3688888888 6899999999999998666678999999999999999999999888642 248999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD- 637 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d- 637 (2158)
+++||.|++++|+ .+..+|++|+.++|+.....+....++|+|+|||+|+.+.++.. .+++++++|||||+|++++
T Consensus 77 ~raLa~q~~~~~~-~l~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~--~~l~~~~~vIiDE~H~l~~~ 153 (720)
T 2zj8_A 77 LKALAEEKFQEFQ-DWEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGS--SWIKDVKILVADEIHLIGSR 153 (720)
T ss_dssp SGGGHHHHHHHTG-GGGGGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTC--TTGGGEEEEEEETGGGGGCT
T ss_pred cHHHHHHHHHHHH-HHHhcCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcCh--hhhhcCCEEEEECCcccCCC
Confidence 9999999999995 45667999999999988877777789999999999988877743 5688999999999999998
Q ss_pred CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEe-----eccCCh
Q 000114 638 NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIG-----IQVKKP 712 (2158)
Q Consensus 638 ~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~-----~~~~~~ 712 (2158)
.||+.++.++.++. .++|+|+||||++|+++++.|++.. .+...+||+|+...+.. +.....
T Consensus 154 ~r~~~~~~ll~~l~-------~~~~ii~lSATl~n~~~~~~~l~~~------~~~~~~rp~~l~~~~~~~~~~~~~~~~~ 220 (720)
T 2zj8_A 154 DRGATLEVILAHML-------GKAQIIGLSATIGNPEELAEWLNAE------LIVSDWRPVKLRRGVFYQGFVTWEDGSI 220 (720)
T ss_dssp TTHHHHHHHHHHHB-------TTBEEEEEECCCSCHHHHHHHTTEE------EEECCCCSSEEEEEEEETTEEEETTSCE
T ss_pred cccHHHHHHHHHhh-------cCCeEEEEcCCcCCHHHHHHHhCCc------ccCCCCCCCcceEEEEeCCeeeccccch
Confidence 79999999988873 2799999999999999999999754 36778899998765432 111000
Q ss_pred hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhh----hccCcch
Q 000114 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHT----DMVKSND 788 (2158)
Q Consensus 713 ~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~ 788 (2158)
.........+.+.+ ..++++||||+|++.|+.++..|.+.... ++. ......+.... ....+..
T Consensus 221 -~~~~~~~~~~~~~~---~~~~~~LVF~~sr~~~~~~a~~L~~~~~~------~~~--~~~~~~~~~~~~~i~~~~~~~~ 288 (720)
T 2zj8_A 221 -DRFSSWEELVYDAI---RKKKGALIFVNMRRKAERVALELSKKVKS------LLT--KPEIRALNELADSLEENPTNEK 288 (720)
T ss_dssp -EECSSTTHHHHHHH---HTTCCEEEECSCHHHHHHHHHHHHHHHGG------GSC--HHHHHHHHHHHHTSCSCHHHHH
T ss_pred -hhhhHHHHHHHHHH---hCCCCEEEEecCHHHHHHHHHHHHHHHHH------hcC--hhhHHHHHHHHHHHhcccchHH
Confidence 00011112222211 24689999999999999999999876432 111 11111111111 1123445
Q ss_pred hhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhh
Q 000114 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQML 868 (2158)
Q Consensus 789 l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~ 868 (2158)
|.++++.||++|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+++..|| .. ++.++|..+|+||+
T Consensus 289 l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd-~~-g~~~~s~~~~~Qr~ 366 (720)
T 2zj8_A 289 LAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYS-DF-GMERIPIIEVHQML 366 (720)
T ss_dssp HHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECC-SS-SCEECCHHHHHHHH
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeec-CC-CCccCCHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999 22 36789999999999
Q ss_pred cccCCCCCCCccEEEEEcCCCcHHH-HHHhh-cCCCcccchhhH--hhHHHHHHHHHhccccChHHHHHHHHhhHHHHHh
Q 000114 869 GRAGRPQYDSYGEGIIITGHSELRY-YLSLM-NQQLPIESQFVS--KLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRM 944 (2158)
Q Consensus 869 GRAGR~g~d~~G~~iil~~~~~~~~-y~~ll-~~~~pieS~l~~--~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~ 944 (2158)
|||||+|+|..|.|++++++.+... +.+++ ..+.|++|++.. .+.++++++++.|++.+.+++.+|+++||+|+++
T Consensus 367 GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~ 446 (720)
T 2zj8_A 367 GRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQR 446 (720)
T ss_dssp TTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHC
T ss_pred hhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhc
Confidence 9999999999999999999887654 44555 578899999876 7999999999999999999999999999999885
Q ss_pred hcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCC-
Q 000114 945 LRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPT- 1023 (2158)
Q Consensus 945 ~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~- 1023 (2158)
.. + .++.+.+++|+..|.+.|+|..+. ++.+.+|++|++||+||++|.|+++|+..++..
T Consensus 447 ~~--------------~----~~~~~~~~~~l~~L~~~~~i~~~~-~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~ 507 (720)
T 2zj8_A 447 KD--------------T----YSLEEKIRNILYFLLENEFIEISL-EDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVV 507 (720)
T ss_dssp SC--------------C----HHHHHHHHHHHHHHHHTTSEEECT-TSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cc--------------h----HHHHHHHHHHHHHHHHCCCeeECC-CCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 31 1 133478899999999999998332 467899999999999999999999999988774
Q ss_pred --CCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhhc------CCCCCCCCCCC-------hhHHHHHHHHHHHcCCCCC
Q 000114 1024 --MGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDR------VPIPVKESLEE-------PSAKINVLLQAYISQLKLE 1088 (2158)
Q Consensus 1024 --~~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l~~~------~~~~~~~~~~~-------~~~K~~~llq~~i~~~~~~ 1088 (2158)
.+..++|.++|+++||+++++|++|+.+|.+++.+ .++|++.+.++ ++.|+++|||+||++.+++
T Consensus 508 ~~~~~~~~l~i~~~~~e~~~i~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~ 587 (720)
T 2zj8_A 508 KDPNPIGIFHLISLTPDITPFNYSKREFERLEEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEG 587 (720)
T ss_dssp HSCCHHHHHHHHHTSTTCCCCCCCHHHHHHHHHHHHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred cCCCHHHHHHHhccCccccccccCHHHHHHHHHHHHhccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHH
Confidence 67889999999999999999999999999988633 45666654233 7899999999999999974
Q ss_pred ----CCcc-cchHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHHHhCCC
Q 000114 1089 ----GLSL-TSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF 1163 (2158)
Q Consensus 1089 ----~~~l-~~d~~~i~~~a~ri~~a~~ei~~~~~~~~~~~~~~~l~~~v~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~ 1163 (2158)
+|++ .+|+.+++++|.||++|+++||...||...+..+..|++||.+|+|++.+||.|+|||++.++++|+++|+
T Consensus 588 ~i~~~~~~~~gdl~~~~~~a~~l~~a~~~i~~~~g~~~~~~~l~~l~~rl~~gv~~e~~~L~qlp~v~~~rar~L~~~G~ 667 (720)
T 2zj8_A 588 EIVEKYSVEPGDIYRIVETAEWLVYSLKEIAKVLGAYEIVDYLETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSGF 667 (720)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHTCCGGGGGGTTSTTCCHHHHHHHHTTTC
T ss_pred HHHHHhCCChHhHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHcCCCccchhhhhCCCCCHHHHHHHHHcCC
Confidence 4666 69999999999999999999999999976555555599999999999999999999999999999999998
Q ss_pred -CchhhccCChHHhhhhhcCchhHHHHH----HHHhcCCc
Q 000114 1164 -AWERYYDLSPQELGELIRFPKMGRTLH----KFVHQFPK 1198 (2158)
Q Consensus 1164 -~~~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~P~ 1198 (2158)
++.++.+++++++..+ +++|++++ ..+.++|.
T Consensus 668 ~s~~dl~~~~~~~l~~~---~~~~~~i~~~~~~~~~~~~~ 704 (720)
T 2zj8_A 668 RSIEDISQARPEELLKI---EGIGVKTVEAIFKFLGKNVK 704 (720)
T ss_dssp CSHHHHHTCCHHHHHTS---TTCCHHHHHHHHHHHC----
T ss_pred CCHHHHHhCCHHHHHHh---HhHHHHHHHHHHHhcccccc
Confidence 6888888899988877 55565444 44444554
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-78 Score=825.28 Aligned_cols=654 Identities=23% Similarity=0.331 Sum_probs=541.0
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
||..|+|+|.++++.++..++|++++||||||||++|++++++.+... ++ +++|++|+++|+.|++++|+ +|...
T Consensus 20 g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~--~~l~i~P~raLa~q~~~~~~-~l~~~ 94 (720)
T 2zj8_A 20 GIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GG--KAVYIVPLKALAEEKFQEFQ-DWEKI 94 (720)
T ss_dssp TCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CS--EEEEECSSGGGHHHHHHHTG-GGGGG
T ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CC--EEEEEcCcHHHHHHHHHHHH-HHHhc
Confidence 799999999999999555588899999999999999999999988752 34 99999999999999999996 66654
Q ss_pred CCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCCChHHHHHHHHHHHHh
Q 000114 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIAS 1496 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g~~~e~~isrl~~i~~ 1496 (2158)
|++++.++|+...+.+.+..++|+|+|||+|+.++++ ....++++++|||||+|++++ .+|+.++.++.+++
T Consensus 95 -g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~--~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~---- 167 (720)
T 2zj8_A 95 -GLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRH--GSSWIKDVKILVADEIHLIGSRDRGATLEVILAHML---- 167 (720)
T ss_dssp -TCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHH--TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB----
T ss_pred -CCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHc--ChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh----
Confidence 8899999999887776677889999999999998887 344589999999999999987 68999999888775
Q ss_pred hcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCC
Q 000114 1497 QVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKP 1576 (2158)
Q Consensus 1497 ~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~ 1576 (2158)
.+.|+|+||||++|++++++|++... +....||+|+...+.......+...........+..+...+.++++
T Consensus 168 ---~~~~ii~lSATl~n~~~~~~~l~~~~-----~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (720)
T 2zj8_A 168 ---GKAQIIGLSATIGNPEELAEWLNAEL-----IVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKG 239 (720)
T ss_dssp ---TTBEEEEEECCCSCHHHHHHHTTEEE-----EECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHHTTCC
T ss_pred ---cCCeEEEEcCCcCCHHHHHHHhCCcc-----cCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHhCCCC
Confidence 27999999999999999999998642 5667889988766532211111110001112233444444467899
Q ss_pred EEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHh----hhhHHHHHHHhcccEEEecCCCCHHHHHHHH
Q 000114 1577 ALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFID----NIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2158)
Q Consensus 1577 ~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~----~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~ 1652 (2158)
+||||+|++.|+.++..|........... ....+....+ ...+..|.+.+..||++|||+|+.++|..++
T Consensus 240 ~LVF~~sr~~~~~~a~~L~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 313 (720)
T 2zj8_A 240 ALIFVNMRRKAERVALELSKKVKSLLTKP------EIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVE 313 (720)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHGGGSCHH------HHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred EEEEecCHHHHHHHHHHHHHHHHHhcChh------hHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 99999999999999999976532200000 0001111111 1234558888899999999999999999999
Q ss_pred HHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH-
Q 000114 1653 ALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE- 1731 (2158)
Q Consensus 1653 ~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~- 1731 (2158)
+.|++|.++|||||+++++|||+|++.+||.++++||+. ++.|+|..+|+||+|||||+|+|..|.|++++...+.+
T Consensus 314 ~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~--g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 314 ENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDF--GMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp HHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSS--SCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHH
T ss_pred HHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCC--CCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHH
Confidence 999999999999999999999999999999999999943 35799999999999999999999999999999887644
Q ss_pred HHHHHhh-CCCccccchhh--HHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccHHHHHHHHH
Q 000114 1732 YYKKFLY-DAFPVESHLHH--FLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELV 1808 (2158)
Q Consensus 1732 ~~~k~l~-~~~piES~L~~--~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~lv 1808 (2158)
++++++. ++.|++|++.. .+.++++++++.+++.+.+|+.+|+++||+|+|+.. +.++++.+
T Consensus 392 ~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~---------------~~~~~~~~ 456 (720)
T 2zj8_A 392 VMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKD---------------TYSLEEKI 456 (720)
T ss_dssp HHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSC---------------CHHHHHHH
T ss_pred HHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccc---------------hHHHHHHH
Confidence 4667774 79999999965 799999999999999999999999999999987531 35678999
Q ss_pred HHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCC---CCHHHHHHHHhcCccccCCCCCcchHH
Q 000114 1809 ENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPK---TRMKGLLEVLASASEYAQLPIRPGEEE 1885 (2158)
Q Consensus 1809 e~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~---~~~~~lL~ils~a~Ef~~i~vR~~E~~ 1885 (2158)
++++..|.+.|||.+++++.+.+|++|+++|+||++|.|+++|..+++.. ....++|.++|.++||.++++|++|..
T Consensus 457 ~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~e~~ 536 (720)
T 2zj8_A 457 RNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFE 536 (720)
T ss_dssp HHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHHHHH
T ss_pred HHHHHHHHHCCCeeECCCCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCccccccccCHHHHH
Confidence 99999999999998666667999999999999999999999999988763 667899999999999999999999998
Q ss_pred HHHHHhhc------CccccCCC--C--CCC--hHHHHHHHHHHHhcCCCCCC------CchhhHHHHHHHHHHHHHHHHH
Q 000114 1886 VVRRLIHH------QRFSFENP--K--FTD--PHVKANALLQAHFSRQQVGG------NLKLDQEEVLLSASRLLQAMVD 1947 (2158)
Q Consensus 1886 ~l~~L~~~------~p~~~~~~--~--~~~--~~~K~~lLLqAhlsR~~lp~------~l~~D~~~Il~~~~rLl~a~vd 1947 (2158)
.+.++... .+.++... . +.. ++.|+++|||+|++|.+++. .+.+|+++++++|.||++||++
T Consensus 537 ~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl~~~~~~a~~l~~a~~~ 616 (720)
T 2zj8_A 537 RLEEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLKE 616 (720)
T ss_dssp HHHHHHHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHhHHHHHHHHHHHHHHHHH
Confidence 88887422 12222211 0 111 78999999999999998752 2689999999999999999999
Q ss_pred HHHhcCCHHHHHHHHH-HHHHHHhccCCCCCccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHH
Q 000114 1948 VISSNGWLSLALLAME-VSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQL 2026 (2158)
Q Consensus 1948 i~~~~g~l~~~l~~m~-L~q~i~Q~~w~~~s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~ 2026 (2158)
||...||.. +.++|. |+|||.||+|++++||+|||||+..++++|.++| ++|+.||++++++++..+-++.++++
T Consensus 617 i~~~~g~~~-~~~~l~~l~~rl~~gv~~e~~~L~qlp~v~~~rar~L~~~G---~~s~~dl~~~~~~~l~~~~~~~~~i~ 692 (720)
T 2zj8_A 617 IAKVLGAYE-IVDYLETLRVRVKYGIREELIPLMQLPLVGRRRARALYNSG---FRSIEDISQARPEELLKIEGIGVKTV 692 (720)
T ss_dssp HHHHHTCGG-GHHHHHHHHHHHHHTCCGGGGGGTTSTTCCHHHHHHHHTTT---CCSHHHHHTCCHHHHHTSTTCCHHHH
T ss_pred HHHHcCcHH-HHHHHHHHHHHHHcCCCccchhhhhCCCCCHHHHHHHHHcC---CCCHHHHHhCCHHHHHHhHhHHHHHH
Confidence 999999975 445565 9999999999999999999999999999999999 99999999999999998866999999
Q ss_pred HHHHHHHccCCc
Q 000114 2027 LDIARFCNRFPN 2038 (2158)
Q Consensus 2027 ~~v~~~~~~~P~ 2038 (2158)
+++..++.++|.
T Consensus 693 ~~~~~~~~~~~~ 704 (720)
T 2zj8_A 693 EAIFKFLGKNVK 704 (720)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHhcccccc
Confidence 999999999998
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-78 Score=824.28 Aligned_cols=645 Identities=23% Similarity=0.357 Sum_probs=533.2
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
||.+|+|+|+++++.++. ++|++++||||||||++|++++++.+.. ++ +++|++|+++|+.|++++|+ ++...
T Consensus 22 g~~~l~~~Q~~~i~~i~~-~~~~lv~apTGsGKT~~~~l~il~~~~~---~~--~~l~i~P~r~La~q~~~~~~-~~~~~ 94 (702)
T 2p6r_A 22 GIEELFPPQAEAVEKVFS-GKNLLLAMPTAAGKTLLAEMAMVREAIK---GG--KSLYVVPLRALAGEKYESFK-KWEKI 94 (702)
T ss_dssp ---CCCCCCHHHHHHHTT-CSCEEEECSSHHHHHHHHHHHHHHHHHT---TC--CEEEEESSHHHHHHHHHHHT-TTTTT
T ss_pred CCCCCCHHHHHHHHHHhC-CCcEEEEcCCccHHHHHHHHHHHHHHHh---CC--cEEEEeCcHHHHHHHHHHHH-HHHhc
Confidence 689999999999999765 7789999999999999999999998765 44 89999999999999999995 67654
Q ss_pred CCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCCChHHHHHHHHHHHHh
Q 000114 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLEVIVSRMRYIAS 1496 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g~~~e~~isrl~~i~~ 1496 (2158)
|++++.++|+.....+.+..++|+|+|||+|+.++++ ....++++++||+||+|++++ .+|+.++.++.+++..
T Consensus 95 -g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~--~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~-- 169 (702)
T 2p6r_A 95 -GLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRN--RASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM-- 169 (702)
T ss_dssp -TCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHT--TCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH--
T ss_pred -CCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHc--ChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhc--
Confidence 8999999999887766677889999999999998887 334588999999999999987 5799999999998864
Q ss_pred hcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHH----HhcChHHHHHHHHhHh
Q 000114 1497 QVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM----QAMTKPTFTAIVQHAK 1572 (2158)
Q Consensus 1497 ~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~----~~~~k~~~~~i~~~~~ 1572 (2158)
+++.|+|+||||++|.+++++|++... +....||+|+...+.......+.... ..+ .....+...+.
T Consensus 170 --~~~~~ii~lSATl~n~~~~~~~l~~~~-----~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 240 (702)
T 2p6r_A 170 --NKALRVIGLSATAPNVTEIAEWLDADY-----YVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRV--KFEELVEECVA 240 (702)
T ss_dssp --CTTCEEEEEECCCTTHHHHHHHTTCEE-----EECCCCSSCEEEEEECSSEEEEEETTEEEEEEC--CHHHHHHHHHH
T ss_pred --CcCceEEEECCCcCCHHHHHHHhCCCc-----ccCCCCCccceEEEeeCCeeeccCcchhhhhhh--hHHHHHHHHHh
Confidence 568999999999999999999998542 56678999988765432211111000 000 03334444456
Q ss_pred cCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCc--ccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHH
Q 000114 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPA--EEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEV 1650 (2158)
Q Consensus 1573 ~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~--~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~ 1650 (2158)
+++++||||++++.|+.++..|...+.. ++.... +.+........+..+.+++..||++|||+|+.++|..
T Consensus 241 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~-------~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 313 (702)
T 2p6r_A 241 ENGGVLVFESTRRGAEKTAVKLSAITAK-------YVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRV 313 (702)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHT-------TCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHH
T ss_pred cCCCEEEEcCCHHHHHHHHHHHHHHHHh-------hcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHH
Confidence 7899999999999999999999765321 111110 0000011123456788888899999999999999999
Q ss_pred HHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChH
Q 000114 1651 VSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK 1730 (2158)
Q Consensus 1651 v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~ 1730 (2158)
+++.|++|.++|||||+++++|||+|++.+||.+++.||+. ..|+|..+|+||+|||||+|+|..|.|++++...+.
T Consensus 314 v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 314 VEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGY---SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp HHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSS---EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGH
T ss_pred HHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCC---CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccH
Confidence 99999999999999999999999999999999999999933 689999999999999999999999999999998875
Q ss_pred H-HHHHHhh-CCCccccchhh--HHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccHHHHHHH
Q 000114 1731 E-YYKKFLY-DAFPVESHLHH--FLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSE 1806 (2158)
Q Consensus 1731 ~-~~~k~l~-~~~piES~L~~--~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~ 1806 (2158)
+ ++++++. .++|++|+|.. .|.++++++++.|++.+.+|+.+|+++||+|+++. . ++++
T Consensus 391 ~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~-~----------------~~~~ 453 (702)
T 2p6r_A 391 EIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNE-I----------------SLSY 453 (702)
T ss_dssp HHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHC-C----------------CCHH
T ss_pred HHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhh-H----------------HHHH
Confidence 4 3556764 89999999975 79999999999999999999999999999998754 1 2358
Q ss_pred HHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCC-CCHHHHHHHHhcCccccCCCCCcchHH
Q 000114 1807 LVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPK-TRMKGLLEVLASASEYAQLPIRPGEEE 1885 (2158)
Q Consensus 1807 lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~-~~~~~lL~ils~a~Ef~~i~vR~~E~~ 1885 (2158)
.+++++..|.+.|||..+ +.+.+|++|+++|+||++|.|+++|..++... .+..++|.++|.+.||.++++|++|+.
T Consensus 454 ~~~~al~~L~~~g~i~~~--~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e~~ 531 (702)
T 2p6r_A 454 ELERVVRQLENWGMVVEA--AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTDSW 531 (702)
T ss_dssp HHHHHHHHHHHTTSEEES--SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTTHH
T ss_pred HHHHHHHHHHHCcCeeEC--CeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCchHH
Confidence 999999999999999875 56899999999999999999999999998874 556799999999999999999999954
Q ss_pred HHHHHhh-cCccccCCCCCCC-------hHHHHHHHHHHHhcCCCCCC------CchhhHHHHHHHHHHHHHHHHHHHHh
Q 000114 1886 VVRRLIH-HQRFSFENPKFTD-------PHVKANALLQAHFSRQQVGG------NLKLDQEEVLLSASRLLQAMVDVISS 1951 (2158)
Q Consensus 1886 ~l~~L~~-~~p~~~~~~~~~~-------~~~K~~lLLqAhlsR~~lp~------~l~~D~~~Il~~~~rLl~a~vdi~~~ 1951 (2158)
+...+.+ ..++ .+.+.+.. ++.|+++|||||++|.+++. .+.+|+++++++|.||++||++||..
T Consensus 532 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~~~i~~~ 610 (702)
T 2p6r_A 532 VEEEAFRLRKEL-SYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEE 610 (702)
T ss_dssp HHHHHHHHGGGS-SCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccc-cCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433 1333 11112344 89999999999999998752 25899999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHH
Q 000114 1952 NGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIAR 2031 (2158)
Q Consensus 1952 ~g~l~~~l~~m~L~q~i~Q~~w~~~s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~ 2031 (2158)
.||. .+++|+|||.||+|++++||+|||||+..++++|.++| ++|++||++++ +++..+++ +.+.++|.+
T Consensus 611 ~g~~----~l~~l~~ri~~gv~~~~~~L~qlp~v~~~~ar~l~~~g---~~s~~~l~~~~-~~l~~ll~--~~~~~~i~~ 680 (702)
T 2p6r_A 611 VGNT----SVSGLTERIKHGVKEELLELVRIRHIGRVRARKLYNAG---IRNAEDIVRHR-EKVASLIG--RGIAERVVE 680 (702)
T ss_dssp TTCC----SSTTHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHHTTT---CCSHHHHHHTH-HHHHHHHC--HHHHHHHHH
T ss_pred cCHH----HHHHHHHHHHcCCCcchHhhhcCCCCCHHHHHHHHHcC---CCCHHHHHhhh-HHHHHHhC--hhHHHHHHH
Confidence 9997 77899999999999999999999999999999999999 99999999999 88888887 889999999
Q ss_pred HHccCCceEEEEE
Q 000114 2032 FCNRFPNIDMSFE 2044 (2158)
Q Consensus 2032 ~~~~~P~i~v~~~ 2044 (2158)
.+. +|.++|++.
T Consensus 681 ~~~-~p~~~~~~~ 692 (702)
T 2p6r_A 681 GIS-VKSLNPESA 692 (702)
T ss_dssp HHH-HHC------
T ss_pred hcC-CCccCcchh
Confidence 999 999998654
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-75 Score=799.32 Aligned_cols=658 Identities=23% Similarity=0.333 Sum_probs=533.9
Q ss_pred ChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHH
Q 000114 1328 RNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKER 1406 (2158)
Q Consensus 1328 ~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~ 1406 (2158)
+....+.+.. ||.+|+|+|+++++.++..++|++++||||||||++|.+++++.+.. .++ +++|++|+++|+.|+
T Consensus 16 ~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~--~~~--~il~i~P~r~La~q~ 91 (715)
T 2va8_A 16 PSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK--NGG--KAIYVTPLRALTNEK 91 (715)
T ss_dssp CHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH--SCS--EEEEECSCHHHHHHH
T ss_pred CHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH--CCC--eEEEEeCcHHHHHHH
Confidence 3333333333 69999999999999966668899999999999999999999998875 244 999999999999999
Q ss_pred HHHHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC-CCCChHH
Q 000114 1407 YRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG-QGGPVLE 1485 (2158)
Q Consensus 1407 ~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~-~~g~~~e 1485 (2158)
+++|+ ++... |++++.++|+.....+.+..++|+|+|||+|+.++++ ....++++++|||||+|.+++ .+|+.++
T Consensus 92 ~~~~~-~~~~~-g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~--~~~~l~~~~~vIiDE~H~l~~~~~~~~l~ 167 (715)
T 2va8_A 92 YLTFK-DWELI-GFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRH--RPEWLNEVNYFVLDELHYLNDPERGPVVE 167 (715)
T ss_dssp HHHHG-GGGGG-TCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHH--CCGGGGGEEEEEECSGGGGGCTTTHHHHH
T ss_pred HHHHH-HhhcC-CCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhC--ChhHhhccCEEEEechhhcCCcccchHHH
Confidence 99995 67654 8899999999887766667889999999999998887 344589999999999999987 5788888
Q ss_pred HHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccc------cchHH---HH
Q 000114 1486 VIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDI------TNFEA---RM 1556 (2158)
Q Consensus 1486 ~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~------~~~~~---~~ 1556 (2158)
.++.+++ +.|+|+||||++|.+++++|++... +....||+|+..++..... ..+.. ..
T Consensus 168 ~i~~~~~--------~~~ii~lSATl~n~~~~~~~l~~~~-----~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (715)
T 2va8_A 168 SVTIRAK--------RRNLLALSATISNYKQIAKWLGAEP-----VATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKK 234 (715)
T ss_dssp HHHHHHH--------TSEEEEEESCCTTHHHHHHHHTCEE-----EECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEE
T ss_pred HHHHhcc--------cCcEEEEcCCCCCHHHHHHHhCCCc-----cCCCCCCCCceEEEEecCCcccceeeecCcchhhh
Confidence 8888776 6899999999999999999998542 5567789988766532110 00000 00
Q ss_pred HhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCC-CcccchhhHhh------hhHHHHH
Q 000114 1557 QAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLW-PAEEVEPFIDN------IQEEMLK 1629 (2158)
Q Consensus 1557 ~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~-~~~~l~~~~~~------i~d~~L~ 1629 (2158)
.......+..+...+.+++++||||++++.|+.++..|....... ++.. ....+....+. ..+..+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~l~ 308 (715)
T 2va8_A 235 VHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFV------SLDENALSEILKQLDDIEEGGSDEKELLK 308 (715)
T ss_dssp EESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSS------CCCHHHHHHHHHHHHTCCSSCHHHHHHHH
T ss_pred cccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhc------cCChHHHHHHHHHHHHhhhccccccHHHH
Confidence 011234455555555778999999999999999999997654320 0000 00111112221 2346788
Q ss_pred HHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCC-cCcCCCHHHHHHhhc
Q 000114 1630 ATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQEN-AHTDYPVTDLLQMMG 1708 (2158)
Q Consensus 1630 ~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~-~~~~~s~~~~lQr~G 1708 (2158)
+.+..||++|||+|+.++|..+++.|++|.++|||||+++++|||+|++.+||.+++.|+++.. ...|+|..+|+||+|
T Consensus 309 ~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~G 388 (715)
T 2va8_A 309 SLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSG 388 (715)
T ss_dssp HHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHT
T ss_pred HHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhh
Confidence 8889999999999999999999999999999999999999999999999999999999994321 257899999999999
Q ss_pred cCCCCCCCCceEEEEEecCChH--HHHHHHhh-CCCccccchhh--HHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhh
Q 000114 1709 HASRPLLDNSGKCVILCHAPRK--EYYKKFLY-DAFPVESHLHH--FLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRL 1783 (2158)
Q Consensus 1709 RaGR~g~d~~G~~iil~~~~~~--~~~~k~l~-~~~piES~L~~--~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl 1783 (2158)
||||+|+|..|.|++++.+.++ .++++++. +++|++|+|.. .|.++++++++.|++.+.+|+.+|+++||+|++.
T Consensus 389 RaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~ 468 (715)
T 2va8_A 389 RAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQL 468 (715)
T ss_dssp TBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHH
T ss_pred hcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhc
Confidence 9999999999999999988763 56777874 89999999965 7999999999999999999999999999999864
Q ss_pred ccCCCCccCCCCCcccHHHHHHHHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCC--CCCH
Q 000114 1784 TQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTP--KTRM 1861 (2158)
Q Consensus 1784 ~~nP~~Y~~~~~~~~~~~~~l~~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~--~~~~ 1861 (2158)
.. .-+++++..|.+.|||..+ ++.+.+|++|+++|+||++|.|+++|..++.. ....
T Consensus 469 ~~--------------------~~~~~al~~L~~~g~i~~~-~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (715)
T 2va8_A 469 VD--------------------VYFDRAIRWLLEHSFIKEE-GNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCE 527 (715)
T ss_dssp HH--------------------HHHHHHHHHHHHTTSEEEC-SSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCH
T ss_pred ch--------------------HHHHHHHHHHHHCcCEeec-CCeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCH
Confidence 32 2389999999999999865 34689999999999999999999999988876 4778
Q ss_pred HHHHHHHhcCccccCCCCCcchHHHHHHHhh-cCccccCCCCCCC-------hHHHHHHHHHHHhcCCCCCC-----Cc-
Q 000114 1862 KGLLEVLASASEYAQLPIRPGEEEVVRRLIH-HQRFSFENPKFTD-------PHVKANALLQAHFSRQQVGG-----NL- 1927 (2158)
Q Consensus 1862 ~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~-~~p~~~~~~~~~~-------~~~K~~lLLqAhlsR~~lp~-----~l- 1927 (2158)
.++|.++|.+.||.++++|++|+..+.++.. ..+..+....+.. ++.|+++|||||++|.++.. .+
T Consensus 528 ~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~ 607 (715)
T 2va8_A 528 LAYLHLLAFTPDGPLVSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIG 607 (715)
T ss_dssp HHHHHHHHHSTTSCCCCCCHHHHHHHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCC
T ss_pred HHHHHHhhcCcccccCccChHHHHHHHHHHHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCC
Confidence 9999999999999999999999999988843 3333222112222 78999999999999998752 22
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHhCCCCCccCHHHH
Q 000114 1928 KLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDL 2007 (2158)
Q Consensus 1928 ~~D~~~Il~~~~rLl~a~vdi~~~~g~l~~~l~~m~L~q~i~Q~~w~~~s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl 2007 (2158)
.+|+.+++++|.||++|+.+||...||...+..+++|++||.+|+|++.+||+|||||+..++++|.++| ++|+.||
T Consensus 608 ~gdl~~l~~~a~~l~~a~~~i~~~~~~~~~~~~l~~l~~rl~~gv~~e~~~L~qlp~i~~~rar~L~~~g---~~s~~~l 684 (715)
T 2va8_A 608 SGDLRNMVETMDWLTYSAYHLSRELKLNEHADKLRILNLRVRDGIKEELLELVQISGVGRKRARLLYNNG---IKELGDV 684 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCGGGHHHHTSTTCCHHHHHHHHHTT---CCSHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCChhhcchhhCCCCCHHHHHHHHHcC---CCCHHHH
Confidence 7899999999999999999999999999988899999999999999999999999999999999999999 9999999
Q ss_pred hcCCHHHHHHHhCCChHHHHHHHH-HHccCCce
Q 000114 2008 VEMEDDERRELLQMSDVQLLDIAR-FCNRFPNI 2039 (2158)
Q Consensus 2008 ~~~~~~~r~~ll~~~~~~~~~v~~-~~~~~P~i 2039 (2158)
+ ++++++..+++ +.+.++|++ +...+|.+
T Consensus 685 ~-~~~~~l~~~l~--~~~~~~i~~~~~~~~~~~ 714 (715)
T 2va8_A 685 V-MNPDKVKNLLG--QKLGEKVVQEAARLLNRF 714 (715)
T ss_dssp H-HCHHHHHHHHC--HHHHHHHHHHHHHHHC--
T ss_pred h-CCHHHHHHHhC--hhHHHHHHHHHHHhhccC
Confidence 9 99999999987 788888888 55556754
|
| >3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-62 Score=604.94 Aligned_cols=324 Identities=35% Similarity=0.678 Sum_probs=308.4
Q ss_pred EcCCCcccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHhcCccccCCCCCcchHHHHHHHhhcCccccC-CC
Q 000114 1823 IEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFE-NP 1901 (2158)
Q Consensus 1823 ~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~-~~ 1901 (2158)
+++++.+.||++|+|||+|||+|.||+.|..+++++++..++|++||.|.||+++|+|++|+..|.+|++.+|+++. +.
T Consensus 3 ~~~~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~~~~~~~~~ 82 (328)
T 3im1_A 3 MEATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPEHT 82 (328)
T ss_dssp -CCCCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGGSCCCTTHHHHHHHHHTTSSSCCCTTS
T ss_pred ccCCCCccCCchhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhccHHHHHhcccCcchHHHHHHHHHhCCCcccccC
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999998853 45
Q ss_pred CCCChHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCcccc
Q 000114 1902 KFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQ 1981 (2158)
Q Consensus 1902 ~~~~~~~K~~lLLqAhlsR~~lp~~l~~D~~~Il~~~~rLl~a~vdi~~~~g~l~~~l~~m~L~q~i~Q~~w~~~s~L~Q 1981 (2158)
.+++|+.|+++||||||+|+++|.+|.+|+.+|+++|.||++||+||++.+||+. ++++|+|+|||+||+|++++||+|
T Consensus 83 ~~~~~~~K~~lLLqa~isr~~l~~~l~~D~~~V~~~a~rLl~al~di~~~~g~~~-~~~~l~L~q~i~q~~w~~~~pL~Q 161 (328)
T 3im1_A 83 SSGSVSFKVFLLLQAYFSRLELPVDFQNDLKDILEKVVPLINVVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQ 161 (328)
T ss_dssp CSSSHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBTT-HHHHHHHHHHHHHTSCTTSCGGGG
T ss_pred CCCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHhhcCCCCCceeC
Confidence 6888999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHccCCceEEEEEEeccccccCCCeEEEEE
Q 000114 1982 LPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQV 2061 (2158)
Q Consensus 1982 LP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~~P~i~v~~~v~~~~~v~~g~~~~l~v 2061 (2158)
||||+++.+++|.++| ++|++||++++++++..++++++.++++|+++|++||+|+|+++|.+++.|++|+.++|+|
T Consensus 162 lp~i~~~~~~~l~~~~---i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v 238 (328)
T 3im1_A 162 IPHFNNKILEKCKEIN---VETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITI 238 (328)
T ss_dssp STTCCHHHHHHHHHTT---CCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEETTGGGCCTTSEEEEEE
T ss_pred CCCCCHHHHHHHHhCC---CCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHhCCCEEEEEEecCCCcccCCCeEEEEE
Confidence 9999999999999999 9999999999999999999999999999999999999999999999988999999999999
Q ss_pred EEEEcCCCCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeeccc-ceEEEEEEEecCCCCceEEEEEEEeCCcc
Q 000114 2062 VLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQR-KSRVKLDFAAPAEAGKKTYTLYFMCDSYM 2140 (2158)
Q Consensus 2062 ~l~r~~~~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~~~-~~~~~l~f~~P~~~G~~~~~l~~~sDsY~ 2140 (2158)
+++|++++ ..+.||||+||+.|.|+||++|||.++|+|+++||+++.+ .++++++|++|+ +|.|+|++|+|||||+
T Consensus 239 ~l~~~~~~--~~~~~~ap~fp~~k~e~ww~~v~d~~~~~l~~~kr~~~~~~~~~~~~~f~~p~-~g~~~~~v~~vsD~yl 315 (328)
T 3im1_A 239 QLTRDVEP--ENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKETQQYELEFDTPT-SGKHNLTIWCVCDSYL 315 (328)
T ss_dssp EEEESSCC--SCCBCCCSSCCBCCBCCEEEEEEEGGGTEEEEEEEECCCSSEEEEEEEEECCC-SEEEEEEEEEEESSCS
T ss_pred EEEECCCC--CCCcEECCCCCCCccCCEEEEEEECCCCeEEEEeeecccccceEEEEEEEcCC-CCcEEEEEEEEecCCc
Confidence 99997643 3468999999999999999999999999999999999975 789999999995 6999999999999999
Q ss_pred ccCcEEEEEEEee
Q 000114 2141 GCDQEYAFTVDVK 2153 (2158)
Q Consensus 2141 G~D~~~~~~l~V~ 2153 (2158)
|||++++|+++|.
T Consensus 316 G~d~~~~~~l~V~ 328 (328)
T 3im1_A 316 DADKELSFEINVK 328 (328)
T ss_dssp SCCEEEEEEEEEC
T ss_pred ceeEEEEEEEEeC
Confidence 9999999999984
|
| >2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-62 Score=603.26 Aligned_cols=323 Identities=57% Similarity=0.998 Sum_probs=279.7
Q ss_pred CcccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHHhcCccccCCCCCcchHHHHHHHhhcCccccCCCCCCCh
Q 000114 1827 MDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDP 1906 (2158)
Q Consensus 1827 ~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~ 1906 (2158)
+.+.||++|+|||+|||+|.||+.|+..++++++..++|++||.|.||+++|+|++|+..|.+|++++|++++.+.+++|
T Consensus 11 g~l~~t~lGriaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~EF~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~~~ 90 (339)
T 2q0z_X 11 MDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDP 90 (339)
T ss_dssp --------------------------------CCHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHHSSSCCSSCCTTCH
T ss_pred ceeccCcHHHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHHhchHHHhcCCCCcchHHHHHHHHHhCCCccccCCCCCH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999998876678999
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCC
Q 000114 1907 HVKANALLQAHFSRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFM 1986 (2158)
Q Consensus 1907 ~~K~~lLLqAhlsR~~lp~~l~~D~~~Il~~~~rLl~a~vdi~~~~g~l~~~l~~m~L~q~i~Q~~w~~~s~L~QLP~~~ 1986 (2158)
+.|+++||||||+|+++|.+|.+|+.+|+++|.||++||+||++.+||+.+++++|+|+|||+||+|++++||+|||||+
T Consensus 91 ~~K~~lLLqa~isr~~l~~~l~~D~~~V~~~a~RLl~al~di~~~~g~~~~~~~~l~L~q~i~q~~w~~~~pL~Qlp~i~ 170 (339)
T 2q0z_X 91 HVKTNLLLQAHLSRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFT 170 (339)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTTSCGGGGSTTCC
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCceecCCCCC
Confidence 99999999999999999989999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHccCCceEEEEEEeccccccCCCeEEEEEEEEEc
Q 000114 1987 KDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFPNIDMSFEVQDSENVRAGEDITLQVVLERD 2066 (2158)
Q Consensus 1987 ~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~~P~i~v~~~v~~~~~v~~g~~~~l~v~l~r~ 2066 (2158)
++.+++|.++| +.|+++|++++++++..+|++++.++++|+++|++||+|+|+++|.+++.+++|+.++|+|+++|+
T Consensus 171 ~~~~~~l~~~~---i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~l~~~ 247 (339)
T 2q0z_X 171 SEHIKRCTDKG---VESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLERE 247 (339)
T ss_dssp HHHHHHHHHTT---CCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTTSCCEEEEEEETTGGGCBTTSEEEEEEEEEEC
T ss_pred HHHHHHHHhcC---CCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHHhCCcEEEEEEEccCccccCCCcEEEEEEEEEC
Confidence 99999999999 999999999999999999999999999999999999999999999998889999999999999996
Q ss_pred CCCCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeecccceEEEEEEEecCCCCceEEEEEEEeCCccccCcEE
Q 000114 2067 LEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEY 2146 (2158)
Q Consensus 2067 ~~~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~~~~~~~~l~f~~P~~~G~~~~~l~~~sDsY~G~D~~~ 2146 (2158)
++. .+.||||+||+.|.|+||++|||.++|+|++++|+++.+..+++++|++| .+|.++|++++|||+|+|||+++
T Consensus 248 ~~~---~~~v~aP~fp~~k~e~wwi~v~d~~~~~ll~~~r~~l~~~~~~~l~f~~P-~~g~~~~~v~~vSD~ylG~D~~~ 323 (339)
T 2q0z_X 248 EEV---TGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAP-ATGAHNYTLYFMSDAYMGCDQEY 323 (339)
T ss_dssp SSC---CSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEEEECCSSEEEEEEEEECC-SSEEEEEEEEEEESSCSSCCEEE
T ss_pred CCC---CCceeCCCCCCCCCCcEEEEEEECCCCEEEEEEEEecccceEEEEEEECC-CCCCeeEEEEEEcccccCcceEE
Confidence 432 25799999999999999999999999999999999999888899999999 89999999999999999999999
Q ss_pred EEEEEeecCC
Q 000114 2147 AFTVDVKEAG 2156 (2158)
Q Consensus 2147 ~~~l~V~~~~ 2156 (2158)
+|+++|.+++
T Consensus 324 ~i~~~v~~~~ 333 (339)
T 2q0z_X 324 KFSVDVKEAE 333 (339)
T ss_dssp EEEEEEBCC-
T ss_pred EEEEEEecCc
Confidence 9999998875
|
| >2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-53 Score=523.78 Aligned_cols=306 Identities=24% Similarity=0.401 Sum_probs=257.8
Q ss_pred CCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhhcCCCCCCC-CCCC
Q 000114 991 SGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE-SLEE 1069 (2158)
Q Consensus 991 ~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l~~~~~~~~~~-~~~~ 1069 (2158)
.|.+.||++|||||+|||+|.||+.|+..+++.++..++|++||.|.||.++++|++|+.+|.+|.+++|+|+++ .+++
T Consensus 10 ~g~l~~t~lGriaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~EF~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~~ 89 (339)
T 2q0z_X 10 HMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFND 89 (339)
T ss_dssp ---------------------------------CCHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHHSSSCCSSCCTTC
T ss_pred CceeccCcHHHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHHhchHHHhcCCCCcchHHHHHHHHHhCCCccccCCCCC
Confidence 477999999999999999999999999999999999999999999999999999999999999999999999964 6889
Q ss_pred hhHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCCccccCC
Q 000114 1070 PSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNG 1149 (2158)
Q Consensus 1070 ~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~ri~~a~~ei~~~~~~~~~~~~~~~l~~~v~~~~w~~~~~l~q~~~ 1149 (2158)
|+.|+++||||||||++++ .+|.+|+.+|+++|.||++||+||+..+||+..+..+++|||||+||+|++++||+||||
T Consensus 90 ~~~K~~lLLqa~isr~~l~-~~l~~D~~~V~~~a~RLl~al~di~~~~g~~~~~~~~l~L~q~i~q~~w~~~~pL~Qlp~ 168 (339)
T 2q0z_X 90 PHVKTNLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPH 168 (339)
T ss_dssp HHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTTSCGGGGSTT
T ss_pred HHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCceecCCC
Confidence 9999999999999999998 699999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhCCC-CchhhccCChHHhhhhhcCch-hHHHHHHHHhcCCcceEEEEEee---c-cCceEEEEEEEecCC
Q 000114 1150 IPNEILMKLEKKDF-AWERYYDLSPQELGELIRFPK-MGRTLHKFVHQFPKLILAAHVQP---I-TRTVLKVELTITPDF 1223 (2158)
Q Consensus 1150 ~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~P~~~~~~~~~p---~-~~~~~~~~l~~~~~~ 1223 (2158)
||++++++|+++|+ +++++.++++++++.++++++ .++.+++++++||+++|++.++| | +++.++|+|++++++
T Consensus 169 i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~l~~~~ 248 (339)
T 2q0z_X 169 FTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREE 248 (339)
T ss_dssp CCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTTSCCEEEEEEETTGGGCBTTSEEEEEEEEEECS
T ss_pred CCHHHHHHHHhcCCCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHHhCCcEEEEEEEccCccccCCCcEEEEEEEEECC
Confidence 99999999999998 899999999999999999764 66999999999999999999996 6 478999999999999
Q ss_pred cccCCCCCCc------ccEEEEEEeCCCCeEeeeehhhhhccccccccEEEEEEeccCCCCCeEEEEEecccccCCCccc
Q 000114 1224 LWDDKVHGYV------EPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQTVL 1297 (2158)
Q Consensus 1224 ~~~~~~~~~~------~~~~~~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSd~wlg~e~~~ 1297 (2158)
+|+..+|++. |.|||||+|++++.|++++++.+++ ..++.++|++| .|++++|+++++||+|+|++.+.
T Consensus 249 ~~~~~v~aP~fp~~k~e~wwi~v~d~~~~~ll~~~r~~l~~---~~~~~l~f~~P--~~g~~~~~v~~vSD~ylG~D~~~ 323 (339)
T 2q0z_X 249 EVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQ---KAKVKLDFVAP--ATGAHNYTLYFMSDAYMGCDQEY 323 (339)
T ss_dssp SCCSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEEEECCSS---EEEEEEEEECC--SSEEEEEEEEEEESSCSSCCEEE
T ss_pred CCCCceeCCCCCCCCCCcEEEEEEECCCCEEEEEEEEeccc---ceEEEEEEECC--CCCCeeEEEEEEcccccCcceEE
Confidence 9999998754 5699999999999999999999877 34678999999 78999999999999999999999
Q ss_pred ccccc
Q 000114 1298 PVSFR 1302 (2158)
Q Consensus 1298 ~i~~~ 1302 (2158)
+++|.
T Consensus 324 ~i~~~ 328 (339)
T 2q0z_X 324 KFSVD 328 (339)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99875
|
| >3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-52 Score=514.26 Aligned_cols=305 Identities=24% Similarity=0.375 Sum_probs=281.2
Q ss_pred CCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhhcCCCCC--CCCCC
Q 000114 991 SGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPV--KESLE 1068 (2158)
Q Consensus 991 ~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l~~~~~~~~--~~~~~ 1068 (2158)
++.+.||++|+|||+|||+|.||+.|++.+++.++..++|+++|.|+||.++++|++|+.+|.+|..++|+|+ ++.++
T Consensus 6 ~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~~ 85 (328)
T 3im1_A 6 TEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPEHTSSG 85 (328)
T ss_dssp CCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGGSCCCTTHHHHHHHHHTTSSSCCCTTSCSS
T ss_pred CCCccCCchhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhccHHHHHhcccCcchHHHHHHHHHhCCCcccccCCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999997 56788
Q ss_pred ChhHHHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCCccccC
Q 000114 1069 EPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFN 1148 (2158)
Q Consensus 1069 ~~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a~ri~~a~~ei~~~~~~~~~~~~~~~l~~~v~~~~w~~~~~l~q~~ 1148 (2158)
+|+.|+++||||||||++++. +|.+|+.+|+++|.||++||+||+..+||+. +.++++|||||+||+|++++||+|||
T Consensus 86 ~~~~K~~lLLqa~isr~~l~~-~l~~D~~~V~~~a~rLl~al~di~~~~g~~~-~~~~l~L~q~i~q~~w~~~~pL~Qlp 163 (328)
T 3im1_A 86 SVSFKVFLLLQAYFSRLELPV-DFQNDLKDILEKVVPLINVVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQIP 163 (328)
T ss_dssp SHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTBTT-HHHHHHHHHHHHHTSCTTSCGGGGST
T ss_pred CHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHhhcCCCCCceeCCC
Confidence 999999999999999999987 9999999999999999999999999999999 99999999999999999999999999
Q ss_pred CCCHHHHHHHHhCCC-CchhhccCChHHhhhhhcCc-hhHHHHHHHHhcCCcceEEEEEee---c-cCceEEEEEEEecC
Q 000114 1149 GIPNEILMKLEKKDF-AWERYYDLSPQELGELIRFP-KMGRTLHKFVHQFPKLILAAHVQP---I-TRTVLKVELTITPD 1222 (2158)
Q Consensus 1149 ~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~P~~~~~~~~~p---~-~~~~~~~~l~~~~~ 1222 (2158)
|||++++++|+++|+ +++++.++++++++++++++ +.++.+++++++||+++|+++++| | +++.++|.|+++++
T Consensus 164 ~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~l~~~ 243 (328)
T 3im1_A 164 HFNNKILEKCKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQLTRD 243 (328)
T ss_dssp TCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEETTGGGCCTTSEEEEEEEEEES
T ss_pred CCCHHHHHHHHhCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHhCCCEEEEEEecCCCcccCCCeEEEEEEEEEC
Confidence 999999999999998 89999999999999999865 588999999999999999999986 7 57999999999999
Q ss_pred CcccC-CC------CCCcccEEEEEEeCCCCeEeeeehhhhhccccccccEEEEEEeccCCCCCeEEEEEecccccCCCc
Q 000114 1223 FLWDD-KV------HGYVEPFWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLNFTVPIYEPLPPQYFIRVVSDKWLGSQT 1295 (2158)
Q Consensus 1223 ~~~~~-~~------~~~~~~~~~~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~f~vp~~~p~p~~y~v~~vSd~wlg~e~ 1295 (2158)
|.|++ .+ |+..|+||+||+|++++.|++.+++.+.+. ..++.++|.+| +|++++|+++++||+|+|+++
T Consensus 244 ~~~~~~~~~ap~fp~~k~e~ww~~v~d~~~~~l~~~kr~~~~~~--~~~~~~~f~~p--~~g~~~~~v~~vsD~ylG~d~ 319 (328)
T 3im1_A 244 VEPENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKE--TQQYELEFDTP--TSGKHNLTIWCVCDSYLDADK 319 (328)
T ss_dssp SCCSCCBCCCSSCCBCCBCCEEEEEEEGGGTEEEEEEEECCCSS--EEEEEEEEECC--CSEEEEEEEEEEESSCSSCCE
T ss_pred CCCCCCcEECCCCCCCccCCEEEEEEECCCCeEEEEeeeccccc--ceEEEEEEEcC--CCCcEEEEEEEEecCCcceeE
Confidence 99965 34 455677999999999999999999998652 23444555555 679999999999999999999
Q ss_pred cccccc
Q 000114 1296 VLPVSF 1301 (2158)
Q Consensus 1296 ~~~i~~ 1301 (2158)
+.++.+
T Consensus 320 ~~~~~l 325 (328)
T 3im1_A 320 ELSFEI 325 (328)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 988865
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-42 Score=478.26 Aligned_cols=396 Identities=25% Similarity=0.358 Sum_probs=295.9
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
++..|+++|.++++.++.+ .++|++||||||||++|++|++..+..+ .+++|++|+++|+.|+++.|.
T Consensus 181 ~~f~ltp~Q~~AI~~i~~g-~dvLV~ApTGSGKTlva~l~i~~~l~~g-----------~rvlvl~PtraLa~Q~~~~l~ 248 (1108)
T 3l9o_A 181 YPFTLDPFQDTAISCIDRG-ESVLVSAHTSAGKTVVAEYAIAQSLKNK-----------QRVIYTSPIKALSNQKYRELL 248 (1108)
T ss_dssp CSSCCCHHHHHHHHHHTTT-CCEEEECCSSSHHHHHHHHHHHHHHHTT-----------CEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcC-CCEEEECCCCCChHHHHHHHHHHHHhcC-----------CeEEEEcCcHHHHHHHHHHHH
Confidence 3457999999999997655 5699999999999999999999988542 489999999999999999999
Q ss_pred hhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CChhhHHHHHHHH
Q 000114 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVART 650 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~iv~r~ 650 (2158)
+.++ .|+.++|+.+... +++|+|+||+++..+..... ..+.++++|||||||++.+ +||..++.++..+
T Consensus 249 ~~~~----~VglltGd~~~~~----~~~IlV~Tpe~L~~~L~~~~--~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l 318 (1108)
T 3l9o_A 249 AEFG----DVGLMTGDITINP----DAGCLVMTTEILRSMLYRGS--EVMREVAWVIFDEVHYMRDKERGVVWEETIILL 318 (1108)
T ss_dssp HHTS----SEEEECSSCBCCC----SCSEEEEEHHHHHHHHHHCS--SHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHS
T ss_pred HHhC----CccEEeCccccCC----CCCEEEeChHHHHHHHHcCc--cccccCCEEEEhhhhhccccchHHHHHHHHHhc
Confidence 9876 5788999987653 58999999999844443332 4578899999999999988 7899888876543
Q ss_pred HHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccC---------Chh--HHHH-H
Q 000114 651 VRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVK---------KPL--QRFQ-L 718 (2158)
Q Consensus 651 ~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~---------~~~--~~~~-~ 718 (2158)
+..+|+|+||||+||..+++.|++.....+...+...++|+|+...++..... ... ..+. .
T Consensus 319 -------~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~ 391 (1108)
T 3l9o_A 319 -------PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKA 391 (1108)
T ss_dssp -------CTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHH
T ss_pred -------CCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHH
Confidence 67899999999999999999999877666778888899999987655421110 000 0000 0
Q ss_pred ---h------------------------------hHHHHHHHH--HHhCCCeEEEEecChHHHHHHHHHHHHHhhccccc
Q 000114 719 ---M------------------------------NDLCYEKVV--AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTL 763 (2158)
Q Consensus 719 ---l------------------------------~~~~~~~i~--~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~ 763 (2158)
+ ...++..+. ...+.+++||||++++.|..++..|...+......
T Consensus 392 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e 471 (1108)
T 3l9o_A 392 MASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDE 471 (1108)
T ss_dssp HTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC--
T ss_pred HHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHH
Confidence 0 111111111 12235699999999999999999987665443211
Q ss_pred ccccccC-chhHHHHHhh-hhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEE
Q 000114 764 GRFLKED-SVSREILQSH-TDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTV 841 (2158)
Q Consensus 764 ~~~~~~~-~~~~~~l~~~-~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~v 841 (2158)
...+..- ......+... ........+..++..||++|||+|++.+|..+++.|++|.++|||||+++++|||+|++++
T Consensus 472 ~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~ 551 (1108)
T 3l9o_A 472 KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTV 551 (1108)
T ss_dssp --CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEE
T ss_pred HHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceE
Confidence 0000000 0000000000 0011223466778899999999999999999999999999999999999999999999999
Q ss_pred EEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCC-cHHHHHHhh-cCCCcccchhhHhhHHHHHH
Q 000114 842 IIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS-ELRYYLSLM-NQQLPIESQFVSKLADQLNA 918 (2158)
Q Consensus 842 VI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~-~~~~y~~ll-~~~~pieS~l~~~l~d~lna 918 (2158)
||+++.+|++.. ..++|+.+|+||+|||||.|.|..|.||++++.. +...+..++ ..+.|++|+|.......+|.
T Consensus 552 VI~~~~~~d~~~--~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~y~~ilnl 628 (1108)
T 3l9o_A 552 VFTSVRKWDGQQ--FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNL 628 (1108)
T ss_dssp EESCSEEESSSC--EEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_pred EEecCcccCccc--cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCCcccccccCCcHHHHHHH
Confidence 999999999875 4578999999999999999999999999999876 455566664 45689999987655444443
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-41 Score=447.09 Aligned_cols=368 Identities=19% Similarity=0.253 Sum_probs=273.6
Q ss_pred ccccCCCChhhHhhc--CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcE
Q 000114 476 LIKISEMPEWAQPAF--KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYK 552 (2158)
Q Consensus 476 l~~i~~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~k 552 (2158)
+.....|++++...+ .||.+|+|+|.++++.++.+ +.++|++||||||||++|++|+++.+...... ...+++
T Consensus 73 l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~----~~~~~~ 148 (563)
T 3i5x_A 73 LLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD----SQYMVK 148 (563)
T ss_dssp HHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS----STTSCC
T ss_pred HhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc----ccCCee
Confidence 334455888888887 68999999999999999964 56799999999999999999999998875422 123568
Q ss_pred EEEEcccHHHHHHHHHHHHhhccc----CCcEEEEEeCCCccCHhh----hccccEEEcchhHHHHHHhccCCCcccccc
Q 000114 553 IVYVAPMKALVAEVVGNLSNRLQM----YDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQLV 624 (2158)
Q Consensus 553 il~iaP~kaLa~q~~~~~~~~~~~----~gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPekld~l~r~~~~~~~l~~v 624 (2158)
+|||+||++||.|+++.+.+++.. .++.+..++|+....... ...++|+|+||++|..+.++.. ...++.+
T Consensus 149 ~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-~~~~~~~ 227 (563)
T 3i5x_A 149 AVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS-NKFFRFV 227 (563)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH-HHHCTTC
T ss_pred EEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcc-ccccccc
Confidence 999999999999999999986542 245688888887654432 3478999999999844333321 1357789
Q ss_pred ceEEeeccccccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCc-eEEec--CCcccc--
Q 000114 625 KLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG-LFYFD--NSYRPV-- 698 (2158)
Q Consensus 625 ~lIIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~-~~~f~--~~~rpv-- 698 (2158)
++|||||||++.+ .+++.++.++..+..........+|++++|||+++. +..+.......+ ...+. ....+.
T Consensus 228 ~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (563)
T 3i5x_A 228 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDK--VQKLANNIMNKKECLFLDTVDKNEPEAH 305 (563)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTH--HHHHTTTTCCSSEEEEEESSCSSSCSSC
T ss_pred eEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHH--HHHHHHHhcCCCceEEEeccCCCCcccc
Confidence 9999999999987 689999999888766555555688999999999863 333333222221 11111 111121
Q ss_pred -cceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHH
Q 000114 699 -PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREIL 777 (2158)
Q Consensus 699 -~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l 777 (2158)
.+.+.+... .........+...+...+.....++++||||+|++.|..++..|......
T Consensus 306 ~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~------------------ 365 (563)
T 3i5x_A 306 ERIDQSVVIS--EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK------------------ 365 (563)
T ss_dssp TTEEEEEEEE--SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTT------------------
T ss_pred ccCceEEEEC--chhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccC------------------
Confidence 122222222 11222222233333444444455789999999999999999999875311
Q ss_pred HhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccc
Q 000114 778 QSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWT 857 (2158)
Q Consensus 778 ~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~ 857 (2158)
...+..|||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+ |+++.
T Consensus 366 ----------------~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~~~p~---- 421 (563)
T 3i5x_A 366 ----------------DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ----IGVPS---- 421 (563)
T ss_dssp ----------------TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE----ESCCS----
T ss_pred ----------------CceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE----ECCCC----
Confidence 245788999999999999999999999999999999999999999999999 55554
Q ss_pred cCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHhh
Q 000114 858 ELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLM 898 (2158)
Q Consensus 858 ~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll 898 (2158)
++.+|+||+|||||.| ..|.|++++...+..++..+.
T Consensus 422 --s~~~y~Qr~GRagR~g--~~g~~i~~~~~~e~~~~~~l~ 458 (563)
T 3i5x_A 422 --ELANYIHRIGRTARSG--KEGSSVLFICKDELPFVRELE 458 (563)
T ss_dssp --STTHHHHHHTTSSCTT--CCEEEEEEEEGGGHHHHHHHH
T ss_pred --chhhhhhhcCccccCC--CCceEEEEEchhHHHHHHHHH
Confidence 5668999999999987 679999999999888777664
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-41 Score=467.26 Aligned_cols=388 Identities=25% Similarity=0.375 Sum_probs=292.7
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
+|. |+++|.++++.+..+ ++++++||||||||++|+++++..+.. +.++||++|+++|+.|+++.|.
T Consensus 84 ~f~-L~~~Q~eai~~l~~g-~~vLV~apTGSGKTlva~lai~~~l~~-----------g~rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 84 PFT-LDPFQDTAISCIDRG-ESVLVSAHTSAGKTVVAEYAIAQSLKN-----------KQRVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp SSC-CCHHHHHHHHHHHHT-CEEEEECCTTSCHHHHHHHHHHHHHHT-----------TCEEEEEESSHHHHHHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHHcC-CCEEEECCCCCChHHHHHHHHHHHhcc-----------CCeEEEECChHHHHHHHHHHHH
Confidence 464 999999999997765 569999999999999999999988753 2489999999999999999999
Q ss_pred hhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CChhhHHHHHHHH
Q 000114 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVART 650 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~iv~r~ 650 (2158)
+.++ .|+.++|+..... +++|+|+|||++..+..+.. ..+.++++|||||||++.+ .||..++.++..+
T Consensus 151 ~~~~----~vglltGd~~~~~----~~~IvV~Tpe~L~~~L~~~~--~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l 220 (1010)
T 2xgj_A 151 AEFG----DVGLMTGDITINP----DAGCLVMTTEILRSMLYRGS--EVMREVAWVIFDEVHYMRDKERGVVWEETIILL 220 (1010)
T ss_dssp HHHS----CEEEECSSCEECT----TCSEEEEEHHHHHHHHHHTC--TTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHS
T ss_pred HHhC----CEEEEeCCCccCC----CCCEEEEcHHHHHHHHHcCc--chhhcCCEEEEechhhhcccchhHHHHHHHHhc
Confidence 9875 6888999987653 58999999999855444432 4678999999999999988 6999998876543
Q ss_pred HHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeec---------cCCh------hHH
Q 000114 651 VRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQ---------VKKP------LQR 715 (2158)
Q Consensus 651 ~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~---------~~~~------~~~ 715 (2158)
+..+++|+||||+||..+++.|+......+...+...+||+|+...++... .... ...
T Consensus 221 -------~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1010)
T 2xgj_A 221 -------PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKA 293 (1010)
T ss_dssp -------CTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHH
T ss_pred -------CCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHH
Confidence 568999999999999999999998654556777778889999877655311 0000 000
Q ss_pred HHHh------------------------------hHHHHHHH--HHHhCCCeEEEEecChHHHHHHHHHHHHHhhccccc
Q 000114 716 FQLM------------------------------NDLCYEKV--VAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTL 763 (2158)
Q Consensus 716 ~~~l------------------------------~~~~~~~i--~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~ 763 (2158)
...+ ...+...+ ....+..++||||+|++.|+.++..|...+.....-
T Consensus 294 ~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e 373 (1010)
T 2xgj_A 294 MASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDE 373 (1010)
T ss_dssp HHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHH
T ss_pred HHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHH
Confidence 0000 00011111 112235699999999999999999886543221100
Q ss_pred ccccccCchhHHHHHhhhhcc--------CcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccC
Q 000114 764 GRFLKEDSVSREILQSHTDMV--------KSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVN 835 (2158)
Q Consensus 764 ~~~~~~~~~~~~~l~~~~~~~--------~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVd 835 (2158)
............... ....+..++..||++|||||++.+|..+++.|++|.++|||||+++++|||
T Consensus 374 ------~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GID 447 (1010)
T 2xgj_A 374 ------KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLN 447 (1010)
T ss_dssp ------HHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTT
T ss_pred ------HHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCC
Confidence 000000111111111 123456678899999999999999999999999999999999999999999
Q ss_pred CCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCC-cHHHHHHhh-cCCCcccchhhHhhH
Q 000114 836 LPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS-ELRYYLSLM-NQQLPIESQFVSKLA 913 (2158)
Q Consensus 836 lP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~-~~~~y~~ll-~~~~pieS~l~~~l~ 913 (2158)
+|++++||++...||... ..++|+.+|+||+|||||.|.|..|.|++++++. +...+.+++ ....|++|+|.....
T Consensus 448 iP~~~vVI~~~~kfd~~~--~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~l~s~f~~~~~ 525 (1010)
T 2xgj_A 448 MPAKTVVFTSVRKWDGQQ--FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYN 525 (1010)
T ss_dssp CCBSEEEESCSEEECSSC--EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCCCCCCCCCCHH
T ss_pred CCCceEEEeCCcccCCcC--CccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCCCcccccccCCcHH
Confidence 999999999888888753 4567999999999999999999899999999875 666666664 556789999875544
Q ss_pred HHHH
Q 000114 914 DQLN 917 (2158)
Q Consensus 914 d~ln 917 (2158)
..+|
T Consensus 526 ~iln 529 (1010)
T 2xgj_A 526 MILN 529 (1010)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=418.41 Aligned_cols=337 Identities=17% Similarity=0.273 Sum_probs=259.5
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.|++++...+ .||.+|+|+|.++++.++.++ +++++||||||||++|++|+++.+...... ....++++||++|
T Consensus 62 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~-d~i~~a~TGsGKT~a~~lpil~~l~~~~~~---~~~~~~~~lil~P 137 (434)
T 2db3_A 62 DLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGR-DLMACAQTGSGKTAAFLLPILSKLLEDPHE---LELGRPQVVIVSP 137 (434)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTC-CEEEECCTTSSHHHHHHHHHHHHHHHSCCC---CCTTCCSEEEECS
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCC-CEEEECCCCCCchHHHHHHHHHHHHhcccc---cccCCccEEEEec
Confidence 4788888877 799999999999999988764 599999999999999999999998765321 1224578999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHH-HHHHhccCCCccccccceEEeecccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
|++||.|+++.+.++....++++..++|+.....+. ..+++|+|+||+++ +.+.+.. ..+.++++||+||||+
T Consensus 138 treLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~---~~l~~~~~lVlDEah~ 214 (434)
T 2db3_A 138 TRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTF---ITFEDTRFVVLDEADR 214 (434)
T ss_dssp SHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS---CCCTTCCEEEEETHHH
T ss_pred CHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCC---cccccCCeEEEccHhh
Confidence 999999999999998888889999999998765432 35789999999998 5444432 4578899999999999
Q ss_pred ccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcc--cccceeEEEeeccCC
Q 000114 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR--PVPLSQQYIGIQVKK 711 (2158)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~r--pv~l~~~~~~~~~~~ 711 (2158)
+.+ ++++.+..++..+ ......|++++|||+| .++..+.........+....... ...+.+.+..+...
T Consensus 215 ~~~~gf~~~~~~i~~~~-----~~~~~~q~l~~SAT~~--~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~- 286 (434)
T 2db3_A 215 MLDMGFSEDMRRIMTHV-----TMRPEHQTLMFSATFP--EEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKY- 286 (434)
T ss_dssp HTSTTTHHHHHHHHHCT-----TSCSSCEEEEEESCCC--HHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGG-
T ss_pred hhccCcHHHHHHHHHhc-----CCCCCceEEEEeccCC--HHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcH-
Confidence 987 5777776665532 1256789999999998 45666655444343333222211 12333344333222
Q ss_pred hhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhh
Q 000114 712 PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD 791 (2158)
Q Consensus 712 ~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 791 (2158)
.+...+ .+.+.. . ..++||||++++.|..++..|...+
T Consensus 287 --~k~~~l----~~~l~~-~-~~~~lVF~~t~~~a~~l~~~L~~~~---------------------------------- 324 (434)
T 2db3_A 287 --AKRSKL----IEILSE-Q-ADGTIVFVETKRGADFLASFLSEKE---------------------------------- 324 (434)
T ss_dssp --GHHHHH----HHHHHH-C-CTTEEEECSSHHHHHHHHHHHHHTT----------------------------------
T ss_pred --HHHHHH----HHHHHh-C-CCCEEEEEeCcHHHHHHHHHHHhCC----------------------------------
Confidence 122222 222222 2 3459999999999999999987643
Q ss_pred hccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhccc
Q 000114 792 LLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRA 871 (2158)
Q Consensus 792 ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRA 871 (2158)
..+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+ ||++. +..+|+||+|||
T Consensus 325 ---~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~----~d~p~------~~~~y~qriGR~ 391 (434)
T 2db3_A 325 ---FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN----YDMPS------KIDDYVHRIGRT 391 (434)
T ss_dssp ---CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEE----SSCCS------SHHHHHHHHTTS
T ss_pred ---CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEE----ECCCC------CHHHHHHHhccc
Confidence 34677899999999999999999999999999999999999999999999 77665 788999999999
Q ss_pred CCCCCCCccEEEEEcCCC
Q 000114 872 GRPQYDSYGEGIIITGHS 889 (2158)
Q Consensus 872 GR~g~d~~G~~iil~~~~ 889 (2158)
||.| ..|.++++++..
T Consensus 392 gR~g--~~G~a~~~~~~~ 407 (434)
T 2db3_A 392 GRVG--NNGRATSFFDPE 407 (434)
T ss_dssp SCTT--CCEEEEEEECTT
T ss_pred ccCC--CCCEEEEEEecc
Confidence 9988 679999998853
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=432.76 Aligned_cols=382 Identities=20% Similarity=0.272 Sum_probs=275.5
Q ss_pred EecCCCCCCCCCCCCcccccCCCChhhHhhc--CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHH
Q 000114 460 IHVPAMKHKPLDPNEKLIKISEMPEWAQPAF--KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQL 536 (2158)
Q Consensus 460 i~vp~~~~~~~~~~~~l~~i~~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l 536 (2158)
+++|.....+...-..+.....|++++..++ .||.+|+|+|.++++.++.+ +.+++++||||+|||++|++|+++.+
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l 85 (579)
T 3sqw_A 6 IHVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHL 85 (579)
T ss_dssp EEECCCSSCCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EecCccCCCCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHH
Confidence 3445433332222233333445888888887 78999999999999999954 45799999999999999999999998
Q ss_pred HhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcc----cCCcEEEEEeCCCccCHhh----hccccEEEcchhHH
Q 000114 537 ALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQ----MYDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKW 608 (2158)
Q Consensus 537 ~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~----~~gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPekl 608 (2158)
...... ...++++|||+||++|+.|+++.+.+++. ...+.+..+.|+....... ...++|+|+||+++
T Consensus 86 ~~~~~~----~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l 161 (579)
T 3sqw_A 86 INTKFD----SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRL 161 (579)
T ss_dssp HHTTTS----STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHH
T ss_pred Hhcccc----ccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHH
Confidence 775321 12356899999999999999999998753 2346678888887654432 23689999999998
Q ss_pred -HHHHhccCCCccccccceEEeeccccccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccC
Q 000114 609 -DIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEK 686 (2158)
Q Consensus 609 -d~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~ 686 (2158)
+.+.+.. ...+..+++|||||||++.+ .+++.++.++..+..........+|++++|||+++ .+..+.......
T Consensus 162 ~~~l~~~~--~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~--~v~~~~~~~l~~ 237 (579)
T 3sqw_A 162 IDVLEKYS--NKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD--KVQKLANNIMNK 237 (579)
T ss_dssp HHHHHHHH--HHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT--HHHHHTTTTCCS
T ss_pred HHHHHhcc--ccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCCh--HHHHHHHHHcCC
Confidence 4444321 14567899999999999987 58889998888775544444558899999999986 333333322222
Q ss_pred ce-EEec--CCcccc---cceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcc
Q 000114 687 GL-FYFD--NSYRPV---PLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALEN 760 (2158)
Q Consensus 687 ~~-~~f~--~~~rpv---~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~ 760 (2158)
+. .... ....+. .+.+.+.... . .......+...+...+.....+.++||||+|++.|..++..|......
T Consensus 238 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~- 314 (579)
T 3sqw_A 238 KECLFLDTVDKNEPEAHERIDQSVVISE-K-FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK- 314 (579)
T ss_dssp SEEEEEESSCSSSCSSCTTEEEEEEEES-S-TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTT-
T ss_pred CceEEEeecCccccccccccceEEEEec-c-hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcC-
Confidence 21 1111 111111 1222222221 1 122222222333333444345789999999999999999998865211
Q ss_pred cccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceE
Q 000114 761 DTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHT 840 (2158)
Q Consensus 761 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~ 840 (2158)
...+..+||+|++.+|..+++.|++|.++|||||+++++|||+|+++
T Consensus 315 ---------------------------------~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~ 361 (579)
T 3sqw_A 315 ---------------------------------DLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVH 361 (579)
T ss_dssp ---------------------------------TSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCC
T ss_pred ---------------------------------CCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCC
Confidence 24578899999999999999999999999999999999999999999
Q ss_pred EEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHh
Q 000114 841 VIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSL 897 (2158)
Q Consensus 841 vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~l 897 (2158)
+||+ |+++. ++.+|+||+|||||.| ..|.|++++...+..++..+
T Consensus 362 ~VI~----~~~p~------s~~~y~Qr~GRagR~g--~~g~~i~~~~~~e~~~~~~l 406 (579)
T 3sqw_A 362 EVLQ----IGVPS------ELANYIHRIGRTARSG--KEGSSVLFICKDELPFVREL 406 (579)
T ss_dssp EEEE----ESCCS------STTHHHHHHTTSSCTT--CCEEEEEEEEGGGHHHHHHH
T ss_pred EEEE----cCCCC------CHHHhhhhccccccCC--CCceEEEEEcccHHHHHHHH
Confidence 9999 55543 5668999999999987 67999999999888777665
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=449.06 Aligned_cols=378 Identities=26% Similarity=0.419 Sum_probs=286.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
|. |+|+|.++++.+.. +++++|+||||||||++|+++++..+.. ++ +++|++|+++|+.|+++++.+.|+
T Consensus 85 f~-L~~~Q~eai~~l~~-g~~vLV~apTGSGKTlva~lai~~~l~~---g~--rvL~l~PtkaLa~Q~~~~l~~~~~--- 154 (1010)
T 2xgj_A 85 FT-LDPFQDTAISCIDR-GESVLVSAHTSAGKTVVAEYAIAQSLKN---KQ--RVIYTSPIKALSNQKYRELLAEFG--- 154 (1010)
T ss_dssp SC-CCHHHHHHHHHHHH-TCEEEEECCTTSCHHHHHHHHHHHHHHT---TC--EEEEEESSHHHHHHHHHHHHHHHS---
T ss_pred CC-CCHHHHHHHHHHHc-CCCEEEECCCCCChHHHHHHHHHHHhcc---CC--eEEEECChHHHHHHHHHHHHHHhC---
Confidence 54 99999999999887 5669999999999999999999988754 44 999999999999999999998775
Q ss_pred CcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC-CCChHHHHHHHHHHHHhh
Q 000114 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQ 1497 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~-~g~~~e~~isrl~~i~~~ 1497 (2158)
+++.++|+.... ..++|+|+|||++.+++.++ ...++++++|||||||++.+. +|..++.++..
T Consensus 155 --~vglltGd~~~~----~~~~IvV~Tpe~L~~~L~~~--~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~------- 219 (1010)
T 2xgj_A 155 --DVGLMTGDITIN----PDAGCLVMTTEILRSMLYRG--SEVMREVAWVIFDEVHYMRDKERGVVWEETIIL------- 219 (1010)
T ss_dssp --CEEEECSSCEEC----TTCSEEEEEHHHHHHHHHHT--CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHH-------
T ss_pred --CEEEEeCCCccC----CCCCEEEEcHHHHHHHHHcC--cchhhcCCEEEEechhhhcccchhHHHHHHHHh-------
Confidence 578899987654 35799999999998877663 456889999999999999875 67777766543
Q ss_pred cCCCceEEEeccCCCChHHHHHHhccCC-CceEecCCCCcccccEEEEecccc----------c-----chHHHHHhcC-
Q 000114 1498 VENKIRIVALSTSLANAKDLGEWIGATS-HGLFNFPPGVRPVPLEIHIQGVDI----------T-----NFEARMQAMT- 1560 (2158)
Q Consensus 1498 ~~~~~riV~lSATl~n~~dl~~wl~~~~-~~i~~f~~~~rpv~l~~~i~~~~~----------~-----~~~~~~~~~~- 1560 (2158)
++...++|+||||++|..++++|++... ..+..+....||+|+..++..... . .+...+..+.
T Consensus 220 l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (1010)
T 2xgj_A 220 LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 299 (1010)
T ss_dssp SCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-
T ss_pred cCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhh
Confidence 3568999999999999999999997432 234445556788888776543110 0 0111111110
Q ss_pred ----------------------------hHHHHHHHHhH--hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccC
Q 000114 1561 ----------------------------KPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLL 1610 (2158)
Q Consensus 1561 ----------------------------k~~~~~i~~~~--~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~ 1610 (2158)
......+...+ ....++||||+|++.|+.++..|..........
T Consensus 300 ~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e------ 373 (1010)
T 2xgj_A 300 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDE------ 373 (1010)
T ss_dssp -----------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHH------
T ss_pred hhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHH------
Confidence 11112222222 244589999999999999997774311100000
Q ss_pred CCcccchhhH----hh--------hhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCcc
Q 000114 1611 WPAEEVEPFI----DN--------IQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAH 1678 (2158)
Q Consensus 1611 ~~~~~l~~~~----~~--------i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~ 1678 (2158)
...+.... .. .....+...+..||++|||||++.+|..+++.|++|.++|||||+++++|||+|++
T Consensus 374 --~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~ 451 (1010)
T 2xgj_A 374 --KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAK 451 (1010)
T ss_dssp --HHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBS
T ss_pred --HHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCc
Confidence 00000000 00 11244667788899999999999999999999999999999999999999999999
Q ss_pred EEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC-hHHHHHHHhh-CCCccccchhhHH
Q 000114 1679 LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP-RKEYYKKFLY-DAFPVESHLHHFL 1751 (2158)
Q Consensus 1679 ~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~-~~~~~~k~l~-~~~piES~L~~~l 1751 (2158)
++||.++..||+.. ..|.++.+|+||+|||||.|.|..|.|++++.+. ....+++++. .+.|++|.+....
T Consensus 452 ~vVI~~~~kfd~~~--~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~l~s~f~~~~ 524 (1010)
T 2xgj_A 452 TVVFTSVRKWDGQQ--FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGY 524 (1010)
T ss_dssp EEEESCSEEECSSC--EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCCCCCCCCCCH
T ss_pred eEEEeCCcccCCcC--CccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCCCcccccccCCcH
Confidence 99999999899864 3577999999999999999988899999999876 5566777765 6788999986443
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=453.20 Aligned_cols=410 Identities=25% Similarity=0.365 Sum_probs=294.2
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
+..|+|+|.++++.+.. +.++|++||||||||++|++|++..+.. ++ +++|++|+++|+.|+++++++.++
T Consensus 182 ~f~ltp~Q~~AI~~i~~-g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~--rvlvl~PtraLa~Q~~~~l~~~~~--- 252 (1108)
T 3l9o_A 182 PFTLDPFQDTAISCIDR-GESVLVSAHTSAGKTVVAEYAIAQSLKN---KQ--RVIYTSPIKALSNQKYRELLAEFG--- 252 (1108)
T ss_dssp SSCCCHHHHHHHHHHTT-TCCEEEECCSSSHHHHHHHHHHHHHHHT---TC--EEEEEESSHHHHHHHHHHHHHHTS---
T ss_pred CCCCCHHHHHHHHHHHc-CCCEEEECCCCCChHHHHHHHHHHHHhc---CC--eEEEEcCcHHHHHHHHHHHHHHhC---
Confidence 44799999999999876 4569999999999999999999998855 44 999999999999999999997765
Q ss_pred CcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC-CCChHHHHHHHHHHHHhh
Q 000114 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQ 1497 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~-~g~~~e~~isrl~~i~~~ 1497 (2158)
.++.++|+.+.. ..++|+|+||+++..++.+ ....++++++|||||||++.+. +|..++.++. .
T Consensus 253 --~VglltGd~~~~----~~~~IlV~Tpe~L~~~L~~--~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~-------~ 317 (1108)
T 3l9o_A 253 --DVGLMTGDITIN----PDAGCLVMTTEILRSMLYR--GSEVMREVAWVIFDEVHYMRDKERGVVWEETII-------L 317 (1108)
T ss_dssp --SEEEECSSCBCC----CSCSEEEEEHHHHHHHHHH--CSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHH-------H
T ss_pred --CccEEeCccccC----CCCCEEEeChHHHHHHHHc--CccccccCCEEEEhhhhhccccchHHHHHHHHH-------h
Confidence 478899987754 4579999999999887766 3345889999999999999874 4665555443 3
Q ss_pred cCCCceEEEeccCCCChHHHHHHhccCCC-ceEecCCCCcccccEEEEeccccc---------------chHHHHHhcC-
Q 000114 1498 VENKIRIVALSTSLANAKDLGEWIGATSH-GLFNFPPGVRPVPLEIHIQGVDIT---------------NFEARMQAMT- 1560 (2158)
Q Consensus 1498 ~~~~~riV~lSATl~n~~dl~~wl~~~~~-~i~~f~~~~rpv~l~~~i~~~~~~---------------~~~~~~~~~~- 1560 (2158)
++.+.|+|+||||++|..+++.|++.... .+..+....+|+|+..++...... .+...+..+.
T Consensus 318 l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~ 397 (1108)
T 3l9o_A 318 LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 397 (1108)
T ss_dssp SCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC--
T ss_pred cCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHh
Confidence 46789999999999999999999986442 355566678899887765322110 0111111000
Q ss_pred ----------------------------hHHHHHHHHhH--hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccc---c
Q 000114 1561 ----------------------------KPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS---A 1607 (2158)
Q Consensus 1561 ----------------------------k~~~~~i~~~~--~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~---~ 1607 (2158)
......+...+ ...+++||||+|++.|..++..|............ .
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~ 477 (1108)
T 3l9o_A 398 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTK 477 (1108)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHH
T ss_pred hhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 11112222221 34568999999999999999887442211110000 0
Q ss_pred ccCCCcccchhhHh-hhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecce
Q 000114 1608 FLLWPAEEVEPFID-NIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQ 1686 (2158)
Q Consensus 1608 ~l~~~~~~l~~~~~-~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~ 1686 (2158)
++......+...-. ......+...+..||++|||+|++.+|..+++.|++|.++|||||+++++|||+|++.+||....
T Consensus 478 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~ 557 (1108)
T 3l9o_A 478 IFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR 557 (1108)
T ss_dssp HGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSE
T ss_pred HHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCc
Confidence 00000000000000 00124466778889999999999999999999999999999999999999999999999998888
Q ss_pred eecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC-hHHHHHHHhh-CCCccccchhhHHHHHHHHHHhcCcC
Q 000114 1687 YYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP-RKEYYKKFLY-DAFPVESHLHHFLHDNFNAEIVAGVI 1764 (2158)
Q Consensus 1687 ~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~-~~~~~~k~l~-~~~piES~L~~~l~d~l~aeI~~~~i 1764 (2158)
.|++..+ .+.|..+|+||+|||||.|.+..|.|++++.+. ....+++++. .+.|++|.+.......+| -+..+.+
T Consensus 558 ~~d~~~~--r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~y~~iln-ll~~~~~ 634 (1108)
T 3l9o_A 558 KWDGQQF--RWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILN-LMRVEGI 634 (1108)
T ss_dssp EESSSCE--EECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHH-HHHSTTC
T ss_pred ccCcccc--ccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCCcccccccCCcHHHHHH-HHHhcCC
Confidence 8888743 467999999999999999999999999999876 4566777776 688999998543333333 2233333
Q ss_pred CCHHHHHHHHHHhhh
Q 000114 1765 ENKQDAVDYLTWTFM 1779 (2158)
Q Consensus 1765 ~~~qd~id~l~~t~~ 1779 (2158)
+. -+++..+|.
T Consensus 635 -~~---~~~l~~sf~ 645 (1108)
T 3l9o_A 635 -SP---EFMLEHSFF 645 (1108)
T ss_dssp -CH---HHHHHHSSH
T ss_pred -CH---HHHHHHHHH
Confidence 22 345555554
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-39 Score=446.85 Aligned_cols=382 Identities=26% Similarity=0.402 Sum_probs=290.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.|+++|.++++.++.+ ++++++||||||||++|++++...+.. +.++||++|+++|+.|+++.|.+.+
T Consensus 39 ~l~~~Q~~aI~~il~g-~~vlv~apTGsGKTlv~~~~i~~~~~~-----------g~~vlvl~PtraLa~Q~~~~l~~~~ 106 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQG-DSVFVAAHTSAGKTVVAEYAIAMAHRN-----------MTKTIYTSPIKALSNQKFRDFKETF 106 (997)
T ss_dssp CCCHHHHHHHHHHHTT-CEEEEECCTTSCSHHHHHHHHHHHHHT-----------TCEEEEEESCGGGHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHcC-CCEEEEECCCCcHHHHHHHHHHHHHhc-----------CCeEEEEeCCHHHHHHHHHHHHHHc
Confidence 5899999999998876 569999999999999999999887653 2489999999999999999999976
Q ss_pred ccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CChhhHHHHHHHHHHH
Q 000114 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQ 653 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~iv~r~~~~ 653 (2158)
. +++++.++|+..... .++|+|+||+++........ ..+.++++|||||||++.+ ++|..++.++..
T Consensus 107 ~--~~~v~~l~G~~~~~~----~~~IlV~Tpe~L~~~l~~~~--~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~---- 174 (997)
T 4a4z_A 107 D--DVNIGLITGDVQINP----DANCLIMTTEILRSMLYRGA--DLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIM---- 174 (997)
T ss_dssp ----CCEEEECSSCEECT----TSSEEEEEHHHHHHHHHHTC--SGGGGEEEEEECCTTCCCTTCTTCCHHHHHHH----
T ss_pred C--CCeEEEEeCCCccCC----CCCEEEECHHHHHHHHHhCc--hhhcCCCEEEEECcccccccchHHHHHHHHHh----
Confidence 5 678999999886553 58999999999844333322 4578899999999999988 699999987654
Q ss_pred HhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEee-------ccCCh--hHHHH----H--
Q 000114 654 IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI-------QVKKP--LQRFQ----L-- 718 (2158)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~-------~~~~~--~~~~~----~-- 718 (2158)
.+..+++|+||||+||..+++.|++......++.+...+||+|+...+... ..... ...+. .
T Consensus 175 ---l~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 251 (997)
T 4a4z_A 175 ---LPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILN 251 (997)
T ss_dssp ---SCTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC
T ss_pred ---cccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhh
Confidence 357899999999999999999999977667788899999999998765420 00000 00000 0
Q ss_pred -------------------------------------------------------------------hhHHHHHHHH---
Q 000114 719 -------------------------------------------------------------------MNDLCYEKVV--- 728 (2158)
Q Consensus 719 -------------------------------------------------------------------l~~~~~~~i~--- 728 (2158)
.....+..+.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l 331 (997)
T 4a4z_A 252 GESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYL 331 (997)
T ss_dssp -----------------------------------------------------------------CCCCTTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHH
Confidence 0000111222
Q ss_pred HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhc--------cCcchhhhhccCCeEEe
Q 000114 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDM--------VKSNDLKDLLPYGFAIH 800 (2158)
Q Consensus 729 ~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~l~~ll~~gv~~h 800 (2158)
...+..++||||+|++.|+.++..|...++....-. ..-...+...... .....+..++..||++|
T Consensus 332 ~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~------~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~ 405 (997)
T 4a4z_A 332 RKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEK------SQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVH 405 (997)
T ss_dssp HHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHH------HHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEE
T ss_pred HhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHH------HHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeee
Confidence 222356999999999999999998865433221000 0001111111111 12234678889999999
Q ss_pred cCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCcc
Q 000114 801 HAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYG 880 (2158)
Q Consensus 801 Hagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G 880 (2158)
||||++.+|..+++.|++|.++|||||+++++|||+|+++||+.+...||+.. ..++|+.+|+||+|||||.|.+..|
T Consensus 406 H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~--~~~~s~~~y~Qr~GRAGR~G~~~~G 483 (997)
T 4a4z_A 406 HGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNG--LRELTPGEFTQMAGRAGRRGLDSTG 483 (997)
T ss_dssp CTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETTE--EEECCHHHHHHHHGGGCCTTTCSSE
T ss_pred cCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCcc--CCCCCHHHHhHHhcccccCCCCcce
Confidence 99999999999999999999999999999999999999999998887787653 5688999999999999999999999
Q ss_pred EEEEEcCC--CcHHHHHHh-hcCCCcccchhhHh
Q 000114 881 EGIIITGH--SELRYYLSL-MNQQLPIESQFVSK 911 (2158)
Q Consensus 881 ~~iil~~~--~~~~~y~~l-l~~~~pieS~l~~~ 911 (2158)
.+++++.. .+...+.++ ...+.|+.|++...
T Consensus 484 ~vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~~ 517 (997)
T 4a4z_A 484 TVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLT 517 (997)
T ss_dssp EEEEECCSSCCCHHHHHHHHHSCCCCCCCCCCCC
T ss_pred EEEEecCCCcchHHHHHHHhcCCCcccccccccc
Confidence 99999943 455666665 35677888877544
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-39 Score=429.52 Aligned_cols=365 Identities=17% Similarity=0.225 Sum_probs=269.9
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcC-CCcEEEEccCCchhHHHHHHHHHHHHHhhcC--CCceEEEEEcccHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASE--TGVMRAVYIAPLEA 1401 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~-~~nvli~ApTGSGKTl~a~l~il~~l~~~~~--~~~~~~v~IaP~ra 1401 (2158)
.|+....+.+.. ||..|+|+|.++++.++.+ +.+++++||||||||++|++|+++.+..... ..++++|||+|+++
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHH
Confidence 366677777765 7999999999999999964 5689999999999999999999999877421 12348999999999
Q ss_pred HHHHHHHHHHHHhcC---CCCcEEEEEcCCcchhhh--c--ccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccc
Q 000114 1402 LAKERYRDWEIKFGQ---GLGMRVVELTGETAMDLK--L--LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 1474 (2158)
Q Consensus 1402 La~q~~~~~~~~f~~---~~g~~v~~ltG~~~~~~~--~--l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH 1474 (2158)
|+.|+++.+++.+.. ..+..+..+.|+...... . ...++|+|+||+++..++.++. ...++++++|||||||
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~-~~~~~~~~~lViDEah 236 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS-NKFFRFVDYKVLDEAD 236 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH-HHHCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcc-ccccccceEEEEeCHH
Confidence 999999999964432 124567777877654321 1 2367999999999988887642 2357889999999999
Q ss_pred cccCC-CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HHHHHHhccCCCceE-ecCCCCccc---ccEEEEeccc
Q 000114 1475 LIGGQ-GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLF-NFPPGVRPV---PLEIHIQGVD 1548 (2158)
Q Consensus 1475 ~l~~~-~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~dl~~wl~~~~~~i~-~f~~~~rpv---~l~~~i~~~~ 1548 (2158)
++.++ .++.++.++..+.........+.|++++|||+++. .++..++......++ ...+...+. .+......
T Consensus 237 ~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 314 (563)
T 3i5x_A 237 RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVI-- 314 (563)
T ss_dssp HHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEE--
T ss_pred HHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEE--
Confidence 99876 46777778777776655555688999999999884 556555544432222 111111111 11111111
Q ss_pred ccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHH
Q 000114 1549 ITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEML 1628 (2158)
Q Consensus 1549 ~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L 1628 (2158)
..................+... ..++++||||+|++.|..++..|.....
T Consensus 315 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~----------------------------- 364 (563)
T 3i5x_A 315 SEKFANSIFAAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFK----------------------------- 364 (563)
T ss_dssp ESSTTHHHHHHHHHHHHHHHHT-TTCCEEEEECSCHHHHHHHHHHHHHHHT-----------------------------
T ss_pred CchhHhhHHHHHHHHHHHHhhc-CCCCcEEEEcCcHHHHHHHHHHHHHhcc-----------------------------
Confidence 1111222222222222222222 5677899999999999999977643110
Q ss_pred HHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhc
Q 000114 1629 KATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMG 1708 (2158)
Q Consensus 1629 ~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~G 1708 (2158)
.+..+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++.+|| ++..|.++.+|+||+|
T Consensus 365 ---~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI----------~~~~p~s~~~y~Qr~G 431 (563)
T 3i5x_A 365 ---KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVL----------QIGVPSELANYIHRIG 431 (563)
T ss_dssp ---TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEE----------EESCCSSTTHHHHHHT
T ss_pred ---CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEE----------EECCCCchhhhhhhcC
Confidence 145689999999999999999999999999999999999999999999998 5667778999999999
Q ss_pred cCCCCCCCCceEEEEEecCChHHHHHHHhh
Q 000114 1709 HASRPLLDNSGKCVILCHAPRKEYYKKFLY 1738 (2158)
Q Consensus 1709 RaGR~g~d~~G~~iil~~~~~~~~~~k~l~ 1738 (2158)
||||.| ..|.|++++...+..+++.+..
T Consensus 432 RagR~g--~~g~~i~~~~~~e~~~~~~l~~ 459 (563)
T 3i5x_A 432 RTARSG--KEGSSVLFICKDELPFVRELED 459 (563)
T ss_dssp TSSCTT--CCEEEEEEEEGGGHHHHHHHHH
T ss_pred ccccCC--CCceEEEEEchhHHHHHHHHHH
Confidence 999987 7899999999988888877653
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=404.13 Aligned_cols=342 Identities=18% Similarity=0.222 Sum_probs=254.6
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~ia 557 (2158)
.+++++.+.+ .||..|+|+|.++++.++.+ +.+++++||||||||++|++|+++.+.... .+.++||++
T Consensus 31 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~ 102 (412)
T 3fht_A 31 RLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN--------KYPQCLCLS 102 (412)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS--------CSCCEEEEC
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC--------CCCCEEEEC
Confidence 4577777666 68999999999999999986 567999999999999999999998875432 345899999
Q ss_pred ccHHHHHHHHHHHHhhcccC-CcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccc
Q 000114 558 PMKALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 558 P~kaLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
|+++|+.|+++.+.++.... ++.+....|+..........++|+|+||+++..+.++.. ...+.++++|||||||++.
T Consensus 103 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~-~~~~~~~~~iViDEah~~~ 181 (412)
T 3fht_A 103 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLK-FIDPKKIKVFVLDEADVMI 181 (412)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSC-SSCGGGCCEEEEETHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcC-CcChhhCcEEEEeCHHHHh
Confidence 99999999999999876653 678888888887766666678999999999854443322 2456889999999999987
Q ss_pred c-C-ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcc--cccceeEEEeeccCCh
Q 000114 637 D-N-RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR--PVPLSQQYIGIQVKKP 712 (2158)
Q Consensus 637 d-~-rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~r--pv~l~~~~~~~~~~~~ 712 (2158)
+ . +...+..+ ....+...|++++|||+++ .+..+.......+......... +..+.+.+.. ....
T Consensus 182 ~~~~~~~~~~~~-------~~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 250 (412)
T 3fht_A 182 ATQGHQDQSIRI-------QRMLPRNCQMLLFSATFED--SVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVL--CSSR 250 (412)
T ss_dssp STTTTHHHHHHH-------HHTSCTTCEEEEEESCCCH--HHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEE--CSSH
T ss_pred hcCCcHHHHHHH-------HhhCCCCceEEEEEeecCH--HHHHHHHHhcCCCeEEeeccccccccCceEEEEE--cCCh
Confidence 6 2 32222222 2234668899999999984 3334433322233322222111 1122222222 2222
Q ss_pred hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhh
Q 000114 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (2158)
Q Consensus 713 ~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l 792 (2158)
..+...+. .+......+++||||++++.+..++..|...+
T Consensus 251 ~~~~~~l~-----~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~----------------------------------- 290 (412)
T 3fht_A 251 DEKFQALC-----NLYGAITIAQAMIFCHTRKTASWLAAELSKEG----------------------------------- 290 (412)
T ss_dssp HHHHHHHH-----HHHHHHSSSEEEEECSSHHHHHHHHHHHHHTT-----------------------------------
T ss_pred HHHHHHHH-----HHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCC-----------------------------------
Confidence 22222222 22333457899999999999999999987642
Q ss_pred ccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccC
Q 000114 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2158)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2158)
.++.++||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+++.|.++. .+.|..+|+||+||||
T Consensus 291 --~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~----~~~s~~~~~Qr~GR~g 364 (412)
T 3fht_A 291 --HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD----GNPDNETYLHRIGRTG 364 (412)
T ss_dssp --CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSS----SSBCHHHHHHHHTTSS
T ss_pred --CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCC----CCcchheeecccCccc
Confidence 3578899999999999999999999999999999999999999999999955444432 3458999999999999
Q ss_pred CCCCCCccEEEEEcCCCc
Q 000114 873 RPQYDSYGEGIIITGHSE 890 (2158)
Q Consensus 873 R~g~d~~G~~iil~~~~~ 890 (2158)
|.| ..|.++++++..+
T Consensus 365 R~g--~~g~~~~~~~~~~ 380 (412)
T 3fht_A 365 RFG--KRGLAVNMVDSKH 380 (412)
T ss_dssp CTT--CCEEEEEEECSHH
T ss_pred CCC--CCceEEEEEcChh
Confidence 987 6799999998765
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=407.58 Aligned_cols=351 Identities=19% Similarity=0.270 Sum_probs=255.4
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCC--------CC--CCCC
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRND--------DG--SFNH 548 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~--------~~--~~~~ 548 (2158)
.|++++...+ .||.+|+|+|.++++.++.+ ++++++||||||||++|++|+++.+...... .+ ....
T Consensus 21 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (417)
T 2i4i_A 21 EMGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRK 99 (417)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHccC-CCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccccccccc
Confidence 4678888777 68999999999999988776 5599999999999999999999988654211 00 0011
Q ss_pred CCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccc
Q 000114 549 SNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVK 625 (2158)
Q Consensus 549 ~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~ 625 (2158)
..+++||++|+++|+.|+++.+.+++...++++..++|+....... ..+++|+|+||+++..+..... ..+.+++
T Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~--~~~~~~~ 177 (417)
T 2i4i_A 100 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGK--IGLDFCK 177 (417)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS--BCCTTCC
T ss_pred CCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCC--cChhhCc
Confidence 3468999999999999999999998888889999999987655432 3468999999999844444322 4577899
Q ss_pred eEEeeccccccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCC--ccccccee
Q 000114 626 LLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNS--YRPVPLSQ 702 (2158)
Q Consensus 626 lIIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~--~rpv~l~~ 702 (2158)
+|||||||++.+ .+++.+..++.... .......+++++|||+++ .+..++........+..... ..+..+.+
T Consensus 178 ~iViDEah~~~~~~~~~~~~~i~~~~~---~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 252 (417)
T 2i4i_A 178 YLVLDEADRMLDMGFEPQIRRIVEQDT---MPPKGVRHTMMFSATFPK--EIQMLARDFLDEYIFLAVGRVGSTSENITQ 252 (417)
T ss_dssp EEEESSHHHHHHTTCHHHHHHHHTSSS---CCCBTTBEEEEEESCCCH--HHHHHHHHHCSSCEEEEEC----CCSSEEE
T ss_pred EEEEEChhHhhccCcHHHHHHHHHhcc---CCCcCCcEEEEEEEeCCH--HHHHHHHHHcCCCEEEEeCCCCCCccCceE
Confidence 999999999876 46666665543210 011236789999999974 33333332222222222111 11223333
Q ss_pred EEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhh
Q 000114 703 QYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD 782 (2158)
Q Consensus 703 ~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 782 (2158)
.++..... .+.. .+.+.+.....++++||||++++.+..++..|...+
T Consensus 253 ~~~~~~~~---~~~~----~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~------------------------- 300 (417)
T 2i4i_A 253 KVVWVEES---DKRS----FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG------------------------- 300 (417)
T ss_dssp EEEECCGG---GHHH----HHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTT-------------------------
T ss_pred EEEEeccH---hHHH----HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCC-------------------------
Confidence 33333222 1222 122222222346799999999999999999887642
Q ss_pred ccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHH
Q 000114 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862 (2158)
Q Consensus 783 ~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~ 862 (2158)
..+..+||+|+..+|..+++.|++|..+|||||+++++|+|+|++++||+ |+++. |..
T Consensus 301 ------------~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~----~~~p~------s~~ 358 (417)
T 2i4i_A 301 ------------YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN----FDLPS------DIE 358 (417)
T ss_dssp ------------CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEE----SSCCS------SHH
T ss_pred ------------CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE----EcCCC------CHH
Confidence 34778899999999999999999999999999999999999999999999 67664 888
Q ss_pred HHHHhhcccCCCCCCCccEEEEEcCCCcHHHHH
Q 000114 863 DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 863 ~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~ 895 (2158)
+|+||+|||||.| ..|.|+++++..+...+.
T Consensus 359 ~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~~~ 389 (417)
T 2i4i_A 359 EYVHRIGRTGRVG--NLGLATSFFNERNINITK 389 (417)
T ss_dssp HHHHHHTTBCC----CCEEEEEEECGGGGGGHH
T ss_pred HHHHhcCccccCC--CCceEEEEEccccHHHHH
Confidence 9999999999987 669999999987755444
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-38 Score=403.87 Aligned_cols=334 Identities=18% Similarity=0.262 Sum_probs=247.1
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcC---CCceEEEEEcccHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE---TGVMRAVYIAPLEA 1401 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~---~~~~~~v~IaP~ra 1401 (2158)
.|+....+.+.. ||..|+|+|.++++.++.+ .+++++||||||||++|++|++.++..... .+++++||++||++
T Consensus 62 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g-~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~Ptre 140 (434)
T 2db3_A 62 DLRDIIIDNVNKSGYKIPTPIQKCSIPVISSG-RDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRE 140 (434)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHH
Confidence 456666777765 7999999999999999875 559999999999999999999999876321 22458999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC
Q 000114 1402 LAKERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2158)
Q Consensus 1402 La~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~ 1478 (2158)
|+.|+++.++ ++....++++..++|+..... .....++|+|+||+++..++.+. ...+++++++|+||||++.+
T Consensus 141 La~Q~~~~~~-~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~--~~~l~~~~~lVlDEah~~~~ 217 (434)
T 2db3_A 141 LAIQIFNEAR-KFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT--FITFEDTRFVVLDEADRMLD 217 (434)
T ss_dssp HHHHHHHHHH-HHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT--SCCCTTCCEEEEETHHHHTS
T ss_pred HHHHHHHHHH-HHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhC--CcccccCCeEEEccHhhhhc
Confidence 9999999998 566556788899999877542 23346799999999998887763 34588999999999999987
Q ss_pred CCCChHHHHHHHHHHHHhh--cCCCceEEEeccCCCCh-HHHHH-HhccCCCceEecCC-CCcccccEEEEecccccchH
Q 000114 1479 QGGPVLEVIVSRMRYIASQ--VENKIRIVALSTSLANA-KDLGE-WIGATSHGLFNFPP-GVRPVPLEIHIQGVDITNFE 1553 (2158)
Q Consensus 1479 ~~g~~~e~~isrl~~i~~~--~~~~~riV~lSATl~n~-~dl~~-wl~~~~~~i~~f~~-~~rpv~l~~~i~~~~~~~~~ 1553 (2158)
.+ +...++.+... .....|++++|||+++. ..++. |+. .. ..+.... ......+...+.........
T Consensus 218 ~g------f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~-~~-~~i~~~~~~~~~~~i~~~~~~~~~~~k~ 289 (434)
T 2db3_A 218 MG------FSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLK-NY-VFVAIGIVGGACSDVKQTIYEVNKYAKR 289 (434)
T ss_dssp TT------THHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCS-SC-EEEEESSTTCCCTTEEEEEEECCGGGHH
T ss_pred cC------cHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhcc-CC-EEEEeccccccccccceEEEEeCcHHHH
Confidence 64 22333333333 24678999999999753 33332 332 11 1111111 11111222222222111110
Q ss_pred HHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhc
Q 000114 1554 ARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (2158)
Q Consensus 1554 ~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (2158)
.....+.. ....++||||++++.|..++..|.. .+
T Consensus 290 --------~~l~~~l~--~~~~~~lVF~~t~~~a~~l~~~L~~-----------------------------------~~ 324 (434)
T 2db3_A 290 --------SKLIEILS--EQADGTIVFVETKRGADFLASFLSE-----------------------------------KE 324 (434)
T ss_dssp --------HHHHHHHH--HCCTTEEEECSSHHHHHHHHHHHHH-----------------------------------TT
T ss_pred --------HHHHHHHH--hCCCCEEEEEeCcHHHHHHHHHHHh-----------------------------------CC
Confidence 11111222 2234599999999999999876632 24
Q ss_pred ccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCC
Q 000114 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRP 1713 (2158)
Q Consensus 1634 ~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~ 1713 (2158)
..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++.+|| +++.|.++.+|+||+|||||.
T Consensus 325 ~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI----------~~d~p~~~~~y~qriGR~gR~ 394 (434)
T 2db3_A 325 FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVI----------NYDMPSKIDDYVHRIGRTGRV 394 (434)
T ss_dssp CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEE----------ESSCCSSHHHHHHHHTTSSCT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEE----------EECCCCCHHHHHHHhcccccC
Confidence 5689999999999999999999999999999999999999999999999 667788999999999999998
Q ss_pred CCCCceEEEEEecCC
Q 000114 1714 LLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1714 g~d~~G~~iil~~~~ 1728 (2158)
| ..|.|++++.+.
T Consensus 395 g--~~G~a~~~~~~~ 407 (434)
T 2db3_A 395 G--NNGRATSFFDPE 407 (434)
T ss_dssp T--CCEEEEEEECTT
T ss_pred C--CCCEEEEEEecc
Confidence 7 789999998854
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=439.34 Aligned_cols=375 Identities=26% Similarity=0.429 Sum_probs=288.7
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.|+|+|.++++.++.+ ++++++||||||||++|++++...+.. ++ +++|++|+++|+.|+++++++.|+ ++
T Consensus 39 ~l~~~Q~~aI~~il~g-~~vlv~apTGsGKTlv~~~~i~~~~~~---g~--~vlvl~PtraLa~Q~~~~l~~~~~---~~ 109 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQG-DSVFVAAHTSAGKTVVAEYAIAMAHRN---MT--KTIYTSPIKALSNQKFRDFKETFD---DV 109 (997)
T ss_dssp CCCHHHHHHHHHHHTT-CEEEEECCTTSCSHHHHHHHHHHHHHT---TC--EEEEEESCGGGHHHHHHHHHTTC-----C
T ss_pred CCCHHHHHHHHHHHcC-CCEEEEECCCCcHHHHHHHHHHHHHhc---CC--eEEEEeCCHHHHHHHHHHHHHHcC---CC
Confidence 4899999999999875 569999999999999999999887654 44 899999999999999999996554 57
Q ss_pred EEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC-CCChHHHHHHHHHHHHhhcC
Q 000114 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQVE 1499 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~-~g~~~e~~isrl~~i~~~~~ 1499 (2158)
+++.++|+...+ ..++|+|+||+++.+++.+ ....++++++|||||||++.++ +|..++.++.. ++
T Consensus 110 ~v~~l~G~~~~~----~~~~IlV~Tpe~L~~~l~~--~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~-------l~ 176 (997)
T 4a4z_A 110 NIGLITGDVQIN----PDANCLIMTTEILRSMLYR--GADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIM-------LP 176 (997)
T ss_dssp CEEEECSSCEEC----TTSSEEEEEHHHHHHHHHH--TCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHH-------SC
T ss_pred eEEEEeCCCccC----CCCCEEEECHHHHHHHHHh--CchhhcCCCEEEEECcccccccchHHHHHHHHHh-------cc
Confidence 899999987654 4579999999999877655 3446789999999999999885 68888876643 36
Q ss_pred CCceEEEeccCCCChHHHHHHhccCC-CceEecCCCCcccccEEEEeccccc--------c-----hHH-----------
Q 000114 1500 NKIRIVALSTSLANAKDLGEWIGATS-HGLFNFPPGVRPVPLEIHIQGVDIT--------N-----FEA----------- 1554 (2158)
Q Consensus 1500 ~~~riV~lSATl~n~~dl~~wl~~~~-~~i~~f~~~~rpv~l~~~i~~~~~~--------~-----~~~----------- 1554 (2158)
.++++|+||||++|..++++|++... ..++.+....||+|+..++...... . +..
T Consensus 177 ~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 256 (997)
T 4a4z_A 177 QHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAK 256 (997)
T ss_dssp TTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----
T ss_pred cCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccc
Confidence 68999999999999999999998643 5677788889999998776421100 0 000
Q ss_pred ------------------------H----------------------------------HHhcChHHHHHHHHhHh--cC
Q 000114 1555 ------------------------R----------------------------------MQAMTKPTFTAIVQHAK--NE 1574 (2158)
Q Consensus 1555 ------------------------~----------------------------------~~~~~k~~~~~i~~~~~--~~ 1574 (2158)
+ .....+..+..+...+. ..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~ 336 (997)
T 4a4z_A 257 GAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKREL 336 (997)
T ss_dssp ------------------------------------------------------------CCCCTTHHHHHHHHHHHTTC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCC
Confidence 0 00012223334443332 34
Q ss_pred CCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhh----Hhh--------hhHHHHHHHhcccEEEecCC
Q 000114 1575 KPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPF----IDN--------IQEEMLKATLRHGVGYLHEG 1642 (2158)
Q Consensus 1575 ~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~----~~~--------i~d~~L~~~l~~gv~~~H~~ 1642 (2158)
.++||||+|++.|+.++..|.......... ...+..+ ... .....++..+..||++|||+
T Consensus 337 ~~~IVF~~sr~~~e~la~~L~~~~~~~~~e--------~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~g 408 (997)
T 4a4z_A 337 LPMVVFVFSKKRCEEYADWLEGINFCNNKE--------KSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGG 408 (997)
T ss_dssp CSEEEECSCHHHHHHHHHTTTTCCCCCHHH--------HHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTT
T ss_pred CCEEEEECCHHHHHHHHHHHhcCCCCCHHH--------HHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCC
Confidence 689999999999999997774311100000 0011111 111 12245677888999999999
Q ss_pred CCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEE
Q 000114 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2158)
Q Consensus 1643 l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~i 1722 (2158)
|++.+|..+++.|.+|.++|||||+++++|||+|++.||+.+...||+. .+.|++..+|+||+|||||.|.+..|.|+
T Consensus 409 l~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~--~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi 486 (997)
T 4a4z_A 409 LLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGN--GLRELTPGEFTQMAGRAGRRGLDSTGTVI 486 (997)
T ss_dssp SCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETT--EEEECCHHHHHHHHGGGCCTTTCSSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCc--cCCCCCHHHHhHHhcccccCCCCcceEEE
Confidence 9999999999999999999999999999999999999999999999986 46789999999999999999999999999
Q ss_pred EEecC--ChHHHHHHHhh-CCCccccch
Q 000114 1723 ILCHA--PRKEYYKKFLY-DAFPVESHL 1747 (2158)
Q Consensus 1723 il~~~--~~~~~~~k~l~-~~~piES~L 1747 (2158)
+++.. .....+++++. .+.+++|.+
T Consensus 487 ~l~~~~~~~~~~~~~~i~~~~~~l~s~~ 514 (997)
T 4a4z_A 487 VMAYNSPLSIATFKEVTMGVPTRLQSQF 514 (997)
T ss_dssp EECCSSCCCHHHHHHHHHSCCCCCCCCC
T ss_pred EecCCCcchHHHHHHHhcCCCccccccc
Confidence 99943 35566776665 788888865
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-38 Score=403.05 Aligned_cols=340 Identities=18% Similarity=0.294 Sum_probs=256.7
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.|++.+...+ .||.+|+|+|.++++.++.++ +++++||||||||++|++|+++.+... ..+.++||++|
T Consensus 43 ~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~-~~lv~a~TGsGKT~~~~~~~~~~l~~~--------~~~~~~lil~P 113 (410)
T 2j0s_A 43 GLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGR-DVIAQSQSGTGKTATFSISVLQCLDIQ--------VRETQALILAP 113 (410)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTC-CEEEECCTTSSHHHHHHHHHHHTCCTT--------SCSCCEEEECS
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCC-CEEEECCCCCCchHHHHHHHHHHHhhc--------cCCceEEEEcC
Confidence 3667777666 689999999999999988874 599999999999999999999876432 13458999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
+++|+.|+++.+.++....++++..++|+....... ...++|+|+||+++..+.++.. ..+..+++||+||||.+
T Consensus 114 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~--~~~~~~~~vViDEah~~ 191 (410)
T 2j0s_A 114 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS--LRTRAIKMLVLDEADEM 191 (410)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTS--SCCTTCCEEEEETHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCC--ccHhheeEEEEccHHHH
Confidence 999999999999998888889999999988765432 2467999999999844443322 34678999999999988
Q ss_pred cc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCC--cccccceeEEEeeccCCh
Q 000114 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNS--YRPVPLSQQYIGIQVKKP 712 (2158)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~--~rpv~l~~~~~~~~~~~~ 712 (2158)
.+ .+...+..++ ...+...+++++|||+++ ++..++......+....... ..+..+.+.+......
T Consensus 192 ~~~~~~~~~~~i~-------~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 260 (410)
T 2j0s_A 192 LNKGFKEQIYDVY-------RYLPPATQVVLISATLPH--EILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVERE-- 260 (410)
T ss_dssp TSTTTHHHHHHHH-------TTSCTTCEEEEEESCCCH--HHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESST--
T ss_pred HhhhhHHHHHHHH-------HhCccCceEEEEEcCCCH--HHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcH--
Confidence 76 4444443332 334568899999999983 45555544333333332211 1222333333333222
Q ss_pred hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhh
Q 000114 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (2158)
Q Consensus 713 ~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l 792 (2158)
..+...+.+ +......+++||||++++.+..++..|...+
T Consensus 261 ~~k~~~l~~-----~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~----------------------------------- 300 (410)
T 2j0s_A 261 EWKFDTLCD-----LYDTLTITQAVIFCNTKRKVDWLTEKMREAN----------------------------------- 300 (410)
T ss_dssp THHHHHHHH-----HHHHHTSSEEEEECSSHHHHHHHHHHHHHTT-----------------------------------
T ss_pred HhHHHHHHH-----HHHhcCCCcEEEEEcCHHHHHHHHHHHHhCC-----------------------------------
Confidence 222222222 2233446799999999999999999887643
Q ss_pred ccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccC
Q 000114 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2158)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2158)
.++..+||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. +..+|+||+||||
T Consensus 301 --~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~----~~~p~------s~~~~~Qr~GR~g 368 (410)
T 2j0s_A 301 --FTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN----YDLPN------NRELYIHRIGRSG 368 (410)
T ss_dssp --CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE----SSCCS------SHHHHHHHHTTSS
T ss_pred --CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEE----ECCCC------CHHHHHHhccccc
Confidence 34678899999999999999999999999999999999999999999999 66664 7889999999999
Q ss_pred CCCCCCccEEEEEcCCCcHHHHHH
Q 000114 873 RPQYDSYGEGIIITGHSELRYYLS 896 (2158)
Q Consensus 873 R~g~d~~G~~iil~~~~~~~~y~~ 896 (2158)
|.| ..|.++++++..+...+.+
T Consensus 369 R~g--~~g~~~~~~~~~~~~~~~~ 390 (410)
T 2j0s_A 369 RYG--RKGVAINFVKNDDIRILRD 390 (410)
T ss_dssp GGG--CCEEEEEEEEGGGHHHHHH
T ss_pred CCC--CceEEEEEecHHHHHHHHH
Confidence 987 6799999999888665544
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=396.13 Aligned_cols=346 Identities=19% Similarity=0.285 Sum_probs=253.0
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCC-CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSA-DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~-~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
|++.+...+ .||.+|+|+|.++++.++.++ .+++++||||+|||++|+++++..+.... .+.++||++|
T Consensus 12 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~P 83 (395)
T 3pey_A 12 LAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED--------ASPQAICLAP 83 (395)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC--------CSCCEEEECS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC--------CCccEEEECC
Confidence 566666666 689999999999999999873 67999999999999999999998875421 3458999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccC
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN 638 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~ 638 (2158)
+++|+.|+++.+.++....++.+...+|+..... ....++|+|+||+++....+... ..+.++++|||||||.+.+.
T Consensus 84 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~T~~~l~~~~~~~~--~~~~~~~~iIiDEah~~~~~ 160 (395)
T 3pey_A 84 SRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN-KQINAQVIVGTPGTVLDLMRRKL--MQLQKIKIFVLDEADNMLDQ 160 (395)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT-SCBCCSEEEECHHHHHHHHHTTC--BCCTTCCEEEEETHHHHHHS
T ss_pred CHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh-ccCCCCEEEEcHHHHHHHHHcCC--cccccCCEEEEEChhhhcCc
Confidence 9999999999999988777888888888754332 34478999999999844443322 45778999999999998763
Q ss_pred ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEec--CCcccccceeEEEeeccCChhHHH
Q 000114 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFD--NSYRPVPLSQQYIGIQVKKPLQRF 716 (2158)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~--~~~rpv~l~~~~~~~~~~~~~~~~ 716 (2158)
.+ +...+.++ ....+...+++++|||+++ .+..+............. ....+..+...+.. ......+.
T Consensus 161 ~~--~~~~~~~~---~~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 231 (395)
T 3pey_A 161 QG--LGDQCIRV---KRFLPKDTQLVLFSATFAD--AVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMD--CKNEADKF 231 (395)
T ss_dssp TT--HHHHHHHH---HHTSCTTCEEEEEESCCCH--HHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEE--CSSHHHHH
T ss_pred cc--cHHHHHHH---HHhCCCCcEEEEEEecCCH--HHHHHHHHhCCCCeEEEccccccccccccEEEEE--cCchHHHH
Confidence 22 22222222 2334667999999999984 333333322222221111 11112222222222 22222222
Q ss_pred HHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCC
Q 000114 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (2158)
Q Consensus 717 ~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~g 796 (2158)
..+ ..+......+++||||++++.+..++..|...+ ..
T Consensus 232 ~~l-----~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~-------------------------------------~~ 269 (395)
T 3pey_A 232 DVL-----TELYGLMTIGSSIIFVATKKTANVLYGKLKSEG-------------------------------------HE 269 (395)
T ss_dssp HHH-----HHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTT-------------------------------------CC
T ss_pred HHH-----HHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcC-------------------------------------Cc
Confidence 222 122333456899999999999999999987643 34
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCC
Q 000114 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (2158)
Q Consensus 797 v~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (2158)
+..+||+|+..+|..+++.|++|+++|||||+++++|+|+|++++||+ |+++.......|..+|+||+|||||.|
T Consensus 270 ~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~----~~~p~~~~~~~s~~~~~Qr~GR~gR~g- 344 (395)
T 3pey_A 270 VSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN----YDLPTLANGQADPATYIHRIGRTGRFG- 344 (395)
T ss_dssp CEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEE----SSCCBCTTSSBCHHHHHHHHTTSSCTT-
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEE----cCCCCCCcCCCCHHHhhHhccccccCC-
Confidence 678899999999999999999999999999999999999999999999 665544445679999999999999987
Q ss_pred CCccEEEEEcCCCcHHHHH
Q 000114 877 DSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 877 d~~G~~iil~~~~~~~~y~ 895 (2158)
..|.+++++...+...+.
T Consensus 345 -~~g~~~~~~~~~~~~~~~ 362 (395)
T 3pey_A 345 -RKGVAISFVHDKNSFNIL 362 (395)
T ss_dssp -CCEEEEEEECSHHHHHHH
T ss_pred -CCceEEEEEechHHHHHH
Confidence 669999999876544433
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=397.74 Aligned_cols=361 Identities=16% Similarity=0.232 Sum_probs=263.7
Q ss_pred CCCCCcCCCCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHhcC-CCcEEEEccCCchhHHHHHHHHHHHHHhhcC
Q 000114 1310 YPPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASE 1387 (2158)
Q Consensus 1310 ~~~~t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~-~~nvli~ApTGSGKTl~a~l~il~~l~~~~~ 1387 (2158)
..+++++.++.++....+.....+.++. ||..|+|+|.++++.++.+ +.+++++||||||||++|++|++..+.....
T Consensus 15 ~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~ 94 (412)
T 3fht_A 15 RDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK 94 (412)
T ss_dssp TCTTSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSC
T ss_pred ccCCCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCC
Confidence 3455667777888777888888888887 8999999999999999986 5779999999999999999999998876433
Q ss_pred CCceEEEEEcccHHHHHHHHHHHHHHhcCC-CCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhcccccccee
Q 000114 1388 TGVMRAVYIAPLEALAKERYRDWEIKFGQG-LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVS 1466 (2158)
Q Consensus 1388 ~~~~~~v~IaP~raLa~q~~~~~~~~f~~~-~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~ 1466 (2158)
.+ +++|++|+++|+.|+++.+++ +... .+..+....|+..........++|+|+||+++..++++.. ...+++++
T Consensus 95 ~~--~~lil~P~~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~-~~~~~~~~ 170 (412)
T 3fht_A 95 YP--QCLCLSPTYELALQTGKVIEQ-MGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLK-FIDPKKIK 170 (412)
T ss_dssp SC--CEEEECSSHHHHHHHHHHHHH-HTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSC-SSCGGGCC
T ss_pred CC--CEEEECCCHHHHHHHHHHHHH-HHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcC-CcChhhCc
Confidence 33 899999999999999999984 4433 4678888888776555545567999999999988775532 33568999
Q ss_pred EEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HHHHHHhccCCCceEecCCC-CcccccEEEE
Q 000114 1467 LFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPG-VRPVPLEIHI 1544 (2158)
Q Consensus 1467 llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~dl~~wl~~~~~~i~~f~~~-~rpv~l~~~i 1544 (2158)
++|+||||++.+..+. ...+..+...++.+.+++++|||+++. ..+........ ..+..... .....+....
T Consensus 171 ~iViDEah~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 244 (412)
T 3fht_A 171 VFVLDEADVMIATQGH-----QDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP-NVIKLKREEETLDTIKQYY 244 (412)
T ss_dssp EEEEETHHHHHSTTTT-----HHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSC-EEECCCGGGSSCTTEEEEE
T ss_pred EEEEeCHHHHhhcCCc-----HHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCC-eEEeeccccccccCceEEE
Confidence 9999999998764321 222333444556789999999999863 23333332221 12221111 1111222222
Q ss_pred ecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhh
Q 000114 1545 QGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQ 1624 (2158)
Q Consensus 1545 ~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~ 1624 (2158)
.... ...... .....+... ...+++||||++++.|..++..|..
T Consensus 245 ~~~~--~~~~~~-----~~l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~L~~---------------------------- 288 (412)
T 3fht_A 245 VLCS--SRDEKF-----QALCNLYGA-ITIAQAMIFCHTRKTASWLAAELSK---------------------------- 288 (412)
T ss_dssp EECS--SHHHHH-----HHHHHHHHH-HSSSEEEEECSSHHHHHHHHHHHHH----------------------------
T ss_pred EEcC--ChHHHH-----HHHHHHHhh-cCCCCEEEEeCCHHHHHHHHHHHHh----------------------------
Confidence 1111 111111 111122222 4567899999999999999876632
Q ss_pred HHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHH
Q 000114 1625 EEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLL 1704 (2158)
Q Consensus 1625 d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~l 1704 (2158)
.+.++.++||+|+..+|..+++.|++|+++|||||+++++|+|+|++.+|| .|+...+.....+..+|+
T Consensus 289 -------~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi----~~~~p~~~~~~~s~~~~~ 357 (412)
T 3fht_A 289 -------EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVI----NFDLPVDKDGNPDNETYL 357 (412)
T ss_dssp -------TTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEE----ESSCCBCSSSSBCHHHHH
T ss_pred -------CCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEE----EECCCCCCCCCcchheee
Confidence 245689999999999999999999999999999999999999999999999 333332222236789999
Q ss_pred HhhccCCCCCCCCceEEEEEecCCh
Q 000114 1705 QMMGHASRPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1705 Qr~GRaGR~g~d~~G~~iil~~~~~ 1729 (2158)
||+|||||.| ..|.|++++....
T Consensus 358 Qr~GR~gR~g--~~g~~~~~~~~~~ 380 (412)
T 3fht_A 358 HRIGRTGRFG--KRGLAVNMVDSKH 380 (412)
T ss_dssp HHHTTSSCTT--CCEEEEEEECSHH
T ss_pred cccCcccCCC--CCceEEEEEcChh
Confidence 9999999986 7899999998765
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-37 Score=393.45 Aligned_cols=338 Identities=21% Similarity=0.290 Sum_probs=255.3
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++.+.+.+ .||.+|+|+|.++++.++.+. +++++||||+|||++|++|++..+.... .+.++||++|+
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~-~~li~a~TGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~P~ 98 (400)
T 1s2m_A 28 LKRELLMGIFEAGFEKPSPIQEEAIPVAITGR-DILARAKNGTGKTAAFVIPTLEKVKPKL--------NKIQALIMVPT 98 (400)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTC-CEEEECCTTSCHHHHHHHHHHHHCCTTS--------CSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-CEEEECCCCcHHHHHHHHHHHHHHhhcc--------CCccEEEEcCC
Confidence 556666655 699999999999999998875 5999999999999999999998865421 34589999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHH-HHHhccCCCccccccceEEeeccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWD-IITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld-~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
++|+.|+++.+.+++...++++..++|+....... ...++|+|+||+++. .+.+.. ..+.++++||+||||++
T Consensus 99 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~---~~~~~~~~vIiDEaH~~ 175 (400)
T 1s2m_A 99 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKV---ADLSDCSLFIMDEADKM 175 (400)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC---SCCTTCCEEEEESHHHH
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCC---cccccCCEEEEeCchHh
Confidence 99999999999998888899999999987654432 357899999999984 443332 35678999999999988
Q ss_pred cc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEE-ecCCcccccceeEEEeeccCChh
Q 000114 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNSYRPVPLSQQYIGIQVKKPL 713 (2158)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~-f~~~~rpv~l~~~~~~~~~~~~~ 713 (2158)
.+ .++..++.++ ...+...+++++|||+| ..+..++......+... .........+.+.+......
T Consensus 176 ~~~~~~~~~~~i~-------~~~~~~~~~i~lSAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 243 (400)
T 1s2m_A 176 LSRDFKTIIEQIL-------SFLPPTHQSLLFSATFP--LTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEER--- 243 (400)
T ss_dssp SSHHHHHHHHHHH-------TTSCSSCEEEEEESCCC--HHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGG---
T ss_pred hhhchHHHHHHHH-------HhCCcCceEEEEEecCC--HHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechh---
Confidence 65 3333333322 23456789999999988 44555554433222222 11222222233333322221
Q ss_pred HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhc
Q 000114 714 QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLL 793 (2158)
Q Consensus 714 ~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll 793 (2158)
.+...+ ..+......+++||||++++.+..++..|...+
T Consensus 244 ~k~~~l-----~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~------------------------------------ 282 (400)
T 1s2m_A 244 QKLHCL-----NTLFSKLQINQAIIFCNSTNRVELLAKKITDLG------------------------------------ 282 (400)
T ss_dssp GHHHHH-----HHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHT------------------------------------
T ss_pred hHHHHH-----HHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcC------------------------------------
Confidence 222222 223344457899999999999999999987643
Q ss_pred cCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCC
Q 000114 794 PYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873 (2158)
Q Consensus 794 ~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR 873 (2158)
.++..+||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. |..+|+||+|||||
T Consensus 283 -~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~----~~~p~------s~~~~~Qr~GR~gR 351 (400)
T 1s2m_A 283 -YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN----FDFPK------TAETYLHRIGRSGR 351 (400)
T ss_dssp -CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEE----SSCCS------SHHHHHHHHCBSSC
T ss_pred -CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEE----eCCCC------CHHHHHHhcchhcC
Confidence 35778899999999999999999999999999999999999999999999 66664 78899999999999
Q ss_pred CCCCCccEEEEEcCCCcHHHHHHh
Q 000114 874 PQYDSYGEGIIITGHSELRYYLSL 897 (2158)
Q Consensus 874 ~g~d~~G~~iil~~~~~~~~y~~l 897 (2158)
.| ..|.|+++++..+...+.++
T Consensus 352 ~g--~~g~~~~l~~~~~~~~~~~i 373 (400)
T 1s2m_A 352 FG--HLGLAINLINWNDRFNLYKI 373 (400)
T ss_dssp TT--CCEEEEEEECGGGHHHHHHH
T ss_pred CC--CCceEEEEeccchHHHHHHH
Confidence 87 67999999999887665543
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-39 Score=420.62 Aligned_cols=349 Identities=19% Similarity=0.232 Sum_probs=143.0
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~ia 557 (2158)
.|++.+...+ .||..|+|+|.++++.++.+ +.++|++||||||||++|++|+++.+.... .++++||++
T Consensus 98 ~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~--------~~~~~lil~ 169 (479)
T 3fmp_B 98 RLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN--------KYPQCLCLS 169 (479)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS--------CSCCEEEEC
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC--------CCCcEEEEe
Confidence 4666666655 79999999999999999986 578999999999999999999998775432 345899999
Q ss_pred ccHHHHHHHHHHHHhhcccC-CcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccc
Q 000114 558 PMKALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 558 P~kaLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
|+++|+.|+++.+.++.... ++.+....|+...........+|+|+||++|..+.++.. ...+.++++|||||+|.+.
T Consensus 170 Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~~~~~iViDEah~~~ 248 (479)
T 3fmp_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLK-FIDPKKIKVFVLDEADVMI 248 (479)
T ss_dssp SSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSC-CCCGGGCCEEEECCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcC-CcCcccCCEEEEECHHHHh
Confidence 99999999999998876543 677888888877766666678999999999844443322 2456889999999999987
Q ss_pred cCChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEE-ecCC-cccccceeEEEeeccCChhH
Q 000114 637 DNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNS-YRPVPLSQQYIGIQVKKPLQ 714 (2158)
Q Consensus 637 d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~-f~~~-~rpv~l~~~~~~~~~~~~~~ 714 (2158)
+..+.. ..+ .......+..+|+|++|||+++ .+..+.......+... .... ..+..+.+.++..... ..
T Consensus 249 ~~~~~~--~~~---~~i~~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~ 319 (479)
T 3fmp_B 249 ATQGHQ--DQS---IRIQRMLPRNCQMLLFSATFED--SVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSR--DE 319 (479)
T ss_dssp TSTTHH--HHH---HHHHTTSCTTSEEEEEESCCCH--HHHHHHHHHSSSEEEEEEC-----------------------
T ss_pred hcCCcH--HHH---HHHHhhCCccceEEEEeCCCCH--HHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCH--HH
Confidence 632211 111 1223345678999999999984 3334333222222222 1111 1111222222211111 11
Q ss_pred HHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhcc
Q 000114 715 RFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLP 794 (2158)
Q Consensus 715 ~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~ 794 (2158)
+...+.. +......+++||||++++.|..++..|...+
T Consensus 320 ~~~~l~~-----~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~------------------------------------- 357 (479)
T 3fmp_B 320 KFQALCN-----LYGAITIAQAMIFCHTRKTASWLAAELSKEG------------------------------------- 357 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH-----HHhhccCCceEEEeCcHHHHHHHHHHHHhCC-------------------------------------
Confidence 1111111 1222335789999999999999998887532
Q ss_pred CCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCC
Q 000114 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (2158)
Q Consensus 795 ~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (2158)
.++.++||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+++.|.++ ..+.+..+|+||+|||||.
T Consensus 358 ~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~----~~~~s~~~~~Qr~GRagR~ 433 (479)
T 3fmp_B 358 HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDK----DGNPDNETYLHRIGRTGRF 433 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCC----ccCCCHHHHHHHhcccccC
Confidence 357788999999999999999999999999999999999999999999995544433 2345788999999999997
Q ss_pred CCCCccEEEEEcCCCcHHHHH
Q 000114 875 QYDSYGEGIIITGHSELRYYL 895 (2158)
Q Consensus 875 g~d~~G~~iil~~~~~~~~y~ 895 (2158)
| ..|.|+++++..+...+.
T Consensus 434 g--~~G~~i~~~~~~~~~~~~ 452 (479)
T 3fmp_B 434 G--KRGLAVNMVDSKHSMNIL 452 (479)
T ss_dssp ---------------------
T ss_pred C--CCceEEEEEcCcchHHHH
Confidence 7 679999999876644433
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-39 Score=417.79 Aligned_cols=366 Identities=16% Similarity=0.197 Sum_probs=159.2
Q ss_pred CCCCcCCCCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHhcC-CCcEEEEccCCchhHHHHHHHHHHHHHhhcCC
Q 000114 1311 PPPTELLDLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASET 1388 (2158)
Q Consensus 1311 ~~~t~lldl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~-~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~ 1388 (2158)
.++.++.++.+++...|.+..++.++. ||..|+|+|.++++.++.+ +.+++++||||||||++|++|++..+.....
T Consensus 83 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~- 161 (479)
T 3fmp_B 83 DPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK- 161 (479)
T ss_dssp STTSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSC-
T ss_pred CCCCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCC-
Confidence 445566777888888888888898887 8999999999999999975 5789999999999999999999988866333
Q ss_pred CceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEE
Q 000114 1389 GVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLF 1468 (2158)
Q Consensus 1389 ~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~ll 1468 (2158)
++++|||+|+++|+.|+++.+++......+..+....|+...........+|+|+||+++..++.+.. ...++++++|
T Consensus 162 -~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~~~~~i 239 (479)
T 3fmp_B 162 -YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLK-FIDPKKIKVF 239 (479)
T ss_dssp -SCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSC-CCCGGGCCEE
T ss_pred -CCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcC-CcCcccCCEE
Confidence 33899999999999999999884333234677888887766554444566999999999988876532 3356899999
Q ss_pred EecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HHHHHHhccCCCceEecCCCC-cccccEEEEec
Q 000114 1469 IIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGV-RPVPLEIHIQG 1546 (2158)
Q Consensus 1469 IiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~dl~~wl~~~~~~i~~f~~~~-rpv~l~~~i~~ 1546 (2158)
||||+|.+.+..| ...++..+...++.+.|+|++|||+++. ..++..+.... ..+...... ....+...+..
T Consensus 240 ViDEah~~~~~~~-----~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~ 313 (479)
T 3fmp_B 240 VLDEADVMIATQG-----HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP-NVIKLKREEETLDTIKQYYVL 313 (479)
T ss_dssp EECCHHHHHTSTT-----HHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSE-EEEEEC---------------
T ss_pred EEECHHHHhhcCC-----cHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCC-eEEeccccccCcCCceEEEEE
Confidence 9999999876433 3334445555667789999999999873 23443332221 111111110 01011100000
Q ss_pred ccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHH
Q 000114 1547 VDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEE 1626 (2158)
Q Consensus 1547 ~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~ 1626 (2158)
... ... .......+... ...+++||||++++.|..++..|..
T Consensus 314 ~~~--~~~-----~~~~l~~~~~~-~~~~~~lvF~~s~~~~~~l~~~L~~------------------------------ 355 (479)
T 3fmp_B 314 CSS--RDE-----KFQALCNLYGA-ITIAQAMIFCHTRKTASWLAAELSK------------------------------ 355 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eCC--HHH-----HHHHHHHHHhh-ccCCceEEEeCcHHHHHHHHHHHHh------------------------------
Confidence 000 000 00011111122 3457899999999999888865521
Q ss_pred HHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHh
Q 000114 1627 MLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQM 1706 (2158)
Q Consensus 1627 ~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr 1706 (2158)
.+.++.++||+|+..+|..+++.|++|+++|||||+++++|+|+|++.+|| .|+.........+..+|+||
T Consensus 356 -----~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI----~~d~p~~~~~~~s~~~~~Qr 426 (479)
T 3fmp_B 356 -----EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVI----NFDLPVDKDGNPDNETYLHR 426 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----CCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEE----EecCCCCCccCCCHHHHHHH
Confidence 245689999999999999999999999999999999999999999999998 23322111112567899999
Q ss_pred hccCCCCCCCCceEEEEEecCChHHHHH
Q 000114 1707 MGHASRPLLDNSGKCVILCHAPRKEYYK 1734 (2158)
Q Consensus 1707 ~GRaGR~g~d~~G~~iil~~~~~~~~~~ 1734 (2158)
+|||||.| ..|.|++++.......+.
T Consensus 427 ~GRagR~g--~~G~~i~~~~~~~~~~~~ 452 (479)
T 3fmp_B 427 IGRTGRFG--KRGLAVNMVDSKHSMNIL 452 (479)
T ss_dssp ----------------------------
T ss_pred hcccccCC--CCceEEEEEcCcchHHHH
Confidence 99999986 789999999876544333
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=399.47 Aligned_cols=340 Identities=19% Similarity=0.329 Sum_probs=244.4
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.+++++.+.+ .||..|+++|.++++.++.+.+ ++++||||||||++|++++++.+.... .+.++||++|
T Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~-~lv~a~TGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~P 116 (414)
T 3eiq_A 46 NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYD-VIAQAQSGTGKTATFAISILQQIELDL--------KATQALVLAP 116 (414)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCC-EEECCCSCSSSHHHHHHHHHHHCCTTS--------CSCCEEEECS
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCC-EEEECCCCCcccHHHHHHHHHHHhhcC--------CceeEEEEeC
Confidence 4567777766 6899999999999999988754 999999999999999999998875431 3458999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh----hccccEEEcchhHH-HHHHhccCCCccccccceEEeeccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH 633 (2158)
+++|+.|+++.+.+++...++.+..++|+....... ...++|+|+||+++ +.+.+.. ..+..+++|||||||
T Consensus 117 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~---~~~~~~~~vViDEah 193 (414)
T 3eiq_A 117 TRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRY---LSPKYIKMFVLDEAD 193 (414)
T ss_dssp SHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTS---SCSTTCCEEEECSHH
T ss_pred hHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---cccccCcEEEEECHH
Confidence 999999999999998888889999999987654432 25789999999997 5555433 345678999999999
Q ss_pred cccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecC--CcccccceeEEEeeccC
Q 000114 634 LLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDN--SYRPVPLSQQYIGIQVK 710 (2158)
Q Consensus 634 ~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~--~~rpv~l~~~~~~~~~~ 710 (2158)
.+.+ .++..+..++ .......|++++|||++ .++..+.......+...... ...+..+.+.+......
T Consensus 194 ~~~~~~~~~~~~~~~-------~~~~~~~~~i~~SAT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (414)
T 3eiq_A 194 EMLSRGFKDQIYDIF-------QKLNSNTQVVLLSATMP--SDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVERE 264 (414)
T ss_dssp HHHHTTTHHHHHHHH-------TTSCTTCEEEEECSCCC--HHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSS
T ss_pred HhhccCcHHHHHHHH-------HhCCCCCeEEEEEEecC--HHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChH
Confidence 8865 4555554443 33467899999999987 34555554433333332221 12222333333333222
Q ss_pred ChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhh
Q 000114 711 KPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2158)
Q Consensus 711 ~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 790 (2158)
. .+...+ ..+......+++||||++++.+..++..|...+
T Consensus 265 ~--~~~~~l-----~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~--------------------------------- 304 (414)
T 3eiq_A 265 E--WKLDTL-----CDLYETLTITQAVIFINTRRKVDWLTEKMHARD--------------------------------- 304 (414)
T ss_dssp T--THHHHH-----HHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTT---------------------------------
T ss_pred H--hHHHHH-----HHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcC---------------------------------
Confidence 1 122222 223344456799999999999999999887532
Q ss_pred hhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcc
Q 000114 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (2158)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GR 870 (2158)
.++..+||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+ |+++. |..+|+||+||
T Consensus 305 ----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~----~~~p~------s~~~~~Qr~GR 370 (414)
T 3eiq_A 305 ----FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YDLPT------NRENYIHRIGR 370 (414)
T ss_dssp ----CCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEE----SSCCS------STHHHHHHSCC
T ss_pred ----CeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEE----eCCCC------CHHHhhhhcCc
Confidence 35778899999999999999999999999999999999999999999999 66554 67799999999
Q ss_pred cCCCCCCCccEEEEEcCCCcHHHHHHh
Q 000114 871 AGRPQYDSYGEGIIITGHSELRYYLSL 897 (2158)
Q Consensus 871 AGR~g~d~~G~~iil~~~~~~~~y~~l 897 (2158)
|||.| ..|.|+++++..+...+.++
T Consensus 371 ~gR~g--~~g~~~~~~~~~~~~~~~~~ 395 (414)
T 3eiq_A 371 GGRFG--RKGVAINMVTEEDKRTLRDI 395 (414)
T ss_dssp C---------CEEEEECSTHHHHHHHH
T ss_pred ccCCC--CCceEEEEEcHHHHHHHHHH
Confidence 99987 67999999999887766543
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-37 Score=391.63 Aligned_cols=346 Identities=14% Similarity=0.243 Sum_probs=255.4
Q ss_pred CcccccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccH
Q 000114 1322 LPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLE 1400 (2158)
Q Consensus 1322 ~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~r 1400 (2158)
+....|.....+.++. ||..|+|+|.++++.++++ .+++++||||||||++|++|+++.+.....+. +++|++|++
T Consensus 39 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~-~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~--~~lil~Pt~ 115 (410)
T 2j0s_A 39 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKG-RDVIAQSQSGTGKTATFSISVLQCLDIQVRET--QALILAPTR 115 (410)
T ss_dssp GGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHTCCTTSCSC--CEEEECSSH
T ss_pred HhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCCchHHHHHHHHHHHhhccCCc--eEEEEcCcH
Confidence 3334566777777776 7999999999999999985 45999999999999999999998876422333 899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh---cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccccc
Q 000114 1401 ALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1401 aLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
+|+.|+++.++ .++...++++..++|+...... ....++|+|+||+++..++++. ...+.+++++|+||||++.
T Consensus 116 ~L~~q~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~--~~~~~~~~~vViDEah~~~ 192 (410)
T 2j0s_A 116 ELAVQIQKGLL-ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR--SLRTRAIKMLVLDEADEML 192 (410)
T ss_dssp HHHHHHHHHHH-HHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTT--SSCCTTCCEEEEETHHHHT
T ss_pred HHHHHHHHHHH-HHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhC--CccHhheeEEEEccHHHHH
Confidence 99999999998 5766678899999988765421 2245699999999998887763 3456889999999999987
Q ss_pred CCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCC-ce-EecC-CCCcccccEEEEecccccchHH
Q 000114 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSH-GL-FNFP-PGVRPVPLEIHIQGVDITNFEA 1554 (2158)
Q Consensus 1478 ~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~-~i-~~f~-~~~rpv~l~~~i~~~~~~~~~~ 1554 (2158)
+.. +...+..+...++...+++++|||+++. +.+++..... .. +... ....+..+...+........
T Consensus 193 ~~~------~~~~~~~i~~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 262 (410)
T 2j0s_A 193 NKG------FKEQIYDVYRYLPPATQVVLISATLPHE--ILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEW-- 262 (410)
T ss_dssp STT------THHHHHHHHTTSCTTCEEEEEESCCCHH--HHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTH--
T ss_pred hhh------hHHHHHHHHHhCccCceEEEEEcCCCHH--HHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHh--
Confidence 544 2234444555567789999999999752 2232221111 11 1111 11112222222222221111
Q ss_pred HHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcc
Q 000114 1555 RMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (2158)
Q Consensus 1555 ~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (2158)
.. ..+..+... ...+++||||++++.+..++..|.. .+.
T Consensus 263 k~-----~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~-----------------------------------~~~ 301 (410)
T 2j0s_A 263 KF-----DTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMRE-----------------------------------ANF 301 (410)
T ss_dssp HH-----HHHHHHHHH-HTSSEEEEECSSHHHHHHHHHHHHH-----------------------------------TTC
T ss_pred HH-----HHHHHHHHh-cCCCcEEEEEcCHHHHHHHHHHHHh-----------------------------------CCC
Confidence 11 111222222 3456899999999999998876632 245
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCC
Q 000114 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2158)
Q Consensus 1635 gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g 1714 (2158)
++..+||+++..+|..+++.|++|..+|||||+++++|+|+|++.+|| ++..|.+..+|+||+|||||.|
T Consensus 302 ~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi----------~~~~p~s~~~~~Qr~GR~gR~g 371 (410)
T 2j0s_A 302 TVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLII----------NYDLPNNRELYIHRIGRSGRYG 371 (410)
T ss_dssp CCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEE----------ESSCCSSHHHHHHHHTTSSGGG
T ss_pred ceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEE----------EECCCCCHHHHHHhcccccCCC
Confidence 689999999999999999999999999999999999999999999999 5667788999999999999987
Q ss_pred CCCceEEEEEecCChHHHHHHH
Q 000114 1715 LDNSGKCVILCHAPRKEYYKKF 1736 (2158)
Q Consensus 1715 ~d~~G~~iil~~~~~~~~~~k~ 1736 (2158)
..|.|++++...+...++++
T Consensus 372 --~~g~~~~~~~~~~~~~~~~i 391 (410)
T 2j0s_A 372 --RKGVAINFVKNDDIRILRDI 391 (410)
T ss_dssp --CCEEEEEEEEGGGHHHHHHH
T ss_pred --CceEEEEEecHHHHHHHHHH
Confidence 78999999998876655443
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-37 Score=388.64 Aligned_cols=339 Identities=20% Similarity=0.254 Sum_probs=249.8
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.|++.+...+ .||.+|+|+|.++++.++.+ .+++++||||+|||++|+++++..+.... .+.++||++|
T Consensus 14 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~~~~l~~~~--------~~~~~lil~P 84 (391)
T 1xti_A 14 LLKPELLRAIVDCGFEHPSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVLATLQQLEPVT--------GQVSVLVMCH 84 (391)
T ss_dssp CCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTT-CCEEEECSSCSSHHHHHHHHHHHHCCCCT--------TCCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-CcEEEECCCCCcHHHHHHHHHHHhhcccC--------CCeeEEEECC
Confidence 3566666666 58999999999999998876 55999999999999999999998864321 3458999999
Q ss_pred cHHHHHHHHHHHHhhcccC-CcEEEEEeCCCccCHhh----hccccEEEcchhHHHHHHhccCCCccccccceEEeeccc
Q 000114 559 MKALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIH 633 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH 633 (2158)
+++|+.|+++.+.++.... ++++..++|+....... ...++|+|+||+++..+.+... ..+.++++||+||||
T Consensus 85 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~--~~~~~~~~vViDEaH 162 (391)
T 1xti_A 85 TRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS--LNLKHIKHFILDECD 162 (391)
T ss_dssp CHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS--SCCTTCSEEEECSHH
T ss_pred CHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCC--ccccccCEEEEeCHH
Confidence 9999999999999887655 78999999987654432 1347999999999855554432 356789999999999
Q ss_pred ccccCChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEE-ecCCc--ccccceeEEEeeccC
Q 000114 634 LLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY-FDNSY--RPVPLSQQYIGIQVK 710 (2158)
Q Consensus 634 ~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~-f~~~~--rpv~l~~~~~~~~~~ 710 (2158)
++.+..+ +...+.++ ....+...+++++|||+++. +..++......+... ..... ....+...+......
T Consensus 163 ~~~~~~~--~~~~~~~~---~~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (391)
T 1xti_A 163 KMLEQLD--MRRDVQEI---FRMTPHEKQVMMFSATLSKE--IRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDN 235 (391)
T ss_dssp HHTSSHH--HHHHHHHH---HHTSCSSSEEEEEESSCCST--HHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGG
T ss_pred HHhhccc--hHHHHHHH---HhhCCCCceEEEEEeeCCHH--HHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCch
Confidence 9875311 11122222 23345688999999999863 222222211222222 22222 122333344333222
Q ss_pred ChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhh
Q 000114 711 KPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLK 790 (2158)
Q Consensus 711 ~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 790 (2158)
.+...+. .+.....++++||||++++.+..++..|...+
T Consensus 236 ---~~~~~l~-----~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~--------------------------------- 274 (391)
T 1xti_A 236 ---EKNRKLF-----DLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN--------------------------------- 274 (391)
T ss_dssp ---GHHHHHH-----HHHHHSCCSEEEEECSCHHHHHHHHHHHHHTT---------------------------------
T ss_pred ---hHHHHHH-----HHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCC---------------------------------
Confidence 2222221 22333467899999999999999999987643
Q ss_pred hhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcc
Q 000114 791 DLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGR 870 (2158)
Q Consensus 791 ~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GR 870 (2158)
..+..+||+|+..+|..+++.|++|..+|||||+++++|+|+|++++||+ |+++. |..+|+||+||
T Consensus 275 ----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~----~~~p~------s~~~~~Qr~GR 340 (391)
T 1xti_A 275 ----FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN----YDMPE------DSDTYLHRVAR 340 (391)
T ss_dssp ----CCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEE----SSCCS------SHHHHHHHHCB
T ss_pred ----CcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEE----eCCCC------CHHHHHHhccc
Confidence 23677899999999999999999999999999999999999999999999 66664 78899999999
Q ss_pred cCCCCCCCccEEEEEcCCCcHHHH
Q 000114 871 AGRPQYDSYGEGIIITGHSELRYY 894 (2158)
Q Consensus 871 AGR~g~d~~G~~iil~~~~~~~~y 894 (2158)
|||.| ..|.++++++..+...+
T Consensus 341 ~~R~g--~~g~~~~~~~~~~~~~~ 362 (391)
T 1xti_A 341 AGRFG--TKGLAITFVSDENDAKI 362 (391)
T ss_dssp CSSSC--CCCEEEEEECSHHHHHH
T ss_pred ccCCC--CceEEEEEEcccchHHH
Confidence 99987 67999999988654433
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=387.45 Aligned_cols=348 Identities=18% Similarity=0.268 Sum_probs=253.2
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCC-CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTD-DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~-~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa 1403 (2158)
.|+....+.++. ||..|+|+|.++++.++.++ .+++++||||||||++|+++++..+.....++ +++|++|+++|+
T Consensus 11 ~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~--~~lil~P~~~L~ 88 (395)
T 3pey_A 11 GLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASP--QAICLAPSRELA 88 (395)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSC--CEEEECSSHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCc--cEEEECCCHHHH
Confidence 456677777776 79999999999999999863 77999999999999999999998886633333 899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCCh
Q 000114 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2158)
Q Consensus 1404 ~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~ 1483 (2158)
.|+++.++ .++...++.+....|+..... ....++|+|+||+++..++++ ....+++++++|+||||++.+..+
T Consensus 89 ~q~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~iIiDEah~~~~~~~-- 162 (395)
T 3pey_A 89 RQTLEVVQ-EMGKFTKITSQLIVPDSFEKN-KQINAQVIVGTPGTVLDLMRR--KLMQLQKIKIFVLDEADNMLDQQG-- 162 (395)
T ss_dssp HHHHHHHH-HHTTTSCCCEEEESTTSSCTT-SCBCCSEEEECHHHHHHHHHT--TCBCCTTCCEEEEETHHHHHHSTT--
T ss_pred HHHHHHHH-HHhcccCeeEEEEecCchhhh-ccCCCCEEEEcHHHHHHHHHc--CCcccccCCEEEEEChhhhcCccc--
Confidence 99999998 566556778888887654332 234679999999999887765 234578899999999999876432
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChH
Q 000114 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKP 1562 (2158)
Q Consensus 1484 ~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~ 1562 (2158)
+...+..+...++.+.+++++|||+++. ..+..++......+...........+........ ...... .
T Consensus 163 ---~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~ 232 (395)
T 3pey_A 163 ---LGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCK--NEADKF-----D 232 (395)
T ss_dssp ---HHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECS--SHHHHH-----H
T ss_pred ---cHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcC--chHHHH-----H
Confidence 2333444445557789999999999863 4455544433222211111112222222222111 111111 1
Q ss_pred HHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCC
Q 000114 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (2158)
Q Consensus 1563 ~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~ 1642 (2158)
....+... ...+++||||++++.|+.++..|.. .+..+..+||+
T Consensus 233 ~l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~-----------------------------------~~~~~~~~~~~ 276 (395)
T 3pey_A 233 VLTELYGL-MTIGSSIIFVATKKTANVLYGKLKS-----------------------------------EGHEVSILHGD 276 (395)
T ss_dssp HHHHHHTT-TTSSEEEEECSCHHHHHHHHHHHHH-----------------------------------TTCCCEEECTT
T ss_pred HHHHHHHh-ccCCCEEEEeCCHHHHHHHHHHHHh-----------------------------------cCCcEEEeCCC
Confidence 11222222 3567899999999999998876632 24568999999
Q ss_pred CCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEE
Q 000114 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2158)
Q Consensus 1643 l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~i 1722 (2158)
|+..+|..+++.|++|+++|||||+++++|+|+|++.+|| .|+.........+..+|+||+|||||.| ..|.|+
T Consensus 277 ~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi----~~~~p~~~~~~~s~~~~~Qr~GR~gR~g--~~g~~~ 350 (395)
T 3pey_A 277 LQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVV----NYDLPTLANGQADPATYIHRIGRTGRFG--RKGVAI 350 (395)
T ss_dssp SCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEE----ESSCCBCTTSSBCHHHHHHHHTTSSCTT--CCEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEE----EcCCCCCCcCCCCHHHhhHhccccccCC--CCceEE
Confidence 9999999999999999999999999999999999999999 2332222223348999999999999987 689999
Q ss_pred EEecCChHHHH
Q 000114 1723 ILCHAPRKEYY 1733 (2158)
Q Consensus 1723 il~~~~~~~~~ 1733 (2158)
+++...+...+
T Consensus 351 ~~~~~~~~~~~ 361 (395)
T 3pey_A 351 SFVHDKNSFNI 361 (395)
T ss_dssp EEECSHHHHHH
T ss_pred EEEechHHHHH
Confidence 99987654433
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-37 Score=408.15 Aligned_cols=364 Identities=17% Similarity=0.241 Sum_probs=263.4
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcC-CCcEEEEccCCchhHHHHHHHHHHHHHhhc--CCCceEEEEEcccHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKAS--ETGVMRAVYIAPLEAL 1402 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~-~~nvli~ApTGSGKTl~a~l~il~~l~~~~--~~~~~~~v~IaP~raL 1402 (2158)
|.....+.+.. ||..|+|+|.++++.++.+ +.+++++||||||||++|++|++..+.... ...++++|||+||++|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 55566666655 7999999999999999953 567999999999999999999999887642 1223589999999999
Q ss_pred HHHHHHHHHHHhcC---CCCcEEEEEcCCcchhh--hcc--cCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccc
Q 000114 1403 AKERYRDWEIKFGQ---GLGMRVVELTGETAMDL--KLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHL 1475 (2158)
Q Consensus 1403 a~q~~~~~~~~f~~---~~g~~v~~ltG~~~~~~--~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~ 1475 (2158)
+.|+++.+++.+.. .....+..+.|+..... ..+ ..++|+|+||+++..++.+.. ...++++++|||||||+
T Consensus 108 a~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~-~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 108 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYS-NKFFRFVDYKVLDEADR 186 (579)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHH-HHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcc-ccccccCCEEEEEChHH
Confidence 99999999964421 12456777777765432 222 257999999999988877642 33578899999999999
Q ss_pred ccCCC-CChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HHHHHHhccCCCceEe-cCCCCcc---cccEEEEecccc
Q 000114 1476 IGGQG-GPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFN-FPPGVRP---VPLEIHIQGVDI 1549 (2158)
Q Consensus 1476 l~~~~-g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~dl~~wl~~~~~~i~~-f~~~~rp---v~l~~~i~~~~~ 1549 (2158)
+.+++ ++.++.++..+.......+...+++++|||+++. ..+..++......++. ......+ ..+...... .
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~ 264 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVI--S 264 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEE--E
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEE--e
Confidence 98763 5666667766665544445578999999999873 5555555443322221 1111111 111111111 1
Q ss_pred cchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHH
Q 000114 1550 TNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLK 1629 (2158)
Q Consensus 1550 ~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~ 1629 (2158)
.................+... .++.++||||+|++.|+.++..|.....
T Consensus 265 ~~~~~~~~~~~~~l~~~~~~~-~~~~~~iVF~~t~~~~~~l~~~L~~~~~------------------------------ 313 (579)
T 3sqw_A 265 EKFANSIFAAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFK------------------------------ 313 (579)
T ss_dssp SSTTHHHHHHHHHHHHHHHHT-TTCCEEEEECSSHHHHHHHHHHHHHHHT------------------------------
T ss_pred cchhhhHHHHHHHHHHHHhhc-CCCCcEEEECCcHHHHHHHHHHHHHhhc------------------------------
Confidence 111112111111222222222 4577899999999999999976643110
Q ss_pred HHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhcc
Q 000114 1630 ATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGH 1709 (2158)
Q Consensus 1630 ~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GR 1709 (2158)
.+..+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++.+|| ++..|.++.+|+||+||
T Consensus 314 --~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI----------~~~~p~s~~~y~Qr~GR 381 (579)
T 3sqw_A 314 --KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVL----------QIGVPSELANYIHRIGR 381 (579)
T ss_dssp --TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEE----------EESCCSSTTHHHHHHTT
T ss_pred --CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEE----------EcCCCCCHHHhhhhccc
Confidence 145689999999999999999999999999999999999999999999999 56677889999999999
Q ss_pred CCCCCCCCceEEEEEecCChHHHHHHHhh
Q 000114 1710 ASRPLLDNSGKCVILCHAPRKEYYKKFLY 1738 (2158)
Q Consensus 1710 aGR~g~d~~G~~iil~~~~~~~~~~k~l~ 1738 (2158)
|||.| ..|.|++++...+..+++.+..
T Consensus 382 agR~g--~~g~~i~~~~~~e~~~~~~l~~ 408 (579)
T 3sqw_A 382 TARSG--KEGSSVLFICKDELPFVRELED 408 (579)
T ss_dssp SSCTT--CCEEEEEEEEGGGHHHHHHHHH
T ss_pred cccCC--CCceEEEEEcccHHHHHHHHHH
Confidence 99987 6899999999988777776643
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=390.90 Aligned_cols=344 Identities=16% Similarity=0.210 Sum_probs=247.0
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCC----------------C
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASET----------------G 1389 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~----------------~ 1389 (2158)
|.....+.+.. ||..|+|+|.++++.++.+ ++++++||||||||++|++|++..+...... .
T Consensus 22 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (417)
T 2i4i_A 22 MGEIIMGNIELTRYTRPTPVQKHAIPIIKEK-RDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQ 100 (417)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSB
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHccC-CCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccC
Confidence 45556666655 7999999999999999875 5599999999999999999999887653211 1
Q ss_pred ceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhcccccccee
Q 000114 1390 VMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVS 1466 (2158)
Q Consensus 1390 ~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~ 1466 (2158)
.+++||++|+++|+.|+++.+++ +....++++..++|+..... .....++|+|+||+++..++... ...+.+++
T Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~--~~~~~~~~ 177 (417)
T 2i4i_A 101 YPISLVLAPTRELAVQIYEEARK-FSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERG--KIGLDFCK 177 (417)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHH-HHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT--SBCCTTCC
T ss_pred CccEEEECCcHHHHHHHHHHHHH-HhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcC--CcChhhCc
Confidence 24799999999999999999984 55556888999999876542 22345799999999998877653 34578899
Q ss_pred EEEecccccccCCCCChHHHHHHHHHHHHhh--cC--CCceEEEeccCCCCh-HHHH-HHhccCCCceEecCCCCccccc
Q 000114 1467 LFIIDELHLIGGQGGPVLEVIVSRMRYIASQ--VE--NKIRIVALSTSLANA-KDLG-EWIGATSHGLFNFPPGVRPVPL 1540 (2158)
Q Consensus 1467 llIiDEaH~l~~~~g~~~e~~isrl~~i~~~--~~--~~~riV~lSATl~n~-~dl~-~wl~~~~~~i~~f~~~~rpv~l 1540 (2158)
++|+||||++.+.. +... +..+... .+ ...+++++|||+++. ..+. .|++.. ..+........+..+
T Consensus 178 ~iViDEah~~~~~~---~~~~---~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i 250 (417)
T 2i4i_A 178 YLVLDEADRMLDMG---FEPQ---IRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEY-IFLAVGRVGSTSENI 250 (417)
T ss_dssp EEEESSHHHHHHTT---CHHH---HHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSC-EEEEEC----CCSSE
T ss_pred EEEEEChhHhhccC---cHHH---HHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCC-EEEEeCCCCCCccCc
Confidence 99999999987643 2222 2233221 12 267899999999763 3333 344322 111111111112222
Q ss_pred EEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhH
Q 000114 1541 EIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFI 1620 (2158)
Q Consensus 1541 ~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~ 1620 (2158)
...+......... .....+......++++||||++++.|+.++..|..
T Consensus 251 ~~~~~~~~~~~~~--------~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~------------------------ 298 (417)
T 2i4i_A 251 TQKVVWVEESDKR--------SFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYH------------------------ 298 (417)
T ss_dssp EEEEEECCGGGHH--------HHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHH------------------------
T ss_pred eEEEEEeccHhHH--------HHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHH------------------------
Confidence 2222222211111 11222233324577899999999999998866632
Q ss_pred hhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCH
Q 000114 1621 DNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPV 1700 (2158)
Q Consensus 1621 ~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~ 1700 (2158)
.+..+..+||+|+.++|..+++.|++|+.+|||||+++++|+|+|++.+|| ++..|.+.
T Consensus 299 -----------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi----------~~~~p~s~ 357 (417)
T 2i4i_A 299 -----------EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI----------NFDLPSDI 357 (417)
T ss_dssp -----------TTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEE----------ESSCCSSH
T ss_pred -----------CCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEE----------EEcCCCCH
Confidence 245689999999999999999999999999999999999999999999999 56677899
Q ss_pred HHHHHhhccCCCCCCCCceEEEEEecCChHHHHHHH
Q 000114 1701 TDLLQMMGHASRPLLDNSGKCVILCHAPRKEYYKKF 1736 (2158)
Q Consensus 1701 ~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~ 1736 (2158)
.+|+||+|||||.| ..|.|++++...+...++++
T Consensus 358 ~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~~~~l 391 (417)
T 2i4i_A 358 EEYVHRIGRTGRVG--NLGLATSFFNERNINITKDL 391 (417)
T ss_dssp HHHHHHHTTBCC----CCEEEEEEECGGGGGGHHHH
T ss_pred HHHHHhcCccccCC--CCceEEEEEccccHHHHHHH
Confidence 99999999999987 67999999988765554443
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-37 Score=384.25 Aligned_cols=335 Identities=21% Similarity=0.355 Sum_probs=253.5
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++.+...+ .||.+|+|+|.++++.++.++.+++++||||||||++|+++++..+... .+.++||++|+
T Consensus 13 l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~---------~~~~~lil~P~ 83 (367)
T 1hv8_A 13 LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN---------NGIEAIILTPT 83 (367)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS---------SSCCEEEECSC
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc---------CCCcEEEEcCC
Confidence 567777766 6899999999999999999877899999999999999999999876532 34589999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHh--hhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d 637 (2158)
++|+.|+++.+.+.+...++++..++|+...... ....++|+|+||+++....... ...+.++++||+||||.+.+
T Consensus 84 ~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~--~~~~~~~~~iIiDEah~~~~ 161 (367)
T 1hv8_A 84 RELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRG--TLNLKNVKYFILDEADEMLN 161 (367)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTT--CSCTTSCCEEEEETHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcC--CcccccCCEEEEeCchHhhh
Confidence 9999999999999988888899999998765442 2457899999999974433332 13467899999999999876
Q ss_pred -CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHH
Q 000114 638 -NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRF 716 (2158)
Q Consensus 638 -~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~ 716 (2158)
.+...+..++ .......+++++|||+++ .+..++........+.. ...+..+...+...... .+.
T Consensus 162 ~~~~~~~~~~~-------~~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~ 227 (367)
T 1hv8_A 162 MGFIKDVEKIL-------NACNKDKRILLFSATMPR--EILNLAKKYMGDYSFIK--AKINANIEQSYVEVNEN---ERF 227 (367)
T ss_dssp TTTHHHHHHHH-------HTSCSSCEEEEECSSCCH--HHHHHHHHHCCSEEEEE--CCSSSSSEEEEEECCGG---GHH
T ss_pred hchHHHHHHHH-------HhCCCCceEEEEeeccCH--HHHHHHHHHcCCCeEEE--ecCCCCceEEEEEeChH---HHH
Confidence 3433333332 234578899999999874 33333322211212211 11222344444433322 222
Q ss_pred HHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCC
Q 000114 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (2158)
Q Consensus 717 ~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~g 796 (2158)
..+... + . ..++++||||++++.+..++..|...+ .+
T Consensus 228 ~~l~~~----l-~-~~~~~~lvf~~~~~~~~~l~~~L~~~~-------------------------------------~~ 264 (367)
T 1hv8_A 228 EALCRL----L-K-NKEFYGLVFCKTKRDTKELASMLRDIG-------------------------------------FK 264 (367)
T ss_dssp HHHHHH----H-C-STTCCEEEECSSHHHHHHHHHHHHHTT-------------------------------------CC
T ss_pred HHHHHH----H-h-cCCCcEEEEECCHHHHHHHHHHHHhcC-------------------------------------CC
Confidence 222211 1 1 236789999999999999999887642 35
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCC
Q 000114 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (2158)
Q Consensus 797 v~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (2158)
+..+||+|+..+|..+++.|++|..+|||||+++++|+|+|++++||+ |+++. |..+|+||+|||||.|
T Consensus 265 ~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~----~~~~~------s~~~~~Q~~GR~~R~g- 333 (367)
T 1hv8_A 265 AGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVIN----YHLPQ------NPESYMHRIGRTGRAG- 333 (367)
T ss_dssp EEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEE----SSCCS------CHHHHHHHSTTTCCSS-
T ss_pred eEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEE----ecCCC------CHHHhhhcccccccCC-
Confidence 778899999999999999999999999999999999999999999999 66554 7889999999999987
Q ss_pred CCccEEEEEcCCCcHHHHHH
Q 000114 877 DSYGEGIIITGHSELRYYLS 896 (2158)
Q Consensus 877 d~~G~~iil~~~~~~~~y~~ 896 (2158)
..|.++++++..+...+..
T Consensus 334 -~~g~~~~~~~~~~~~~~~~ 352 (367)
T 1hv8_A 334 -KKGKAISIINRREYKKLRY 352 (367)
T ss_dssp -SCCEEEEEECTTSHHHHHH
T ss_pred -CccEEEEEEcHHHHHHHHH
Confidence 5699999999888766554
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-36 Score=382.45 Aligned_cols=343 Identities=20% Similarity=0.243 Sum_probs=255.9
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
.|+....+.++. ||..|+|+|.++++.+++++ +++++||||||||++|++|++..+.....+. +++|++|+++|+.
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~-~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~--~~lil~P~~~L~~ 103 (400)
T 1s2m_A 27 YLKRELLMGIFEAGFEKPSPIQEEAIPVAITGR-DILARAKNGTGKTAAFVIPTLEKVKPKLNKI--QALIMVPTRELAL 103 (400)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTC-CEEEECCTTSCHHHHHHHHHHHHCCTTSCSC--CEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCC-CEEEECCCCcHHHHHHHHHHHHHHhhccCCc--cEEEEcCCHHHHH
Confidence 456677778876 79999999999999999864 5999999999999999999998876532333 8999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCC
Q 000114 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g 1481 (2158)
|+++.+++ +....++++..++|+..... .....++|+|+||+++..++.+ ....+.+++++|+||||++.+..
T Consensus 104 q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~--~~~~~~~~~~vIiDEaH~~~~~~- 179 (400)
T 1s2m_A 104 QTSQVVRT-LGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR--KVADLSDCSLFIMDEADKMLSRD- 179 (400)
T ss_dssp HHHHHHHH-HTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEESHHHHSSHH-
T ss_pred HHHHHHHH-HhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHh--CCcccccCCEEEEeCchHhhhhc-
Confidence 99999994 55555888999999876542 2335679999999999877655 23457889999999999886532
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh--HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhc
Q 000114 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAM 1559 (2158)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~--~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~ 1559 (2158)
+...+..+...++...+++++|||++.. ..+..+++.. .............+............ .
T Consensus 180 -----~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~k---~--- 246 (400)
T 1s2m_A 180 -----FKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKP--YEINLMEELTLKGITQYYAFVEERQK---L--- 246 (400)
T ss_dssp -----HHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSC--EEESCCSSCBCTTEEEEEEECCGGGH---H---
T ss_pred -----hHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCC--eEEEeccccccCCceeEEEEechhhH---H---
Confidence 2333444555566789999999999752 2233333322 11222222222223322222211111 1
Q ss_pred ChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEe
Q 000114 1560 TKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYL 1639 (2158)
Q Consensus 1560 ~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~ 1639 (2158)
.....+... ...+++||||++++.++.++..|.. .+.++..+
T Consensus 247 --~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~ 288 (400)
T 1s2m_A 247 --HCLNTLFSK-LQINQAIIFCNSTNRVELLAKKITD-----------------------------------LGYSCYYS 288 (400)
T ss_dssp --HHHHHHHHH-SCCSEEEEECSSHHHHHHHHHHHHH-----------------------------------HTCCEEEE
T ss_pred --HHHHHHHhh-cCCCcEEEEEecHHHHHHHHHHHHh-----------------------------------cCCCeEEe
Confidence 112222233 4567899999999999998866632 35678999
Q ss_pred cCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCce
Q 000114 1640 HEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSG 1719 (2158)
Q Consensus 1640 H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G 1719 (2158)
||+|+..+|..+++.|++|+++|||||+++++|+|+|++.+|| ++..|.+..+|+||+|||||.| ..|
T Consensus 289 ~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi----------~~~~p~s~~~~~Qr~GR~gR~g--~~g 356 (400)
T 1s2m_A 289 HARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVI----------NFDFPKTAETYLHRIGRSGRFG--HLG 356 (400)
T ss_dssp CTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEE----------ESSCCSSHHHHHHHHCBSSCTT--CCE
T ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEE----------EeCCCCCHHHHHHhcchhcCCC--CCc
Confidence 9999999999999999999999999999999999999999999 4566778999999999999987 689
Q ss_pred EEEEEecCChHHHHHHHhh
Q 000114 1720 KCVILCHAPRKEYYKKFLY 1738 (2158)
Q Consensus 1720 ~~iil~~~~~~~~~~k~l~ 1738 (2158)
.|++++...+...++++..
T Consensus 357 ~~~~l~~~~~~~~~~~i~~ 375 (400)
T 1s2m_A 357 LAINLINWNDRFNLYKIEQ 375 (400)
T ss_dssp EEEEEECGGGHHHHHHHHH
T ss_pred eEEEEeccchHHHHHHHHH
Confidence 9999999887766665543
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-37 Score=403.92 Aligned_cols=336 Identities=18% Similarity=0.251 Sum_probs=249.8
Q ss_pred ChhhHhhc---CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 483 PEWAQPAF---KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 483 p~~~~~~f---~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
++.+...+ .||.+|+|+|.++++.++.+++ ++++||||+|||++|++|++.. ..++|||+|+
T Consensus 29 ~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d-~lv~~pTGsGKTl~~~lpal~~--------------~g~~lVisP~ 93 (591)
T 2v1x_A 29 SGKVKDILQNVFKLEKFRPLQLETINVTMAGKE-VFLVMPTGGGKSLCYQLPALCS--------------DGFTLVICPL 93 (591)
T ss_dssp HHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCC-EEEECCTTSCTTHHHHHHHHTS--------------SSEEEEECSC
T ss_pred CHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCC-EEEEECCCChHHHHHHHHHHHc--------------CCcEEEEeCH
Confidence 34444444 4899999999999999998755 9999999999999999999752 1289999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---------hccccEEEcchhHHH---HHHhccCCCccccccceE
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---------IEETQIIVTTPEKWD---IITRKSGDRTYTQLVKLL 627 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---------~~~~~IiV~TPekld---~l~r~~~~~~~l~~v~lI 627 (2158)
++|+.|+++.+.+. |+++..++|+....... ...++|+|+|||++. .+.........+.++++|
T Consensus 94 ~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~i 169 (591)
T 2v1x_A 94 ISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRI 169 (591)
T ss_dssp HHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEE
Confidence 99999999999885 78899999987654331 347899999999862 222222112345678999
Q ss_pred Eeeccccccc---CChhhHHHHHHHHHHHHhhccccccEEEEccccCCh--HHHHHHHhccccCceEEecCCccccccee
Q 000114 628 IIDEIHLLHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFDNSYRPVPLSQ 702 (2158)
Q Consensus 628 IiDEaH~l~d---~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~--~dv~~~l~~~~~~~~~~f~~~~rpv~l~~ 702 (2158)
||||||++.+ .+.+.+..+ ..+ ....+.+++++||||+++. .++..+++.. ....+...+....+..
T Consensus 170 ViDEAH~is~~g~dfr~~~~~l-~~l----~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~---~~~~~~~~~~r~nl~~ 241 (591)
T 2v1x_A 170 AVDEVHCCSQWGHDFRPDYKAL-GIL----KRQFPNASLIGLTATATNHVLTDAQKILCIE---KCFTFTASFNRPNLYY 241 (591)
T ss_dssp EEETGGGGSTTCTTCCGGGGGG-GHH----HHHCTTSEEEEEESSCCHHHHHHHHHHTTCC---SCEEEECCCCCTTEEE
T ss_pred EEECcccccccccccHHHHHHH-HHH----HHhCCCCcEEEEecCCCHHHHHHHHHHhCCC---CcEEEecCCCCcccEE
Confidence 9999999875 245555432 111 1234578999999998853 5666777643 2233444444434433
Q ss_pred EEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhh
Q 000114 703 QYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTD 782 (2158)
Q Consensus 703 ~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 782 (2158)
.+.... ........ .+.+.+.....++++||||+|++.++.++..|...+
T Consensus 242 ~v~~~~-~~~~~~~~----~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g------------------------- 291 (591)
T 2v1x_A 242 EVRQKP-SNTEDFIE----DIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLG------------------------- 291 (591)
T ss_dssp EEEECC-SSHHHHHH----HHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTT-------------------------
T ss_pred EEEeCC-CcHHHHHH----HHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCC-------------------------
Confidence 332211 11111111 222223223346799999999999999999997643
Q ss_pred ccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHH
Q 000114 783 MVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPL 862 (2158)
Q Consensus 783 ~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~ 862 (2158)
.++..+||+|+..+|..+++.|++|.++|||||+++++|||+|++++||+ |+++. |+.
T Consensus 292 ------------~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~----~~~p~------s~~ 349 (591)
T 2v1x_A 292 ------------IHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIH----HSMSK------SME 349 (591)
T ss_dssp ------------CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEE----SSCCS------SHH
T ss_pred ------------CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEE----eCCCC------CHH
Confidence 34778899999999999999999999999999999999999999999999 77775 889
Q ss_pred HHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHhhc
Q 000114 863 DIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMN 899 (2158)
Q Consensus 863 ~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~ 899 (2158)
+|+||+|||||.| ..|.|+++++..+...+..++.
T Consensus 350 ~y~Qr~GRaGR~G--~~g~~i~l~~~~D~~~~~~~~~ 384 (591)
T 2v1x_A 350 NYYQESGRAGRDD--MKADCILYYGFGDIFRISSMVV 384 (591)
T ss_dssp HHHHHHTTSCTTS--SCEEEEEEECHHHHHHHHHHTT
T ss_pred HHHHHhccCCcCC--CCceEEEEEChHHHHHHHHHHh
Confidence 9999999999987 6799999999888777766654
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=399.31 Aligned_cols=333 Identities=18% Similarity=0.259 Sum_probs=250.4
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHH
Q 000114 1332 YEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2158)
Q Consensus 1332 ~~~l~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~ 1411 (2158)
+...| ||..|+|+|.++++.++.+++ +++.+|||+|||+||++|++. ..+ ++|||+|+++|+.|+++.++
T Consensus 36 L~~~f-g~~~~rp~Q~~~i~~il~g~d-~lv~~pTGsGKTl~~~lpal~------~~g--~~lVisP~~~L~~q~~~~l~ 105 (591)
T 2v1x_A 36 LQNVF-KLEKFRPLQLETINVTMAGKE-VFLVMPTGGGKSLCYQLPALC------SDG--FTLVICPLISLMEDQLMVLK 105 (591)
T ss_dssp HHHTS-CCCSCCTTHHHHHHHHHTTCC-EEEECCTTSCTTHHHHHHHHT------SSS--EEEEECSCHHHHHHHHHHHH
T ss_pred HHHHh-CCCCCCHHHHHHHHHHHcCCC-EEEEECCCChHHHHHHHHHHH------cCC--cEEEEeCHHHHHHHHHHHHH
Confidence 33433 599999999999999998654 999999999999999999983 244 89999999999999999998
Q ss_pred HHhcCCCCcEEEEEcCCcchhhh---------cccCCcEEEeCHHHHH---HHHhhhhccccccceeEEEecccccccCC
Q 000114 1412 IKFGQGLGMRVVELTGETAMDLK---------LLEKGQIIISTPEKWD---ALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2158)
Q Consensus 1412 ~~f~~~~g~~v~~ltG~~~~~~~---------~l~~~~IIV~TPe~l~---~l~r~~~~~~~l~~v~llIiDEaH~l~~~ 1479 (2158)
+ + |+++..++|+...... .....+|+|+|||++. .+...+.....+.++++|||||||++.++
T Consensus 106 ~-~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~ 180 (591)
T 2v1x_A 106 Q-L----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQW 180 (591)
T ss_dssp H-H----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTT
T ss_pred h-c----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECccccccc
Confidence 4 4 6788999998765422 1245699999999884 34443333345678999999999999754
Q ss_pred CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh--HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHH
Q 000114 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQ 1557 (2158)
Q Consensus 1480 ~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~--~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~ 1557 (2158)
|+.+...+..+..+... .++.++++||||+++. .++..|++......+. .......+...+...... ..
T Consensus 181 -g~dfr~~~~~l~~l~~~-~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~--~~~~r~nl~~~v~~~~~~-~~---- 251 (591)
T 2v1x_A 181 -GHDFRPDYKALGILKRQ-FPNASLIGLTATATNHVLTDAQKILCIEKCFTFT--ASFNRPNLYYEVRQKPSN-TE---- 251 (591)
T ss_dssp -CTTCCGGGGGGGHHHHH-CTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEE--CCCCCTTEEEEEEECCSS-HH----
T ss_pred -ccccHHHHHHHHHHHHh-CCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEe--cCCCCcccEEEEEeCCCc-HH----
Confidence 33333333333333333 3478999999999873 6788888876543333 222222333333322111 11
Q ss_pred hcChHHHHHHHHhH---hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcc
Q 000114 1558 AMTKPTFTAIVQHA---KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRH 1634 (2158)
Q Consensus 1558 ~~~k~~~~~i~~~~---~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~ 1634 (2158)
.....+...+ .+++++||||+|++.|+.++..|.. .+.
T Consensus 252 ----~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~-----------------------------------~g~ 292 (591)
T 2v1x_A 252 ----DFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQN-----------------------------------LGI 292 (591)
T ss_dssp ----HHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHH-----------------------------------TTC
T ss_pred ----HHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHH-----------------------------------CCC
Confidence 1122222222 3567899999999999999976632 245
Q ss_pred cEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCC
Q 000114 1635 GVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714 (2158)
Q Consensus 1635 gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g 1714 (2158)
++..|||+|+..+|..+++.|.+|+++|||||+++++|||+|++++|| |+..|.++.+|+||+|||||.|
T Consensus 293 ~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI----------~~~~p~s~~~y~Qr~GRaGR~G 362 (591)
T 2v1x_A 293 HAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVI----------HHSMSKSMENYYQESGRAGRDD 362 (591)
T ss_dssp CEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEE----------ESSCCSSHHHHHHHHTTSCTTS
T ss_pred CEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEE----------EeCCCCCHHHHHHHhccCCcCC
Confidence 689999999999999999999999999999999999999999999999 7778889999999999999987
Q ss_pred CCCceEEEEEecCChHHHHHHHhhC
Q 000114 1715 LDNSGKCVILCHAPRKEYYKKFLYD 1739 (2158)
Q Consensus 1715 ~d~~G~~iil~~~~~~~~~~k~l~~ 1739 (2158)
..|.|++++...+...+..++..
T Consensus 363 --~~g~~i~l~~~~D~~~~~~~~~~ 385 (591)
T 2v1x_A 363 --MKADCILYYGFGDIFRISSMVVM 385 (591)
T ss_dssp --SCEEEEEEECHHHHHHHHHHTTT
T ss_pred --CCceEEEEEChHHHHHHHHHHhh
Confidence 68999999988777777777654
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=389.77 Aligned_cols=348 Identities=16% Similarity=0.268 Sum_probs=241.4
Q ss_pred CcccccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccH
Q 000114 1322 LPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLE 1400 (2158)
Q Consensus 1322 ~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~r 1400 (2158)
+....+.....+.+.. ||..|+|+|.++++.++.+. +++++||||||||++|++++++.+.....++ +++|++|++
T Consensus 42 f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~-~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~--~~lil~P~~ 118 (414)
T 3eiq_A 42 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGY-DVIAQAQSGTGKTATFAISILQQIELDLKAT--QALVLAPTR 118 (414)
T ss_dssp GGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTC-CEEECCCSCSSSHHHHHHHHHHHCCTTSCSC--CEEEECSSH
T ss_pred HhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCC-CEEEECCCCCcccHHHHHHHHHHHhhcCCce--eEEEEeChH
Confidence 3334566666777765 79999999999999999855 4999999999999999999998886632333 899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh--c--ccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccc
Q 000114 1401 ALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK--L--LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476 (2158)
Q Consensus 1401 aLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~--~--l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l 1476 (2158)
+|+.|+++.+++ ++...+..+..+.|+...... . ...++|+|+||+++..++.+ ....+.++++||+||||++
T Consensus 119 ~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~~~~vViDEah~~ 195 (414)
T 3eiq_A 119 ELAQQIQKVVMA-LGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR--RYLSPKYIKMFVLDEADEM 195 (414)
T ss_dssp HHHHHHHHHHHH-HGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH--TSSCSTTCCEEEECSHHHH
T ss_pred HHHHHHHHHHHH-HhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcccccCcEEEEECHHHh
Confidence 999999999994 555567888888887665422 1 24569999999998877655 2345678999999999988
Q ss_pred cCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHH
Q 000114 1477 GGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEAR 1555 (2158)
Q Consensus 1477 ~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~ 1555 (2158)
.+.. +...+..+...++.+.+++++|||+++. ..+...+......+........+..+............ .
T Consensus 196 ~~~~------~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 267 (414)
T 3eiq_A 196 LSRG------FKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEW--K 267 (414)
T ss_dssp HHTT------THHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTT--H
T ss_pred hccC------cHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHh--H
Confidence 6543 2344445556667789999999998752 23333222222111111111122222222222211111 0
Q ss_pred HHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhccc
Q 000114 1556 MQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHG 1635 (2158)
Q Consensus 1556 ~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~g 1635 (2158)
...+..+... ...+++||||++++.|..++..|.. .+.+
T Consensus 268 -----~~~l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~-----------------------------------~~~~ 306 (414)
T 3eiq_A 268 -----LDTLCDLYET-LTITQAVIFINTRRKVDWLTEKMHA-----------------------------------RDFT 306 (414)
T ss_dssp -----HHHHHHHHHS-SCCSSCEEECSCHHHHHHHHHHHHT-----------------------------------TTCC
T ss_pred -----HHHHHHHHHh-CCCCcEEEEeCCHHHHHHHHHHHHh-----------------------------------cCCe
Confidence 0112222333 3567899999999999999876632 2456
Q ss_pred EEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCC
Q 000114 1636 VGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLL 1715 (2158)
Q Consensus 1636 v~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~ 1715 (2158)
+..+||+|+..+|..+++.|++|..+|||||+++++|+|+|++.+|| ++..|.+..+|+||+|||||.|
T Consensus 307 ~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi----------~~~~p~s~~~~~Qr~GR~gR~g- 375 (414)
T 3eiq_A 307 VSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI----------NYDLPTNRENYIHRIGRGGRFG- 375 (414)
T ss_dssp CEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEE----------ESSCCSSTHHHHHHSCCC-----
T ss_pred EEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEE----------EeCCCCCHHHhhhhcCcccCCC-
Confidence 89999999999999999999999999999999999999999999999 5566778999999999999987
Q ss_pred CCceEEEEEecCChHHHHHHH
Q 000114 1716 DNSGKCVILCHAPRKEYYKKF 1736 (2158)
Q Consensus 1716 d~~G~~iil~~~~~~~~~~k~ 1736 (2158)
..|.|++++...+...++++
T Consensus 376 -~~g~~~~~~~~~~~~~~~~~ 395 (414)
T 3eiq_A 376 -RKGVAINMVTEEDKRTLRDI 395 (414)
T ss_dssp ----CEEEEECSTHHHHHHHH
T ss_pred -CCceEEEEEcHHHHHHHHHH
Confidence 67999999998877666554
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-36 Score=372.56 Aligned_cols=324 Identities=21% Similarity=0.311 Sum_probs=242.6
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
||+++.+.+ .||.+|+|+|.++++.++.+ ++++++||||+|||++|++++++. +.++||++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~-~~~lv~~~TGsGKT~~~~~~~~~~--------------~~~~liv~P~ 65 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQG-KNVVVRAKTGSGKTAAYAIPILEL--------------GMKSLVVTPT 65 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHH--------------TCCEEEECSS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEEcCCCCcHHHHHHHHHHhh--------------cCCEEEEeCC
Confidence 456666666 68999999999999998876 469999999999999999998864 1279999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHh--hhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d 637 (2158)
++|+.|+++.+.+.+...++++..++|+...... ....++|+|+||+++..+.... ...+.++++||+||||++.+
T Consensus 66 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--~~~~~~~~~iViDEah~~~~ 143 (337)
T 2z0m_A 66 RELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKG--VIDLSSFEIVIIDEADLMFE 143 (337)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTT--SCCGGGCSEEEEESHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcC--CcchhhCcEEEEEChHHhhc
Confidence 9999999999999888888999999998765443 2456899999999984443332 23467899999999999876
Q ss_pred -CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHH
Q 000114 638 -NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRF 716 (2158)
Q Consensus 638 -~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~ 716 (2158)
.+...+..++. ..+...+++++|||+++ .+..++........ .......+..+...++.+..... ..
T Consensus 144 ~~~~~~~~~~~~-------~~~~~~~~~~~SAT~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~- 211 (337)
T 2z0m_A 144 MGFIDDIKIILA-------QTSNRKITGLFSATIPE--EIRKVVKDFITNYE-EIEACIGLANVEHKFVHVKDDWR-SK- 211 (337)
T ss_dssp TTCHHHHHHHHH-------HCTTCSEEEEEESCCCH--HHHHHHHHHSCSCE-EEECSGGGGGEEEEEEECSSSSH-HH-
T ss_pred cccHHHHHHHHh-------hCCcccEEEEEeCcCCH--HHHHHHHHhcCCce-eeecccccCCceEEEEEeChHHH-HH-
Confidence 45555544433 24567888999999884 33333332211211 12222333344444444333221 11
Q ss_pred HHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCC
Q 000114 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (2158)
Q Consensus 717 ~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~g 796 (2158)
.. ......++++||||++++.++.++..|. .
T Consensus 212 -------~~-~~~~~~~~~~lvf~~~~~~~~~l~~~l~-----------------------------------------~ 242 (337)
T 2z0m_A 212 -------VQ-ALRENKDKGVIVFVRTRNRVAKLVRLFD-----------------------------------------N 242 (337)
T ss_dssp -------HH-HHHTCCCSSEEEECSCHHHHHHHHTTCT-----------------------------------------T
T ss_pred -------HH-HHHhCCCCcEEEEEcCHHHHHHHHHHhh-----------------------------------------h
Confidence 11 1223447899999999999988776442 2
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCC
Q 000114 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY 876 (2158)
Q Consensus 797 v~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~ 876 (2158)
+..+||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. |+.+|+||+|||||.|
T Consensus 243 ~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~----~~~~~------s~~~~~Q~~GR~gR~g- 311 (337)
T 2z0m_A 243 AIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVIN----FDAPQ------DLRTYIHRIGRTGRMG- 311 (337)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEE----SSCCS------SHHHHHHHHTTBCGGG-
T ss_pred hhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEE----ecCCC------CHHHhhHhcCccccCC-
Confidence 567899999999999999999999999999999999999999999998 66664 7889999999999987
Q ss_pred CCccEEEEEcCCCcHHHHHH
Q 000114 877 DSYGEGIIITGHSELRYYLS 896 (2158)
Q Consensus 877 d~~G~~iil~~~~~~~~y~~ 896 (2158)
..|.+++++. .+.....+
T Consensus 312 -~~g~~~~~~~-~~~~~~~~ 329 (337)
T 2z0m_A 312 -RKGEAITFIL-NEYWLEKE 329 (337)
T ss_dssp -CCEEEEEEES-SCHHHHHH
T ss_pred -CCceEEEEEe-CcHHHHHH
Confidence 5699999988 66555444
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=376.52 Aligned_cols=337 Identities=16% Similarity=0.182 Sum_probs=248.9
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
|+....+.+.. ||..|+|+|.++++.++.+ .+++++||||+|||++|++|++..+.....+ .+++|++|+++|+.|
T Consensus 15 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~--~~~lil~P~~~L~~q 91 (391)
T 1xti_A 15 LKPELLRAIVDCGFEHPSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQ--VSVLVMCHTRELAFQ 91 (391)
T ss_dssp CCHHHHHHHHHHSCCSCCHHHHHHHHHHTTT-CCEEEECSSCSSHHHHHHHHHHHHCCCCTTC--CCEEEECSCHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcC-CcEEEECCCCCcHHHHHHHHHHHhhcccCCC--eeEEEECCCHHHHHH
Confidence 44455556655 7999999999999999885 5599999999999999999999887653223 389999999999999
Q ss_pred HHHHHHHHhcCC-CCcEEEEEcCCcchhh--hcc--cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCC
Q 000114 1406 RYRDWEIKFGQG-LGMRVVELTGETAMDL--KLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (2158)
Q Consensus 1406 ~~~~~~~~f~~~-~g~~v~~ltG~~~~~~--~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~ 1480 (2158)
+++.+++ +... .++++..++|+..... ..+ ..++|+|+||+++..+++.. ...+.+++++|+||||++.++.
T Consensus 92 ~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~--~~~~~~~~~vViDEaH~~~~~~ 168 (391)
T 1xti_A 92 ISKEYER-FSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK--SLNLKHIKHFILDECDKMLEQL 168 (391)
T ss_dssp HHHHHHH-HTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT--SSCCTTCSEEEECSHHHHTSSH
T ss_pred HHHHHHH-HHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcC--CccccccCEEEEeCHHHHhhcc
Confidence 9999984 4433 3789999999876432 222 23599999999998887663 3357899999999999987542
Q ss_pred CChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HH-HHHHhccCCCceEecCCCC--cccccEEEEecccccchHHHH
Q 000114 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KD-LGEWIGATSHGLFNFPPGV--RPVPLEIHIQGVDITNFEARM 1556 (2158)
Q Consensus 1481 g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~d-l~~wl~~~~~~i~~f~~~~--rpv~l~~~i~~~~~~~~~~~~ 1556 (2158)
.+...+..+....+...+++++|||+++. .. +..+++.. . .+...... ....+...+.........
T Consensus 169 -----~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 238 (391)
T 1xti_A 169 -----DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDP-M-EIFVDDETKLTLHGLQQYYVKLKDNEKN--- 238 (391)
T ss_dssp -----HHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSC-E-EEECCCCCCCCCTTCEEEEEECCGGGHH---
T ss_pred -----chHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCC-e-EEEecCccccCcccceEEEEEcCchhHH---
Confidence 13344445555566789999999999873 33 33444322 1 12222211 122233332222211111
Q ss_pred HhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccE
Q 000114 1557 QAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (2158)
Q Consensus 1557 ~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv 1636 (2158)
.....+... ..++++||||++++.|..++..|.. .+..+
T Consensus 239 -----~~l~~~l~~-~~~~~~lvf~~~~~~~~~l~~~L~~-----------------------------------~~~~~ 277 (391)
T 1xti_A 239 -----RKLFDLLDV-LEFNQVVIFVKSVQRCIALAQLLVE-----------------------------------QNFPA 277 (391)
T ss_dssp -----HHHHHHHHH-SCCSEEEEECSCHHHHHHHHHHHHH-----------------------------------TTCCE
T ss_pred -----HHHHHHHHh-cCCCcEEEEeCcHHHHHHHHHHHHh-----------------------------------CCCcE
Confidence 111222233 3678899999999999999876632 23458
Q ss_pred EEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCC
Q 000114 1637 GYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD 1716 (2158)
Q Consensus 1637 ~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d 1716 (2158)
..+||+|+..+|..+++.|++|+.+|||||+++++|+|+|++.+|| ++..|.+..+|+||+|||||.|
T Consensus 278 ~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi----------~~~~p~s~~~~~Qr~GR~~R~g-- 345 (391)
T 1xti_A 278 IAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF----------NYDMPEDSDTYLHRVARAGRFG-- 345 (391)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEE----------ESSCCSSHHHHHHHHCBCSSSC--
T ss_pred EEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEE----------EeCCCCCHHHHHHhcccccCCC--
Confidence 8999999999999999999999999999999999999999999998 5667789999999999999987
Q ss_pred CceEEEEEecCChHHH
Q 000114 1717 NSGKCVILCHAPRKEY 1732 (2158)
Q Consensus 1717 ~~G~~iil~~~~~~~~ 1732 (2158)
..|.|++++.+.+...
T Consensus 346 ~~g~~~~~~~~~~~~~ 361 (391)
T 1xti_A 346 TKGLAITFVSDENDAK 361 (391)
T ss_dssp CCCEEEEEECSHHHHH
T ss_pred CceEEEEEEcccchHH
Confidence 7899999998765433
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-37 Score=415.55 Aligned_cols=470 Identities=15% Similarity=0.168 Sum_probs=304.8
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
+++.+...+ .+ ..|+++|+++++.++.++++++++||||||||+. +|++-....... ..+.+++|++|+
T Consensus 79 l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~ll~~~~~~~------~~g~~ilvl~P~ 149 (773)
T 2xau_A 79 FTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQFVLFDEMPH------LENTQVACTQPR 149 (773)
T ss_dssp CCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH--HHHHHHHHHCGG------GGTCEEEEEESC
T ss_pred CCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHHHhcccc------CCCceEEecCch
Confidence 355555555 33 6789999999999999989999999999999993 444421111100 024579999999
Q ss_pred HHHHHHHHHHHHhhcc-cCCcEEEEEeCCCccCHhhhccccEEEcchhHHH-HHHhccCCCccccccceEEeeccccccc
Q 000114 560 KALVAEVVGNLSNRLQ-MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWD-IITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~-~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld-~l~r~~~~~~~l~~v~lIIiDEaH~l~d 637 (2158)
++|+.|+++++...++ ..+..++.-. .........++|+++||+.+. .+... ..+.++++|||||+|.
T Consensus 150 r~La~q~~~~l~~~~~~~v~~~vG~~i---~~~~~~~~~~~I~v~T~G~l~r~l~~~----~~l~~~~~lIlDEah~--- 219 (773)
T 2xau_A 150 RVAAMSVAQRVAEEMDVKLGEEVGYSI---RFENKTSNKTILKYMTDGMLLREAMED----HDLSRYSCIILDEAHE--- 219 (773)
T ss_dssp HHHHHHHHHHHHHHTTCCBTTTEEEEE---TTEEECCTTCSEEEEEHHHHHHHHHHS----TTCTTEEEEEECSGGG---
T ss_pred HHHHHHHHHHHHHHhCCchhheeccee---ccccccCCCCCEEEECHHHHHHHHhhC----ccccCCCEEEecCccc---
Confidence 9999999998876543 2222233211 111122347899999999873 33332 4578899999999994
Q ss_pred CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHH
Q 000114 638 NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQ 717 (2158)
Q Consensus 638 ~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~ 717 (2158)
|+...+.++..+.. +....+..++|++|||+ +.++++.|++.. .++.... +..|+.+.+........ ..
T Consensus 220 -R~ld~d~~~~~l~~-l~~~~~~~~iIl~SAT~-~~~~l~~~~~~~---~vi~v~g--r~~pv~~~~~~~~~~~~---~~ 288 (773)
T 2xau_A 220 -RTLATDILMGLLKQ-VVKRRPDLKIIIMSATL-DAEKFQRYFNDA---PLLAVPG--RTYPVELYYTPEFQRDY---LD 288 (773)
T ss_dssp -CCHHHHHHHHHHHH-HHHHCTTCEEEEEESCS-CCHHHHHHTTSC---CEEECCC--CCCCEEEECCSSCCSCH---HH
T ss_pred -cccchHHHHHHHHH-HHHhCCCceEEEEeccc-cHHHHHHHhcCC---CcccccC--cccceEEEEecCCchhH---HH
Confidence 22222222222211 22234578999999998 568888888632 3333333 34455554443322221 11
Q ss_pred HhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCe
Q 000114 718 LMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGF 797 (2158)
Q Consensus 718 ~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv 797 (2158)
.....+.. +.....++++||||+++++++.++..|....... .. ........+
T Consensus 289 ~~l~~l~~-~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l----------------~~----------~~~~~~~~v 341 (773)
T 2xau_A 289 SAIRTVLQ-IHATEEAGDILLFLTGEDEIEDAVRKISLEGDQL----------------VR----------EEGCGPLSV 341 (773)
T ss_dssp HHHHHHHH-HHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHH----------------HH----------HHCCCCEEE
T ss_pred HHHHHHHH-HHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhh----------------cc----------cccCCCeEE
Confidence 11112222 2223347899999999999999999987642110 00 000113458
Q ss_pred EEecCCCCHHHHHHHHHHHh-----CCCceEEEechhhhhccCCCceEEEEeccc----ccCCCCCcc----ccCCHHHH
Q 000114 798 AIHHAGMTRGDRQLVEDLFG-----DGHVQVLVSTATLAWGVNLPAHTVIIKGTQ----IYNPEKGAW----TELSPLDI 864 (2158)
Q Consensus 798 ~~hHagl~~~~R~~v~~~F~-----~g~i~VLVaT~tla~GVdlP~v~vVI~~~~----~yd~~~g~~----~~~s~~~~ 864 (2158)
..+||+|+..+|..+++.|+ +|.++|||||+++++|||+|++++||+++. .||+..|.. .++|..+|
T Consensus 342 ~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~ 421 (773)
T 2xau_A 342 YPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASA 421 (773)
T ss_dssp EEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHH
T ss_pred EEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHH
Confidence 89999999999999999999 999999999999999999999999999654 588877633 37899999
Q ss_pred HHhhcccCCCCCCCccEEEEEcCCCcHHHHHHhhcCCCcccchhhHhhHHHHHHHHHhccccChHHHHHHHHhhHHHHHh
Q 000114 865 MQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRM 944 (2158)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~~~pieS~l~~~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~ 944 (2158)
+||+|||||. ..|.||++++..+.. ..+.....| | -+...|...+..-...| +.+.
T Consensus 422 ~QR~GRaGR~---~~G~~~~l~~~~~~~--~~l~~~~~p-E-i~r~~L~~~~L~l~~~g-i~~~---------------- 477 (773)
T 2xau_A 422 QQRAGRAGRT---RPGKCFRLYTEEAFQ--KELIEQSYP-E-ILRSNLSSTVLELKKLG-IDDL---------------- 477 (773)
T ss_dssp HHHHHGGGSS---SSEEEEESSCHHHHH--HTSCSSCCC-G-GGGSCCHHHHHHHHHTT-CCCG----------------
T ss_pred HhhccccCCC---CCCEEEEEecHHHhc--ccccccCCC-c-cccCcHHHHHHHHHHcC-CCCh----------------
Confidence 9999999997 579999999765431 223222222 1 12222322222222222 1111
Q ss_pred hcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCC
Q 000114 945 LRNPALYGLAPEVLKEDITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTM 1024 (2158)
Q Consensus 945 ~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~ 1024 (2158)
..+. +.+.| ..+.+..|+..|...|+|+.+ | .+|++|+++|.||++|..++++..+....|
T Consensus 478 ----~~f~-----~~~~p-----~~~~i~~a~~~L~~lgald~~---~--~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c 538 (773)
T 2xau_A 478 ----VHFD-----FMDPP-----APETMMRALEELNYLACLDDE---G--NLTPLGRLASQFPLDPMLAVMLIGSFEFQC 538 (773)
T ss_dssp ----GGCC-----CSSCC-----CHHHHHHHHHHHHHTTSBCTT---S--CBCHHHHHHTTSSSCHHHHHHHHHGGGGTC
T ss_pred ----hhcc-----ccCCC-----cHHHHHHHHHHHHHcCCcccC---C--CcChhhhhhccccCCHHHHHHHHhhcccCc
Confidence 1010 01111 225688999999999999633 3 599999999999999999999998766555
Q ss_pred CHHHHHHHhhCCccCCCCcCChhHHHHHH
Q 000114 1025 GDIELCRLFSLSEEFKYVTVRQDEKMELA 1053 (2158)
Q Consensus 1025 ~~~~~l~~~s~~~ef~~i~~r~~e~~~l~ 1053 (2158)
..+++.|+|+.+ +.++.+|+.++.+..
T Consensus 539 -~~~~l~i~a~ls-~~~~f~~~~~~~~~~ 565 (773)
T 2xau_A 539 -SQEILTIVAMLS-VPNVFIRPTKDKKRA 565 (773)
T ss_dssp -HHHHHHHHHHHT-SCCCBCCCTTCHHHH
T ss_pred -hhHHHHHHHhcc-cCCcccCChHHHHHH
Confidence 356776666554 466777766554433
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=373.40 Aligned_cols=335 Identities=21% Similarity=0.334 Sum_probs=252.0
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
|.......+.. ||..|+|+|.++++.+++++.+++++||||||||++|.++++..+.. .++ .+++|++|+++|+.|
T Consensus 13 l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~-~~~--~~~lil~P~~~L~~q 89 (367)
T 1hv8_A 13 LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE-NNG--IEAIILTPTRELAIQ 89 (367)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS-SSS--CCEEEECSCHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc-cCC--CcEEEEcCCHHHHHH
Confidence 45555666655 79999999999999999987789999999999999999999987765 223 389999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcchh--hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCCh
Q 000114 1406 RYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2158)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~ltG~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~ 1483 (2158)
+++.+++.++. .++++..++|+.... ...+..++|+|+||+++...+.. ....+.+++++|+||||.+.+..
T Consensus 90 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--~~~~~~~~~~iIiDEah~~~~~~--- 163 (367)
T 1hv8_A 90 VADEIESLKGN-KNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINR--GTLNLKNVKYFILDEADEMLNMG--- 163 (367)
T ss_dssp HHHHHHHHHCS-SCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHT--TCSCTTSCCEEEEETHHHHHTTT---
T ss_pred HHHHHHHHhCC-CCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHc--CCcccccCCEEEEeCchHhhhhc---
Confidence 99999965543 477888888877643 33455789999999999877654 23457889999999999987644
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEeccCCCCh--HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcCh
Q 000114 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTK 1561 (2158)
Q Consensus 1484 ~e~~isrl~~i~~~~~~~~riV~lSATl~n~--~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k 1561 (2158)
+...+..+....+...+++++|||+++. ..+..+++... .... .....+...........
T Consensus 164 ---~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~---------- 225 (367)
T 1hv8_A 164 ---FIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYS--FIKA---KINANIEQSYVEVNENE---------- 225 (367)
T ss_dssp ---THHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEE--EEEC---CSSSSSEEEEEECCGGG----------
T ss_pred ---hHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCe--EEEe---cCCCCceEEEEEeChHH----------
Confidence 3344445555567789999999999763 23344444221 1111 11112232222222111
Q ss_pred HHHHHHHHhH-hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEec
Q 000114 1562 PTFTAIVQHA-KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2158)
Q Consensus 1562 ~~~~~i~~~~-~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H 1640 (2158)
....+...+ ..++++||||++++.+..++..|.. .+.++..+|
T Consensus 226 -~~~~l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~~ 269 (367)
T 1hv8_A 226 -RFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRD-----------------------------------IGFKAGAIH 269 (367)
T ss_dssp -HHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEEC
T ss_pred -HHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHh-----------------------------------cCCCeEEee
Confidence 111222221 4567899999999999998866632 245689999
Q ss_pred CCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceE
Q 000114 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2158)
Q Consensus 1641 ~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~ 1720 (2158)
|+++..+|..+++.|++|+.+|||||+++++|+|+|++.+|| ++..|.+..+|+||+|||||.| ..|.
T Consensus 270 ~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi----------~~~~~~s~~~~~Q~~GR~~R~g--~~g~ 337 (367)
T 1hv8_A 270 GDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVI----------NYHLPQNPESYMHRIGRTGRAG--KKGK 337 (367)
T ss_dssp SSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEE----------ESSCCSCHHHHHHHSTTTCCSS--SCCE
T ss_pred CCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEE----------EecCCCCHHHhhhcccccccCC--CccE
Confidence 999999999999999999999999999999999999999998 4566789999999999999987 6789
Q ss_pred EEEEecCChHHHHHHH
Q 000114 1721 CVILCHAPRKEYYKKF 1736 (2158)
Q Consensus 1721 ~iil~~~~~~~~~~k~ 1736 (2158)
|++++...+...+..+
T Consensus 338 ~~~~~~~~~~~~~~~i 353 (367)
T 1hv8_A 338 AISIINRREYKKLRYI 353 (367)
T ss_dssp EEEEECTTSHHHHHHH
T ss_pred EEEEEcHHHHHHHHHH
Confidence 9999988776555443
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=387.58 Aligned_cols=324 Identities=17% Similarity=0.264 Sum_probs=246.9
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
||..|+|+|.++++.+++++ +++++||||||||+||++|++. ..+ ++|||+|+++|+.|+++.+++ +
T Consensus 22 g~~~~r~~Q~~~i~~il~g~-d~lv~apTGsGKTl~~~lp~l~------~~g--~~lvi~P~~aL~~q~~~~l~~-~--- 88 (523)
T 1oyw_A 22 GYQQFRPGQEEIIDTVLSGR-DCLVVMPTGGGKSLCYQIPALL------LNG--LTVVVSPLISLMKDQVDQLQA-N--- 88 (523)
T ss_dssp CCSSCCTTHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHH------SSS--EEEEECSCHHHHHHHHHHHHH-T---
T ss_pred CCCCCCHHHHHHHHHHHcCC-CEEEECCCCcHHHHHHHHHHHH------hCC--CEEEECChHHHHHHHHHHHHH-c---
Confidence 59999999999999999865 5999999999999999999983 134 899999999999999999883 3
Q ss_pred CCcEEEEEcCCcchhhh-----c--ccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHH
Q 000114 1418 LGMRVVELTGETAMDLK-----L--LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSR 1490 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~~~-----~--l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isr 1490 (2158)
|+.+..++|+...... . ....+|+|+|||++... .+.......++++|||||||++.+ +|+.+...+.+
T Consensus 89 -gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~--~~~~~l~~~~~~~vViDEaH~i~~-~g~~fr~~~~~ 164 (523)
T 1oyw_A 89 -GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLD--NFLEHLAHWNPVLLAVDEAHCISQ-WGHDFRPEYAA 164 (523)
T ss_dssp -TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTST--THHHHHTTSCEEEEEESSGGGGCT-TSSCCCHHHHG
T ss_pred -CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCh--HHHHHHhhCCCCEEEEeCccccCc-CCCccHHHHHH
Confidence 6788888887664321 1 13469999999998421 111122347899999999999964 44554444445
Q ss_pred HHHHHhhcCCCceEEEeccCCCCh--HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHH
Q 000114 1491 MRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIV 1568 (2158)
Q Consensus 1491 l~~i~~~~~~~~riV~lSATl~n~--~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~ 1568 (2158)
+..+.... ++.+++++|||+++. .++..|++.....++. .+..+| .+...+... .... ......+.
T Consensus 165 l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~-~l~~~v~~~--~~~~-------~~l~~~l~ 232 (523)
T 1oyw_A 165 LGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFDRP-NIRYMLMEK--FKPL-------DQLMRYVQ 232 (523)
T ss_dssp GGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE-CCCCCT-TEEEEEEEC--SSHH-------HHHHHHHH
T ss_pred HHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe-CCCCCC-ceEEEEEeC--CCHH-------HHHHHHHH
Confidence 54444443 368999999999874 6788999876544443 223333 233332211 1110 11122222
Q ss_pred HhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHH
Q 000114 1569 QHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQ 1648 (2158)
Q Consensus 1569 ~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR 1648 (2158)
. .+++++||||+|++.|+.++..|.. .+..+..|||+|+.++|
T Consensus 233 ~--~~~~~~IVf~~sr~~~e~l~~~L~~-----------------------------------~g~~~~~~h~~l~~~~R 275 (523)
T 1oyw_A 233 E--QRGKSGIIYCNSRAKVEDTAARLQS-----------------------------------KGISAAAYHAGLENNVR 275 (523)
T ss_dssp H--TTTCCEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTTSCHHHH
T ss_pred h--cCCCcEEEEeCCHHHHHHHHHHHHH-----------------------------------CCCCEEEecCCCCHHHH
Confidence 2 3667999999999999999976632 24568999999999999
Q ss_pred HHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC
Q 000114 1649 EVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1649 ~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~ 1728 (2158)
..+++.|++|+++|||||+++++|||+|++++|| |+..|.++.+|+||+|||||.| ..|.|++++...
T Consensus 276 ~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI----------~~~~p~s~~~y~Qr~GRaGR~g--~~~~~~l~~~~~ 343 (523)
T 1oyw_A 276 ADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV----------HFDIPRNIESYYQETGRAGRDG--LPAEAMLFYDPA 343 (523)
T ss_dssp HHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEE----------ESSCCSSHHHHHHHHTTSCTTS--SCEEEEEEECHH
T ss_pred HHHHHHHHcCCCeEEEEechhhCCCCccCccEEE----------EECCCCCHHHHHHHhccccCCC--CCceEEEEeCHH
Confidence 9999999999999999999999999999999999 6778889999999999999987 689999999888
Q ss_pred hHHHHHHHhhC
Q 000114 1729 RKEYYKKFLYD 1739 (2158)
Q Consensus 1729 ~~~~~~k~l~~ 1739 (2158)
+...++.++.+
T Consensus 344 d~~~~~~~~~~ 354 (523)
T 1oyw_A 344 DMAWLRRCLEE 354 (523)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 88888888876
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=394.14 Aligned_cols=339 Identities=20% Similarity=0.319 Sum_probs=143.2
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.|++.+...+ .||.+|+|+|.++++.++.+. +++++||||+|||++|++|+++.+.... .+.++||++|
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~-~~lv~~~TGsGKT~~~~~~~~~~l~~~~--------~~~~~lil~P 97 (394)
T 1fuu_A 27 ELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGH-DVLAQAQSGTGKTGTFSIAALQRIDTSV--------KAPQALMLAP 97 (394)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTC-CEEECCCSSHHHHHHHHHHHHHHCCTTC--------CSCCEEEECS
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHhhccC--------CCCCEEEEcC
Confidence 3677777666 589999999999999998874 5999999999999999999998875431 3458999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHh--hhccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
+++|+.|+++.+.+++...++++..++|+...... ....++|+|+||+++ +.+.+.. ..+.++++||+||||.+
T Consensus 98 ~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---~~~~~~~~vIiDEah~~ 174 (394)
T 1fuu_A 98 TRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRR---FRTDKIKMFILDEADEM 174 (394)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTS---SCCTTCCEEEEETHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCC---cchhhCcEEEEEChHHh
Confidence 99999999999999888889999999998775433 234789999999997 4444332 34678999999999998
Q ss_pred cc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEe-cC-CcccccceeEEEeeccCCh
Q 000114 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYF-DN-SYRPVPLSQQYIGIQVKKP 712 (2158)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f-~~-~~rpv~l~~~~~~~~~~~~ 712 (2158)
.+ .+...+..++. ..+...+++++|||+++ ++..++......+.... .. ...+..+...+......
T Consensus 175 ~~~~~~~~~~~~~~-------~~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 243 (394)
T 1fuu_A 175 LSSGFKEQIYQIFT-------LLPPTTQVVLLSATMPN--DVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEE-- 243 (394)
T ss_dssp HHTTCHHHHHHHHH-------HSCTTCEEEEECSSCCH--HHHHHHHHHCCSCEEEEECC--------------------
T ss_pred hCCCcHHHHHHHHH-------hCCCCceEEEEEEecCH--HHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCch--
Confidence 65 45555554433 24567899999999985 33333322212222211 11 11111222222211111
Q ss_pred hHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhh
Q 000114 713 LQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDL 792 (2158)
Q Consensus 713 ~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~l 792 (2158)
..+...+ ..+......+++||||++++.+..++..|...+
T Consensus 244 ~~~~~~l-----~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~----------------------------------- 283 (394)
T 1fuu_A 244 EYKYECL-----TDLYDSISVTQAVIFCNTRRKVEELTTKLRNDK----------------------------------- 283 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHH-----HHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcC-----------------------------------
Confidence 1111111 112223346799999999999999998886542
Q ss_pred ccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccC
Q 000114 793 LPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAG 872 (2158)
Q Consensus 793 l~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAG 872 (2158)
.++..+||+|+..+|..+++.|++|..+|||||+++++|+|+|++++||+ |+++. |..+|+||+||||
T Consensus 284 --~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~----~~~p~------s~~~~~Qr~GR~~ 351 (394)
T 1fuu_A 284 --FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN----YDLPA------NKENYIHRIGRGG 351 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --CeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEE----eCCCC------CHHHHHHHcCccc
Confidence 23567899999999999999999999999999999999999999999999 45443 5668999999999
Q ss_pred CCCCCCccEEEEEcCCCcHHHHHH
Q 000114 873 RPQYDSYGEGIIITGHSELRYYLS 896 (2158)
Q Consensus 873 R~g~d~~G~~iil~~~~~~~~y~~ 896 (2158)
|.| ..|.|+++++..+...+..
T Consensus 352 R~g--~~g~~~~~~~~~~~~~~~~ 373 (394)
T 1fuu_A 352 RFG--RKGVAINFVTNEDVGAMRE 373 (394)
T ss_dssp ------------------------
T ss_pred CCC--CCceEEEEEchhHHHHHHH
Confidence 987 6799999999887665544
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=397.12 Aligned_cols=467 Identities=16% Similarity=0.174 Sum_probs=310.6
Q ss_pred ccChhHHHHHhcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1326 ALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1326 ~L~~~~~~~l~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
.+.....+.+......|+++|.+++..++.++++++++||||||||++ +|++-.......+.+.+++|++|+++|+.|
T Consensus 78 ~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~ll~~~~~~~~~g~~ilvl~P~r~La~q 155 (773)
T 2xau_A 78 EFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQFVLFDEMPHLENTQVACTQPRRVAAMS 155 (773)
T ss_dssp BCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH--HHHHHHHHHCGGGGTCEEEEEESCHHHHHH
T ss_pred CCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHHHhccccCCCceEEecCchHHHHHH
Confidence 344444444433236889999999999998888999999999999993 444421111111112389999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHH
Q 000114 1406 RYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (2158)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e 1485 (2158)
+++++...++...+..++.-. ..+.......+|+++||+++...+.. ...+.++++||+||+|. ++...+
T Consensus 156 ~~~~l~~~~~~~v~~~vG~~i---~~~~~~~~~~~I~v~T~G~l~r~l~~---~~~l~~~~~lIlDEah~----R~ld~d 225 (773)
T 2xau_A 156 VAQRVAEEMDVKLGEEVGYSI---RFENKTSNKTILKYMTDGMLLREAME---DHDLSRYSCIILDEAHE----RTLATD 225 (773)
T ss_dssp HHHHHHHHTTCCBTTTEEEEE---TTEEECCTTCSEEEEEHHHHHHHHHH---STTCTTEEEEEECSGGG----CCHHHH
T ss_pred HHHHHHHHhCCchhheeccee---ccccccCCCCCEEEECHHHHHHHHhh---CccccCCCEEEecCccc----cccchH
Confidence 999888666543333333211 11112224669999999998765443 45689999999999995 112223
Q ss_pred HHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHH
Q 000114 1486 VIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFT 1565 (2158)
Q Consensus 1486 ~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~ 1565 (2158)
.++..++.+... ..+.++|++|||+ +.+++++|++... ++... .+..|+++.+.......+... ...
T Consensus 226 ~~~~~l~~l~~~-~~~~~iIl~SAT~-~~~~l~~~~~~~~--vi~v~--gr~~pv~~~~~~~~~~~~~~~-------~l~ 292 (773)
T 2xau_A 226 ILMGLLKQVVKR-RPDLKIIIMSATL-DAEKFQRYFNDAP--LLAVP--GRTYPVELYYTPEFQRDYLDS-------AIR 292 (773)
T ss_dssp HHHHHHHHHHHH-CTTCEEEEEESCS-CCHHHHHHTTSCC--EEECC--CCCCCEEEECCSSCCSCHHHH-------HHH
T ss_pred HHHHHHHHHHHh-CCCceEEEEeccc-cHHHHHHHhcCCC--ccccc--CcccceEEEEecCCchhHHHH-------HHH
Confidence 344445555433 3478999999999 6788999997532 34333 345566665544333332211 111
Q ss_pred HHHHhH--hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCC
Q 000114 1566 AIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGL 1643 (2158)
Q Consensus 1566 ~i~~~~--~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l 1643 (2158)
.+.... ...+++||||++++.|+.++..|...+. .+. ......+..|..+||+|
T Consensus 293 ~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~----------------------~l~--~~~~~~~~~v~~lhg~l 348 (773)
T 2xau_A 293 TVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGD----------------------QLV--REEGCGPLSVYPLYGSL 348 (773)
T ss_dssp HHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHH----------------------HHH--HHHCCCCEEEEEECTTC
T ss_pred HHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHH----------------------hhc--ccccCCCeEEEEeCCCC
Confidence 222111 3578999999999999999987743210 000 00011244589999999
Q ss_pred CHHHHHHHHHHHH-----cCCceEEEecCccccccCCCccEEEEe----cceeecCCCCcCc----CCCHHHHHHhhccC
Q 000114 1644 NKTDQEVVSALFE-----AGKIKVCVMSSSMCWGVPLTAHLVVVM----GTQYYDGQENAHT----DYPVTDLLQMMGHA 1710 (2158)
Q Consensus 1644 ~~~dR~~v~~~F~-----~g~i~VLVaT~~la~Gvdlp~~~vVI~----gt~~yd~~~~~~~----~~s~~~~lQr~GRa 1710 (2158)
+.++|..+++.|. +|.++|||||+++++|||+|++.+||. ....||++.+... |.|..+|+||+|||
T Consensus 349 ~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRa 428 (773)
T 2xau_A 349 PPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRA 428 (773)
T ss_dssp CHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGG
T ss_pred CHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhcccc
Confidence 9999999999999 999999999999999999999999994 4566888765543 88999999999999
Q ss_pred CCCCCCCceEEEEEecCChHHHHHHHhh--CCCccccchhhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCC
Q 000114 1711 SRPLLDNSGKCVILCHAPRKEYYKKFLY--DAFPVESHLHHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPN 1788 (2158)
Q Consensus 1711 GR~g~d~~G~~iil~~~~~~~~~~k~l~--~~~piES~L~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~ 1788 (2158)
||. ..|.|+.++... ++...+.. .|+...+.|...+... ...| +.+... |. +...|
T Consensus 429 GR~---~~G~~~~l~~~~--~~~~~l~~~~~pEi~r~~L~~~~L~l----~~~g-i~~~~~--------f~---~~~~p- 486 (773)
T 2xau_A 429 GRT---RPGKCFRLYTEE--AFQKELIEQSYPEILRSNLSSTVLEL----KKLG-IDDLVH--------FD---FMDPP- 486 (773)
T ss_dssp GSS---SSEEEEESSCHH--HHHHTSCSSCCCGGGGSCCHHHHHHH----HHTT-CCCGGG--------CC---CSSCC-
T ss_pred CCC---CCCEEEEEecHH--HhcccccccCCCccccCcHHHHHHHH----HHcC-CCChhh--------cc---ccCCC-
Confidence 996 689999998653 22233332 3444555553332211 1111 221110 10 11222
Q ss_pred CccCCCCCcccHHHHHHHHHHHHHHHHHhCCCeeEcCCCcccccccchhhhhcccChhhHHHHHhhcCCCCCHHHHHHHH
Q 000114 1789 YYNLQGVSHRHLSDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYISYTTIERFSSSLTPKTRMKGLLEVL 1868 (2158)
Q Consensus 1789 ~Y~~~~~~~~~~~~~l~~lve~~l~~L~~~~~I~~~~~~~~~~t~lG~i~s~y~I~~~T~~~f~~~l~~~~~~~~lL~il 1868 (2158)
..+.++.++..|...|+|. ++ ..+|.+|+++|.+|+++.+++++..+....+ ...++.|+
T Consensus 487 ---------------~~~~i~~a~~~L~~lgald--~~--~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c-~~~~l~i~ 546 (773)
T 2xau_A 487 ---------------APETMMRALEELNYLACLD--DE--GNLTPLGRLASQFPLDPMLAVMLIGSFEFQC-SQEILTIV 546 (773)
T ss_dssp ---------------CHHHHHHHHHHHHHTTSBC--TT--SCBCHHHHHHTTSSSCHHHHHHHHHGGGGTC-HHHHHHHH
T ss_pred ---------------cHHHHHHHHHHHHHcCCcc--cC--CCcChhhhhhccccCCHHHHHHHHhhcccCc-hhHHHHHH
Confidence 1368899999999999993 32 3578899999999999999999998765444 56777777
Q ss_pred hcCccccCCCCCcchH
Q 000114 1869 ASASEYAQLPIRPGEE 1884 (2158)
Q Consensus 1869 s~a~Ef~~i~vR~~E~ 1884 (2158)
|..+ +.++.+++.+.
T Consensus 547 a~ls-~~~~f~~~~~~ 561 (773)
T 2xau_A 547 AMLS-VPNVFIRPTKD 561 (773)
T ss_dssp HHHT-SCCCBCCCTTC
T ss_pred Hhcc-cCCcccCChHH
Confidence 6554 45666666554
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=387.32 Aligned_cols=330 Identities=21% Similarity=0.297 Sum_probs=245.3
Q ss_pred ChhhHhhc---CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 483 PEWAQPAF---KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 483 p~~~~~~f---~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
++.+...+ .||.+|+|+|.++++.++.++ +++++||||+|||++|++|++.. ..++|||+|+
T Consensus 10 ~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~-d~lv~apTGsGKTl~~~lp~l~~--------------~g~~lvi~P~ 74 (523)
T 1oyw_A 10 ESGAKQVLQETFGYQQFRPGQEEIIDTVLSGR-DCLVVMPTGGGKSLCYQIPALLL--------------NGLTVVVSPL 74 (523)
T ss_dssp HHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHS--------------SSEEEEECSC
T ss_pred CHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCC-CEEEECCCCcHHHHHHHHHHHHh--------------CCCEEEECCh
Confidence 34444444 489999999999999999875 59999999999999999998742 1279999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeecc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEI 632 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEa 632 (2158)
++|+.|+++.+.+. |+.+..++|+....... ....+|+|+|||++.. ..........++++||||||
T Consensus 75 ~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~--~~~~~~l~~~~~~~vViDEa 148 (523)
T 1oyw_A 75 ISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLML--DNFLEHLAHWNPVLLAVDEA 148 (523)
T ss_dssp HHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTS--TTHHHHHTTSCEEEEEESSG
T ss_pred HHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhC--hHHHHHHhhCCCCEEEEeCc
Confidence 99999999998874 78888898877644321 2458999999998621 00000112357899999999
Q ss_pred ccccc---CChhhHHHHHHHHHHHHhhccccccEEEEccccCCh--HHHHHHHhccccCceEEecCCcccccceeEEEee
Q 000114 633 HLLHD---NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGI 707 (2158)
Q Consensus 633 H~l~d---~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~--~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~ 707 (2158)
|++.+ .+.+.+..+ .++. ...+.+++++||||+++. .++..+++.. .+........+| .+...+.
T Consensus 149 H~i~~~g~~fr~~~~~l-~~l~----~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~--~~~~~~~~~~r~-~l~~~v~-- 218 (523)
T 1oyw_A 149 HCISQWGHDFRPEYAAL-GQLR----QRFPTLPFMALTATADDTTRQDIVRLLGLN--DPLIQISSFDRP-NIRYMLM-- 218 (523)
T ss_dssp GGGCTTSSCCCHHHHGG-GGHH----HHCTTSCEEEEESCCCHHHHHHHHHHHTCC--SCEEEECCCCCT-TEEEEEE--
T ss_pred cccCcCCCccHHHHHHH-HHHH----HhCCCCCEEEEeCCCCHHHHHHHHHHhCCC--CCeEEeCCCCCC-ceEEEEE--
Confidence 99965 244555433 2222 123568999999998763 5677777653 233333333343 2322222
Q ss_pred ccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcc
Q 000114 708 QVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSN 787 (2158)
Q Consensus 708 ~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 787 (2158)
.... .... +.+.+. ...++++||||+|++.++.++..|...+
T Consensus 219 ~~~~---~~~~----l~~~l~-~~~~~~~IVf~~sr~~~e~l~~~L~~~g------------------------------ 260 (523)
T 1oyw_A 219 EKFK---PLDQ----LMRYVQ-EQRGKSGIIYCNSRAKVEDTAARLQSKG------------------------------ 260 (523)
T ss_dssp ECSS---HHHH----HHHHHH-HTTTCCEEEECSSHHHHHHHHHHHHHTT------------------------------
T ss_pred eCCC---HHHH----HHHHHH-hcCCCcEEEEeCCHHHHHHHHHHHHHCC------------------------------
Confidence 2221 1121 222222 2356799999999999999999997643
Q ss_pred hhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHh
Q 000114 788 DLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQM 867 (2158)
Q Consensus 788 ~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr 867 (2158)
..+..|||+|+..+|..+++.|++|+++|||||+++++|||+|++++||+ |+++. |+.+|+||
T Consensus 261 -------~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~----~~~p~------s~~~y~Qr 323 (523)
T 1oyw_A 261 -------ISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVH----FDIPR------NIESYYQE 323 (523)
T ss_dssp -------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEE----SSCCS------SHHHHHHH
T ss_pred -------CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEE----ECCCC------CHHHHHHH
Confidence 34788999999999999999999999999999999999999999999999 77665 88999999
Q ss_pred hcccCCCCCCCccEEEEEcCCCcHHHHHHhhcC
Q 000114 868 LGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQ 900 (2158)
Q Consensus 868 ~GRAGR~g~d~~G~~iil~~~~~~~~y~~ll~~ 900 (2158)
+|||||.| ..|.|+++++..+...+..++..
T Consensus 324 ~GRaGR~g--~~~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 324 TGRAGRDG--LPAEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp HTTSCTTS--SCEEEEEEECHHHHHHHHHHHHT
T ss_pred hccccCCC--CCceEEEEeCHHHHHHHHHHHhc
Confidence 99999987 56999999999888877777665
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=384.85 Aligned_cols=342 Identities=17% Similarity=0.249 Sum_probs=143.4
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
.|+....+.+.. ||..|+|+|.++++.+++++ +++++||||||||++|.+|++..+.....++ +++|++|+++|+.
T Consensus 27 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~-~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~--~~lil~P~~~L~~ 103 (394)
T 1fuu_A 27 ELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGH-DVLAQAQSGTGKTGTFSIAALQRIDTSVKAP--QALMLAPTRELAL 103 (394)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTC-CEEECCCSSHHHHHHHHHHHHHHCCTTCCSC--CEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCC-CEEEECCCCChHHHHHHHHHHHHhhccCCCC--CEEEEcCCHHHHH
Confidence 355666777766 79999999999999999864 5999999999999999999998876632333 8999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcchh--hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCC
Q 000114 1405 ERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~ltG~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~ 1482 (2158)
|+++.+.+ +....++++..++|+.... ...+..++|+|+||+++...+.+ ....+.+++++|+||||++.+..
T Consensus 104 q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~vIiDEah~~~~~~-- 178 (394)
T 1fuu_A 104 QIQKVVMA-LAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR--RRFRTDKIKMFILDEADEMLSSG-- 178 (394)
T ss_dssp HHHHHHHH-HTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHHHTT--
T ss_pred HHHHHHHH-HhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHh--CCcchhhCcEEEEEChHHhhCCC--
Confidence 99999984 4444588899999987653 33445789999999998877665 23457889999999999986543
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEeccCCCCh--HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcC
Q 000114 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMT 1560 (2158)
Q Consensus 1483 ~~e~~isrl~~i~~~~~~~~riV~lSATl~n~--~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~ 1560 (2158)
+...+..+...++...+++++|||+++. .....|+.... .+........+..+........... ..
T Consensus 179 ----~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 246 (394)
T 1fuu_A 179 ----FKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPV-RILVKKDELTLEGIKQFYVNVEEEE-------YK 246 (394)
T ss_dssp ----CHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCE-EEEECC----------------------------
T ss_pred ----cHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCe-EEEecCccccCCCceEEEEEcCchh-------hH
Confidence 1223333444456789999999999863 22334443221 1111111111111111110000000 00
Q ss_pred hHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEec
Q 000114 1561 KPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLH 1640 (2158)
Q Consensus 1561 k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H 1640 (2158)
......+... ...+++||||++++.++.++..|.. .+.++..+|
T Consensus 247 ~~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~~ 290 (394)
T 1fuu_A 247 YECLTDLYDS-ISVTQAVIFCNTRRKVEELTTKLRN-----------------------------------DKFTVSAIY 290 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhc-CCCCcEEEEECCHHHHHHHHHHHHH-----------------------------------cCCeEEEee
Confidence 0111122222 3467899999999999888865521 234588999
Q ss_pred CCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceE
Q 000114 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2158)
Q Consensus 1641 ~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~ 1720 (2158)
|+|+..+|..+++.|++|..+|||||+++++|+|+|++.+|| ++..|.+..+|+||+|||||.| ..|.
T Consensus 291 ~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi----------~~~~p~s~~~~~Qr~GR~~R~g--~~g~ 358 (394)
T 1fuu_A 291 SDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI----------NYDLPANKENYIHRIGRGGRFG--RKGV 358 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEE----------EeCCCCCHHHHHHHcCcccCCC--CCce
Confidence 999999999999999999999999999999999999999998 5566778999999999999987 6899
Q ss_pred EEEEecCChHHHHHH
Q 000114 1721 CVILCHAPRKEYYKK 1735 (2158)
Q Consensus 1721 ~iil~~~~~~~~~~k 1735 (2158)
|++++.+.+...+++
T Consensus 359 ~~~~~~~~~~~~~~~ 373 (394)
T 1fuu_A 359 AINFVTNEDVGAMRE 373 (394)
T ss_dssp ---------------
T ss_pred EEEEEchhHHHHHHH
Confidence 999998876554443
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=359.04 Aligned_cols=321 Identities=19% Similarity=0.279 Sum_probs=239.3
Q ss_pred HHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHH
Q 000114 1331 LYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (2158)
Q Consensus 1331 ~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~ 1409 (2158)
..+.+.. ||..|+|+|.++++.++++ ++++++||||||||++|+++++.. +. +++|++|+++|+.|+++.
T Consensus 5 i~~~l~~~g~~~l~~~Q~~~i~~i~~~-~~~lv~~~TGsGKT~~~~~~~~~~------~~--~~liv~P~~~L~~q~~~~ 75 (337)
T 2z0m_A 5 IEQAIREMGFKNFTEVQSKTIPLMLQG-KNVVVRAKTGSGKTAAYAIPILEL------GM--KSLVVTPTRELTRQVASH 75 (337)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHH------TC--CEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEEcCCCCcHHHHHHHHHHhh------cC--CEEEEeCCHHHHHHHHHH
Confidence 3344443 7999999999999999875 569999999999999999998752 33 899999999999999999
Q ss_pred HHHHhcCCCCcEEEEEcCCcchh--hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHH
Q 000114 1410 WEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVI 1487 (2158)
Q Consensus 1410 ~~~~f~~~~g~~v~~ltG~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~ 1487 (2158)
++ .+....+.++..++|+.... ...+..++|+|+||+++..++.. ....+.+++++|+||||++.++. +
T Consensus 76 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~~------~ 146 (337)
T 2z0m_A 76 IR-DIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSK--GVIDLSSFEIVIIDEADLMFEMG------F 146 (337)
T ss_dssp HH-HHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHT--TSCCGGGCSEEEEESHHHHHHTT------C
T ss_pred HH-HHhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHc--CCcchhhCcEEEEEChHHhhccc------c
Confidence 99 55555678899999987654 33455689999999999877654 23357889999999999987553 2
Q ss_pred HHHHHHHHhhcCCCceEEEeccCCCCh--HHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHH
Q 000114 1488 VSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFT 1565 (2158)
Q Consensus 1488 isrl~~i~~~~~~~~riV~lSATl~n~--~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~ 1565 (2158)
...+..+....+...+++++|||+++. ..+..|+.... .+ ........+...+....... +....
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~---------~~~~~ 213 (337)
T 2z0m_A 147 IDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYE--EI--EACIGLANVEHKFVHVKDDW---------RSKVQ 213 (337)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCE--EE--ECSGGGGGEEEEEEECSSSS---------HHHHH
T ss_pred HHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCce--ee--ecccccCCceEEEEEeChHH---------HHHHH
Confidence 334444555566788999999999763 34455554321 11 11122222232222222111 11112
Q ss_pred HHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCH
Q 000114 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (2158)
Q Consensus 1566 ~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~ 1645 (2158)
.+ .. ..++++||||++++.++.++..| ..+..+||+++.
T Consensus 214 ~~-~~-~~~~~~lvf~~~~~~~~~l~~~l---------------------------------------~~~~~~~~~~~~ 252 (337)
T 2z0m_A 214 AL-RE-NKDKGVIVFVRTRNRVAKLVRLF---------------------------------------DNAIELRGDLPQ 252 (337)
T ss_dssp HH-HT-CCCSSEEEECSCHHHHHHHHTTC---------------------------------------TTEEEECTTSCH
T ss_pred HH-Hh-CCCCcEEEEEcCHHHHHHHHHHh---------------------------------------hhhhhhcCCCCH
Confidence 22 22 46788999999999998777322 147889999999
Q ss_pred HHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEe
Q 000114 1646 TDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2158)
Q Consensus 1646 ~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~ 1725 (2158)
.+|..+++.|++|+++|||||+++++|+|+|++.+|| ++..|.+..+|+||+|||||.| ..|.|++++
T Consensus 253 ~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi----------~~~~~~s~~~~~Q~~GR~gR~g--~~g~~~~~~ 320 (337)
T 2z0m_A 253 SVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVI----------NFDAPQDLRTYIHRIGRTGRMG--RKGEAITFI 320 (337)
T ss_dssp HHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEE----------ESSCCSSHHHHHHHHTTBCGGG--CCEEEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEE----------EecCCCCHHHhhHhcCccccCC--CCceEEEEE
Confidence 9999999999999999999999999999999999888 4566778999999999999987 678999888
Q ss_pred cCChHHHHHHH
Q 000114 1726 HAPRKEYYKKF 1736 (2158)
Q Consensus 1726 ~~~~~~~~~k~ 1736 (2158)
. .+..+.+++
T Consensus 321 ~-~~~~~~~~i 330 (337)
T 2z0m_A 321 L-NEYWLEKEV 330 (337)
T ss_dssp S-SCHHHHHHH
T ss_pred e-CcHHHHHHH
Confidence 8 555555544
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=371.04 Aligned_cols=330 Identities=17% Similarity=0.195 Sum_probs=228.9
Q ss_pred CChhhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000114 482 MPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2158)
Q Consensus 482 lp~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ka 561 (2158)
+.++++..| |+ +|+|+|.++++.++.++ |++++||||||||++|+++++..+.. +.++||++|+++
T Consensus 10 ~~~~l~~~~-~~-~~~~~Q~~~i~~i~~~~-~~lv~apTGsGKT~~~l~~~~~~~~~-----------~~~~lil~Pt~~ 75 (414)
T 3oiy_A 10 FRSFFKKKF-GK-DLTGYQRLWAKRIVQGK-SFTMVAPTGVGKTTFGMMTALWLARK-----------GKKSALVFPTVT 75 (414)
T ss_dssp HHHHHHHHH-SS-CCCHHHHHHHHHHTTTC-CEECCSCSSSSHHHHHHHHHHHHHTT-----------TCCEEEEESSHH
T ss_pred HHHHHHHhc-CC-CCCHHHHHHHHHHhcCC-CEEEEeCCCCCHHHHHHHHHHHHhcC-----------CCEEEEEECCHH
Confidence 345555555 45 79999999999998775 69999999999999999998887622 348999999999
Q ss_pred HHHHHHHHHHhhcccCCcEEEEEeCCCccCHh-----h--hccccEEEcchhHHHHHHhccCCCccccccceEEeecccc
Q 000114 562 LVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ-----Q--IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 562 La~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~-----~--~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
|+.|+++.+.+++. .|+++..++|+...... . ...++|+|+||+++....+. ..+.++++|||||||+
T Consensus 76 L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~----~~~~~~~~iViDEaH~ 150 (414)
T 3oiy_A 76 LVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVDA 150 (414)
T ss_dssp HHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH----HTTCCCSEEEESCHHH
T ss_pred HHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH----hccccccEEEEeChHh
Confidence 99999999999777 88999999999876321 1 12489999999998333332 3355799999999998
Q ss_pred ccc------------CChhh-HHHHHHHHHH--HHhhc--cccccEEEEccc-cCCh---HHHHHHHhccccCceEEecC
Q 000114 635 LHD------------NRGPV-LESIVARTVR--QIETT--KEHIRLVGLSAT-LPNY---EDVALFLRVNLEKGLFYFDN 693 (2158)
Q Consensus 635 l~d------------~rg~~-le~iv~r~~~--~~~~~--~~~~riv~lSAT-lpn~---~dv~~~l~~~~~~~~~~f~~ 693 (2158)
+.+ ++.+. +..++..+.. ..... ....+++++||| .|.. .-...++..... ..
T Consensus 151 ~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~------~~ 224 (414)
T 3oiy_A 151 VLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVG------RL 224 (414)
T ss_dssp HHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSS------CC
T ss_pred hhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcC------cc
Confidence 753 22222 4444433310 00011 167899999999 4432 112233332211 11
Q ss_pred CcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchh
Q 000114 694 SYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVS 773 (2158)
Q Consensus 694 ~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~ 773 (2158)
...+..+.+.+... .+ ...+ .+.+.. .++++||||++++.|..++..|...+.
T Consensus 225 ~~~~~~i~~~~~~~--~~----~~~l----~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~--------------- 277 (414)
T 3oiy_A 225 VSVARNITHVRISS--RS----KEKL----VELLEI--FRDGILIFAQTEEEGKELYEYLKRFKF--------------- 277 (414)
T ss_dssp CCCCCSEEEEEESS--CC----HHHH----HHHHHH--HCSSEEEEESSHHHHHHHHHHHHHTTC---------------
T ss_pred ccccccchheeecc--CH----HHHH----HHHHHH--cCCCEEEEECCHHHHHHHHHHHHHcCC---------------
Confidence 11122233333322 11 1111 222222 258999999999999999999987542
Q ss_pred HHHHHhhhhccCcchhhhhccCCeE-EecCCCCHHHHHHHHHHHhCCCceEEEe----chhhhhccCCCc-eEEEEeccc
Q 000114 774 REILQSHTDMVKSNDLKDLLPYGFA-IHHAGMTRGDRQLVEDLFGDGHVQVLVS----TATLAWGVNLPA-HTVIIKGTQ 847 (2158)
Q Consensus 774 ~~~l~~~~~~~~~~~l~~ll~~gv~-~hHagl~~~~R~~v~~~F~~g~i~VLVa----T~tla~GVdlP~-v~vVI~~~~ 847 (2158)
.+. .+||. +|. ++.|++|.++|||| |+++++|+|+|+ +++||+
T Consensus 278 ----------------------~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~--- 326 (414)
T 3oiy_A 278 ----------------------NVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF--- 326 (414)
T ss_dssp ----------------------CEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEE---
T ss_pred ----------------------ceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEE---
Confidence 244 56874 444 99999999999999 999999999999 999999
Q ss_pred ccCCCCCccccCCHHHHHHhhcccCCCCCC--CccEEEEEcCCCc-HHHHHHhhc
Q 000114 848 IYNPEKGAWTELSPLDIMQMLGRAGRPQYD--SYGEGIIITGHSE-LRYYLSLMN 899 (2158)
Q Consensus 848 ~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d--~~G~~iil~~~~~-~~~y~~ll~ 899 (2158)
|+++.+ .+..+|+||+|||||.|.+ +.|.+++++.+.. ...+.+.+.
T Consensus 327 -~~~p~~----~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 327 -WGTPSG----PDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 376 (414)
T ss_dssp -ESCCTT----TCHHHHHHHHGGGCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred -ECCCCC----CCHHHHHHHhCccccCCCCCCcceEEEEEEccHHHHHHHHHHhc
Confidence 666621 2889999999999999876 5899999994322 233444455
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=357.76 Aligned_cols=317 Identities=16% Similarity=0.144 Sum_probs=222.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
| .|+|+|.++++.+++++ |++++||||||||++|+++++..... ++ +++|++|+++|+.|+++.+++ ++. .
T Consensus 20 ~-~~~~~Q~~~i~~i~~~~-~~lv~apTGsGKT~~~l~~~~~~~~~---~~--~~lil~Pt~~L~~q~~~~~~~-~~~-~ 90 (414)
T 3oiy_A 20 K-DLTGYQRLWAKRIVQGK-SFTMVAPTGVGKTTFGMMTALWLARK---GK--KSALVFPTVTLVKQTLERLQK-LAD-E 90 (414)
T ss_dssp S-CCCHHHHHHHHHHTTTC-CEECCSCSSSSHHHHHHHHHHHHHTT---TC--CEEEEESSHHHHHHHHHHHHH-HCC-S
T ss_pred C-CCCHHHHHHHHHHhcCC-CEEEEeCCCCCHHHHHHHHHHHHhcC---CC--EEEEEECCHHHHHHHHHHHHH-Hcc-C
Confidence 5 79999999999999854 69999999999999999998876632 34 899999999999999999995 665 6
Q ss_pred CcEEEEEcCCcchh-----hhcc-c-CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHH--
Q 000114 1419 GMRVVELTGETAMD-----LKLL-E-KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVS-- 1489 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~-----~~~l-~-~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~is-- 1489 (2158)
|+++..++|+.+.. ...+ . .++|+|+||+++..++.. ..+.++++||+||||++.+++ ..++..+.
T Consensus 91 ~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~----~~~~~~~~iViDEaH~~~~~~-~~~d~~l~~~ 165 (414)
T 3oiy_A 91 KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVDAVLKAS-RNIDTLLMMV 165 (414)
T ss_dssp SCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH----HTTCCCSEEEESCHHHHHHCH-HHHHHHHHHT
T ss_pred CceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH----hccccccEEEEeChHhhhhcc-chhhhHHhhc
Confidence 89999999998762 1222 2 379999999999776654 345689999999999886431 00111111
Q ss_pred ----H-HHHHHhhcC-----------CCceEEEeccCC-CCh---HHHHHHhccCCCceEecCCCCcccccEEEEecccc
Q 000114 1490 ----R-MRYIASQVE-----------NKIRIVALSTSL-ANA---KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDI 1549 (2158)
Q Consensus 1490 ----r-l~~i~~~~~-----------~~~riV~lSATl-~n~---~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~ 1549 (2158)
. +..+...++ .+.+++++|||+ +.. .-...+++..... ....+..+...+...
T Consensus 166 ~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~-- 238 (414)
T 3oiy_A 166 GIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGR-----LVSVARNITHVRISS-- 238 (414)
T ss_dssp TCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSC-----CCCCCCSEEEEEESS--
T ss_pred CCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCc-----cccccccchheeecc--
Confidence 1 222222222 678999999994 432 2233444422211 111111222222211
Q ss_pred cchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHH
Q 000114 1550 TNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLK 1629 (2158)
Q Consensus 1550 ~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~ 1629 (2158)
.. ......+... .++++||||++++.|+.++..|..
T Consensus 239 -~~--------~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~--------------------------------- 274 (414)
T 3oiy_A 239 -RS--------KEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKR--------------------------------- 274 (414)
T ss_dssp -CC--------HHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHH---------------------------------
T ss_pred -CH--------HHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHH---------------------------------
Confidence 11 1111222222 358999999999999999876632
Q ss_pred HHhcccEE-EecCCCCHHHHHHHHHHHHcCCceEEEe----cCccccccCCCc-cEEEEecceeecCCCCcCcC--CCHH
Q 000114 1630 ATLRHGVG-YLHEGLNKTDQEVVSALFEAGKIKVCVM----SSSMCWGVPLTA-HLVVVMGTQYYDGQENAHTD--YPVT 1701 (2158)
Q Consensus 1630 ~~l~~gv~-~~H~~l~~~dR~~v~~~F~~g~i~VLVa----T~~la~Gvdlp~-~~vVI~gt~~yd~~~~~~~~--~s~~ 1701 (2158)
.+..+. .+||. +|+ ++.|++|+++|||| |+++++|+|+|+ +.+|| +++.| .+..
T Consensus 275 --~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI----------~~~~p~~~~~~ 336 (414)
T 3oiy_A 275 --FKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVI----------FWGTPSGPDVY 336 (414)
T ss_dssp --TTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEE----------EESCCTTTCHH
T ss_pred --cCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEE----------EECCCCCCCHH
Confidence 234576 88884 444 99999999999999 999999999999 88888 56677 7999
Q ss_pred HHHHhhccCCCCCCC--CceEEEEEecCCh-HHHHHHHhh
Q 000114 1702 DLLQMMGHASRPLLD--NSGKCVILCHAPR-KEYYKKFLY 1738 (2158)
Q Consensus 1702 ~~lQr~GRaGR~g~d--~~G~~iil~~~~~-~~~~~k~l~ 1738 (2158)
+|+||+|||||.|.+ ..|.|++++.+.. ...+++++.
T Consensus 337 ~y~qr~GR~gR~g~~~~~~g~~i~~~~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 337 TYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 376 (414)
T ss_dssp HHHHHHGGGCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred HHHHHhCccccCCCCCCcceEEEEEEccHHHHHHHHHHhc
Confidence 999999999998865 5899999994332 234555555
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=373.07 Aligned_cols=350 Identities=19% Similarity=0.284 Sum_probs=192.0
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
..+|+|+|.++++.++.+ .+++++||||||||++|++|+++.+...... .+.++|||+|+++|+.|+++.|.+
T Consensus 5 ~~~~~~~Q~~~i~~~~~~-~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~------~~~~~lil~P~~~L~~q~~~~~~~ 77 (556)
T 4a2p_A 5 TKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAG------RKAKVVFLATKVPVYEQQKNVFKH 77 (556)
T ss_dssp ---CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSS------CCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHHhCccc------CCCeEEEEeCCHHHHHHHHHHHHH
Confidence 357999999999999876 4599999999999999999999998765321 245899999999999999999999
Q ss_pred hcccCCcEEEEEeCCCccCHh---hhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHH
Q 000114 573 RLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVAR 649 (2158)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r 649 (2158)
++...++++..++|+...... ....++|+|+||+++....+... ...+.++++|||||||++.+.. + +..++.+
T Consensus 78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~~vViDEah~~~~~~-~-~~~~~~~ 154 (556)
T 4a2p_A 78 HFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT-LTSLSIFTLMIFDECHNTTGNH-P-YNVLMTR 154 (556)
T ss_dssp HHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSS-CCCSTTCSEEEEETGGGCSTTS-H-HHHHHHH
T ss_pred HhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCc-ccccccCCEEEEECCcccCCcc-h-HHHHHHH
Confidence 988889999999998865432 24578999999999844443321 1257889999999999997543 3 5555544
Q ss_pred HHHHH-hhccccccEEEEccccC--ChHHHHHHHhc------cccCceEEecCC-------cccccceeEEEeecc--CC
Q 000114 650 TVRQI-ETTKEHIRLVGLSATLP--NYEDVALFLRV------NLEKGLFYFDNS-------YRPVPLSQQYIGIQV--KK 711 (2158)
Q Consensus 650 ~~~~~-~~~~~~~riv~lSATlp--n~~dv~~~l~~------~~~~~~~~f~~~-------~rpv~l~~~~~~~~~--~~ 711 (2158)
..... ....+..++++||||++ +..++..|+.. ......+..... +.+.+... +..+.. ..
T Consensus 155 ~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 233 (556)
T 4a2p_A 155 YLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEID-VRLVKRRIHN 233 (556)
T ss_dssp HHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEE-EEECCCCSCC
T ss_pred HHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceE-EEEcCCCcCC
Confidence 43321 22245689999999984 34444444321 101011111110 00111110 110000 00
Q ss_pred hhH--------------------------------------HH-------------------------------------
Q 000114 712 PLQ--------------------------------------RF------------------------------------- 716 (2158)
Q Consensus 712 ~~~--------------------------------------~~------------------------------------- 716 (2158)
... ..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (556)
T 4a2p_A 234 PFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYND 313 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHH
Confidence 000 00
Q ss_pred --------------HH-------------------------------------------hhHHHHHHHHHH---hCCCeE
Q 000114 717 --------------QL-------------------------------------------MNDLCYEKVVAV---AGKHQV 736 (2158)
Q Consensus 717 --------------~~-------------------------------------------l~~~~~~~i~~~---~~~~~v 736 (2158)
.. -...+.+.+.+. ..++++
T Consensus 314 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~ 393 (556)
T 4a2p_A 314 ALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRT 393 (556)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCE
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceE
Confidence 00 000011111121 346899
Q ss_pred EEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHH
Q 000114 737 LIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLF 816 (2158)
Q Consensus 737 LVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F 816 (2158)
||||+++..+..++..|........ + ....+...+...+||+|+..+|..+++.|
T Consensus 394 lVF~~~~~~~~~l~~~L~~~~~~~~-----~--------------------~~~~~~g~~~~~~~~~~~~~~R~~~~~~F 448 (556)
T 4a2p_A 394 LLFAKTRALVSALKKCMEENPILNY-----I--------------------KPGVLMGRGRRDQTTGMTLPSQKGVLDAF 448 (556)
T ss_dssp EEEESSHHHHHHHHHHHTTCSGGGS-----C--------------------CEEC-------------------------
T ss_pred EEEEccHHHHHHHHHHHHhCCCcce-----e--------------------eeeEEEccCCcccccccCHHHHHHHHHHh
Confidence 9999999999999998875310000 0 00112344566779999999999999999
Q ss_pred hC-CCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHH
Q 000114 817 GD-GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (2158)
Q Consensus 817 ~~-g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~ 892 (2158)
++ |.++|||||+++++|||+|++++||+ ||++. ++.+|+||+|| ||. ..|.++++++..+..
T Consensus 449 ~~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d~p~------s~~~~~Qr~GR-gR~---~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 449 KTSKDNRLLIATSVADEGIDIVQCNLVVL----YEYSG------NVTKMIQVRGR-GRA---AGSKCILVTSKTEVV 511 (556)
T ss_dssp -----CCEEEEEC-----------CEEEE----ETCCS------CHHHHHHC------------CCEEEEESCHHHH
T ss_pred cccCceEEEEEcCchhcCCCchhCCEEEE----eCCCC------CHHHHHHhcCC-CCC---CCceEEEEEeCcchH
Confidence 99 99999999999999999999999999 77665 78899999999 996 569999999886643
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=366.61 Aligned_cols=345 Identities=19% Similarity=0.212 Sum_probs=215.4
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
+|+|+|.++++.++.+ .+++++||||||||++|++|+++.+...... .+.++|||+|+++|+.|+++.|.+++
T Consensus 4 ~~~~~Q~~~i~~~~~~-~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~------~~~~~lil~P~~~L~~q~~~~~~~~~ 76 (555)
T 3tbk_A 4 KPRNYQLELALPAKKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPCG------QKGKVVFFANQIPVYEQQATVFSRYF 76 (555)
T ss_dssp CCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSS------CCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCC-CCEEEEeCCCChHHHHHHHHHHHHHHhcccC------CCCEEEEEeCCHHHHHHHHHHHHHHh
Confidence 6899999999999876 4699999999999999999999998765321 24589999999999999999999999
Q ss_pred ccCCcEEEEEeCCCccCHh---hhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHH
Q 000114 575 QMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTV 651 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~ 651 (2158)
...++++..++|+.....+ ....++|+|+||+++........ ...+.++++|||||||++.+.. + +..++.+.+
T Consensus 77 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~~vViDEah~~~~~~-~-~~~~~~~~~ 153 (555)
T 3tbk_A 77 ERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA-IPSLSVFTLMIFDECHNTSKNH-P-YNQIMFRYL 153 (555)
T ss_dssp HTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSS-SCCGGGCSEEEETTGGGCSTTC-H-HHHHHHHHH
T ss_pred ccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCc-ccccccCCEEEEECccccCCcc-h-HHHHHHHHH
Confidence 8889999999999865432 34578999999999844443321 1257889999999999997643 2 566655544
Q ss_pred HHHhh--ccccccEEEEccccCCh--HH----------HHHHHhccccCceEEecC-------CcccccceeEEEeecc-
Q 000114 652 RQIET--TKEHIRLVGLSATLPNY--ED----------VALFLRVNLEKGLFYFDN-------SYRPVPLSQQYIGIQV- 709 (2158)
Q Consensus 652 ~~~~~--~~~~~riv~lSATlpn~--~d----------v~~~l~~~~~~~~~~f~~-------~~rpv~l~~~~~~~~~- 709 (2158)
..... ....+++++||||+++. .+ +..++.. ..+.... .+.+.+... +..+..
T Consensus 154 ~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~----~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~ 228 (555)
T 3tbk_A 154 DHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDA----SVIATVRDNVAELEQVVYKPQKI-SRKVASR 228 (555)
T ss_dssp HHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTC----SEEECCCSCHHHHHTTCCCCCEE-EEECCCC
T ss_pred HhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCC----eeeeccccCHHHHHhhcCCCceE-EEEecCc
Confidence 32211 13568999999998542 11 2222221 1111111 011111111 110110
Q ss_pred -CChhH---------------------------------------HHHH-------------------------------
Q 000114 710 -KKPLQ---------------------------------------RFQL------------------------------- 718 (2158)
Q Consensus 710 -~~~~~---------------------------------------~~~~------------------------------- 718 (2158)
..... ....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (555)
T 3tbk_A 229 TSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLR 308 (555)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHH
Confidence 00000 0000
Q ss_pred ---------------------------------------------------------------hhHHHHHHHHH---HhC
Q 000114 719 ---------------------------------------------------------------MNDLCYEKVVA---VAG 732 (2158)
Q Consensus 719 ---------------------------------------------------------------l~~~~~~~i~~---~~~ 732 (2158)
-...+.+.+.+ ...
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 388 (555)
T 3tbk_A 309 KYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKP 388 (555)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCC
Confidence 00001111111 123
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHH
Q 000114 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2158)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v 812 (2158)
.+++||||+++..+..++..|...+...... ...+...+...+||+|+..+|..+
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~-------------------------~~~~~g~~~~~~~~~~~~~~R~~~ 443 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLK-------------------------PGILTGRGRTNRATGMTLPAQKCV 443 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCC-------------------------EEECCC------------------
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCcee-------------------------eeEEEecCCcccccccCHHHHHHH
Confidence 5899999999999999999998764321100 011233456677999999999999
Q ss_pred HHHHhC-CCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcH
Q 000114 813 EDLFGD-GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2158)
Q Consensus 813 ~~~F~~-g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~ 891 (2158)
++.|++ |.++|||||+++++|||+|++++||+++.|+++. +|+||+|| ||. ..|.++++++..+.
T Consensus 444 ~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~----------~~~Qr~GR-gR~---~~g~~~~l~~~~~~ 509 (555)
T 3tbk_A 444 LEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVI----------KMIQTRGR-GRA---RDSKCFLLTSSADV 509 (555)
T ss_dssp --------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCC----------CEECSSCC-CTT---TSCEEEEEESCHHH
T ss_pred HHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHH----------HHHHhcCc-CcC---CCceEEEEEcCCCH
Confidence 999999 9999999999999999999999999966666555 59999999 885 57999999988765
Q ss_pred HH
Q 000114 892 RY 893 (2158)
Q Consensus 892 ~~ 893 (2158)
..
T Consensus 510 ~~ 511 (555)
T 3tbk_A 510 IE 511 (555)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-32 Score=363.20 Aligned_cols=349 Identities=20% Similarity=0.249 Sum_probs=189.2
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
...|+|+|.++++.++.+ .|+++++|||||||++|++|+++.+.......+.++|||+|+++|+.|+++.|++.+.. .
T Consensus 5 ~~~~~~~Q~~~i~~~~~~-~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~ 82 (556)
T 4a2p_A 5 TKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER-Q 82 (556)
T ss_dssp ---CCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG-G
T ss_pred CCCCCHHHHHHHHHHHcC-CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc-c
Confidence 347999999999999875 56999999999999999999999887743222348999999999999999999965543 4
Q ss_pred CcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccc-cccceeEEEecccccccCCCCChHHHHHHHHHHH
Q 000114 1419 GMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRK-YVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYI 1494 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~-~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i 1494 (2158)
++++..++|+..... .....++|+|+||+++..++.. ... .+.++++||+||||++.+.. + +..++.++...
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~~vViDEah~~~~~~-~-~~~~~~~~~~~ 158 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTGNH-P-YNVLMTRYLEQ 158 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHS--SSCCCSTTCSEEEEETGGGCSTTS-H-HHHHHHHHHHH
T ss_pred CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHh--CcccccccCCEEEEECCcccCCcc-h-HHHHHHHHHHh
Confidence 789999999875442 2345679999999999887755 222 57889999999999997543 2 55554333221
Q ss_pred -HhhcCCCceEEEeccCCC--ChHHHHHHhccC-------CCceEecCCC---------CcccccEEEEecccccchHH-
Q 000114 1495 -ASQVENKIRIVALSTSLA--NAKDLGEWIGAT-------SHGLFNFPPG---------VRPVPLEIHIQGVDITNFEA- 1554 (2158)
Q Consensus 1495 -~~~~~~~~riV~lSATl~--n~~dl~~wl~~~-------~~~i~~f~~~---------~rpv~l~~~i~~~~~~~~~~- 1554 (2158)
........++++||||++ +..++.+|+... ....+..... .+|..............+..
T Consensus 159 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 238 (556)
T ss_dssp HHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHH
T ss_pred hhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHH
Confidence 111135689999999994 344444443210 0001111000 01111111111000000000
Q ss_pred ------------------------------------HHHh----------------------------------------
Q 000114 1555 ------------------------------------RMQA---------------------------------------- 1558 (2158)
Q Consensus 1555 ------------------------------------~~~~---------------------------------------- 1558 (2158)
....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (556)
T 4a2p_A 239 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 318 (556)
T ss_dssp HHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000
Q ss_pred --------------------------------------------------cChHHHHHHH----HhH--hcCCCEEEEec
Q 000114 1559 --------------------------------------------------MTKPTFTAIV----QHA--KNEKPALVFVP 1582 (2158)
Q Consensus 1559 --------------------------------------------------~~k~~~~~i~----~~~--~~~~~~IVFv~ 1582 (2158)
...+....+. ... .++.++||||+
T Consensus 319 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~ 398 (556)
T 4a2p_A 319 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 398 (556)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEc
Confidence 0011111111 111 45689999999
Q ss_pred ChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHc-CCce
Q 000114 1583 SRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA-GKIK 1661 (2158)
Q Consensus 1583 sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~-g~i~ 1661 (2158)
++..+..++..|............ ...+.+...+||+|+..+|..+++.|++ |.++
T Consensus 399 ~~~~~~~l~~~L~~~~~~~~~~~~-----------------------~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~ 455 (556)
T 4a2p_A 399 TRALVSALKKCMEENPILNYIKPG-----------------------VLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR 455 (556)
T ss_dssp SHHHHHHHHHHHTTCSGGGSCCEE-----------------------C------------------------------CC
T ss_pred cHHHHHHHHHHHHhCCCcceeeee-----------------------EEEccCCcccccccCHHHHHHHHHHhcccCceE
Confidence 999999999877432110000000 1134556778999999999999999999 9999
Q ss_pred EEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChH
Q 000114 1662 VCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK 1730 (2158)
Q Consensus 1662 VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~ 1730 (2158)
|||||+++++|+|+|++.+|| +++.|.++..|+||+|| ||. ..|.|++++.....
T Consensus 456 vLvaT~~~~~GiDip~v~~VI----------~~d~p~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 456 LLIATSVADEGIDIVQCNLVV----------LYEYSGNVTKMIQVRGR-GRA---AGSKCILVTSKTEV 510 (556)
T ss_dssp EEEEEC-----------CEEE----------EETCCSCHHHHHHC------------CCEEEEESCHHH
T ss_pred EEEEcCchhcCCCchhCCEEE----------EeCCCCCHHHHHHhcCC-CCC---CCceEEEEEeCcch
Confidence 999999999999999999999 56678899999999999 995 68999999887653
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-32 Score=370.60 Aligned_cols=354 Identities=19% Similarity=0.227 Sum_probs=199.2
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.|+.+|+++|.++++.++.+ .|+|+++|||+|||++|++++++.+...... .+.++||++|+++|+.|+.+.+
T Consensus 9 ~g~~~lr~~Q~~~i~~~l~g-~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~------~~~~~lvl~Pt~~L~~Q~~~~~ 81 (696)
T 2ykg_A 9 YSPFKPRNYQLELALPAMKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPQG------QKGKVVFFANQIPVYEQNKSVF 81 (696)
T ss_dssp TC--CCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHHSCTT------CCCCEEEECSSHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHHHHHHhCccC------CCCeEEEEECCHHHHHHHHHHH
Confidence 48899999999999998876 5699999999999999999999988764321 2358999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHh---hhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIV 647 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv 647 (2158)
.+++...++++..++|+.....+ ....++|+|+||+++........ ...+.++++|||||||++.+.. .+..++
T Consensus 82 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~-~~~l~~~~~vViDEaH~~~~~~--~~~~i~ 158 (696)
T 2ykg_A 82 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT-IPSLSIFTLMIFDECHNTSKQH--PYNMIM 158 (696)
T ss_dssp HHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTS-SCCGGGCSEEEEETGGGCSTTC--HHHHHH
T ss_pred HHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCc-ccccccccEEEEeCCCcccCcc--cHHHHH
Confidence 99988789999999998764432 23578999999999843333221 1257889999999999987543 355555
Q ss_pred HHHHHHH--hhccccccEEEEccccCC------hHHHHHHHhcc--ccCceEEecCC---------cccccc------ee
Q 000114 648 ARTVRQI--ETTKEHIRLVGLSATLPN------YEDVALFLRVN--LEKGLFYFDNS---------YRPVPL------SQ 702 (2158)
Q Consensus 648 ~r~~~~~--~~~~~~~riv~lSATlpn------~~dv~~~l~~~--~~~~~~~f~~~---------~rpv~l------~~ 702 (2158)
.+++... ......+++++||||+.+ .+.+...+... .....+..... ++|... .+
T Consensus 159 ~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~ 238 (696)
T 2ykg_A 159 FNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI 238 (696)
T ss_dssp HHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCS
T ss_pred HHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCccc
Confidence 4443321 112467899999999762 12222221110 00000000000 000000 00
Q ss_pred E-----------------------------------------------------EEeeccC-------------------
Q 000114 703 Q-----------------------------------------------------YIGIQVK------------------- 710 (2158)
Q Consensus 703 ~-----------------------------------------------------~~~~~~~------------------- 710 (2158)
. .......
T Consensus 239 ~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 318 (696)
T 2ykg_A 239 SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRK 318 (696)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHH
Confidence 0 0000000
Q ss_pred --------------------------------ChhH-HHH---------------------HhhHHHHHHHHHHh---CC
Q 000114 711 --------------------------------KPLQ-RFQ---------------------LMNDLCYEKVVAVA---GK 733 (2158)
Q Consensus 711 --------------------------------~~~~-~~~---------------------~l~~~~~~~i~~~~---~~ 733 (2158)
.... .+. .....+.+.+.+.. .+
T Consensus 319 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~ 398 (696)
T 2ykg_A 319 YNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE 398 (696)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTT
T ss_pred HhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCC
Confidence 0000 000 00011112222221 46
Q ss_pred CeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHH
Q 000114 734 HQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVE 813 (2158)
Q Consensus 734 ~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~ 813 (2158)
+++||||+++..+..++..|...+.... + ....+.+.|...+||+|+..+|..++
T Consensus 399 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~-~------------------------~~~~l~G~~~~~~h~~~~~~eR~~v~ 453 (696)
T 2ykg_A 399 TITILFVKTRALVDALKNWIEGNPKLSF-L------------------------KPGILTGRGKTNQNTGMTLPAQKCIL 453 (696)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHCTTCCS-C------------------------CEEC----------------------
T ss_pred CcEEEEeCcHHHHHHHHHHHHhCCCccc-c------------------------ceeEEEccCCCccccCCCHHHHHHHH
Confidence 7999999999999999999987541100 0 00011233455669999999999999
Q ss_pred HHHhC-CCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHH
Q 000114 814 DLFGD-GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (2158)
Q Consensus 814 ~~F~~-g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~ 892 (2158)
+.|++ |.++|||||+++++|||+|++++||+++.|.++ .+|+||+|| ||. ..|.++++++..+..
T Consensus 454 ~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~----------~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~ 519 (696)
T 2ykg_A 454 DAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV----------IKMIQTRGR-GRA---RGSKCFLLTSNAGVI 519 (696)
T ss_dssp -------CCSCSEEEESSCCC---CCCSEEEEESCC--C----------CCC-------------CCCEEEEEESCHHHH
T ss_pred HHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCH----------HHHHHhhcc-CcC---CCceEEEEecCCCHH
Confidence 99998 999999999999999999999999995555444 469999999 995 569999999887654
Q ss_pred H
Q 000114 893 Y 893 (2158)
Q Consensus 893 ~ 893 (2158)
.
T Consensus 520 ~ 520 (696)
T 2ykg_A 520 E 520 (696)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=376.43 Aligned_cols=346 Identities=19% Similarity=0.290 Sum_probs=197.7
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.|+..|+|+|.++++.++.+ .|+|+++|||||||++|++|+++.+...... .+.++|||+|+++|+.|+++.|
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~-~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~------~~~~~Lvl~Pt~~L~~Q~~~~~ 316 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAG------RKAKVVFLATKVPVYEQQKNVF 316 (797)
T ss_dssp ----CCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSS------CCCCEEEECSSHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhC-CCEEEEeCCCChHHHHHHHHHHHHHHhcccc------CCCeEEEEeCCHHHHHHHHHHH
Confidence 47889999999999999877 5699999999999999999999998765321 2458999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHh---hhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIV 647 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv 647 (2158)
.+++...++++..++|+.....+ ....++|+|+||+++....+.. ....+.++++|||||||++.+.. + +..++
T Consensus 317 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-~~~~~~~~~~iViDEaH~~~~~~-~-~~~i~ 393 (797)
T 4a2q_A 317 KHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG-TLTSLSIFTLMIFDECHNTTGNH-P-YNVLM 393 (797)
T ss_dssp HHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSS-SCCCGGGCSEEEETTGGGCSTTS-H-HHHHH
T ss_pred HHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhc-cccccccCCEEEEECccccCCCc-c-HHHHH
Confidence 99988889999999999865432 3457899999999984433332 12257889999999999987633 2 66666
Q ss_pred HHHHHHH-hhccccccEEEEccccCC--hH-------H---HHHHHhccccCceEEecCC---------cccccceeEEE
Q 000114 648 ARTVRQI-ETTKEHIRLVGLSATLPN--YE-------D---VALFLRVNLEKGLFYFDNS---------YRPVPLSQQYI 705 (2158)
Q Consensus 648 ~r~~~~~-~~~~~~~riv~lSATlpn--~~-------d---v~~~l~~~~~~~~~~f~~~---------~rpv~l~~~~~ 705 (2158)
.+..... ....+.+++++||||++. .. . +...++.. .+..... .+|.. .+.
T Consensus 394 ~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~----~i~~~~~~~~~l~~~~~~~~~---~~~ 466 (797)
T 4a2q_A 394 TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ----AISTVRENIQELQRFMNKPEI---DVR 466 (797)
T ss_dssp HHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS----EEECCCTTHHHHHHHSCCCCC---EEE
T ss_pred HHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCc----EEecccccHHHHHHhcCCCce---EEE
Confidence 5554322 222556899999999842 11 1 12222211 0100000 00100 000
Q ss_pred eecc-----------------------------------------------------------CCh-------------h
Q 000114 706 GIQV-----------------------------------------------------------KKP-------------L 713 (2158)
Q Consensus 706 ~~~~-----------------------------------------------------------~~~-------------~ 713 (2158)
.+.. ... .
T Consensus 467 ~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 546 (797)
T 4a2q_A 467 LVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICT 546 (797)
T ss_dssp ECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred ecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 0000 000 0
Q ss_pred HH-------------------HHHhh-------------------------------------------HHHHHHHHH--
Q 000114 714 QR-------------------FQLMN-------------------------------------------DLCYEKVVA-- 729 (2158)
Q Consensus 714 ~~-------------------~~~l~-------------------------------------------~~~~~~i~~-- 729 (2158)
.. ...+. ..+.+.+.+
T Consensus 547 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~ 626 (797)
T 4a2q_A 547 EHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAY 626 (797)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHh
Confidence 00 00000 001111111
Q ss_pred -HhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHH
Q 000114 730 -VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2158)
Q Consensus 730 -~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~ 808 (2158)
...++++||||++++.+..++..|........ + ....+...+...+||+|+..+
T Consensus 627 ~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~-----~--------------------~~~~l~G~~~~~~hg~~~~~e 681 (797)
T 4a2q_A 627 RYNPQTRTLLFAKTRALVSALKKCMEENPILNY-----I--------------------KPGVLMGRGRRDQTTGMTLPS 681 (797)
T ss_dssp HHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCS-----C--------------------CCEEC----------------
T ss_pred ccCCCCeEEEEECcHHHHHHHHHHHHhCccccc-----c--------------------cceEEEecCCcccCCCCCHHH
Confidence 13368999999999999999999875310000 0 001123455667799999999
Q ss_pred HHHHHHHHhC-CCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcC
Q 000114 809 RQLVEDLFGD-GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887 (2158)
Q Consensus 809 R~~v~~~F~~-g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~ 887 (2158)
|..+++.|++ |.++|||||+++++|||+|++++||+ ||++. ++..|+||+|| ||. ..|.++++++
T Consensus 682 R~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~----yd~p~------s~~~~iQr~GR-GR~---~~g~~i~l~~ 747 (797)
T 4a2q_A 682 QKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL----YEYSG------NVTKMIQVRGR-GRA---AGSKCILVTS 747 (797)
T ss_dssp ------------CCSEEEEECC-------CCCSEEEE----ESCCS------CHHHHHTC-----------CCCEEEEEC
T ss_pred HHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEE----eCCCC------CHHHHHHhcCC-CCC---CCceEEEEEe
Confidence 9999999999 99999999999999999999999999 77665 78899999999 996 5799999998
Q ss_pred CCcHH
Q 000114 888 HSELR 892 (2158)
Q Consensus 888 ~~~~~ 892 (2158)
..+..
T Consensus 748 ~~~~e 752 (797)
T 4a2q_A 748 KTEVV 752 (797)
T ss_dssp CHHHH
T ss_pred CCcHH
Confidence 86643
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-31 Score=355.90 Aligned_cols=347 Identities=18% Similarity=0.213 Sum_probs=212.4
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.|+|+|.++++.++.+ .++++++|||||||++|.+|+++.+.......+.++|||+|+++|+.|+++.|++.+.. .++
T Consensus 4 ~~~~~Q~~~i~~~~~~-~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~ 81 (555)
T 3tbk_A 4 KPRNYQLELALPAKKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER-LGY 81 (555)
T ss_dssp CCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT-TTC
T ss_pred CCcHHHHHHHHHHhCC-CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc-CCc
Confidence 6999999999999875 56999999999999999999999888743222348999999999999999999965544 488
Q ss_pred EEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHH-h
Q 000114 1421 RVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIA-S 1496 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~-~ 1496 (2158)
++..++|+..... .....++|+|+||+++..++.... ...+.++++|||||||++.+.. .+..++.+..... .
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~~vViDEah~~~~~~--~~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA-IPSLSVFTLMIFDECHNTSKNH--PYNQIMFRYLDHKLG 158 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSS-SCCGGGCSEEEETTGGGCSTTC--HHHHHHHHHHHHHTS
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCc-ccccccCCEEEEECccccCCcc--hHHHHHHHHHHhhhc
Confidence 9999999886542 234467999999999987776521 1257889999999999997543 3555553332221 1
Q ss_pred -hcCCCceEEEeccCCCCh---------H---HHHHHhccCCCceEecC-------C-CCcccccEEEEecccccchHH-
Q 000114 1497 -QVENKIRIVALSTSLANA---------K---DLGEWIGATSHGLFNFP-------P-GVRPVPLEIHIQGVDITNFEA- 1554 (2158)
Q Consensus 1497 -~~~~~~riV~lSATl~n~---------~---dl~~wl~~~~~~i~~f~-------~-~~rpv~l~~~i~~~~~~~~~~- 1554 (2158)
......++++||||+.+. . ++..+++... +.... . ..+|..............+..
T Consensus 159 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASV--IATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCI 236 (555)
T ss_dssp SCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSE--EECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHH
T ss_pred cccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCee--eeccccCHHHHHhhcCCCceEEEEecCcccChHHHH
Confidence 112468999999999652 1 2333443211 11000 0 011111111111000000000
Q ss_pred -------------------------------------HHHh---------------------------------------
Q 000114 1555 -------------------------------------RMQA--------------------------------------- 1558 (2158)
Q Consensus 1555 -------------------------------------~~~~--------------------------------------- 1558 (2158)
....
T Consensus 237 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 316 (555)
T 3tbk_A 237 ISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALII 316 (555)
T ss_dssp HHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0000
Q ss_pred ---------------------------------------------------cChHHHHHHH----HhH--hcCCCEEEEe
Q 000114 1559 ---------------------------------------------------MTKPTFTAIV----QHA--KNEKPALVFV 1581 (2158)
Q Consensus 1559 ---------------------------------------------------~~k~~~~~i~----~~~--~~~~~~IVFv 1581 (2158)
........+. ... .+++++||||
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~ 396 (555)
T 3tbk_A 317 SEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFV 396 (555)
T ss_dssp HHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred hhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEe
Confidence 0011111111 111 2458999999
Q ss_pred cChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHc-CCc
Q 000114 1582 PSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA-GKI 1660 (2158)
Q Consensus 1582 ~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~-g~i 1660 (2158)
+++..+..++..|............ ...+.+...+||+|+..+|..+++.|++ |.+
T Consensus 397 ~~~~~~~~l~~~L~~~~~~~~~~~~-----------------------~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~ 453 (555)
T 3tbk_A 397 KTRALVDALKKWIEENPALSFLKPG-----------------------ILTGRGRTNRATGMTLPAQKCVLEAFRASGDN 453 (555)
T ss_dssp SSHHHHHHHHHHHHHCGGGTTCCEE-----------------------ECCC--------------------------CC
T ss_pred CcHHHHHHHHHHHhhCcCcCceeee-----------------------EEEecCCcccccccCHHHHHHHHHHHhcCCCe
Confidence 9999999999888543111000000 0123456778999999999999999999 999
Q ss_pred eEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH
Q 000114 1661 KVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2158)
Q Consensus 1661 ~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~ 1731 (2158)
+|||||+++++|+|+|++.+|| +++.|.++.+|+||+|| ||. ..|.+++++.....+
T Consensus 454 ~vLvaT~~~~~GlDlp~v~~VI----------~~d~p~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~~~~ 510 (555)
T 3tbk_A 454 NILIATSVADEGIDIAECNLVI----------LYEYVGNVIKMIQTRGR-GRA---RDSKCFLLTSSADVI 510 (555)
T ss_dssp SEEEECCCTTCCEETTSCSEEE----------EESCCSSCCCEECSSCC-CTT---TSCEEEEEESCHHHH
T ss_pred eEEEEcchhhcCCccccCCEEE----------EeCCCCCHHHHHHhcCc-CcC---CCceEEEEEcCCCHH
Confidence 9999999999999999999999 55667789999999999 884 689999999876543
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-32 Score=371.69 Aligned_cols=337 Identities=20% Similarity=0.292 Sum_probs=214.3
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH-HHHHHhh
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV-VGNLSNR 573 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~-~~~~~~~ 573 (2158)
+|+++|.++++.++.+ .++|+++|||+|||++|++++++.+...... ..+.++|||+|+++|+.|+ ++.|.++
T Consensus 7 ~l~~~Q~~~i~~il~g-~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~-----~~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEG-KNIIICLPTGCGKTRVAVYIAKDHLDKKKKA-----SEPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp CCCHHHHHHHHHHHSS-CCEEECCCTTSCHHHHHHHHHHHHHHHHHHH-----TCCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CccHHHHHHHHHHHhC-CCEEEEcCCCCcHHHHHHHHHHHHHHhcccc-----CCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 7999999999999986 4599999999999999999999988764210 0124799999999999999 9999998
Q ss_pred cccCCcEEEEEeCCCccCH---hhhccccEEEcchhHHH-HHHhcc---CCCccccccceEEeecccccccCChhhHHHH
Q 000114 574 LQMYDVKVRELSGDQTLTR---QQIEETQIIVTTPEKWD-IITRKS---GDRTYTQLVKLLIIDEIHLLHDNRGPVLESI 646 (2158)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~---~~~~~~~IiV~TPekld-~l~r~~---~~~~~l~~v~lIIiDEaH~l~d~rg~~le~i 646 (2158)
+.. ++++..++|+..... .....++|+|+||+++. .+.+.+ .....+..+++|||||||++.. ++.+..+
T Consensus 81 ~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~--~~~~~~i 157 (699)
T 4gl2_A 81 LKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK--EAVYNNI 157 (699)
T ss_dssp HTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBT--TBSSCSH
T ss_pred cCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCc--cchHHHH
Confidence 765 588999999876553 23468999999999984 332211 1224578899999999998853 2222223
Q ss_pred HHHHHHH-Hhhcc---------ccccEEEEccccCCh---------HHHH---HHHhccccCceEEecCC------cccc
Q 000114 647 VARTVRQ-IETTK---------EHIRLVGLSATLPNY---------EDVA---LFLRVNLEKGLFYFDNS------YRPV 698 (2158)
Q Consensus 647 v~r~~~~-~~~~~---------~~~riv~lSATlpn~---------~dv~---~~l~~~~~~~~~~f~~~------~rpv 698 (2158)
+.+.+.. ..... +.+++++||||+++. +++. ..+... .+...... +.+.
T Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~---~i~~~~~~~~~l~~~~~~ 234 (699)
T 4gl2_A 158 MRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAF---TIKTVKENLDQLKNQIQE 234 (699)
T ss_dssp HHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCS---CCCCCCTTHHHHHHHSCC
T ss_pred HHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCC---EEEeecCchHHHhhhcCC
Confidence 3322221 11112 567999999998751 2222 233220 00000000 0001
Q ss_pred cceeEEEeeccCC--hh-HHH-----------------------------------------------------------
Q 000114 699 PLSQQYIGIQVKK--PL-QRF----------------------------------------------------------- 716 (2158)
Q Consensus 699 ~l~~~~~~~~~~~--~~-~~~----------------------------------------------------------- 716 (2158)
|.. .+..+.... .. ..+
T Consensus 235 p~~-~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 313 (699)
T 4gl2_A 235 PCK-KFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQI 313 (699)
T ss_dssp CEE-EEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHH
T ss_pred Cce-EEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 111 111000000 00 000
Q ss_pred ----------HHh--------------------------------h------------------------HHHHHHHHHH
Q 000114 717 ----------QLM--------------------------------N------------------------DLCYEKVVAV 730 (2158)
Q Consensus 717 ----------~~l--------------------------------~------------------------~~~~~~i~~~ 730 (2158)
..+ . ..+.+.+.+.
T Consensus 314 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~ 393 (699)
T 4gl2_A 314 NDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQ 393 (699)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Confidence 000 0 0001111111
Q ss_pred ---hC-CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCC---
Q 000114 731 ---AG-KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAG--- 803 (2158)
Q Consensus 731 ---~~-~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHag--- 803 (2158)
.+ ++++||||++++.++.++..|.... .+ . .....+..+||+
T Consensus 394 ~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~----~l---~------------------------~~g~~~~~lhg~~~~ 442 (699)
T 4gl2_A 394 YTRTEESARGIIFTKTRQSAYALSQWITENE----KF---A------------------------EVGVKAHHLIGAGHS 442 (699)
T ss_dssp HHHSSSCCCEEEECSCHHHHHHHHHHHHSSC----SC---C-----------------------------CEECCCSCCC
T ss_pred HhcCCCCCcEEEEECcHHHHHHHHHHHHhCc----cc---c------------------------ccCcceEEEECCCCc
Confidence 12 6899999999999999999987530 00 0 011345677888
Q ss_pred -----CCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCC
Q 000114 804 -----MTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDS 878 (2158)
Q Consensus 804 -----l~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~ 878 (2158)
|+..+|..+++.|++|.++|||||+++++|||+|++++||+ ||++. |+.+|+||+|||||.|
T Consensus 443 ~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~----~d~p~------s~~~~~Qr~GRArr~g--- 509 (699)
T 4gl2_A 443 SEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIR----YGLVT------NEIAMVQARGRARADE--- 509 (699)
T ss_dssp TTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEE----ESCCC------CHHHHHHHHTTSCSSS---
T ss_pred cCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEE----eCCCC------CHHHHHHHcCCCCCCC---
Confidence 99999999999999999999999999999999999999999 77665 7889999999998854
Q ss_pred ccEEEEEcCCC
Q 000114 879 YGEGIIITGHS 889 (2158)
Q Consensus 879 ~G~~iil~~~~ 889 (2158)
+.+++++...
T Consensus 510 -~~~~l~~~~~ 519 (699)
T 4gl2_A 510 -STYVLVAHSG 519 (699)
T ss_dssp -CEEEEEEESS
T ss_pred -ceEEEEEeCC
Confidence 4555555443
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-32 Score=364.91 Aligned_cols=316 Identities=20% Similarity=0.290 Sum_probs=217.1
Q ss_pred CCCCCCCHHHHHHHHHHHcC-----CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSS-----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE 565 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~-----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q 565 (2158)
.+| +||++|.++++.++.+ ..|+|++||||||||++|+++++..+..+ .+++|++||++||.|
T Consensus 365 lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g-----------~qvlvlaPtr~La~Q 432 (780)
T 1gm5_A 365 LPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG-----------FQTAFMVPTSILAIQ 432 (780)
T ss_dssp SSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-----------SCEEEECSCHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC-----------CeEEEEeCcHHHHHH
Confidence 467 8999999999998764 24799999999999999999999988643 379999999999999
Q ss_pred HHHHHHhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccC
Q 000114 566 VVGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN 638 (2158)
Q Consensus 566 ~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~ 638 (2158)
+++.+.+++...|++|..++|+.....+. ...++|+|+||+.+. . ...+.++++|||||+|+++..
T Consensus 433 ~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~---~----~~~~~~l~lVVIDEaHr~g~~ 505 (780)
T 1gm5_A 433 HYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQ---E----DVHFKNLGLVIIDEQHRFGVK 505 (780)
T ss_dssp HHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHH---H----CCCCSCCCEEEEESCCCC---
T ss_pred HHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh---h----hhhccCCceEEecccchhhHH
Confidence 99999999988899999999998755431 135899999999652 1 135778999999999997532
Q ss_pred ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCC-cccccceeEEEeeccCChhHHHH
Q 000114 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNS-YRPVPLSQQYIGIQVKKPLQRFQ 717 (2158)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~-~rpv~l~~~~~~~~~~~~~~~~~ 717 (2158)
... .+......+++++||||+.. ..++........ ....+.. ....++...+ ..... .
T Consensus 506 qr~-----------~l~~~~~~~~vL~mSATp~p-~tl~~~~~g~~~--~s~i~~~p~~r~~i~~~~--~~~~~----~- 564 (780)
T 1gm5_A 506 QRE-----------ALMNKGKMVDTLVMSATPIP-RSMALAFYGDLD--VTVIDEMPPGRKEVQTML--VPMDR----V- 564 (780)
T ss_dssp --C-----------CCCSSSSCCCEEEEESSCCC-HHHHHHHTCCSS--CEEECCCCSSCCCCEECC--CCSST----H-
T ss_pred HHH-----------HHHHhCCCCCEEEEeCCCCH-HHHHHHHhCCcc--eeeeeccCCCCcceEEEE--eccch----H-
Confidence 110 11123457899999999643 444433322211 1111110 0011222111 11111 1
Q ss_pred HhhHHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhh-h-cc
Q 000114 718 LMNDLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKD-L-LP 794 (2158)
Q Consensus 718 ~l~~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-l-l~ 794 (2158)
..+++.+.+.. .+++++|||++..+.+.+... ..+.+. ..|.. . ..
T Consensus 565 ---~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~--------------------~a~~l~--------~~L~~~~~~~ 613 (780)
T 1gm5_A 565 ---NEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVK--------------------SAVEMY--------EYLSKEVFPE 613 (780)
T ss_dssp ---HHHHHHHHHHTTTSCCBCCBCCCC--------C--------------------HHHHHH--------HSGGGSCC--
T ss_pred ---HHHHHHHHHHHhcCCcEEEEecchhhhhhhhHH--------------------HHHHHH--------HHHHhhhcCC
Confidence 12233344333 477999999988765322000 000000 01111 1 13
Q ss_pred CCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCC
Q 000114 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (2158)
Q Consensus 795 ~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (2158)
.+++.+||+|+..+|..+++.|++|+++|||||+++++|||+|++++||+ |+++. .+...|.||+|||||.
T Consensus 614 ~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi----~d~~r-----~~l~~l~Qr~GRaGR~ 684 (780)
T 1gm5_A 614 FKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI----ENPER-----FGLAQLHQLRGRVGRG 684 (780)
T ss_dssp -CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB----CSCSS-----SCTTHHHHHHHTSCCS
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEE----eCCCC-----CCHHHHHHHhcccCcC
Confidence 57889999999999999999999999999999999999999999999998 66653 2567899999999998
Q ss_pred CCCCccEEEEEcCC
Q 000114 875 QYDSYGEGIIITGH 888 (2158)
Q Consensus 875 g~d~~G~~iil~~~ 888 (2158)
| ..|.|++++++
T Consensus 685 g--~~g~~ill~~~ 696 (780)
T 1gm5_A 685 G--QEAYCFLVVGD 696 (780)
T ss_dssp S--TTCEEECCCCS
T ss_pred C--CCCEEEEEECC
Confidence 7 66999999874
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=360.34 Aligned_cols=347 Identities=19% Similarity=0.248 Sum_probs=195.8
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
|+..|+|+|.++++.++.+ .|+++++|||||||++|.+|++..+.......+.++|||+|+++|+.|+++.|++.+..
T Consensus 245 g~~~l~~~Q~~~i~~~l~~-~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~- 322 (797)
T 4a2q_A 245 ETKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER- 322 (797)
T ss_dssp ---CCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG-
T ss_pred CCCCCCHHHHHHHHHHHhC-CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc-
Confidence 4789999999999999875 56999999999999999999999988743221338999999999999999999966554
Q ss_pred CCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccc-cccceeEEEecccccccCCCCChHHHHHHHHHH
Q 000114 1418 LGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRK-YVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~-~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~ 1493 (2158)
.++++..++|+..... .....++|+|+||+++...++. ... .+.++++|||||||++.+.. .+..++.++..
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~--~~~~~~~~~~~iViDEaH~~~~~~--~~~~i~~~~~~ 398 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTGNH--PYNVLMTRYLE 398 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHS--SSCCCGGGCSEEEETTGGGCSTTS--HHHHHHHHHHH
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHh--ccccccccCCEEEEECccccCCCc--cHHHHHHHHHH
Confidence 3789999999885542 3445779999999999877764 222 57889999999999987543 35555544332
Q ss_pred HH-hhcCCCceEEEeccCCCC--h----------HHHHHHhccCCCceEecCCC--------CcccccEEEEec------
Q 000114 1494 IA-SQVENKIRIVALSTSLAN--A----------KDLGEWIGATSHGLFNFPPG--------VRPVPLEIHIQG------ 1546 (2158)
Q Consensus 1494 i~-~~~~~~~riV~lSATl~n--~----------~dl~~wl~~~~~~i~~f~~~--------~rpv~l~~~i~~------ 1546 (2158)
.. .......++++||||+.. . ..+...++... +...... .+|......+..
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~--i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 476 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQA--ISTVRENIQELQRFMNKPEIDVRLVKRRIHNPF 476 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSE--EECCCTTHHHHHHHSCCCCCEEEECCCCSCCHH
T ss_pred HhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcE--EecccccHHHHHHhcCCCceEEEecCCCCCcHH
Confidence 21 112456899999999953 1 12223333211 0000000 011111111110
Q ss_pred -------------------------------ccccc---hHHH-----------------------------H-------
Q 000114 1547 -------------------------------VDITN---FEAR-----------------------------M------- 1556 (2158)
Q Consensus 1547 -------------------------------~~~~~---~~~~-----------------------------~------- 1556 (2158)
+.... +... +
T Consensus 477 ~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 556 (797)
T 4a2q_A 477 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 556 (797)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0000 0
Q ss_pred ---------------Hh------------------------------------cChHHHHHHH----HhH--hcCCCEEE
Q 000114 1557 ---------------QA------------------------------------MTKPTFTAIV----QHA--KNEKPALV 1579 (2158)
Q Consensus 1557 ---------------~~------------------------------------~~k~~~~~i~----~~~--~~~~~~IV 1579 (2158)
.. ...+....+. ... .++.++||
T Consensus 557 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLI 636 (797)
T 4a2q_A 557 IISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLL 636 (797)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEE
T ss_pred hhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEE
Confidence 00 0001111111 111 45688999
Q ss_pred EecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHc-C
Q 000114 1580 FVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA-G 1658 (2158)
Q Consensus 1580 Fv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~-g 1658 (2158)
||++++.+..++..|............ ...+.+...+||+|+..+|..+++.|++ |
T Consensus 637 F~~~~~~~~~L~~~L~~~~~~~~~~~~-----------------------~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g 693 (797)
T 4a2q_A 637 FAKTRALVSALKKCMEENPILNYIKPG-----------------------VLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693 (797)
T ss_dssp EESSHHHHHHHHHHHHTCSTTCSCCCE-----------------------EC----------------------------
T ss_pred EECcHHHHHHHHHHHHhCcccccccce-----------------------EEEecCCcccCCCCCHHHHHHHHHHhhccC
Confidence 999999999999877542111110000 1134566788999999999999999999 9
Q ss_pred CceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCCh
Q 000114 1659 KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1659 ~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~ 1729 (2158)
.++|||||+++++|||+|++.+|| +++.|.++..|+||+|| ||. ..|.|++++....
T Consensus 694 ~~~vLVaT~~~~~GIDlp~v~~VI----------~yd~p~s~~~~iQr~GR-GR~---~~g~~i~l~~~~~ 750 (797)
T 4a2q_A 694 DNRLLIATSVADEGIDIVQCNLVV----------LYEYSGNVTKMIQVRGR-GRA---AGSKCILVTSKTE 750 (797)
T ss_dssp CCSEEEEECC-------CCCSEEE----------EESCCSCHHHHHTC-----------CCCEEEEECCHH
T ss_pred CceEEEEcCchhcCCCchhCCEEE----------EeCCCCCHHHHHHhcCC-CCC---CCceEEEEEeCCc
Confidence 999999999999999999999999 56677899999999999 995 6899999987764
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-31 Score=359.80 Aligned_cols=350 Identities=17% Similarity=0.189 Sum_probs=196.6
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
||..|+|+|.++++.++.+ .|+|+++|||||||++|.++++..+.....+.+.++|||+|+++|+.|+++.+++.+ ..
T Consensus 10 g~~~lr~~Q~~~i~~~l~g-~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~-~~ 87 (696)
T 2ykg_A 10 SPFKPRNYQLELALPAMKG-KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYF-ER 87 (696)
T ss_dssp C--CCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHT-TT
T ss_pred CCCCccHHHHHHHHHHHcC-CCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHh-cc
Confidence 6889999999999999874 569999999999999999999988876322212389999999999999999999554 44
Q ss_pred CCcEEEEEcCCcchh---hhcccCCcEEEeCHHHHHHHHhhhhccc-cccceeEEEecccccccCCCCChHHHHHHHHHH
Q 000114 1418 LGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRK-YVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~-~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~ 1493 (2158)
.++++..++|+.... ......++|+|+||+++...+.. ... .+.++++|||||||++.+.. .+..++.++..
T Consensus 88 ~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~--~~~~~l~~~~~vViDEaH~~~~~~--~~~~i~~~~l~ 163 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--GTIPSLSIFTLMIFDECHNTSKQH--PYNMIMFNYLD 163 (696)
T ss_dssp TTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHT--TSSCCGGGCSEEEEETGGGCSTTC--HHHHHHHHHHH
T ss_pred CCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhc--CcccccccccEEEEeCCCcccCcc--cHHHHHHHHHH
Confidence 588999999987543 22335679999999999877664 222 47889999999999997443 45555543322
Q ss_pred H--HhhcCCCceEEEeccCCCC---------hHHHHHHhccCCCceEecCCCC---------cccccEEEEecccc----
Q 000114 1494 I--ASQVENKIRIVALSTSLAN---------AKDLGEWIGATSHGLFNFPPGV---------RPVPLEIHIQGVDI---- 1549 (2158)
Q Consensus 1494 i--~~~~~~~~riV~lSATl~n---------~~dl~~wl~~~~~~i~~f~~~~---------rpv~l~~~i~~~~~---- 1549 (2158)
. ........++++||||+.+ ...+...+.......+...... +|............
T Consensus 164 ~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs 243 (696)
T 2ykg_A 164 QKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFK 243 (696)
T ss_dssp HHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHH
T ss_pred HhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHH
Confidence 1 1222457899999999863 1222222211111111100000 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 000114 1550 -------------------------------------------------------------------------------- 1549 (2158)
Q Consensus 1550 -------------------------------------------------------------------------------- 1549 (2158)
T Consensus 244 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 323 (696)
T 2ykg_A 244 YIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDAL 323 (696)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHH
Confidence
Q ss_pred ---------------------------cchHHHHHh-----------------cChHHHHHHHHhH------hcCCCEEE
Q 000114 1550 ---------------------------TNFEARMQA-----------------MTKPTFTAIVQHA------KNEKPALV 1579 (2158)
Q Consensus 1550 ---------------------------~~~~~~~~~-----------------~~k~~~~~i~~~~------~~~~~~IV 1579 (2158)
......+.. ........+...+ .+++++||
T Consensus 324 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~II 403 (696)
T 2ykg_A 324 IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 403 (696)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred hccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEE
Confidence 000000000 0111112222111 25678999
Q ss_pred EecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHc-C
Q 000114 1580 FVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA-G 1658 (2158)
Q Consensus 1580 Fv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~-g 1658 (2158)
||+++..|+.++..|............ ...+.|...+||+|+..+|..+++.|++ |
T Consensus 404 F~~~~~~~~~l~~~L~~~~~~~~~~~~-----------------------~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g 460 (696)
T 2ykg_A 404 FVKTRALVDALKNWIEGNPKLSFLKPG-----------------------ILTGRGKTNQNTGMTLPAQKCILDAFKASG 460 (696)
T ss_dssp ECSCHHHHHHHHHHHHHCTTCCSCCEE-----------------------C-----------------------------
T ss_pred EeCcHHHHHHHHHHHHhCCCcccccee-----------------------EEEccCCCccccCCCHHHHHHHHHHHHhcC
Confidence 999999999999888542110000000 0122344555889999999999999998 9
Q ss_pred CceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChH
Q 000114 1659 KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK 1730 (2158)
Q Consensus 1659 ~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~ 1730 (2158)
.++|||||+++++|||+|++.+|| +++.|.+..+|+||+|| ||. ..|.|++++...+.
T Consensus 461 ~~~vLVaT~v~~~GiDip~v~~VI----------~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~ 518 (696)
T 2ykg_A 461 DHNILIATSVADEGIDIAQCNLVI----------LYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGV 518 (696)
T ss_dssp CCSCSEEEESSCCC---CCCSEEE----------EESCC--CCCC-------------CCCEEEEEESCHHH
T ss_pred CccEEEEechhhcCCcCccCCEEE----------EeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCH
Confidence 999999999999999999999999 55667788999999999 995 67999999887654
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=340.69 Aligned_cols=327 Identities=20% Similarity=0.306 Sum_probs=225.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.|+|+|.++++.++.+ ++++++|||+|||++++++++..+.. .+.++||++|+++|+.|+.+.+.+.+
T Consensus 9 ~l~~~Q~~~i~~~~~~--~~ll~~~tG~GKT~~~~~~~~~~~~~----------~~~~~liv~P~~~L~~q~~~~~~~~~ 76 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET--NCLIVLPTGLGKTLIAMMIAEYRLTK----------YGGKVLMLAPTKPLVLQHAESFRRLF 76 (494)
T ss_dssp CCCHHHHHHHHHGGGS--CEEEECCTTSCHHHHHHHHHHHHHHH----------SCSCEEEECSSHHHHHHHHHHHHHHB
T ss_pred CccHHHHHHHHHHhhC--CEEEEcCCCCCHHHHHHHHHHHHHhc----------CCCeEEEEECCHHHHHHHHHHHHHHh
Confidence 7999999999999887 79999999999999999999988762 13479999999999999999999987
Q ss_pred ccCCcEEEEEeCCCccCHhh--hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHH
Q 000114 575 QMYDVKVRELSGDQTLTRQQ--IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~--~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~ 652 (2158)
+..+.++..++|+....... ...++|+|+||+.+....... ...+.++++||+||||.+.+.. ....+...+
T Consensus 77 ~~~~~~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~--~~~~~~~~~vIiDEaH~~~~~~--~~~~~~~~~-- 150 (494)
T 1wp9_A 77 NLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAG--RISLEDVSLIVFDEAHRAVGNY--AYVFIAREY-- 150 (494)
T ss_dssp CSCGGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTT--SCCTTSCSEEEEETGGGCSTTC--HHHHHHHHH--
T ss_pred CcchhheEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcC--CcchhhceEEEEECCcccCCCC--cHHHHHHHH--
Confidence 54455899999987654422 457899999999984333322 2356789999999999987532 222333322
Q ss_pred HHhhccccccEEEEccccCC-hHHHHHHHhccccCceEEecCCccc----c--cceeEEEeeccCChhHHH---------
Q 000114 653 QIETTKEHIRLVGLSATLPN-YEDVALFLRVNLEKGLFYFDNSYRP----V--PLSQQYIGIQVKKPLQRF--------- 716 (2158)
Q Consensus 653 ~~~~~~~~~riv~lSATlpn-~~dv~~~l~~~~~~~~~~f~~~~rp----v--~l~~~~~~~~~~~~~~~~--------- 716 (2158)
.......++++||||+++ .+++..++..-..... .+.....+ . +....+...........+
T Consensus 151 --~~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (494)
T 1wp9_A 151 --KRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHI-EYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLR 227 (494)
T ss_dssp --HHHCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEE-EECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred --HhcCCCCeEEEEecCCCCCcHHHHHHHHhcChhee-eccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHH
Confidence 223567899999999874 3444444432211111 11111110 0 000011100000000000
Q ss_pred -----------------------------------------------------------------------HH-------
Q 000114 717 -----------------------------------------------------------------------QL------- 718 (2158)
Q Consensus 717 -----------------------------------------------------------------------~~------- 718 (2158)
..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 307 (494)
T 1wp9_A 228 DALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEE 307 (494)
T ss_dssp HHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Confidence 00
Q ss_pred ------------------------------------hhHHHHHHHHHH---hCCCeEEEEecChHHHHHHHHHHHHHhhc
Q 000114 719 ------------------------------------MNDLCYEKVVAV---AGKHQVLIFVHSRKETAKTARAIRDTALE 759 (2158)
Q Consensus 719 ------------------------------------l~~~~~~~i~~~---~~~~~vLVFv~sr~~~~~~a~~L~~~~~~ 759 (2158)
-...+.+.+.+. ..++++||||+++..+..++..|...+.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~- 386 (494)
T 1wp9_A 308 AKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI- 386 (494)
T ss_dssp HHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTC-
T ss_pred hccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCC-
Confidence 000111222222 3478999999999999999999887532
Q ss_pred ccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecC--------CCCHHHHHHHHHHHhCCCceEEEechhhh
Q 000114 760 NDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHA--------GMTRGDRQLVEDLFGDGHVQVLVSTATLA 831 (2158)
Q Consensus 760 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHa--------gl~~~~R~~v~~~F~~g~i~VLVaT~tla 831 (2158)
.+..+|| +|+..+|..+++.|++|.++|||||++++
T Consensus 387 ------------------------------------~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~ 430 (494)
T 1wp9_A 387 ------------------------------------KAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGE 430 (494)
T ss_dssp ------------------------------------CEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGG
T ss_pred ------------------------------------CcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccc
Confidence 3455566 99999999999999999999999999999
Q ss_pred hccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHH
Q 000114 832 WGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (2158)
Q Consensus 832 ~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~ 892 (2158)
+|+|+|++++||+ |+++. ++..|+||+|||||.| . |.+++++.....+
T Consensus 431 ~Gldl~~~~~Vi~----~d~~~------~~~~~~Qr~GR~~R~g--~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 431 EGLDVPEVDLVVF----YEPVP------SAIRSIQRRGRTGRHM--P-GRVIILMAKGTRD 478 (494)
T ss_dssp GGGGSTTCCEEEE----SSCCH------HHHHHHHHHTTSCSCC--C-SEEEEEEETTSHH
T ss_pred cCCCchhCCEEEE----eCCCC------CHHHHHHHHhhccCCC--C-ceEEEEEecCCHH
Confidence 9999999999999 55543 6778999999999987 3 9999998876543
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.3e-31 Score=364.71 Aligned_cols=348 Identities=19% Similarity=0.290 Sum_probs=197.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.|+.+|+++|.++++.++.+ .++++++|||+|||++|++++++.+..... ..+.++|||+|+++|+.|+++.|
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g-~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~------~~~~~vLvl~Pt~~L~~Q~~~~~ 316 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPA------GRKAKVVFLATKVPVYEQQKNVF 316 (936)
T ss_dssp ----CCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHTTTTTCCS------SCCCCEEEECSSHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcC-CCEEEEeCCCchHHHHHHHHHHHHHHhccc------cCCCeEEEEeCCHHHHHHHHHHH
Confidence 46789999999999999876 569999999999999999999988765421 12458999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCH---hhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTR---QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIV 647 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~---~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv 647 (2158)
.+++...++++..++|+..... .....++|+|+||+++....+.. ....+.++++|||||||++.... + +..++
T Consensus 317 ~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~-~~~~l~~~~liViDEaH~~~~~~-~-~~~i~ 393 (936)
T 4a2w_A 317 KHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG-TLTSLSIFTLMIFDECHNTTGNH-P-YNVLM 393 (936)
T ss_dssp HHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSS-SCCCGGGCSEEEEETGGGCSTTC-H-HHHHH
T ss_pred HHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcC-ccccccCCCEEEEECccccCCCc-c-HHHHH
Confidence 9998888999999999985443 23457899999999984443332 12257889999999999987543 2 66666
Q ss_pred HHHHHHH-hhccccccEEEEccccCC--hHH----------HHHHHhccccCceEEecCC-------cccccceeEEEee
Q 000114 648 ARTVRQI-ETTKEHIRLVGLSATLPN--YED----------VALFLRVNLEKGLFYFDNS-------YRPVPLSQQYIGI 707 (2158)
Q Consensus 648 ~r~~~~~-~~~~~~~riv~lSATlpn--~~d----------v~~~l~~~~~~~~~~f~~~-------~rpv~l~~~~~~~ 707 (2158)
.++.... ....+..++++||||++. ..+ +...+... .+..... +.+.+.. .+..+
T Consensus 394 ~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~----~i~~~~~~~~~l~~~~~~p~~-~~~~~ 468 (936)
T 4a2w_A 394 TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ----AISTVRENIQELQRFMNKPEI-DVRLV 468 (936)
T ss_dssp HHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS----EEECCCSSHHHHHHHSCCCCE-EEEEC
T ss_pred HHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCc----eeecccccHHHHHHhccCCcc-eEEec
Confidence 5554322 222556899999999842 111 11222210 0110000 0000000 00000
Q ss_pred cc-----------------------------------------------------------CCh-------------hH-
Q 000114 708 QV-----------------------------------------------------------KKP-------------LQ- 714 (2158)
Q Consensus 708 ~~-----------------------------------------------------------~~~-------------~~- 714 (2158)
.. ... ..
T Consensus 469 ~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~ 548 (936)
T 4a2w_A 469 KRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEH 548 (936)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 00 000 00
Q ss_pred ------------------HHHHhh-------------------------------------------HHHHHHHHHH---
Q 000114 715 ------------------RFQLMN-------------------------------------------DLCYEKVVAV--- 730 (2158)
Q Consensus 715 ------------------~~~~l~-------------------------------------------~~~~~~i~~~--- 730 (2158)
....+. ..+.+.+.+.
T Consensus 549 l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~ 628 (936)
T 4a2w_A 549 LRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRY 628 (936)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhcc
Confidence 000000 0011111121
Q ss_pred hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHH
Q 000114 731 AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810 (2158)
Q Consensus 731 ~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~ 810 (2158)
..++++||||++++.+..++..|.....-.. + ....+.+.+...+||+|+..+|.
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~-i------------------------k~~~l~G~~~~~~hg~m~~~eR~ 683 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNY-I------------------------KPGVLMGRGRRDQTTGMTLPSQK 683 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTTSS-C------------------------CCEEC------------------
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCccccc-c------------------------ceeEEecCCCcccCCCCCHHHHH
Confidence 2357999999999999999999987410000 0 00112334566779999999999
Q ss_pred HHHHHHhC-CCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCC
Q 000114 811 LVEDLFGD-GHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2158)
Q Consensus 811 ~v~~~F~~-g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2158)
.+++.|++ |.++|||||+++++|||+|++++||+ ||++. |+..|+||+|| ||. ..|.++++++..
T Consensus 684 ~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~----yD~p~------s~~~~iQr~GR-GR~---~~g~vi~Li~~~ 749 (936)
T 4a2w_A 684 GVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL----YEYSG------NVTKMIQVRGR-GRA---AGSKCILVTSKT 749 (936)
T ss_dssp ----------CCSEEEEECC------CCCCSEEEE----ESCCS------CSHHHHCC-----------CCCEEEEESCH
T ss_pred HHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE----eCCCC------CHHHHHHhcCC-CCC---CCCEEEEEEeCC
Confidence 99999999 99999999999999999999999999 56554 67789999999 996 568999998876
Q ss_pred cHH
Q 000114 890 ELR 892 (2158)
Q Consensus 890 ~~~ 892 (2158)
+..
T Consensus 750 t~e 752 (936)
T 4a2w_A 750 EVV 752 (936)
T ss_dssp HHH
T ss_pred CHH
Confidence 543
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-31 Score=357.39 Aligned_cols=317 Identities=19% Similarity=0.279 Sum_probs=218.5
Q ss_pred CCCCCCHHHHHHHHHHhcC-----CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHH
Q 000114 1338 GFKHFNPIQTQVFTVLYNT-----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~-----~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~ 1412 (2158)
+| .|+++|.++++.++.+ ..|++++||||||||++|++|++..+.. +. +++|++||++|+.|+++.+++
T Consensus 366 pf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~--qvlvlaPtr~La~Q~~~~l~~ 439 (780)
T 1gm5_A 366 PF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GF--QTAFMVPTSILAIQHYRRTVE 439 (780)
T ss_dssp SS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TS--CEEEECSCHHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CC--eEEEEeCcHHHHHHHHHHHHH
Confidence 47 8999999999998763 2479999999999999999999988865 34 899999999999999999997
Q ss_pred HhcCCCCcEEEEEcCCcchhhh-----ccc--CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHH
Q 000114 1413 KFGQGLGMRVVELTGETAMDLK-----LLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLE 1485 (2158)
Q Consensus 1413 ~f~~~~g~~v~~ltG~~~~~~~-----~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e 1485 (2158)
.+.. .|+++..++|+.+...+ .+. .++|+|+||+.+.. ...+.+++++|+||+|+++...
T Consensus 440 ~~~~-~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-------~~~~~~l~lVVIDEaHr~g~~q----- 506 (780)
T 1gm5_A 440 SFSK-FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-------DVHFKNLGLVIIDEQHRFGVKQ----- 506 (780)
T ss_dssp HHTC-SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-------CCCCSCCCEEEEESCCCC---------
T ss_pred Hhhh-cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-------hhhccCCceEEecccchhhHHH-----
Confidence 7654 48899999999875432 122 46999999987632 3457899999999999985321
Q ss_pred HHHHHHHHHHhhcCCCceEEEeccCCCChHHHH-HHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHH
Q 000114 1486 VIVSRMRYIASQVENKIRIVALSTSLANAKDLG-EWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTF 1564 (2158)
Q Consensus 1486 ~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~-~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~ 1564 (2158)
+ ..........++++||||+... .++ .+.+.....+....|..+. ++...+.. ... ....+
T Consensus 507 ----r--~~l~~~~~~~~vL~mSATp~p~-tl~~~~~g~~~~s~i~~~p~~r~-~i~~~~~~--~~~--------~~~l~ 568 (780)
T 1gm5_A 507 ----R--EALMNKGKMVDTLVMSATPIPR-SMALAFYGDLDVTVIDEMPPGRK-EVQTMLVP--MDR--------VNEVY 568 (780)
T ss_dssp -------CCCCSSSSCCCEEEEESSCCCH-HHHHHHTCCSSCEEECCCCSSCC-CCEECCCC--SST--------HHHHH
T ss_pred ----H--HHHHHhCCCCCEEEEeCCCCHH-HHHHHHhCCcceeeeeccCCCCc-ceEEEEec--cch--------HHHHH
Confidence 1 0111223468999999997543 333 3334333333332232221 22222211 111 12234
Q ss_pred HHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHH-H-hcccEEEecCC
Q 000114 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKA-T-LRHGVGYLHEG 1642 (2158)
Q Consensus 1565 ~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~-~-l~~gv~~~H~~ 1642 (2158)
..+...+..+++++|||++.+.++.+.. .......+. |.. . .+.+|+.+||+
T Consensus 569 ~~i~~~l~~g~qvlVf~~~ie~se~l~~---------------------~~a~~l~~~-----L~~~~~~~~~v~~lHG~ 622 (780)
T 1gm5_A 569 EFVRQEVMRGGQAFIVYPLIEESDKLNV---------------------KSAVEMYEY-----LSKEVFPEFKLGLMHGR 622 (780)
T ss_dssp HHHHHHTTTSCCBCCBCCCC-----------------------------CHHHHHHHS-----GGGSCC---CBCCCCSS
T ss_pred HHHHHHHhcCCcEEEEecchhhhhhhhH---------------------HHHHHHHHH-----HHhhhcCCCcEEEEeCC
Confidence 4555555778999999998765432100 000001111 111 1 13568999999
Q ss_pred CCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcC-CCHHHHHHhhccCCCCCCCCceEE
Q 000114 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD-YPVTDLLQMMGHASRPLLDNSGKC 1721 (2158)
Q Consensus 1643 l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~-~s~~~~lQr~GRaGR~g~d~~G~~ 1721 (2158)
|+..+|..+++.|++|+++|||||+++++|+|+|++.+|| +.+.| ++...|.||+|||||.| ..|.|
T Consensus 623 m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VI----------i~d~~r~~l~~l~Qr~GRaGR~g--~~g~~ 690 (780)
T 1gm5_A 623 LSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMV----------IENPERFGLAQLHQLRGRVGRGG--QEAYC 690 (780)
T ss_dssp SCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEE----------BCSCSSSCTTHHHHHHHTSCCSS--TTCEE
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEE----------EeCCCCCCHHHHHHHhcccCcCC--CCCEE
Confidence 9999999999999999999999999999999999999888 23333 36788999999999986 78999
Q ss_pred EEEecCCh
Q 000114 1722 VILCHAPR 1729 (2158)
Q Consensus 1722 iil~~~~~ 1729 (2158)
++++.+..
T Consensus 691 ill~~~~~ 698 (780)
T 1gm5_A 691 FLVVGDVG 698 (780)
T ss_dssp ECCCCSCC
T ss_pred EEEECCCC
Confidence 99987433
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-31 Score=376.51 Aligned_cols=280 Identities=15% Similarity=0.178 Sum_probs=197.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.||. | ++|.++++.++.+ .|++++||||||||+ |.+|++..+... +.++||++||++||.|+++.+
T Consensus 54 ~g~~-p-~iQ~~ai~~il~g-~dvlv~apTGSGKTl-~~lp~l~~~~~~----------~~~~lil~PtreLa~Q~~~~l 119 (1054)
T 1gku_B 54 VGEP-R-AIQKMWAKRILRK-ESFAATAPTGVGKTS-FGLAMSLFLALK----------GKRCYVIFPTSLLVIQAAETI 119 (1054)
T ss_dssp TCSC-C-HHHHHHHHHHHTT-CCEECCCCBTSCSHH-HHHHHHHHHHTT----------SCCEEEEESCHHHHHHHHHHH
T ss_pred cCCC-H-HHHHHHHHHHHhC-CCEEEEcCCCCCHHH-HHHHHHHHHhhc----------CCeEEEEeccHHHHHHHHHHH
Confidence 4898 9 9999999999976 569999999999998 888888776542 358999999999999999999
Q ss_pred HhhcccCCc----EEEEEeCCCccCHh-----hhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChh
Q 000114 571 SNRLQMYDV----KVRELSGDQTLTRQ-----QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGP 641 (2158)
Q Consensus 571 ~~~~~~~gi----~v~~l~Gd~~~~~~-----~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~ 641 (2158)
++++...++ +++.++|+.....+ ....++|+|+||+++..+.++ ++++++|||||||++.+ +|.
T Consensus 120 ~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~------L~~l~~lViDEah~~l~-~~~ 192 (1054)
T 1gku_B 120 RKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE------LGHFDFIFVDDVDAILK-ASK 192 (1054)
T ss_dssp HHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT------SCCCSEEEESCHHHHHT-STH
T ss_pred HHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH------hccCCEEEEeChhhhhh-ccc
Confidence 999888888 89999999877552 233499999999987443332 55899999999999987 788
Q ss_pred hHHHHHHHHHHH----HhhccccccEEEEccccCChHHHHHHHhccccCceEEecC-CcccccceeEEEeeccCChhHHH
Q 000114 642 VLESIVARTVRQ----IETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDN-SYRPVPLSQQYIGIQVKKPLQRF 716 (2158)
Q Consensus 642 ~le~iv~r~~~~----~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~-~~rpv~l~~~~~~~~~~~~~~~~ 716 (2158)
.++.++.++... ........+++++|||+++..++...+...+.. +.... ......+.+.++ ...+ .
T Consensus 193 ~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~--i~v~~~~~~~~~i~~~~~--~~~k----~ 264 (1054)
T 1gku_B 193 NVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN--FDIGSSRITVRNVEDVAV--NDES----I 264 (1054)
T ss_dssp HHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC--CCCSCCEECCCCEEEEEE--SCCC----T
T ss_pred cHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceE--EEccCcccCcCCceEEEe--chhH----H
Confidence 888877655210 011245678999999998754333322211110 01111 111122333333 1111 1
Q ss_pred HHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCC
Q 000114 717 QLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYG 796 (2158)
Q Consensus 717 ~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~g 796 (2158)
..+.. +.... ++++||||+|++.|+.++..|... ..
T Consensus 265 ~~L~~-----ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~--------------------------------------~~ 300 (1054)
T 1gku_B 265 STLSS-----ILEKL-GTGGIIYARTGEEAEEIYESLKNK--------------------------------------FR 300 (1054)
T ss_dssp TTTHH-----HHTTS-CSCEEEEESSHHHHHHHHHTTTTS--------------------------------------SC
T ss_pred HHHHH-----HHhhc-CCCEEEEEcCHHHHHHHHHHHhhc--------------------------------------cC
Confidence 11111 11111 578999999999999988776431 24
Q ss_pred eEEecCCCCHHHHHHHHHHHhCCCceEEEe----chhhhhccCCCce-EEEEecccc
Q 000114 797 FAIHHAGMTRGDRQLVEDLFGDGHVQVLVS----TATLAWGVNLPAH-TVIIKGTQI 848 (2158)
Q Consensus 797 v~~hHagl~~~~R~~v~~~F~~g~i~VLVa----T~tla~GVdlP~v-~vVI~~~~~ 848 (2158)
++.+||+| ..+++.|++|.++|||| |+++++|||+|+| ++||+++.|
T Consensus 301 v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 301 IGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp EEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred eeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 77889998 37889999999999999 9999999999995 999995555
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=365.96 Aligned_cols=279 Identities=17% Similarity=0.158 Sum_probs=193.8
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.|| +|+++|.++++.++.+. +++++||||||||++|+++++..+.. +.++||++||++||.|+++.+
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~-dvlv~ApTGSGKTl~~l~~il~~~~~-----------~~~~Lil~PtreLa~Q~~~~l 141 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGK-SFTMVAPTGVGKTTFGMMTALWLARK-----------GKKSALVFPTVTLVKQTLERL 141 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTC-CEEECCSTTCCHHHHHHHHHHHHHTT-----------TCCEEEEESSHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHHHHcCC-CEEEEeCCCCcHHHHHHHHHHHHHhc-----------CCeEEEEechHHHHHHHHHHH
Confidence 367 69999999999998874 69999999999999998888887632 348999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHhh------h-ccccEEEcchhHH-HHHHhccCCCccccccceEEeecccccccC----
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQ------I-EETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDN---- 638 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~------~-~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d~---- 638 (2158)
.++. ..++++..++|+.+...+. . ..++|+|+||+++ +.+.+ ..++++++|||||||++...
T Consensus 142 ~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-----l~~~~l~~lViDEaH~l~~~~r~~ 215 (1104)
T 4ddu_A 142 QKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFVDDVDAVLKASRNI 215 (1104)
T ss_dssp HTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-----HHTSCCSEEEESCHHHHTTSSHHH
T ss_pred HHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-----hcccCcCEEEEeCCCccccccccc
Confidence 9955 7789999999998764321 1 2489999999997 43332 34568999999999987641
Q ss_pred --------Chhh-HHHHHHHHHH--HHhhcc--ccccEEEEcccc-CCh---HHHHHHHhccccCceEEecCCcccccce
Q 000114 639 --------RGPV-LESIVARTVR--QIETTK--EHIRLVGLSATL-PNY---EDVALFLRVNLEKGLFYFDNSYRPVPLS 701 (2158)
Q Consensus 639 --------rg~~-le~iv~r~~~--~~~~~~--~~~riv~lSATl-pn~---~dv~~~l~~~~~~~~~~f~~~~rpv~l~ 701 (2158)
+.+. +..++..+.. ...... ...|++++|||+ |.. .....++.... ......+..+.
T Consensus 216 Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v------~~~~~~~~~i~ 289 (1104)
T 4ddu_A 216 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTV------GRLVSVARNIT 289 (1104)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCC------CBCCCCCCCEE
T ss_pred hhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEe------ccCCCCcCCce
Confidence 1112 3333332210 000111 678999999994 432 11222322111 11112222344
Q ss_pred eEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhh
Q 000114 702 QQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHT 781 (2158)
Q Consensus 702 ~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 781 (2158)
+.++.. .+ ...+ ...+.. . ++++||||++++.+..++..|...+.
T Consensus 290 ~~~~~~--~k----~~~L----~~ll~~-~-~~~~LVF~~s~~~a~~l~~~L~~~g~----------------------- 334 (1104)
T 4ddu_A 290 HVRISS--RS----KEKL----VELLEI-F-RDGILIFAQTEEEGKELYEYLKRFKF----------------------- 334 (1104)
T ss_dssp EEEESC--CC----HHHH----HHHHHH-H-CSSEEEEESSSHHHHHHHHHHHHTTC-----------------------
T ss_pred eEEEec--CH----HHHH----HHHHHh-c-CCCEEEEECcHHHHHHHHHHHHhCCC-----------------------
Confidence 444322 11 1111 222222 2 58999999999999999999987542
Q ss_pred hccCcchhhhhccCCeE-EecCCCCHHHHHHHHHHHhCCCceEEEe----chhhhhccCCCc-eEEEEeccccc
Q 000114 782 DMVKSNDLKDLLPYGFA-IHHAGMTRGDRQLVEDLFGDGHVQVLVS----TATLAWGVNLPA-HTVIIKGTQIY 849 (2158)
Q Consensus 782 ~~~~~~~l~~ll~~gv~-~hHagl~~~~R~~v~~~F~~g~i~VLVa----T~tla~GVdlP~-v~vVI~~~~~y 849 (2158)
.+. .+|| +|+. ++.|++|+++|||| |+++++|||+|+ +++||+++.|-
T Consensus 335 --------------~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 335 --------------NVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp --------------CEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred --------------CeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 244 5688 3555 99999999999999 999999999999 99999954443
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.9e-31 Score=358.34 Aligned_cols=338 Identities=17% Similarity=0.202 Sum_probs=216.4
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcC-CCceEEEEEcccHHHHHHH-HHHHHHHhcCCC
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASE-TGVMRAVYIAPLEALAKER-YRDWEIKFGQGL 1418 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~-~~~~~~v~IaP~raLa~q~-~~~~~~~f~~~~ 1418 (2158)
.|+|+|.++++.++.+ .++++++|||+|||++|++|++..+..... +.+.++|||+|+++|+.|+ ++.+++.++.
T Consensus 7 ~l~~~Q~~~i~~il~g-~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-- 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEG-KNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-- 83 (699)
T ss_dssp CCCHHHHHHHHHHHSS-CCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT--
T ss_pred CccHHHHHHHHHHHhC-CCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc--
Confidence 6999999999999985 569999999999999999999988876321 1112899999999999999 9999966553
Q ss_pred CcEEEEEcCCcchh---hhcccCCcEEEeCHHHHHHHHhhh----hccccccceeEEEecccccccCCCCChHHHHHHHH
Q 000114 1419 GMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRW----KQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRM 1491 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~----~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl 1491 (2158)
++++..++|+.... ......++|+|+||+++...+.+. .....+.++++|||||||++.. ++.+..++.++
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~--~~~~~~i~~~~ 161 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK--EAVYNNIMRHY 161 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBT--TBSSCSHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCc--cchHHHHHHHH
Confidence 47899999987654 223457799999999998766321 1234578899999999998853 22333333322
Q ss_pred HHH-HhhcC---------CCceEEEeccCCCCh------------HHHHHHhccCCCceEecCCC--------CcccccE
Q 000114 1492 RYI-ASQVE---------NKIRIVALSTSLANA------------KDLGEWIGATSHGLFNFPPG--------VRPVPLE 1541 (2158)
Q Consensus 1492 ~~i-~~~~~---------~~~riV~lSATl~n~------------~dl~~wl~~~~~~i~~f~~~--------~rpv~l~ 1541 (2158)
... ..... ...++++||||+.+. .++..+++... +...... .+|....
T Consensus 162 l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~--i~~~~~~~~~l~~~~~~p~~~~ 239 (699)
T 4gl2_A 162 LMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFT--IKTVKENLDQLKNQIQEPCKKF 239 (699)
T ss_dssp HHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSC--CCCCCTTHHHHHHHSCCCEEEE
T ss_pred HHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCE--EEeecCchHHHhhhcCCCceEE
Confidence 111 00011 467999999999862 22334444311 1100000 1111111
Q ss_pred EEEecccccc----------------------------hHHHH-------------------------------------
Q 000114 1542 IHIQGVDITN----------------------------FEARM------------------------------------- 1556 (2158)
Q Consensus 1542 ~~i~~~~~~~----------------------------~~~~~------------------------------------- 1556 (2158)
.......... +....
T Consensus 240 ~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (699)
T 4gl2_A 240 AIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRM 319 (699)
T ss_dssp EEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCH
T ss_pred EEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1110000000 00000
Q ss_pred ------------------------------------------------------------HhcChHHHHHHHHhHh--c-
Q 000114 1557 ------------------------------------------------------------QAMTKPTFTAIVQHAK--N- 1573 (2158)
Q Consensus 1557 ------------------------------------------------------------~~~~k~~~~~i~~~~~--~- 1573 (2158)
..........+..... +
T Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~ 399 (699)
T 4gl2_A 320 IDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEE 399 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 0000001111222212 2
Q ss_pred CCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCC--------CCH
Q 000114 1574 EKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG--------LNK 1645 (2158)
Q Consensus 1574 ~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~--------l~~ 1645 (2158)
++++||||++++.++.++..|...... ...+..+..+||+ |+.
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l-----------------------------~~~g~~~~~lhg~~~~~~~~~~~~ 450 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKF-----------------------------AEVGVKAHHLIGAGHSSEFKPMTQ 450 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSC-----------------------------C-----CEECCCSCCCTTCCCCCH
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccc-----------------------------cccCcceEEEECCCCccCCCCCCH
Confidence 789999999999999999877432000 0023457899999 999
Q ss_pred HHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEe
Q 000114 1646 TDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2158)
Q Consensus 1646 ~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~ 1725 (2158)
.+|..+++.|++|.++|||||+++++|||+|++.+|| +++.|.++.+|+||+|||||.| +.+++++
T Consensus 451 ~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI----------~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~ 516 (699)
T 4gl2_A 451 NEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVI----------RYGLVTNEIAMVQARGRARADE----STYVLVA 516 (699)
T ss_dssp HHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCE----------EESCCCCHHHHHHHHTTSCSSS----CEEEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEE----------EeCCCCCHHHHHHHcCCCCCCC----ceEEEEE
Confidence 9999999999999999999999999999999999999 5667889999999999988754 4555555
Q ss_pred cCC
Q 000114 1726 HAP 1728 (2158)
Q Consensus 1726 ~~~ 1728 (2158)
...
T Consensus 517 ~~~ 519 (699)
T 4gl2_A 517 HSG 519 (699)
T ss_dssp ESS
T ss_pred eCC
Confidence 544
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=356.68 Aligned_cols=309 Identities=18% Similarity=0.255 Sum_probs=225.7
Q ss_pred CCCCCCHHHHHHHHHHHc----CC-CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALS----SA-DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~----~~-~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~ 566 (2158)
+| ++||+|.++++.++. +. .++|+|||||+|||.+|+++++..+.. +.+++|++||++||.|+
T Consensus 601 ~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~-----------g~~vlvlvPt~~La~Q~ 668 (1151)
T 2eyq_A 601 PF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN-----------HKQVAVLVPTTLLAQQH 668 (1151)
T ss_dssp CS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT-----------TCEEEEECSSHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh-----------CCeEEEEechHHHHHHH
Confidence 55 479999999999887 32 379999999999999999999887643 34899999999999999
Q ss_pred HHHHHhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCC
Q 000114 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNR 639 (2158)
Q Consensus 567 ~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~r 639 (2158)
++.|.+++...++++..++|........ ....+|+|+||+.+ .+ . ..++++++|||||+|++
T Consensus 669 ~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll---~~-~---~~~~~l~lvIiDEaH~~---- 737 (1151)
T 2eyq_A 669 YDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL---QS-D---VKFKDLGLLIVDEEHRF---- 737 (1151)
T ss_dssp HHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH---HS-C---CCCSSEEEEEEESGGGS----
T ss_pred HHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH---hC-C---ccccccceEEEechHhc----
Confidence 9999999988889999999876544321 23589999999854 22 1 34678999999999986
Q ss_pred hhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHh
Q 000114 640 GPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLM 719 (2158)
Q Consensus 640 g~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l 719 (2158)
|.....++.. ....+++++||||++. ..+...+... ..............++...+... ...
T Consensus 738 g~~~~~~l~~-------l~~~~~vl~lSATp~p-~~l~~~~~~~-~~~~~i~~~~~~r~~i~~~~~~~---~~~------ 799 (1151)
T 2eyq_A 738 GVRHKERIKA-------MRANVDILTLTATPIP-RTLNMAMSGM-RDLSIIATPPARRLAVKTFVREY---DSM------ 799 (1151)
T ss_dssp CHHHHHHHHH-------HHTTSEEEEEESSCCC-HHHHHHHTTT-SEEEECCCCCCBCBCEEEEEEEC---CHH------
T ss_pred ChHHHHHHHH-------hcCCCCEEEEcCCCCh-hhHHHHHhcC-CCceEEecCCCCccccEEEEecC---CHH------
Confidence 3333333322 2457899999999653 3333333221 11111111111112222222211 111
Q ss_pred hHHHHHHH-HHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeE
Q 000114 720 NDLCYEKV-VAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFA 798 (2158)
Q Consensus 720 ~~~~~~~i-~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~ 798 (2158)
.+...+ .+...+++++|||++++.+..++..|..... ..+++
T Consensus 800 --~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p-----------------------------------~~~v~ 842 (1151)
T 2eyq_A 800 --VVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP-----------------------------------EARIA 842 (1151)
T ss_dssp --HHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCT-----------------------------------TSCEE
T ss_pred --HHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCC-----------------------------------CCeEE
Confidence 111122 2334578999999999999999998876421 24688
Q ss_pred EecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCC
Q 000114 799 IHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDS 878 (2158)
Q Consensus 799 ~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~ 878 (2158)
++||+|+..+|..+++.|++|+++|||||+++++|||+|++++||. +++.. +++.+|.||+||+||.| .
T Consensus 843 ~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi----~~~~~-----~~l~~l~Qr~GRvgR~g--~ 911 (1151)
T 2eyq_A 843 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII----ERADH-----FGLAQLHQLRGRVGRSH--H 911 (1151)
T ss_dssp ECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE----TTTTS-----SCHHHHHHHHTTCCBTT--B
T ss_pred EEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEE----eCCCC-----CCHHHHHHHHhccCcCC--C
Confidence 9999999999999999999999999999999999999999999886 55432 37789999999999987 6
Q ss_pred ccEEEEEcCCC
Q 000114 879 YGEGIIITGHS 889 (2158)
Q Consensus 879 ~G~~iil~~~~ 889 (2158)
.|.|++++...
T Consensus 912 ~g~~~ll~~~~ 922 (1151)
T 2eyq_A 912 QAYAWLLTPHP 922 (1151)
T ss_dssp CEEEEEEECCG
T ss_pred ceEEEEEECCc
Confidence 79999998764
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=329.45 Aligned_cols=326 Identities=20% Similarity=0.255 Sum_probs=225.7
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.|+|+|.++++.++.+ ++++++|||+|||+++.++++..+.. .++ ++|||+|+++|+.|+++++.+.++ ..+.
T Consensus 9 ~l~~~Q~~~i~~~~~~--~~ll~~~tG~GKT~~~~~~~~~~~~~--~~~--~~liv~P~~~L~~q~~~~~~~~~~-~~~~ 81 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET--NCLIVLPTGLGKTLIAMMIAEYRLTK--YGG--KVLMLAPTKPLVLQHAESFRRLFN-LPPE 81 (494)
T ss_dssp CCCHHHHHHHHHGGGS--CEEEECCTTSCHHHHHHHHHHHHHHH--SCS--CEEEECSSHHHHHHHHHHHHHHBC-SCGG
T ss_pred CccHHHHHHHHHHhhC--CEEEEcCCCCCHHHHHHHHHHHHHhc--CCC--eEEEEECCHHHHHHHHHHHHHHhC-cchh
Confidence 6999999999999986 79999999999999999999887763 344 899999999999999999996553 2345
Q ss_pred EEEEEcCCcchhh--hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhc
Q 000114 1421 RVVELTGETAMDL--KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~--~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~ 1498 (2158)
++..++|+..... .....++|+|+||+.+...+.. ....+.++++||+||||++.+.. .+..+...+.. .
T Consensus 82 ~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~--~~~~~~~~~~vIiDEaH~~~~~~--~~~~~~~~~~~----~ 153 (494)
T 1wp9_A 82 KIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLA--GRISLEDVSLIVFDEAHRAVGNY--AYVFIAREYKR----Q 153 (494)
T ss_dssp GEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHT--TSCCTTSCSEEEEETGGGCSTTC--HHHHHHHHHHH----H
T ss_pred heEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhc--CCcchhhceEEEEECCcccCCCC--cHHHHHHHHHh----c
Confidence 8899999876542 2345779999999999876654 23457889999999999987432 33334433332 2
Q ss_pred CCCceEEEeccCCCC-hHH---HHHHhccCCCceEe-cCCCC----cccccEEEEecccccc--h---------------
Q 000114 1499 ENKIRIVALSTSLAN-AKD---LGEWIGATSHGLFN-FPPGV----RPVPLEIHIQGVDITN--F--------------- 1552 (2158)
Q Consensus 1499 ~~~~riV~lSATl~n-~~d---l~~wl~~~~~~i~~-f~~~~----rpv~l~~~i~~~~~~~--~--------------- 1552 (2158)
....++++||||+.+ ..+ +..+++........ ..+.. .+..........+... .
T Consensus 154 ~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (494)
T 1wp9_A 154 AKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPL 233 (494)
T ss_dssp CSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999975 334 44444432111100 00000 1111111000000000 0
Q ss_pred ----------------------------------------------------------------HHHHH-----------
Q 000114 1553 ----------------------------------------------------------------EARMQ----------- 1557 (2158)
Q Consensus 1553 ----------------------------------------------------------------~~~~~----------- 1557 (2158)
...+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 313 (494)
T 1wp9_A 234 AETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGST 313 (494)
T ss_dssp HHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccc
Confidence 00000
Q ss_pred -------------------------hcChHHHHH----HHHhH--hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccc
Q 000114 1558 -------------------------AMTKPTFTA----IVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS 1606 (2158)
Q Consensus 1558 -------------------------~~~k~~~~~----i~~~~--~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~ 1606 (2158)
....+.... +.... .++.++||||++++.+..++..|..
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~---------- 383 (494)
T 1wp9_A 314 KASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVK---------- 383 (494)
T ss_dssp HHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH----------
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHH----------
Confidence 001111111 11221 3578999999999999988866632
Q ss_pred cccCCCcccchhhHhhhhHHHHHHHhcccEEEecC--------CCCHHHHHHHHHHHHcCCceEEEecCccccccCCCcc
Q 000114 1607 AFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHE--------GLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAH 1678 (2158)
Q Consensus 1607 ~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~--------~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~ 1678 (2158)
.+..+..+|| +|+..+|..+++.|++|.++|||||+++++|+|+|++
T Consensus 384 -------------------------~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~ 438 (494)
T 1wp9_A 384 -------------------------DGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEV 438 (494)
T ss_dssp -------------------------TTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTC
T ss_pred -------------------------cCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhC
Confidence 1456888999 9999999999999999999999999999999999999
Q ss_pred EEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCCh
Q 000114 1679 LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1679 ~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~ 1729 (2158)
.+|| +++.+.++..|+||+|||||.| .|.+++++....
T Consensus 439 ~~Vi----------~~d~~~~~~~~~Qr~GR~~R~g---~g~~~~l~~~~t 476 (494)
T 1wp9_A 439 DLVV----------FYEPVPSAIRSIQRRGRTGRHM---PGRVIILMAKGT 476 (494)
T ss_dssp CEEE----------ESSCCHHHHHHHHHHTTSCSCC---CSEEEEEEETTS
T ss_pred CEEE----------EeCCCCCHHHHHHHHhhccCCC---CceEEEEEecCC
Confidence 9988 4555667999999999999987 389998887764
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-31 Score=369.78 Aligned_cols=274 Identities=14% Similarity=0.138 Sum_probs=189.8
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
||. | |+|.++++.++.+ .|++++||||||||+ |.+|++..+.. .+. ++|||+||++||.|+++.+++ +...
T Consensus 55 g~~-p-~iQ~~ai~~il~g-~dvlv~apTGSGKTl-~~lp~l~~~~~--~~~--~~lil~PtreLa~Q~~~~l~~-l~~~ 125 (1054)
T 1gku_B 55 GEP-R-AIQKMWAKRILRK-ESFAATAPTGVGKTS-FGLAMSLFLAL--KGK--RCYVIFPTSLLVIQAAETIRK-YAEK 125 (1054)
T ss_dssp CSC-C-HHHHHHHHHHHTT-CCEECCCCBTSCSHH-HHHHHHHHHHT--TSC--CEEEEESCHHHHHHHHHHHHH-HHTT
T ss_pred CCC-H-HHHHHHHHHHHhC-CCEEEEcCCCCCHHH-HHHHHHHHHhh--cCC--eEEEEeccHHHHHHHHHHHHH-HHhh
Confidence 688 9 9999999999975 569999999999998 88888877755 233 899999999999999999995 4444
Q ss_pred CCc----EEEEEcCCcchhh-----hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHH
Q 000114 1418 LGM----RVVELTGETAMDL-----KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2158)
Q Consensus 1418 ~g~----~v~~ltG~~~~~~-----~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~i 1488 (2158)
.++ +++.++|+.+... +.+..++|+|+||+++..++.+ ++++++|||||||++.+ +|+.++.++
T Consensus 126 ~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~------L~~l~~lViDEah~~l~-~~~~~~~i~ 198 (1054)
T 1gku_B 126 AGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE------LGHFDFIFVDDVDAILK-ASKNVDKLL 198 (1054)
T ss_dssp TCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT------SCCCSEEEESCHHHHHT-STHHHHHHH
T ss_pred cCCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH------hccCCEEEEeChhhhhh-ccccHHHHH
Confidence 577 8999999877643 3344589999999998876554 66899999999999987 677888887
Q ss_pred HHHHHHH----hhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCC-CcccccEEEEecccccchHHHHHhcChHH
Q 000114 1489 SRMRYIA----SQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPG-VRPVPLEIHIQGVDITNFEARMQAMTKPT 1563 (2158)
Q Consensus 1489 srl~~i~----~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~-~rpv~l~~~i~~~~~~~~~~~~~~~~k~~ 1563 (2158)
.++.+.. ...+...+++++|||+++..++..++...... +...+. .....+...+... .. . ..
T Consensus 199 ~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~-i~v~~~~~~~~~i~~~~~~~--~k--------~-~~ 266 (1054)
T 1gku_B 199 HLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN-FDIGSSRITVRNVEDVAVND--ES--------I-ST 266 (1054)
T ss_dssp HHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC-CCCSCCEECCCCEEEEEESC--CC--------T-TT
T ss_pred HHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceE-EEccCcccCcCCceEEEech--hH--------H-HH
Confidence 7664311 12245678999999998754333222111100 001111 1111122222210 00 0 11
Q ss_pred HHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCC
Q 000114 1564 FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGL 1643 (2158)
Q Consensus 1564 ~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l 1643 (2158)
...+... .++++||||+|++.|+.++..|.. . ..++.+||+|
T Consensus 267 L~~ll~~--~~~~~LVF~~t~~~a~~l~~~L~~----------------------------------~--~~v~~lhg~~ 308 (1054)
T 1gku_B 267 LSSILEK--LGTGGIIYARTGEEAEEIYESLKN----------------------------------K--FRIGIVTATK 308 (1054)
T ss_dssp THHHHTT--SCSCEEEEESSHHHHHHHHHTTTT----------------------------------S--SCEEECTTSS
T ss_pred HHHHHhh--cCCCEEEEEcCHHHHHHHHHHHhh----------------------------------c--cCeeEEeccH
Confidence 1122222 267899999999999988855421 1 4589999998
Q ss_pred CHHHHHHHHHHHHcCCceEEEe----cCccccccCCCcc-EEEE
Q 000114 1644 NKTDQEVVSALFEAGKIKVCVM----SSSMCWGVPLTAH-LVVV 1682 (2158)
Q Consensus 1644 ~~~dR~~v~~~F~~g~i~VLVa----T~~la~Gvdlp~~-~vVI 1682 (2158)
..+++.|++|+++|||| |+++++|||+|++ .+||
T Consensus 309 -----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI 347 (1054)
T 1gku_B 309 -----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAV 347 (1054)
T ss_dssp -----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEE
T ss_pred -----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEE
Confidence 37889999999999999 9999999999994 6666
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=333.00 Aligned_cols=351 Identities=16% Similarity=0.178 Sum_probs=236.9
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.|| .|+++|..+++.++.|+ |+.|+||+|||++|.+|++..... +..+++|+||++||.|.++.+
T Consensus 80 lG~-~pt~VQ~~~ip~ll~G~---Iaea~TGeGKTlaf~LP~~l~aL~-----------g~~vlVltptreLA~qd~e~~ 144 (844)
T 1tf5_A 80 TGM-FPFKVQLMGGVALHDGN---IAEMKTGEGKTLTSTLPVYLNALT-----------GKGVHVVTVNEYLASRDAEQM 144 (844)
T ss_dssp HSC-CCCHHHHHHHHHHHTTS---EEECCTTSCHHHHHHHHHHHHHTT-----------SSCEEEEESSHHHHHHHHHHH
T ss_pred cCC-CCcHHHHHhhHHHhCCC---EEEccCCcHHHHHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHH
Confidence 389 99999999999998875 999999999999999999854322 236999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHhh-hccccEEEcchhHH--HHHHhccC---CCccccccceEEeecccccc-cC-Chh-
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLLH-DN-RGP- 641 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~-~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~lIIiDEaH~l~-d~-rg~- 641 (2158)
..++..+|++|+.++|+.+...+. ...++|+|+||+++ |.+..+.. ....++.+.++||||||.++ |. +.|
T Consensus 145 ~~l~~~lgl~v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tpl 224 (844)
T 1tf5_A 145 GKIFEFLGLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPL 224 (844)
T ss_dssp HHHHHHTTCCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEE
T ss_pred HHHHhhcCCeEEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccch
Confidence 999999999999999998654332 34789999999997 66655431 23456889999999999876 53 322
Q ss_pred ----------hHHHHHHHHHHHHhhcc---------ccccEE-----------------EEccccCC-hHHHHHHHhcc-
Q 000114 642 ----------VLESIVARTVRQIETTK---------EHIRLV-----------------GLSATLPN-YEDVALFLRVN- 683 (2158)
Q Consensus 642 ----------~le~iv~r~~~~~~~~~---------~~~riv-----------------~lSATlpn-~~dv~~~l~~~- 683 (2158)
.+...+..+. ...+ ...+++ ++|||.+. ...+...+.+.
T Consensus 225 Iisg~~~~~~~~~~~i~~iv---~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~ 301 (844)
T 1tf5_A 225 IISGQAAKSTKLYVQANAFV---RTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHV 301 (844)
T ss_dssp EEEEEEECCCHHHHHHHHHH---TTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHH
T ss_pred hhcCCcccchhHHHHHHHHH---HhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHH
Confidence 1222222222 2222 234444 66777542 11221111100
Q ss_pred ----------------------------------------------c---------------------------------
Q 000114 684 ----------------------------------------------L--------------------------------- 684 (2158)
Q Consensus 684 ----------------------------------------------~--------------------------------- 684 (2158)
.
T Consensus 302 l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~ 381 (844)
T 1tf5_A 302 AMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEE 381 (844)
T ss_dssp TCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGH
T ss_pred HhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhH
Confidence 0
Q ss_pred -------cCceEEecCCccccccee--EEEeeccCChhHHHHHhhHHHHHHHHHH-hCCCeEEEEecChHHHHHHHHHHH
Q 000114 685 -------EKGLFYFDNSYRPVPLSQ--QYIGIQVKKPLQRFQLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIR 754 (2158)
Q Consensus 685 -------~~~~~~f~~~~rpv~l~~--~~~~~~~~~~~~~~~~l~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~ 754 (2158)
.-.+ ...+..+|+.-.. .++.. ....++..+.. .+.+. ..+.++||||+|+..++.++..|.
T Consensus 382 ~e~~~iY~l~v-v~IPtn~p~~r~d~~d~v~~---~~~~K~~al~~----~i~~~~~~~~pvLVft~s~~~se~Ls~~L~ 453 (844)
T 1tf5_A 382 EEFRNIYNMQV-VTIPTNRPVVRDDRPDLIYR---TMEGKFKAVAE----DVAQRYMTGQPVLVGTVAVETSELISKLLK 453 (844)
T ss_dssp HHHHHHHCCCE-EECCCSSCCCCEECCCEEES---SHHHHHHHHHH----HHHHHHHHTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHhCCce-EEecCCCCcccccCCcEEEe---CHHHHHHHHHH----HHHHHHhcCCcEEEEECCHHHHHHHHHHHH
Confidence 0000 1112222221110 01111 12233333332 22222 236789999999999999999998
Q ss_pred HHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhcc
Q 000114 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGV 834 (2158)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GV 834 (2158)
..++.. ..+||++...+|..+.+.|+.| .|+|||++++||+
T Consensus 454 ~~gi~~-------------------------------------~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~ 494 (844)
T 1tf5_A 454 NKGIPH-------------------------------------QVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGT 494 (844)
T ss_dssp TTTCCC-------------------------------------EEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTC
T ss_pred HCCCCE-------------------------------------EEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCc
Confidence 766443 4559999999988777777666 6999999999999
Q ss_pred CCC--------ceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcH-------HHHHHh--
Q 000114 835 NLP--------AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL-------RYYLSL-- 897 (2158)
Q Consensus 835 dlP--------~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~-------~~y~~l-- 897 (2158)
|+| ++.+||+ |+.+. |...|.||+||+||.| ..|.++.+++..+. .....+
T Consensus 495 DI~l~~~V~~~ggl~VIn----~d~p~------s~r~y~hr~GRTGRqG--~~G~s~~~vs~eD~l~r~f~~~~~~~~~~ 562 (844)
T 1tf5_A 495 DIKLGEGVKELGGLAVVG----TERHE------SRRIDNQLRGRSGRQG--DPGITQFYLSMEDELMRRFGAERTMAMLD 562 (844)
T ss_dssp CCCCCTTSGGGTSEEEEE----SSCCS------SHHHHHHHHTTSSGGG--CCEEEEEEEETTSSGGGSSHHHHHHHHHH
T ss_pred CccccchhhhcCCcEEEE----ecCCC------CHHHHHhhcCccccCC--CCCeEEEEecHHHHHHHHHhHHHHHHHHH
Confidence 999 8899999 66665 7789999999999987 77999988776441 112222
Q ss_pred ---hcCCCcccchhhHhhHHHHHH
Q 000114 898 ---MNQQLPIESQFVSKLADQLNA 918 (2158)
Q Consensus 898 ---l~~~~pieS~l~~~l~d~lna 918 (2158)
+....||++.......+....
T Consensus 563 ~~~~~~~~~i~~~~~~~~i~~aq~ 586 (844)
T 1tf5_A 563 RFGMDDSTPIQSKMVSRAVESSQK 586 (844)
T ss_dssp HHTCCSSSCBCCHHHHHHHHHHHH
T ss_pred hcCCCCccccchHHHHHHHHHHHH
Confidence 234567888777765554433
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-30 Score=354.85 Aligned_cols=348 Identities=19% Similarity=0.253 Sum_probs=195.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
|+..|+|+|.++++.++.+ .|+++++|||||||++|.+|++..+.......+.++|||+|+++|+.|+++.|++.+..
T Consensus 245 ~~~~~r~~Q~~ai~~il~g-~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~- 322 (936)
T 4a2w_A 245 ETKKARSYQIELAQPAING-KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER- 322 (936)
T ss_dssp ---CCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT-
T ss_pred CCCCCCHHHHHHHHHHHcC-CCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc-
Confidence 4778999999999999875 56999999999999999999998877632211338999999999999999999966553
Q ss_pred CCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccc-cccceeEEEecccccccCCCCChHHHHHHHHHH
Q 000114 1418 LGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRK-YVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~-~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~ 1493 (2158)
.++++..++|+..... .....++|+|+||+++...+++ ... .+.++++|||||||++.... .+..++.++..
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~--~~~~~l~~~~liViDEaH~~~~~~--~~~~i~~~~~~ 398 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED--GTLTSLSIFTLMIFDECHNTTGNH--PYNVLMTRYLE 398 (936)
T ss_dssp TTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHS--SSCCCGGGCSEEEEETGGGCSTTC--HHHHHHHHHHH
T ss_pred cCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHc--CccccccCCCEEEEECccccCCCc--cHHHHHHHHHH
Confidence 4889999999875442 2345679999999999887764 222 57889999999999987543 35555544432
Q ss_pred H-HhhcCCCceEEEeccCCCC--hH----------HHHHHhccCCCceEecCCC--------CcccccEEEEec------
Q 000114 1494 I-ASQVENKIRIVALSTSLAN--AK----------DLGEWIGATSHGLFNFPPG--------VRPVPLEIHIQG------ 1546 (2158)
Q Consensus 1494 i-~~~~~~~~riV~lSATl~n--~~----------dl~~wl~~~~~~i~~f~~~--------~rpv~l~~~i~~------ 1546 (2158)
. ........++++||||+.. .. .+...++... +...... .+|......+..
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~--i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~ 476 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQA--ISTVRENIQELQRFMNKPEIDVRLVKRRIHNPF 476 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHHHSCCCCEEEEECCCCSCCHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCce--eecccccHHHHHHhccCCcceEEecccccCcHH
Confidence 2 1112456899999999943 21 1222333210 0000000 011110110000
Q ss_pred -------------------------------ccccchHHHH---------------------------------------
Q 000114 1547 -------------------------------VDITNFEARM--------------------------------------- 1556 (2158)
Q Consensus 1547 -------------------------------~~~~~~~~~~--------------------------------------- 1556 (2158)
+....+....
T Consensus 477 ~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al 556 (936)
T 4a2w_A 477 AAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 556 (936)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000
Q ss_pred ---------------Hh------------------------------------cChHHHHHHHHhH------hcCCCEEE
Q 000114 1557 ---------------QA------------------------------------MTKPTFTAIVQHA------KNEKPALV 1579 (2158)
Q Consensus 1557 ---------------~~------------------------------------~~k~~~~~i~~~~------~~~~~~IV 1579 (2158)
.. ...+....+...+ .++.++||
T Consensus 557 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLI 636 (936)
T 4a2w_A 557 IISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLL 636 (936)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEE
T ss_pred hhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEE
Confidence 00 0011111111111 34688999
Q ss_pred EecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHc-C
Q 000114 1580 FVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA-G 1658 (2158)
Q Consensus 1580 Fv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~-g 1658 (2158)
||++++.+..++..|.......+.... ...+.+...+||+|+..+|..+++.|++ |
T Consensus 637 F~~t~~~ae~L~~~L~~~~~l~~ik~~-----------------------~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g 693 (936)
T 4a2w_A 637 FAKTRALVSALKKCMEENPILNYIKPG-----------------------VLMGRGRRDQTTGMTLPSQKGVLDAFKTSK 693 (936)
T ss_dssp EESSHHHHHHHHHHHHHCSTTSSCCCE-----------------------EC----------------------------
T ss_pred EeCCHHHHHHHHHHHhhCcccccccee-----------------------EEecCCCcccCCCCCHHHHHHHHHHhhccC
Confidence 999999999999888653111110000 0124556778999999999999999999 9
Q ss_pred CceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChH
Q 000114 1659 KIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK 1730 (2158)
Q Consensus 1659 ~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~ 1730 (2158)
.++|||||+++++|||+|++.+|| +++.|.++..|+||+|| ||. ..|.+++++.....
T Consensus 694 ~~~VLVaT~~~~eGIDlp~v~~VI----------~yD~p~s~~~~iQr~GR-GR~---~~g~vi~Li~~~t~ 751 (936)
T 4a2w_A 694 DNRLLIATSVADEGIDIVQCNLVV----------LYEYSGNVTKMIQVRGR-GRA---AGSKCILVTSKTEV 751 (936)
T ss_dssp CCSEEEEECC------CCCCSEEE----------EESCCSCSHHHHCC-----------CCCEEEEESCHHH
T ss_pred CeeEEEEeCchhcCCcchhCCEEE----------EeCCCCCHHHHHHhcCC-CCC---CCCEEEEEEeCCCH
Confidence 999999999999999999999999 55667799999999999 995 67889998877543
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-31 Score=340.59 Aligned_cols=299 Identities=16% Similarity=0.170 Sum_probs=202.1
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
|+.+++|+|+ +++.++.++++++++||||||||++|++|++..+... +.++||++||++||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~----------~~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR----------RLRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc----------CCcEEEECCCHHHHHHHHHHhc
Confidence 6788999985 7999999988889999999999999999999876542 3479999999999999999874
Q ss_pred hhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHH-HHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHH
Q 000114 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVART 650 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~ 650 (2158)
|..+....+... ........|.++|++.+ ..+.+. ..+.++++|||||||++.......++.+..+
T Consensus 70 ------g~~v~~~~~~~~--~~~~~~~~i~~~t~~~l~~~l~~~----~~l~~~~~iViDEah~~~~~~~~~~~~~~~~- 136 (451)
T 2jlq_A 70 ------GLPIRYQTPAVK--SDHTGREIVDLMCHATFTTRLLSS----TRVPNYNLIVMDEAHFTDPCSVAARGYISTR- 136 (451)
T ss_dssp ------TSCEEECCTTCS--CCCCSSCCEEEEEHHHHHHHHHHC----SCCCCCSEEEEETTTCCSHHHHHHHHHHHHH-
T ss_pred ------Cceeeeeecccc--ccCCCCceEEEEChHHHHHHhhCc----ccccCCCEEEEeCCccCCcchHHHHHHHHHh-
Confidence 333432222211 12234567999999986 333322 4577899999999998721222222222111
Q ss_pred HHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHH
Q 000114 651 VRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAV 730 (2158)
Q Consensus 651 ~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ 730 (2158)
...+++++++||||+|+ .+..++... ....... +++|... + ..+.. .+.+
T Consensus 137 -----~~~~~~~~i~~SAT~~~--~~~~~~~~~--~~~~~~~---~~~p~~~-~------------~~~~~----~l~~- 186 (451)
T 2jlq_A 137 -----VEMGEAAAIFMTATPPG--STDPFPQSN--SPIEDIE---REIPERS-W------------NTGFD----WITD- 186 (451)
T ss_dssp -----HHTTSCEEEEECSSCTT--CCCSSCCCS--SCEEEEE---CCCCSSC-C------------SSSCH----HHHH-
T ss_pred -----hcCCCceEEEEccCCCc--cchhhhcCC--CceEecC---ccCCchh-h------------HHHHH----HHHh-
Confidence 13457999999999874 111111111 1111111 1111100 0 00111 1111
Q ss_pred hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHH
Q 000114 731 AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810 (2158)
Q Consensus 731 ~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~ 810 (2158)
..+++||||+|++.|+.++..|...+ ..+..+|+.+ |.
T Consensus 187 -~~~~~lVF~~s~~~a~~l~~~L~~~g-------------------------------------~~~~~lh~~~----~~ 224 (451)
T 2jlq_A 187 -YQGKTVWFVPSIKAGNDIANCLRKSG-------------------------------------KRVIQLSRKT----FD 224 (451)
T ss_dssp -CCSCEEEECSSHHHHHHHHHHHHTTT-------------------------------------CCEEEECTTT----HH
T ss_pred -CCCCEEEEcCCHHHHHHHHHHHHHcC-------------------------------------CeEEECCHHH----HH
Confidence 26799999999999999999887543 2345568865 46
Q ss_pred HHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccC------CCCCc----cccCCHHHHHHhhcccCCCCCCCcc
Q 000114 811 LVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYN------PEKGA----WTELSPLDIMQMLGRAGRPQYDSYG 880 (2158)
Q Consensus 811 ~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd------~~~g~----~~~~s~~~~~Qr~GRAGR~g~d~~G 880 (2158)
.+++.|++|+++|||||+++++|||+|+ ++||+++..+. ....- -.+.|..+|+||+|||||.|.+ .|
T Consensus 225 ~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~-~g 302 (451)
T 2jlq_A 225 TEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ-ED 302 (451)
T ss_dssp HHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC-CC
T ss_pred HHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCC-Cc
Confidence 7999999999999999999999999999 99998552211 11000 0456999999999999998842 58
Q ss_pred EEEEEcCC
Q 000114 881 EGIIITGH 888 (2158)
Q Consensus 881 ~~iil~~~ 888 (2158)
.+++++..
T Consensus 303 ~~~~~~~~ 310 (451)
T 2jlq_A 303 DQYVFSGD 310 (451)
T ss_dssp EEEEECSC
T ss_pred cEEEEeCC
Confidence 88888754
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=352.97 Aligned_cols=272 Identities=14% Similarity=0.143 Sum_probs=189.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
|| .|+|+|.++++.++.+ .+++++||||||||++|+++++..+.. +. ++|||+||++||.|+++++++ |+ .
T Consensus 76 gf-~pt~iQ~~ai~~il~g-~dvlv~ApTGSGKTl~~l~~il~~~~~---~~--~~Lil~PtreLa~Q~~~~l~~-l~-~ 146 (1104)
T 4ddu_A 76 GK-DLTGYQRLWAKRIVQG-KSFTMVAPTGVGKTTFGMMTALWLARK---GK--KSALVFPTVTLVKQTLERLQK-LA-D 146 (1104)
T ss_dssp SS-CCCHHHHHHHHHHTTT-CCEEECCSTTCCHHHHHHHHHHHHHTT---TC--CEEEEESSHHHHHHHHHHHHT-TS-C
T ss_pred CC-CCCHHHHHHHHHHHcC-CCEEEEeCCCCcHHHHHHHHHHHHHhc---CC--eEEEEechHHHHHHHHHHHHH-hh-C
Confidence 46 6999999999999985 469999999999999998888877633 34 899999999999999999995 76 5
Q ss_pred CCcEEEEEcCCcchh-----hhccc--CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHH-
Q 000114 1418 LGMRVVELTGETAMD-----LKLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVS- 1489 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~-----~~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~is- 1489 (2158)
.+++++.++|+.+.. .+.+. .++|+|+||+++..++.. ..++++++|||||||++.... ..+...+.
T Consensus 147 ~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~----l~~~~l~~lViDEaH~l~~~~-r~~Dr~L~~ 221 (1104)
T 4ddu_A 147 EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVDAVLKAS-RNIDTLLMM 221 (1104)
T ss_dssp TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH----HHTSCCSEEEESCHHHHTTSS-HHHHHHHHT
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh----hcccCcCEEEEeCCCcccccc-ccchhhhHh
Confidence 688999999998752 22232 369999999999766553 346789999999999876521 11111111
Q ss_pred -----H-HHHHHhhcC-----------CCceEEEeccCC-CCh---HHHHHHhccCCCceEecCCCCcccccEEEEeccc
Q 000114 1490 -----R-MRYIASQVE-----------NKIRIVALSTSL-ANA---KDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVD 1548 (2158)
Q Consensus 1490 -----r-l~~i~~~~~-----------~~~riV~lSATl-~n~---~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~ 1548 (2158)
. +..+...++ .+.|++++|||+ +.. ..+..+++..... ....+..+...+...
T Consensus 222 ~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~-----~~~~~~~i~~~~~~~- 295 (1104)
T 4ddu_A 222 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGR-----LVSVARNITHVRISS- 295 (1104)
T ss_dssp SSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCB-----CCCCCCCEEEEEESC-
T ss_pred cCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEecc-----CCCCcCCceeEEEec-
Confidence 1 223333333 678999999994 432 2234444422111 111111222222211
Q ss_pred ccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHH
Q 000114 1549 ITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEML 1628 (2158)
Q Consensus 1549 ~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L 1628 (2158)
... .....+... .++++||||++++.|+.++..|..
T Consensus 296 --~k~--------~~L~~ll~~--~~~~~LVF~~s~~~a~~l~~~L~~-------------------------------- 331 (1104)
T 4ddu_A 296 --RSK--------EKLVELLEI--FRDGILIFAQTEEEGKELYEYLKR-------------------------------- 331 (1104)
T ss_dssp --CCH--------HHHHHHHHH--HCSSEEEEESSSHHHHHHHHHHHH--------------------------------
T ss_pred --CHH--------HHHHHHHHh--cCCCEEEEECcHHHHHHHHHHHHh--------------------------------
Confidence 111 111122222 358999999999999999876632
Q ss_pred HHHhcccEE-EecCCCCHHHHHHHHHHHHcCCceEEEe----cCccccccCCCc-cEEEE
Q 000114 1629 KATLRHGVG-YLHEGLNKTDQEVVSALFEAGKIKVCVM----SSSMCWGVPLTA-HLVVV 1682 (2158)
Q Consensus 1629 ~~~l~~gv~-~~H~~l~~~dR~~v~~~F~~g~i~VLVa----T~~la~Gvdlp~-~~vVI 1682 (2158)
.+..+. .+|| +|+. ++.|++|+++|||| |+++++|||+|+ +.+||
T Consensus 332 ---~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI 382 (1104)
T 4ddu_A 332 ---FKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVI 382 (1104)
T ss_dssp ---TTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEE
T ss_pred ---CCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEE
Confidence 245577 8898 3555 99999999999999 999999999999 88888
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-29 Score=350.43 Aligned_cols=308 Identities=17% Similarity=0.243 Sum_probs=224.8
Q ss_pred CCCCCHHHHHHHHHHhc----CC-CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHH
Q 000114 1339 FKHFNPIQTQVFTVLYN----TD-DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIK 1413 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~----~~-~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~ 1413 (2158)
| .++|+|.++++.++. +. .+++++||||||||++|+++++..+.. +. +++|++||++|+.|+++.+++.
T Consensus 602 ~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---g~--~vlvlvPt~~La~Q~~~~~~~~ 675 (1151)
T 2eyq_A 602 F-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HK--QVAVLVPTTLLAQQHYDNFRDR 675 (1151)
T ss_dssp S-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TC--EEEEECSSHHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---CC--eEEEEechHHHHHHHHHHHHHH
Confidence 5 469999999999886 32 379999999999999999998876544 34 9999999999999999999987
Q ss_pred hcCCCCcEEEEEcCCcchhh-----hccc--CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHH
Q 000114 1414 FGQGLGMRVVELTGETAMDL-----KLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEV 1486 (2158)
Q Consensus 1414 f~~~~g~~v~~ltG~~~~~~-----~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~ 1486 (2158)
|.. .++++..++|..+... +.+. ..+|+|+||+.+. ....++++++|||||+|+++. ..
T Consensus 676 ~~~-~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-------~~~~~~~l~lvIiDEaH~~g~----~~-- 741 (1151)
T 2eyq_A 676 FAN-WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-------SDVKFKDLGLLIVDEEHRFGV----RH-- 741 (1151)
T ss_dssp STT-TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-------SCCCCSSEEEEEEESGGGSCH----HH--
T ss_pred hhc-CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-------CCccccccceEEEechHhcCh----HH--
Confidence 765 3788999988655432 1122 4699999997542 234578999999999999742 11
Q ss_pred HHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhc-cCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHH
Q 000114 1487 IVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIG-ATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFT 1565 (2158)
Q Consensus 1487 ~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~-~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~ 1565 (2158)
...++. +..+.++++||||+... .+...+. .....++...+ ....++...+..... .....
T Consensus 742 -~~~l~~----l~~~~~vl~lSATp~p~-~l~~~~~~~~~~~~i~~~~-~~r~~i~~~~~~~~~-----------~~i~~ 803 (1151)
T 2eyq_A 742 -KERIKA----MRANVDILTLTATPIPR-TLNMAMSGMRDLSIIATPP-ARRLAVKTFVREYDS-----------MVVRE 803 (1151)
T ss_dssp -HHHHHH----HHTTSEEEEEESSCCCH-HHHHHHTTTSEEEECCCCC-CBCBCEEEEEEECCH-----------HHHHH
T ss_pred -HHHHHH----hcCCCCEEEEcCCCChh-hHHHHHhcCCCceEEecCC-CCccccEEEEecCCH-----------HHHHH
Confidence 122222 24578999999997543 2322222 22111222222 222344443332221 12234
Q ss_pred HHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCH
Q 000114 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (2158)
Q Consensus 1566 ~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~ 1645 (2158)
.+...+..+++++|||++++.+..++..|... ..+.++..+||+|+.
T Consensus 804 ~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~---------------------------------~p~~~v~~lhg~~~~ 850 (1151)
T 2eyq_A 804 AILREILRGGQVYYLYNDVENIQKAAERLAEL---------------------------------VPEARIAIGHGQMRE 850 (1151)
T ss_dssp HHHHHHTTTCEEEEECCCSSCHHHHHHHHHHH---------------------------------CTTSCEEECCSSCCH
T ss_pred HHHHHHhcCCeEEEEECCHHHHHHHHHHHHHh---------------------------------CCCCeEEEEeCCCCH
Confidence 44555577899999999999999988766321 114569999999999
Q ss_pred HHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEe
Q 000114 1646 TDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2158)
Q Consensus 1646 ~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~ 1725 (2158)
.+|..+++.|++|+++|||||+++++|+|+|++++||. +...++++.+|.||+||+||.| ..|.|++++
T Consensus 851 ~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi---------~~~~~~~l~~l~Qr~GRvgR~g--~~g~~~ll~ 919 (1151)
T 2eyq_A 851 RELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII---------ERADHFGLAQLHQLRGRVGRSH--HQAYAWLLT 919 (1151)
T ss_dssp HHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE---------TTTTSSCHHHHHHHHTTCCBTT--BCEEEEEEE
T ss_pred HHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEE---------eCCCCCCHHHHHHHHhccCcCC--CceEEEEEE
Confidence 99999999999999999999999999999999887772 1222468899999999999986 689999998
Q ss_pred cCC
Q 000114 1726 HAP 1728 (2158)
Q Consensus 1726 ~~~ 1728 (2158)
...
T Consensus 920 ~~~ 922 (1151)
T 2eyq_A 920 PHP 922 (1151)
T ss_dssp CCG
T ss_pred CCc
Confidence 764
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-30 Score=340.80 Aligned_cols=298 Identities=22% Similarity=0.282 Sum_probs=209.8
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCcc
Q 000114 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~ 590 (2158)
+++++++||||||||..++ +.+.... +.+|++|+|+||.|+++++.+. |+++..++|+...
T Consensus 155 rk~vlv~apTGSGKT~~al----~~l~~~~-----------~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~ 215 (677)
T 3rc3_A 155 RKIIFHSGPTNSGKTYHAI----QKYFSAK-----------SGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERV 215 (677)
T ss_dssp CEEEEEECCTTSSHHHHHH----HHHHHSS-----------SEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEE
T ss_pred CCEEEEEcCCCCCHHHHHH----HHHHhcC-----------CeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeE
Confidence 3569999999999998443 3333321 3599999999999999999875 7889999998764
Q ss_pred CHhh-hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-CChhhHHHHHHHHHHHHhhccccccEEEEcc
Q 000114 591 TRQQ-IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (2158)
Q Consensus 591 ~~~~-~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSA 668 (2158)
-... ....+++++|++.++ ..+.+++|||||||++.+ ++|..++.++.++ ....++++++||
T Consensus 216 iv~TpGr~~~il~~T~e~~~----------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l------~~~~i~il~~SA 279 (677)
T 3rc3_A 216 TVQPNGKQASHVSCTVEMCS----------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGL------CAEEVHLCGEPA 279 (677)
T ss_dssp CCSTTCCCCSEEEEEGGGCC----------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHC------CEEEEEEEECGG
T ss_pred EecCCCcccceeEecHhHhh----------hcccCCEEEEecceecCCccchHHHHHHHHcc------CccceEEEeccc
Confidence 2111 123678999988542 345689999999999987 6998888776654 236889999999
Q ss_pred ccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHH
Q 000114 669 TLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAK 748 (2158)
Q Consensus 669 Tlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~ 748 (2158)
|.+....+..+.+.. +.+....|+.++.... . .... +. .. .+..+|||+|+++++.
T Consensus 280 T~~~i~~l~~~~~~~-----~~v~~~~r~~~l~~~~-----~-~l~~---l~---------~~-~~g~iIf~~s~~~ie~ 335 (677)
T 3rc3_A 280 AIDLVMELMYTTGEE-----VEVRDYKRLTPISVLD-----H-ALES---LD---------NL-RPGDCIVCFSKNDIYS 335 (677)
T ss_dssp GHHHHHHHHHHHTCC-----EEEEECCCSSCEEECS-----S-CCCS---GG---------GC-CTTEEEECSSHHHHHH
T ss_pred hHHHHHHHHHhcCCc-----eEEEEeeecchHHHHH-----H-HHHH---HH---------hc-CCCCEEEEcCHHHHHH
Confidence 976555555444322 1222234444443210 0 0000 00 11 3345899999999999
Q ss_pred HHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhC--CCceEEEe
Q 000114 749 TARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGD--GHVQVLVS 826 (2158)
Q Consensus 749 ~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~--g~i~VLVa 826 (2158)
++..|...+ .++++|||+|++.+|..+++.|++ |.++||||
T Consensus 336 la~~L~~~g-------------------------------------~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVA 378 (677)
T 3rc3_A 336 VSRQIEIRG-------------------------------------LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVA 378 (677)
T ss_dssp HHHHHHHTT-------------------------------------CCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEE
T ss_pred HHHHHHhcC-------------------------------------CCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEe
Confidence 999887632 468899999999999999999999 99999999
Q ss_pred chhhhhccCCCceEEEEecccc---cCCCCC-ccccCCHHHHHHhhcccCCCCCC-CccEEEEEcCCCcHHHHHHhh-cC
Q 000114 827 TATLAWGVNLPAHTVIIKGTQI---YNPEKG-AWTELSPLDIMQMLGRAGRPQYD-SYGEGIIITGHSELRYYLSLM-NQ 900 (2158)
Q Consensus 827 T~tla~GVdlP~v~vVI~~~~~---yd~~~g-~~~~~s~~~~~Qr~GRAGR~g~d-~~G~~iil~~~~~~~~y~~ll-~~ 900 (2158)
|+++++|||+ .+++||+++.. ||+..+ +..++|..+|+||+|||||.|.+ ..|.|++++.. +...+.+++ ..
T Consensus 379 Tdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~-d~~~~~~~~~~~ 456 (677)
T 3rc3_A 379 TDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE-DLSLLKEILKRP 456 (677)
T ss_dssp CGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT-HHHHHHHHHHSC
T ss_pred CcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc-hHHHHHHHHhcC
Confidence 9999999999 67777774432 333211 34588999999999999999865 35777776655 444555554 44
Q ss_pred CCcccc
Q 000114 901 QLPIES 906 (2158)
Q Consensus 901 ~~pieS 906 (2158)
..+|++
T Consensus 457 ~~~i~~ 462 (677)
T 3rc3_A 457 VDPIRA 462 (677)
T ss_dssp CCCCCC
T ss_pred cchhhh
Confidence 556766
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=334.03 Aligned_cols=307 Identities=15% Similarity=0.201 Sum_probs=212.1
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
..+|+++|.++++.++.+ .++++++|||+|||++|++++...+... +.++|||+|+++|+.|++++|.+
T Consensus 111 ~~~l~~~Q~~ai~~~~~~-~~~ll~~~tGsGKT~~~~~~~~~~~~~~----------~~~vlvl~P~~~L~~Q~~~~~~~ 179 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYYLENY----------EGKILIIVPTTALTTQMADDFVD 179 (510)
T ss_dssp EECCCHHHHHHHHHHHHH-SEEEEECCSTTTHHHHHHHHHHHHHHHC----------SSEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHHHHHhCC----------CCeEEEEECcHHHHHHHHHHHHH
Confidence 348999999999999886 5699999999999999999998887643 23899999999999999999988
Q ss_pred hcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHH
Q 000114 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (2158)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~ 652 (2158)
+....++++..++|+.....+.....+|+|+||+.+ .+.. ...+.++++|||||+|++.. ..++.+
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~~~~I~i~T~~~l---~~~~--~~~~~~~~liIiDE~H~~~~---~~~~~i------ 245 (510)
T 2oca_A 180 YRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTV---VKQP--KEWFSQFGMMMNDECHLATG---KSISSI------ 245 (510)
T ss_dssp TTSSCGGGEEECGGGCCTTGGGCTTCSEEEEEHHHH---TTSC--GGGGGGEEEEEEETGGGCCH---HHHHHH------
T ss_pred hhcCCccceEEEecCCccccccccCCcEEEEeHHHH---hhch--hhhhhcCCEEEEECCcCCCc---ccHHHH------
Confidence 755556788999998776665556789999999953 3321 24677899999999999864 223322
Q ss_pred HHhhccccccEEEEccccCChH-H---HHHHHhccccCceEEecCC-----cccccceeEEEeeccC----------Chh
Q 000114 653 QIETTKEHIRLVGLSATLPNYE-D---VALFLRVNLEKGLFYFDNS-----YRPVPLSQQYIGIQVK----------KPL 713 (2158)
Q Consensus 653 ~~~~~~~~~riv~lSATlpn~~-d---v~~~l~~~~~~~~~~f~~~-----~rpv~l~~~~~~~~~~----------~~~ 713 (2158)
+.......++++||||+++.. + +..+++.. .+.+... -...+.....+.+... ...
T Consensus 246 -l~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (510)
T 2oca_A 246 -ISGLNNCMFKFGLSGSLRDGKANIMQYVGMFGEI----FKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQ 320 (510)
T ss_dssp -GGGCTTCCEEEEEESCGGGCSSCHHHHHHHHCSE----ECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHH
T ss_pred -HHhcccCcEEEEEEeCCCCCcccHHHhHHhhCCe----EEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchH
Confidence 233456779999999986431 1 22222211 1011110 0011111111111111 001
Q ss_pred HHHHH------hhHHHHHHHHHHh--CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccC
Q 000114 714 QRFQL------MNDLCYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVK 785 (2158)
Q Consensus 714 ~~~~~------l~~~~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 785 (2158)
..+.. -...+.+.+.... +++++||||+ ++.+..++..|.+.+
T Consensus 321 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~---------------------------- 371 (510)
T 2oca_A 321 EEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEY---------------------------- 371 (510)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTC----------------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcC----------------------------
Confidence 10100 1112233333332 2445666666 888888887776532
Q ss_pred cchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEec-hhhhhccCCCceEEEEecccccCCCCCccccCCHHHH
Q 000114 786 SNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVST-ATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDI 864 (2158)
Q Consensus 786 ~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT-~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2158)
..+..+||+|+..+|..+++.|++|.++||||| +++++|+|+|++++||. ++++. |+.+|
T Consensus 372 ---------~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~----~~~~~------s~~~~ 432 (510)
T 2oca_A 372 ---------DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVL----AHGVK------SKIIV 432 (510)
T ss_dssp ---------SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEE----SSCCC------SCCHH
T ss_pred ---------CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEE----eCCCC------CHHHH
Confidence 136788999999999999999999999999999 99999999999999998 44443 55689
Q ss_pred HHhhcccCCCCCC
Q 000114 865 MQMLGRAGRPQYD 877 (2158)
Q Consensus 865 ~Qr~GRAGR~g~d 877 (2158)
+||+|||||.|.+
T Consensus 433 ~Q~~GR~gR~g~~ 445 (510)
T 2oca_A 433 LQTIGRVLRKHGS 445 (510)
T ss_dssp HHHHHHHHTTTCC
T ss_pred HHHHhcccccCCC
Confidence 9999999998843
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=344.62 Aligned_cols=300 Identities=15% Similarity=0.191 Sum_probs=213.0
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhc
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~ 1435 (2158)
.+++++++||||||||+.+ +..+.. .+ +++|++|+|+||.|++++|++ . |+++..++|+...-...
T Consensus 154 ~rk~vlv~apTGSGKT~~a----l~~l~~---~~--~gl~l~PtR~LA~Qi~~~l~~-~----g~~v~lltG~~~~iv~T 219 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHA----IQKYFS---AK--SGVYCGPLKLLAHEIFEKSNA-A----GVPCDLVTGEERVTVQP 219 (677)
T ss_dssp CCEEEEEECCTTSSHHHHH----HHHHHH---SS--SEEEEESSHHHHHHHHHHHHH-T----TCCEEEECSSCEECCST
T ss_pred CCCEEEEEcCCCCCHHHHH----HHHHHh---cC--CeEEEeCHHHHHHHHHHHHHh-c----CCcEEEEECCeeEEecC
Confidence 3567999999999999844 333333 22 459999999999999999984 2 67899999986642111
Q ss_pred -ccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC-CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC
Q 000114 1436 -LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1436 -l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~-~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n 1513 (2158)
-...+++++|++.+. ..+.++++||||||++++. +|..++.++.++. ....+++++|||.+.
T Consensus 220 pGr~~~il~~T~e~~~----------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~------~~~i~il~~SAT~~~ 283 (677)
T 3rc3_A 220 NGKQASHVSCTVEMCS----------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLC------AEEVHLCGEPAAIDL 283 (677)
T ss_dssp TCCCCSEEEEEGGGCC----------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCC------EEEEEEEECGGGHHH
T ss_pred CCcccceeEecHhHhh----------hcccCCEEEEecceecCCccchHHHHHHHHccC------ccceEEEeccchHHH
Confidence 113589999987643 3577899999999999764 5666665554432 257899999999765
Q ss_pred hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHH
Q 000114 1514 AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVD 1593 (2158)
Q Consensus 1514 ~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~ 1593 (2158)
...+..+.+.. +.+....|+.++........ . + . ......+|||+|++.|+.++..
T Consensus 284 i~~l~~~~~~~----~~v~~~~r~~~l~~~~~~l~--~---------------l-~--~~~~g~iIf~~s~~~ie~la~~ 339 (677)
T 3rc3_A 284 VMELMYTTGEE----VEVRDYKRLTPISVLDHALE--S---------------L-D--NLRPGDCIVCFSKNDIYSVSRQ 339 (677)
T ss_dssp HHHHHHHHTCC----EEEEECCCSSCEEECSSCCC--S---------------G-G--GCCTTEEEECSSHHHHHHHHHH
T ss_pred HHHHHHhcCCc----eEEEEeeecchHHHHHHHHH--H---------------H-H--hcCCCCEEEEcCHHHHHHHHHH
Confidence 66666655433 11222234544443211110 0 0 0 1134569999999999988866
Q ss_pred HHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHc--CCceEEEecCcccc
Q 000114 1594 LMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA--GKIKVCVMSSSMCW 1671 (2158)
Q Consensus 1594 L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~--g~i~VLVaT~~la~ 1671 (2158)
|.. .+.+|+++||+|++++|..+++.|++ |.++|||||+++++
T Consensus 340 L~~-----------------------------------~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~ 384 (677)
T 3rc3_A 340 IEI-----------------------------------RGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGM 384 (677)
T ss_dssp HHH-----------------------------------TTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGS
T ss_pred HHh-----------------------------------cCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHC
Confidence 632 24679999999999999999999999 99999999999999
Q ss_pred ccCCCccEEEEecceeec--CCC-CcCcCCCHHHHHHhhccCCCCCCC-CceEEEEEecCChHHHHHHHh-hCCCcccc
Q 000114 1672 GVPLTAHLVVVMGTQYYD--GQE-NAHTDYPVTDLLQMMGHASRPLLD-NSGKCVILCHAPRKEYYKKFL-YDAFPVES 1745 (2158)
Q Consensus 1672 Gvdlp~~~vVI~gt~~yd--~~~-~~~~~~s~~~~lQr~GRaGR~g~d-~~G~~iil~~~~~~~~~~k~l-~~~~piES 1745 (2158)
|||++...||+.|...|+ +.. ....|++..+|+||+|||||.|.+ ..|.|++++.... ..+++++ ..+.++++
T Consensus 385 GlDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~-~~~~~~~~~~~~~i~~ 462 (677)
T 3rc3_A 385 GLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDL-SLLKEILKRPVDPIRA 462 (677)
T ss_dssp SCCCCBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHH-HHHHHHHHSCCCCCCC
T ss_pred CcCcCccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchH-HHHHHHHhcCcchhhh
Confidence 999987888888877642 211 135689999999999999999865 3588888876644 3455555 46777777
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-28 Score=323.93 Aligned_cols=355 Identities=16% Similarity=0.140 Sum_probs=236.0
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
|| .|+|+|.++++.++.|+ |+.|+||+|||++|.+|++..... +. .+++|+||++||.|.++.+. .+...
T Consensus 81 G~-~pt~VQ~~~ip~ll~G~---Iaea~TGeGKTlaf~LP~~l~aL~---g~--~vlVltptreLA~qd~e~~~-~l~~~ 150 (844)
T 1tf5_A 81 GM-FPFKVQLMGGVALHDGN---IAEMKTGEGKTLTSTLPVYLNALT---GK--GVHVVTVNEYLASRDAEQMG-KIFEF 150 (844)
T ss_dssp SC-CCCHHHHHHHHHHHTTS---EEECCTTSCHHHHHHHHHHHHHTT---SS--CEEEEESSHHHHHHHHHHHH-HHHHH
T ss_pred CC-CCcHHHHHhhHHHhCCC---EEEccCCcHHHHHHHHHHHHHHHc---CC--CEEEEeCCHHHHHHHHHHHH-HHHhh
Confidence 69 99999999999998865 999999999999999999844322 33 79999999999999998887 56666
Q ss_pred CCcEEEEEcCCcchhhhc-ccCCcEEEeCHHHH-HHHHhhh----hccccccceeEEEeccccccc-CCC-CCh------
Q 000114 1418 LGMRVVELTGETAMDLKL-LEKGQIIISTPEKW-DALSRRW----KQRKYVQQVSLFIIDELHLIG-GQG-GPV------ 1483 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~~~~-l~~~~IIV~TPe~l-~~l~r~~----~~~~~l~~v~llIiDEaH~l~-~~~-g~~------ 1483 (2158)
+|++|+.+.|+.+...+. ...++|+|+||+++ .++++.. .....++.+.++|+||||.++ +.. .|.
T Consensus 151 lgl~v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~ 230 (844)
T 1tf5_A 151 LGLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQA 230 (844)
T ss_dssp TTCCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEE
T ss_pred cCCeEEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCc
Confidence 799999999998765433 33579999999999 5555542 123457889999999999876 431 110
Q ss_pred --HHHHHHHHHHHHhhcC---------CCceEE-----------------EeccCCCC-hHHHHH-----Hh-ccCCCce
Q 000114 1484 --LEVIVSRMRYIASQVE---------NKIRIV-----------------ALSTSLAN-AKDLGE-----WI-GATSHGL 1528 (2158)
Q Consensus 1484 --~e~~isrl~~i~~~~~---------~~~riV-----------------~lSATl~n-~~dl~~-----wl-~~~~~~i 1528 (2158)
-..+...+..+..+++ +..++. ++|||.+. ...+.. .+ ......+
T Consensus 231 ~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYi 310 (844)
T 1tf5_A 231 AKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYV 310 (844)
T ss_dssp ECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEE
T ss_pred ccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceE
Confidence 0124455566666664 345555 77888642 122211 11 1111111
Q ss_pred Ee---------c--------------------------------------------------------------------
Q 000114 1529 FN---------F-------------------------------------------------------------------- 1531 (2158)
Q Consensus 1529 ~~---------f-------------------------------------------------------------------- 1531 (2158)
+. |
T Consensus 311 v~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l 390 (844)
T 1tf5_A 311 VEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNM 390 (844)
T ss_dssp EETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred EecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCC
Confidence 00 0
Q ss_pred ----CCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCccccc
Q 000114 1532 ----PPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSA 1607 (2158)
Q Consensus 1532 ----~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~ 1607 (2158)
.|..+|+.-. .....-......+. ......+......+.|+||||+|++.|+.++..|..
T Consensus 391 ~vv~IPtn~p~~r~-d~~d~v~~~~~~K~----~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~----------- 454 (844)
T 1tf5_A 391 QVVTIPTNRPVVRD-DRPDLIYRTMEGKF----KAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKN----------- 454 (844)
T ss_dssp CEEECCCSSCCCCE-ECCCEEESSHHHHH----HHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHT-----------
T ss_pred ceEEecCCCCcccc-cCCcEEEeCHHHHH----HHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHH-----------
Confidence 0000110000 00000000000111 011222222224678999999999999999976632
Q ss_pred ccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCC--------ccE
Q 000114 1608 FLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLT--------AHL 1679 (2158)
Q Consensus 1608 ~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp--------~~~ 1679 (2158)
.+..+..+||+++..+|..+.+.|+.| .|+|||++++||+|++ +..
T Consensus 455 ------------------------~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl 508 (844)
T 1tf5_A 455 ------------------------KGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGL 508 (844)
T ss_dssp ------------------------TTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSE
T ss_pred ------------------------CCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCc
Confidence 244578899999999988777766665 6999999999999999 788
Q ss_pred EEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChH-------HHHHHHh-----hCCCccccch
Q 000114 1680 VVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRK-------EYYKKFL-----YDAFPVESHL 1747 (2158)
Q Consensus 1680 vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~-------~~~~k~l-----~~~~piES~L 1747 (2158)
+|| |++.|.+...|.||+||+||.| ..|.++.+++..+. +...+.+ .+..++++.+
T Consensus 509 ~VI----------n~d~p~s~r~y~hr~GRTGRqG--~~G~s~~~vs~eD~l~r~f~~~~~~~~~~~~~~~~~~~i~~~~ 576 (844)
T 1tf5_A 509 AVV----------GTERHESRRIDNQLRGRSGRQG--DPGITQFYLSMEDELMRRFGAERTMAMLDRFGMDDSTPIQSKM 576 (844)
T ss_dssp EEE----------ESSCCSSHHHHHHHHTTSSGGG--CCEEEEEEEETTSSGGGSSHHHHHHHHHHHHTCCSSSCBCCHH
T ss_pred EEE----------EecCCCCHHHHHhhcCccccCC--CCCeEEEEecHHHHHHHHHhHHHHHHHHHhcCCCCccccchHH
Confidence 999 7788899999999999999998 78998888765431 2233332 3467888877
Q ss_pred hhHHHHHHH
Q 000114 1748 HHFLHDNFN 1756 (2158)
Q Consensus 1748 ~~~l~d~l~ 1756 (2158)
.....+...
T Consensus 577 ~~~~i~~aq 585 (844)
T 1tf5_A 577 VSRAVESSQ 585 (844)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655444433
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.6e-29 Score=325.79 Aligned_cols=306 Identities=17% Similarity=0.171 Sum_probs=213.2
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g 1419 (2158)
..|+|+|.++++.++.+ .++++++|||||||++|++++...+.. ..+ +++||+|+++|+.|++++++ +++...+
T Consensus 112 ~~l~~~Q~~ai~~~~~~-~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~--~vlvl~P~~~L~~Q~~~~~~-~~~~~~~ 185 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYYLEN--YEG--KILIIVPTTALTTQMADDFV-DYRLFSH 185 (510)
T ss_dssp ECCCHHHHHHHHHHHHH-SEEEEECCSTTTHHHHHHHHHHHHHHH--CSS--EEEEEESSHHHHHHHHHHHH-HTTSSCG
T ss_pred CCCCHHHHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHHHHHHhC--CCC--eEEEEECcHHHHHHHHHHHH-HhhcCCc
Confidence 48999999999999875 569999999999999999998887765 234 99999999999999999997 6655556
Q ss_pred cEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcC
Q 000114 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVE 1499 (2158)
Q Consensus 1420 ~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~ 1499 (2158)
.++..++|+.....+....++|+|+||+.+. +. ....++++++|||||+|++.. ..+..+...+.
T Consensus 186 ~~v~~~~~~~~~~~~~~~~~~I~i~T~~~l~---~~--~~~~~~~~~liIiDE~H~~~~----------~~~~~il~~~~ 250 (510)
T 2oca_A 186 AMIKKIGGGASKDDKYKNDAPVVVGTWQTVV---KQ--PKEWFSQFGMMMNDECHLATG----------KSISSIISGLN 250 (510)
T ss_dssp GGEEECGGGCCTTGGGCTTCSEEEEEHHHHT---TS--CGGGGGGEEEEEEETGGGCCH----------HHHHHHGGGCT
T ss_pred cceEEEecCCccccccccCCcEEEEeHHHHh---hc--hhhhhhcCCEEEEECCcCCCc----------ccHHHHHHhcc
Confidence 7889999987766555567799999999643 22 234578899999999999863 22334445556
Q ss_pred CCceEEEeccCCCChH----HHHHHhccCCCceEecCCCC-----cccccEEEEecccc----------cchHHHHHh--
Q 000114 1500 NKIRIVALSTSLANAK----DLGEWIGATSHGLFNFPPGV-----RPVPLEIHIQGVDI----------TNFEARMQA-- 1558 (2158)
Q Consensus 1500 ~~~riV~lSATl~n~~----dl~~wl~~~~~~i~~f~~~~-----rpv~l~~~i~~~~~----------~~~~~~~~~-- 1558 (2158)
...++++||||+++.. .+..+++.. ++.+.+.. ...+..+....... ..+...+..
T Consensus 251 ~~~~~l~lSATp~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (510)
T 2oca_A 251 NCMFKFGLSGSLRDGKANIMQYVGMFGEI---FKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIIT 327 (510)
T ss_dssp TCCEEEEEESCGGGCSSCHHHHHHHHCSE---ECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHH
T ss_pred cCcEEEEEEeCCCCCcccHHHhHHhhCCe---EEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHh
Confidence 6789999999996531 223333321 22222210 01111111111111 122221110
Q ss_pred cC----hHHHHHHHHhHhcCC-CEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhc
Q 000114 1559 MT----KPTFTAIVQHAKNEK-PALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLR 1633 (2158)
Q Consensus 1559 ~~----k~~~~~i~~~~~~~~-~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~ 1633 (2158)
.. ......+......++ ++||||+ .+.|..++..|.. .+
T Consensus 328 ~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~-----------------------------------~~ 371 (510)
T 2oca_A 328 GLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKN-----------------------------------EY 371 (510)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHT-----------------------------------TC
T ss_pred ccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHH-----------------------------------cC
Confidence 01 111222223223334 4566666 8888777655522 11
Q ss_pred ccEEEecCCCCHHHHHHHHHHHHcCCceEEEec-CccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCC
Q 000114 1634 HGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMS-SSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASR 1712 (2158)
Q Consensus 1634 ~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT-~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR 1712 (2158)
..+..+||+|+..+|..+++.|++|+++||||| +++++|+|+|++.+|| +...+.+..+|+||+|||||
T Consensus 372 ~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi----------~~~~~~s~~~~~Q~~GR~gR 441 (510)
T 2oca_A 372 DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVV----------LAHGVKSKIIVLQTIGRVLR 441 (510)
T ss_dssp SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEE----------ESSCCCSCCHHHHHHHHHHT
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEE----------EeCCCCCHHHHHHHHhcccc
Confidence 258999999999999999999999999999999 9999999999999998 34556688999999999999
Q ss_pred CCC
Q 000114 1713 PLL 1715 (2158)
Q Consensus 1713 ~g~ 1715 (2158)
.|.
T Consensus 442 ~g~ 444 (510)
T 2oca_A 442 KHG 444 (510)
T ss_dssp TTC
T ss_pred cCC
Confidence 883
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-29 Score=326.49 Aligned_cols=300 Identities=14% Similarity=0.084 Sum_probs=201.0
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
|+.+++|+|. +++.+++++++++++||||||||++|++|++..+.. .+. +++|++||++|+.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--~~~--~~lvl~Ptr~La~Q~~~~l~------ 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--RRL--RTLILAPTRVVAAEMEEALR------ 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--TTC--CEEEEESSHHHHHHHHHHTT------
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--cCC--cEEEECCCHHHHHHHHHHhc------
Confidence 5778999985 899999988888999999999999999999987765 233 89999999999999998764
Q ss_pred CCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhh
Q 000114 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQ 1497 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~ 1497 (2158)
|..+....+.... .......|.++|++.+...+.. ...++++++||+||||++. .........+... .
T Consensus 70 -g~~v~~~~~~~~~--~~~~~~~i~~~t~~~l~~~l~~---~~~l~~~~~iViDEah~~~----~~~~~~~~~~~~~--~ 137 (451)
T 2jlq_A 70 -GLPIRYQTPAVKS--DHTGREIVDLMCHATFTTRLLS---STRVPNYNLIVMDEAHFTD----PCSVAARGYISTR--V 137 (451)
T ss_dssp -TSCEEECCTTCSC--CCCSSCCEEEEEHHHHHHHHHH---CSCCCCCSEEEEETTTCCS----HHHHHHHHHHHHH--H
T ss_pred -Cceeeeeeccccc--cCCCCceEEEEChHHHHHHhhC---cccccCCCEEEEeCCccCC----cchHHHHHHHHHh--h
Confidence 3444332222111 1223447999999987655443 3567899999999999872 1122222222111 1
Q ss_pred cCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCE
Q 000114 1498 VENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPA 1577 (2158)
Q Consensus 1498 ~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~ 1577 (2158)
...+.++++||||+++. +..++.... .+.. .....+...+. . .+..+. ...+++
T Consensus 138 ~~~~~~~i~~SAT~~~~--~~~~~~~~~-~~~~------------~~~~~p~~~~~----~----~~~~l~---~~~~~~ 191 (451)
T 2jlq_A 138 EMGEAAAIFMTATPPGS--TDPFPQSNS-PIED------------IEREIPERSWN----T----GFDWIT---DYQGKT 191 (451)
T ss_dssp HTTSCEEEEECSSCTTC--CCSSCCCSS-CEEE------------EECCCCSSCCS----S----SCHHHH---HCCSCE
T ss_pred cCCCceEEEEccCCCcc--chhhhcCCC-ceEe------------cCccCCchhhH----H----HHHHHH---hCCCCE
Confidence 24579999999999652 111111110 0000 00111111110 0 011111 246799
Q ss_pred EEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHc
Q 000114 1578 LVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEA 1657 (2158)
Q Consensus 1578 IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~ 1657 (2158)
||||+|++.|+.++..|.. .+..+..+|+.+ +..+++.|++
T Consensus 192 lVF~~s~~~a~~l~~~L~~-----------------------------------~g~~~~~lh~~~----~~~~~~~f~~ 232 (451)
T 2jlq_A 192 VWFVPSIKAGNDIANCLRK-----------------------------------SGKRVIQLSRKT----FDTEYPKTKL 232 (451)
T ss_dssp EEECSSHHHHHHHHHHHHT-----------------------------------TTCCEEEECTTT----HHHHGGGGGS
T ss_pred EEEcCCHHHHHHHHHHHHH-----------------------------------cCCeEEECCHHH----HHHHHHhhcc
Confidence 9999999999999876632 134577888865 4678999999
Q ss_pred CCceEEEecCccccccCCCccEEEE-ecc---eeec--CCCCc----CcCCCHHHHHHhhccCCCCCCCCceEEEEEecC
Q 000114 1658 GKIKVCVMSSSMCWGVPLTAHLVVV-MGT---QYYD--GQENA----HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHA 1727 (2158)
Q Consensus 1658 g~i~VLVaT~~la~Gvdlp~~~vVI-~gt---~~yd--~~~~~----~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~ 1727 (2158)
|+++|||||+++++|+|+|+ .+|| .|. ..|+ +.... ..|.+..+|+||+|||||.| ...|.|++++..
T Consensus 233 g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g-~~~g~~~~~~~~ 310 (451)
T 2jlq_A 233 TDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNP-AQEDDQYVFSGD 310 (451)
T ss_dssp SCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCT-TCCCEEEEECSC
T ss_pred CCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCC-CCCccEEEEeCC
Confidence 99999999999999999999 6666 221 1121 11111 17889999999999999988 337888888754
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-28 Score=317.60 Aligned_cols=353 Identities=16% Similarity=0.130 Sum_probs=224.6
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
|+ .|+++|..+++.++.|+ ++.++||+|||++|.+|++..... +..+++++||++||.|.++.+.
T Consensus 72 g~-~p~~VQ~~~i~~ll~G~---Iaem~TGsGKTlaf~LP~l~~~l~-----------g~~vlVltPTreLA~Q~~e~~~ 136 (853)
T 2fsf_A 72 GM-RHFDVQLLGGMVLNERC---IAEMRTGEGKTLTATLPAYLNALT-----------GKGVHVVTVNDYLAQRDAENNR 136 (853)
T ss_dssp SC-CCCHHHHHHHHHHHSSE---EEECCTTSCHHHHHHHHHHHHHTT-----------SSCCEEEESSHHHHHHHHHHHH
T ss_pred CC-CCChHHHhhcccccCCe---eeeecCCchHHHHHHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHHHH
Confidence 44 89999999999988874 999999999999999999865432 2369999999999999999999
Q ss_pred hhcccCCcEEEEEeCCCccCHhh-hccccEEEcchhHH--HHHHhccC---CCccccccceEEeecccccc-cC-Ch---
Q 000114 572 NRLQMYDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLLH-DN-RG--- 640 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~-~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~lIIiDEaH~l~-d~-rg--- 640 (2158)
.++..+|++|+.++|+.+...+. ..+++|+|+||+++ |.+..+.. ....++.++++|+||||.++ |. +.
T Consensus 137 ~l~~~lgl~v~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLI 216 (853)
T 2fsf_A 137 PLFEFLGLTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLI 216 (853)
T ss_dssp HHHHHTTCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEE
T ss_pred HHHHhcCCeEEEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCccccc
Confidence 99999999999999998754332 34789999999995 66665431 22456889999999999887 42 21
Q ss_pred ------------hhHHHHHHHHHHHH-------------hhccccccEE------------------------EEccccC
Q 000114 641 ------------PVLESIVARTVRQI-------------ETTKEHIRLV------------------------GLSATLP 671 (2158)
Q Consensus 641 ------------~~le~iv~r~~~~~-------------~~~~~~~riv------------------------~lSATlp 671 (2158)
..+..++..+.... ..-....+++ ++|||.+
T Consensus 217 iSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~ 296 (853)
T 2fsf_A 217 ISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANI 296 (853)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred ccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccc
Confidence 23444544442100 0000122221 6788865
Q ss_pred C-hHHHHHHHhc-------------------------------------------------cccC---------------
Q 000114 672 N-YEDVALFLRV-------------------------------------------------NLEK--------------- 686 (2158)
Q Consensus 672 n-~~dv~~~l~~-------------------------------------------------~~~~--------------- 686 (2158)
. ...+...+.+ ....
T Consensus 297 ~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y 376 (853)
T 2fsf_A 297 MLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLY 376 (853)
T ss_dssp ------------------------------------------------------------CCCCCEEEEEEEHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhh
Confidence 2 1111110000 0000
Q ss_pred ----------------------ceEEecCCcccccceeE--EEeeccCChhHHHHHhhHHHHHHHHHH-hCCCeEEEEec
Q 000114 687 ----------------------GLFYFDNSYRPVPLSQQ--YIGIQVKKPLQRFQLMNDLCYEKVVAV-AGKHQVLIFVH 741 (2158)
Q Consensus 687 ----------------------~~~~f~~~~rpv~l~~~--~~~~~~~~~~~~~~~l~~~~~~~i~~~-~~~~~vLVFv~ 741 (2158)
--+..-+..+|+.-... ++. .....++..+. ..+.+. ..+.|+||||+
T Consensus 377 ~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~---~~~~~K~~al~----~~i~~~~~~gqpvLVft~ 449 (853)
T 2fsf_A 377 EKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVY---MTEAEKIQAII----EDIKERTAKGQPVLVGTI 449 (853)
T ss_dssp SEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEE---SSHHHHHHHHH----HHHHHHHTTTCCEEEEES
T ss_pred hhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEE---eCHHHHHHHHH----HHHHHHhcCCCCEEEEEC
Confidence 00011122223221110 111 11223333322 223333 34679999999
Q ss_pred ChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCc
Q 000114 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821 (2158)
Q Consensus 742 sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i 821 (2158)
|+..++.++..|...++.. .++||.+...+|..+.+.|+.|
T Consensus 450 sie~se~Ls~~L~~~gi~~-------------------------------------~vLnak~~~rEa~iia~agr~G-- 490 (853)
T 2fsf_A 450 SIEKSELVSNELTKAGIKH-------------------------------------NVLNAKFHANEAAIVAQAGYPA-- 490 (853)
T ss_dssp SHHHHHHHHHHHHHTTCCC-------------------------------------EECCTTCHHHHHHHHHTTTSTT--
T ss_pred cHHHHHHHHHHHHHCCCCE-------------------------------------EEecCChhHHHHHHHHhcCCCC--
Confidence 9999999999999877544 3459999999999999999988
Q ss_pred eEEEechhhhhccCCCc--------------------------------e-----EEEEecccccCCCCCccccCCHHHH
Q 000114 822 QVLVSTATLAWGVNLPA--------------------------------H-----TVIIKGTQIYNPEKGAWTELSPLDI 864 (2158)
Q Consensus 822 ~VLVaT~tla~GVdlP~--------------------------------v-----~vVI~~~~~yd~~~g~~~~~s~~~~ 864 (2158)
.|+|||++++||+|++. | .+||+ |+.+. |...|
T Consensus 491 ~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~----te~pe------s~riy 560 (853)
T 2fsf_A 491 AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIG----TERHE------SRRID 560 (853)
T ss_dssp CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEE----SSCCS------SHHHH
T ss_pred eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEE----ccCCC------CHHHH
Confidence 69999999999999997 3 68999 66554 77899
Q ss_pred HHhhcccCCCCCCCccEEEEEcCCCcH-------HHHHHhh-----cCCCcccchhhHhhHHHHH
Q 000114 865 MQMLGRAGRPQYDSYGEGIIITGHSEL-------RYYLSLM-----NQQLPIESQFVSKLADQLN 917 (2158)
Q Consensus 865 ~Qr~GRAGR~g~d~~G~~iil~~~~~~-------~~y~~ll-----~~~~pieS~l~~~l~d~ln 917 (2158)
.||+||+||.| ..|.++.+++..+. ..+..++ ....||++....+..+...
T Consensus 561 ~qr~GRTGRqG--d~G~s~~fls~eD~l~r~f~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aq 623 (853)
T 2fsf_A 561 NQLRGRSGRQG--DAGSSRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVTKAIANAQ 623 (853)
T ss_dssp HHHHTTSSGGG--CCEEEEEEEETTSGGGGTTCCHHHHTTGGGGCCCTTCCCCCHHHHHHHHHHH
T ss_pred HhhccccccCC--CCeeEEEEecccHHHHHHhhHHHHHHHHHhhCCCCccccchHHHHHHHHHHH
Confidence 99999999987 77999888776541 2222222 2346788888776655443
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-29 Score=325.71 Aligned_cols=302 Identities=20% Similarity=0.199 Sum_probs=205.0
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhh
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~ 573 (2158)
..|+|+|.++++.++.++ ++++++|||+|||++|++++... +.++||++|+++|+.|++++|.+
T Consensus 92 ~~l~~~Q~~ai~~i~~~~-~~ll~~~TGsGKT~~~l~~i~~~--------------~~~~Lvl~P~~~L~~Q~~~~~~~- 155 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDK-RGCIVLPTGSGKTHVAMAAINEL--------------STPTLIVVPTLALAEQWKERLGI- 155 (472)
T ss_dssp CCBCHHHHHHHHHHTTTT-EEEEECCTTSCHHHHHHHHHHHH--------------CSCEEEEESSHHHHHHHHHHGGG-
T ss_pred CCcCHHHHHHHHHHHhcC-CEEEEeCCCCCHHHHHHHHHHHc--------------CCCEEEEECCHHHHHHHHHHHHh-
Confidence 379999999999988764 59999999999999999988764 12699999999999999999988
Q ss_pred cccCCcE-EEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHH
Q 000114 574 LQMYDVK-VRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (2158)
Q Consensus 574 ~~~~gi~-v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~ 652 (2158)
+ |++ ++.++|+... ..+|+|+||+.+...... ...++++|||||+|.+.+.. +..++.
T Consensus 156 ~---~~~~v~~~~g~~~~------~~~Ivv~T~~~l~~~~~~-----~~~~~~liIvDEaH~~~~~~---~~~~~~---- 214 (472)
T 2fwr_A 156 F---GEEYVGEFSGRIKE------LKPLTVSTYDSAYVNAEK-----LGNRFMLLIFDEVHHLPAES---YVQIAQ---- 214 (472)
T ss_dssp G---CGGGEEEBSSSCBC------CCSEEEEEHHHHHHTHHH-----HTTTCSEEEEETGGGTTSTT---THHHHH----
T ss_pred C---CCcceEEECCCcCC------cCCEEEEEcHHHHHHHHH-----hcCCCCEEEEECCcCCCChH---HHHHHH----
Confidence 3 678 8999987653 478999999986333221 22458999999999987632 222211
Q ss_pred HHhhccccccEEEEccccCChH----HHHHHHhccccC-ceEEecCCcccccceeEEEeeccCCh---------------
Q 000114 653 QIETTKEHIRLVGLSATLPNYE----DVALFLRVNLEK-GLFYFDNSYRPVPLSQQYIGIQVKKP--------------- 712 (2158)
Q Consensus 653 ~~~~~~~~~riv~lSATlpn~~----dv~~~l~~~~~~-~~~~f~~~~rpv~l~~~~~~~~~~~~--------------- 712 (2158)
.....++++||||+++.+ .+..+++..... ....+...+-+ +.....+.+.....
T Consensus 215 ----~~~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (472)
T 2fwr_A 215 ----MSIAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLA-KYTIKRIFVPLAEDERVEYEKREKVYKQF 289 (472)
T ss_dssp ----TCCCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCC-SEEECCEEECCCHHHHHHTTTTTHHHHSC
T ss_pred ----hcCCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCC-CeEEEEEEcCCCHHHHHHHHHHHHHHHHH
Confidence 224678899999987422 233333211000 00000000000 00000000000000
Q ss_pred ------------------------------h---HHHH-------HhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHH
Q 000114 713 ------------------------------L---QRFQ-------LMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARA 752 (2158)
Q Consensus 713 ------------------------------~---~~~~-------~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~ 752 (2158)
. .... .-...+.+ ++....++++||||++++.+..++..
T Consensus 290 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~-~l~~~~~~k~lvF~~~~~~~~~l~~~ 368 (472)
T 2fwr_A 290 LRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLRE-ILERHRKDKIIIFTRHNELVYRISKV 368 (472)
T ss_dssp SSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHH-HHHHTSSSCBCCBCSCHHHHHHHHHH
T ss_pred HHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHH-HHHhCCCCcEEEEECCHHHHHHHHHH
Confidence 0 0000 00011222 22334578999999999998888775
Q ss_pred HHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhh
Q 000114 753 IRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAW 832 (2158)
Q Consensus 753 L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~ 832 (2158)
|. +..+||+++..+|..+++.|++|.++|||||+++++
T Consensus 369 l~------------------------------------------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~ 406 (472)
T 2fwr_A 369 FL------------------------------------------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDE 406 (472)
T ss_dssp TT------------------------------------------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCS
T ss_pred hC------------------------------------------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhc
Confidence 41 334699999999999999999999999999999999
Q ss_pred ccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCC-CccEEEEEcCCCc
Q 000114 833 GVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD-SYGEGIIITGHSE 890 (2158)
Q Consensus 833 GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d-~~G~~iil~~~~~ 890 (2158)
|+|+|++++||+ |+++. |+..|+||+|||||.|.+ ....+|.+++.+.
T Consensus 407 Gldlp~~~~Vi~----~~~~~------s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 407 GIDVPDANVGVI----MSGSG------SAREYIQRLGRILRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp SSCSCCBSEEEE----ECCSS------CCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred CcccccCcEEEE----ECCCC------CHHHHHHHHhhccCCCCCCceEEEEEEEeCCC
Confidence 999999999999 55553 677899999999999854 4455655666543
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-29 Score=325.20 Aligned_cols=289 Identities=16% Similarity=0.164 Sum_probs=183.4
Q ss_pred HHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEE
Q 000114 505 KSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVREL 584 (2158)
Q Consensus 505 ~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l 584 (2158)
+.++.++++++++||||||||++|++|+++.+... +.++||++||++||.|+++.+. |..+...
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~----------~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~ 78 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ----------RLRTAVLAPTRVVAAEMAEALR------GLPVRYQ 78 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT----------TCCEEEEECSHHHHHHHHHHTT------TSCEEEC
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC----------CCcEEEECchHHHHHHHHHHhc------CceEeEE
Confidence 55677888999999999999999999999887642 3479999999999999999886 3334333
Q ss_pred eCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEE
Q 000114 585 SGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLV 664 (2158)
Q Consensus 585 ~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv 664 (2158)
.+... ........+.++|.+.+. +.......++++++|||||||.+.......+..+..+ ......|+|
T Consensus 79 ~~~~~--~~~t~~~~i~~~~~~~l~---~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~------~~~~~~~~i 147 (459)
T 2z83_A 79 TSAVQ--REHQGNEIVDVMCHATLT---HRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATK------VELGEAAAI 147 (459)
T ss_dssp C----------CCCSEEEEEHHHHH---HHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHH------HHTTSCEEE
T ss_pred ecccc--cCCCCCcEEEEEchHHHH---HHhhccccccCCcEEEEECCccCCchhhHHHHHHHHH------hccCCccEE
Confidence 22211 111234457778887642 2221224578899999999997521111112111111 123679999
Q ss_pred EEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChH
Q 000114 665 GLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRK 744 (2158)
Q Consensus 665 ~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~ 744 (2158)
+||||++.. +..+.. ...|+ ......+........+ . .+.+ .++++||||+|++
T Consensus 148 l~SAT~~~~--~~~~~~------------~~~pi--~~~~~~~~~~~~~~~~----~----~l~~--~~~~~LVF~~s~~ 201 (459)
T 2z83_A 148 FMTATPPGT--TDPFPD------------SNAPI--HDLQDEIPDRAWSSGY----E----WITE--YAGKTVWFVASVK 201 (459)
T ss_dssp EECSSCTTC--CCSSCC------------CSSCE--EEEECCCCSSCCSSCC----H----HHHH--CCSCEEEECSCHH
T ss_pred EEEcCCCcc--hhhhcc------------CCCCe--EEecccCCcchhHHHH----H----HHHh--cCCCEEEEeCChH
Confidence 999999742 111111 11111 1100011111111111 1 1111 2679999999999
Q ss_pred HHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEE
Q 000114 745 ETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVL 824 (2158)
Q Consensus 745 ~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VL 824 (2158)
.++.++..|...+. .+..+||. +|..+++.|++|.++||
T Consensus 202 ~~~~l~~~L~~~g~-------------------------------------~v~~lh~~----~R~~~~~~f~~g~~~iL 240 (459)
T 2z83_A 202 MGNEIAMCLQRAGK-------------------------------------KVIQLNRK----SYDTEYPKCKNGDWDFV 240 (459)
T ss_dssp HHHHHHHHHHHTTC-------------------------------------CEEEESTT----CCCCCGGGSSSCCCSEE
T ss_pred HHHHHHHHHHhcCC-------------------------------------cEEecCHH----HHHHHHhhccCCCceEE
Confidence 99999999876532 24556774 78889999999999999
Q ss_pred EechhhhhccCCCceEEEEecccc------cCCCCC----ccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCC
Q 000114 825 VSTATLAWGVNLPAHTVIIKGTQI------YNPEKG----AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2158)
Q Consensus 825 VaT~tla~GVdlP~v~vVI~~~~~------yd~~~g----~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2158)
|||+++++|||+|+ ++||+.... |+.... .-.+.|..+|+||+|||||.|. ..|.+++++...
T Consensus 241 VaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~-~~G~~~~~~~~~ 313 (459)
T 2z83_A 241 ITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPN-QVGDEYHYGGAT 313 (459)
T ss_dssp EESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTT-CCCEEEEECSCC
T ss_pred EECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCC-CCCeEEEEEccc
Confidence 99999999999999 888873311 111000 0034589999999999999873 269999998775
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-29 Score=320.81 Aligned_cols=271 Identities=17% Similarity=0.153 Sum_probs=173.6
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCC
Q 000114 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD 587 (2158)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd 587 (2158)
+..++|++++||||||||++|++|+++.+... +.+++|++||++||.|+++.+... .+...++.
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~----------~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~ 68 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECARR----------RLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQA 68 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTTTS------CEEEESSC
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc----------CCeEEEEcchHHHHHHHHHHHhcC------CeEEeccc
Confidence 45567899999999999999999999977653 348999999999999999988642 23332222
Q ss_pred CccCHhhhccccEEEcchhHH-H-----HHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccc
Q 000114 588 QTLTRQQIEETQIIVTTPEKW-D-----IITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHI 661 (2158)
Q Consensus 588 ~~~~~~~~~~~~IiV~TPekl-d-----~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~ 661 (2158)
.. .|+||+++ + .+.+.......++++++|||||+|++...+...+..+ .... ...+.
T Consensus 69 ~~-----------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~----~~~~--~~~~~ 131 (440)
T 1yks_A 69 FS-----------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWA----AHRA--RANES 131 (440)
T ss_dssp CC-----------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHH----HHHH--HTTSC
T ss_pred ce-----------eccCCccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHH----HHHh--ccCCc
Confidence 11 36677653 1 2222233334578899999999999821222222211 1111 13579
Q ss_pred cEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEec
Q 000114 662 RLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVH 741 (2158)
Q Consensus 662 riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~ 741 (2158)
++++||||+++. +..+.. ...+ +......+........ +..+.+ .++++||||+
T Consensus 132 ~~l~~SAT~~~~--~~~~~~------------~~~~--~~~~~~~~~~~~~~~~--------~~~l~~--~~~~~lVF~~ 185 (440)
T 1yks_A 132 ATILMTATPPGT--SDEFPH------------SNGE--IEDVQTDIPSEPWNTG--------HDWILA--DKRPTAWFLP 185 (440)
T ss_dssp EEEEECSSCTTC--CCSSCC------------CSSC--EEEEECCCCSSCCSSS--------CHHHHH--CCSCEEEECS
T ss_pred eEEEEeCCCCch--hhhhhh------------cCCC--eeEeeeccChHHHHHH--------HHHHHh--cCCCEEEEeC
Confidence 999999998742 111111 0111 1111111111111111 111222 2679999999
Q ss_pred ChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCc
Q 000114 742 SRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV 821 (2158)
Q Consensus 742 sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i 821 (2158)
+++.+..++..|...+ ..++.+|| .+|..+++.|++|++
T Consensus 186 s~~~a~~l~~~L~~~~-------------------------------------~~v~~lhg----~~R~~~~~~F~~g~~ 224 (440)
T 1yks_A 186 SIRAANVMAASLRKAG-------------------------------------KSVVVLNR----KTFEREYPTIKQKKP 224 (440)
T ss_dssp CHHHHHHHHHHHHHTT-------------------------------------CCEEECCS----SSCC--------CCC
T ss_pred CHHHHHHHHHHHHHcC-------------------------------------CCEEEecc----hhHHHHHhhhcCCCc
Confidence 9999999999887642 23677898 468899999999999
Q ss_pred eEEEechhhhhccCCCceEEEEecccc---------------cCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEc
Q 000114 822 QVLVSTATLAWGVNLPAHTVIIKGTQI---------------YNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIIT 886 (2158)
Q Consensus 822 ~VLVaT~tla~GVdlP~v~vVI~~~~~---------------yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~ 886 (2158)
+|||||+++++|||+| +++||+.... |+. +.+..+|+||+|||||.| +..|.|++++
T Consensus 225 ~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~------p~~~~~~~Qr~GR~GR~g-~~~g~~~~l~ 296 (440)
T 1yks_A 225 DFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPL------RISASSAAQRRGRIGRNP-NRDGDSYYYS 296 (440)
T ss_dssp SEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEE------ECCHHHHHHHHTTSSCCT-TCCCEEEEEC
T ss_pred eEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecccc------ccCHHHHHHhccccCCCC-CCCceEEEEe
Confidence 9999999999999999 9988863221 333 358999999999999963 2579999996
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-29 Score=334.07 Aligned_cols=298 Identities=15% Similarity=0.131 Sum_probs=202.3
Q ss_pred CCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 493 MTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 493 ~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
...++|+|+.+++.+ ..+++++++||||||||++|++|+++.+... +.++||++||++||.|+++.+..
T Consensus 169 ~~~~lpiq~~~i~~l-~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~----------~~~vLvl~PtreLa~Qi~~~l~~ 237 (618)
T 2whx_A 169 ERIGEPDYEVDEDIF-RKKRLTIMDLHPGAGKTKRILPSIVREALKR----------RLRTLILAPTRVVAAEMEEALRG 237 (618)
T ss_dssp CCCCCCCCCCCGGGG-STTCEEEECCCTTSSTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTTT
T ss_pred cccCCCccccCHHHH-hcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC----------CCeEEEEcChHHHHHHHHHHhcC
Confidence 567889988876654 4556799999999999999999999987652 34899999999999999988752
Q ss_pred hcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHH
Q 000114 573 RLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVR 652 (2158)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~ 652 (2158)
..+. +.+.. ..........+.++|.+.+....... ..+.++++|||||||++...+...+..+..++
T Consensus 238 ------~~v~-~~~~~-l~~~~tp~~~i~~~t~~~l~~~l~~~---~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l-- 304 (618)
T 2whx_A 238 ------LPIR-YQTPA-VKSDHTGREIVDLMCHATFTTRLLSS---TRVPNYNLIVMDEAHFTDPCSVAARGYISTRV-- 304 (618)
T ss_dssp ------SCEE-ECCTT-SSCCCCSSSCEEEEEHHHHHHHHHHC---SSCCCCSEEEEESTTCCSHHHHHHHHHHHHHH--
T ss_pred ------Ccee-Eeccc-ceeccCCCceEEEEChHHHHHHHhcc---ccccCCeEEEEECCCCCCccHHHHHHHHHHHh--
Confidence 3344 22221 11111234567778888653222221 34788999999999998324555555554433
Q ss_pred HHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhC
Q 000114 653 QIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAG 732 (2158)
Q Consensus 653 ~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~ 732 (2158)
...+.|+++||||+++. +..+...+ ...+..... +.... ...+. ..+.+ .
T Consensus 305 ----~~~~~q~il~SAT~~~~--~~~~~~~~--~~~~~v~~~------------~~~~~----~~~ll----~~l~~--~ 354 (618)
T 2whx_A 305 ----EMGEAAAIFMTATPPGS--TDPFPQSN--SPIEDIERE------------IPERS----WNTGF----DWITD--Y 354 (618)
T ss_dssp ----HHTSCEEEEECSSCTTC--CCSSCCCS--SCEEEEECC------------CCSSC----CSSSC----HHHHH--C
T ss_pred ----cccCccEEEEECCCchh--hhhhhccC--Cceeeeccc------------CCHHH----HHHHH----HHHHh--C
Confidence 12578999999999753 22222211 111111110 01110 01111 11222 2
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHH
Q 000114 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2158)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v 812 (2158)
.+++||||+|++.|+.++..|...+. .+..+||. +|..+
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g~-------------------------------------~v~~lhg~----~R~~~ 393 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGK-------------------------------------RVIQLSRK----TFDTE 393 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTC-------------------------------------CEEEECTT----THHHH
T ss_pred CCCEEEEECChhHHHHHHHHHHHcCC-------------------------------------cEEEEChH----HHHHH
Confidence 67999999999999999999986532 25667874 78889
Q ss_pred HHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCC-----CC-----ccccCCHHHHHHhhcccCCCCCCCccEE
Q 000114 813 EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPE-----KG-----AWTELSPLDIMQMLGRAGRPQYDSYGEG 882 (2158)
Q Consensus 813 ~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~-----~g-----~~~~~s~~~~~Qr~GRAGR~g~d~~G~~ 882 (2158)
++.|++|+++|||||+++++|||+| +++||+....++|. .+ .-.+.|..+|+||+|||||.|. ..|.+
T Consensus 394 l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~-~~G~a 471 (618)
T 2whx_A 394 YPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA-QEDDQ 471 (618)
T ss_dssp TTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT-CCCEE
T ss_pred HHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCC-CCCeE
Confidence 9999999999999999999999998 88887765544421 00 0124699999999999999863 37899
Q ss_pred EEEcC
Q 000114 883 IIITG 887 (2158)
Q Consensus 883 iil~~ 887 (2158)
+++++
T Consensus 472 i~l~~ 476 (618)
T 2whx_A 472 YVFSG 476 (618)
T ss_dssp EEECS
T ss_pred EEEcc
Confidence 99987
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=311.49 Aligned_cols=356 Identities=17% Similarity=0.145 Sum_probs=239.0
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.|+ .|+++|..+++.++.|+ |+.|+||+|||++|.+|++.....+ ..+++|+||+.||.|.++.+
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~---Iaem~TGeGKTLa~~LP~~l~aL~g-----------~~v~VvTpTreLA~Qdae~m 172 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN---VAEMKTGEGKTLTCVLPAYLNALAG-----------NGVHIVTVNDYLAKRDSEWM 172 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE---EEECCTTSCHHHHTHHHHHHHHTTT-----------SCEEEEESSHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC---EEEecCCCccHHHHHHHHHHHHHhC-----------CCeEEEeCCHHHHHHHHHHH
Confidence 377 89999999999988774 9999999999999999997544322 26999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHhh-hccccEEEcchhHH--HHHHhccC---CCccccccceEEeecccccc-cC-Chh-
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQ-IEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLLH-DN-RGP- 641 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~-~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~lIIiDEaH~l~-d~-rg~- 641 (2158)
..++..+|++|+.++|+.+...+. ...++|+|+||+++ |.+..+.. ....++.+.++||||||.++ |. |.|
T Consensus 173 ~~l~~~lGLsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPL 252 (922)
T 1nkt_A 173 GRVHRFLGLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPL 252 (922)
T ss_dssp HHHHHHTTCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCE
T ss_pred HHHHhhcCCeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccce
Confidence 999999999999999988654332 34789999999996 77765531 23456789999999999887 42 322
Q ss_pred ----------hHHHHHHHHHHHHhh------ccccccEE-----------------EEccccCC-hHHHHHHHhcc----
Q 000114 642 ----------VLESIVARTVRQIET------TKEHIRLV-----------------GLSATLPN-YEDVALFLRVN---- 683 (2158)
Q Consensus 642 ----------~le~iv~r~~~~~~~------~~~~~riv-----------------~lSATlpn-~~dv~~~l~~~---- 683 (2158)
.+...+.++...+.. -....+++ ++|||.+. ...+...+...
T Consensus 253 iiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~ 332 (922)
T 1nkt_A 253 IISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFS 332 (922)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCC
T ss_pred eecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhh
Confidence 122223333322210 01455666 78999764 23333222110
Q ss_pred -cc------CceEEecC---Ccc-----------------cccce---eEEE---------------ee-----------
Q 000114 684 -LE------KGLFYFDN---SYR-----------------PVPLS---QQYI---------------GI----------- 707 (2158)
Q Consensus 684 -~~------~~~~~f~~---~~r-----------------pv~l~---~~~~---------------~~----------- 707 (2158)
.. ..+...+. .+- .+.+. +..- |.
T Consensus 333 ~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef 412 (922)
T 1nkt_A 333 RDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAEL 412 (922)
T ss_dssp BTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHH
T ss_pred cccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHH
Confidence 00 00111110 000 00000 0000 00
Q ss_pred -----------cc--------------CChhHHHHHhhHHHHHHHHHH-hCCCeEEEEecChHHHHHHHHHHHHHhhccc
Q 000114 708 -----------QV--------------KKPLQRFQLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALEND 761 (2158)
Q Consensus 708 -----------~~--------------~~~~~~~~~l~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~ 761 (2158)
+. .....++.. +...+.+. ..+.|+||||+|+..++.++..|...++..
T Consensus 413 ~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~a----l~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~- 487 (922)
T 1nkt_A 413 HEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIA----VVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPH- 487 (922)
T ss_dssp HHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHH----HHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCC-
T ss_pred HHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHH----HHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCE-
Confidence 00 011122222 22233332 346789999999999999999999876543
Q ss_pred ccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCce--
Q 000114 762 TLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAH-- 839 (2158)
Q Consensus 762 ~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v-- 839 (2158)
.++||++...+|..+.+.|+.| .|+|||++++||+|++..
T Consensus 488 ------------------------------------~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~ 529 (922)
T 1nkt_A 488 ------------------------------------NVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGN 529 (922)
T ss_dssp ------------------------------------EEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCC
T ss_pred ------------------------------------EEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCC
Confidence 3459999888888888888888 699999999999999974
Q ss_pred --------------------------------------------------EEEEecccccCCCCCccccCCHHHHHHhhc
Q 000114 840 --------------------------------------------------TVIIKGTQIYNPEKGAWTELSPLDIMQMLG 869 (2158)
Q Consensus 840 --------------------------------------------------~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~G 869 (2158)
.+||+ |+.+. |...|.||+|
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~----te~pe------s~riy~qr~G 599 (922)
T 1nkt_A 530 VDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLG----TERHE------SRRIDNQLRG 599 (922)
T ss_dssp HHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEE----CSCCS------SHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEe----ccCCC------CHHHHHHHhc
Confidence 68999 66554 7789999999
Q ss_pred ccCCCCCCCccEEEEEcCCCcHH-------HHHHh-----hcCCCcccchhhHhhHHHH
Q 000114 870 RAGRPQYDSYGEGIIITGHSELR-------YYLSL-----MNQQLPIESQFVSKLADQL 916 (2158)
Q Consensus 870 RAGR~g~d~~G~~iil~~~~~~~-------~y~~l-----l~~~~pieS~l~~~l~d~l 916 (2158)
|+||.| ..|.++.+++..+.- ....+ +....||++...++..+..
T Consensus 600 RTGRqG--dpG~s~fflSleD~l~r~f~~~~~~~~~~~~~~~~~~~i~~~~~~~~ie~a 656 (922)
T 1nkt_A 600 RSGRQG--DPGESRFYLSLGDELMRRFNGAALETLLTRLNLPDDVPIEAKMVTRAIKSA 656 (922)
T ss_dssp TSSGGG--CCEEEEEEEETTSHHHHHTTHHHHHHHHHHTTCCTTSCCCCHHHHHHHHHH
T ss_pred ccccCC--CCeeEEEEechhHHHHHHhhhHHHHHHHHHhCCCCCcccccHHHHHHHHHH
Confidence 999987 779999888765531 12222 2345689988877655543
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-29 Score=337.07 Aligned_cols=296 Identities=16% Similarity=0.165 Sum_probs=188.0
Q ss_pred CCCHHHH-----HHHHHHH-----cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHH
Q 000114 495 QLNRVQS-----RVYKSAL-----SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (2158)
Q Consensus 495 ~l~~iQ~-----~~i~~~l-----~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~ 564 (2158)
.|+++|+ ++++.++ ..++++|++||||||||++|++++++.+... +.+++|++||++||.
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~----------~~~~lilaPTr~La~ 284 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK----------RLRTAVLAPTRVVAA 284 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC----------CCcEEEEccHHHHHH
Confidence 8999999 9998776 2567899999999999999999999887652 348999999999999
Q ss_pred HHHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHH
Q 000114 565 EVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE 644 (2158)
Q Consensus 565 q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le 644 (2158)
|+++.+..+ ++. ..++... .....+.-+-+.+.+. +++.......++++++|||||+|++.... .
T Consensus 285 Q~~~~l~~~----~i~--~~~~~l~--~v~tp~~ll~~l~~~~---l~~~l~~~~~l~~l~lvViDEaH~~~~~~----~ 349 (673)
T 2wv9_A 285 EMAEALRGL----PVR--YLTPAVQ--REHSGNEIVDVMCHAT---LTHRLMSPLRVPNYNLFVMDEAHFTDPAS----I 349 (673)
T ss_dssp HHHHHTTTS----CCE--ECCC-----CCCCSCCCEEEEEHHH---HHHHHHSSSCCCCCSEEEEESTTCCCHHH----H
T ss_pred HHHHHHhcC----Cee--eeccccc--ccCCHHHHHHHHHhhh---hHHHHhcccccccceEEEEeCCcccCccH----H
Confidence 999888643 322 1111110 0000011122233332 22222222457889999999999982111 1
Q ss_pred HHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHH
Q 000114 645 SIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCY 724 (2158)
Q Consensus 645 ~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~ 724 (2158)
.....+.... ....+++++||||++.. +..+ .....| +......+........ +
T Consensus 350 ~~~~~l~~~~--~~~~~~vl~~SAT~~~~--i~~~------------~~~~~~--i~~v~~~~~~~~~~~~--------l 403 (673)
T 2wv9_A 350 AARGYIATRV--EAGEAAAIFMTATPPGT--SDPF------------PDTNSP--VHDVSSEIPDRAWSSG--------F 403 (673)
T ss_dssp HHHHHHHHHH--HTTSCEEEEECSSCTTC--CCSS------------CCCSSC--EEEEECCCCSSCCSSC--------C
T ss_pred HHHHHHHHhc--cccCCcEEEEcCCCChh--hhhh------------cccCCc--eEEEeeecCHHHHHHH--------H
Confidence 1112221111 12578999999998732 1111 111111 1110000111111111 1
Q ss_pred HHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCC
Q 000114 725 EKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGM 804 (2158)
Q Consensus 725 ~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl 804 (2158)
..+.+ .++++||||++++.++.++..|...+ ..++.+||
T Consensus 404 ~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g-------------------------------------~~v~~lHg-- 442 (673)
T 2wv9_A 404 EWITD--YAGKTVWFVASVKMSNEIAQCLQRAG-------------------------------------KRVIQLNR-- 442 (673)
T ss_dssp HHHHS--CCSCEEEECSSHHHHHHHHHHHHTTT-------------------------------------CCEEEECS--
T ss_pred HHHHh--CCCCEEEEECCHHHHHHHHHHHHhCC-------------------------------------CeEEEeCh--
Confidence 11211 37899999999999999999887532 23677898
Q ss_pred CHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccc------cCCCCC----ccccCCHHHHHHhhcccCCC
Q 000114 805 TRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQI------YNPEKG----AWTELSPLDIMQMLGRAGRP 874 (2158)
Q Consensus 805 ~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~------yd~~~g----~~~~~s~~~~~Qr~GRAGR~ 874 (2158)
.+|..+++.|++|+++|||||+++++|||+| +++||++... ||...+ .-.+.|..+|+||+|||||.
T Consensus 443 --~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~ 519 (673)
T 2wv9_A 443 --KSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRN 519 (673)
T ss_dssp --SSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCC
T ss_pred --HHHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCC
Confidence 3899999999999999999999999999999 9999985422 222100 01345899999999999997
Q ss_pred CCCCccEEEEEc
Q 000114 875 QYDSYGEGIIIT 886 (2158)
Q Consensus 875 g~d~~G~~iil~ 886 (2158)
+ +..|.|++++
T Consensus 520 ~-g~~G~ai~l~ 530 (673)
T 2wv9_A 520 P-SQIGDEYHYG 530 (673)
T ss_dssp S-SCCCEEEEEC
T ss_pred C-CCCCEEEEEE
Confidence 3 3679999995
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-29 Score=324.27 Aligned_cols=284 Identities=19% Similarity=0.161 Sum_probs=191.6
Q ss_pred HHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCc
Q 000114 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDV 579 (2158)
Q Consensus 500 Q~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi 579 (2158)
|++.++.++.++++++++||||||||.+|.+++++. +.+++|++|||+||.|+++.+.+.+ +.
T Consensus 221 ~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~--------------g~~vLVl~PTReLA~Qia~~l~~~~---g~ 283 (666)
T 3o8b_A 221 DNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ--------------GYKVLVLNPSVAATLGFGAYMSKAH---GI 283 (666)
T ss_dssp CCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT--------------TCCEEEEESCHHHHHHHHHHHHHHH---SC
T ss_pred HHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC--------------CCeEEEEcchHHHHHHHHHHHHHHh---CC
Confidence 344455566677889999999999999999988762 2379999999999999999887754 45
Q ss_pred EEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccc
Q 000114 580 KVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKE 659 (2158)
Q Consensus 580 ~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~ 659 (2158)
.++..+|+... ..+++|+|+||+++ +.+. ...++++++|||||||++...+...+..++..+ .. ..
T Consensus 284 ~vg~~vG~~~~----~~~~~IlV~TPGrL--l~~~---~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l----~~-~~ 349 (666)
T 3o8b_A 284 DPNIRTGVRTI----TTGAPVTYSTYGKF--LADG---GCSGGAYDIIICDECHSTDSTTILGIGTVLDQA----ET-AG 349 (666)
T ss_dssp CCEEECSSCEE----CCCCSEEEEEHHHH--HHTT---SCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHT----TT-TT
T ss_pred CeeEEECcEec----cCCCCEEEECcHHH--HhCC---CcccCcccEEEEccchhcCccHHHHHHHHHHhh----hh-cC
Confidence 67778887653 34689999999985 3222 245678999999999987444433344333322 21 22
Q ss_pred cccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEE
Q 000114 660 HIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIF 739 (2158)
Q Consensus 660 ~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVF 739 (2158)
...++++|||+++. +... ..........+.+. ..+. ... .. .+...++++|||
T Consensus 350 ~~llil~SAT~~~~------i~~~-~p~i~~v~~~~~~~---i~~~---~~~-~~-------------l~~~~~~~vLVF 402 (666)
T 3o8b_A 350 ARLVVLATATPPGS------VTVP-HPNIEEVALSNTGE---IPFY---GKA-IP-------------IEAIRGGRHLIF 402 (666)
T ss_dssp CSEEEEEESSCTTC------CCCC-CTTEEEEECBSCSS---EEET---TEE-EC-------------GGGSSSSEEEEE
T ss_pred CceEEEECCCCCcc------cccC-CcceEEEeecccch---hHHH---Hhh-hh-------------hhhccCCcEEEE
Confidence 33478889999862 1110 00011111000000 0000 000 00 012247899999
Q ss_pred ecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCC
Q 000114 740 VHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDG 819 (2158)
Q Consensus 740 v~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g 819 (2158)
|+|++.++.+++.|...+ ..+..+||+|++.+ |.++
T Consensus 403 v~Tr~~ae~la~~L~~~g-------------------------------------~~v~~lHG~l~q~e-------r~~~ 438 (666)
T 3o8b_A 403 CHSKKKCDELAAKLSGLG-------------------------------------INAVAYYRGLDVSV-------IPTI 438 (666)
T ss_dssp CSCHHHHHHHHHHHHTTT-------------------------------------CCEEEECTTSCGGG-------SCSS
T ss_pred eCCHHHHHHHHHHHHhCC-------------------------------------CcEEEecCCCCHHH-------HHhC
Confidence 999999999999987643 23678899999875 4566
Q ss_pred CceEEEechhhhhccCCCceEEEEeccc------c--cCCCCC---ccccCCHHHHHHhhcccCCCCCCCccEEEEEcCC
Q 000114 820 HVQVLVSTATLAWGVNLPAHTVIIKGTQ------I--YNPEKG---AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2158)
Q Consensus 820 ~i~VLVaT~tla~GVdlP~v~vVI~~~~------~--yd~~~g---~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2158)
..+|||||+++++|||+| +++||+... - |||..+ ...+.|..+|+||+||||| | ..|. +.+++.
T Consensus 439 ~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g--~~G~-i~lvt~ 513 (666)
T 3o8b_A 439 GDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-G--RRGI-YRFVTP 513 (666)
T ss_dssp SCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-S--SCEE-EEESCC
T ss_pred CCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-C--CCCE-EEEEec
Confidence 779999999999999998 888885320 0 444322 1145689999999999999 6 6788 888877
Q ss_pred Cc
Q 000114 889 SE 890 (2158)
Q Consensus 889 ~~ 890 (2158)
.+
T Consensus 514 ~e 515 (666)
T 3o8b_A 514 GE 515 (666)
T ss_dssp CC
T ss_pred ch
Confidence 65
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=320.80 Aligned_cols=331 Identities=16% Similarity=0.131 Sum_probs=191.5
Q ss_pred CCCCHHHHHHHHHHHc----CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH-H
Q 000114 494 TQLNRVQSRVYKSALS----SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV-G 568 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~----~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~-~ 568 (2158)
..|+++|.++++.++. +.+++++++|||||||++++..+.+.+..+.... ......++|||+|+++|+.|+. +
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~--~~~~~~~vlil~P~~~L~~Q~~~~ 254 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRT--GDYRKPRILFLADRNVLVDDPKDK 254 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSS--CSSSCCCEEEEEC-----------
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccc--cccCCCeEEEEeCCHHHHHHHHHH
Confidence 4799999999999876 6677999999999999998766655544321000 0113468999999999999998 6
Q ss_pred HHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhcc--CCCccccccceEEeecccccccCChhhHHHH
Q 000114 569 NLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKS--GDRTYTQLVKLLIIDEIHLLHDNRGPVLESI 646 (2158)
Q Consensus 569 ~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~--~~~~~l~~v~lIIiDEaH~l~d~rg~~le~i 646 (2158)
.|.. ++..+..+.++. .....+|+|+||+++....+.. ........+++|||||||++....+..+..+
T Consensus 255 ~~~~----~~~~~~~~~~~~-----~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~i 325 (590)
T 3h1t_A 255 TFTP----FGDARHKIEGGK-----VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREI 325 (590)
T ss_dssp CCTT----TCSSEEECCC-------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CHHH
T ss_pred HHHh----cchhhhhhhccC-----CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHHHH
Confidence 5554 344455554432 2246799999999873332211 1112345689999999999865433444444
Q ss_pred HHHHHHHHhhccccccEEEEccccCChH--HHHHHHhccccCceEEecCC-----cccccceeEEEeec-----------
Q 000114 647 VARTVRQIETTKEHIRLVGLSATLPNYE--DVALFLRVNLEKGLFYFDNS-----YRPVPLSQQYIGIQ----------- 708 (2158)
Q Consensus 647 v~r~~~~~~~~~~~~riv~lSATlpn~~--dv~~~l~~~~~~~~~~f~~~-----~rpv~l~~~~~~~~----------- 708 (2158)
+..+ +..++++||||+.+.. +...+++. ..+.+.-. ...+|.....+...
T Consensus 326 l~~~--------~~~~~l~lTATP~~~~~~~~~~~f~~----~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 393 (590)
T 3h1t_A 326 LEYF--------EPAFQIGMTATPLREDNRDTYRYFGN----PIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKG 393 (590)
T ss_dssp HHHS--------TTSEEEEEESSCSCTTTHHHHHHSCS----CSEEECHHHHHHHTSSCCEEEEEEEETTCC--------
T ss_pred HHhC--------CcceEEEeccccccccchhHHHHcCC----ceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccc
Confidence 4332 3467999999976432 23334332 11111000 00011111111110
Q ss_pred ---------------cCChh------HHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhccccccccc
Q 000114 709 ---------------VKKPL------QRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFL 767 (2158)
Q Consensus 709 ---------------~~~~~------~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~ 767 (2158)
..... .+...+.+.+.+.+......+++||||++++.|..++..|...+.....
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~----- 468 (590)
T 3h1t_A 394 DVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSR----- 468 (590)
T ss_dssp ---------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHT-----
T ss_pred cccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhc-----
Confidence 00000 0111112222222223333579999999999999999999876532110
Q ss_pred ccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCce---EEEechhhhhccCCCceEEEEe
Q 000114 768 KEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQ---VLVSTATLAWGVNLPAHTVIIK 844 (2158)
Q Consensus 768 ~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~---VLVaT~tla~GVdlP~v~vVI~ 844 (2158)
..+..+..+||.++. +|..+++.|++|..+ |||||+++++|||+|++++||+
T Consensus 469 ------------------------~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~ 523 (590)
T 3h1t_A 469 ------------------------KHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVL 523 (590)
T ss_dssp ------------------------TCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEE
T ss_pred ------------------------cCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEE
Confidence 011236677888763 799999999998876 8999999999999999999998
Q ss_pred cccccCCCCCccccCCHHHHHHhhcccCCCCCC-CccEEEEEcC
Q 000114 845 GTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD-SYGEGIIITG 887 (2158)
Q Consensus 845 ~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d-~~G~~iil~~ 887 (2158)
++++. |...|+||+|||||.+.+ ....++++-.
T Consensus 524 ----~~~~~------s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~ 557 (590)
T 3h1t_A 524 ----ARVVN------SMSEFKQIVGRGTRLREDYGKLWFNIIDY 557 (590)
T ss_dssp ----ESCCC------CHHHHHHHHTTSCCCBGGGTBSCEEEEEC
T ss_pred ----EecCC------ChHHHHHHHhhhcccCccCCCCEEEEEec
Confidence 66665 788999999999998753 2344444433
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=312.73 Aligned_cols=356 Identities=13% Similarity=0.091 Sum_probs=215.8
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.|+|+|..+++.++.|+ ++.++||||||++|.+|++..... +. ++++++||++||.|.++.+. .+...+|+
T Consensus 74 ~p~~VQ~~~i~~ll~G~---Iaem~TGsGKTlaf~LP~l~~~l~---g~--~vlVltPTreLA~Q~~e~~~-~l~~~lgl 144 (853)
T 2fsf_A 74 RHFDVQLLGGMVLNERC---IAEMRTGEGKTLTATLPAYLNALT---GK--GVHVVTVNDYLAQRDAENNR-PLFEFLGL 144 (853)
T ss_dssp CCCHHHHHHHHHHHSSE---EEECCTTSCHHHHHHHHHHHHHTT---SS--CCEEEESSHHHHHHHHHHHH-HHHHHTTC
T ss_pred CCChHHHhhcccccCCe---eeeecCCchHHHHHHHHHHHHHHc---CC--cEEEEcCCHHHHHHHHHHHH-HHHHhcCC
Confidence 89999999999998764 999999999999999999855433 23 79999999999999999888 56566799
Q ss_pred EEEEEcCCcchhhhc-ccCCcEEEeCHHHH-HHHHhhhh----ccccccceeEEEecccccccCCCC--------Ch--H
Q 000114 1421 RVVELTGETAMDLKL-LEKGQIIISTPEKW-DALSRRWK----QRKYVQQVSLFIIDELHLIGGQGG--------PV--L 1484 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~~~-l~~~~IIV~TPe~l-~~l~r~~~----~~~~l~~v~llIiDEaH~l~~~~g--------~~--~ 1484 (2158)
+|+.++|+.+...+. ...++|+|+||+++ .++++... ....++++.++|+||||.++.+.| +. -
T Consensus 145 ~v~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~ 224 (853)
T 2fsf_A 145 TVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDS 224 (853)
T ss_dssp CEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC----
T ss_pred eEEEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccc
Confidence 999999998765433 33579999999998 56665421 234578899999999998873222 10 0
Q ss_pred HHHHHHHHHHHhhcCC--------------------CceEE------------------------EeccCCCC-hHHHHH
Q 000114 1485 EVIVSRMRYIASQVEN--------------------KIRIV------------------------ALSTSLAN-AKDLGE 1519 (2158)
Q Consensus 1485 e~~isrl~~i~~~~~~--------------------~~riV------------------------~lSATl~n-~~dl~~ 1519 (2158)
..+...+..+...++. ..++. ++|||.+. ...+..
T Consensus 225 ~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~ 304 (853)
T 2fsf_A 225 SEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTA 304 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHH
Confidence 1112222222222221 23332 67888643 111111
Q ss_pred Hh------ccCCCceE---------ecCCCC-----------cc------ccc---EEEEecccccchH-----------
Q 000114 1520 WI------GATSHGLF---------NFPPGV-----------RP------VPL---EIHIQGVDITNFE----------- 1553 (2158)
Q Consensus 1520 wl------~~~~~~i~---------~f~~~~-----------rp------v~l---~~~i~~~~~~~~~----------- 1553 (2158)
.+ ......++ .|.... .+ +.+ ..........++.
T Consensus 305 al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTG 384 (853)
T 2fsf_A 305 ALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTG 384 (853)
T ss_dssp ----------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEEC
T ss_pred HHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCC
Confidence 00 00000000 000000 00 000 0000000000000
Q ss_pred ------HH--------------------------HHhcChHHHHHHH----HhHhcCCCEEEEecChHHHHHHHHHHHhh
Q 000114 1554 ------AR--------------------------MQAMTKPTFTAIV----QHAKNEKPALVFVPSRKYVRLTAVDLMTY 1597 (2158)
Q Consensus 1554 ------~~--------------------------~~~~~k~~~~~i~----~~~~~~~~~IVFv~sr~~~~~~a~~L~~~ 1597 (2158)
.. ...-....+.++. .....+.|+||||+|++.++.++..|..
T Consensus 385 Ta~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~- 463 (853)
T 2fsf_A 385 TADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTK- 463 (853)
T ss_dssp TTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHH-
T ss_pred CchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHH-
Confidence 00 0000112233333 2224678999999999999999876632
Q ss_pred cccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCc
Q 000114 1598 SSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTA 1677 (2158)
Q Consensus 1598 ~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~ 1677 (2158)
.+..+..+||++...+|..+.+.|+.| .|+|||++++||+|++.
T Consensus 464 ----------------------------------~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l 507 (853)
T 2fsf_A 464 ----------------------------------AGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVL 507 (853)
T ss_dssp ----------------------------------TTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCT
T ss_pred ----------------------------------CCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccC
Confidence 244577899999999999999999988 69999999999999996
Q ss_pred --------------------------------c-----EEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceE
Q 000114 1678 --------------------------------H-----LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2158)
Q Consensus 1678 --------------------------------~-----~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~ 1720 (2158)
+ .+|| ++..|.+...|.||+||+||.| ..|.
T Consensus 508 ~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI----------~te~pes~riy~qr~GRTGRqG--d~G~ 575 (853)
T 2fsf_A 508 GGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHII----------GTERHESRRIDNQLRGRSGRQG--DAGS 575 (853)
T ss_dssp TCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEE----------ESSCCSSHHHHHHHHTTSSGGG--CCEE
T ss_pred CCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEE----------EccCCCCHHHHHhhccccccCC--CCee
Confidence 3 6888 6778889999999999999987 7888
Q ss_pred EEEEecCChH-------HHHHHHh-----hCCCccccchhhHHHHH
Q 000114 1721 CVILCHAPRK-------EYYKKFL-----YDAFPVESHLHHFLHDN 1754 (2158)
Q Consensus 1721 ~iil~~~~~~-------~~~~k~l-----~~~~piES~L~~~l~d~ 1754 (2158)
++.+++..+. +.+++++ .+..|+++.+.....+.
T Consensus 576 s~~fls~eD~l~r~f~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~ 621 (853)
T 2fsf_A 576 SRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVTKAIAN 621 (853)
T ss_dssp EEEEEETTSGGGGTTCCHHHHTTGGGGCCCTTCCCCCHHHHHHHHH
T ss_pred EEEEecccHHHHHHhhHHHHHHHHHhhCCCCccccchHHHHHHHHH
Confidence 8888765541 2223333 24678888875554443
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.9e-27 Score=305.70 Aligned_cols=357 Identities=15% Similarity=0.115 Sum_probs=238.9
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
|+ .|+|+|..+++.++.|+ |+.++||+|||++|.+|++..... +. .+++|+||++||.|.++.+. .+...
T Consensus 109 G~-rP~~VQ~~~ip~Ll~G~---Iaem~TGeGKTLa~~LP~~l~aL~---g~--~v~VvTpTreLA~Qdae~m~-~l~~~ 178 (922)
T 1nkt_A 109 DQ-RPFDVQVMGAAALHLGN---VAEMKTGEGKTLTCVLPAYLNALA---GN--GVHIVTVNDYLAKRDSEWMG-RVHRF 178 (922)
T ss_dssp SC-CCCHHHHHHHHHHHTTE---EEECCTTSCHHHHTHHHHHHHHTT---TS--CEEEEESSHHHHHHHHHHHH-HHHHH
T ss_pred CC-CCCHHHHHHHHhHhcCC---EEEecCCCccHHHHHHHHHHHHHh---CC--CeEEEeCCHHHHHHHHHHHH-HHHhh
Confidence 57 99999999999998754 999999999999999999744333 23 69999999999999999888 56666
Q ss_pred CCcEEEEEcCCcchhhh-cccCCcEEEeCHHHH-HHHHhhh----hccccccceeEEEecccccccC-C-CCC-------
Q 000114 1418 LGMRVVELTGETAMDLK-LLEKGQIIISTPEKW-DALSRRW----KQRKYVQQVSLFIIDELHLIGG-Q-GGP------- 1482 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~~~-~l~~~~IIV~TPe~l-~~l~r~~----~~~~~l~~v~llIiDEaH~l~~-~-~g~------- 1482 (2158)
+|++|+.+.|+.+...+ ....++|+|+||+++ .++++.. .....++.+.++||||||.++. + +.|
T Consensus 179 lGLsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~ 258 (922)
T 1nkt_A 179 LGLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPA 258 (922)
T ss_dssp TTCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEEC
T ss_pred cCCeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCC
Confidence 79999999998876533 334579999999998 5555543 1234577899999999998773 2 111
Q ss_pred -hHHHHHHHHHHHHhhcC---------CCceEE-----------------EeccCCCC-hHHHHHH-----h-ccCCCce
Q 000114 1483 -VLEVIVSRMRYIASQVE---------NKIRIV-----------------ALSTSLAN-AKDLGEW-----I-GATSHGL 1528 (2158)
Q Consensus 1483 -~~e~~isrl~~i~~~~~---------~~~riV-----------------~lSATl~n-~~dl~~w-----l-~~~~~~i 1528 (2158)
.-..+...+..+...++ +..++. ++|||.+. ...+... + ......+
T Consensus 259 ~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYi 338 (922)
T 1nkt_A 259 DGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYI 338 (922)
T ss_dssp CCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEE
T ss_pred CcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhccccee
Confidence 11234555666666665 567777 78999765 2233221 1 1111111
Q ss_pred Ee------cCC-CCcc-------------------c---ccEEEEecccccchH-----------------HH-------
Q 000114 1529 FN------FPP-GVRP-------------------V---PLEIHIQGVDITNFE-----------------AR------- 1555 (2158)
Q Consensus 1529 ~~------f~~-~~rp-------------------v---~l~~~i~~~~~~~~~-----------------~~------- 1555 (2158)
+. ... ..|. + +-..........++. ..
T Consensus 339 V~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l 418 (922)
T 1nkt_A 339 VRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKL 418 (922)
T ss_dssp ECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred eecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCC
Confidence 00 000 0000 0 001111111100000 00
Q ss_pred -------------------HHhcChHHHHHHH----HhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCC
Q 000114 1556 -------------------MQAMTKPTFTAIV----QHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWP 1612 (2158)
Q Consensus 1556 -------------------~~~~~k~~~~~i~----~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~ 1612 (2158)
...-....+.++. .....+.|+||||+|++.++.++..|..
T Consensus 419 ~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~---------------- 482 (922)
T 1nkt_A 419 GVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTK---------------- 482 (922)
T ss_dssp EEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHH----------------
T ss_pred CeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHH----------------
Confidence 0000011232332 2224678999999999999999876632
Q ss_pred cccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCcc--------------
Q 000114 1613 AEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAH-------------- 1678 (2158)
Q Consensus 1613 ~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~-------------- 1678 (2158)
.+..+..+||++...++..+.+.|+.| .|+|||++++||+|++..
T Consensus 483 -------------------~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~ 541 (922)
T 1nkt_A 483 -------------------RRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRER 541 (922)
T ss_dssp -------------------TTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHT
T ss_pred -------------------CCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhc
Confidence 244578899999988888888888888 699999999999999953
Q ss_pred --------------------------------------EEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceE
Q 000114 1679 --------------------------------------LVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGK 1720 (2158)
Q Consensus 1679 --------------------------------------~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~ 1720 (2158)
.+|| ++..|.+...|.|++||+||.| ..|.
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI----------~te~pes~riy~qr~GRTGRqG--dpG~ 609 (922)
T 1nkt_A 542 GLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVL----------GTERHESRRIDNQLRGRSGRQG--DPGE 609 (922)
T ss_dssp TCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEE----------ECSCCSSHHHHHHHHHTSSGGG--CCEE
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEE----------eccCCCCHHHHHHHhcccccCC--CCee
Confidence 6788 6778889999999999999987 7888
Q ss_pred EEEEecCChHH-------HHHHHh-----hCCCccccchhhHHHH
Q 000114 1721 CVILCHAPRKE-------YYKKFL-----YDAFPVESHLHHFLHD 1753 (2158)
Q Consensus 1721 ~iil~~~~~~~-------~~~k~l-----~~~~piES~L~~~l~d 1753 (2158)
++.+++..+.- .+.+++ .+..|+++.+.....+
T Consensus 610 s~fflSleD~l~r~f~~~~~~~~~~~~~~~~~~~i~~~~~~~~ie 654 (922)
T 1nkt_A 610 SRFYLSLGDELMRRFNGAALETLLTRLNLPDDVPIEAKMVTRAIK 654 (922)
T ss_dssp EEEEEETTSHHHHHTTHHHHHHHHHHTTCCTTSCCCCHHHHHHHH
T ss_pred EEEEechhHHHHHHhhhHHHHHHHHHhCCCCCcccccHHHHHHHH
Confidence 88887765421 122222 3467888888555443
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-28 Score=319.39 Aligned_cols=301 Identities=17% Similarity=0.188 Sum_probs=208.3
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.|+|+|.++++.++.++ ++++++|||+|||++|+.++... ++ +++|++|+++|+.|+++++.+ | |.
T Consensus 93 ~l~~~Q~~ai~~i~~~~-~~ll~~~TGsGKT~~~l~~i~~~------~~--~~Lvl~P~~~L~~Q~~~~~~~-~----~~ 158 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDK-RGCIVLPTGSGKTHVAMAAINEL------ST--PTLIVVPTLALAEQWKERLGI-F----GE 158 (472)
T ss_dssp CBCHHHHHHHHHHTTTT-EEEEECCTTSCHHHHHHHHHHHH------CS--CEEEEESSHHHHHHHHHHGGG-G----CG
T ss_pred CcCHHHHHHHHHHHhcC-CEEEEeCCCCCHHHHHHHHHHHc------CC--CEEEEECCHHHHHHHHHHHHh-C----CC
Confidence 79999999999998754 59999999999999998888753 33 899999999999999998885 5 56
Q ss_pred E-EEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcC
Q 000114 1421 R-VVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVE 1499 (2158)
Q Consensus 1421 ~-v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~ 1499 (2158)
+ ++.++|+... .++|+|+||+.+......+ .+++++|||||+|.+.+.. +..+ ...+
T Consensus 159 ~~v~~~~g~~~~------~~~Ivv~T~~~l~~~~~~~-----~~~~~liIvDEaH~~~~~~---~~~~-------~~~~- 216 (472)
T 2fwr_A 159 EYVGEFSGRIKE------LKPLTVSTYDSAYVNAEKL-----GNRFMLLIFDEVHHLPAES---YVQI-------AQMS- 216 (472)
T ss_dssp GGEEEBSSSCBC------CCSEEEEEHHHHHHTHHHH-----TTTCSEEEEETGGGTTSTT---THHH-------HHTC-
T ss_pred cceEEECCCcCC------cCCEEEEEcHHHHHHHHHh-----cCCCCEEEEECCcCCCChH---HHHH-------HHhc-
Confidence 7 8899987653 4689999999876554332 2468999999999987543 2222 2222
Q ss_pred CCceEEEeccCCCChH----HHHHHhccCCCc--eEe----cCCCCcccccEEEEeccc---------------------
Q 000114 1500 NKIRIVALSTSLANAK----DLGEWIGATSHG--LFN----FPPGVRPVPLEIHIQGVD--------------------- 1548 (2158)
Q Consensus 1500 ~~~riV~lSATl~n~~----dl~~wl~~~~~~--i~~----f~~~~rpv~l~~~i~~~~--------------------- 1548 (2158)
...++++||||+.+.. .+..+++..... ... +.+......+.+......
T Consensus 217 ~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (472)
T 2fwr_A 217 IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGIT 296 (472)
T ss_dssp CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCT
T ss_pred CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3678999999997532 344444421100 000 001111111111100000
Q ss_pred ---ccchH----------------------HHHHhcChHHHHH---HHHhHhcCCCEEEEecChHHHHHHHHHHHhhccc
Q 000114 1549 ---ITNFE----------------------ARMQAMTKPTFTA---IVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSM 1600 (2158)
Q Consensus 1549 ---~~~~~----------------------~~~~~~~k~~~~~---i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~ 1600 (2158)
...+. ............. +... ..++++||||++++.++.++..|
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l------ 369 (472)
T 2fwr_A 297 LRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVF------ 369 (472)
T ss_dssp TTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHT------
T ss_pred ccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHh------
Confidence 00000 0000011111122 2222 45789999999999988777433
Q ss_pred CCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEE
Q 000114 1601 DGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLV 1680 (2158)
Q Consensus 1601 ~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~v 1680 (2158)
++..+||+++..+|..+++.|++|.++|||||+++++|+|+|++.+
T Consensus 370 ----------------------------------~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~ 415 (472)
T 2fwr_A 370 ----------------------------------LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANV 415 (472)
T ss_dssp ----------------------------------TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSE
T ss_pred ----------------------------------CcceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcE
Confidence 2567999999999999999999999999999999999999999998
Q ss_pred EEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCC-CceEEEEEecCC
Q 000114 1681 VVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD-NSGKCVILCHAP 1728 (2158)
Q Consensus 1681 VI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d-~~G~~iil~~~~ 1728 (2158)
|| +...+.++..|+||+|||||.|.+ +.+.++.++...
T Consensus 416 Vi----------~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 416 GV----------IMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp EE----------EECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred EE----------EECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 88 344566899999999999999855 466666677654
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-28 Score=320.81 Aligned_cols=299 Identities=14% Similarity=0.084 Sum_probs=201.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
...++|+|.++++.+.+ +++++++||||||||++|++|++..+.. .+. ++||++||++||.|+++.++
T Consensus 169 ~~~~lpiq~~~i~~l~~-g~dvlv~a~TGSGKT~~~~lpil~~l~~--~~~--~vLvl~PtreLa~Qi~~~l~------- 236 (618)
T 2whx_A 169 ERIGEPDYEVDEDIFRK-KRLTIMDLHPGAGKTKRILPSIVREALK--RRL--RTLILAPTRVVAAEMEEALR------- 236 (618)
T ss_dssp CCCCCCCCCCCGGGGST-TCEEEECCCTTSSTTTTHHHHHHHHHHH--TTC--CEEEEESSHHHHHHHHHHTT-------
T ss_pred cccCCCccccCHHHHhc-CCeEEEEcCCCCCHHHHHHHHHHHHHHh--CCC--eEEEEcChHHHHHHHHHHhc-------
Confidence 46788998887666654 6679999999999999999999988866 233 89999999999999998765
Q ss_pred CcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhc
Q 000114 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~ 1498 (2158)
+..+. +.+... ....-....+.++|.+.+...+.. ...++++++||+||||++. ..+...+..+.....
T Consensus 237 ~~~v~-~~~~~l-~~~~tp~~~i~~~t~~~l~~~l~~---~~~l~~~~~iViDEah~~~----~~~~~~~~~i~~~l~-- 305 (618)
T 2whx_A 237 GLPIR-YQTPAV-KSDHTGREIVDLMCHATFTTRLLS---STRVPNYNLIVMDEAHFTD----PCSVAARGYISTRVE-- 305 (618)
T ss_dssp TSCEE-ECCTTS-SCCCCSSSCEEEEEHHHHHHHHHH---CSSCCCCSEEEEESTTCCS----HHHHHHHHHHHHHHH--
T ss_pred CCcee-Eecccc-eeccCCCceEEEEChHHHHHHHhc---cccccCCeEEEEECCCCCC----ccHHHHHHHHHHHhc--
Confidence 23343 222211 101112235778888876654332 3458899999999999982 122223333322221
Q ss_pred CCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEE
Q 000114 1499 ENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPAL 1578 (2158)
Q Consensus 1499 ~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~I 1578 (2158)
..+.|+++||||+++.. ..+.... .+.+++... ++.... +..+..+. ...+++|
T Consensus 306 ~~~~q~il~SAT~~~~~--~~~~~~~----------~~~~~v~~~---~~~~~~--------~~ll~~l~---~~~~~~L 359 (618)
T 2whx_A 306 MGEAAAIFMTATPPGST--DPFPQSN----------SPIEDIERE---IPERSW--------NTGFDWIT---DYQGKTV 359 (618)
T ss_dssp HTSCEEEEECSSCTTCC--CSSCCCS----------SCEEEEECC---CCSSCC--------SSSCHHHH---HCCSCEE
T ss_pred ccCccEEEEECCCchhh--hhhhccC----------Cceeeeccc---CCHHHH--------HHHHHHHH---hCCCCEE
Confidence 25789999999997541 1111110 011111100 111110 11112222 3467999
Q ss_pred EEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcC
Q 000114 1579 VFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAG 1658 (2158)
Q Consensus 1579 VFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g 1658 (2158)
|||+|++.|+.++..|.. .+..+..+||. +|..+++.|++|
T Consensus 360 VF~~s~~~a~~l~~~L~~-----------------------------------~g~~v~~lhg~----~R~~~l~~F~~g 400 (618)
T 2whx_A 360 WFVPSIKAGNDIANCLRK-----------------------------------SGKRVIQLSRK----TFDTEYPKTKLT 400 (618)
T ss_dssp EECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTT----THHHHTTHHHHS
T ss_pred EEECChhHHHHHHHHHHH-----------------------------------cCCcEEEEChH----HHHHHHHhhcCC
Confidence 999999999999977632 23458889984 788899999999
Q ss_pred CceEEEecCccccccCCCccEEEEecceee-----cCC----CCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEec
Q 000114 1659 KIKVCVMSSSMCWGVPLTAHLVVVMGTQYY-----DGQ----ENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCH 1726 (2158)
Q Consensus 1659 ~i~VLVaT~~la~Gvdlp~~~vVI~gt~~y-----d~~----~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~ 1726 (2158)
+++|||||+++++|+|+|...||..|..+. +.. .++..|.+..+|+||+|||||.| ...|.|++++.
T Consensus 401 ~~~VLVaTdv~~rGiDi~v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g-~~~G~ai~l~~ 476 (618)
T 2whx_A 401 DWDFVVTTDISEMGANFRAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNP-AQEDDQYVFSG 476 (618)
T ss_dssp CCSEEEECGGGGTTCCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCT-TCCCEEEEECS
T ss_pred CcEEEEECcHHHcCcccCceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCC-CCCCeEEEEcc
Confidence 999999999999999999555555554322 111 35567889999999999999986 45889999986
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.7e-28 Score=308.48 Aligned_cols=276 Identities=16% Similarity=0.153 Sum_probs=174.9
Q ss_pred cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh
Q 000114 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK 1434 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~ 1434 (2158)
..++|++++||||||||++|++|+++.+... +. +++|++||++||.|+++.++ ++.+...++...
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~--~~lil~Ptr~La~Q~~~~l~-------~~~v~~~~~~~~---- 70 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRFLPQILAECARR--RL--RTLVLAPTRVVLSEMKEAFH-------GLDVKFHTQAFS---- 70 (440)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TC--CEEEEESSHHHHHHHHHHTT-------TSCEEEESSCCC----
T ss_pred hCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CC--eEEEEcchHHHHHHHHHHHh-------cCCeEEecccce----
Confidence 4567899999999999999999999887652 33 89999999999999998776 223333322211
Q ss_pred cccCCcEEEeCHHHHHH------HHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEec
Q 000114 1435 LLEKGQIIISTPEKWDA------LSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALS 1508 (2158)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~------l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lS 1508 (2158)
.++||+++.. +.+++.....+++++++|+||+|++. ..+...+..+..+.. ..+.++++||
T Consensus 71 -------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~----~~~~~~~~~~~~~~~--~~~~~~l~~S 137 (440)
T 1yks_A 71 -------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLD----PASIAARGWAAHRAR--ANESATILMT 137 (440)
T ss_dssp -------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCS----HHHHHHHHHHHHHHH--TTSCEEEEEC
T ss_pred -------eccCCccceeeecccchhHhhhCcccccCccEEEEECccccC----cchHHHHHHHHHHhc--cCCceEEEEe
Confidence 2555544321 22233334457899999999999982 122222222222221 3579999999
Q ss_pred cCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHH
Q 000114 1509 TSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVR 1588 (2158)
Q Consensus 1509 ATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~ 1588 (2158)
||+++.. ..+.. . +.++............ ...+..+. ..++++||||++++.|+
T Consensus 138 AT~~~~~--~~~~~-----------~--~~~~~~~~~~~~~~~~--------~~~~~~l~---~~~~~~lVF~~s~~~a~ 191 (440)
T 1yks_A 138 ATPPGTS--DEFPH-----------S--NGEIEDVQTDIPSEPW--------NTGHDWIL---ADKRPTAWFLPSIRAAN 191 (440)
T ss_dssp SSCTTCC--CSSCC-----------C--SSCEEEEECCCCSSCC--------SSSCHHHH---HCCSCEEEECSCHHHHH
T ss_pred CCCCchh--hhhhh-----------c--CCCeeEeeeccChHHH--------HHHHHHHH---hcCCCEEEEeCCHHHHH
Confidence 9996431 01110 0 1111111111111110 11112222 34789999999999999
Q ss_pred HHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCc
Q 000114 1589 LTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSS 1668 (2158)
Q Consensus 1589 ~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~ 1668 (2158)
.++..|.. .+..+..+|| ++|..+++.|++|+++|||||++
T Consensus 192 ~l~~~L~~-----------------------------------~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v 232 (440)
T 1yks_A 192 VMAASLRK-----------------------------------AGKSVVVLNR----KTFEREYPTIKQKKPDFILATDI 232 (440)
T ss_dssp HHHHHHHH-----------------------------------TTCCEEECCS----SSCC--------CCCSEEEESSS
T ss_pred HHHHHHHH-----------------------------------cCCCEEEecc----hhHHHHHhhhcCCCceEEEECCh
Confidence 99876632 2456899999 57889999999999999999999
Q ss_pred cccccCCCccEEEE-eccee---e-cCC----CCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEe
Q 000114 1669 MCWGVPLTAHLVVV-MGTQY---Y-DGQ----ENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2158)
Q Consensus 1669 la~Gvdlp~~~vVI-~gt~~---y-d~~----~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~ 1725 (2158)
+++|||+| +.+|| .|+.+ | +.. .++..|.+..+|+||+|||||.| ...|.|++++
T Consensus 233 ~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g-~~~g~~~~l~ 296 (440)
T 1yks_A 233 AEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNP-NRDGDSYYYS 296 (440)
T ss_dssp TTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCT-TCCCEEEEEC
T ss_pred hheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCC-CCCceEEEEe
Confidence 99999999 66655 34422 1 111 12456789999999999999974 3689999996
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-28 Score=307.74 Aligned_cols=280 Identities=17% Similarity=0.207 Sum_probs=177.3
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCcc
Q 000114 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~ 590 (2158)
++++|++||||||||++|++++++.+... +.+++|++||++||.|+++.+. |+.+..++|....
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~----------g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~ 65 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKK----------RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS 65 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTT------TSCEEEC------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhC----------CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc
Confidence 46799999999999999999999766542 3489999999999999988775 4566666665321
Q ss_pred CHhhhccccEEEcchhHHH-HHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEccc
Q 000114 591 TRQQIEETQIIVTTPEKWD-IITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 591 ~~~~~~~~~IiV~TPekld-~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (2158)
....+..+.+.|.+.+. .+.. ...+.++++|||||+|++. +........+.... ....+++++||||
T Consensus 66 --~~~~~~~~~~~~~~~l~~~l~~----~~~~~~l~~vViDEaH~~~----~~~~~~~~~l~~~~--~~~~~~~l~~SAT 133 (431)
T 2v6i_A 66 --ERTGNEIVDFMCHSTFTMKLLQ----GVRVPNYNLYIMDEAHFLD----PASVAARGYIETRV--SMGDAGAIFMTAT 133 (431)
T ss_dssp -----CCCSEEEEEHHHHHHHHHH----TCCCCCCSEEEEESTTCCS----HHHHHHHHHHHHHH--HTTSCEEEEEESS
T ss_pred --cCCCCceEEEEchHHHHHHHhc----CccccCCCEEEEeCCccCC----ccHHHHHHHHHHHh--hCCCCcEEEEeCC
Confidence 11224556777888652 2222 2347789999999999862 22222222222221 2457999999999
Q ss_pred cCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHH
Q 000114 670 LPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKT 749 (2158)
Q Consensus 670 lpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~ 749 (2158)
+++. +.. +.....| +......+..... ..+ +..+.+ .++++||||++++.++.+
T Consensus 134 ~~~~--~~~------------~~~~~~~--i~~~~~~~~~~~~----~~~----~~~l~~--~~~~~lVF~~~~~~~~~l 187 (431)
T 2v6i_A 134 PPGT--TEA------------FPPSNSP--IIDEETRIPDKAW----NSG----YEWITE--FDGRTVWFVHSIKQGAEI 187 (431)
T ss_dssp CTTC--CCS------------SCCCSSC--CEEEECCCCSSCC----SSC----CHHHHS--CSSCEEEECSSHHHHHHH
T ss_pred CCcc--hhh------------hcCCCCc--eeeccccCCHHHH----HHH----HHHHHc--CCCCEEEEeCCHHHHHHH
Confidence 8741 111 1111111 1100000111110 111 111211 267899999999999999
Q ss_pred HHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechh
Q 000114 750 ARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTAT 829 (2158)
Q Consensus 750 a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~t 829 (2158)
+..|...+ ..++.+||+ +|..+++.|++|+++|||||++
T Consensus 188 ~~~L~~~~-------------------------------------~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v 226 (431)
T 2v6i_A 188 GTCLQKAG-------------------------------------KKVLYLNRK----TFESEYPKCKSEKWDFVITTDI 226 (431)
T ss_dssp HHHHHHTT-------------------------------------CCEEEESTT----THHHHTTHHHHSCCSEEEECGG
T ss_pred HHHHHHcC-------------------------------------CeEEEeCCc----cHHHHHHhhcCCCCeEEEECch
Confidence 99887642 237788987 5888999999999999999999
Q ss_pred hhhccCCCceEEEEecccccCC---CC----CccccCCHHHHHHhhcccCCCCCCCccEEEEEcC
Q 000114 830 LAWGVNLPAHTVIIKGTQIYNP---EK----GAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887 (2158)
Q Consensus 830 la~GVdlP~v~vVI~~~~~yd~---~~----g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~ 887 (2158)
+++|||+| +..||++...+.| .. ....+.+..+|+||+|||||.|.. .|.++++..
T Consensus 227 ~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~-~~~~~~~~~ 289 (431)
T 2v6i_A 227 SEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEK-LGDIYAYSG 289 (431)
T ss_dssp GGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTC-CCCEEEECS
T ss_pred HHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCC-CCeEEEEcC
Confidence 99999999 5444432111100 00 001234889999999999997632 456666653
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-28 Score=324.07 Aligned_cols=294 Identities=15% Similarity=0.121 Sum_probs=192.4
Q ss_pred CCCHHHH-----HHHHHHh-----cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHH
Q 000114 1341 HFNPIQT-----QVFTVLY-----NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDW 1410 (2158)
Q Consensus 1341 ~~~~iQ~-----q~~~~l~-----~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~ 1410 (2158)
+|+|+|. ++++.++ ..+++++++||||||||++|++|+++.+.. .+. +++|++||++||.|+++.+
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--~~~--~~lilaPTr~La~Q~~~~l 290 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--KRL--RTAVLAPTRVVAAEMAEAL 290 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--TTC--CEEEEESSHHHHHHHHHHT
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--CCC--cEEEEccHHHHHHHHHHHH
Confidence 8999999 9998876 257789999999999999999999988765 233 8999999999999999877
Q ss_pred HHHhcCCCCcEEEEEcCCcchhhhcccC--CcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHH
Q 000114 1411 EIKFGQGLGMRVVELTGETAMDLKLLEK--GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2158)
Q Consensus 1411 ~~~f~~~~g~~v~~ltG~~~~~~~~l~~--~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~i 1488 (2158)
+ .+ ++ ...++... .... .-+-+.+.+.+ .+++.....++++++|||||+|++. .......
T Consensus 291 ~-~~----~i--~~~~~~l~----~v~tp~~ll~~l~~~~l---~~~l~~~~~l~~l~lvViDEaH~~~----~~~~~~~ 352 (673)
T 2wv9_A 291 R-GL----PV--RYLTPAVQ----REHSGNEIVDVMCHATL---THRLMSPLRVPNYNLFVMDEAHFTD----PASIAAR 352 (673)
T ss_dssp T-TS----CC--EECCC-------CCCCSCCCEEEEEHHHH---HHHHHSSSCCCCCSEEEEESTTCCC----HHHHHHH
T ss_pred h-cC----Ce--eeeccccc----ccCCHHHHHHHHHhhhh---HHHHhcccccccceEEEEeCCcccC----ccHHHHH
Confidence 6 22 22 22222111 0011 12333444432 3333334568899999999999982 1122222
Q ss_pred HHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHH
Q 000114 1489 SRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIV 1568 (2158)
Q Consensus 1489 srl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~ 1568 (2158)
..+..+.. ....++++||||++.. +..+..... ++......+..... ...+..+.
T Consensus 353 ~~l~~~~~--~~~~~vl~~SAT~~~~-------------i~~~~~~~~--~i~~v~~~~~~~~~--------~~~l~~l~ 407 (673)
T 2wv9_A 353 GYIATRVE--AGEAAAIFMTATPPGT-------------SDPFPDTNS--PVHDVSSEIPDRAW--------SSGFEWIT 407 (673)
T ss_dssp HHHHHHHH--TTSCEEEEECSSCTTC-------------CCSSCCCSS--CEEEEECCCCSSCC--------SSCCHHHH
T ss_pred HHHHHhcc--ccCCcEEEEcCCCChh-------------hhhhcccCC--ceEEEeeecCHHHH--------HHHHHHHH
Confidence 33333221 2579999999999643 111211111 22211111111111 11112221
Q ss_pred HhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHH
Q 000114 1569 QHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQ 1648 (2158)
Q Consensus 1569 ~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR 1648 (2158)
..++++||||++++.|+.++..|.. .+..+..+|| ++|
T Consensus 408 ---~~~~~~lVF~~s~~~~e~la~~L~~-----------------------------------~g~~v~~lHg----~eR 445 (673)
T 2wv9_A 408 ---DYAGKTVWFVASVKMSNEIAQCLQR-----------------------------------AGKRVIQLNR----KSY 445 (673)
T ss_dssp ---SCCSCEEEECSSHHHHHHHHHHHHT-----------------------------------TTCCEEEECS----SSH
T ss_pred ---hCCCCEEEEECCHHHHHHHHHHHHh-----------------------------------CCCeEEEeCh----HHH
Confidence 3578999999999999999876632 2445899999 489
Q ss_pred HHHHHHHHcCCceEEEecCccccccCCCccEEEE-eccee-----ecCC----CCcCcCCCHHHHHHhhccCCCCCCCCc
Q 000114 1649 EVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV-MGTQY-----YDGQ----ENAHTDYPVTDLLQMMGHASRPLLDNS 1718 (2158)
Q Consensus 1649 ~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI-~gt~~-----yd~~----~~~~~~~s~~~~lQr~GRaGR~g~d~~ 1718 (2158)
..+++.|++|+++|||||+++++|||+| +.+|| .|+.+ |++. ..+..|.+..+|+||+|||||.+ ...
T Consensus 446 ~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~-g~~ 523 (673)
T 2wv9_A 446 DTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNP-SQI 523 (673)
T ss_dssp HHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCS-SCC
T ss_pred HHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCC-CCC
Confidence 9999999999999999999999999999 55555 34321 3332 12457889999999999999984 478
Q ss_pred eEEEEEe
Q 000114 1719 GKCVILC 1725 (2158)
Q Consensus 1719 G~~iil~ 1725 (2158)
|.|++++
T Consensus 524 G~ai~l~ 530 (673)
T 2wv9_A 524 GDEYHYG 530 (673)
T ss_dssp CEEEEEC
T ss_pred CEEEEEE
Confidence 9999995
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-28 Score=311.63 Aligned_cols=289 Identities=15% Similarity=0.119 Sum_probs=187.2
Q ss_pred HHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcc
Q 000114 1351 TVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETA 1430 (2158)
Q Consensus 1351 ~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~ 1430 (2158)
+.++.++++++++||||||||++|++|++..+.. .+. ++||++||++|+.|+++.+. |..+....+...
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--~~~--~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~ 83 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--QRL--RTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAVQ 83 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--TTC--CEEEEECSHHHHHHHHHHTT-------TSCEEECC----
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--CCC--cEEEECchHHHHHHHHHHhc-------CceEeEEecccc
Confidence 4566778889999999999999999999988765 233 89999999999999998776 334433333221
Q ss_pred hhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccC
Q 000114 1431 MDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTS 1510 (2158)
Q Consensus 1431 ~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSAT 1510 (2158)
.. .-....+.++|.+.+... +.....++++++|||||||.+.... ......+..+. ...+.|+|+||||
T Consensus 84 ~~--~t~~~~i~~~~~~~l~~~---l~~~~~l~~~~~iViDEaH~~~~~~----~~~~~~~~~~~--~~~~~~~il~SAT 152 (459)
T 2z83_A 84 RE--HQGNEIVDVMCHATLTHR---LMSPNRVPNYNLFVMDEAHFTDPAS----IAARGYIATKV--ELGEAAAIFMTAT 152 (459)
T ss_dssp ------CCCSEEEEEHHHHHHH---HHSCC-CCCCSEEEESSTTCCSHHH----HHHHHHHHHHH--HTTSCEEEEECSS
T ss_pred cC--CCCCcEEEEEchHHHHHH---hhccccccCCcEEEEECCccCCchh----hHHHHHHHHHh--ccCCccEEEEEcC
Confidence 11 111235777888875433 2334568899999999999752111 11111112111 1358999999999
Q ss_pred CCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHH
Q 000114 1511 LANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLT 1590 (2158)
Q Consensus 1511 l~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~ 1590 (2158)
++.. +..+..... |+.......+...+. ..+..+. ...+++||||+|++.|+.+
T Consensus 153 ~~~~-------------~~~~~~~~~--pi~~~~~~~~~~~~~--------~~~~~l~---~~~~~~LVF~~s~~~~~~l 206 (459)
T 2z83_A 153 PPGT-------------TDPFPDSNA--PIHDLQDEIPDRAWS--------SGYEWIT---EYAGKTVWFVASVKMGNEI 206 (459)
T ss_dssp CTTC-------------CCSSCCCSS--CEEEEECCCCSSCCS--------SCCHHHH---HCCSCEEEECSCHHHHHHH
T ss_pred CCcc-------------hhhhccCCC--CeEEecccCCcchhH--------HHHHHHH---hcCCCEEEEeCChHHHHHH
Confidence 9742 111111111 222111111111110 0111121 2368999999999999999
Q ss_pred HHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccc
Q 000114 1591 AVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMC 1670 (2158)
Q Consensus 1591 a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la 1670 (2158)
+..|.. .+..+..+|+. +|..+++.|++|+++|||||++++
T Consensus 207 ~~~L~~-----------------------------------~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~ 247 (459)
T 2z83_A 207 AMCLQR-----------------------------------AGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISE 247 (459)
T ss_dssp HHHHHH-----------------------------------TTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC-
T ss_pred HHHHHh-----------------------------------cCCcEEecCHH----HHHHHHhhccCCCceEEEECChHH
Confidence 876632 24457888984 788899999999999999999999
Q ss_pred cccCCCccEEEE-eccee-----ecCCCC----cCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC
Q 000114 1671 WGVPLTAHLVVV-MGTQY-----YDGQEN----AHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1671 ~Gvdlp~~~vVI-~gt~~-----yd~~~~----~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~ 1728 (2158)
+|+|+|+ .+|| .|+.+ |++..+ +..|.+..+|+||+|||||.| ...|.|++++...
T Consensus 248 ~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g-~~~G~~~~~~~~~ 313 (459)
T 2z83_A 248 MGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNP-NQVGDEYHYGGAT 313 (459)
T ss_dssp --CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCT-TCCCEEEEECSCC
T ss_pred hCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCC-CCCCeEEEEEccc
Confidence 9999999 5555 34221 333322 457889999999999999987 3488999988775
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.7e-27 Score=299.68 Aligned_cols=282 Identities=16% Similarity=0.135 Sum_probs=187.0
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcc
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLL 1436 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l 1436 (2158)
+++++++||||||||++|++|+++.+.. .+. +++|++||++|+.|+++.+. |..+..++|..... .-
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~--~g~--~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~~--~~ 68 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK--KRL--RTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQSE--RT 68 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH--TTC--CEEEEESSHHHHHHHHHHTT-------TSCEEEC-----------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh--CCC--CEEEECcHHHHHHHHHHHhC-------CCeEEEEecCcccc--CC
Confidence 5679999999999999999999976655 233 89999999999999887654 45666666643211 11
Q ss_pred cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHH
Q 000114 1437 EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKD 1516 (2158)
Q Consensus 1437 ~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~d 1516 (2158)
....+.+.|.+.+...+. ....+++++++||||+|+++ +.+......+..+. .+.+.++++||||+++.
T Consensus 69 ~~~~~~~~~~~~l~~~l~---~~~~~~~l~~vViDEaH~~~----~~~~~~~~~l~~~~--~~~~~~~l~~SAT~~~~-- 137 (431)
T 2v6i_A 69 GNEIVDFMCHSTFTMKLL---QGVRVPNYNLYIMDEAHFLD----PASVAARGYIETRV--SMGDAGAIFMTATPPGT-- 137 (431)
T ss_dssp CCCSEEEEEHHHHHHHHH---HTCCCCCCSEEEEESTTCCS----HHHHHHHHHHHHHH--HTTSCEEEEEESSCTTC--
T ss_pred CCceEEEEchHHHHHHHh---cCccccCCCEEEEeCCccCC----ccHHHHHHHHHHHh--hCCCCcEEEEeCCCCcc--
Confidence 123567778887643322 24457899999999999872 22333444444443 24579999999999752
Q ss_pred HHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHh
Q 000114 1517 LGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMT 1596 (2158)
Q Consensus 1517 l~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~ 1596 (2158)
+..+.+...| +......++.... ...+..+. ..++++||||++++.|+.++..|..
T Consensus 138 -----------~~~~~~~~~~--i~~~~~~~~~~~~--------~~~~~~l~---~~~~~~lVF~~~~~~~~~l~~~L~~ 193 (431)
T 2v6i_A 138 -----------TEAFPPSNSP--IIDEETRIPDKAW--------NSGYEWIT---EFDGRTVWFVHSIKQGAEIGTCLQK 193 (431)
T ss_dssp -----------CCSSCCCSSC--CEEEECCCCSSCC--------SSCCHHHH---SCSSCEEEECSSHHHHHHHHHHHHH
T ss_pred -----------hhhhcCCCCc--eeeccccCCHHHH--------HHHHHHHH---cCCCCEEEEeCCHHHHHHHHHHHHH
Confidence 1112222112 1111111111111 11112222 2367899999999999999866632
Q ss_pred hcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCC
Q 000114 1597 YSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLT 1676 (2158)
Q Consensus 1597 ~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp 1676 (2158)
.+..++.+||+ +|..+++.|++|+++|||||+++++|+|+|
T Consensus 194 -----------------------------------~~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip 234 (431)
T 2v6i_A 194 -----------------------------------AGKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK 234 (431)
T ss_dssp -----------------------------------TTCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC
T ss_pred -----------------------------------cCCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC
Confidence 14568999997 688899999999999999999999999999
Q ss_pred ccEEEEecceee---c---CCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEec
Q 000114 1677 AHLVVVMGTQYY---D---GQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCH 1726 (2158)
Q Consensus 1677 ~~~vVI~gt~~y---d---~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~ 1726 (2158)
...||..|+.+. + -..++..|.+..+|+||+|||||.| ...|.++++..
T Consensus 235 ~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g-~~~~~~~~~~~ 289 (431)
T 2v6i_A 235 ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNP-EKLGDIYAYSG 289 (431)
T ss_dssp CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCT-TCCCCEEEECS
T ss_pred CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCC-CCCCeEEEEcC
Confidence 766665544331 1 0124567789999999999999987 34555666653
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-27 Score=315.40 Aligned_cols=329 Identities=16% Similarity=0.134 Sum_probs=190.2
Q ss_pred CCCCHHHHHHHHHHhc----CCCcEEEEccCCchhHHHHHHHHHHHHHhhc----CCCceEEEEEcccHHHHHHHH-HHH
Q 000114 1340 KHFNPIQTQVFTVLYN----TDDNVLVAAPTGSGKTICSEFAILRNHQKAS----ETGVMRAVYIAPLEALAKERY-RDW 1410 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~----~~~nvli~ApTGSGKTl~a~l~il~~l~~~~----~~~~~~~v~IaP~raLa~q~~-~~~ 1410 (2158)
..++|+|.++++.+++ +++++++++|||||||++++..+.+.+.... .....++|||+|+++|+.|++ +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3799999999999876 6678999999999999998666555544310 002338999999999999998 655
Q ss_pred HHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhh--hhccccccceeEEEecccccccCCCCChHHHHH
Q 000114 1411 EIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRR--WKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIV 1488 (2158)
Q Consensus 1411 ~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~--~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~i 1488 (2158)
+ .|+ ..+..+.++. ....++|+|+||+++....+. +........+++||+||||++....+..+..++
T Consensus 257 ~-~~~----~~~~~~~~~~-----~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~il 326 (590)
T 3h1t_A 257 T-PFG----DARHKIEGGK-----VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREIL 326 (590)
T ss_dssp T-TTC----SSEEECCC-------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CHHHH
T ss_pred H-hcc----hhhhhhhccC-----CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHHHHH
Confidence 5 443 3344444432 224569999999998765432 112234567999999999998754333444443
Q ss_pred HHHHHHHhhcCCCceEEEeccCCCCh--HHHHHHhccCCCceEecC-----CCCcccccEEEEecc--------------
Q 000114 1489 SRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATSHGLFNFP-----PGVRPVPLEIHIQGV-------------- 1547 (2158)
Q Consensus 1489 srl~~i~~~~~~~~riV~lSATl~n~--~dl~~wl~~~~~~i~~f~-----~~~rpv~l~~~i~~~-------------- 1547 (2158)
.. ++ ..++++||||+.+. .+...+++.... .+.+. ....| ........
T Consensus 327 ~~-------~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~-~~~~~~~i~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~ 395 (590)
T 3h1t_A 327 EY-------FE-PAFQIGMTATPLREDNRDTYRYFGNPIY-TYSLRQGIDDGFLAP--YRVHRVISEVDAAGWRPSKGDV 395 (590)
T ss_dssp HH-------ST-TSEEEEEESSCSCTTTHHHHHHSCSCSE-EECHHHHHHHTSSCC--EEEEEEEETTCC----------
T ss_pred Hh-------CC-cceEEEeccccccccchhHHHHcCCceE-ecCHHHHhhCCccCC--cEEEEeeeeeeccccccccccc
Confidence 32 22 47899999998753 345566654211 11000 00011 11110000
Q ss_pred ------------cccchHHHH--HhcChHHHHHHH---HhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccC
Q 000114 1548 ------------DITNFEARM--QAMTKPTFTAIV---QHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLL 1610 (2158)
Q Consensus 1548 ------------~~~~~~~~~--~~~~k~~~~~i~---~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~ 1610 (2158)
....+.... ....+.....+. ....+.+++||||++++.|+.++..|.....
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~----------- 464 (590)
T 3h1t_A 396 DRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNS----------- 464 (590)
T ss_dssp -------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTH-----------
T ss_pred cccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhh-----------
Confidence 000111000 000111112222 2224567899999999999999987754211
Q ss_pred CCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCce---EEEecCccccccCCCccEEEEeccee
Q 000114 1611 WPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIK---VCVMSSSMCWGVPLTAHLVVVMGTQY 1687 (2158)
Q Consensus 1611 ~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~---VLVaT~~la~Gvdlp~~~vVI~gt~~ 1687 (2158)
.........+..+||.++. +|..+++.|++|..+ |||||+++++|+|+|++.+||
T Consensus 465 ----------------~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi----- 522 (590)
T 3h1t_A 465 ----------------DLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVV----- 522 (590)
T ss_dssp ----------------HHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEE-----
T ss_pred ----------------hhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEE-----
Confidence 0001112237788998764 799999999998876 899999999999999999998
Q ss_pred ecCCCCcCcCCCHHHHHHhhccCCCCCCC-CceEEEEEecC
Q 000114 1688 YDGQENAHTDYPVTDLLQMMGHASRPLLD-NSGKCVILCHA 1727 (2158)
Q Consensus 1688 yd~~~~~~~~~s~~~~lQr~GRaGR~g~d-~~G~~iil~~~ 1727 (2158)
+...+.+...|+||+|||||.+.+ +...++++-.-
T Consensus 523 -----~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 523 -----LARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp -----EESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred -----EEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 344566899999999999998742 34445555444
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-27 Score=310.30 Aligned_cols=284 Identities=15% Similarity=0.075 Sum_probs=186.6
Q ss_pred HHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEE
Q 000114 1346 QTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVEL 1425 (2158)
Q Consensus 1346 Q~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~l 1425 (2158)
|++.+..++.++++++++||||||||.+|.+++++ .+. +++|++|||+||.|+++++.+.++ ..+...
T Consensus 221 ~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~------~g~--~vLVl~PTReLA~Qia~~l~~~~g----~~vg~~ 288 (666)
T 3o8b_A 221 DNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA------QGY--KVLVLNPSVAATLGFGAYMSKAHG----IDPNIR 288 (666)
T ss_dssp CCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH------TTC--CEEEEESCHHHHHHHHHHHHHHHS----CCCEEE
T ss_pred HHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH------CCC--eEEEEcchHHHHHHHHHHHHHHhC----CCeeEE
Confidence 33444445556778999999999999999998874 233 899999999999999998886664 356667
Q ss_pred cCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEE
Q 000114 1426 TGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIV 1505 (2158)
Q Consensus 1426 tG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV 1505 (2158)
+|+.. .....+|+|+||+++. +. ....++++++|||||||++.. .+...+.++...... .....++
T Consensus 289 vG~~~----~~~~~~IlV~TPGrLl---~~--~~l~l~~l~~lVlDEAH~l~~----~~~~~l~~Il~~l~~-~~~~lli 354 (666)
T 3o8b_A 289 TGVRT----ITTGAPVTYSTYGKFL---AD--GGCSGGAYDIIICDECHSTDS----TTILGIGTVLDQAET-AGARLVV 354 (666)
T ss_dssp CSSCE----ECCCCSEEEEEHHHHH---HT--TSCCTTSCSEEEETTTTCCSH----HHHHHHHHHHHHTTT-TTCSEEE
T ss_pred ECcEe----ccCCCCEEEECcHHHH---hC--CCcccCcccEEEEccchhcCc----cHHHHHHHHHHhhhh-cCCceEE
Confidence 77654 2346799999999972 22 234577899999999998742 222233333332211 1223478
Q ss_pred EeccCCCChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChH
Q 000114 1506 ALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRK 1585 (2158)
Q Consensus 1506 ~lSATl~n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~ 1585 (2158)
++|||+++. +......+. .+.........+.. .... ... ...+++||||+|++
T Consensus 355 l~SAT~~~~------i~~~~p~i~-----------~v~~~~~~~i~~~~--~~~~-------l~~-~~~~~vLVFv~Tr~ 407 (666)
T 3o8b_A 355 LATATPPGS------VTVPHPNIE-----------EVALSNTGEIPFYG--KAIP-------IEA-IRGGRHLIFCHSKK 407 (666)
T ss_dssp EEESSCTTC------CCCCCTTEE-----------EEECBSCSSEEETT--EEEC-------GGG-SSSSEEEEECSCHH
T ss_pred EECCCCCcc------cccCCcceE-----------EEeecccchhHHHH--hhhh-------hhh-ccCCcEEEEeCCHH
Confidence 889999863 111110010 11100000000000 0000 011 35788999999999
Q ss_pred HHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEe
Q 000114 1586 YVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVM 1665 (2158)
Q Consensus 1586 ~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVa 1665 (2158)
.|+.++..|.. .+..+..+||+|++++ |.++..+||||
T Consensus 408 ~ae~la~~L~~-----------------------------------~g~~v~~lHG~l~q~e-------r~~~~~~VLVA 445 (666)
T 3o8b_A 408 KCDELAAKLSG-----------------------------------LGINAVAYYRGLDVSV-------IPTIGDVVVVA 445 (666)
T ss_dssp HHHHHHHHHHT-----------------------------------TTCCEEEECTTSCGGG-------SCSSSCEEEEE
T ss_pred HHHHHHHHHHh-----------------------------------CCCcEEEecCCCCHHH-------HHhCCCcEEEE
Confidence 99999977632 2456899999999886 45677799999
Q ss_pred cCccccccCCCccEEEE-eccee-------ecCCCC---cCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCCh
Q 000114 1666 SSSMCWGVPLTAHLVVV-MGTQY-------YDGQEN---AHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1666 T~~la~Gvdlp~~~vVI-~gt~~-------yd~~~~---~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~ 1729 (2158)
|+++++|||+| +.+|| .|... ||+... ...|.+..+|+||+||||| | ..|. +.|+...+
T Consensus 446 TdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g--~~G~-i~lvt~~e 515 (666)
T 3o8b_A 446 TDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-G--RRGI-YRFVTPGE 515 (666)
T ss_dssp CTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-S--SCEE-EEESCCCC
T ss_pred CChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-C--CCCE-EEEEecch
Confidence 99999999998 55555 33221 222211 1168899999999999999 5 6788 77776654
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-24 Score=299.71 Aligned_cols=324 Identities=18% Similarity=0.177 Sum_probs=209.3
Q ss_pred CCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 494 TQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
.+|+|+|.+++..++.. ..++|+++|||+|||.+++..+...+..+. ..+++||+|+ +|+.|+..++.+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~---------~~rvLIVvP~-sLl~Qw~~E~~~ 221 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGA---------AERVLIIVPE-TLQHQWLVEMLR 221 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS---------CCCEEEECCT-TTHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC---------CCeEEEEeCH-HHHHHHHHHHHH
Confidence 47999999999988864 457999999999999999888877765542 2379999999 999999999987
Q ss_pred hcccCCcEEEEEeCCCccCH-----hhhccccEEEcchhHHHHHHhccC--CCccccccceEEeecccccccCC--hhhH
Q 000114 573 RLQMYDVKVRELSGDQTLTR-----QQIEETQIIVTTPEKWDIITRKSG--DRTYTQLVKLLIIDEIHLLHDNR--GPVL 643 (2158)
Q Consensus 573 ~~~~~gi~v~~l~Gd~~~~~-----~~~~~~~IiV~TPekld~l~r~~~--~~~~l~~v~lIIiDEaH~l~d~r--g~~l 643 (2158)
.+ ++++..++|+..... ......+|+|+|++.+ .+... .......+++|||||||++.... ....
T Consensus 222 ~f---~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L---~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~ 295 (968)
T 3dmq_A 222 RF---NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFA---RRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE 295 (968)
T ss_dssp HS---CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHH---HTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHH
T ss_pred Hh---CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHH---hhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHH
Confidence 66 566777766442211 1134679999999964 22211 11223468999999999996522 1111
Q ss_pred HHHHHHHHHHHhhccccccEEEEccccCC--hHHHHHHHh---cccc-------------------------C-------
Q 000114 644 ESIVARTVRQIETTKEHIRLVGLSATLPN--YEDVALFLR---VNLE-------------------------K------- 686 (2158)
Q Consensus 644 e~iv~r~~~~~~~~~~~~riv~lSATlpn--~~dv~~~l~---~~~~-------------------------~------- 686 (2158)
..++..+ .....++++||||+.. ..++...++ ...- .
T Consensus 296 ~~~l~~L------~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~ 369 (968)
T 3dmq_A 296 YQAIEQL------AEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDE 369 (968)
T ss_dssp HHHHHHH------HTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGG
T ss_pred HHHHHHH------hhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHH
Confidence 2222222 1234579999999632 222211111 0000 0
Q ss_pred --------------------------------------------ceEEecCCcccc---ccee-EEEeeccCC-------
Q 000114 687 --------------------------------------------GLFYFDNSYRPV---PLSQ-QYIGIQVKK------- 711 (2158)
Q Consensus 687 --------------------------------------------~~~~f~~~~rpv---~l~~-~~~~~~~~~------- 711 (2158)
+...+......+ |... ..+.+....
T Consensus 370 ~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~ 449 (968)
T 3dmq_A 370 LNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIK 449 (968)
T ss_dssp TTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHH
T ss_pred HHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHH
Confidence 000000000000 0000 000000000
Q ss_pred -------------------------------------hhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHH
Q 000114 712 -------------------------------------PLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIR 754 (2158)
Q Consensus 712 -------------------------------------~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~ 754 (2158)
...+.. .+. .+.....++++||||+++..+..++..|.
T Consensus 450 ~~~~~~~~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~----~L~-~ll~~~~~~k~iVF~~~~~~~~~l~~~L~ 524 (968)
T 3dmq_A 450 VSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVE----WLM-GYLTSHRSQKVLVICAKAATALQLEQVLR 524 (968)
T ss_dssp HHHHTTCCSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHH----HHH-HHHHHTSSSCCCEECSSTHHHHHHHHHHH
T ss_pred HHhhhhhhhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHH----HHH-HHHHhCCCCCEEEEeCcHHHHHHHHHHHH
Confidence 000111 112 22233457899999999999999998886
Q ss_pred HHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCC--ceEEEechhhhh
Q 000114 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGH--VQVLVSTATLAW 832 (2158)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~--i~VLVaT~tla~ 832 (2158)
.. ....+..+||+|+..+|..+++.|++|. ++|||||+++++
T Consensus 525 ~~------------------------------------~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~ 568 (968)
T 3dmq_A 525 ER------------------------------------EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSE 568 (968)
T ss_dssp TT------------------------------------TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTC
T ss_pred HH------------------------------------cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhc
Confidence 42 1234778899999999999999999998 999999999999
Q ss_pred ccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCc
Q 000114 833 GVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2158)
Q Consensus 833 GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (2158)
|+|+|++++||+ ||++. ++..|.||+||+||.|.......+.+.....
T Consensus 569 GlDl~~~~~VI~----~d~p~------~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t 616 (968)
T 3dmq_A 569 GRNFQFASHMVM----FDLPF------NPDLLEQRIGRLDRIGQAHDIQIHVPYLEKT 616 (968)
T ss_dssp SSCCTTCCEEEC----SSCCS------SHHHHHHHHHTTSCSSSCSCCEEEEEEETTS
T ss_pred CCCcccCcEEEE----ecCCC------CHHHHHHHhhccccCCCCceEEEEEecCCCh
Confidence 999999999999 66653 7789999999999998554434444444443
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-23 Score=287.95 Aligned_cols=340 Identities=14% Similarity=0.140 Sum_probs=216.2
Q ss_pred CCCCHHHHHHHHHHhcC-CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1340 KHFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~-~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
..|+|+|.+++..++.. ..++|++++||+|||+++..++...+.. ...+ +++||+|+ +|+.|+..++.+.|
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~-g~~~--rvLIVvP~-sLl~Qw~~E~~~~f---- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS-GAAE--RVLIIVPE-TLQHQWLVEMLRRF---- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT-SSCC--CEEEECCT-TTHHHHHHHHHHHS----
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh-CCCC--eEEEEeCH-HHHHHHHHHHHHHh----
Confidence 37999999999988763 4579999999999999997777766655 3334 89999999 99999999998777
Q ss_pred CcEEEEEcCCcchh-----hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHH
Q 000114 1419 GMRVVELTGETAMD-----LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~-----~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~ 1493 (2158)
+.++..++|+.... ...+...+|+|+|++.+....... ......++++|||||||++....... ......+..
T Consensus 224 ~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~-~~l~~~~~dlVIvDEAH~~kn~~~~~-s~~~~~l~~ 301 (968)
T 3dmq_A 224 NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRL-EHLCEAEWDLLVVDEAHHLVWSEDAP-SREYQAIEQ 301 (968)
T ss_dssp CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTT-HHHHTSCCCEEEECCSSCCCCBTTBC-CHHHHHHHH
T ss_pred CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHH-HHhhhcCCCEEEehhhHhhcCCCCcc-hHHHHHHHH
Confidence 45666776654322 123445699999998764211110 11224578999999999997543221 001122222
Q ss_pred HHhhcCCCceEEEeccCCCC--hHHH---HHHhccCCC--------------------------------------c---
Q 000114 1494 IASQVENKIRIVALSTSLAN--AKDL---GEWIGATSH--------------------------------------G--- 1527 (2158)
Q Consensus 1494 i~~~~~~~~riV~lSATl~n--~~dl---~~wl~~~~~--------------------------------------~--- 1527 (2158)
+. ....++++||||+.+ ..++ ..++..... .
T Consensus 302 L~---~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~ 378 (968)
T 3dmq_A 302 LA---EHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIG 378 (968)
T ss_dssp HH---TTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTC
T ss_pred Hh---hcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhc
Confidence 32 235579999999843 2211 111110000 0
Q ss_pred --------------------------------------eEec-CCCCccc---ccEEEEecccccchHHHH---------
Q 000114 1528 --------------------------------------LFNF-PPGVRPV---PLEIHIQGVDITNFEARM--------- 1556 (2158)
Q Consensus 1528 --------------------------------------i~~f-~~~~rpv---~l~~~i~~~~~~~~~~~~--------- 1556 (2158)
++.. ....... .........+. .+....
T Consensus 379 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~-~~~~~~~~~~~~~~~ 457 (968)
T 3dmq_A 379 EQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPT-QYQTAIKVSGIMGAR 457 (968)
T ss_dssp TTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCH-HHHHHHHHHHHTTCC
T ss_pred chhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCH-HHHHHHHHHhhhhhh
Confidence 0000 0000000 00000000000 000000
Q ss_pred --------------------------HhcChHHHHHHHHhH--hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccc
Q 000114 1557 --------------------------QAMTKPTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAF 1608 (2158)
Q Consensus 1557 --------------------------~~~~k~~~~~i~~~~--~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~ 1608 (2158)
..........+...+ .+++++||||+++..+..++..|.
T Consensus 458 ~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~------------- 524 (968)
T 3dmq_A 458 KSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLR------------- 524 (968)
T ss_dssp SSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHH-------------
T ss_pred hhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHH-------------
Confidence 000011222222222 467899999999999988886552
Q ss_pred cCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCC--ceEEEecCccccccCCCccEEEEecce
Q 000114 1609 LLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGK--IKVCVMSSSMCWGVPLTAHLVVVMGTQ 1686 (2158)
Q Consensus 1609 l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~--i~VLVaT~~la~Gvdlp~~~vVI~gt~ 1686 (2158)
...+..+..+||+|+..+|..+++.|++|+ ++|||||+++++|+|+|++.+||
T Consensus 525 ---------------------~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI---- 579 (968)
T 3dmq_A 525 ---------------------EREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMV---- 579 (968)
T ss_dssp ---------------------TTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEE----
T ss_pred ---------------------HHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEE----
Confidence 123566899999999999999999999998 99999999999999999999998
Q ss_pred eecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC-hHHHHHHHh
Q 000114 1687 YYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP-RKEYYKKFL 1737 (2158)
Q Consensus 1687 ~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~-~~~~~~k~l 1737 (2158)
+++.|.++..|.||+||+||.|..+...++.+.... ..+.+.+.+
T Consensus 580 ------~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~ 625 (968)
T 3dmq_A 580 ------MFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWY 625 (968)
T ss_dssp ------CSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHH
T ss_pred ------EecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHH
Confidence 667788999999999999999855555555555444 334344444
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-23 Score=269.85 Aligned_cols=324 Identities=16% Similarity=0.145 Sum_probs=204.8
Q ss_pred CCCCHHHHHHHHHHH---cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 494 TQLNRVQSRVYKSAL---SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l---~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
..|+|+|.+++..+. ..+.++|+++|||+|||++++..+....... ...++|||+| .+|+.|+.+++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~---------~~~~~LIv~P-~~l~~qw~~e~ 105 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKEN---------ELTPSLVICP-LSVLKNWEEEL 105 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTT---------CCSSEEEEEC-STTHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcC---------CCCCEEEEcc-HHHHHHHHHHH
Confidence 379999999997654 4456799999999999999866555544322 1237999999 67999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVART 650 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~ 650 (2158)
.+.+. ++++..++|+... ......+|+|+||+.+..... .....+++||+||||.+.+....... .+
T Consensus 106 ~~~~~--~~~v~~~~g~~~~--~~~~~~~ivi~t~~~l~~~~~-----l~~~~~~~vIvDEaH~~kn~~~~~~~-~l--- 172 (500)
T 1z63_A 106 SKFAP--HLRFAVFHEDRSK--IKLEDYDIILTTYAVLLRDTR-----LKEVEWKYIVIDEAQNIKNPQTKIFK-AV--- 172 (500)
T ss_dssp HHHCT--TSCEEECSSSTTS--CCGGGSSEEEEEHHHHTTCHH-----HHTCCEEEEEEETGGGGSCTTSHHHH-HH---
T ss_pred HHHCC--CceEEEEecCchh--ccccCCcEEEeeHHHHhccch-----hcCCCcCEEEEeCccccCCHhHHHHH-HH---
Confidence 98764 4577777776532 234578999999997621111 11234789999999999653322222 11
Q ss_pred HHHHhhccccccEEEEccccC--ChHHHHH---HHhccc-----------------------------cCceEEecCCc-
Q 000114 651 VRQIETTKEHIRLVGLSATLP--NYEDVAL---FLRVNL-----------------------------EKGLFYFDNSY- 695 (2158)
Q Consensus 651 ~~~~~~~~~~~riv~lSATlp--n~~dv~~---~l~~~~-----------------------------~~~~~~f~~~~- 695 (2158)
... ...+.++||||+. +..++.. |+.... -.+........
T Consensus 173 ----~~l-~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~ 247 (500)
T 1z63_A 173 ----KEL-KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYD 247 (500)
T ss_dssp ----HTS-CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTC
T ss_pred ----Hhh-ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccc
Confidence 112 2456799999963 2333322 221100 00111111000
Q ss_pred ----cccccee-EEEeeccCChhH-HHHH---------------------------hh----------------------
Q 000114 696 ----RPVPLSQ-QYIGIQVKKPLQ-RFQL---------------------------MN---------------------- 720 (2158)
Q Consensus 696 ----rpv~l~~-~~~~~~~~~~~~-~~~~---------------------------l~---------------------- 720 (2158)
...|-.. ..+.+....... .+.. +.
T Consensus 248 ~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~ 327 (500)
T 1z63_A 248 KAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKM 327 (500)
T ss_dssp HHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHH
T ss_pred cchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhH
Confidence 0111111 111111110000 0000 00
Q ss_pred HHHHHHHHHHh-CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEE
Q 000114 721 DLCYEKVVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAI 799 (2158)
Q Consensus 721 ~~~~~~i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~ 799 (2158)
..+.+.+.+.. .+.++||||+++..+..++..|.... ...+..
T Consensus 328 ~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~------------------------------------~~~~~~ 371 (500)
T 1z63_A 328 IRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL------------------------------------NTEVPF 371 (500)
T ss_dssp HHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHH------------------------------------TCCCCE
T ss_pred HHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhh------------------------------------CCCeEE
Confidence 01112222222 36799999999999988888876531 133567
Q ss_pred ecCCCCHHHHHHHHHHHhCC-Cce-EEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCC
Q 000114 800 HHAGMTRGDRQLVEDLFGDG-HVQ-VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD 877 (2158)
Q Consensus 800 hHagl~~~~R~~v~~~F~~g-~i~-VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d 877 (2158)
+||+|+..+|..+++.|++| ..+ +||||.++++|+|+|++++||+++.++++. .+.||+||++|.|..
T Consensus 372 ~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~----------~~~Q~~gR~~R~Gq~ 441 (500)
T 1z63_A 372 LYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPA----------VEDQATDRVYRIGQT 441 (500)
T ss_dssp EETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC-------------CHHHHTTTTTTTT
T ss_pred EECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcc----------hHHHHHHHHHHcCCC
Confidence 79999999999999999998 565 799999999999999999999966666655 699999999999977
Q ss_pred CccEEEEEcCCCcH
Q 000114 878 SYGEGIIITGHSEL 891 (2158)
Q Consensus 878 ~~G~~iil~~~~~~ 891 (2158)
+...++.++..+..
T Consensus 442 ~~v~v~~lv~~~ti 455 (500)
T 1z63_A 442 RNVIVHKLISVGTL 455 (500)
T ss_dssp SCEEEEEEEETTSH
T ss_pred CeeEEEEEEeCCCH
Confidence 66666767666544
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-23 Score=272.89 Aligned_cols=322 Identities=16% Similarity=0.168 Sum_probs=204.2
Q ss_pred CCCCHHHHHHHHHHh---cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000114 1340 KHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~---~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~ 1416 (2158)
..++|+|.+++..+. ..+.++++++|||+|||+++...+. .+......+ +++||+| .+|+.|+.+++++ +..
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~-~~~~~~~~~--~~LIv~P-~~l~~qw~~e~~~-~~~ 110 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFS-DAKKENELT--PSLVICP-LSVLKNWEEELSK-FAP 110 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHH-HHHHTTCCS--SEEEEEC-STTHHHHHHHHHH-HCT
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHH-HHHhcCCCC--CEEEEcc-HHHHHHHHHHHHH-HCC
Confidence 479999999987653 4566799999999999999855444 444323334 7999999 5699999999984 443
Q ss_pred CCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHh
Q 000114 1417 GLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIAS 1496 (2158)
Q Consensus 1417 ~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~ 1496 (2158)
+.++..++|+... ......+|+|+|++.+..... .....+++||+||||.+.+.....+. .+ .
T Consensus 111 --~~~v~~~~g~~~~--~~~~~~~ivi~t~~~l~~~~~-----l~~~~~~~vIvDEaH~~kn~~~~~~~----~l----~ 173 (500)
T 1z63_A 111 --HLRFAVFHEDRSK--IKLEDYDIILTTYAVLLRDTR-----LKEVEWKYIVIDEAQNIKNPQTKIFK----AV----K 173 (500)
T ss_dssp --TSCEEECSSSTTS--CCGGGSSEEEEEHHHHTTCHH-----HHTCCEEEEEEETGGGGSCTTSHHHH----HH----H
T ss_pred --CceEEEEecCchh--ccccCCcEEEeeHHHHhccch-----hcCCCcCEEEEeCccccCCHhHHHHH----HH----H
Confidence 4678888886532 334567999999998753322 12346899999999999754321111 11 1
Q ss_pred hcCCCceEEEeccCCCC--hHHHH---HHhccCC-------------------------------CceEecCC-C-----
Q 000114 1497 QVENKIRIVALSTSLAN--AKDLG---EWIGATS-------------------------------HGLFNFPP-G----- 1534 (2158)
Q Consensus 1497 ~~~~~~riV~lSATl~n--~~dl~---~wl~~~~-------------------------------~~i~~f~~-~----- 1534 (2158)
.+. ..+.++||||+.. ..++. .|+.... ..++.... .
T Consensus 174 ~l~-~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~ 252 (500)
T 1z63_A 174 ELK-SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIIN 252 (500)
T ss_dssp TSC-EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHT
T ss_pred hhc-cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhh
Confidence 222 4577999999843 33332 2221110 00110000 0
Q ss_pred CcccccEEEEecccccc-----hHHHHHh---------------------------cC--------------hH----HH
Q 000114 1535 VRPVPLEIHIQGVDITN-----FEARMQA---------------------------MT--------------KP----TF 1564 (2158)
Q Consensus 1535 ~rpv~l~~~i~~~~~~~-----~~~~~~~---------------------------~~--------------k~----~~ 1564 (2158)
.-|......+ ..+... +...... .. .. ..
T Consensus 253 ~lp~~~~~~v-~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~ 331 (500)
T 1z63_A 253 DLPDKIETNV-YCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTM 331 (500)
T ss_dssp TSCSEEEEEE-EECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHH
T ss_pred cCCCCeEEEE-EcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHH
Confidence 0011111111 111100 0000000 00 00 11
Q ss_pred HHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCC
Q 000114 1565 TAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLN 1644 (2158)
Q Consensus 1565 ~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~ 1644 (2158)
..+.....++.++||||.++..+..++..| ....+..+..+||+++
T Consensus 332 ~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l----------------------------------~~~~~~~~~~~~g~~~ 377 (500)
T 1z63_A 332 EIIEEALDEGDKIAIFTQFVDMGKIIRNII----------------------------------EKELNTEVPFLYGELS 377 (500)
T ss_dssp HHHHHHHTTTCCEEEECSCHHHHHHHHHHH----------------------------------HHHHTCCCCEEETTSC
T ss_pred HHHHHHHccCCcEEEEEehHHHHHHHHHHH----------------------------------HHhhCCCeEEEECCCC
Confidence 222233356789999999999887777544 2223566889999999
Q ss_pred HHHHHHHHHHHHcC-Cce-EEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEE
Q 000114 1645 KTDQEVVSALFEAG-KIK-VCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2158)
Q Consensus 1645 ~~dR~~v~~~F~~g-~i~-VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~i 1722 (2158)
..+|..+++.|++| ..+ +|+||+++++|+|+|++.+|| +++.+.++..|.||+||++|.|..+...++
T Consensus 378 ~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi----------~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~ 447 (500)
T 1z63_A 378 KKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI----------HFDRWWNPAVEDQATDRVYRIGQTRNVIVH 447 (500)
T ss_dssp HHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEE----------ESSCCSCC---CHHHHTTTTTTTTSCEEEE
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEE----------EeCCCCCcchHHHHHHHHHHcCCCCeeEEE
Confidence 99999999999998 565 899999999999999988888 455677899999999999999977777777
Q ss_pred EEecCCh
Q 000114 1723 ILCHAPR 1729 (2158)
Q Consensus 1723 il~~~~~ 1729 (2158)
.++....
T Consensus 448 ~lv~~~t 454 (500)
T 1z63_A 448 KLISVGT 454 (500)
T ss_dssp EEEETTS
T ss_pred EEEeCCC
Confidence 7766553
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=252.18 Aligned_cols=227 Identities=18% Similarity=0.190 Sum_probs=142.7
Q ss_pred EEecccccCCCcccccccccccCCCCCCCCCcCCCCCCCccc------------ccChhHHHHHhc-CCCCCCHHHHHHH
Q 000114 1284 RVVSDKWLGSQTVLPVSFRHLILPEKYPPPTELLDLQPLPVT------------ALRNPLYEALYQ-GFKHFNPIQTQVF 1350 (2158)
Q Consensus 1284 ~~vSd~wlg~e~~~~i~~~~l~lp~~~~~~t~lldl~p~~~~------------~L~~~~~~~l~~-gf~~~~~iQ~q~~ 1350 (2158)
+..||.|.+.+....-+..++..|+..........++..... .+.....+.+.. ||..|+|+|.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i 85 (262)
T 3ly5_A 6 HHSSGVDLGTENLYFQSMNNVEKPDNDEDESEVPSLPLGLTGAFEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSI 85 (262)
T ss_dssp ----------------------------------------CCBSGGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHH
T ss_pred ccccccCccchhHHHHhhcccCCCccccccccCCCCccccccccccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHH
Confidence 346899999887666666666555543333322222211111 155566666665 7999999999999
Q ss_pred HHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc--CCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCC
Q 000114 1351 TVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS--ETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGE 1428 (2158)
Q Consensus 1351 ~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~--~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~ 1428 (2158)
+.++.+ .|++++||||||||++|++|+++.+.... ...+.++||++||++|+.|+++.+++ +....+..+..++|+
T Consensus 86 ~~~~~~-~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~-~~~~~~~~~~~~~g~ 163 (262)
T 3ly5_A 86 RPLLEG-RDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKE-LMTHHVHTYGLIMGG 163 (262)
T ss_dssp HHHHHT-CCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHH-HTTTCCSCEEEECSS
T ss_pred HHHhCC-CcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHH-HHhhcCceEEEEECC
Confidence 999986 55999999999999999999999887521 11234899999999999999999995 444458889999998
Q ss_pred cchhhh---cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEE
Q 000114 1429 TAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIV 1505 (2158)
Q Consensus 1429 ~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV 1505 (2158)
...... ....++|+|+||++|..++++.. ...+++++++|+||||++.+++ +...+..+...++...|++
T Consensus 164 ~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~-~~~~~~l~~lViDEah~l~~~~------~~~~l~~i~~~~~~~~q~l 236 (262)
T 3ly5_A 164 SNRSAEAQKLGNGINIIVATPGRLLDHMQNTP-GFMYKNLQCLVIDEADRILDVG------FEEELKQIIKLLPTRRQTM 236 (262)
T ss_dssp SCHHHHHHHHHHCCSEEEECHHHHHHHHHHCT-TCCCTTCCEEEECSHHHHHHTT------CHHHHHHHHHHSCSSSEEE
T ss_pred CCHHHHHHHhcCCCCEEEEcHHHHHHHHHccC-CcccccCCEEEEcChHHHhhhh------HHHHHHHHHHhCCCCCeEE
Confidence 765422 22457999999999988877643 2357889999999999988653 2233444445557789999
Q ss_pred EeccCCCC-hHHHHH
Q 000114 1506 ALSTSLAN-AKDLGE 1519 (2158)
Q Consensus 1506 ~lSATl~n-~~dl~~ 1519 (2158)
+||||+++ .++++.
T Consensus 237 ~~SAT~~~~v~~~~~ 251 (262)
T 3ly5_A 237 LFSATQTRKVEDLAR 251 (262)
T ss_dssp EECSSCCHHHHHHHH
T ss_pred EEEecCCHHHHHHHH
Confidence 99999986 344444
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-23 Score=250.55 Aligned_cols=187 Identities=19% Similarity=0.231 Sum_probs=149.7
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
+++.+...+ .||.+|+++|.++++.++.+ .|++++||||||||++|++|+++.+...... ...+.++||++||
T Consensus 61 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~----~~~~~~~lil~Pt 135 (262)
T 3ly5_A 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEG-RDLLAAAKTGSGKTLAFLIPAVELIVKLRFM----PRNGTGVLILSPT 135 (262)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHHT-CCCEECCCTTSCHHHHHHHHHHHHHHHTTCC----GGGCCCEEEECSS
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CcEEEEccCCCCchHHHHHHHHHHHHhcccc----ccCCceEEEEeCC
Confidence 456666666 79999999999999999987 5599999999999999999999998764321 1245689999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
++||.|+++.+++++...++.+..++|+....... ..+++|+|+||++|....+.... ..+.++++|||||||++.
T Consensus 136 ~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~-~~~~~l~~lViDEah~l~ 214 (262)
T 3ly5_A 136 RELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPG-FMYKNLQCLVIDEADRIL 214 (262)
T ss_dssp HHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTT-CCCTTCCEEEECSHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCC-cccccCCEEEEcChHHHh
Confidence 99999999999999988899999999988765433 24689999999998555554432 357789999999999988
Q ss_pred c-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc
Q 000114 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2158)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~ 683 (2158)
+ ++++.++.++.++ +..+|+++||||+| .++..+.+..
T Consensus 215 ~~~~~~~l~~i~~~~-------~~~~q~l~~SAT~~--~~v~~~~~~~ 253 (262)
T 3ly5_A 215 DVGFEEELKQIIKLL-------PTRRQTMLFSATQT--RKVEDLARIS 253 (262)
T ss_dssp HTTCHHHHHHHHHHS-------CSSSEEEEECSSCC--HHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhC-------CCCCeEEEEEecCC--HHHHHHHHHH
Confidence 7 5777777765543 56789999999998 4555555443
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.3e-23 Score=249.43 Aligned_cols=195 Identities=16% Similarity=0.265 Sum_probs=152.6
Q ss_pred CCCCCcccccChhHHHHHhc-CCCCCCHHHHHHHHHHhcC-CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEE
Q 000114 1318 DLQPLPVTALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVY 1395 (2158)
Q Consensus 1318 dl~p~~~~~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~-~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~ 1395 (2158)
+...+.-..|.....+.+.. ||..|+|+|.++++.++.+ +.|++++||||||||++|++|++.++... ..++++||
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~--~~~~~~li 167 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--NKYPQCLC 167 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT--SCSCCEEE
T ss_pred CcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc--CCCceEEE
Confidence 33444444567777777776 8999999999999999986 47799999999999999999999988763 23348999
Q ss_pred EcccHHHHHHHHHHHHHHhcCC-CCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccc
Q 000114 1396 IAPLEALAKERYRDWEIKFGQG-LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 1474 (2158)
Q Consensus 1396 IaP~raLa~q~~~~~~~~f~~~-~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH 1474 (2158)
++||++||.|+++.++ .++.. .++++..+.|+..........++|+|+||+++..++.+. ....++++++|||||||
T Consensus 168 l~PtreLa~Q~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~-~~~~l~~l~~lVlDEad 245 (300)
T 3fmo_B 168 LSPTYELALQTGKVIE-QMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-KFIDPKKIKVFVLDEAD 245 (300)
T ss_dssp ECSSHHHHHHHHHHHH-HHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTT-CCCCGGGCSEEEETTHH
T ss_pred EcCcHHHHHHHHHHHH-HHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhc-CCCChhhceEEEEeCHH
Confidence 9999999999999998 45443 478888888887765555566799999999998887653 23357899999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHh
Q 000114 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWI 1521 (2158)
Q Consensus 1475 ~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl 1521 (2158)
++.+..| +...+..+...++.+.|++++|||+++ ...++..+
T Consensus 246 ~l~~~~~-----~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~ 288 (300)
T 3fmo_B 246 VMIATQG-----HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKV 288 (300)
T ss_dssp HHHHSTT-----HHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHH
T ss_pred HHhhccC-----cHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHH
Confidence 9886433 334455556666788999999999987 34455444
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-22 Score=275.78 Aligned_cols=351 Identities=13% Similarity=0.140 Sum_probs=196.0
Q ss_pred CCCHHHHHHHHHHHcC-------------CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000114 495 QLNRVQSRVYKSALSS-------------ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~-------------~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ka 561 (2158)
.|+|+|.+|++.++.. +.+.++++|||||||+++ +++++.+.... ...++|||+|+++
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~--------~~~rvLvlvpr~e 341 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELD--------FIDKVFFVVDRKD 341 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCT--------TCCEEEEEECGGG
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcC--------CCceEEEEeCcHH
Confidence 6999999999998762 356999999999999998 66666554321 2348999999999
Q ss_pred HHHHHHHHHHhhcccCCcEEEEEeCCCccCH--hhh--ccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc
Q 000114 562 LVAEVVGNLSNRLQMYDVKVRELSGDQTLTR--QQI--EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2158)
Q Consensus 562 La~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~--~~~--~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d 637 (2158)
|+.|+.+.|..+... . +.|..+... ..+ ...+|+|+||+++..+.+.......+....+||+||||+...
T Consensus 342 L~~Q~~~~f~~f~~~-~-----v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~ 415 (1038)
T 2w00_A 342 LDYQTMKEYQRFSPD-S-----VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF 415 (1038)
T ss_dssp CCHHHHHHHHTTSTT-C-----SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH
T ss_pred HHHHHHHHHHHhccc-c-----cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc
Confidence 999999999885432 1 122222111 112 368999999999854443322122455778999999998642
Q ss_pred CChhhHHHHHHHHHHHHhhccccccEEEEccccCChH------HHHHHHhccccCceEEecC-----CcccccceeEEEe
Q 000114 638 NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYE------DVALFLRVNLEKGLFYFDN-----SYRPVPLSQQYIG 706 (2158)
Q Consensus 638 ~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~------dv~~~l~~~~~~~~~~f~~-----~~rpv~l~~~~~~ 706 (2158)
|..+..+. ...++.+++|||||+.... ....+++.. ++.+.- .-.-+|....+..
T Consensus 416 --~~~~~~I~--------~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~----i~~Y~l~~AI~dg~l~p~~v~y~~ 481 (1038)
T 2w00_A 416 --GEAQKNLK--------KKFKRYYQFGFTGTPIFPENALGSETTASVFGRE----LHSYVITDAIRDEKVLKFKVDYND 481 (1038)
T ss_dssp --HHHHHHHH--------HHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSE----EEEECHHHHHHHTSSCCEEEEECC
T ss_pred --hHHHHHHH--------HhCCcccEEEEeCCccccccchhhhHHHHHhCCe----eEeecHHHHHhCCCcCCeEEEEEe
Confidence 22222221 1234689999999976432 334444321 111100 0001122212221
Q ss_pred ecc-------C-C--------------hhHHHHHhhHHHHHHHHHHh-------CCCeEEEEecChHHHHHHHHHHHHHh
Q 000114 707 IQV-------K-K--------------PLQRFQLMNDLCYEKVVAVA-------GKHQVLIFVHSRKETAKTARAIRDTA 757 (2158)
Q Consensus 707 ~~~-------~-~--------------~~~~~~~l~~~~~~~i~~~~-------~~~~vLVFv~sr~~~~~~a~~L~~~~ 757 (2158)
+.. . . ...+...+...+........ .+.++||||+|+..|..++..|...+
T Consensus 482 v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~ 561 (1038)
T 2w00_A 482 VRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQ 561 (1038)
T ss_dssp CCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhh
Confidence 100 0 0 00111111121222222221 24589999999999999999998875
Q ss_pred hcc-------cccc--cccccCchhHHH-----HHhh--hhccCcc----hhhhhcc-----CCeEEecC-CCCHHHHHH
Q 000114 758 LEN-------DTLG--RFLKEDSVSREI-----LQSH--TDMVKSN----DLKDLLP-----YGFAIHHA-GMTRGDRQL 811 (2158)
Q Consensus 758 ~~~-------~~~~--~~~~~~~~~~~~-----l~~~--~~~~~~~----~l~~ll~-----~gv~~hHa-gl~~~~R~~ 811 (2158)
... ..+. ..+.. ..+.+. +..+ .....+. .+...+. +|-.+.+. +-....|..
T Consensus 562 ~~~~~~~~~~~~~k~avv~s~-~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~ 640 (1038)
T 2w00_A 562 EEAANKSATYKPLRIATIFSF-AANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRD 640 (1038)
T ss_dssp HHHTTTSSSCCCCCEEEECCC-CC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHH
T ss_pred hhhcccccccccCcEEEEEeC-CCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHH
Confidence 210 0000 00000 000000 0000 0000000 0000000 00000000 001235899
Q ss_pred HHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCC--CccEEEEEc
Q 000114 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYD--SYGEGIIIT 886 (2158)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d--~~G~~iil~ 886 (2158)
+.+.|++|.++|||+|+.+.+|+|+|.+.+++ +|.+. +...|+||+||+||.+.+ ..|.++-+.
T Consensus 641 i~~~Fk~g~i~ILIvvd~lltGfDiP~l~tly-----lDkpl------~~~~liQaIGRtnR~~~~~K~~G~IVdf~ 706 (1038)
T 2w00_A 641 LAQRVKNQDIDLLIVVGMFLTGFDAPTLNTLF-----VDKNL------RYHGLMQAFSRTNRIYDATKTFGNIVTFR 706 (1038)
T ss_dssp HHHHHHTTSSSEEEESSTTSSSCCCTTEEEEE-----EESCC------CHHHHHHHHHTTCCCCCTTCCSEEEEESS
T ss_pred HHHHHHcCCCeEEEEcchHHhCcCcccccEEE-----EccCC------CccceeehhhccCcCCCCCCCcEEEEEcc
Confidence 99999999999999999999999999997655 55443 667899999999998753 234444443
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.8e-23 Score=242.50 Aligned_cols=188 Identities=19% Similarity=0.198 Sum_probs=148.6
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.+++.+...+ .||.+|+++|.++++.++.+. +++++||||||||++|++|++..+...... ....+.++||++|
T Consensus 35 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~-~~l~~apTGsGKT~~~~l~~l~~l~~~~~~---~~~~~~~~lil~P 110 (242)
T 3fe2_A 35 NFPANVMDVIARQNFTEPTAIQAQGWPVALSGL-DMVGVAQTGSGKTLSYLLPAIVHINHQPFL---ERGDGPICLVLAP 110 (242)
T ss_dssp TCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTC-CEEEEECTTSCHHHHHHHHHHHHHHTSCCC---CTTCCCSEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCcCHHHHHHHHHHHHHHHhcccc---ccCCCCEEEEEeC
Confidence 3567776666 689999999999999988774 599999999999999999999998754321 1124568999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
|++|+.|+++.+.+++...++++..++|+....... ..+++|+|+||+++..+.+... ..+.++++|||||||++
T Consensus 111 t~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~--~~~~~~~~lViDEah~l 188 (242)
T 3fe2_A 111 TRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGK--TNLRRTTYLVLDEADRM 188 (242)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTS--CCCTTCCEEEETTHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC--CCcccccEEEEeCHHHH
Confidence 999999999999998888899999999988765432 3468999999999844433332 35788999999999998
Q ss_pred cc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc
Q 000114 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2158)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~ 683 (2158)
.+ ++++.++.++.+ .++..|++++|||+|+ ++..+....
T Consensus 189 ~~~~~~~~~~~i~~~-------~~~~~q~~~~SAT~~~--~~~~~~~~~ 228 (242)
T 3fe2_A 189 LDMGFEPQIRKIVDQ-------IRPDRQTLMWSATWPK--EVRQLAEDF 228 (242)
T ss_dssp HHTTCHHHHHHHHTT-------SCSSCEEEEEESCCCH--HHHHHHHHH
T ss_pred hhhCcHHHHHHHHHh-------CCccceEEEEEeecCH--HHHHHHHHH
Confidence 87 577777766543 3568899999999984 455555543
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.7e-23 Score=249.22 Aligned_cols=185 Identities=18% Similarity=0.241 Sum_probs=145.4
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA 557 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~ia 557 (2158)
.|++.+...+ .||.+|+++|.++++.++.+ +.|++++||||||||++|++|+++.+.... .++++||++
T Consensus 98 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~--------~~~~~lil~ 169 (300)
T 3fmo_B 98 RLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN--------KYPQCLCLS 169 (300)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS--------CSCCEEEEC
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccC--------CCceEEEEc
Confidence 3567766666 79999999999999999887 467999999999999999999999875432 345899999
Q ss_pred ccHHHHHHHHHHHHhhcccC-CcEEEEEeCCCccCHhhhccccEEEcchhHH-HHHHhccCCCccccccceEEeeccccc
Q 000114 558 PMKALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 558 P~kaLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
||++||.|+++.+..+.... ++.+..+.|+..........++|+|+||+++ +.+.+.. ...++++++|||||||++
T Consensus 170 PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~--~~~l~~l~~lVlDEad~l 247 (300)
T 3fmo_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLK--FIDPKKIKVFVLDEADVM 247 (300)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTC--CCCGGGCSEEEETTHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcC--CCChhhceEEEEeCHHHH
Confidence 99999999999999887654 6889999998887766667889999999997 4443322 245789999999999998
Q ss_pred ccC--ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccc
Q 000114 636 HDN--RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNL 684 (2158)
Q Consensus 636 ~d~--rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~ 684 (2158)
.+. ++..+..+ ....+..+|++++|||+++ ++..+.....
T Consensus 248 ~~~~~~~~~~~~i-------~~~~~~~~q~i~~SAT~~~--~v~~~a~~~l 289 (300)
T 3fmo_B 248 IATQGHQDQSIRI-------QRMLPRNCQMLLFSATFED--SVWKFAQKVV 289 (300)
T ss_dssp HHSTTHHHHHHHH-------HTTSCTTCEEEEEESCCCH--HHHHHHHHHS
T ss_pred hhccCcHHHHHHH-------HHhCCCCCEEEEEeccCCH--HHHHHHHHHC
Confidence 762 33333322 2334668999999999984 5555555443
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.5e-21 Score=244.88 Aligned_cols=347 Identities=16% Similarity=0.176 Sum_probs=232.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.++++|...--.+..| . |..+.||+|||++|.+|++-....+ ..+.+++|+..||.+-++.+..++
T Consensus 75 r~~dvQligg~~L~~G-~--iaEM~TGEGKTLva~lp~~lnAL~G-----------~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 75 RPFDVQVMGGIALHEG-K--VAEMKTGEGKTLAATMPIYLNALIG-----------KGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp CCCHHHHHHHHHHHTT-C--EEECCTTSCHHHHTHHHHHHHHTTS-----------SCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCC-C--hhhccCCCCccHHHHHHHHHHHhcC-----------CceEEEeccHHHHHhHHHHHHHHH
Confidence 5788898877755544 2 8899999999999999987554332 358999999999999999999999
Q ss_pred ccCCcEEEEEeCC--------------------------------------------------Cc-cCHhhhccccEEEc
Q 000114 575 QMYDVKVRELSGD--------------------------------------------------QT-LTRQQIEETQIIVT 603 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd--------------------------------------------------~~-~~~~~~~~~~IiV~ 603 (2158)
..+|++|+.++++ .+ ..++..-.++|+.+
T Consensus 141 ~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYg 220 (822)
T 3jux_A 141 LFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYG 220 (822)
T ss_dssp HHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEE
T ss_pred HHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEc
Confidence 9999999999872 11 12333457899999
Q ss_pred chhHH--HHHHhcc---CCCccccccceEEeecccccc-c-CChhh-----------HHHHHHHH---------------
Q 000114 604 TPEKW--DIITRKS---GDRTYTQLVKLLIIDEIHLLH-D-NRGPV-----------LESIVART--------------- 650 (2158)
Q Consensus 604 TPekl--d~l~r~~---~~~~~l~~v~lIIiDEaH~l~-d-~rg~~-----------le~iv~r~--------------- 650 (2158)
|..-+ |.|.-+. .+........+.||||+|.++ | .|.|. +-..+.++
T Consensus 221 Tn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek 300 (822)
T 3jux_A 221 TNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEK 300 (822)
T ss_dssp EHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCS
T ss_pred cCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcc
Confidence 99886 7766543 223345668899999999652 2 12111 00000000
Q ss_pred --------------------------------------HHHHhhc-----------------------------------
Q 000114 651 --------------------------------------VRQIETT----------------------------------- 657 (2158)
Q Consensus 651 --------------------------------------~~~~~~~----------------------------------- 657 (2158)
++.....
T Consensus 301 ~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQ 380 (822)
T 3jux_A 301 ARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQ 380 (822)
T ss_dssp SSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHH
T ss_pred cCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHH
Confidence 0000000
Q ss_pred --------------------------cccccEEEEccccCChHHHHHHHhccccCceEEecCCcccccceeE--EEeecc
Q 000114 658 --------------------------KEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQ--YIGIQV 709 (2158)
Q Consensus 658 --------------------------~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~--~~~~~~ 709 (2158)
..-.++.|||+|+.. +-..|.... .-. +...+..+|+.-... .+..
T Consensus 381 aiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~t--e~~Ef~~iY-~l~-vv~IPtnkp~~R~d~~d~vy~-- 454 (822)
T 3jux_A 381 AIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKT--EESEFVQVY-GME-VVVIPTHKPMIRKDHDDLVFR-- 454 (822)
T ss_dssp HHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGG--GHHHHHHHS-CCC-EEECCCSSCCCCEECCCEEES--
T ss_pred HHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCch--HHHHHHHHh-CCe-EEEECCCCCcceeecCcEEEe--
Confidence 001278999999874 233443332 222 333455566432221 1111
Q ss_pred CChhHHHHHhhHHHHHHHHHH-hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcch
Q 000114 710 KKPLQRFQLMNDLCYEKVVAV-AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSND 788 (2158)
Q Consensus 710 ~~~~~~~~~l~~~~~~~i~~~-~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 788 (2158)
....+...+.. .+.+. ..+.|+||||+|++.++.++..|...++.
T Consensus 455 -t~~eK~~al~~----~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~----------------------------- 500 (822)
T 3jux_A 455 -TQKEKYEKIVE----EIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIP----------------------------- 500 (822)
T ss_dssp -SHHHHHHHHHH----HHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCC-----------------------------
T ss_pred -cHHHHHHHHHH----HHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCC-----------------------------
Confidence 22233333332 23322 24789999999999999999999876543
Q ss_pred hhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCC--------ceEEEEecccccCCCCCccccCC
Q 000114 789 LKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLP--------AHTVIIKGTQIYNPEKGAWTELS 860 (2158)
Q Consensus 789 l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP--------~v~vVI~~~~~yd~~~g~~~~~s 860 (2158)
...+||++...+|..+...|+.| .|+|||++++||+|++ +..+||+ |+.+. |
T Consensus 501 --------~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVIn----te~Pe------s 560 (822)
T 3jux_A 501 --------HQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIG----TERHE------S 560 (822)
T ss_dssp --------CEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEE----SSCCS------S
T ss_pred --------EEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEe----cCCCC------C
Confidence 34569998777777777778777 6999999999999998 6679999 66655 7
Q ss_pred HHHHHHhhcccCCCCCCCccEEEEEcCCCcH-------HHHHHh-----hcCCCcccchhhHhhHHHHH
Q 000114 861 PLDIMQMLGRAGRPQYDSYGEGIIITGHSEL-------RYYLSL-----MNQQLPIESQFVSKLADQLN 917 (2158)
Q Consensus 861 ~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~-------~~y~~l-----l~~~~pieS~l~~~l~d~ln 917 (2158)
...|.||+||+||.| ..|.++.+++..+. +....+ +....||++.+.++..++..
T Consensus 561 ~r~y~qriGRTGRqG--~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~~~~~~i~~~~v~~~ie~AQ 627 (822)
T 3jux_A 561 RRIDNQLRGRAGRQG--DPGESIFFLSLEDDLLRIFGSEQIGKVMNILKIEEGQPIQHPMLSKLIENIQ 627 (822)
T ss_dssp HHHHHHHHTTSSCSS--CCCEEEEEEETTSHHHHHTTHHHHHHHHHHSSCCSSSCBCCHHHHHHHHHHH
T ss_pred HHHHHHhhCccccCC--CCeeEEEEechhHHHHHhhhHHHHHHHHHHcCCCCCceeccHHHHHHHHHHH
Confidence 889999999999988 77999998887652 122222 24567999988887655443
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-22 Score=241.72 Aligned_cols=183 Identities=20% Similarity=0.229 Sum_probs=145.2
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++++...+ .||..|+++|.++++.++.+ .+++++||||||||++|++++++.+.... .+.++||++|+
T Consensus 50 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKT~~~~~~il~~l~~~~--------~~~~~lil~Pt 120 (249)
T 3ber_A 50 VTDVLCEACDQLGWTKPTKIQIEAIPLALQG-RDIIGLAETGSGKTGAFALPILNALLETP--------QRLFALVLTPT 120 (249)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHHSC--------CSSCEEEECSS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC-CCEEEEcCCCCCchhHhHHHHHHHHhcCC--------CCceEEEEeCC
Confidence 577777777 78999999999999998877 45999999999999999999999887642 24589999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
++|+.|+++.++++....++++..++|+.....+. ..+++|+|+||+++....+.... ..+.++++||+||||++.
T Consensus 121 r~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~-~~l~~~~~lViDEah~l~ 199 (249)
T 3ber_A 121 RELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKG-FNLRALKYLVMDEADRIL 199 (249)
T ss_dssp HHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTT-CCCTTCCEEEECSHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCC-cCccccCEEEEcChhhhh
Confidence 99999999999998888889999999987654332 35789999999998444333221 346789999999999887
Q ss_pred c-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc
Q 000114 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2158)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~ 683 (2158)
+ .++..+..++. ..+...|++++|||+++ ++..+....
T Consensus 200 ~~~~~~~l~~i~~-------~~~~~~~~l~~SAT~~~--~v~~~~~~~ 238 (249)
T 3ber_A 200 NMDFETEVDKILK-------VIPRDRKTFLFSATMTK--KVQKLQRAA 238 (249)
T ss_dssp HTTCHHHHHHHHH-------SSCSSSEEEEEESSCCH--HHHHHHHHH
T ss_pred ccChHHHHHHHHH-------hCCCCCeEEEEeccCCH--HHHHHHHHH
Confidence 6 56666665543 23567899999999983 455555443
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-22 Score=236.32 Aligned_cols=193 Identities=19% Similarity=0.226 Sum_probs=141.6
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.+++.+.+.+ .||.+|+++|.++++.++.+ .+++++||||||||++|++|++..+...... .....+.++||++|
T Consensus 26 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~--~~~~~~~~~lil~P 102 (228)
T 3iuy_A 26 QQYPDLLKSIIRVGILKPTPIQSQAWPIILQG-IDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS--REQRNGPGMLVLTP 102 (228)
T ss_dssp TTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHC-----------CCCSEEEECS
T ss_pred ccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHhccch--hhccCCCcEEEEeC
Confidence 3556666665 68999999999999998876 4599999999999999999999887543211 01124568999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHh---hhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
+++|+.|+++.+.+.. ..++++..++|+...... ...+++|+|+||+++..+.+... ..++++++|||||||++
T Consensus 103 t~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~--~~~~~~~~lViDEah~~ 179 (228)
T 3iuy_A 103 TRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNS--VNLRSITYLVIDEADKM 179 (228)
T ss_dssp SHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTC--CCCTTCCEEEECCHHHH
T ss_pred CHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC--cCcccceEEEEECHHHH
Confidence 9999999999999864 457889999988765533 24578999999999855444432 45788999999999998
Q ss_pred cc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCce
Q 000114 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGL 688 (2158)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~ 688 (2158)
.+ +++..++.++.+ ...+.|++++|||+| .++..+.......+.
T Consensus 180 ~~~~~~~~~~~i~~~-------~~~~~~~l~~SAT~~--~~~~~~~~~~l~~p~ 224 (228)
T 3iuy_A 180 LDMEFEPQIRKILLD-------VRPDRQTVMTSATWP--DTVRQLALSYLKDPM 224 (228)
T ss_dssp HHTTCHHHHHHHHHH-------SCSSCEEEEEESCCC--HHHHHHHHTTCSSCE
T ss_pred hccchHHHHHHHHHh-------CCcCCeEEEEEeeCC--HHHHHHHHHHCCCCE
Confidence 76 577777766543 356889999999998 456666655443333
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=240.93 Aligned_cols=195 Identities=19% Similarity=0.297 Sum_probs=147.0
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.+++.+.+.+ .||.+|+++|.++++.++.++ +++++||||||||++|++|++..+.... ..+.++||++|
T Consensus 35 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~-~~l~~a~TGsGKT~~~~l~~l~~l~~~~-------~~~~~~lil~P 106 (245)
T 3dkp_A 35 KINSRLLQNILDAGFQMPTPIQMQAIPVMLHGR-ELLASAPTGSGKTLAFSIPILMQLKQPA-------NKGFRALIISP 106 (245)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTC-CEEEECCTTSCHHHHHHHHHHHHHCSCC-------SSSCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCCcHHHHHHHHHHHHHhhcc-------cCCceEEEEeC
Confidence 5677777766 699999999999999988875 5999999999999999999999885432 13568999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCH----hhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR----QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~----~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
+++|+.|+++.+.+.+...++++..++|+..... ....+++|+|+||+++..+.+.......+.++++|||||||+
T Consensus 107 t~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~ 186 (245)
T 3dkp_A 107 TRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDK 186 (245)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHH
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHH
Confidence 9999999999999998888888888877543221 123578999999999866655543335678899999999999
Q ss_pred ccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCce
Q 000114 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGL 688 (2158)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~ 688 (2158)
+.+ .++...+.+. ++.. .....+.|+++||||+| .++..|+......+.
T Consensus 187 ~~~~~~~~~~~~~~-~i~~--~~~~~~~~~~~~SAT~~--~~v~~~~~~~l~~p~ 236 (245)
T 3dkp_A 187 LFEDGKTGFRDQLA-SIFL--ACTSHKVRRAMFSATFA--YDVEQWCKLNLDNVI 236 (245)
T ss_dssp HHHHC--CHHHHHH-HHHH--HCCCTTCEEEEEESSCC--HHHHHHHHHHSSSCE
T ss_pred hcccccccHHHHHH-HHHH--hcCCCCcEEEEEeccCC--HHHHHHHHHhCCCCE
Confidence 876 2222233222 2221 12345789999999998 578888876654433
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-22 Score=235.92 Aligned_cols=189 Identities=21% Similarity=0.340 Sum_probs=146.2
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++++.+.+ .||.+|+++|.++++.++.+ .+++++||||||||++|++++++.+.... .+.++||++|+
T Consensus 11 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~--------~~~~~lil~Pt 81 (219)
T 1q0u_A 11 FQPFIIEAIKTLRFYKPTEIQERIIPGALRG-ESMVGQSQTGTGKTHAYLLPIMEKIKPER--------AEVQAVITAPT 81 (219)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHHT-CCEEEECCSSHHHHHHHHHHHHHHCCTTS--------CSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHhCc--------CCceEEEEcCc
Confidence 567777776 68999999999999999887 55999999999999999999999875431 34589999999
Q ss_pred HHHHHHHHHHHHhhcccC----CcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeecc
Q 000114 560 KALVAEVVGNLSNRLQMY----DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEI 632 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~----gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEa 632 (2158)
++|+.|+++.+.+..... ++++..++|+....... ..+++|+|+||+++..+.+... ..+.++++||||||
T Consensus 82 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~--~~~~~~~~lViDEa 159 (219)
T 1q0u_A 82 RELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQA--LDVHTAHILVVDEA 159 (219)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTC--CCGGGCCEEEECSH
T ss_pred HHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCC--CCcCcceEEEEcCc
Confidence 999999999999887765 78899999987654332 2367999999999854444322 45678999999999
Q ss_pred ccccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCceEE
Q 000114 633 HLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFY 690 (2158)
Q Consensus 633 H~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~~~~ 690 (2158)
|.+.+ .++..++.++. ..+...|++++|||+|+ ++..++......+...
T Consensus 160 h~~~~~~~~~~l~~i~~-------~~~~~~~~l~~SAT~~~--~~~~~~~~~~~~p~~~ 209 (219)
T 1q0u_A 160 DLMLDMGFITDVDQIAA-------RMPKDLQMLVFSATIPE--KLKPFLKKYMENPTFV 209 (219)
T ss_dssp HHHHHTTCHHHHHHHHH-------TSCTTCEEEEEESCCCG--GGHHHHHHHCSSCEEE
T ss_pred hHHhhhChHHHHHHHHH-------hCCcccEEEEEecCCCH--HHHHHHHHHcCCCeEE
Confidence 99876 46555555443 23567899999999984 6666766554444433
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-22 Score=229.76 Aligned_cols=182 Identities=20% Similarity=0.306 Sum_probs=143.7
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++.+...+ .||.+|+++|.++++.++.+ .+++++||||||||++|++|++..+.... .+.++||++|+
T Consensus 10 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~apTGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~Pt 80 (206)
T 1vec_A 10 LKRELLMGIFEMGWEKPSPIQEESIPIALSG-RDILARAKNGTGKSGAYLIPLLERLDLKK--------DNIQAMVIVPT 80 (206)
T ss_dssp CCHHHHHHHHTTTCCSCCHHHHHHHHHHHTT-CCEEEECCSSSTTHHHHHHHHHHHCCTTS--------CSCCEEEECSC
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHccC-CCEEEECCCCCchHHHHHHHHHHHhcccC--------CCeeEEEEeCc
Confidence 567777766 68999999999999998877 56999999999999999999998865321 34589999999
Q ss_pred HHHHHHHHHHHHhhcccC-CcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccc
Q 000114 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
++|+.|+++.+.+.+... ++++..++|+....... ...++|+|+||+++....++.. ..+.++++||+||||++
T Consensus 81 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~lViDEah~~ 158 (206)
T 1vec_A 81 RELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGV--AKVDHVQMIVLDEADKL 158 (206)
T ss_dssp HHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC--SCCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCC--cCcccCCEEEEEChHHh
Confidence 999999999999988766 78999999987755432 3568999999999844443322 45678999999999988
Q ss_pred cc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc
Q 000114 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2158)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~ 683 (2158)
.+ .++..++.++.. .+...|++++|||+| .++..++...
T Consensus 159 ~~~~~~~~l~~i~~~-------~~~~~~~l~~SAT~~--~~~~~~~~~~ 198 (206)
T 1vec_A 159 LSQDFVQIMEDIILT-------LPKNRQILLYSATFP--LSVQKFMNSH 198 (206)
T ss_dssp TSTTTHHHHHHHHHH-------SCTTCEEEEEESCCC--HHHHHHHHHH
T ss_pred HhhCcHHHHHHHHHh-------CCccceEEEEEeeCC--HHHHHHHHHH
Confidence 76 566666655433 345789999999998 4566666543
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.5e-22 Score=233.56 Aligned_cols=184 Identities=18% Similarity=0.249 Sum_probs=145.6
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++++...+ .||..|+++|.++++.++.+ .|++++||||+|||++|+++++..+.... .+.++||++|+
T Consensus 31 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~l~~a~TGsGKT~~~~l~~l~~l~~~~--------~~~~~lil~Pt 101 (230)
T 2oxc_A 31 LSRPVLEGLRAAGFERPSPVQLKAIPLGRCG-LDLIVQAKSGTGKTCVFSTIALDSLVLEN--------LSTQILILAPT 101 (230)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHCCTTS--------CSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCcHHHHHHHHHHHHHHhcC--------CCceEEEEeCC
Confidence 577777766 78999999999999998876 56999999999999999999998875421 24589999999
Q ss_pred HHHHHHHHHHHHhhcccC-CcEEEEEeCCCccCHh--hhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccc
Q 000114 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
++|+.|+++.+.++.... ++++..++|+...... ...+++|+|+||+++..+.+... ..+.++++||+||||++.
T Consensus 102 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~--~~~~~~~~lViDEah~~~ 179 (230)
T 2oxc_A 102 REIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDY--LNPGSIRLFILDEADKLL 179 (230)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTS--SCGGGCCEEEESSHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCC--cccccCCEEEeCCchHhh
Confidence 999999999999987655 8899999998765443 34578999999999854444322 456789999999999987
Q ss_pred c-C-ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcccc
Q 000114 637 D-N-RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLE 685 (2158)
Q Consensus 637 d-~-rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~ 685 (2158)
+ + ++..++.++.+ .+...|++++|||+| .++..++.....
T Consensus 180 ~~~~~~~~~~~i~~~-------~~~~~~~l~lSAT~~--~~~~~~~~~~~~ 221 (230)
T 2oxc_A 180 EEGSFQEQINWIYSS-------LPASKQMLAVSATYP--EFLANALTKYMR 221 (230)
T ss_dssp STTSSHHHHHHHHHH-------SCSSCEEEEEESCCC--HHHHHHHTTTCS
T ss_pred cCcchHHHHHHHHHh-------CCCCCeEEEEEeccC--HHHHHHHHHHcC
Confidence 6 3 66666655443 355789999999988 567777765433
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.2e-22 Score=235.67 Aligned_cols=185 Identities=17% Similarity=0.221 Sum_probs=143.2
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc---CCCceEEEEEcccHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAPLEAL 1402 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~---~~~~~~~v~IaP~raL 1402 (2158)
++......+.. ||..|+|+|.++++.++.+ .+++++||||||||++|++|++..+.... ...++++||++|+++|
T Consensus 36 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g-~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L 114 (242)
T 3fe2_A 36 FPANVMDVIARQNFTEPTAIQAQGWPVALSG-LDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTREL 114 (242)
T ss_dssp CCHHHHHHHHTTTCCSCCHHHHHHHHHHHHT-CCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHH
Confidence 55566666665 7999999999999999985 45999999999999999999999887531 1223489999999999
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh---cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC
Q 000114 1403 AKERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2158)
Q Consensus 1403 a~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~ 1479 (2158)
+.|+++.+++ +....++++..++|+...... ....++|+|+||+++..++++. ...+++++++|+||||++.+.
T Consensus 115 ~~Q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~--~~~~~~~~~lViDEah~l~~~ 191 (242)
T 3fe2_A 115 AQQVQQVAAE-YCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG--KTNLRRTTYLVLDEADRMLDM 191 (242)
T ss_dssp HHHHHHHHHH-HHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHT--SCCCTTCCEEEETTHHHHHHT
T ss_pred HHHHHHHHHH-HHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC--CCCcccccEEEEeCHHHHhhh
Confidence 9999999984 444457889999998765422 2345799999999998887663 345789999999999998865
Q ss_pred CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHh
Q 000114 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWI 1521 (2158)
Q Consensus 1480 ~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl 1521 (2158)
+ +...+..+...++.+.|++++|||+++ .++++..+
T Consensus 192 ~------~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~ 228 (242)
T 3fe2_A 192 G------FEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDF 228 (242)
T ss_dssp T------CHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHH
T ss_pred C------cHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHH
Confidence 4 233344445566778999999999986 34444433
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-21 Score=265.69 Aligned_cols=349 Identities=13% Similarity=0.194 Sum_probs=201.8
Q ss_pred CCCHHHHHHHHHHhcC-------------CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHH
Q 000114 1341 HFNPIQTQVFTVLYNT-------------DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERY 1407 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~-------------~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~ 1407 (2158)
.++|+|.+|++.++.. +.+.++++|||||||+++ +++++.+... +...++|||+|+++|+.|+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~--~~~~rvLvlvpr~eL~~Q~~ 347 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL--DFIDKVFFVVDRKDLDYQTM 347 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC--TTCCEEEEEECGGGCCHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc--CCCceEEEEeCcHHHHHHHH
Confidence 5999999999998751 356999999999999998 6666655442 22239999999999999999
Q ss_pred HHHHHHhcCCCCcEEEEEcCCcc-hh-hhcc--cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCCh
Q 000114 1408 RDWEIKFGQGLGMRVVELTGETA-MD-LKLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2158)
Q Consensus 1408 ~~~~~~f~~~~g~~v~~ltG~~~-~~-~~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~ 1483 (2158)
+.+. .|... . +.|..+ .. .+.+ ..++|+|+||+++..++........+....+||+||||+... |.
T Consensus 348 ~~f~-~f~~~---~---v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~--~~- 417 (1038)
T 2w00_A 348 KEYQ-RFSPD---S---VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF--GE- 417 (1038)
T ss_dssp HHHH-TTSTT---C---SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH--HH-
T ss_pred HHHH-Hhccc---c---cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc--hH-
Confidence 9888 56532 1 122222 11 1222 356999999999988765422122356789999999998642 11
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEeccCCCCh------HHHHHHhccCCCceEecCC-----CCcccccEEEEecccccch
Q 000114 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANA------KDLGEWIGATSHGLFNFPP-----GVRPVPLEIHIQGVDITNF 1552 (2158)
Q Consensus 1484 ~e~~isrl~~i~~~~~~~~riV~lSATl~n~------~dl~~wl~~~~~~i~~f~~-----~~rpv~l~~~i~~~~~~~~ 1552 (2158)
.... +...++ +.+++|||||+... .....++|.. ++.+.- ..--+|+.+....... .+
T Consensus 418 ---~~~~---I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~---i~~Y~l~~AI~dg~l~p~~v~y~~v~~-~~ 486 (1038)
T 2w00_A 418 ---AQKN---LKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRE---LHSYVITDAIRDEKVLKFKVDYNDVRP-QF 486 (1038)
T ss_dssp ---HHHH---HHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSE---EEEECHHHHHHHTSSCCEEEEECCCCG-GG
T ss_pred ---HHHH---HHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCe---eEeecHHHHHhCCCcCCeEEEEEeccc-hh
Confidence 2222 223333 57999999998753 2345555532 111110 0011222322221110 00
Q ss_pred H--------HHHHh-------cCh----HHHHHHHHhHh----------cCCCEEEEecChHHHHHHHHHHHhhccc---
Q 000114 1553 E--------ARMQA-------MTK----PTFTAIVQHAK----------NEKPALVFVPSRKYVRLTAVDLMTYSSM--- 1600 (2158)
Q Consensus 1553 ~--------~~~~~-------~~k----~~~~~i~~~~~----------~~~~~IVFv~sr~~~~~~a~~L~~~~~~--- 1600 (2158)
. ..... ... .....+..+.. .+.++||||+|+..|..++..|......
T Consensus 487 ~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~ 566 (1038)
T 2w00_A 487 KSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAAN 566 (1038)
T ss_dssp HHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred hhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcc
Confidence 0 00000 011 11222333221 2357999999999999999888664310
Q ss_pred --CCc--ccc-cccCCCc------------ccchhh-HhhhhHHH-------HHHHhcccEEEecC-CCCHHHHHHHHHH
Q 000114 1601 --DGD--QKS-AFLLWPA------------EEVEPF-IDNIQEEM-------LKATLRHGVGYLHE-GLNKTDQEVVSAL 1654 (2158)
Q Consensus 1601 --~~~--~~~-~~l~~~~------------~~l~~~-~~~i~d~~-------L~~~l~~gv~~~H~-~l~~~dR~~v~~~ 1654 (2158)
... ... ..++.+. +..... ...-.... ....++.. +.+. +-...+|..+.+.
T Consensus 567 ~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~--~~~~~~~~~~~R~~i~~~ 644 (1038)
T 2w00_A 567 KSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTN--FSTDSNGFQNYYRDLAQR 644 (1038)
T ss_dssp TSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCC--CCSSHHHHHHHHHHHHHH
T ss_pred cccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhccc--ccccchhhhHHHHHHHHH
Confidence 000 000 0111100 000000 00000000 11111110 0000 0113468999999
Q ss_pred HHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCC--CceEEEEEec
Q 000114 1655 FEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLD--NSGKCVILCH 1726 (2158)
Q Consensus 1655 F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d--~~G~~iil~~ 1726 (2158)
|++|.++|||+|+.+.+|+|+|.+.+++ .+.|.+...|+|++||+||.+.+ ..|.++-+..
T Consensus 645 Fk~g~i~ILIvvd~lltGfDiP~l~tly-----------lDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 645 VKNQDIDLLIVVGMFLTGFDAPTLNTLF-----------VDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHTTSSSEEEESSTTSSSCCCTTEEEEE-----------EESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred HHcCCCeEEEEcchHHhCcCcccccEEE-----------EccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 9999999999999999999999997765 23566788999999999998743 3466665554
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.7e-22 Score=233.07 Aligned_cols=186 Identities=17% Similarity=0.258 Sum_probs=143.5
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
+++.+...+ .||..|+++|.++++.++.+ ++++++||||||||++|++|+++.+...... ...+.++||++|+
T Consensus 32 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~----~~~~~~~lil~Pt 106 (236)
T 2pl3_A 32 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQG-KDVLGAAKTGSGKTLAFLVPVLEALYRLQWT----STDGLGVLIISPT 106 (236)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHHTTCC----GGGCCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEEeCCCCcHHHHHHHHHHHHHHhhccc----ccCCceEEEEeCC
Confidence 566666666 68999999999999998877 4599999999999999999999988653211 1235689999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHh--hhccccEEEcchhHH-HHHHhccCCCccccccceEEeecccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
++|+.|+++.+.+++...++++..++|+...... ...+++|+|+||+++ +.+.+... ..+.++++||+||||++.
T Consensus 107 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~--~~~~~~~~lViDEah~~~ 184 (236)
T 2pl3_A 107 RELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVS--FHATDLQMLVLDEADRIL 184 (236)
T ss_dssp HHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSS--CCCTTCCEEEETTHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCC--cccccccEEEEeChHHHh
Confidence 9999999999999888888999999998765443 346789999999998 44433321 346789999999999887
Q ss_pred c-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc
Q 000114 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2158)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~ 683 (2158)
+ +++..+..++.+ .+...|++++|||+++ ++..+....
T Consensus 185 ~~~~~~~~~~i~~~-------~~~~~~~l~~SAT~~~--~~~~~~~~~ 223 (236)
T 2pl3_A 185 DMGFADTMNAVIEN-------LPKKRQTLLFSATQTK--SVKDLARLS 223 (236)
T ss_dssp HTTTHHHHHHHHHT-------SCTTSEEEEEESSCCH--HHHHHHHHS
T ss_pred cCCcHHHHHHHHHh-------CCCCCeEEEEEeeCCH--HHHHHHHHh
Confidence 6 466666655443 3567899999999983 455555443
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.88 E-value=6.3e-22 Score=235.88 Aligned_cols=193 Identities=17% Similarity=0.242 Sum_probs=144.6
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCC-CCCCCCcEEEEEcc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDG-SFNHSNYKIVYVAP 558 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~-~~~~~~~kil~iaP 558 (2158)
|++++...+ .||.+|+++|.++++.++.+ .+++++||||||||++|++|+++.+.......+ .....++++||++|
T Consensus 30 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~-~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~P 108 (253)
T 1wrb_A 30 LDPTIRNNILLASYQRPTPIQKNAIPAILEH-RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAP 108 (253)
T ss_dssp CCCSTTTTTTTTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEEC
Confidence 455555555 58999999999999998887 459999999999999999999998875431100 01123468999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
+++|+.|+++.+.++....++++..++|+....... ..+++|+|+||+++..+.+... ..+.++++||+||||++
T Consensus 109 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~--~~~~~~~~lViDEah~~ 186 (253)
T 1wrb_A 109 TRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNK--ISLEFCKYIVLDEADRM 186 (253)
T ss_dssp SHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTS--BCCTTCCEEEEETHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCC--CChhhCCEEEEeCHHHH
Confidence 999999999999998877788999999987655432 3468999999999854444332 35678999999999998
Q ss_pred cc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhc
Q 000114 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682 (2158)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~ 682 (2158)
.+ .++..+..++.++. .......|++++|||+++ ++..+...
T Consensus 187 ~~~~~~~~~~~i~~~~~---~~~~~~~q~l~~SAT~~~--~~~~~~~~ 229 (253)
T 1wrb_A 187 LDMGFEPQIRKIIEESN---MPSGINRQTLMFSATFPK--EIQKLAAD 229 (253)
T ss_dssp HHTTCHHHHHHHHHSSC---CCCGGGCEEEEEESSCCH--HHHHHHHH
T ss_pred HhCchHHHHHHHHhhcc---CCCCCCcEEEEEEEeCCH--HHHHHHHH
Confidence 76 57777777665321 011226899999999984 45555543
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=223.76 Aligned_cols=176 Identities=21% Similarity=0.300 Sum_probs=137.2
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
|++...+.+.. ||..|+|+|.++++.++++ .+++++||||||||++|++|++..+..... ++++||++|+++|+.|
T Consensus 10 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~apTGsGKT~~~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q 86 (206)
T 1vec_A 10 LKRELLMGIFEMGWEKPSPIQEESIPIALSG-RDILARAKNGTGKSGAYLIPLLERLDLKKD--NIQAMVIVPTRELALQ 86 (206)
T ss_dssp CCHHHHHHHHTTTCCSCCHHHHHHHHHHHTT-CCEEEECCSSSTTHHHHHHHHHHHCCTTSC--SCCEEEECSCHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHccC-CCEEEECCCCCchHHHHHHHHHHHhcccCC--CeeEEEEeCcHHHHHH
Confidence 55666777766 7999999999999999875 569999999999999999999988765322 3489999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCC
Q 000114 1406 RYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2158)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~ 1482 (2158)
+++.+++......+.++..++|+..... .....++|+|+||+++..++.+ ....+++++++|+||||++.+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~lViDEah~~~~~~-- 162 (206)
T 1vec_A 87 VSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK--GVAKVDHVQMIVLDEADKLLSQD-- 162 (206)
T ss_dssp HHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEETHHHHTSTT--
T ss_pred HHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHc--CCcCcccCCEEEEEChHHhHhhC--
Confidence 9999985443333788999999876542 2334579999999999877765 23457889999999999987643
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEeccCCCC
Q 000114 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1483 ~~e~~isrl~~i~~~~~~~~riV~lSATl~n 1513 (2158)
+...+..+...++.+.+++++|||+++
T Consensus 163 ----~~~~l~~i~~~~~~~~~~l~~SAT~~~ 189 (206)
T 1vec_A 163 ----FVQIMEDIILTLPKNRQILLYSATFPL 189 (206)
T ss_dssp ----THHHHHHHHHHSCTTCEEEEEESCCCH
T ss_pred ----cHHHHHHHHHhCCccceEEEEEeeCCH
Confidence 223333344445668999999999975
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=8e-22 Score=233.81 Aligned_cols=189 Identities=24% Similarity=0.364 Sum_probs=141.2
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
.+.....+.+.. ||..|+|+|.++++.+++++ +++++||||||||++|++|++..+... ...++++||++|+++|+.
T Consensus 35 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~-~~l~~a~TGsGKT~~~~l~~l~~l~~~-~~~~~~~lil~Pt~~L~~ 112 (245)
T 3dkp_A 35 KINSRLLQNILDAGFQMPTPIQMQAIPVMLHGR-ELLASAPTGSGKTLAFSIPILMQLKQP-ANKGFRALIISPTRELAS 112 (245)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTC-CEEEECCTTSCHHHHHHHHHHHHHCSC-CSSSCCEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCC-CEEEECCCCCcHHHHHHHHHHHHHhhc-ccCCceEEEEeCCHHHHH
Confidence 355566666765 79999999999999999854 599999999999999999999988652 223348999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcchhh----hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCC
Q 000114 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDL----KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~ltG~~~~~~----~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~ 1480 (2158)
|+++.+++ +....+.++..++|+..... .....++|+|+||+++..++++......+++++++|+||||++.++.
T Consensus 113 q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~ 191 (245)
T 3dkp_A 113 QIHRELIK-ISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDG 191 (245)
T ss_dssp HHHHHHHH-HTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC
T ss_pred HHHHHHHH-HhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccc
Confidence 99999995 44445788888877654332 22345699999999999888775444568899999999999997653
Q ss_pred -CChHHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhc
Q 000114 1481 -GPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIG 1522 (2158)
Q Consensus 1481 -g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~ 1522 (2158)
+...+.+...+.. ..+.+.|+++||||+++ ++.+|+.
T Consensus 192 ~~~~~~~~~~i~~~---~~~~~~~~~~~SAT~~~--~v~~~~~ 229 (245)
T 3dkp_A 192 KTGFRDQLASIFLA---CTSHKVRRAMFSATFAY--DVEQWCK 229 (245)
T ss_dssp --CHHHHHHHHHHH---CCCTTCEEEEEESSCCH--HHHHHHH
T ss_pred cccHHHHHHHHHHh---cCCCCcEEEEEeccCCH--HHHHHHH
Confidence 2222333222222 22457899999999975 3444444
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=229.45 Aligned_cols=182 Identities=19% Similarity=0.286 Sum_probs=133.4
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc----CCCceEEEEEcccHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS----ETGVMRAVYIAPLEA 1401 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~----~~~~~~~v~IaP~ra 1401 (2158)
+.+...+.+.. ||..|+|+|.++++.++++ .|++++||||||||++|++|++..+.... ...++++||++|+++
T Consensus 27 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~ 105 (228)
T 3iuy_A 27 QYPDLLKSIIRVGILKPTPIQSQAWPIILQG-IDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRE 105 (228)
T ss_dssp TCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHH
Confidence 44455666655 7999999999999999875 55999999999999999999998875421 112348999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC
Q 000114 1402 LAKERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2158)
Q Consensus 1402 La~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~ 1478 (2158)
|+.|+++.++ .+.. .+.++..++|+..... .....++|+|+||+++..+... ....+++++++|+||||++.+
T Consensus 106 L~~q~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~--~~~~~~~~~~lViDEah~~~~ 181 (228)
T 3iuy_A 106 LALHVEAECS-KYSY-KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN--NSVNLRSITYLVIDEADKMLD 181 (228)
T ss_dssp HHHHHHHHHH-HHCC-TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT--TCCCCTTCCEEEECCHHHHHH
T ss_pred HHHHHHHHHH-Hhcc-cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcCcccceEEEEECHHHHhc
Confidence 9999999998 4543 3778888888766542 2334569999999999887765 334578999999999999876
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HHHHH
Q 000114 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGE 1519 (2158)
Q Consensus 1479 ~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~dl~~ 1519 (2158)
.. +...+..+...++.+.|++++|||+++. ++++.
T Consensus 182 ~~------~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~ 217 (228)
T 3iuy_A 182 ME------FEPQIRKILLDVRPDRQTVMTSATWPDTVRQLAL 217 (228)
T ss_dssp TT------CHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHH
T ss_pred cc------hHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHH
Confidence 53 2223333344456789999999999863 34433
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=227.84 Aligned_cols=180 Identities=23% Similarity=0.315 Sum_probs=137.9
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++.+...+ .||..|+++|.++++.++.+ .+++++||||||||++|++++++.+.... .+.++||++|+
T Consensus 21 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~~pTGsGKT~~~~~~~l~~l~~~~--------~~~~~lil~Pt 91 (224)
T 1qde_A 21 LDENLLRGVFGYGFEEPSAIQQRAIMPIIEG-HDVLAQAQSGTGKTGTFSIAALQRIDTSV--------KAPQALMLAPT 91 (224)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHCCTTC--------CSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CCEEEECCCCCcHHHHHHHHHHHHHhccC--------CCceEEEEECC
Confidence 567777666 58999999999999998877 45999999999999999999999875432 34589999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHh--hhccccEEEcchhHH-HHHHhccCCCccccccceEEeecccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
++|+.|+++.+.+.+...++++..++|+...... ....++|+|+||+++ +.+.+.. ..+.++++||+||||++.
T Consensus 92 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~---~~~~~~~~iViDEah~~~ 168 (224)
T 1qde_A 92 RELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRR---FRTDKIKMFILDEADEML 168 (224)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTS---SCCTTCCEEEEETHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCC---cchhhCcEEEEcChhHHh
Confidence 9999999999999888888999999998765443 234589999999997 4444332 456789999999999987
Q ss_pred c-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhc
Q 000114 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682 (2158)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~ 682 (2158)
+ .++..+..++.. .+...|++++|||+++ ++..++..
T Consensus 169 ~~~~~~~l~~i~~~-------~~~~~~~i~lSAT~~~--~~~~~~~~ 206 (224)
T 1qde_A 169 SSGFKEQIYQIFTL-------LPPTTQVVLLSATMPN--DVLEVTTK 206 (224)
T ss_dssp HTTCHHHHHHHHHH-------SCTTCEEEEEESSCCH--HHHHHHHH
T ss_pred hhhhHHHHHHHHHh-------CCccCeEEEEEeecCH--HHHHHHHH
Confidence 6 466555554432 3568899999999984 44444443
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=226.11 Aligned_cols=175 Identities=20% Similarity=0.290 Sum_probs=136.7
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
+.....+.+.. ||..|+|+|.++++.++++ .+++++||||||||++|.+|++..+.....+ .+++|++|+++|+.|
T Consensus 11 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~--~~~lil~Pt~~L~~q 87 (219)
T 1q0u_A 11 FQPFIIEAIKTLRFYKPTEIQERIIPGALRG-ESMVGQSQTGTGKTHAYLLPIMEKIKPERAE--VQAVITAPTRELATQ 87 (219)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHHT-CCEEEECCSSHHHHHHHHHHHHHHCCTTSCS--CCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHhCcCC--ceEEEEcCcHHHHHH
Confidence 44455566655 7999999999999999985 5599999999999999999999988653223 389999999999999
Q ss_pred HHHHHHHHhcCCC----CcEEEEEcCCcchhhh--c-ccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC
Q 000114 1406 RYRDWEIKFGQGL----GMRVVELTGETAMDLK--L-LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2158)
Q Consensus 1406 ~~~~~~~~f~~~~----g~~v~~ltG~~~~~~~--~-l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~ 1478 (2158)
+++.+++ +.... +.++..+.|+...... . ...++|+|+||+++..++++ ....+.+++++|+||||++.+
T Consensus 88 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~~~~ 164 (219)
T 1q0u_A 88 IYHETLK-ITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE--QALDVHTAHILVVDEADLMLD 164 (219)
T ss_dssp HHHHHHH-HHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT--TCCCGGGCCEEEECSHHHHHH
T ss_pred HHHHHHH-HhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc--CCCCcCcceEEEEcCchHHhh
Confidence 9999985 44333 6788888888765422 2 23569999999999887765 234578899999999999876
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC
Q 000114 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1479 ~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n 1513 (2158)
.+ +...+..+...++.+.|++++|||+++
T Consensus 165 ~~------~~~~l~~i~~~~~~~~~~l~~SAT~~~ 193 (219)
T 1q0u_A 165 MG------FITDVDQIAARMPKDLQMLVFSATIPE 193 (219)
T ss_dssp TT------CHHHHHHHHHTSCTTCEEEEEESCCCG
T ss_pred hC------hHHHHHHHHHhCCcccEEEEEecCCCH
Confidence 43 233444555556778999999999976
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=228.12 Aligned_cols=184 Identities=20% Similarity=0.267 Sum_probs=140.8
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
+.....+.+.. ||..|+|+|.++++.++.+ .|++++||||||||++|.+|++..+.....+ .++||++|+++|+.|
T Consensus 31 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~--~~~lil~Pt~~L~~q 107 (230)
T 2oxc_A 31 LSRPVLEGLRAAGFERPSPVQLKAIPLGRCG-LDLIVQAKSGTGKTCVFSTIALDSLVLENLS--TQILILAPTREIAVQ 107 (230)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHCCTTSCS--CCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCcHHHHHHHHHHHHHHhcCCC--ceEEEEeCCHHHHHH
Confidence 55556666655 7999999999999999875 5699999999999999999999887653333 389999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcchh--hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCCh
Q 000114 1406 RYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483 (2158)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~ltG~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~ 1483 (2158)
+++.+++......++++..++|+.... ...+..++|+|+||+++..+++. ....+++++++|+||||++.+.+ .
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~--~~~~~~~~~~lViDEah~~~~~~-~- 183 (230)
T 2oxc_A 108 IHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIEL--DYLNPGSIRLFILDEADKLLEEG-S- 183 (230)
T ss_dssp HHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHT--TSSCGGGCCEEEESSHHHHHSTT-S-
T ss_pred HHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhc--CCcccccCCEEEeCCchHhhcCc-c-
Confidence 999998543333478899999987653 34556789999999999887765 23457899999999999997643 1
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhc
Q 000114 1484 LEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIG 1522 (2158)
Q Consensus 1484 ~e~~isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~ 1522 (2158)
+.. .+..+...++...|++++|||+++. +.+++.
T Consensus 184 ~~~---~~~~i~~~~~~~~~~l~lSAT~~~~--~~~~~~ 217 (230)
T 2oxc_A 184 FQE---QINWIYSSLPASKQMLAVSATYPEF--LANALT 217 (230)
T ss_dssp SHH---HHHHHHHHSCSSCEEEEEESCCCHH--HHHHHT
T ss_pred hHH---HHHHHHHhCCCCCeEEEEEeccCHH--HHHHHH
Confidence 222 2233344456688999999998743 444443
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-21 Score=226.18 Aligned_cols=176 Identities=23% Similarity=0.331 Sum_probs=134.7
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
.+.....+.+.. ||..|+|+|.++++.++++ .|++++||||||||++|.+|++..+.....+ .+++|++|+++|+.
T Consensus 20 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~--~~~lil~Pt~~L~~ 96 (224)
T 1qde_A 20 ELDENLLRGVFGYGFEEPSAIQQRAIMPIIEG-HDVLAQAQSGTGKTGTFSIAALQRIDTSVKA--PQALMLAPTRELAL 96 (224)
T ss_dssp TCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHCCTTCCS--CCEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcC-CCEEEECCCCCcHHHHHHHHHHHHHhccCCC--ceEEEEECCHHHHH
Confidence 355566666665 7999999999999999875 5599999999999999999999988663333 38999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcchh--hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCC
Q 000114 1405 ERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~ltG~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~ 1482 (2158)
|+++.++ .+....++++..++|+.... ...+..++|+|+||+++...+.+ ....+.+++++|+||||++.+..
T Consensus 97 q~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~~-- 171 (224)
T 1qde_A 97 QIQKVVM-ALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR--RRFRTDKIKMFILDEADEMLSSG-- 171 (224)
T ss_dssp HHHHHHH-HHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHHHTT--
T ss_pred HHHHHHH-HHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHh--CCcchhhCcEEEEcChhHHhhhh--
Confidence 9999998 45555588899999987643 33455689999999999877765 23457889999999999987543
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEeccCCCC
Q 000114 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1483 ~~e~~isrl~~i~~~~~~~~riV~lSATl~n 1513 (2158)
+...+..+...++.+.|++++|||+++
T Consensus 172 ----~~~~l~~i~~~~~~~~~~i~lSAT~~~ 198 (224)
T 1qde_A 172 ----FKEQIYQIFTLLPPTTQVVLLSATMPN 198 (224)
T ss_dssp ----CHHHHHHHHHHSCTTCEEEEEESSCCH
T ss_pred ----hHHHHHHHHHhCCccCeEEEEEeecCH
Confidence 122333344445678999999999987
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=230.75 Aligned_cols=180 Identities=21% Similarity=0.325 Sum_probs=136.7
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++++...+ .||..|+++|.++++.++.+ .|++++||||||||++|++++++.+.... .+.++||++|+
T Consensus 37 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~-~~~li~apTGsGKT~~~~l~~l~~l~~~~--------~~~~~lil~Pt 107 (237)
T 3bor_A 37 LKESLLRGIYAYGFEKPSAIQQRAIIPCIKG-YDVIAQAQSGTGKTATFAISILQQLEIEF--------KETQALVLAPT 107 (237)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEECCCSSHHHHHHHHHHHHHHCCTTS--------CSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCcHHHHHHHHHHHHHHhcC--------CCceEEEEECc
Confidence 567777666 68999999999999999877 45999999999999999999999875321 34589999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh----hccccEEEcchhHH-HHHHhccCCCccccccceEEeecccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
++|+.|+++.+++++...++.+..++|+....... ...++|+|+||+++ +.+.+.. ..+..+++||+||||.
T Consensus 108 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~---~~~~~~~~lViDEah~ 184 (237)
T 3bor_A 108 RELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRY---LSPKWIKMFVLDEADE 184 (237)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTS---SCSTTCCEEEEESHHH
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCC---cCcccCcEEEECCchH
Confidence 99999999999998877788999999887654332 12389999999997 5554433 3467799999999998
Q ss_pred ccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhc
Q 000114 635 LHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682 (2158)
Q Consensus 635 l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~ 682 (2158)
+.+ .++..+..++.+ .+...|++++|||+|+ ++..++..
T Consensus 185 ~~~~~~~~~l~~i~~~-------~~~~~~~i~~SAT~~~--~~~~~~~~ 224 (237)
T 3bor_A 185 MLSRGFKDQIYEIFQK-------LNTSIQVVLLSATMPT--DVLEVTKK 224 (237)
T ss_dssp HHHTTCHHHHHHHHHH-------SCTTCEEEEECSSCCH--HHHHHHHH
T ss_pred hhccCcHHHHHHHHHh-------CCCCCeEEEEEEecCH--HHHHHHHH
Confidence 876 566666555433 3568899999999983 45454443
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=231.26 Aligned_cols=185 Identities=21% Similarity=0.272 Sum_probs=141.9
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
.+.....+.+.. ||..|+|+|.++++.++++ .+++++||||||||++|++|++..+.....+ ++++|++|+++|+.
T Consensus 49 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~-~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~--~~~lil~Ptr~L~~ 125 (249)
T 3ber_A 49 GVTDVLCEACDQLGWTKPTKIQIEAIPLALQG-RDIIGLAETGSGKTGAFALPILNALLETPQR--LFALVLTPTRELAF 125 (249)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHHSCCS--SCEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC-CCEEEEcCCCCCchhHhHHHHHHHHhcCCCC--ceEEEEeCCHHHHH
Confidence 355555666655 7999999999999999985 5599999999999999999999988773223 38999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCC
Q 000114 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g 1481 (2158)
|+++.+++ +....++++..+.|+..... .....++|+|+||+++..++++.. ...+++++++|+||||++.+..
T Consensus 126 q~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~-~~~l~~~~~lViDEah~l~~~~- 202 (249)
T 3ber_A 126 QISEQFEA-LGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTK-GFNLRALKYLVMDEADRILNMD- 202 (249)
T ss_dssp HHHHHHHH-HHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHST-TCCCTTCCEEEECSHHHHHHTT-
T ss_pred HHHHHHHH-HhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC-CcCccccCEEEEcChhhhhccC-
Confidence 99999984 54445788999999876432 233567999999999988776532 2347889999999999887643
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHh
Q 000114 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWI 1521 (2158)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl 1521 (2158)
+...+..+...++.+.+++++|||+++ ..+++.++
T Consensus 203 -----~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~ 238 (249)
T 3ber_A 203 -----FETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAA 238 (249)
T ss_dssp -----CHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHH
T ss_pred -----hHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 222334444555678999999999986 34444443
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.5e-20 Score=234.99 Aligned_cols=347 Identities=16% Similarity=0.148 Sum_probs=221.6
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.+.++|-..--.+.. +. |..+.||+|||++|.+|++-.... +. .+.+++|+..||.+-++.+. .+...+|+
T Consensus 75 r~~dvQligg~~L~~-G~--iaEM~TGEGKTLva~lp~~lnAL~---G~--~vhVvT~ndyLA~rdae~m~-~l~~~Lgl 145 (822)
T 3jux_A 75 RPFDVQVMGGIALHE-GK--VAEMKTGEGKTLAATMPIYLNALI---GK--GVHLVTVNDYLARRDALWMG-PVYLFLGL 145 (822)
T ss_dssp CCCHHHHHHHHHHHT-TC--EEECCTTSCHHHHTHHHHHHHHTT---SS--CEEEEESSHHHHHHHHHHHH-HHHHHTTC
T ss_pred CCcHHHHHHHHHHhC-CC--hhhccCCCCccHHHHHHHHHHHhc---CC--ceEEEeccHHHHHhHHHHHH-HHHHHhCC
Confidence 466677666655544 33 889999999999999998744333 33 68899999999999988777 45556799
Q ss_pred EEEEEcCC--------------------------------------------------cch-hhhcccCCcEEEeCHHHH
Q 000114 1421 RVVELTGE--------------------------------------------------TAM-DLKLLEKGQIIISTPEKW 1449 (2158)
Q Consensus 1421 ~v~~ltG~--------------------------------------------------~~~-~~~~l~~~~IIV~TPe~l 1449 (2158)
+|+.++++ .+. ..+..-.+||+++|..-+
T Consensus 146 svg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~Ef 225 (822)
T 3jux_A 146 RVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNEF 225 (822)
T ss_dssp CEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHHHH
T ss_pred EEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCcch
Confidence 99988872 111 122334569999999877
Q ss_pred H-HHHhhh----hccccccceeEEEeccccccc-CC-C------CCh--HHHHHHHHHHHHhhcC---------------
Q 000114 1450 D-ALSRRW----KQRKYVQQVSLFIIDELHLIG-GQ-G------GPV--LEVIVSRMRYIASQVE--------------- 1499 (2158)
Q Consensus 1450 ~-~l~r~~----~~~~~l~~v~llIiDEaH~l~-~~-~------g~~--~e~~isrl~~i~~~~~--------------- 1499 (2158)
- +.+|-. ......+...+.||||+|.++ ++ + |+. -.....++..+...+.
T Consensus 226 gFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~v~ 305 (822)
T 3jux_A 226 GFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKARTII 305 (822)
T ss_dssp HHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSCEE
T ss_pred hhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCeEE
Confidence 3 344431 112234668999999999553 11 1 210 0011111111111000
Q ss_pred -----------------------------------------C--------------------------------------
Q 000114 1500 -----------------------------------------N-------------------------------------- 1500 (2158)
Q Consensus 1500 -----------------------------------------~-------------------------------------- 1500 (2158)
.
T Consensus 306 lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaK 385 (822)
T 3jux_A 306 LTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEAK 385 (822)
T ss_dssp ECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHHHH
T ss_pred ECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHHHH
Confidence 0
Q ss_pred -----------------------CceEEEeccCCCC-hHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHH
Q 000114 1501 -----------------------KIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARM 1556 (2158)
Q Consensus 1501 -----------------------~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~ 1556 (2158)
-.++.|||+|+.. ..++.+..+.. ++.. |..+|..-... ...-........
T Consensus 386 Egv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~---vv~I-Ptnkp~~R~d~-~d~vy~t~~eK~ 460 (822)
T 3jux_A 386 EGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME---VVVI-PTHKPMIRKDH-DDLVFRTQKEKY 460 (822)
T ss_dssp HSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC---EEEC-CCSSCCCCEEC-CCEEESSHHHHH
T ss_pred cCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe---EEEE-CCCCCcceeec-CcEEEecHHHHH
Confidence 2358889999866 34455555433 3333 44444322211 000001111111
Q ss_pred HhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccE
Q 000114 1557 QAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGV 1636 (2158)
Q Consensus 1557 ~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv 1636 (2158)
. .....+......+.|+||||+|++.|+.++..|.. .+..+
T Consensus 461 ~----al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~-----------------------------------~Gi~~ 501 (822)
T 3jux_A 461 E----KIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKK-----------------------------------KGIPH 501 (822)
T ss_dssp H----HHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHT-----------------------------------TTCCC
T ss_pred H----HHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHH-----------------------------------CCCCE
Confidence 1 22233333324688999999999999999976632 23447
Q ss_pred EEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCC--------ccEEEEecceeecCCCCcCcCCCHHHHHHhhc
Q 000114 1637 GYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLT--------AHLVVVMGTQYYDGQENAHTDYPVTDLLQMMG 1708 (2158)
Q Consensus 1637 ~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp--------~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~G 1708 (2158)
..+||+....+|..+.+.|+.| .|+|||++++||+|++ +..+|| ++..|-+...|.||+|
T Consensus 502 ~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVI----------nte~Pes~r~y~qriG 569 (822)
T 3jux_A 502 QVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCII----------GTERHESRRIDNQLRG 569 (822)
T ss_dssp EEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEE----------ESSCCSSHHHHHHHHT
T ss_pred EEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEE----------ecCCCCCHHHHHHhhC
Confidence 7899998777777777777766 6999999999999998 556888 6778889999999999
Q ss_pred cCCCCCCCCceEEEEEecCChH-------HHHHHHh-----hCCCccccchhhHHHHH
Q 000114 1709 HASRPLLDNSGKCVILCHAPRK-------EYYKKFL-----YDAFPVESHLHHFLHDN 1754 (2158)
Q Consensus 1709 RaGR~g~d~~G~~iil~~~~~~-------~~~~k~l-----~~~~piES~L~~~l~d~ 1754 (2158)
|+||.| ..|.++.++...+. +.+++++ .+..|+++.+.....+.
T Consensus 570 RTGRqG--~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~~~~~~i~~~~v~~~ie~ 625 (822)
T 3jux_A 570 RAGRQG--DPGESIFFLSLEDDLLRIFGSEQIGKVMNILKIEEGQPIQHPMLSKLIEN 625 (822)
T ss_dssp TSSCSS--CCCEEEEEEETTSHHHHHTTHHHHHHHHHHSSCCSSSCBCCHHHHHHHHH
T ss_pred ccccCC--CCeeEEEEechhHHHHHhhhHHHHHHHHHHcCCCCCceeccHHHHHHHHH
Confidence 999998 78998888876652 2222322 35778999886554433
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-21 Score=226.34 Aligned_cols=181 Identities=21% Similarity=0.344 Sum_probs=134.0
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
|.....+.+.. ||..|+|+|.++++.++.+ .|++++||||||||++|.+|+++.+.....+ .+++|++|+++|+.|
T Consensus 37 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~-~~~li~apTGsGKT~~~~l~~l~~l~~~~~~--~~~lil~Pt~~L~~q 113 (237)
T 3bor_A 37 LKESLLRGIYAYGFEKPSAIQQRAIIPCIKG-YDVIAQAQSGTGKTATFAISILQQLEIEFKE--TQALVLAPTRELAQQ 113 (237)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTT-CCEEECCCSSHHHHHHHHHHHHHHCCTTSCS--CCEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCcHHHHHHHHHHHHHHhcCCC--ceEEEEECcHHHHHH
Confidence 55566666665 7999999999999999975 5599999999999999999999887653233 389999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcchhh--hcc-cC-CcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCC
Q 000114 1406 RYRDWEIKFGQGLGMRVVELTGETAMDL--KLL-EK-GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2158)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~ltG~~~~~~--~~l-~~-~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g 1481 (2158)
+++.++ .++...+.++..+.|+..... ..+ .. ++|+|+||+++..++.+ ....+.+++++|+||||++.+.+
T Consensus 114 ~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~--~~~~~~~~~~lViDEah~~~~~~- 189 (237)
T 3bor_A 114 IQKVIL-ALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR--RYLSPKWIKMFVLDEADEMLSRG- 189 (237)
T ss_dssp HHHHHH-HHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHT--TSSCSTTCCEEEEESHHHHHHTT-
T ss_pred HHHHHH-HHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh--CCcCcccCcEEEECCchHhhccC-
Confidence 999998 565555788888888765432 222 22 69999999998877754 23457889999999999887543
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHH
Q 000114 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGE 1519 (2158)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~ 1519 (2158)
+...+..+...++.+.|++++|||+++ ..+++.
T Consensus 190 -----~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 223 (237)
T 3bor_A 190 -----FKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTK 223 (237)
T ss_dssp -----CHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHH
T ss_pred -----cHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHH
Confidence 122233344445678999999999976 334443
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.9e-21 Score=222.45 Aligned_cols=184 Identities=21% Similarity=0.297 Sum_probs=142.3
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
.|++...+.+.. ||..|+|+|.++++.++++ .+++++||||||||++|+++++..+... .++++++|++|+++|+.
T Consensus 20 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~li~~~TGsGKT~~~~~~~~~~~~~~--~~~~~~lil~Pt~~L~~ 96 (220)
T 1t6n_A 20 LLKPELLRAIVDCGFEHPSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVLATLQQLEPV--TGQVSVLVMCHTRELAF 96 (220)
T ss_dssp CCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHCCCC--TTCCCEEEECSCHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCchhhhhhHHHHHhhhcc--CCCEEEEEEeCCHHHHH
Confidence 355666777765 7999999999999999985 5599999999999999999999887652 22348999999999999
Q ss_pred HHHHHHHHHhcCC-CCcEEEEEcCCcchh--hhccc--CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC
Q 000114 1405 ERYRDWEIKFGQG-LGMRVVELTGETAMD--LKLLE--KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2158)
Q Consensus 1405 q~~~~~~~~f~~~-~g~~v~~ltG~~~~~--~~~l~--~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~ 1479 (2158)
|+++.+++ +... .++++..++|+.... .+.+. .++|+|+||+++..++++. ...+++++++|+||||++.++
T Consensus 97 q~~~~~~~-~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--~~~~~~~~~lViDEah~~~~~ 173 (220)
T 1t6n_A 97 QISKEYER-FSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK--SLNLKHIKHFILDECDKMLEQ 173 (220)
T ss_dssp HHHHHHHH-HTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT--SSCCTTCCEEEEESHHHHHSS
T ss_pred HHHHHHHH-HHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhC--CCCcccCCEEEEcCHHHHhcc
Confidence 99999984 5443 378999999987643 22222 3599999999998887763 345789999999999998754
Q ss_pred CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHH
Q 000114 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEW 1520 (2158)
Q Consensus 1480 ~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~w 1520 (2158)
.+ +...+..+....+.+.|++++|||+++ .+++++.
T Consensus 174 ~~-----~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 210 (220)
T 1t6n_A 174 LD-----MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRK 210 (220)
T ss_dssp HH-----HHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHT
T ss_pred cC-----cHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHH
Confidence 22 334445555556778999999999987 3455543
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.86 E-value=9.4e-21 Score=225.75 Aligned_cols=174 Identities=17% Similarity=0.287 Sum_probs=131.6
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc-------CCCceEEEEEcccHHHHHHHHHHH
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-------ETGVMRAVYIAPLEALAKERYRDW 1410 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~-------~~~~~~~v~IaP~raLa~q~~~~~ 1410 (2158)
||..|+|+|.++++.++.+ .+++++||||||||++|++|++..+.... ...++++||++|+++|+.|+++.+
T Consensus 42 g~~~~~~~Q~~~i~~i~~~-~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (253)
T 1wrb_A 42 SYQRPTPIQKNAIPAILEH-RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120 (253)
T ss_dssp TCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHhCC-CCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHH
Confidence 6999999999999999885 55999999999999999999999886532 112248999999999999999999
Q ss_pred HHHhcCCCCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCC-CChHHH
Q 000114 1411 EIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEV 1486 (2158)
Q Consensus 1411 ~~~f~~~~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~-g~~~e~ 1486 (2158)
+ .+....++++..++|+..... .....++|+|+||+++..++++. ...+++++++|+||||++.+.+ +..++.
T Consensus 121 ~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~--~~~~~~~~~lViDEah~~~~~~~~~~~~~ 197 (253)
T 1wrb_A 121 Q-KFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN--KISLEFCKYIVLDEADRMLDMGFEPQIRK 197 (253)
T ss_dssp H-HHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT--SBCCTTCCEEEEETHHHHHHTTCHHHHHH
T ss_pred H-HHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC--CCChhhCCEEEEeCHHHHHhCchHHHHHH
Confidence 8 455555788888888876442 22345699999999998887763 3457889999999999987653 333333
Q ss_pred HHHHHHHHHhhcCC--CceEEEeccCCCC-hHHHHHH
Q 000114 1487 IVSRMRYIASQVEN--KIRIVALSTSLAN-AKDLGEW 1520 (2158)
Q Consensus 1487 ~isrl~~i~~~~~~--~~riV~lSATl~n-~~dl~~w 1520 (2158)
++.++ ..+. +.|++++|||+++ ..+++..
T Consensus 198 i~~~~-----~~~~~~~~q~l~~SAT~~~~~~~~~~~ 229 (253)
T 1wrb_A 198 IIEES-----NMPSGINRQTLMFSATFPKEIQKLAAD 229 (253)
T ss_dssp HHHSS-----CCCCGGGCEEEEEESSCCHHHHHHHHH
T ss_pred HHhhc-----cCCCCCCcEEEEEEEeCCHHHHHHHHH
Confidence 22211 1222 6899999999976 3444443
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-21 Score=220.74 Aligned_cols=174 Identities=22% Similarity=0.279 Sum_probs=136.4
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
+++.+...+ .|+..|+++|.++++.++.+ .+++++||||+|||++|++++++.+..... ...+.+++|++|+
T Consensus 8 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~li~~~TGsGKT~~~~~~~~~~l~~~~~-----~~~~~~~lil~P~ 81 (207)
T 2gxq_A 8 LKPEILEALHGRGLTTPTPIQAAALPLALEG-KDLIGQARTGTGKTLAFALPIAERLAPSQE-----RGRKPRALVLTPT 81 (207)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHCCCCCC-----TTCCCSEEEECSS
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHcCC-CCEEEECCCCChHHHHHHHHHHHHHhhccc-----cCCCCcEEEEECC
Confidence 566777666 68999999999999998887 459999999999999999999998754221 1235689999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
++|+.|+++.+.+.+.. +++..++|+....... ..+++|+|+||+++..+.+... ..+.++++||+||||.+.
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGV--LDLSRVEVAVLDEADEML 157 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTS--SCCTTCSEEEEESHHHHH
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCC--cchhhceEEEEEChhHhh
Confidence 99999999999997654 6788888887654322 3578999999999844443322 356789999999999887
Q ss_pred c-CChhhHHHHHHHHHHHHhhccccccEEEEccccCC
Q 000114 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN 672 (2158)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn 672 (2158)
+ .++..++.++. ..+...|++++|||+|+
T Consensus 158 ~~~~~~~~~~i~~-------~~~~~~~~i~~SAT~~~ 187 (207)
T 2gxq_A 158 SMGFEEEVEALLS-------ATPPSRQTLLFSATLPS 187 (207)
T ss_dssp HTTCHHHHHHHHH-------TSCTTSEEEEECSSCCH
T ss_pred ccchHHHHHHHHH-------hCCccCeEEEEEEecCH
Confidence 6 56666665543 23567899999999984
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.8e-20 Score=245.60 Aligned_cols=329 Identities=16% Similarity=0.181 Sum_probs=206.4
Q ss_pred CCCHHHHHHHHHHH--------cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000114 495 QLNRVQSRVYKSAL--------SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l--------~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~ 566 (2158)
.|+|+|.+++..++ .+..+.|++.+||+|||++++..+...+...... .....++|+|+|+ +|+.|+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~----~p~~~~~LiV~P~-sll~qW 129 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDC----KPEIDKVIVVSPS-SLVRNW 129 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTS----SCSCSCEEEEECH-HHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccc----cCCCCcEEEEecH-HHHHHH
Confidence 68999999999875 3445799999999999999988877766543211 1123469999997 899999
Q ss_pred HHHHHhhcccCCcEEEEEeCCCccCH-hhh----------ccccEEEcchhHHHHHHhccCCCccccccceEEeeccccc
Q 000114 567 VGNLSNRLQMYDVKVRELSGDQTLTR-QQI----------EETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 567 ~~~~~~~~~~~gi~v~~l~Gd~~~~~-~~~----------~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
.+++.+.+.. .+.+..+.|+..... ... ..++|+|+|++.+..... ......+++||+||+|.+
T Consensus 130 ~~E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~----~l~~~~~~~vI~DEaH~i 204 (644)
T 1z3i_X 130 YNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE----VLHKGKVGLVICDEGHRL 204 (644)
T ss_dssp HHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT----TTTTSCCCEEEETTGGGC
T ss_pred HHHHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH----HhhcCCccEEEEECceec
Confidence 9999987764 455666666543211 110 147899999997532211 122345789999999998
Q ss_pred ccCChhhHHHHHHHHHHHHhhccccccEEEEccccC-C-hHHH---HHHHhccc--------------------------
Q 000114 636 HDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP-N-YEDV---ALFLRVNL-------------------------- 684 (2158)
Q Consensus 636 ~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlp-n-~~dv---~~~l~~~~-------------------------- 684 (2158)
.......... +.. . ...+.++||||+- | ..++ -.|+....
T Consensus 205 kn~~~~~~~a-l~~-------l-~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~ 275 (644)
T 1z3i_X 205 KNSDNQTYLA-LNS-------M-NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDK 275 (644)
T ss_dssp CTTCHHHHHH-HHH-------H-CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSH
T ss_pred CChhhHHHHH-HHh-------c-ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHH
Confidence 6533222221 111 1 2346799999952 1 1111 11111000
Q ss_pred ---------------cCceEEecC-----CcccccceeEEEeeccCChh---------------------------HHHH
Q 000114 685 ---------------EKGLFYFDN-----SYRPVPLSQQYIGIQVKKPL---------------------------QRFQ 717 (2158)
Q Consensus 685 ---------------~~~~~~f~~-----~~rpv~l~~~~~~~~~~~~~---------------------------~~~~ 717 (2158)
-.+.+.... ..-|.... ..+.+...... ..+.
T Consensus 276 ~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~-~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~ 354 (644)
T 1z3i_X 276 DRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIE-QVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSIT 354 (644)
T ss_dssp HHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEE-EEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceE-EEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHH
Confidence 000000000 00111111 11111100000 0000
Q ss_pred HhhH-------------------------------------------HHHHHHHHH---hCCCeEEEEecChHHHHHHHH
Q 000114 718 LMND-------------------------------------------LCYEKVVAV---AGKHQVLIFVHSRKETAKTAR 751 (2158)
Q Consensus 718 ~l~~-------------------------------------------~~~~~i~~~---~~~~~vLVFv~sr~~~~~~a~ 751 (2158)
.+.. .+...++.. ..+.++|||++.+..+..++.
T Consensus 355 ~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~ 434 (644)
T 1z3i_X 355 SLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEK 434 (644)
T ss_dssp HHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHH
Confidence 0000 011112221 236799999999999988888
Q ss_pred HHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCce---EEEech
Q 000114 752 AIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQ---VLVSTA 828 (2158)
Q Consensus 752 ~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~---VLVaT~ 828 (2158)
.|...++ .+..+||+|+..+|..+++.|++|... +|+||.
T Consensus 435 ~l~~~g~-------------------------------------~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 477 (644)
T 1z3i_X 435 LCRNRRY-------------------------------------LYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 477 (644)
T ss_dssp HHHHHTC-------------------------------------CEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred HHHHCCC-------------------------------------CEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc
Confidence 8776542 355679999999999999999998764 899999
Q ss_pred hhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCc
Q 000114 829 TLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2158)
Q Consensus 829 tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (2158)
+++.|+|++++++||+ ||++- ++..+.|++||++|.|..+...++.++....
T Consensus 478 a~g~Glnl~~a~~Vi~----~d~~w------np~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~t 529 (644)
T 1z3i_X 478 AGGCGLNLIGANRLVM----FDPDW------NPANDEQAMARVWRDGQKKTCYIYRLLSTGT 529 (644)
T ss_dssp GSCTTCCCTTEEEEEE----CSCCS------SHHHHHHHHTTSSSTTCCSCEEEEEEEETTS
T ss_pred cccCCcccccCCEEEE----ECCCC------CccHHHHHHHhhhhcCCCCceEEEEEEECCC
Confidence 9999999999999999 55543 6678999999999999776666776666654
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.6e-21 Score=224.03 Aligned_cols=186 Identities=20% Similarity=0.277 Sum_probs=141.0
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc--CCCceEEEEEcccHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS--ETGVMRAVYIAPLEALA 1403 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~--~~~~~~~v~IaP~raLa 1403 (2158)
+.....+.+.. ||..|+|+|.++++.++++ ++++++||||||||++|++|++..+.... ...+++++|++|+++|+
T Consensus 32 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~ 110 (236)
T 2pl3_A 32 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQG-KDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELA 110 (236)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHH
Confidence 55556666655 7999999999999999875 55999999999999999999998876521 11234899999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcCCcchh--hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCC
Q 000114 1404 KERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2158)
Q Consensus 1404 ~q~~~~~~~~f~~~~g~~v~~ltG~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g 1481 (2158)
.|+++.++ .++...++++..++|+.... ...+..++|+|+||+++...+.+. ....+.+++++|+||||++.+..
T Consensus 111 ~q~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah~~~~~~- 187 (236)
T 2pl3_A 111 YQTFEVLR-KVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDET-VSFHATDLQMLVLDEADRILDMG- 187 (236)
T ss_dssp HHHHHHHH-HHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHC-SSCCCTTCCEEEETTHHHHHHTT-
T ss_pred HHHHHHHH-HHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhc-CCcccccccEEEEeChHHHhcCC-
Confidence 99999998 55555578899999986543 344567899999999998776542 12356789999999999887543
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHh
Q 000114 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWI 1521 (2158)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl 1521 (2158)
+...+..+...++.+.|++++|||+++ ..+++...
T Consensus 188 -----~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~ 223 (236)
T 2pl3_A 188 -----FADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLS 223 (236)
T ss_dssp -----THHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHS
T ss_pred -----cHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHh
Confidence 223344455556778999999999976 34555443
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-21 Score=223.67 Aligned_cols=175 Identities=22% Similarity=0.271 Sum_probs=135.0
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++.+.+.+ .||..|+++|.++++.++.+ .+++++||||+|||++|+++++..+.... .+.++||++|+
T Consensus 21 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~-~~~li~~~TGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~Pt 91 (220)
T 1t6n_A 21 LKPELLRAIVDCGFEHPSEVQHECIPQAILG-MDVLCQAKSGMGKTAVFVLATLQQLEPVT--------GQVSVLVMCHT 91 (220)
T ss_dssp CCHHHHHHHHHTTCCCCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHCCCCT--------TCCCEEEECSC
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCC-CCEEEECCCCCchhhhhhHHHHHhhhccC--------CCEEEEEEeCC
Confidence 556666666 68999999999999999887 45999999999999999999998864321 24589999999
Q ss_pred HHHHHHHHHHHHhhcccC-CcEEEEEeCCCccCHhh----hccccEEEcchhHHHHHHhccCCCccccccceEEeecccc
Q 000114 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
++|+.|+++.+.++.... ++++..++|+....... ...++|+|+||+++..+.+... ..+.++++||+||||+
T Consensus 92 ~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~lViDEah~ 169 (220)
T 1t6n_A 92 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS--LNLKHIKHFILDECDK 169 (220)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS--SCCTTCCEEEEESHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCC--CCcccCCEEEEcCHHH
Confidence 999999999999887665 78999999987654432 1346999999999855554432 4578899999999999
Q ss_pred cccCChhhHHHHHHHHHHHHhhccccccEEEEccccCC
Q 000114 635 LHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN 672 (2158)
Q Consensus 635 l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn 672 (2158)
+.+..+ +...+.++ ....+...|++++|||+++
T Consensus 170 ~~~~~~--~~~~~~~i---~~~~~~~~~~i~~SAT~~~ 202 (220)
T 1t6n_A 170 MLEQLD--MRRDVQEI---FRMTPHEKQVMMFSATLSK 202 (220)
T ss_dssp HHSSHH--HHHHHHHH---HHTSCSSSEEEEEESCCCT
T ss_pred HhcccC--cHHHHHHH---HHhCCCcCeEEEEEeecCH
Confidence 875322 22222222 2234568899999999985
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-19 Score=249.26 Aligned_cols=327 Identities=17% Similarity=0.191 Sum_probs=208.6
Q ss_pred CCCCHHHHHHHHHHH---cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 494 TQLNRVQSRVYKSAL---SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l---~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.+|+|+|.+++..++ ..+.+.|++.+||+|||++++..+...+..... ...+|||+| .+|+.|+.++|
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~--------~~~~LIV~P-~sll~qW~~E~ 305 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQ--------NGPHIIVVP-LSTMPAWLDTF 305 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSC--------CSCEEEECC-TTTHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCC--------CCCEEEEEC-chHHHHHHHHH
Confidence 379999999998654 355679999999999999987777655543321 236899999 78999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHh---------------hhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccc
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQ---------------QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~---------------~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
.+.+. ++++..++|+...... .....+|+|+|++.+..-... .....+++|||||||.+
T Consensus 306 ~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~----l~~~~w~~vIvDEaH~l 379 (800)
T 3mwy_W 306 EKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE----LGSIKWQFMAVDEAHRL 379 (800)
T ss_dssp HHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH----HHTSEEEEEEETTGGGG
T ss_pred HHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH----HhcCCcceeehhhhhhh
Confidence 98764 5678888886543221 123578999999976221111 11124689999999998
Q ss_pred ccCChhhHHHHHHHHHHHHhhccccccEEEEccccC--ChHHHHHHHhccccCc-----eEEecCC--------------
Q 000114 636 HDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP--NYEDVALFLRVNLEKG-----LFYFDNS-------------- 694 (2158)
Q Consensus 636 ~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlp--n~~dv~~~l~~~~~~~-----~~~f~~~-------------- 694 (2158)
......... . +... ...+.++||||+- +..++...+..-.+.. .+.+...
T Consensus 380 kn~~s~~~~-~-------l~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 450 (800)
T 3mwy_W 380 KNAESSLYE-S-------LNSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRR 450 (800)
T ss_dssp CCSSSHHHH-H-------HTTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHT
T ss_pred cCchhHHHH-H-------HHHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHH
Confidence 643221111 1 1222 3345688999952 3444444333210000 0000000
Q ss_pred ccc-------------ccc-eeEEEeeccCChhHH---------------------------HHHhhH------------
Q 000114 695 YRP-------------VPL-SQQYIGIQVKKPLQR---------------------------FQLMND------------ 721 (2158)
Q Consensus 695 ~rp-------------v~l-~~~~~~~~~~~~~~~---------------------------~~~l~~------------ 721 (2158)
.+| .|- ....+.+........ +..+..
T Consensus 451 l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~ 530 (800)
T 3mwy_W 451 IQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAE 530 (800)
T ss_dssp TGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHH
T ss_pred HhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchH
Confidence 000 111 111111111100000 000000
Q ss_pred ----------------------------HHHHHHHHHh--CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCc
Q 000114 722 ----------------------------LCYEKVVAVA--GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDS 771 (2158)
Q Consensus 722 ----------------------------~~~~~i~~~~--~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~ 771 (2158)
.....++... .++++||||..+..+..++..|...++
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~------------- 597 (800)
T 3mwy_W 531 ERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGI------------- 597 (800)
T ss_dssp HHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTC-------------
T ss_pred HHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCC-------------
Confidence 0011122221 367999999999999888888876543
Q ss_pred hhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCc---eEEEechhhhhccCCCceEEEEecccc
Q 000114 772 VSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHV---QVLVSTATLAWGVNLPAHTVIIKGTQI 848 (2158)
Q Consensus 772 ~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i---~VLVaT~tla~GVdlP~v~vVI~~~~~ 848 (2158)
.+..+||+++..+|..+++.|++|.. .+|+||.+++.|+|+|++++||.++.+
T Consensus 598 ------------------------~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~ 653 (800)
T 3mwy_W 598 ------------------------NFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSD 653 (800)
T ss_dssp ------------------------CCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCC
T ss_pred ------------------------CEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCC
Confidence 34567999999999999999998655 499999999999999999999995555
Q ss_pred cCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcH
Q 000114 849 YNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2158)
Q Consensus 849 yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~ 891 (2158)
+ ++..+.|++||++|.|..+...++.++.....
T Consensus 654 w----------np~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~Ti 686 (800)
T 3mwy_W 654 W----------NPQADLQAMARAHRIGQKNHVMVYRLVSKDTV 686 (800)
T ss_dssp S----------CSHHHHHHHTTTSCSSCCSCEEEEEEEETTSH
T ss_pred C----------ChhhHHHHHHHHHhcCCCceEEEEEEecCCCH
Confidence 4 45579999999999998777777777777644
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-19 Score=241.27 Aligned_cols=118 Identities=18% Similarity=0.227 Sum_probs=99.8
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHH
Q 000114 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2158)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~ 811 (2158)
.+.++||||+|++.++.++..|.+.+. .+.++||+|++.+|..
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi-------------------------------------~~~~lh~~~~~~~R~~ 480 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGI-------------------------------------RARYLHHELDAFKRQA 480 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTC-------------------------------------CEEEECTTCCHHHHHH
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCC-------------------------------------CceeecCCCCHHHHHH
Confidence 477999999999999999999987542 3567799999999999
Q ss_pred HHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcH
Q 000114 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2158)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~ 891 (2158)
+++.|++|.++|||||+++++|+|+|++++||+ |+.+..++ +.|..+|+||+|||||.+ .|.++++++..+.
T Consensus 481 ~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~----~d~d~~G~-p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~~ 552 (664)
T 1c4o_A 481 LIRDLRLGHYDCLVGINLLREGLDIPEVSLVAI----LDADKEGF-LRSERSLIQTIGRAARNA---RGEVWLYADRVSE 552 (664)
T ss_dssp HHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEE----TTTTSCSG-GGSHHHHHHHHGGGTTST---TCEEEEECSSCCH
T ss_pred HHHHhhcCCceEEEccChhhcCccCCCCCEEEE----eCCcccCC-CCCHHHHHHHHCccCcCC---CCEEEEEEcCCCH
Confidence 999999999999999999999999999999998 55432111 238889999999999974 6999999988765
Q ss_pred HHH
Q 000114 892 RYY 894 (2158)
Q Consensus 892 ~~y 894 (2158)
...
T Consensus 553 ~~~ 555 (664)
T 1c4o_A 553 AMQ 555 (664)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=215.46 Aligned_cols=184 Identities=22% Similarity=0.278 Sum_probs=138.4
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc-CCCceEEEEEcccHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~-~~~~~~~v~IaP~raLa~ 1404 (2158)
+.....+.+.. ||..|+|+|.++++.++++ .+++++||||||||++|.++++..+.... ...+++++|++|+++|+.
T Consensus 8 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~-~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~ 86 (207)
T 2gxq_A 8 LKPEILEALHGRGLTTPTPIQAAALPLALEG-KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELAL 86 (207)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTT-CCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHcCC-CCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHH
Confidence 44455556555 7999999999999999885 55999999999999999999998876421 122348999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcchh---hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCC
Q 000114 1405 ERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~ltG~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g 1481 (2158)
|+++.+++.+. +.++..++|+.... ......++|+|+||+++..++++ ....+++++++|+||||++.+..
T Consensus 87 q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~~- 160 (207)
T 2gxq_A 87 QVASELTAVAP---HLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--GVLDLSRVEVAVLDEADEMLSMG- 160 (207)
T ss_dssp HHHHHHHHHCT---TSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH--TSSCCTTCSEEEEESHHHHHHTT-
T ss_pred HHHHHHHHHhh---cceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc--CCcchhhceEEEEEChhHhhccc-
Confidence 99999995443 36778888876543 22334679999999999887765 34457889999999999887543
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhc
Q 000114 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIG 1522 (2158)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~ 1522 (2158)
+...+..+....+.+.|++++|||+++ .+++.+++.
T Consensus 161 -----~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 197 (207)
T 2gxq_A 161 -----FEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYM 197 (207)
T ss_dssp -----CHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHC
T ss_pred -----hHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHc
Confidence 122233344455678999999999987 455655543
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-19 Score=246.76 Aligned_cols=325 Identities=14% Similarity=0.141 Sum_probs=207.2
Q ss_pred CCCCHHHHHHHHHHh---cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000114 1340 KHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~---~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~ 1416 (2158)
..++|+|.+++..++ ..+.+.|++.+||+|||+.+...+...+......+ .+|||+| .+|+.|+.+++.+ +..
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~--~~LIV~P-~sll~qW~~E~~~-~~p 310 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNG--PHIIVVP-LSTMPAWLDTFEK-WAP 310 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCS--CEEEECC-TTTHHHHHHHHHH-HST
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCC--CEEEEEC-chHHHHHHHHHHH-HCC
Confidence 479999999998654 45678999999999999998666655544433344 7899999 7889999999884 432
Q ss_pred CCCcEEEEEcCCcchhh---------------hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCC
Q 000114 1417 GLGMRVVELTGETAMDL---------------KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2158)
Q Consensus 1417 ~~g~~v~~ltG~~~~~~---------------~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g 1481 (2158)
+.++..++|+..... ......+|+|+|++.+....... .-..+++|||||||++.+...
T Consensus 311 --~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l----~~~~w~~vIvDEaH~lkn~~s 384 (800)
T 3mwy_W 311 --DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAEL----GSIKWQFMAVDEAHRLKNAES 384 (800)
T ss_dssp --TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHH----HTSEEEEEEETTGGGGCCSSS
T ss_pred --CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHH----hcCCcceeehhhhhhhcCchh
Confidence 578888888754321 12235589999999875432221 123689999999999964332
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEeccCCCC--hHHHH---HHhccCCCc---eEecCCC--------------Ccc--
Q 000114 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN--AKDLG---EWIGATSHG---LFNFPPG--------------VRP-- 1537 (2158)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riV~lSATl~n--~~dl~---~wl~~~~~~---i~~f~~~--------------~rp-- 1537 (2158)
.+ . .....+. ..+.++||||+-. ..++. .|+...... .+.+... .+|
T Consensus 385 -~~---~----~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~ 455 (800)
T 3mwy_W 385 -SL---Y----ESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFI 455 (800)
T ss_dssp -HH---H----HHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGE
T ss_pred -HH---H----HHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHH
Confidence 11 1 1112222 4456889999732 33332 333221100 0000000 000
Q ss_pred -----------cc-cEEEEecccccch-----HHHHH-------------------------------------------
Q 000114 1538 -----------VP-LEIHIQGVDITNF-----EARMQ------------------------------------------- 1557 (2158)
Q Consensus 1538 -----------v~-l~~~i~~~~~~~~-----~~~~~------------------------------------------- 1557 (2158)
.| ....+........ ...+.
T Consensus 456 lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~ 535 (800)
T 3mwy_W 456 LRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQ 535 (800)
T ss_dssp EECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCC
T ss_pred hhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHH
Confidence 00 0111111110000 00000
Q ss_pred ----------------hcChHH---HH-HHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccch
Q 000114 1558 ----------------AMTKPT---FT-AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVE 1617 (2158)
Q Consensus 1558 ----------------~~~k~~---~~-~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~ 1617 (2158)
...... +. .+......+.++||||..+..+..++..|.
T Consensus 536 ~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~---------------------- 593 (800)
T 3mwy_W 536 KFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLS---------------------- 593 (800)
T ss_dssp CC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHH----------------------
T ss_pred hcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHH----------------------
Confidence 000001 11 111222457799999999988877765542
Q ss_pred hhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCc---eEEEecCccccccCCCccEEEEecceeecCCCCc
Q 000114 1618 PFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKI---KVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENA 1694 (2158)
Q Consensus 1618 ~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i---~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~ 1694 (2158)
..+..+..+||+++..+|..+++.|++|.. .+|++|.+++.|+|+++..+|| ++
T Consensus 594 -------------~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI----------~~ 650 (800)
T 3mwy_W 594 -------------IKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVV----------IF 650 (800)
T ss_dssp -------------HHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEE----------ES
T ss_pred -------------hCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEE----------Ee
Confidence 125568899999999999999999998654 4999999999999999888888 45
Q ss_pred CcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC
Q 000114 1695 HTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1695 ~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~ 1728 (2158)
+.+.++..+.|++||++|.|..+...++.++...
T Consensus 651 D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 651 DSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp SCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred cCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 6677899999999999999987788888777665
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-18 Score=234.43 Aligned_cols=327 Identities=15% Similarity=0.161 Sum_probs=204.4
Q ss_pred CCCCHHHHHHHHHHh--------cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCC--CceEEEEEcccHHHHHHHHHH
Q 000114 1340 KHFNPIQTQVFTVLY--------NTDDNVLVAAPTGSGKTICSEFAILRNHQKASET--GVMRAVYIAPLEALAKERYRD 1409 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~--------~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~--~~~~~v~IaP~raLa~q~~~~ 1409 (2158)
..++|+|.+++..++ .++.+.|++.+||+|||+.+...+...+...... ...++|||+|+ +|+.|+.++
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHH
Confidence 379999999999876 3456799999999999999977766655542111 11268999997 899999999
Q ss_pred HHHHhcCCCCcEEEEEcCCcchhh-----hcc------cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC
Q 000114 1410 WEIKFGQGLGMRVVELTGETAMDL-----KLL------EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2158)
Q Consensus 1410 ~~~~f~~~~g~~v~~ltG~~~~~~-----~~l------~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~ 1478 (2158)
+.+.++. .+.+..+.|+..... ..+ ...+|+|+|++.+..... ......+++||+||||++.+
T Consensus 133 ~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~----~l~~~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 133 VGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE----VLHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT----TTTTSCCCEEEETTGGGCCT
T ss_pred HHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH----HhhcCCccEEEEECceecCC
Confidence 9855543 345666666543321 111 136899999998654322 12234688999999999965
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh--H------------------HHHHHhccC------CC------
Q 000114 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANA--K------------------DLGEWIGAT------SH------ 1526 (2158)
Q Consensus 1479 ~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~--~------------------dl~~wl~~~------~~------ 1526 (2158)
.....+ ..+..+ . ..+.++||||+-.- . .+..++... ..
T Consensus 207 ~~~~~~----~al~~l----~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~ 277 (644)
T 1z3i_X 207 SDNQTY----LALNSM----N-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDR 277 (644)
T ss_dssp TCHHHH----HHHHHH----C-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHH
T ss_pred hhhHHH----HHHHhc----c-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHH
Confidence 331111 111222 2 45779999997321 1 111111100 00
Q ss_pred ----------------ceEecC----CCCcccccEEEEecccccc-----hH-------------------HHHH---h-
Q 000114 1527 ----------------GLFNFP----PGVRPVPLEIHIQGVDITN-----FE-------------------ARMQ---A- 1558 (2158)
Q Consensus 1527 ----------------~i~~f~----~~~rpv~l~~~i~~~~~~~-----~~-------------------~~~~---~- 1558 (2158)
.+..-. ...-|...+..+ ...... |. ..+. .
T Consensus 278 ~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v-~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~L 356 (644)
T 1z3i_X 278 AAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVV-CCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSL 356 (644)
T ss_dssp HHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEE-EECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEE-EeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHH
Confidence 000000 000111111111 000000 00 0000 0
Q ss_pred ----------------------------------------cC-h-HHHHHHHHhH--hcCCCEEEEecChHHHHHHHHHH
Q 000114 1559 ----------------------------------------MT-K-PTFTAIVQHA--KNEKPALVFVPSRKYVRLTAVDL 1594 (2158)
Q Consensus 1559 ----------------------------------------~~-k-~~~~~i~~~~--~~~~~~IVFv~sr~~~~~~a~~L 1594 (2158)
.. + .....+.... ..+.++|||+..+..+..++..|
T Consensus 357 rk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l 436 (644)
T 1z3i_X 357 KKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLC 436 (644)
T ss_dssp HHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHH
Confidence 00 0 0111222221 24678999999999887776544
Q ss_pred HhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCce---EEEecCcccc
Q 000114 1595 MTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIK---VCVMSSSMCW 1671 (2158)
Q Consensus 1595 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~---VLVaT~~la~ 1671 (2158)
. ..+..+..+||+++..+|..+++.|++|... +|++|.+++.
T Consensus 437 ~-----------------------------------~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~ 481 (644)
T 1z3i_X 437 R-----------------------------------NRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGC 481 (644)
T ss_dssp H-----------------------------------HHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCT
T ss_pred H-----------------------------------HCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccC
Confidence 1 1345688999999999999999999998764 8999999999
Q ss_pred ccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC
Q 000114 1672 GVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1672 Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~ 1728 (2158)
|+|++++.+|| +++.+.++..+.|++||++|.|..+...++.++...
T Consensus 482 Glnl~~a~~Vi----------~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 482 GLNLIGANRLV----------MFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp TCCCTTEEEEE----------ECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred CcccccCCEEE----------EECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 99999999998 566778999999999999999977777777676665
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.6e-19 Score=236.09 Aligned_cols=211 Identities=16% Similarity=0.173 Sum_probs=140.4
Q ss_pred cceeEEEecccccccCCCCChHHHHHHHHHHHHhh------------------cCCCceEEEeccCCCChHHHHHHhccC
Q 000114 1463 QQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQ------------------VENKIRIVALSTSLANAKDLGEWIGAT 1524 (2158)
Q Consensus 1463 ~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~------------------~~~~~riV~lSATl~n~~dl~~wl~~~ 1524 (2158)
.+-.++|+||+|.+.+..+..++....+....... .+...+++++|||+++.. +.. .
T Consensus 324 ~~~~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~-~~~--~-- 398 (664)
T 1c4o_A 324 PEDFLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFE-LAH--S-- 398 (664)
T ss_dssp CTTCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEEESSCCHHH-HHH--C--
T ss_pred hhccEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEEEecCCCHHH-HHh--h--
Confidence 34568999999987654444455444444332211 113578999999986432 221 0
Q ss_pred CCceEe--cCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCC
Q 000114 1525 SHGLFN--FPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDG 1602 (2158)
Q Consensus 1525 ~~~i~~--f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~ 1602 (2158)
..+.. ..+.....|. +.+..+. ... ......+......+.++||||+|++.|+.++..|..
T Consensus 399 -~~~~~~~~r~~~l~~p~-i~v~~~~-----~~~----~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~------ 461 (664)
T 1c4o_A 399 -GRVVEQIIRPTGLLDPL-VRVKPTE-----NQI----LDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVE------ 461 (664)
T ss_dssp -SEEEEECSCTTCCCCCE-EEEECST-----THH----HHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHH------
T ss_pred -hCeeeeeeccCCCCCCe-EEEeccc-----chH----HHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHh------
Confidence 11111 1121111221 2222221 111 122334444445788999999999999999876632
Q ss_pred cccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEE
Q 000114 1603 DQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVV 1682 (2158)
Q Consensus 1603 ~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI 1682 (2158)
.+..+.++||+|+..+|..+++.|++|.++|||||+++++|+|+|.+.+||
T Consensus 462 -----------------------------~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI 512 (664)
T 1c4o_A 462 -----------------------------HGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVA 512 (664)
T ss_dssp -----------------------------TTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEE
T ss_pred -----------------------------cCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEE
Confidence 234588899999999999999999999999999999999999999988777
Q ss_pred ecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHH
Q 000114 1683 MGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEY 1732 (2158)
Q Consensus 1683 ~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~ 1732 (2158)
.|+.. ....|.+..+|+||+|||||. +.|.|++++.......
T Consensus 513 ----~~d~d-~~G~p~s~~~~iQr~GRagR~---~~G~~i~~~~~~~~~~ 554 (664)
T 1c4o_A 513 ----ILDAD-KEGFLRSERSLIQTIGRAARN---ARGEVWLYADRVSEAM 554 (664)
T ss_dssp ----ETTTT-SCSGGGSHHHHHHHHGGGTTS---TTCEEEEECSSCCHHH
T ss_pred ----EeCCc-ccCCCCCHHHHHHHHCccCcC---CCCEEEEEEcCCCHHH
Confidence 23322 123467899999999999996 4799999998765443
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-17 Score=215.76 Aligned_cols=131 Identities=18% Similarity=0.108 Sum_probs=108.5
Q ss_pred CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.|+ .|+++|..+++.++.|+ |+.|+||+|||++|.+|++..... +..+++++||+.||.|.+..+
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~---IaeakTGeGKTLvf~Lp~~L~aL~-----------G~qv~VvTPTreLA~Qdae~m 140 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK---IAEMKTGEGKTLVATLAVALNALT-----------GKGVHVVTVNDYLARRDAEWM 140 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS---EEECCSTHHHHHHHHHHHHHHHTT-----------CSCCEEEESSHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc---eeeccCCCchHHHHHHHHHHHHHh-----------CCCEEEEeCCHHHHHHHHHHH
Confidence 478 89999999999988875 999999999999999999654432 236999999999999999999
Q ss_pred HhhcccCCcEEEEEeCCCccCHh-hhccccEEEcchhHH--HHHHhcc---CCCcccc---ccceEEeecccccc
Q 000114 571 SNRLQMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKS---GDRTYTQ---LVKLLIIDEIHLLH 636 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPekl--d~l~r~~---~~~~~l~---~v~lIIiDEaH~l~ 636 (2158)
..++..+|++|+.++|+.+...+ ....++|+|+||+.+ |.+..+. .....++ .++++||||+|.++
T Consensus 141 ~~l~~~lGLsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 141 GPVYRGLGLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHHHHTTTCCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHHHHhcCCeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 99999999999999998864432 245789999999996 6666653 1224456 89999999999875
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-17 Score=221.00 Aligned_cols=210 Identities=17% Similarity=0.180 Sum_probs=138.3
Q ss_pred eeEEEecccccccCCCCChHHHHHHHHHHHHhh------------------cCCCceEEEeccCCCChHHHHHHhccCCC
Q 000114 1465 VSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQ------------------VENKIRIVALSTSLANAKDLGEWIGATSH 1526 (2158)
Q Consensus 1465 v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~------------------~~~~~riV~lSATl~n~~dl~~wl~~~~~ 1526 (2158)
-.++|+||+|.+.+..+..++.+..+....... .+...+++++|||+++.. +.. ....
T Consensus 332 ~~llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~-~~~---~~~~ 407 (661)
T 2d7d_A 332 DFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYE-IEH---TDEM 407 (661)
T ss_dssp SCEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSEEEEECSSCCHHH-HHH---CSSC
T ss_pred CcEEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCCEEEEecCCChhH-HHh---hhCe
Confidence 358999999987654333444443333222111 123678999999986432 211 0110
Q ss_pred ceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccc
Q 000114 1527 GLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKS 1606 (2158)
Q Consensus 1527 ~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~ 1606 (2158)
.-....+.....|. +.+..+. ... ...+..+......+.++||||+|++.|+.++..|..
T Consensus 408 ~~~~~r~~~l~~p~-i~v~~~~-----~~~----~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~---------- 467 (661)
T 2d7d_A 408 VEQIIRPTGLLDPL-IDVRPIE-----GQI----DDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKE---------- 467 (661)
T ss_dssp EEECCCTTCCCCCE-EEEECST-----THH----HHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHH----------
T ss_pred eeeeecccCCCCCe-EEEeccc-----chH----HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHh----------
Confidence 01112222222222 2222221 111 122344445545678999999999999999866632
Q ss_pred cccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecce
Q 000114 1607 AFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQ 1686 (2158)
Q Consensus 1607 ~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~ 1686 (2158)
.+..+.++||++++.+|..+++.|++|.++|||||+++++|+|+|.+.+||
T Consensus 468 -------------------------~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi---- 518 (661)
T 2d7d_A 468 -------------------------IGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVA---- 518 (661)
T ss_dssp -------------------------TTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEE----
T ss_pred -------------------------cCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEE----
Confidence 234578899999999999999999999999999999999999999988777
Q ss_pred eecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH
Q 000114 1687 YYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2158)
Q Consensus 1687 ~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~ 1731 (2158)
.|+.. ....|.+..+|+||+|||||. ..|.|++++......
T Consensus 519 ~~d~d-~~G~p~s~~~~iQr~GRagR~---~~G~~i~~~~~~~~~ 559 (661)
T 2d7d_A 519 ILDAD-KEGFLRSERSLIQTIGRAARN---AEGRVIMYADKITKS 559 (661)
T ss_dssp ETTTT-CCTTTTSHHHHHHHHHTTTTS---TTCEEEEECSSCCHH
T ss_pred EeCcc-cccCCCCHHHHHHHhCcccCC---CCCEEEEEEeCCCHH
Confidence 23321 122467899999999999995 589999999886543
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-17 Score=220.71 Aligned_cols=122 Identities=18% Similarity=0.269 Sum_probs=101.1
Q ss_pred HHHHh-CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCC
Q 000114 727 VVAVA-GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMT 805 (2158)
Q Consensus 727 i~~~~-~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~ 805 (2158)
+.... .+.++||||+|++.++.++..|.+.+. .+.++||+|+
T Consensus 438 l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi-------------------------------------~~~~lh~~~~ 480 (661)
T 2d7d_A 438 IQARIERNERVLVTTLTKKMSEDLTDYLKEIGI-------------------------------------KVNYLHSEIK 480 (661)
T ss_dssp HHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTC-------------------------------------CEEEECTTCC
T ss_pred HHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCC-------------------------------------CeEEEeCCCC
Confidence 44433 467999999999999999999987542 2566799999
Q ss_pred HHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEE
Q 000114 806 RGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIII 885 (2158)
Q Consensus 806 ~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil 885 (2158)
+.+|..+++.|++|.++|||||+++++|+|+|++++||+ |+.+..++ +.|..+|+||+|||||. ..|.++++
T Consensus 481 ~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~----~d~d~~G~-p~s~~~~iQr~GRagR~---~~G~~i~~ 552 (661)
T 2d7d_A 481 TLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAI----LDADKEGF-LRSERSLIQTIGRAARN---AEGRVIMY 552 (661)
T ss_dssp HHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEE----TTTTCCTT-TTSHHHHHHHHHTTTTS---TTCEEEEE
T ss_pred HHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEE----eCcccccC-CCCHHHHHHHhCcccCC---CCCEEEEE
Confidence 999999999999999999999999999999999999998 55422111 23889999999999996 47999999
Q ss_pred cCCCcHHH
Q 000114 886 TGHSELRY 893 (2158)
Q Consensus 886 ~~~~~~~~ 893 (2158)
++..+...
T Consensus 553 ~~~~~~~~ 560 (661)
T 2d7d_A 553 ADKITKSM 560 (661)
T ss_dssp CSSCCHHH
T ss_pred EeCCCHHH
Confidence 98876543
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.3e-16 Score=207.59 Aligned_cols=130 Identities=18% Similarity=0.139 Sum_probs=105.4
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
|+ .|+++|..+++.++.|+ |+.++||+|||++|.+|++..... +. .+++++||++||.|.++.+. .+...
T Consensus 77 G~-~Pt~VQ~~~ip~LlqG~---IaeakTGeGKTLvf~Lp~~L~aL~---G~--qv~VvTPTreLA~Qdae~m~-~l~~~ 146 (997)
T 2ipc_A 77 GM-RHFDVQLIGGAVLHEGK---IAEMKTGEGKTLVATLAVALNALT---GK--GVHVVTVNDYLARRDAEWMG-PVYRG 146 (997)
T ss_dssp CC-CCCHHHHHHHHHHHTTS---EEECCSTHHHHHHHHHHHHHHHTT---CS--CCEEEESSHHHHHHHHHHHH-HHHHT
T ss_pred CC-CCcHHHHhhcccccCCc---eeeccCCCchHHHHHHHHHHHHHh---CC--CEEEEeCCHHHHHHHHHHHH-HHHHh
Confidence 57 89999999999998865 899999999999999999644333 33 68999999999999999888 55566
Q ss_pred CCcEEEEEcCCcchhhh-cccCCcEEEeCHHHH-HHHHhhhh----cccccc---ceeEEEeccccccc
Q 000114 1418 LGMRVVELTGETAMDLK-LLEKGQIIISTPEKW-DALSRRWK----QRKYVQ---QVSLFIIDELHLIG 1477 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~~~-~l~~~~IIV~TPe~l-~~l~r~~~----~~~~l~---~v~llIiDEaH~l~ 1477 (2158)
+|++|+.++|+.+...+ ....++|+|+||+.+ .++++... ....++ ++.++||||+|.++
T Consensus 147 lGLsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 147 LGLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp TTCCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred cCCeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 79999999998876533 334679999999998 56666532 123466 89999999999776
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-16 Score=210.85 Aligned_cols=127 Identities=24% Similarity=0.229 Sum_probs=85.7
Q ss_pred CCCCCCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000114 491 KGMTQLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2158)
Q Consensus 491 ~g~~~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~ 567 (2158)
.|| .++|+|.+++..+ +..+.++++.||||+|||++|++|++.. +.+++|++||++|+.|+.
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~--------------~~~~~~~~~t~~l~~q~~ 68 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL--------------KKKVLIFTRTHSQLDSIY 68 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH--------------TCEEEEEESCHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC--------------CCcEEEEcCCHHHHHHHH
Confidence 467 8999999987654 4556789999999999999999998753 138999999999999999
Q ss_pred HHHHhhcccCCcEEEEEeCCCcc--------------------------------------------------CHhhhcc
Q 000114 568 GNLSNRLQMYDVKVRELSGDQTL--------------------------------------------------TRQQIEE 597 (2158)
Q Consensus 568 ~~~~~~~~~~gi~v~~l~Gd~~~--------------------------------------------------~~~~~~~ 597 (2158)
+.+..+ ++++..+.|.... .......
T Consensus 69 ~~~~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~ 144 (540)
T 2vl7_A 69 KNAKLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKD 144 (540)
T ss_dssp HHHGGG----TCCEEEC---------------------------------------------------------CTTGGG
T ss_pred HHHHhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhc
Confidence 888763 4555555542210 0111356
Q ss_pred ccEEEcchhHH-HHHHhcc-C---CCccccccceEEeecccccc
Q 000114 598 TQIIVTTPEKW-DIITRKS-G---DRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 598 ~~IiV~TPekl-d~l~r~~-~---~~~~l~~v~lIIiDEaH~l~ 636 (2158)
++|+|+|+..+ +...++. . ....+....++||||||.+.
T Consensus 145 adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 145 KDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp CSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred CCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 79999999986 4333332 1 01134567899999999983
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-17 Score=191.35 Aligned_cols=169 Identities=26% Similarity=0.327 Sum_probs=114.9
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHH-HHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAE-VVGNL 570 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q-~~~~~ 570 (2158)
+...|+++|.++++.++.+ .++++++|||+|||++|++++++.+...... ..+.++||++|+++|+.| +.+.+
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~-----~~~~~~lil~p~~~L~~q~~~~~~ 103 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEG-KNIIICLPTGSGKTRVAVYIAKDHLDKKKKA-----SEPGKVIVLVNKVLLVEQLFRKEF 103 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTT-CCEEEECSCHHHHHHHHHHHHHHHHHHHHHT-----TCCCCEEEEESSHHHHHHHHHHTH
T ss_pred CCCCchHHHHHHHHHHhcC-CCEEEEcCCCCCHHHHHHHHHHHHHhhcccc-----cCCCcEEEEECHHHHHHHHHHHHH
Confidence 3458999999999998876 5699999999999999999999877654211 124589999999999999 66667
Q ss_pred HhhcccCCcEEEEEeCCCccCH---hhhccccEEEcchhHHHHHHhccCC----CccccccceEEeecccccccCChhhH
Q 000114 571 SNRLQMYDVKVRELSGDQTLTR---QQIEETQIIVTTPEKWDIITRKSGD----RTYTQLVKLLIIDEIHLLHDNRGPVL 643 (2158)
Q Consensus 571 ~~~~~~~gi~v~~l~Gd~~~~~---~~~~~~~IiV~TPekld~l~r~~~~----~~~l~~v~lIIiDEaH~l~d~rg~~l 643 (2158)
.++.. .++++..++|+..... .....++|+|+||+++......... ...+.++++|||||||++.+. ..+
T Consensus 104 ~~~~~-~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~--~~~ 180 (216)
T 3b6e_A 104 QPFLK-KWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE--AVY 180 (216)
T ss_dssp HHHHT-TTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC---------CH
T ss_pred HHHhc-cCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccC--CcH
Confidence 66544 3788999999876543 2245789999999998544443321 135678999999999998642 224
Q ss_pred HHHHHHHHHHH-hhc---------cccccEEEEccc
Q 000114 644 ESIVARTVRQI-ETT---------KEHIRLVGLSAT 669 (2158)
Q Consensus 644 e~iv~r~~~~~-~~~---------~~~~riv~lSAT 669 (2158)
..++.+++... ... .+.+++|+||||
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 181 NNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 44444332211 111 157899999998
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.5e-17 Score=178.29 Aligned_cols=144 Identities=22% Similarity=0.395 Sum_probs=115.4
Q ss_pred cccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHH
Q 000114 697 PVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREI 776 (2158)
Q Consensus 697 pv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~ 776 (2158)
+..+.+.++.+... .++..+.++ +....++++||||++++.+..++..|...+
T Consensus 7 ~~~i~~~~~~~~~~---~K~~~L~~l-----l~~~~~~~~lVF~~~~~~~~~l~~~L~~~~------------------- 59 (163)
T 2hjv_A 7 TRNIEHAVIQVREE---NKFSLLKDV-----LMTENPDSCIIFCRTKEHVNQLTDELDDLG------------------- 59 (163)
T ss_dssp CCCEEEEEEECCGG---GHHHHHHHH-----HHHHCCSSEEEECSSHHHHHHHHHHHHHTT-------------------
T ss_pred cccceEEEEECChH---HHHHHHHHH-----HHhcCCCcEEEEECCHHHHHHHHHHHHHcC-------------------
Confidence 33456666555432 233333322 233457799999999999999999887643
Q ss_pred HHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCcc
Q 000114 777 LQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAW 856 (2158)
Q Consensus 777 l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~ 856 (2158)
..+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ |+++.
T Consensus 60 ------------------~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~----~~~p~--- 114 (163)
T 2hjv_A 60 ------------------YPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVIN----YDLPL--- 114 (163)
T ss_dssp ------------------CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEE----SSCCS---
T ss_pred ------------------CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEE----eCCCC---
Confidence 34778899999999999999999999999999999999999999999999 66654
Q ss_pred ccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHHh
Q 000114 857 TELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSL 897 (2158)
Q Consensus 857 ~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~l 897 (2158)
++.+|+||+|||||.| ..|.++++++..+..++.++
T Consensus 115 ---~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~~~~~~i 150 (163)
T 2hjv_A 115 ---EKESYVHRTGRTGRAG--NKGKAISFVTAFEKRFLADI 150 (163)
T ss_dssp ---SHHHHHHHTTTSSCTT--CCEEEEEEECGGGHHHHHHH
T ss_pred ---CHHHHHHhccccCcCC--CCceEEEEecHHHHHHHHHH
Confidence 7889999999999987 67999999998887776654
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.1e-17 Score=182.63 Aligned_cols=125 Identities=18% Similarity=0.250 Sum_probs=103.1
Q ss_pred HhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHH
Q 000114 730 VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDR 809 (2158)
Q Consensus 730 ~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R 809 (2158)
....+++||||++++.+..++..|...+ .++..+||+|++.+|
T Consensus 31 ~~~~~~~lVF~~~~~~~~~l~~~L~~~~-------------------------------------~~~~~~~g~~~~~~R 73 (175)
T 2rb4_A 31 SITIGQAIIFCQTRRNAKWLTVEMIQDG-------------------------------------HQVSLLSGELTVEQR 73 (175)
T ss_dssp TSCCSEEEEECSCHHHHHHHHHHHHTTT-------------------------------------CCEEEECSSCCHHHH
T ss_pred hCCCCCEEEEECCHHHHHHHHHHHHHcC-------------------------------------CcEEEEeCCCCHHHH
Confidence 3456799999999999999999887532 357889999999999
Q ss_pred HHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCC
Q 000114 810 QLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2158)
Q Consensus 810 ~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2158)
..+++.|++|.++|||||+++++|+|+|++++||+++.|+++. .+.+..+|+||+|||||.| ..|.++++++..
T Consensus 74 ~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~----~~~~~~~~~qr~GR~gR~g--~~g~~~~~~~~~ 147 (175)
T 2rb4_A 74 ASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQG----EEPDYETYLHRIGRTGRFG--KKGLAFNMIEVD 147 (175)
T ss_dssp HHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--C----CSCCHHHHHHHHCBC------CCEEEEEEECGG
T ss_pred HHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCcc----ccCCHHHHHHHhcccccCC--CCceEEEEEccc
Confidence 9999999999999999999999999999999999965554432 3469999999999999987 679999999998
Q ss_pred cHHHHHHh
Q 000114 890 ELRYYLSL 897 (2158)
Q Consensus 890 ~~~~y~~l 897 (2158)
+...+.++
T Consensus 148 ~~~~~~~i 155 (175)
T 2rb4_A 148 ELPSLMKI 155 (175)
T ss_dssp GHHHHHHH
T ss_pred hHHHHHHH
Confidence 87666543
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.71 E-value=9.9e-17 Score=185.16 Aligned_cols=119 Identities=24% Similarity=0.401 Sum_probs=104.1
Q ss_pred HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHH
Q 000114 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2158)
Q Consensus 729 ~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~ 808 (2158)
....++++||||++++.+..++..|...+ .++..+||+|++.+
T Consensus 27 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-------------------------------------~~~~~lhg~~~~~~ 69 (212)
T 3eaq_A 27 YVASPDRAMVFTRTKAETEEIAQGLLRLG-------------------------------------HPAQALHGDLSQGE 69 (212)
T ss_dssp HHHCCSCEEEECSSHHHHHHHHHHHHHHT-------------------------------------CCEEEECSSSCHHH
T ss_pred HhCCCCeEEEEeCCHHHHHHHHHHHHHcC-------------------------------------CCEEEEECCCCHHH
Confidence 34457899999999999999999987653 34678899999999
Q ss_pred HHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCC
Q 000114 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2158)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2158)
|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. +..+|+||+|||||.| ..|.|+++++.
T Consensus 70 r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~----~~~p~------~~~~~~qr~GR~gR~g--~~g~~~~l~~~ 137 (212)
T 3eaq_A 70 RERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVH----YRLPD------RAEAYQHRSGRTGRAG--RGGRVVLLYGP 137 (212)
T ss_dssp HHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEE----SSCCS------SHHHHHHHHTTBCCCC----BEEEEEECG
T ss_pred HHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEE----CCCCc------CHHHHHHHhcccCCCC--CCCeEEEEEch
Confidence 999999999999999999999999999999999999 66664 7889999999999987 56999999999
Q ss_pred CcHHHHHH
Q 000114 889 SELRYYLS 896 (2158)
Q Consensus 889 ~~~~~y~~ 896 (2158)
.+...+..
T Consensus 138 ~~~~~~~~ 145 (212)
T 3eaq_A 138 RERRDVEA 145 (212)
T ss_dssp GGHHHHHH
T ss_pred hHHHHHHH
Confidence 88666554
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-17 Score=199.60 Aligned_cols=153 Identities=18% Similarity=0.277 Sum_probs=120.1
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
+|+++|.++++.++.+ .+.+++||||+|||+++++++...+... ..++||++|+++|+.|+.+++.+++
T Consensus 113 ~l~~~Q~~ai~~~l~~-~~~ll~~~tGsGKT~~~~~~~~~~~~~~----------~~~~lil~Pt~~L~~q~~~~l~~~~ 181 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYYLENY----------EGKILIIVPTTALTTQMADDFVDYR 181 (282)
T ss_dssp CCCHHHHHHHHHHHHH-SEEEECCCTTSCHHHHHHHHHHHHHHHC----------SSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHhc-CCeEEEcCCCCCcHHHHHHHHHHHHHcC----------CCeEEEEECCHHHHHHHHHHHHHhc
Confidence 7999999999998887 4588899999999999998888776542 2389999999999999999999887
Q ss_pred ccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHH
Q 000114 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQI 654 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~ 654 (2158)
...+..+..++|+...........+|+|+||+.+ .+.. ...+.++++||+||||++. ++.++.++.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l---~~~~--~~~~~~~~~vIiDEaH~~~---~~~~~~il~------ 247 (282)
T 1rif_A 182 LFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTV---VKQP--KEWFSQFGMMMNDECHLAT---GKSISSIIS------ 247 (282)
T ss_dssp SCCGGGEEECSTTCSSTTCCCTTCSEEEECHHHH---TTSC--GGGGGGEEEEEEETGGGCC---HHHHHHHTT------
T ss_pred ccccceEEEEeCCCcchhhhccCCcEEEEchHHH---HhhH--HHHHhhCCEEEEECCccCC---cccHHHHHH------
Confidence 6666778888887665443346789999999853 3332 1457789999999999986 334444433
Q ss_pred hhccccccEEEEccccCCh
Q 000114 655 ETTKEHIRLVGLSATLPNY 673 (2158)
Q Consensus 655 ~~~~~~~riv~lSATlpn~ 673 (2158)
......++++||||+++.
T Consensus 248 -~~~~~~~~l~lSATp~~~ 265 (282)
T 1rif_A 248 -GLNNCMFKFGLSGSLRDG 265 (282)
T ss_dssp -TCTTCCEEEEECSSCCTT
T ss_pred -HhhcCCeEEEEeCCCCCc
Confidence 234578999999999864
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.1e-17 Score=188.17 Aligned_cols=167 Identities=22% Similarity=0.299 Sum_probs=114.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc-CCCceEEEEEcccHHHHHH-HHHHHHHHhcC
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKE-RYRDWEIKFGQ 1416 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~-~~~~~~~v~IaP~raLa~q-~~~~~~~~f~~ 1416 (2158)
...|+|+|.++++.++.+ .++++++|||+|||+++.++++..+.... ...+.+++|++|+++|+.| +.+.+. .+..
T Consensus 31 ~~~l~~~Q~~~i~~~~~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~-~~~~ 108 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALEG-KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQ-PFLK 108 (216)
T ss_dssp CCCCCHHHHHHHHHHHTT-CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHH-HHHT
T ss_pred CCCchHHHHHHHHHHhcC-CCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHH-HHhc
Confidence 458999999999999874 56999999999999999999988776532 1112389999999999999 555565 5544
Q ss_pred CCCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhc----cccccceeEEEecccccccCCCCChHHHHHH
Q 000114 1417 GLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQ----RKYVQQVSLFIIDELHLIGGQGGPVLEVIVS 1489 (2158)
Q Consensus 1417 ~~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~----~~~l~~v~llIiDEaH~l~~~~g~~~e~~is 1489 (2158)
. +.++..++|+..... .....++|+|+||+++...+..... ...+.++++||+||||++.+ +..++.++.
T Consensus 109 ~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~--~~~~~~~~~ 185 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK--EAVYNNIMR 185 (216)
T ss_dssp T-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC---------CHHHHHH
T ss_pred c-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc--CCcHHHHHH
Confidence 3 678888988765432 2334679999999999887766432 13578899999999999863 234555544
Q ss_pred HHHHHH-hh---------cCCCceEEEeccC
Q 000114 1490 RMRYIA-SQ---------VENKIRIVALSTS 1510 (2158)
Q Consensus 1490 rl~~i~-~~---------~~~~~riV~lSAT 1510 (2158)
++.... .. .....++|+||||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 432211 10 0157899999998
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.69 E-value=5.9e-17 Score=180.66 Aligned_cols=114 Identities=22% Similarity=0.302 Sum_probs=100.9
Q ss_pred HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHH
Q 000114 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2158)
Q Consensus 729 ~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~ 808 (2158)
.....+++||||++++.+..++..|...+ .++..+||+|++.+
T Consensus 27 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-------------------------------------~~~~~~hg~~~~~~ 69 (172)
T 1t5i_A 27 DVLEFNQVVIFVKSVQRCIALAQLLVEQN-------------------------------------FPAIAIHRGMPQEE 69 (172)
T ss_dssp HHSCCSSEEEECSSHHHHHHHHHHHHHTT-------------------------------------CCEEEECTTSCHHH
T ss_pred HhCCCCcEEEEECCHHHHHHHHHHHHhcC-------------------------------------CCEEEEECCCCHHH
Confidence 34457899999999999999999987643 34678899999999
Q ss_pred HHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCC
Q 000114 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2158)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2158)
|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. ++.+|+||+|||||.| ..|.++++++.
T Consensus 70 r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~----~d~p~------~~~~~~qr~GR~~R~g--~~g~~~~~~~~ 137 (172)
T 1t5i_A 70 RLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN----YDMPE------DSDTYLHRVARAGRFG--TKGLAITFVSD 137 (172)
T ss_dssp HHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE----SSCCS------SHHHHHHHHHHHTGGG--CCCEEEEEECS
T ss_pred HHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEE----ECCCC------CHHHHHHHhcccccCC--CCcEEEEEEcC
Confidence 999999999999999999999999999999999999 66664 7889999999999987 67999999987
Q ss_pred CcH
Q 000114 889 SEL 891 (2158)
Q Consensus 889 ~~~ 891 (2158)
.+.
T Consensus 138 ~~~ 140 (172)
T 1t5i_A 138 END 140 (172)
T ss_dssp HHH
T ss_pred hhH
Confidence 643
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=176.23 Aligned_cols=120 Identities=19% Similarity=0.374 Sum_probs=100.0
Q ss_pred HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHH
Q 000114 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2158)
Q Consensus 729 ~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~ 808 (2158)
+....+++||||++++.+..++..|...+ .++..+||+|+..+
T Consensus 26 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~~-------------------------------------~~~~~~~~~~~~~~ 68 (165)
T 1fuk_A 26 DSISVTQAVIFCNTRRKVEELTTKLRNDK-------------------------------------FTVSAIYSDLPQQE 68 (165)
T ss_dssp HHTTCSCEEEEESSHHHHHHHHHHHHHTT-------------------------------------CCEEEECTTSCHHH
T ss_pred HhCCCCCEEEEECCHHHHHHHHHHHHHcC-------------------------------------CCEEEEECCCCHHH
Confidence 33457899999999999999999887632 34778899999999
Q ss_pred HHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCC
Q 000114 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2158)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2158)
|..+++.|++|.++|||||+++++|+|+|++++||+ |+++. ++.+|+||+|||||.| ..|.++++++.
T Consensus 69 r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~----~~~p~------~~~~~~qr~GR~gR~g--~~g~~~~~~~~ 136 (165)
T 1fuk_A 69 RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN----YDLPA------NKENYIHRIGRGGRFG--RKGVAINFVTN 136 (165)
T ss_dssp HHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEE----SSCCS------SGGGGGGSSCSCC-------CEEEEEEET
T ss_pred HHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEE----eCCCC------CHHHHHHHhcccccCC--CCceEEEEEcc
Confidence 999999999999999999999999999999999999 55443 5668999999999987 67999999998
Q ss_pred CcHHHHHHh
Q 000114 889 SELRYYLSL 897 (2158)
Q Consensus 889 ~~~~~y~~l 897 (2158)
.+...+..+
T Consensus 137 ~~~~~~~~~ 145 (165)
T 1fuk_A 137 EDVGAMREL 145 (165)
T ss_dssp TTHHHHHHH
T ss_pred hHHHHHHHH
Confidence 887666543
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-17 Score=193.08 Aligned_cols=200 Identities=22% Similarity=0.270 Sum_probs=135.8
Q ss_pred cccccccCCcccccccccCCC-------CCcccccCcceEEecCCCCCCCCCCCCcccccCCCChhhHhhcCCCCCCCHH
Q 000114 427 DTLAFQQGGLFMANRKCDLPE-------GSQRFTNKGYEEIHVPAMKHKPLDPNEKLIKISEMPEWAQPAFKGMTQLNRV 499 (2158)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~lp~-------~s~~~~~~~~eei~vp~~~~~~~~~~~~l~~i~~lp~~~~~~f~g~~~l~~i 499 (2158)
..++|++|+++++ .++.+|. ++.+...+.|+++. +......++..+......++| .+.....|+++
T Consensus 25 ~~~~~~~g~~~~~-~~~~l~~~~w~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~~~~p-----~~~~~~~l~~~ 97 (237)
T 2fz4_A 25 AEIYYERGTIVVK-GDAHVPHAKFDSRSGTYRALAFRYRDII-EYFESNGIEFVDNAADPIPTP-----YFDAEISLRDY 97 (237)
T ss_dssp EEEEEETTEEEEE-SCSCCTTCEEETTTTEEEEEGGGHHHHH-HHHHHTTCCEEEESCCCCCCC-----CCCCCCCCCHH
T ss_pred eEEEEecceEEEe-ccccCCCceeccccchhhcchhhHHHHH-HHHHHcCCCccccccccCCCc-----cccCCCCcCHH
Confidence 4689999999985 6778887 55555555555443 211112222111222222332 22334589999
Q ss_pred HHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCc
Q 000114 500 QSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDV 579 (2158)
Q Consensus 500 Q~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi 579 (2158)
|.+++..++.+ .++++++|||+|||.+++.++... +.+++|++|+++|+.|+.+.+.+ + ++
T Consensus 98 Q~~ai~~~~~~-~~~ll~~~tG~GKT~~a~~~~~~~--------------~~~~liv~P~~~L~~q~~~~~~~-~---~~ 158 (237)
T 2fz4_A 98 QEKALERWLVD-KRGCIVLPTGSGKTHVAMAAINEL--------------STPTLIVVPTLALAEQWKERLGI-F---GE 158 (237)
T ss_dssp HHHHHHHHTTT-SEEEEEESSSTTHHHHHHHHHHHS--------------CSCEEEEESSHHHHHHHHHHHGG-G---CG
T ss_pred HHHHHHHHHhC-CCEEEEeCCCCCHHHHHHHHHHHc--------------CCCEEEEeCCHHHHHHHHHHHHh-C---CC
Confidence 99999988776 459999999999999998887653 12699999999999999999987 3 67
Q ss_pred E-EEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhcc
Q 000114 580 K-VRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTK 658 (2158)
Q Consensus 580 ~-v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~ 658 (2158)
+ +..++|+... ..+|+|+||+.+..... .....+++|||||+|++.+.. +..++. ..
T Consensus 159 ~~v~~~~g~~~~------~~~i~v~T~~~l~~~~~-----~~~~~~~llIiDEaH~l~~~~---~~~i~~--------~~ 216 (237)
T 2fz4_A 159 EYVGEFSGRIKE------LKPLTVSTYDSAYVNAE-----KLGNRFMLLIFDEVHHLPAES---YVQIAQ--------MS 216 (237)
T ss_dssp GGEEEESSSCBC------CCSEEEEEHHHHHHTHH-----HHTTTCSEEEEECSSCCCTTT---HHHHHH--------TC
T ss_pred CeEEEEeCCCCC------cCCEEEEeHHHHHhhHH-----HhcccCCEEEEECCccCCChH---HHHHHH--------hc
Confidence 7 8888887643 57899999997532222 122458999999999987532 333222 12
Q ss_pred ccccEEEEccccCChH
Q 000114 659 EHIRLVGLSATLPNYE 674 (2158)
Q Consensus 659 ~~~riv~lSATlpn~~ 674 (2158)
...++++||||+++.+
T Consensus 217 ~~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 217 IAPFRLGLTATFERED 232 (237)
T ss_dssp CCSEEEEEEESCC---
T ss_pred cCCEEEEEecCCCCCC
Confidence 3678899999987543
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=185.43 Aligned_cols=170 Identities=15% Similarity=0.164 Sum_probs=125.9
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.++++|.++++.+..+ ++++++||||||||+++.++++...........+++++++|+++|+.|+++.+...++...|.
T Consensus 61 p~~~~q~~~i~~i~~g-~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~ 139 (235)
T 3llm_A 61 PVKKFESEILEAISQN-SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGK 139 (235)
T ss_dssp GGGGGHHHHHHHHHHC-SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTS
T ss_pred ChHHHHHHHHHHHhcC-CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCc
Confidence 5789999999999874 569999999999999999999887765333234589999999999999999998777655555
Q ss_pred EEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCC
Q 000114 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN 1500 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~ 1500 (2158)
.++.-.... .......++|+|+||+++..+++. .+++++++|+||||..+ .........++.+.... .
T Consensus 140 ~~g~~~~~~--~~~~~~~~~Ivv~Tpg~l~~~l~~-----~l~~~~~lVlDEah~~~----~~~~~~~~~l~~i~~~~-~ 207 (235)
T 3llm_A 140 SCGYSVRFE--SILPRPHASIMFCTVGVLLRKLEA-----GIRGISHVIVDEIHERD----INTDFLLVVLRDVVQAY-P 207 (235)
T ss_dssp SEEEEETTE--EECCCSSSEEEEEEHHHHHHHHHH-----CCTTCCEEEECCTTSCC----HHHHHHHHHHHHHHHHC-T
T ss_pred eEEEeechh--hccCCCCCeEEEECHHHHHHHHHh-----hhcCCcEEEEECCccCC----cchHHHHHHHHHHHhhC-C
Confidence 554322111 111114568999999999877654 37899999999999742 22233334555555443 4
Q ss_pred CceEEEeccCCCChHHHHHHhccC
Q 000114 1501 KIRIVALSTSLANAKDLGEWIGAT 1524 (2158)
Q Consensus 1501 ~~riV~lSATl~n~~dl~~wl~~~ 1524 (2158)
+.|++++|||+++.. +++|++..
T Consensus 208 ~~~~il~SAT~~~~~-~~~~~~~~ 230 (235)
T 3llm_A 208 EVRIVLMSATIDTSM-FCEYFFNC 230 (235)
T ss_dssp TSEEEEEECSSCCHH-HHHHTTSC
T ss_pred CCeEEEEecCCCHHH-HHHHcCCC
Confidence 789999999998765 99998754
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-16 Score=190.43 Aligned_cols=153 Identities=18% Similarity=0.228 Sum_probs=119.0
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.++|+|.++++.++.+ .+.++++|||+|||+++.+++...+.. ..+ +++|++|+++|+.|++++++ ++....+.
T Consensus 113 ~l~~~Q~~ai~~~l~~-~~~ll~~~tGsGKT~~~~~~~~~~~~~--~~~--~~lil~Pt~~L~~q~~~~l~-~~~~~~~~ 186 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVN-RRRILNLPTSAGRSLIQALLARYYLEN--YEG--KILIIVPTTALTTQMADDFV-DYRLFSHA 186 (282)
T ss_dssp CCCHHHHHHHHHHHHH-SEEEECCCTTSCHHHHHHHHHHHHHHH--CSS--EEEEECSSHHHHHHHHHHHH-HHTSCCGG
T ss_pred CccHHHHHHHHHHHhc-CCeEEEcCCCCCcHHHHHHHHHHHHHc--CCC--eEEEEECCHHHHHHHHHHHH-Hhcccccc
Confidence 7999999999999875 558889999999999998888776654 233 89999999999999999998 55544456
Q ss_pred EEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCC
Q 000114 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN 1500 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~ 1500 (2158)
.+..+.|+..........++|+|+||+.+. +. ....+++++++|+||||++.+ + .+..+...+..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~---~~--~~~~~~~~~~vIiDEaH~~~~---~-------~~~~il~~~~~ 251 (282)
T 1rif_A 187 MIKKIGGGASKDDKYKNDAPVVVGTWQTVV---KQ--PKEWFSQFGMMMNDECHLATG---K-------SISSIISGLNN 251 (282)
T ss_dssp GEEECSTTCSSTTCCCTTCSEEEECHHHHT---TS--CGGGGGGEEEEEEETGGGCCH---H-------HHHHHTTTCTT
T ss_pred eEEEEeCCCcchhhhccCCcEEEEchHHHH---hh--HHHHHhhCCEEEEECCccCCc---c-------cHHHHHHHhhc
Confidence 777887776554444567899999998753 22 223578899999999999862 1 23344445555
Q ss_pred CceEEEeccCCCCh
Q 000114 1501 KIRIVALSTSLANA 1514 (2158)
Q Consensus 1501 ~~riV~lSATl~n~ 1514 (2158)
..++++||||+++.
T Consensus 252 ~~~~l~lSATp~~~ 265 (282)
T 1rif_A 252 CMFKFGLSGSLRDG 265 (282)
T ss_dssp CCEEEEECSSCCTT
T ss_pred CCeEEEEeCCCCCc
Confidence 89999999999874
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-16 Score=178.64 Aligned_cols=116 Identities=19% Similarity=0.317 Sum_probs=88.6
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHH
Q 000114 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2158)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~ 811 (2158)
.++++||||++++.+..++..|...+ .++..+||+|++.+|..
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g-------------------------------------~~~~~lhg~~~~~~r~~ 87 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEG-------------------------------------YACTSIHGDRSQRDREE 87 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTT-------------------------------------CCEEEEC--------CH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcC-------------------------------------CceEEEeCCCCHHHHHH
Confidence 47899999999999999999887643 34778899999999999
Q ss_pred HHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcH
Q 000114 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2158)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~ 891 (2158)
+++.|++|.++|||||+++++|+|+|++++||+ ||++. ++.+|+||+|||||.| ..|.++++++..+.
T Consensus 88 ~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~----~d~p~------s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~ 155 (185)
T 2jgn_A 88 ALHQFRSGKSPILVATAVAARGLDISNVKHVIN----FDLPS------DIEEYVHRIGRTGRVG--NLGLATSFFNERNI 155 (185)
T ss_dssp HHHHHHHTSSSEEEEEC------CCCSBSEEEE----SSCCS------SHHHHHHHHTTBCCTT--SCEEEEEEECGGGG
T ss_pred HHHHHHcCCCeEEEEcChhhcCCCcccCCEEEE----eCCCC------CHHHHHHHccccCCCC--CCcEEEEEEchhhH
Confidence 999999999999999999999999999999999 66664 7889999999999987 67999999988775
Q ss_pred HHHHH
Q 000114 892 RYYLS 896 (2158)
Q Consensus 892 ~~y~~ 896 (2158)
..+.+
T Consensus 156 ~~~~~ 160 (185)
T 2jgn_A 156 NITKD 160 (185)
T ss_dssp GGHHH
T ss_pred HHHHH
Confidence 55443
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=200.37 Aligned_cols=126 Identities=17% Similarity=0.162 Sum_probs=85.9
Q ss_pred CCCCCCHHHHHHHHHHh---cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHh
Q 000114 1338 GFKHFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~---~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f 1414 (2158)
|| .++|+|.+++..++ ..+.++++.||||+|||++|++|++.. .+ +++|++||++|+.|+++++.. +
T Consensus 5 ~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------~~--~~~~~~~t~~l~~q~~~~~~~-l 74 (540)
T 2vl7_A 5 KL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------KK--KVLIFTRTHSQLDSIYKNAKL-L 74 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------TC--EEEEEESCHHHHHHHHHHHGG-G
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------CC--cEEEEcCCHHHHHHHHHHHHh-c
Confidence 46 79999999877653 356789999999999999999998742 33 899999999999999988873 3
Q ss_pred cCCCCcEEEEEcCCcch--------------------------------------------------hhhcccCCcEEEe
Q 000114 1415 GQGLGMRVVELTGETAM--------------------------------------------------DLKLLEKGQIIIS 1444 (2158)
Q Consensus 1415 ~~~~g~~v~~ltG~~~~--------------------------------------------------~~~~l~~~~IIV~ 1444 (2158)
++++..+.|.... ..+....++|||+
T Consensus 75 ----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~ 150 (540)
T 2vl7_A 75 ----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAM 150 (540)
T ss_dssp ----TCCEEEC---------------------------------------------------------CTTGGGCSEEEE
T ss_pred ----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEE
Confidence 3444444442100 0122456799999
Q ss_pred CHHHHHH-HHhhhhc----cccccceeEEEeccccccc
Q 000114 1445 TPEKWDA-LSRRWKQ----RKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1445 TPe~l~~-l~r~~~~----~~~l~~v~llIiDEaH~l~ 1477 (2158)
|+..+.+ ..++... ...+....++||||||.+.
T Consensus 151 n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 151 TYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp ETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred ChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 9999865 3332111 1134677899999999884
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.8e-16 Score=173.27 Aligned_cols=124 Identities=18% Similarity=0.245 Sum_probs=99.1
Q ss_pred cCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHH
Q 000114 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2158)
Q Consensus 1573 ~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~ 1652 (2158)
+.+++||||++++.|..++..|.. .+.++..+||+|++.+|..++
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~~g~~~~~~R~~~~ 77 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQ-----------------------------------DGHQVSLLSGELTVEQRASII 77 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHT-----------------------------------TTCCEEEECSSCCHHHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHH-----------------------------------cCCcEEEEeCCCCHHHHHHHH
Confidence 567899999999999999876632 245699999999999999999
Q ss_pred HHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHH
Q 000114 1653 ALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEY 1732 (2158)
Q Consensus 1653 ~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~ 1732 (2158)
+.|++|.++|||||+++++|+|+|++.+|| .|+...+.....+..+|+||+|||||.| ..|.|++++...+..+
T Consensus 78 ~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi----~~d~p~~~~~~~~~~~~~qr~GR~gR~g--~~g~~~~~~~~~~~~~ 151 (175)
T 2rb4_A 78 QRFRDGKEKVLITTNVCARGIDVKQVTIVV----NFDLPVKQGEEPDYETYLHRIGRTGRFG--KKGLAFNMIEVDELPS 151 (175)
T ss_dssp HHHHTTSCSEEEECCSCCTTTCCTTEEEEE----ESSCCC--CCSCCHHHHHHHHCBC------CCEEEEEEECGGGHHH
T ss_pred HHHHcCCCeEEEEecchhcCCCcccCCEEE----EeCCCCCccccCCHHHHHHHhcccccCC--CCceEEEEEccchHHH
Confidence 999999999999999999999999999999 2222111111278999999999999987 7899999999888766
Q ss_pred HHHHh
Q 000114 1733 YKKFL 1737 (2158)
Q Consensus 1733 ~~k~l 1737 (2158)
++++.
T Consensus 152 ~~~i~ 156 (175)
T 2rb4_A 152 LMKIQ 156 (175)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.2e-16 Score=170.35 Aligned_cols=119 Identities=18% Similarity=0.276 Sum_probs=105.3
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
...+++||||++++.+..++..|.. .+..+..+||+|++.+|..+
T Consensus 33 ~~~~~~lVF~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~hg~~~~~~r~~~ 77 (163)
T 2hjv_A 33 ENPDSCIIFCRTKEHVNQLTDELDD-----------------------------------LGYPCDKIHGGMIQEDRFDV 77 (163)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTTSCHHHHHHH
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHH-----------------------------------cCCcEEEEeCCCCHHHHHHH
Confidence 4577999999999999999866632 34569999999999999999
Q ss_pred HHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH
Q 000114 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2158)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~ 1731 (2158)
++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+||+||.| ..|.|++++...+..
T Consensus 78 ~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi----------~~~~p~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~~ 145 (163)
T 2hjv_A 78 MNEFKRGEYRYLVATDVAARGIDIENISLVI----------NYDLPLEKESYVHRTGRTGRAG--NKGKAISFVTAFEKR 145 (163)
T ss_dssp HHHHHTTSCSEEEECGGGTTTCCCSCCSEEE----------ESSCCSSHHHHHHHTTTSSCTT--CCEEEEEEECGGGHH
T ss_pred HHHHHcCCCeEEEECChhhcCCchhcCCEEE----------EeCCCCCHHHHHHhccccCcCC--CCceEEEEecHHHHH
Confidence 9999999999999999999999999999998 5677889999999999999987 689999999988877
Q ss_pred HHHHHh
Q 000114 1732 YYKKFL 1737 (2158)
Q Consensus 1732 ~~~k~l 1737 (2158)
+++++.
T Consensus 146 ~~~~i~ 151 (163)
T 2hjv_A 146 FLADIE 151 (163)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766553
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.66 E-value=5e-15 Score=195.66 Aligned_cols=343 Identities=18% Similarity=0.175 Sum_probs=208.1
Q ss_pred CCCHHHHHHHHHHh---cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1341 HFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~---~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
+++|.|.+++..++ ..+.++++.||||+|||++|++|++. . .. +++|++||++|+.|+.+++. .+...
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~---~~--~v~i~~pt~~l~~q~~~~~~-~l~~~ 73 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---V---KP--KVLFVVRTHNEFYPIYRDLT-KIREK 73 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---H---CS--EEEEEESSGGGHHHHHHHHT-TCCCS
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---C---CC--eEEEEcCCHHHHHHHHHHHH-HHhhh
Confidence 68999999887654 35677999999999999999999996 1 33 99999999999999998887 66655
Q ss_pred CCcEEEEEcCCcchh------------------------------------------------------hhcccCCcEEE
Q 000114 1418 LGMRVVELTGETAMD------------------------------------------------------LKLLEKGQIII 1443 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~------------------------------------------------------~~~l~~~~IIV 1443 (2158)
.++++..+.|....- .+....++|||
T Consensus 74 ~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV 153 (551)
T 3crv_A 74 RNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIA 153 (551)
T ss_dssp SCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEE
T ss_pred cCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEE
Confidence 678888888732210 11234679999
Q ss_pred eCHHHHHHHHhhhhccccccceeEEEecccccccCCCCC-----------------------------------------
Q 000114 1444 STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP----------------------------------------- 1482 (2158)
Q Consensus 1444 ~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~----------------------------------------- 1482 (2158)
+|+..+.+...+-. ........++||||||.+.+ -..
T Consensus 154 ~~~~~l~~~~~~~~-~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~ 231 (551)
T 3crv_A 154 LTYPYFFIDRYREF-IDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPD 231 (551)
T ss_dssp EETHHHHCHHHHTT-SCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSC
T ss_pred eCchHhcCHHHHHh-cCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999865432211 11224678999999998765 100
Q ss_pred ------------hH---HHHHH---------------------HH----HHHHh------------------------hc
Q 000114 1483 ------------VL---EVIVS---------------------RM----RYIAS------------------------QV 1498 (2158)
Q Consensus 1483 ------------~~---e~~is---------------------rl----~~i~~------------------------~~ 1498 (2158)
.. ..+.. .+ ..+.. .+
T Consensus 232 ~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~ 311 (551)
T 3crv_A 232 EKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLL 311 (551)
T ss_dssp SSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGG
T ss_pred ccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHH
Confidence 00 00110 00 00000 11
Q ss_pred CCC-ceEEEeccCCCChHHHHHHhccCCCc-----eEecCCCCcccccEEEEec-ccccchHHHHHhcChHHHHHHHHhH
Q 000114 1499 ENK-IRIVALSTSLANAKDLGEWIGATSHG-----LFNFPPGVRPVPLEIHIQG-VDITNFEARMQAMTKPTFTAIVQHA 1571 (2158)
Q Consensus 1499 ~~~-~riV~lSATl~n~~dl~~wl~~~~~~-----i~~f~~~~rpv~l~~~i~~-~~~~~~~~~~~~~~k~~~~~i~~~~ 1571 (2158)
... ..+|++|||+.....+.+.+|..... .+.+.+.+ +-...+.+.. .+.+ +..+...+.......+....
T Consensus 312 ~~~~~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~-~~~r~~~~~~~l~~~i~~l~ 389 (551)
T 3crv_A 312 NDNELSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSK-YDMRSDNMWKRYADYLLKIY 389 (551)
T ss_dssp GCTTCEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCC-TTTCCHHHHHHHHHHHHHHH
T ss_pred hccCceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCc-cccCCHHHHHHHHHHHHHHH
Confidence 123 68999999999888888888876322 12233333 2223333321 1111 11000011122222222221
Q ss_pred -hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHH
Q 000114 1572 -KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEV 1650 (2158)
Q Consensus 1572 -~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~ 1650 (2158)
...+.++||++|.+..+.++.. .+..+..-..+++ +..
T Consensus 390 ~~~~g~~lvlF~Sy~~l~~v~~~--------------------------------------~~~~v~~q~~~~~---~~~ 428 (551)
T 3crv_A 390 FQAKANVLVVFPSYEIMDRVMSR--------------------------------------ISLPKYVESEDSS---VED 428 (551)
T ss_dssp HHCSSEEEEEESCHHHHHHHHTT--------------------------------------CCSSEEECCSSCC---HHH
T ss_pred HhCCCCEEEEecCHHHHHHHHHh--------------------------------------cCCcEEEcCCCCC---HHH
Confidence 2356799999999988776620 1122333233444 345
Q ss_pred HHHHHHcCCceEEEec--CccccccCCC---c---cEEEEecceeecC-------------CCCc--C-cCC---CHHHH
Q 000114 1651 VSALFEAGKIKVCVMS--SSMCWGVPLT---A---HLVVVMGTQYYDG-------------QENA--H-TDY---PVTDL 1703 (2158)
Q Consensus 1651 v~~~F~~g~i~VLVaT--~~la~Gvdlp---~---~~vVI~gt~~yd~-------------~~~~--~-~~~---s~~~~ 1703 (2158)
+++.|+.+.-.||+|| ..+..|||+| + ..|||.|.++-.+ ..+. . ..| -+..+
T Consensus 429 ~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l 508 (551)
T 3crv_A 429 LYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTI 508 (551)
T ss_dssp HHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHH
T ss_pred HHHHHHhcCCeEEEEEecceecccccccccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence 6777754344899998 5899999999 3 5677777655332 1011 0 112 35667
Q ss_pred HHhhccCCCCCCCCceEEEEEecCChHHHHHHHhh
Q 000114 1704 LQMMGHASRPLLDNSGKCVILCHAPRKEYYKKFLY 1738 (2158)
Q Consensus 1704 lQr~GRaGR~g~d~~G~~iil~~~~~~~~~~k~l~ 1738 (2158)
.|-+||+-|.. +..|.++++-..-....|.+.+.
T Consensus 509 ~Qa~GRlIR~~-~D~G~v~llD~R~~~~~~~~~~~ 542 (551)
T 3crv_A 509 KQAIGRAIRDV-NDKCNVWLLDKRFESLYWKKNLK 542 (551)
T ss_dssp HHHHHTTCCST-TCEEEEEEESGGGGSHHHHHHTT
T ss_pred HHHhccCccCC-CccEEEEEeehhcccchhhhhce
Confidence 79999999975 45787777655555556666654
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.66 E-value=5.4e-15 Score=195.31 Aligned_cols=127 Identities=20% Similarity=0.223 Sum_probs=97.0
Q ss_pred CCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
+++|.|.+++..+ +..+.++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+.+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~--------------~~~v~i~~pt~~l~~q~~~~~~ 68 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV--------------KPKVLFVVRTHNEFYPIYRDLT 68 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH--------------CSEEEEEESSGGGHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC--------------CCeEEEEcCCHHHHHHHHHHHH
Confidence 6899999977754 4456789999999999999999999971 2389999999999999999998
Q ss_pred hhcccCCcEEEEEeCCCccC------------------------------------------------------Hhhhcc
Q 000114 572 NRLQMYDVKVRELSGDQTLT------------------------------------------------------RQQIEE 597 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~------------------------------------------------------~~~~~~ 597 (2158)
.+....++++..+.|..+.- +.....
T Consensus 69 ~l~~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~ 148 (551)
T 3crv_A 69 KIREKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYK 148 (551)
T ss_dssp TCCCSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGG
T ss_pred HHhhhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhc
Confidence 87666688888888732210 111347
Q ss_pred ccEEEcchhHH-HHHHhccCCCccccccceEEeeccccccc
Q 000114 598 TQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLHD 637 (2158)
Q Consensus 598 ~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~d 637 (2158)
++|||+|+..+ +...+... .......++||||||.+.+
T Consensus 149 adIVV~~~~~l~~~~~~~~~--~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 149 ADVIALTYPYFFIDRYREFI--DIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp CSEEEEETHHHHCHHHHTTS--CCCSTTEEEEETTGGGGGG
T ss_pred CCEEEeCchHhcCHHHHHhc--CCCcCCeEEEEecccchHH
Confidence 89999999997 44444431 1224567899999998765
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.4e-16 Score=186.05 Aligned_cols=119 Identities=24% Similarity=0.362 Sum_probs=98.9
Q ss_pred HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHH
Q 000114 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2158)
Q Consensus 729 ~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~ 808 (2158)
....++++||||++++.+..++..|...+ .++..+||+|++.+
T Consensus 24 ~~~~~~~~LVF~~t~~~~~~l~~~L~~~g-------------------------------------~~~~~lhg~l~~~~ 66 (300)
T 3i32_A 24 YVASPDRAMVFTRTKAETEEIAQGLLRLG-------------------------------------HPAQALHGDMSQGE 66 (300)
T ss_dssp HHHCCSSEEEECSSHHHHHHHHHHHHTTT-------------------------------------CCEEEECSCCCTHH
T ss_pred HhcCCCCEEEEECCHHHHHHHHHHHHhCC-------------------------------------CCEEEEeCCCCHHH
Confidence 33447899999999999999998886532 45778899999999
Q ss_pred HHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCC
Q 000114 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2158)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2158)
|..+++.|++|.++|||||+++++|+|+|++++||+++.|. +..+|+||+|||||.| ..|.|+++++.
T Consensus 67 r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~----------s~~~y~Qr~GRagR~g--~~G~~i~l~~~ 134 (300)
T 3i32_A 67 RERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPD----------RAEAYQHRSGRTGRAG--RGGRVVLLYGP 134 (300)
T ss_dssp HHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCS----------STTHHHHHHTCCC-------CEEEEEECS
T ss_pred HHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcCCCC----------CHHHHHHHccCcCcCC--CCceEEEEeCh
Confidence 99999999999999999999999999999999999944443 5558999999999987 56999999999
Q ss_pred CcHHHHHH
Q 000114 889 SELRYYLS 896 (2158)
Q Consensus 889 ~~~~~y~~ 896 (2158)
.+...+..
T Consensus 135 ~e~~~~~~ 142 (300)
T 3i32_A 135 RERRDVEA 142 (300)
T ss_dssp STHHHHHH
T ss_pred HHHHHHHH
Confidence 88766554
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=178.93 Aligned_cols=169 Identities=15% Similarity=0.130 Sum_probs=117.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.++++|.++++.+..+ ++++++||||||||.++.++++........ ..+.++++++|+++|+.|+++++...+
T Consensus 61 p~~~~q~~~i~~i~~g-~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~------~~~~~~l~~~p~~~la~q~~~~~~~~~ 133 (235)
T 3llm_A 61 PVKKFESEILEAISQN-SVVIIRGATGCGKTTQVPQFILDDFIQNDR------AAECNIVVTQPRRISAVSVAERVAFER 133 (235)
T ss_dssp GGGGGHHHHHHHHHHC-SEEEEECCTTSSHHHHHHHHHHHHHHHTTC------GGGCEEEEEESSHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHhcC-CEEEEEeCCCCCcHHhHHHHHhcchhhcCC------CCceEEEEeccchHHHHHHHHHHHHHh
Confidence 5789999999988766 569999999999999999998887655321 134589999999999999999998765
Q ss_pred c-cCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHH
Q 000114 575 Q-MYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653 (2158)
Q Consensus 575 ~-~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~ 653 (2158)
. ..|..++.-...... .....++|+|+||+++....+. .++++++|||||||.+ +.........+...
T Consensus 134 ~~~~~~~~g~~~~~~~~--~~~~~~~Ivv~Tpg~l~~~l~~-----~l~~~~~lVlDEah~~----~~~~~~~~~~l~~i 202 (235)
T 3llm_A 134 GEEPGKSCGYSVRFESI--LPRPHASIMFCTVGVLLRKLEA-----GIRGISHVIVDEIHER----DINTDFLLVVLRDV 202 (235)
T ss_dssp TCCTTSSEEEEETTEEE--CCCSSSEEEEEEHHHHHHHHHH-----CCTTCCEEEECCTTSC----CHHHHHHHHHHHHH
T ss_pred ccccCceEEEeechhhc--cCCCCCeEEEECHHHHHHHHHh-----hhcCCcEEEEECCccC----CcchHHHHHHHHHH
Confidence 4 334445433222111 1124688999999997333332 3678999999999974 22222222222222
Q ss_pred HhhccccccEEEEccccCChHHHHHHHhcc
Q 000114 654 IETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2158)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~dv~~~l~~~ 683 (2158)
.. ..++.|++++|||+++.. +++|+...
T Consensus 203 ~~-~~~~~~~il~SAT~~~~~-~~~~~~~~ 230 (235)
T 3llm_A 203 VQ-AYPEVRIVLMSATIDTSM-FCEYFFNC 230 (235)
T ss_dssp HH-HCTTSEEEEEECSSCCHH-HHHHTTSC
T ss_pred Hh-hCCCCeEEEEecCCCHHH-HHHHcCCC
Confidence 22 235789999999998754 88888643
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=175.68 Aligned_cols=118 Identities=20% Similarity=0.289 Sum_probs=103.1
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
.+++++||||++++.++.++..|.. .+.++..+||+|++.+|..+
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~lhg~~~~~~r~~~ 73 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLR-----------------------------------LGHPAQALHGDLSQGERERV 73 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHH-----------------------------------HTCCEEEECSSSCHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHH-----------------------------------cCCCEEEEECCCCHHHHHHH
Confidence 5678999999999999988866522 35679999999999999999
Q ss_pred HHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH
Q 000114 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2158)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~ 1731 (2158)
++.|++|.++|||||+++++|+|+|++.+|| ++..|.+..+|+||+|||||.| ..|.|++++...+..
T Consensus 74 ~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi----------~~~~p~~~~~~~qr~GR~gR~g--~~g~~~~l~~~~~~~ 141 (212)
T 3eaq_A 74 LGAFRQGEVRVLVATDVAARGLDIPQVDLVV----------HYRLPDRAEAYQHRSGRTGRAG--RGGRVVLLYGPRERR 141 (212)
T ss_dssp HHHHHSSSCCEEEECTTTTCSSSCCCBSEEE----------ESSCCSSHHHHHHHHTTBCCCC----BEEEEEECGGGHH
T ss_pred HHHHHCCCCeEEEecChhhcCCCCccCcEEE----------ECCCCcCHHHHHHHhcccCCCC--CCCeEEEEEchhHHH
Confidence 9999999999999999999999999999999 5677889999999999999987 679999999988766
Q ss_pred HHHHH
Q 000114 1732 YYKKF 1736 (2158)
Q Consensus 1732 ~~~k~ 1736 (2158)
+++.+
T Consensus 142 ~~~~i 146 (212)
T 3eaq_A 142 DVEAL 146 (212)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.63 E-value=6.9e-16 Score=172.01 Aligned_cols=115 Identities=13% Similarity=0.106 Sum_probs=100.8
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
.+.+++||||++++.|..++..|.. .+.++..+||+|++.+|..+
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~hg~~~~~~r~~~ 73 (172)
T 1t5i_A 29 LEFNQVVIFVKSVQRCIALAQLLVE-----------------------------------QNFPAIAIHRGMPQEERLSR 73 (172)
T ss_dssp SCCSSEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTTSCHHHHHHH
T ss_pred CCCCcEEEEECCHHHHHHHHHHHHh-----------------------------------cCCCEEEEECCCCHHHHHHH
Confidence 4567999999999999999876632 24568999999999999999
Q ss_pred HHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH
Q 000114 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2158)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~ 1731 (2158)
++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||.| ..|.|++++.+.+..
T Consensus 74 ~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi----------~~d~p~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~~ 141 (172)
T 1t5i_A 74 YQQFKDFQRRILVATNLFGRGMDIERVNIAF----------NYDMPEDSDTYLHRVARAGRFG--TKGLAITFVSDENDA 141 (172)
T ss_dssp HHHHHTTSCSEEEESSCCSTTCCGGGCSEEE----------ESSCCSSHHHHHHHHHHHTGGG--CCCEEEEEECSHHHH
T ss_pred HHHHHCCCCcEEEECCchhcCcchhhCCEEE----------EECCCCCHHHHHHHhcccccCC--CCcEEEEEEcChhHH
Confidence 9999999999999999999999999999999 5677889999999999999987 689999999876443
Q ss_pred HH
Q 000114 1732 YY 1733 (2158)
Q Consensus 1732 ~~ 1733 (2158)
.+
T Consensus 142 ~~ 143 (172)
T 1t5i_A 142 KI 143 (172)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=171.69 Aligned_cols=108 Identities=20% Similarity=0.328 Sum_probs=95.0
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHH
Q 000114 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2158)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v 812 (2158)
++++||||+++..+..++..|...+ ..+..+||+|++.+|..+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g-------------------------------------~~~~~lhg~~~~~~R~~~ 96 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKG-------------------------------------VEAVAIHGGKDQEERTKA 96 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHT-------------------------------------CCEEEECTTSCHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcC-------------------------------------CcEEEEeCCCCHHHHHHH
Confidence 5689999999999999999987654 246678999999999999
Q ss_pred HHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCC
Q 000114 813 EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2158)
Q Consensus 813 ~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2158)
++.|++|.++|||||+++++|+|+|++++||+ ||++. ++.+|+||+|||||.| ..|.++++++..
T Consensus 97 l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~d~p~------~~~~~~qr~GR~gR~g--~~g~~i~l~~~~ 161 (191)
T 2p6n_A 97 IEAFREGKKDVLVATDVASKGLDFPAIQHVIN----YDMPE------EIENYVHRIGRTGCSG--NTGIATTFINKA 161 (191)
T ss_dssp HHHHHHTSCSEEEECHHHHTTCCCCCCSEEEE----SSCCS------SHHHHHHHHTTSCC-----CCEEEEEECTT
T ss_pred HHHHhcCCCEEEEEcCchhcCCCcccCCEEEE----eCCCC------CHHHHHHHhCccccCC--CCcEEEEEEcCc
Confidence 99999999999999999999999999999999 66664 7889999999999987 579999998875
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-15 Score=168.87 Aligned_cols=118 Identities=13% Similarity=0.230 Sum_probs=99.8
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
.+.+++||||++++.|..++..|.. .+.++..+||+|+..+|..+
T Consensus 28 ~~~~~~lVF~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~~~~~~~~~r~~~ 72 (165)
T 1fuk_A 28 ISVTQAVIFCNTRRKVEELTTKLRN-----------------------------------DKFTVSAIYSDLPQQERDTI 72 (165)
T ss_dssp TTCSCEEEEESSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTTSCHHHHHHH
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHH-----------------------------------cCCCEEEEECCCCHHHHHHH
Confidence 3568899999999999998866632 24568999999999999999
Q ss_pred HHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH
Q 000114 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2158)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~ 1731 (2158)
++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||.| ..|.|++++...+..
T Consensus 73 ~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi----------~~~~p~~~~~~~qr~GR~gR~g--~~g~~~~~~~~~~~~ 140 (165)
T 1fuk_A 73 MKEFRSGSSRILISTDLLARGIDVQQVSLVI----------NYDLPANKENYIHRIGRGGRFG--RKGVAINFVTNEDVG 140 (165)
T ss_dssp HHHHHTTSCSEEEEEGGGTTTCCCCSCSEEE----------ESSCCSSGGGGGGSSCSCC-------CEEEEEEETTTHH
T ss_pred HHHHHcCCCEEEEEcChhhcCCCcccCCEEE----------EeCCCCCHHHHHHHhcccccCC--CCceEEEEEcchHHH
Confidence 9999999999999999999999999999998 5667889999999999999987 789999999988776
Q ss_pred HHHHH
Q 000114 1732 YYKKF 1736 (2158)
Q Consensus 1732 ~~~k~ 1736 (2158)
.+.++
T Consensus 141 ~~~~~ 145 (165)
T 1fuk_A 141 AMREL 145 (165)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-15 Score=171.92 Aligned_cols=119 Identities=18% Similarity=0.213 Sum_probs=89.5
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
.+++++||||++++.|..++..|.. .+.++..+||+|+..+|..+
T Consensus 44 ~~~~k~lVF~~~~~~~~~l~~~L~~-----------------------------------~g~~~~~lhg~~~~~~r~~~ 88 (185)
T 2jgn_A 44 GKDSLTLVFVETKKGADSLEDFLYH-----------------------------------EGYACTSIHGDRSQRDREEA 88 (185)
T ss_dssp -CCSCEEEEESCHHHHHHHHHHHHH-----------------------------------TTCCEEEEC--------CHH
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHH-----------------------------------cCCceEEEeCCCCHHHHHHH
Confidence 4678899999999999999866622 24569999999999999999
Q ss_pred HHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH
Q 000114 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2158)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~ 1731 (2158)
++.|++|.++|||||+++++|+|+|++.+|| +++.|.++.+|+||+|||||.| ..|.|++++...+..
T Consensus 89 ~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI----------~~d~p~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~~ 156 (185)
T 2jgn_A 89 LHQFRSGKSPILVATAVAARGLDISNVKHVI----------NFDLPSDIEEYVHRIGRTGRVG--NLGLATSFFNERNIN 156 (185)
T ss_dssp HHHHHHTSSSEEEEEC------CCCSBSEEE----------ESSCCSSHHHHHHHHTTBCCTT--SCEEEEEEECGGGGG
T ss_pred HHHHHcCCCeEEEEcChhhcCCCcccCCEEE----------EeCCCCCHHHHHHHccccCCCC--CCcEEEEEEchhhHH
Confidence 9999999999999999999999999999999 5667789999999999999987 689999999887765
Q ss_pred HHHHHh
Q 000114 1732 YYKKFL 1737 (2158)
Q Consensus 1732 ~~~k~l 1737 (2158)
.++++.
T Consensus 157 ~~~~l~ 162 (185)
T 2jgn_A 157 ITKDLL 162 (185)
T ss_dssp GHHHHH
T ss_pred HHHHHH
Confidence 555443
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.5e-15 Score=165.82 Aligned_cols=109 Identities=17% Similarity=0.235 Sum_probs=95.0
Q ss_pred cCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHH
Q 000114 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2158)
Q Consensus 1573 ~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~ 1652 (2158)
.++++||||++++.+..++..|.. .+..+..+||+|++.+|..++
T Consensus 53 ~~~~~lVF~~~~~~~~~l~~~L~~-----------------------------------~g~~~~~lhg~~~~~~R~~~l 97 (191)
T 2p6n_A 53 TPPPVLIFAEKKADVDAIHEYLLL-----------------------------------KGVEAVAIHGGKDQEERTKAI 97 (191)
T ss_dssp SCSCEEEECSCHHHHHHHHHHHHH-----------------------------------HTCCEEEECTTSCHHHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHH-----------------------------------cCCcEEEEeCCCCHHHHHHHH
Confidence 356899999999999998866621 245689999999999999999
Q ss_pred HHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC
Q 000114 1653 ALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1653 ~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~ 1728 (2158)
+.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||.| ..|.|++++...
T Consensus 98 ~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI----------~~d~p~~~~~~~qr~GR~gR~g--~~g~~i~l~~~~ 161 (191)
T 2p6n_A 98 EAFREGKKDVLVATDVASKGLDFPAIQHVI----------NYDMPEEIENYVHRIGRTGCSG--NTGIATTFINKA 161 (191)
T ss_dssp HHHHHTSCSEEEECHHHHTTCCCCCCSEEE----------ESSCCSSHHHHHHHHTTSCC-----CCEEEEEECTT
T ss_pred HHHhcCCCEEEEEcCchhcCCCcccCCEEE----------EeCCCCCHHHHHHHhCccccCC--CCcEEEEEEcCc
Confidence 999999999999999999999999999999 5667889999999999999987 678999998875
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.57 E-value=8.1e-15 Score=176.98 Aligned_cols=118 Identities=19% Similarity=0.290 Sum_probs=100.0
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
..++++||||++++.++.++..|.. .+..+..+||+|++.+|..+
T Consensus 26 ~~~~~~LVF~~t~~~~~~l~~~L~~-----------------------------------~g~~~~~lhg~l~~~~r~~~ 70 (300)
T 3i32_A 26 ASPDRAMVFTRTKAETEEIAQGLLR-----------------------------------LGHPAQALHGDMSQGERERV 70 (300)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHT-----------------------------------TTCCEEEECSCCCTHHHHHH
T ss_pred cCCCCEEEEECCHHHHHHHHHHHHh-----------------------------------CCCCEEEEeCCCCHHHHHHH
Confidence 4578999999999999988866632 24568999999999999999
Q ss_pred HHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH
Q 000114 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2158)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~ 1731 (2158)
++.|++|.++|||||+++++|+|+|++.+|| ++..|.+..+|+||+|||||.| ..|.|++++...+..
T Consensus 71 ~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI----------~~d~p~s~~~y~Qr~GRagR~g--~~G~~i~l~~~~e~~ 138 (300)
T 3i32_A 71 MGAFRQGEVRVLVATDVAARGLDIPQVDLVV----------HYRMPDRAEAYQHRSGRTGRAG--RGGRVVLLYGPRERR 138 (300)
T ss_dssp HHHHHHTSCCEEEECSTTTCSTTCCCCSEEE----------ESSCCSSTTHHHHHHTCCC-------CEEEEEECSSTHH
T ss_pred HHHhhcCCceEEEEechhhcCccccceeEEE----------EcCCCCCHHHHHHHccCcCcCC--CCceEEEEeChHHHH
Confidence 9999999999999999999999999999999 5667888999999999999987 679999999988766
Q ss_pred HHHHH
Q 000114 1732 YYKKF 1736 (2158)
Q Consensus 1732 ~~~k~ 1736 (2158)
+++.+
T Consensus 139 ~~~~i 143 (300)
T 3i32_A 139 DVEAL 143 (300)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.3e-16 Score=175.57 Aligned_cols=115 Identities=20% Similarity=0.290 Sum_probs=99.0
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHH
Q 000114 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2158)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~ 811 (2158)
.++++||||++++.+..++..|...+ .++..+||+|++.+|..
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~~-------------------------------------~~~~~~~g~~~~~~r~~ 71 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREAG-------------------------------------INNCYLEGEMVQGKRNE 71 (170)
Confidence 46789999999999999998887643 24567799999999999
Q ss_pred HHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcH
Q 000114 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSEL 891 (2158)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~ 891 (2158)
+++.|++|.++|||||+++++|+|+|++++||+++.|+ ++.+|+||+|||||.| ..|.++++++..+.
T Consensus 72 ~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~----------~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~ 139 (170)
T 2yjt_D 72 AIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPR----------SGDTYLHRIGRTARAG--RKGTAISLVEAHDH 139 (170)
Confidence 99999999999999999999999999999999944443 5567999999999987 67999999988776
Q ss_pred HHHH
Q 000114 892 RYYL 895 (2158)
Q Consensus 892 ~~y~ 895 (2158)
..+.
T Consensus 140 ~~~~ 143 (170)
T 2yjt_D 140 LLLG 143 (170)
Confidence 5544
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.3e-13 Score=179.43 Aligned_cols=82 Identities=18% Similarity=0.326 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHh---cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1341 HFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~---~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
.++|.|.+.+..++ ..+.++++.||||+|||++|++|++..+... +. +++|++||++|+.|+.+++. ++...
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~--kvli~t~T~~l~~Qi~~el~-~l~~~ 77 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KL--KVLYLVRTNSQEEQVIKELR-SLSST 77 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TC--EEEEEESSHHHHHHHHHHHH-HHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CC--eEEEECCCHHHHHHHHHHHH-HHhhc
Confidence 57999999988654 3467799999999999999999999887652 33 99999999999999999988 45433
Q ss_pred CCcEEEEEcC
Q 000114 1418 LGMRVVELTG 1427 (2158)
Q Consensus 1418 ~g~~v~~ltG 1427 (2158)
.++++..++|
T Consensus 78 ~~~~~~~l~g 87 (620)
T 4a15_A 78 MKIRAIPMQG 87 (620)
T ss_dssp SCCCEEECCC
T ss_pred cCeEEEEEEC
Confidence 3556655554
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.3e-14 Score=165.95 Aligned_cols=140 Identities=22% Similarity=0.245 Sum_probs=106.0
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g 1419 (2158)
..++++|.+++..++.++ ++++++|||+|||.++..++... ++ +++|++|+++|+.|+++.+.+ | +
T Consensus 92 ~~l~~~Q~~ai~~~~~~~-~~ll~~~tG~GKT~~a~~~~~~~------~~--~~liv~P~~~L~~q~~~~~~~-~----~ 157 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDK-RGCIVLPTGSGKTHVAMAAINEL------ST--PTLIVVPTLALAEQWKERLGI-F----G 157 (237)
T ss_dssp CCCCHHHHHHHHHHTTTS-EEEEEESSSTTHHHHHHHHHHHS------CS--CEEEEESSHHHHHHHHHHHGG-G----C
T ss_pred CCcCHHHHHHHHHHHhCC-CEEEEeCCCCCHHHHHHHHHHHc------CC--CEEEEeCCHHHHHHHHHHHHh-C----C
Confidence 479999999999988754 59999999999999998777642 33 799999999999999988874 5 5
Q ss_pred cE-EEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhc
Q 000114 1420 MR-VVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQV 1498 (2158)
Q Consensus 1420 ~~-v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~ 1498 (2158)
.+ +..++|+.. ...+|+|+||+.+...... ...++++|||||+|++.+.. ++.+ ...+
T Consensus 158 ~~~v~~~~g~~~------~~~~i~v~T~~~l~~~~~~-----~~~~~~llIiDEaH~l~~~~---~~~i-------~~~~ 216 (237)
T 2fz4_A 158 EEYVGEFSGRIK------ELKPLTVSTYDSAYVNAEK-----LGNRFMLLIFDEVHHLPAES---YVQI-------AQMS 216 (237)
T ss_dssp GGGEEEESSSCB------CCCSEEEEEHHHHHHTHHH-----HTTTCSEEEEECSSCCCTTT---HHHH-------HHTC
T ss_pred CCeEEEEeCCCC------CcCCEEEEeHHHHHhhHHH-----hcccCCEEEEECCccCCChH---HHHH-------HHhc
Confidence 67 888888764 2568999999987644332 12468999999999996532 3322 2222
Q ss_pred CCCceEEEeccCCCChH
Q 000114 1499 ENKIRIVALSTSLANAK 1515 (2158)
Q Consensus 1499 ~~~~riV~lSATl~n~~ 1515 (2158)
...++++||||+.+.+
T Consensus 217 -~~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 217 -IAPFRLGLTATFERED 232 (237)
T ss_dssp -CCSEEEEEEESCC---
T ss_pred -cCCEEEEEecCCCCCC
Confidence 3678899999997653
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-13 Score=180.67 Aligned_cols=82 Identities=21% Similarity=0.302 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHH---HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSA---LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~---l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
+++|.|.+.+..+ +..+.++++.||||+|||++|++|++..+... +.+++|++||++|+.|+.+.+.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~----------~~kvli~t~T~~l~~Qi~~el~ 72 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER----------KLKVLYLVRTNSQEEQVIKELR 72 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH----------TCEEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc----------CCeEEEECCCHHHHHHHHHHHH
Confidence 5799999998754 45567899999999999999999999987642 2489999999999999999998
Q ss_pred hhcccCCcEEEEEeC
Q 000114 572 NRLQMYDVKVRELSG 586 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~G 586 (2158)
.+....++++..++|
T Consensus 73 ~l~~~~~~~~~~l~g 87 (620)
T 4a15_A 73 SLSSTMKIRAIPMQG 87 (620)
T ss_dssp HHHHHSCCCEEECCC
T ss_pred HHhhccCeEEEEEEC
Confidence 866555666666655
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-15 Score=169.60 Aligned_cols=118 Identities=19% Similarity=0.203 Sum_probs=101.3
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
.+++++||||++++.|..++..|.. .+.++..+||+|+..+|..+
T Consensus 28 ~~~~~~iVF~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~~~g~~~~~~r~~~ 72 (170)
T 2yjt_D 28 PEATRSIVFVRKRERVHELANWLRE-----------------------------------AGINNCYLEGEMVQGKRNEA 72 (170)
Confidence 3467899999999999888865521 24568899999999999999
Q ss_pred HHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH
Q 000114 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2158)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~ 1731 (2158)
++.|++|.++|||||+++++|+|+|++.+|| +++.|.+..+|+||+|||||.| ..|.|++++...+..
T Consensus 73 ~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi----------~~~~p~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~~ 140 (170)
T 2yjt_D 73 IKRLTEGRVNVLVATDVAARGIDIPDVSHVF----------NFDMPRSGDTYLHRIGRTARAG--RKGTAISLVEAHDHL 140 (170)
Confidence 9999999999999999999999999999999 5677889999999999999986 689999998877655
Q ss_pred HHHHH
Q 000114 1732 YYKKF 1736 (2158)
Q Consensus 1732 ~~~k~ 1736 (2158)
+++++
T Consensus 141 ~~~~~ 145 (170)
T 2yjt_D 141 LLGKV 145 (170)
Confidence 54433
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.11 E-value=2e-10 Score=137.02 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=81.5
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHH-hhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHH
Q 000114 732 GKHQVLIFVHSRKETAKTARAIRDT-ALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810 (2158)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~ 810 (2158)
.+.++||||+++..+..++..|... +. .+..+||+++..+|.
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~g~-------------------------------------~~~~l~G~~~~~~R~ 153 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKELNT-------------------------------------EVPFLYGELSKKERD 153 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHHCS-------------------------------------CCCEECTTSCHHHHH
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhcCC-------------------------------------cEEEEECCCCHHHHH
Confidence 4789999999999999988888763 32 245679999999999
Q ss_pred HHHHHHhCC-Cce-EEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCC
Q 000114 811 LVEDLFGDG-HVQ-VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2158)
Q Consensus 811 ~v~~~F~~g-~i~-VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2158)
.+++.|++| .++ +|+||.++++|+|++++++||+++.+|+|. .+.|++||++|.|......++.+...
T Consensus 154 ~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~----------~~~Q~~gR~~R~Gq~~~v~v~~li~~ 223 (271)
T 1z5z_A 154 DIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPA----------VEDQATDRVYRIGQTRNVIVHKLISV 223 (271)
T ss_dssp HHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTT----------TC--------------CCEEEEEEET
T ss_pred HHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChh----------HHHHHHHhccccCCCCceEEEEEeeC
Confidence 999999998 777 789999999999999999999977777776 49999999999986655556666665
Q ss_pred Cc
Q 000114 889 SE 890 (2158)
Q Consensus 889 ~~ 890 (2158)
..
T Consensus 224 ~T 225 (271)
T 1z5z_A 224 GT 225 (271)
T ss_dssp TS
T ss_pred CC
Confidence 54
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.02 E-value=6.6e-10 Score=132.57 Aligned_cols=113 Identities=13% Similarity=0.095 Sum_probs=81.6
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
..+.++||||+++..+..++..|. ...+..+..+||+++..+|..+
T Consensus 110 ~~~~kvlIFs~~~~~~~~l~~~L~----------------------------------~~~g~~~~~l~G~~~~~~R~~~ 155 (271)
T 1z5z_A 110 DEGDKIAIFTQFVDMGKIIRNIIE----------------------------------KELNTEVPFLYGELSKKERDDI 155 (271)
T ss_dssp HTTCCEEEEESCHHHHHHHHHHHH----------------------------------HHHCSCCCEECTTSCHHHHHHH
T ss_pred hCCCeEEEEeccHHHHHHHHHHHH----------------------------------HhcCCcEEEEECCCCHHHHHHH
Confidence 568899999999998877775442 2235568889999999999999
Q ss_pred HHHHHcC-Cce-EEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC
Q 000114 1652 SALFEAG-KIK-VCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1652 ~~~F~~g-~i~-VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~ 1728 (2158)
++.|++| .++ +|+||+++++|+|++++.+|| +++.|.++..|.|++||++|.|..+...++.++...
T Consensus 156 i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI----------~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 156 ISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI----------HFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp HHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEE----------ECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred HHHhcCCCCCCEEEEehhhhcCCcCcccCCEEE----------EECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 9999999 777 799999999999999988888 566777899999999999999966666666666554
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=97.87 E-value=1.2e-05 Score=107.00 Aligned_cols=145 Identities=18% Similarity=0.254 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHcCCCcEEEEccCCCchH--HHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 497 NRVQSRVYKSALSSADNILLCAPTGAGKT--NVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 497 ~~iQ~~~i~~~l~~~~nvlv~APTGsGKT--~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
++.|.++++.++.+ ..++++||+|+||| .+++++++..+... .+.++++++||..+|.++.+.+....
T Consensus 151 ~~~Q~~Ai~~~l~~-~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~---------~~~~vll~APTg~AA~~L~e~~~~~~ 220 (608)
T 1w36_D 151 INWQKVAAAVALTR-RISVISGGPGTGKTTTVAKLLAALIQMADG---------ERCRIRLAAPTGKAAARLTESLGKAL 220 (608)
T ss_dssp CCHHHHHHHHHHTB-SEEEEECCTTSTHHHHHHHHHHHHHHTCSS---------CCCCEEEEBSSHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHhcC-CCEEEEeCCCCCHHHHHHHHHHHHHHhhhc---------CCCeEEEEeCChhHHHHHHHHHHHHH
Confidence 78999999998865 56999999999999 55666666543211 23579999999999999988877655
Q ss_pred ccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHH
Q 000114 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQI 654 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~ 654 (2158)
..+++...... ........ -..++-.+|+... + +.... .. ..+++|||||++++. .+.++.++.
T Consensus 221 ~~l~l~~~~~~-~~~~~~~T--ih~ll~~~~~~~~-~-~~~~~-~~-l~~d~lIIDEAsml~---~~~~~~Ll~------ 284 (608)
T 1w36_D 221 RQLPLTDEQKK-RIPEDAST--LHRLLGAQPGSQR-L-RHHAG-NP-LHLDVLVVDEASMID---LPMMSRLID------ 284 (608)
T ss_dssp HHSSCCSCCCC-SCSCCCBT--TTSCC-------------CTT-SC-CSCSEEEECSGGGCB---HHHHHHHHH------
T ss_pred hcCCCCHHHHh-ccchhhhh--hHhhhccCCCchH-H-HhccC-CC-CCCCEEEEechhhCC---HHHHHHHHH------
Confidence 44443211100 00000000 0112223343211 1 11111 11 268999999999763 223333332
Q ss_pred hhccccccEEEEcc
Q 000114 655 ETTKEHIRLVGLSA 668 (2158)
Q Consensus 655 ~~~~~~~riv~lSA 668 (2158)
..+...|+|++.-
T Consensus 285 -~l~~~~~liLvGD 297 (608)
T 1w36_D 285 -ALPDHARVIFLGD 297 (608)
T ss_dssp -TCCTTCEEEEEEC
T ss_pred -hCCCCCEEEEEcc
Confidence 2355677777643
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=97.70 E-value=6.2e-05 Score=100.01 Aligned_cols=145 Identities=17% Similarity=0.170 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHhcCCCcEEEEccCCchhH--HHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1343 NPIQTQVFTVLYNTDDNVLVAAPTGSGKT--ICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1343 ~~iQ~q~~~~l~~~~~nvli~ApTGSGKT--l~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
++.|.+++..++. +..+++.||+||||| +.+.++.+..+.. ..+.++++++||..++.++.+.+...... +++
T Consensus 151 ~~~Q~~Ai~~~l~-~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~---~~~~~vll~APTg~AA~~L~e~~~~~~~~-l~l 225 (608)
T 1w36_D 151 INWQKVAAAVALT-RRISVISGGPGTGKTTTVAKLLAALIQMAD---GERCRIRLAAPTGKAAARLTESLGKALRQ-LPL 225 (608)
T ss_dssp CCHHHHHHHHHHT-BSEEEEECCTTSTHHHHHHHHHHHHHHTCS---SCCCCEEEEBSSHHHHHHHHHHHTHHHHH-SSC
T ss_pred CHHHHHHHHHHhc-CCCEEEEeCCCCCHHHHHHHHHHHHHHhhh---cCCCeEEEEeCChhHHHHHHHHHHHHHhc-CCC
Confidence 7899999999886 566999999999999 5566666654422 22238999999999999988776532221 122
Q ss_pred EEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCC
Q 000114 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN 1500 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~ 1500 (2158)
..... .........+ ..++-.+|+... ++.. ......++++||||++++.. ..+..+...++.
T Consensus 226 ~~~~~-~~~~~~~~Ti--h~ll~~~~~~~~--~~~~--~~~~l~~d~lIIDEAsml~~----------~~~~~Ll~~l~~ 288 (608)
T 1w36_D 226 TDEQK-KRIPEDASTL--HRLLGAQPGSQR--LRHH--AGNPLHLDVLVVDEASMIDL----------PMMSRLIDALPD 288 (608)
T ss_dssp CSCCC-CSCSCCCBTT--TSCC-------------C--TTSCCSCSEEEECSGGGCBH----------HHHHHHHHTCCT
T ss_pred CHHHH-hccchhhhhh--HhhhccCCCchH--HHhc--cCCCCCCCEEEEechhhCCH----------HHHHHHHHhCCC
Confidence 11000 0000000000 022223343211 1111 11223789999999997741 122333344566
Q ss_pred CceEEEecc
Q 000114 1501 KIRIVALST 1509 (2158)
Q Consensus 1501 ~~riV~lSA 1509 (2158)
..|+|++.-
T Consensus 289 ~~~liLvGD 297 (608)
T 1w36_D 289 HARVIFLGD 297 (608)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEcc
Confidence 788888764
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00019 Score=96.53 Aligned_cols=69 Identities=30% Similarity=0.371 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhh
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~ 573 (2158)
..||+-|.+|+..++..++-.||.||.|+|||.+..-.|.+.+.. +.+|++++||..-|.++.+++...
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~-----------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ-----------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT-----------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC-----------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 468999999999999877778999999999998876666665543 237999999999999999888653
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00055 Score=88.09 Aligned_cols=67 Identities=19% Similarity=0.281 Sum_probs=51.2
Q ss_pred CCCCCHHHHHHHHHHhcC----CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHH
Q 000114 1339 FKHFNPIQTQVFTVLYNT----DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~----~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~ 1409 (2158)
|..+|+-|.+++..++.. +.+++|.||.|||||.+. ..++..+... ... ++++++||...+..+...
T Consensus 23 ~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~-~~~--~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 23 FDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST-GET--GIILAAPTHAAKKILSKL 93 (459)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT-TCC--CEEEEESSHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc-CCc--eEEEecCcHHHHHHHHhh
Confidence 889999999999987543 448999999999999766 4555555552 222 689999999888766553
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0033 Score=84.66 Aligned_cols=82 Identities=24% Similarity=0.269 Sum_probs=63.2
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhh
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~ 573 (2158)
..||+-|.+++. ..+.+++|.||.|||||.+..--+.+.+..+.. ...+++++++|+..+.++.+++.+.
T Consensus 8 ~~Ln~~Q~~av~---~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~-------~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVA---APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENC-------SPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHT---CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCC-------CGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh---CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCC-------ChhhEEEEeccHHHHHHHHHHHHHH
Confidence 478999999997 345679999999999999887777776654321 2347999999999999999999987
Q ss_pred ccc--CCcEEEEEe
Q 000114 574 LQM--YDVKVRELS 585 (2158)
Q Consensus 574 ~~~--~gi~v~~l~ 585 (2158)
++. .++.|..++
T Consensus 78 ~~~~~~~~~v~Tfh 91 (647)
T 3lfu_A 78 MGTSQGGMWVGTFH 91 (647)
T ss_dssp HCSCCTTCEEEEHH
T ss_pred hccccCCcEEEcHH
Confidence 643 345555543
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00029 Score=94.71 Aligned_cols=67 Identities=15% Similarity=0.210 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHH
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~ 1411 (2158)
..+|+-|.+|+..++..++-.||.||+|||||.+..-.|.+.+.+ +. ++++++||..-|+++.+++.
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~--~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ---GL--KVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT---TC--CEEEEESSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC---CC--eEEEEcCchHHHHHHHHHHH
Confidence 479999999999998877778999999999998875555544443 34 89999999999999998886
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0011 Score=85.25 Aligned_cols=69 Identities=17% Similarity=0.277 Sum_probs=51.8
Q ss_pred CCCCCCHHHHHHHHHHHcC----CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSS----ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~----~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~ 567 (2158)
.|..||+-|.+++..++.. +.+++|.||.|+|||.+.. .++..+.... ...+++++||...+.++.
T Consensus 22 ~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~-~~~~~l~~~~---------~~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 22 TFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK-FIIEALISTG---------ETGIILAAPTHAAKKILS 91 (459)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH-HHHHHHHHTT---------CCCEEEEESSHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH-HHHHHHHhcC---------CceEEEecCcHHHHHHHH
Confidence 5788999999999977543 4589999999999997663 4444444321 126999999999888776
Q ss_pred HHH
Q 000114 568 GNL 570 (2158)
Q Consensus 568 ~~~ 570 (2158)
...
T Consensus 92 ~~~ 94 (459)
T 3upu_A 92 KLS 94 (459)
T ss_dssp HHH
T ss_pred hhh
Confidence 654
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00098 Score=89.02 Aligned_cols=68 Identities=19% Similarity=0.282 Sum_probs=53.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHH
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~ 1411 (2158)
+..+|+.|.+|+..++. +..++|.||+|+|||.+..- ++..+.. ..+. ++++++||...+.++.+++.
T Consensus 178 ~~~ln~~Q~~av~~~l~-~~~~li~GppGTGKT~~~~~-~i~~l~~-~~~~--~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQ-RPLSLIQGPPGTGKTVTSAT-IVYHLAR-QGNG--PVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp SCCCCHHHHHHHHHHHT-CSEEEEECCTTSCHHHHHHH-HHHHHHT-SSSC--CEEEEESSHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhc-CCCeEEECCCCCCHHHHHHH-HHHHHHH-cCCC--eEEEEeCcHHHHHHHHHHHH
Confidence 56799999999999886 45689999999999987643 3444443 1233 89999999999999988776
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0011 Score=88.59 Aligned_cols=71 Identities=25% Similarity=0.372 Sum_probs=54.9
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
....+|+.|.+|+..++.+ ..++|.||+|+|||.+..-.+. .+... .+.++++++||...|.++.+.+.
T Consensus 177 ~~~~ln~~Q~~av~~~l~~-~~~li~GppGTGKT~~~~~~i~-~l~~~---------~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 177 GLPDLNHSQVYAVKTVLQR-PLSLIQGPPGTGKTVTSATIVY-HLARQ---------GNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp TSCCCCHHHHHHHHHHHTC-SEEEEECCTTSCHHHHHHHHHH-HHHTS---------SSCCEEEEESSHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhcC-CCeEEECCCCCCHHHHHHHHHH-HHHHc---------CCCeEEEEeCcHHHHHHHHHHHH
Confidence 3567999999999998864 5689999999999987654443 33321 13479999999999999998886
Q ss_pred hh
Q 000114 572 NR 573 (2158)
Q Consensus 572 ~~ 573 (2158)
+.
T Consensus 246 ~~ 247 (624)
T 2gk6_A 246 QT 247 (624)
T ss_dssp TT
T ss_pred hc
Confidence 53
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0012 Score=89.88 Aligned_cols=71 Identities=24% Similarity=0.340 Sum_probs=55.8
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
.+..||+.|.+|+..++.+ ..++|.||.|+|||.+..-.+.+.+... +.++++++||...|.++.+++.
T Consensus 357 ~~~~Ln~~Q~~Av~~~l~~-~~~lI~GppGTGKT~~i~~~i~~l~~~~----------~~~ILv~a~tn~A~d~l~~rL~ 425 (802)
T 2xzl_A 357 NFAQLNSSQSNAVSHVLQR-PLSLIQGPPGTGKTVTSATIVYHLSKIH----------KDRILVCAPSNVAVDHLAAKLR 425 (802)
T ss_dssp TSCCCCHHHHHHHHHHTTC-SEEEEECSTTSSHHHHHHHHHHHHHHHH----------CCCEEEEESSHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHhcC-CCEEEECCCCCCHHHHHHHHHHHHHhCC----------CCeEEEEcCcHHHHHHHHHHHH
Confidence 4568999999999998764 5689999999999987655444433321 2379999999999999999887
Q ss_pred hh
Q 000114 572 NR 573 (2158)
Q Consensus 572 ~~ 573 (2158)
+.
T Consensus 426 ~~ 427 (802)
T 2xzl_A 426 DL 427 (802)
T ss_dssp HT
T ss_pred hh
Confidence 64
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0016 Score=88.93 Aligned_cols=69 Identities=20% Similarity=0.287 Sum_probs=54.4
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHH
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~ 1412 (2158)
+..+|+.|.+|+..++. +..++|.||+|||||.+..-.+ ..+... .+. ++++++||...++++.+++.+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~-~~~~lI~GppGTGKT~~i~~~i-~~l~~~-~~~--~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQ-RPLSLIQGPPGTGKTVTSATIV-YHLSKI-HKD--RILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp SCCCCHHHHHHHHHHTT-CSEEEEECSTTSSHHHHHHHHH-HHHHHH-HCC--CEEEEESSHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhc-CCCEEEECCCCCCHHHHHHHHH-HHHHhC-CCC--eEEEEcCcHHHHHHHHHHHHh
Confidence 56899999999999886 4568999999999998764433 333321 234 899999999999999998873
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0019 Score=88.03 Aligned_cols=68 Identities=19% Similarity=0.296 Sum_probs=53.8
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHH
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWE 1411 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~ 1411 (2158)
...+|+.|.+|+..++. +..++|.||+|+|||.+.. .++..+.. ..+. ++++++||...+.++.+.+.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~-~~~~lI~GppGTGKT~ti~-~~i~~l~~-~~~~--~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQ-RPLSLIQGPPGTGKTVTSA-TIVYHLAR-QGNG--PVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp SCCCCHHHHHHHHHHHT-SSEEEEECCTTSCHHHHHH-HHHHHHHT-TCSS--CEEEEESSHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHhcc-CCeEEEEcCCCCCHHHHHH-HHHHHHHH-cCCC--cEEEEcCcHHHHHHHHHHHH
Confidence 56799999999999886 4568999999999998763 44444443 1233 89999999999999888776
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0025 Score=86.82 Aligned_cols=71 Identities=25% Similarity=0.358 Sum_probs=54.7
Q ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 492 g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
....||+.|.+|+..++.+ ...+|.||.|+|||.+..-. +..+... .+.++++++||...|.++.+.+.
T Consensus 353 ~~~~Ln~~Q~~Av~~~l~~-~~~lI~GppGTGKT~ti~~~-i~~l~~~---------~~~~ilv~a~tn~A~~~l~~~l~ 421 (800)
T 2wjy_A 353 GLPDLNHSQVYAVKTVLQR-PLSLIQGPPGTGKTVTSATI-VYHLARQ---------GNGPVLVCAPSNIAVDQLTEKIH 421 (800)
T ss_dssp TSCCCCHHHHHHHHHHHTS-SEEEEECCTTSCHHHHHHHH-HHHHHTT---------CSSCEEEEESSHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHhccC-CeEEEEcCCCCCHHHHHHHH-HHHHHHc---------CCCcEEEEcCcHHHHHHHHHHHH
Confidence 3457999999999998864 56899999999999876443 3343321 12379999999999999988876
Q ss_pred hh
Q 000114 572 NR 573 (2158)
Q Consensus 572 ~~ 573 (2158)
..
T Consensus 422 ~~ 423 (800)
T 2wjy_A 422 QT 423 (800)
T ss_dssp TT
T ss_pred Hh
Confidence 53
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0029 Score=83.21 Aligned_cols=62 Identities=18% Similarity=0.131 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHH
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~ 1408 (2158)
.+++.|.+++..++. +..++|.||.|+|||.+. ..++..+.. .+. ++++++||...+....+
T Consensus 189 ~L~~~Q~~Av~~~~~-~~~~~I~G~pGTGKTt~i-~~l~~~l~~--~g~--~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 189 GLSEEQASVLDQLAG-HRLVVLTGGPGTGKSTTT-KAVADLAES--LGL--EVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TCCHHHHHHHHHHTT-CSEEEEECCTTSCHHHHH-HHHHHHHHH--TTC--CEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCEEEEEcCCCCCHHHHH-HHHHHHHHh--cCC--eEEEecCcHHHHHHhHh
Confidence 689999999999876 567999999999999765 445555554 233 78999999998876654
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0055 Score=80.49 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
.+++.|.+++..++. +..+++.||.|+|||.+.. .++..+... +.++++++||...+..+.+..
T Consensus 189 ~L~~~Q~~Av~~~~~-~~~~~I~G~pGTGKTt~i~-~l~~~l~~~----------g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLAG-HRLVVLTGGPGTGKSTTTK-AVADLAESL----------GLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TCCHHHHHHHHHHTT-CSEEEEECCTTSCHHHHHH-HHHHHHHHT----------TCCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCEEEEEcCCCCCHHHHHH-HHHHHHHhc----------CCeEEEecCcHHHHHHhHhhh
Confidence 689999999998875 4679999999999997643 344444332 347999999999888776543
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.046 Score=60.38 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=29.6
Q ss_pred cCCCCCCCHHHHHHHHHHH--------cCCCcEEEEccCCCchHHHHHH
Q 000114 490 FKGMTQLNRVQSRVYKSAL--------SSADNILLCAPTGAGKTNVAVL 530 (2158)
Q Consensus 490 f~g~~~l~~iQ~~~i~~~l--------~~~~nvlv~APTGsGKT~~a~l 530 (2158)
|.+|..-++-|.+++..+. ..+.+++++||+|+|||..+..
T Consensus 9 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~ 57 (180)
T 3ec2_A 9 LDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVA 57 (180)
T ss_dssp SSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHH
Confidence 3445444678888887664 2356799999999999977643
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.095 Score=57.79 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHh--------cCCCcEEEEccCCchhHHHHHHHHHHHHH
Q 000114 1343 NPIQTQVFTVLY--------NTDDNVLVAAPTGSGKTICSEFAILRNHQ 1383 (2158)
Q Consensus 1343 ~~iQ~q~~~~l~--------~~~~nvli~ApTGSGKTl~a~l~il~~l~ 1383 (2158)
++.|.+++..+. ..+.++++.||+|+|||..+. ++...+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~-~i~~~~~ 63 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV-ATLKAIY 63 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH-HHHHHHH
Confidence 557887777653 245789999999999998773 3444443
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.078 Score=70.22 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.|+|+|...+..+ .+...+++.+|-|+|||.+....++..+... .+..+++++|++..|.++...++..+
T Consensus 163 ~l~p~Q~~i~~~l-~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~---------~~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 163 QLRDYQRDMLKIM-SSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN---------KDKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp CCCHHHHHHHHHH-HHCSEEEEEECSSSCHHHHHHHHHHHHHHTS---------SSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhh-ccccEEEEEEcCccChHHHHHHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 5899999999876 3345589999999999988765555554432 23479999999999999998888776
Q ss_pred ccC
Q 000114 575 QMY 577 (2158)
Q Consensus 575 ~~~ 577 (2158)
...
T Consensus 233 ~~~ 235 (592)
T 3cpe_A 233 ELL 235 (592)
T ss_dssp TTS
T ss_pred HhC
Confidence 543
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.098 Score=64.75 Aligned_cols=70 Identities=9% Similarity=0.050 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHh
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f 1414 (2158)
.++|+|...+..+.. .+-+++..+-+.|||.++...++..+.. .++. .+++++|++..|..+++.++..+
T Consensus 163 ~L~p~Qk~il~~l~~-~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~--~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSS-KRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDK--AVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHHH-SSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSC--EEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhcc-CcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCC--eEEEEeCCHHHHHHHHHHHHHHH
Confidence 689999999988753 3458999999999998876655544333 2333 89999999999998887777544
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.036 Score=74.56 Aligned_cols=93 Identities=20% Similarity=0.167 Sum_probs=67.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
+..+|+-|.+++. ..+.+++|.|+.|||||.+..--+...+.... ...-+++++++|+..+.++.+++.+.++..
T Consensus 7 ~~~Ln~~Q~~av~---~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-~~~~~iL~ltft~~aa~e~~~rl~~~~~~~- 81 (647)
T 3lfu_A 7 LDSLNDKQREAVA---APRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-CSPYSIMAVTFTNKAAAEMRHRIGQLMGTS- 81 (647)
T ss_dssp HTTCCHHHHHHHT---CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-CCGGGEEEEESSHHHHHHHHHHHHHHHCSC-
T ss_pred hhcCCHHHHHHHh---CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-CChhhEEEEeccHHHHHHHHHHHHHHhccc-
Confidence 3579999999997 34667999999999999887666665555421 111279999999999999999998655421
Q ss_pred CcEEEEEcCCcchhhhcccCCcEEEeCHHHHHH-HHhh
Q 000114 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDA-LSRR 1455 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~-l~r~ 1455 (2158)
...+-|+|...|.. +++.
T Consensus 82 -------------------~~~~~v~Tfhs~~~~il~~ 100 (647)
T 3lfu_A 82 -------------------QGGMWVGTFHGLAHRLLRA 100 (647)
T ss_dssp -------------------CTTCEEEEHHHHHHHHHHH
T ss_pred -------------------cCCcEEEcHHHHHHHHHHH
Confidence 13578889887743 4443
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.26 Score=61.04 Aligned_cols=71 Identities=20% Similarity=0.212 Sum_probs=54.7
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.|+|+|...+..+. ....+++..|-+.|||.++...++..+... .+..+++++|++.-|.++.+.+...+
T Consensus 163 ~L~p~Qk~il~~l~-~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~---------~g~~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 163 QLRDYQRDMLKIMS-SKRMTVCNLSRQLGKTTVVAIFLAHFVCFN---------KDKAVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp CCCHHHHHHHHHHH-HSSEEEEEECSSSCHHHHHHHHHHHHHHSS---------SSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhc-cCcEEEEEEcCcCChhHHHHHHHHHHHHhC---------CCCeEEEEeCCHHHHHHHHHHHHHHH
Confidence 78999999998654 334589999999999988766665544332 23479999999999998888777665
Q ss_pred c
Q 000114 575 Q 575 (2158)
Q Consensus 575 ~ 575 (2158)
.
T Consensus 233 ~ 233 (385)
T 2o0j_A 233 E 233 (385)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B | Back alignment and structure |
|---|
Probab=94.63 E-value=0.041 Score=50.39 Aligned_cols=56 Identities=21% Similarity=0.186 Sum_probs=52.0
Q ss_pred CccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHcc
Q 000114 1977 SMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 2035 (2158)
Q Consensus 1977 s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~ 2035 (2158)
.+|.+|||++...+.+|.++| |.|+.+|..++.++...+.++++....++...++.
T Consensus 7 ~~l~~L~Gi~~~~~~kL~e~G---i~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 7 DDLLNLEGVDRDLAFKLAARG---VCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN 62 (70)
T ss_dssp HHHHSSTTCCHHHHHHHHTTT---CCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred hHHHHcCCCCHHHHHHHHHcC---CCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 458899999999999999999 99999999999999999999999999999888775
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.27 Score=59.30 Aligned_cols=130 Identities=13% Similarity=0.145 Sum_probs=64.9
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCC---ceEEEEEcccH-HHHHHHHHHHHHHhcCCCCcEEEEEcCCcch
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETG---VMRAVYIAPLE-ALAKERYRDWEIKFGQGLGMRVVELTGETAM 1431 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~---~~~~v~IaP~r-aLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~ 1431 (2158)
...+++|.||+|+|||.++- .+++.+......+ .+..++|--.. .--.+.+..+.+.+. |.++ +++.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~-~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~---g~~~---~~~~-- 114 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVN-DVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAIS---KENL---CGDI-- 114 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHH-HHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHS---CCC-----CCC--
T ss_pred CCCeEEEECCCCCCHHHHHH-HHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhc---CCCC---CchH--
Confidence 45689999999999998874 4455554322111 24566664211 111233333333442 2111 1100
Q ss_pred hhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCC
Q 000114 1432 DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (2158)
Q Consensus 1432 ~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl 1511 (2158)
+-+.+..++.... ..-...-++++||+|.+.+. + ++-.+..+...-..+.-+|+.++|+
T Consensus 115 -------------~~~~L~~~f~~~~--~~~~~~~ii~lDE~d~l~~q-----~-~L~~l~~~~~~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 115 -------------SLEALNFYITNVP--KAKKRKTLILIQNPENLLSE-----K-ILQYFEKWISSKNSKLSIICVGGHN 173 (318)
T ss_dssp -------------CHHHHHHHHHHSC--GGGSCEEEEEEECCSSSCCT-----H-HHHHHHHHHHCSSCCEEEEEECCSS
T ss_pred -------------HHHHHHHHHHHhh--hccCCceEEEEecHHHhhcc-----h-HHHHHHhcccccCCcEEEEEEecCc
Confidence 1223333333210 11245678999999998721 1 2222222322223467788889998
Q ss_pred CChH
Q 000114 1512 ANAK 1515 (2158)
Q Consensus 1512 ~n~~ 1515 (2158)
.+..
T Consensus 174 d~~~ 177 (318)
T 3te6_A 174 VTIR 177 (318)
T ss_dssp CCCH
T ss_pred ccch
Confidence 6643
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=94.45 E-value=0.035 Score=75.00 Aligned_cols=86 Identities=19% Similarity=0.157 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.||+-|.+++.. .+.+++|.|+.|||||.+..--+.+.+..... ...++++|+.|+..+.++.+++.+.+
T Consensus 2 ~L~~~Q~~av~~---~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~-------~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-------QARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC-------CGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC---CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCC-------CHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 589999999874 35679999999999999887777777665321 23479999999999999999998875
Q ss_pred ccCCcEEEEEeCCCccCHhhhccccEEEcchhHH
Q 000114 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW 608 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekl 608 (2158)
+..+ ...+-|+|-..|
T Consensus 72 ~~~~------------------~~~~~v~Tfhs~ 87 (673)
T 1uaa_A 72 GRKE------------------ARGLMISTFHTL 87 (673)
T ss_dssp CTTT------------------TTTSEEEEHHHH
T ss_pred Cccc------------------ccCCEEEeHHHH
Confidence 4311 124678888876
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.19 Score=66.40 Aligned_cols=72 Identities=8% Similarity=0.038 Sum_probs=55.1
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~ 1416 (2158)
.++|+|...+..+.. ...+++.+|-|+|||.+....++..+.. .++. ++++++|++..+.+.+..++..+..
T Consensus 163 ~l~p~Q~~i~~~l~~-~r~~~i~~~Rq~GKS~~~a~~~l~~~~~-~~~~--~i~~va~t~~qA~~~~~~i~~~i~~ 234 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSS-KRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDK--AVGILAHKGSMSAEVLDRTKQAIEL 234 (592)
T ss_dssp CCCHHHHHHHHHHHH-CSEEEEEECSSSCHHHHHHHHHHHHHHT-SSSC--EEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHhhcc-ccEEEEEEcCccChHHHHHHHHHHHHHh-CCCC--eEEEEECCHHHHHHHHHHHHHHHHh
Confidence 589999999988743 4558999999999998876554444443 2333 8999999999999999888755543
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.051 Score=73.79 Aligned_cols=110 Identities=20% Similarity=0.223 Sum_probs=75.2
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhh
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~ 573 (2158)
..||+-|.+++.. .+.+++|.|+.|||||.+..--+.+.+..... ...++++|+.|+..|.++.+++.+.
T Consensus 10 ~~Ln~~Q~~av~~---~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~-------~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHV-------APWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCC-------CGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC---CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCC-------CHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4789999999874 35679999999999999887777777664211 2347999999999999999999886
Q ss_pred cccCCcEEEEEeCCCccCHhhhccccEEEcchhHH-HHHHhccCCCccccccceEEeeccc
Q 000114 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIH 633 (2158)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH 633 (2158)
++.. ...+-|+|-..| ..+.|......-+ .-..-|+|+.+
T Consensus 80 l~~~-------------------~~~~~v~Tfhs~~~~ilr~~~~~~g~-~~~f~i~d~~d 120 (724)
T 1pjr_A 80 LGGA-------------------AEDVWISTFHSMCVRILRRDIDRIGI-NRNFSILDPTD 120 (724)
T ss_dssp HGGG-------------------GTTSEEEEHHHHHHHHHHHHGGGGTC-CTTCEECCHHH
T ss_pred hccc-------------------ccCcEEeeHHHHHHHHHHHHHHHhCC-CCCCEECCHHH
Confidence 5421 124678888876 3333332111100 12356777654
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.37 Score=58.08 Aligned_cols=127 Identities=9% Similarity=0.123 Sum_probs=62.9
Q ss_pred CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccH-----HHHHHHHHHHHhhcccCCcEEEEEe
Q 000114 511 ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK-----ALVAEVVGNLSNRLQMYDVKVRELS 585 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~k-----aLa~q~~~~~~~~~~~~gi~v~~l~ 585 (2158)
..+++++||+|+|||.++-.. ++.+...... .....+..++|--+. ....++++.+ . |.++ +
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v-~~~L~~~~~~---~~~~~~~~v~INc~~~~t~~~~~~~I~~~L----~--g~~~---~ 111 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDV-MDELITSSAR---KELPIFDYIHIDALELAGMDALYEKIWFAI----S--KENL---C 111 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHH-HHHHHHTTTT---TSSCCEEEEEEETTCCC--HHHHHHHHHHH----S--CCC-----
T ss_pred CCeEEEECCCCCCHHHHHHHH-HHHHHHHhhh---ccCCceEEEEEeccccCCHHHHHHHHHHHh----c--CCCC---C
Confidence 457999999999999877544 4555432111 011246777775332 2223333332 1 1111 0
Q ss_pred CCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEE
Q 000114 586 GDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVG 665 (2158)
Q Consensus 586 Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~ 665 (2158)
++. +-+.+..+..... ..-...-+|++||+|.+. . ... +-.+.++......++-+|+
T Consensus 112 ~~~---------------~~~~L~~~f~~~~--~~~~~~~ii~lDE~d~l~-~-q~~----L~~l~~~~~~~~s~~~vI~ 168 (318)
T 3te6_A 112 GDI---------------SLEALNFYITNVP--KAKKRKTLILIQNPENLL-S-EKI----LQYFEKWISSKNSKLSIIC 168 (318)
T ss_dssp CCC---------------CHHHHHHHHHHSC--GGGSCEEEEEEECCSSSC-C-THH----HHHHHHHHHCSSCCEEEEE
T ss_pred chH---------------HHHHHHHHHHHhh--hccCCceEEEEecHHHhh-c-chH----HHHHHhcccccCCcEEEEE
Confidence 100 1122322222110 011234689999999987 2 222 2233333333344677888
Q ss_pred EccccCCh
Q 000114 666 LSATLPNY 673 (2158)
Q Consensus 666 lSATlpn~ 673 (2158)
.++|+.+.
T Consensus 169 i~n~~d~~ 176 (318)
T 3te6_A 169 VGGHNVTI 176 (318)
T ss_dssp ECCSSCCC
T ss_pred EecCcccc
Confidence 99997654
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=93.43 E-value=0.084 Score=71.23 Aligned_cols=91 Identities=23% Similarity=0.221 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc-CCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~-~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g 1419 (2158)
.+||-|.+++.. .+.+++|.|+.|||||.+..--+.+.+.... +.. ++++|+.|+..+.++.+++.+.++..
T Consensus 2 ~L~~~Q~~av~~---~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~--~IL~lTfT~~Aa~em~~Rl~~~l~~~-- 74 (673)
T 1uaa_A 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQAR--HIAAVTFTNKAAREMKERVGQTLGRK-- 74 (673)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGG--GEEEEESSHHHHHHHHHHHHHHSCTT--
T ss_pred CCCHHHHHHHhC---CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHH--HeEEEeccHHHHHHHHHHHHHHcCcc--
Confidence 589999999874 3677999999999999887666665555421 223 79999999999999999888655421
Q ss_pred cEEEEEcCCcchhhhcccCCcEEEeCHHHHH-HHHhh
Q 000114 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWD-ALSRR 1455 (2158)
Q Consensus 1420 ~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~-~l~r~ 1455 (2158)
....+-|+|...|. .+++.
T Consensus 75 -----------------~~~~~~v~Tfhs~~~~il~~ 94 (673)
T 1uaa_A 75 -----------------EARGLMISTFHTLGLDIIKR 94 (673)
T ss_dssp -----------------TTTTSEEEEHHHHHHHHHHH
T ss_pred -----------------cccCCEEEeHHHHHHHHHHH
Confidence 01257788887774 34443
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
Probab=92.91 E-value=0.14 Score=69.45 Aligned_cols=110 Identities=22% Similarity=0.182 Sum_probs=73.2
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g 1419 (2158)
..+||-|.+++.. .+.+++|.|+.|||||.+..--+...+.... -..-++++|+.|+..|.++.+++.+.++..
T Consensus 10 ~~Ln~~Q~~av~~---~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~-- 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-VAPWNILAITFTNKAAREMRERVQSLLGGA-- 83 (724)
T ss_dssp TTSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-CCGGGEEEEESSHHHHHHHHHHHHHHHGGG--
T ss_pred hhCCHHHHHHHhC---CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-CCHHHeEEEeccHHHHHHHHHHHHHHhccc--
Confidence 5799999999864 3567999999999999887666665555321 111279999999999999999888655421
Q ss_pred cEEEEEcCCcchhhhcccCCcEEEeCHHHHH-HHHhhhhccccccceeEEEecccc
Q 000114 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWD-ALSRRWKQRKYVQQVSLFIIDELH 1474 (2158)
Q Consensus 1420 ~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~-~l~r~~~~~~~l~~v~llIiDEaH 1474 (2158)
...+-|+|-..|. .+++.......+ .-++-|+|+.+
T Consensus 84 ------------------~~~~~v~Tfhs~~~~ilr~~~~~~g~-~~~f~i~d~~d 120 (724)
T 1pjr_A 84 ------------------AEDVWISTFHSMCVRILRRDIDRIGI-NRNFSILDPTD 120 (724)
T ss_dssp ------------------GTTSEEEEHHHHHHHHHHHHGGGGTC-CTTCEECCHHH
T ss_pred ------------------ccCcEEeeHHHHHHHHHHHHHHHhCC-CCCCEECCHHH
Confidence 1246788877764 344442221111 11245677655
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=92.61 E-value=0.35 Score=58.75 Aligned_cols=143 Identities=17% Similarity=0.180 Sum_probs=78.8
Q ss_pred cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEE-EEcCCcchh-
Q 000114 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV-ELTGETAMD- 1432 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~-~ltG~~~~~- 1432 (2158)
..++-++|+|++|+|||..++-.+...... +. +++|++.- .-..|+..++....... ... ...|..+..
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~---g~--~Vl~fSlE-ms~~ql~~Rlls~~~~v---~~~~l~~g~Ls~~e 114 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALND---DR--GVAVFSLE-MSAEQLALRALSDLTSI---NMHDLESGRLDDDQ 114 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TC--EEEEEESS-SCHHHHHHHHHHHHHCC---CHHHHHHTCCCHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CC--eEEEEeCC-CCHHHHHHHHHHHhhCC---CHHHHhcCCCCHHH
Confidence 456779999999999998775544443332 33 67777542 22334444433222211 100 011222111
Q ss_pred -------hhcccCCcEEE-e----CHHHHHHHHhhhhccccccceeEEEecccccccCC-----CCChHHHHHHHHHHHH
Q 000114 1433 -------LKLLEKGQIII-S----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-----GGPVLEVIVSRMRYIA 1495 (2158)
Q Consensus 1433 -------~~~l~~~~IIV-~----TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~-----~g~~~e~~isrl~~i~ 1495 (2158)
...+...++.| - |+..+....+++... ...+++||||-++.+... +...+..+...++.++
T Consensus 115 ~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~--~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lA 192 (338)
T 4a1f_A 115 WENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQ--HKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLA 192 (338)
T ss_dssp HHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHH--CTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHh--cCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHH
Confidence 11223345555 2 345555555554322 116999999999988542 2344666777788777
Q ss_pred hhcCCCceEEEeccC
Q 000114 1496 SQVENKIRIVALSTS 1510 (2158)
Q Consensus 1496 ~~~~~~~riV~lSAT 1510 (2158)
+.+ ++.+|++|-.
T Consensus 193 kel--~vpVi~lsQl 205 (338)
T 4a1f_A 193 REL--EIPIIALVQL 205 (338)
T ss_dssp HHH--TSCEEEEEEC
T ss_pred HHc--CCeEEEEEec
Confidence 654 6788888764
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=92.51 E-value=0.14 Score=54.72 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=16.4
Q ss_pred CCCcEEEEccCCCchHHHHH
Q 000114 510 SADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~ 529 (2158)
..+.+++++|+|+|||..+-
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45679999999999997653
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=92.29 E-value=0.34 Score=53.71 Aligned_cols=38 Identities=16% Similarity=0.055 Sum_probs=26.6
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccH
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLE 1400 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~r 1400 (2158)
.-.++.||.|+|||..++-.+.+.... +. +++++.|..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~---g~--~v~~~~~~~ 41 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLG---KK--KVAVFKPKI 41 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT---TC--EEEEEEEC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC---CC--eEEEEeecc
Confidence 347899999999998875444444332 33 788998884
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=92.23 E-value=0.34 Score=60.19 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=19.0
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNH 1382 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l 1382 (2158)
..++++.||+|+|||.++ ..+.+.+
T Consensus 45 ~~~vll~G~~G~GKT~la-~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS-KYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CCcEEEECCCCCCHHHHH-HHHHHHH
Confidence 457999999999999887 3444444
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=92.22 E-value=0.37 Score=55.30 Aligned_cols=32 Identities=28% Similarity=0.310 Sum_probs=21.7
Q ss_pred HHHHHHHHHHc--CCCcEEEEccCCCchHHHHHH
Q 000114 499 VQSRVYKSALS--SADNILLCAPTGAGKTNVAVL 530 (2158)
Q Consensus 499 iQ~~~i~~~l~--~~~nvlv~APTGsGKT~~a~l 530 (2158)
...+.+..+.. ...+++++||+|+|||..+..
T Consensus 38 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~ 71 (242)
T 3bos_A 38 ELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHA 71 (242)
T ss_dssp HHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHH
Confidence 33334444443 356899999999999987643
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=91.96 E-value=0.6 Score=57.83 Aligned_cols=20 Identities=55% Similarity=0.650 Sum_probs=16.7
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAVL 530 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l 530 (2158)
..+++++||+|+|||..+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~ 63 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARL 63 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 45799999999999987643
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=91.91 E-value=0.38 Score=55.58 Aligned_cols=39 Identities=26% Similarity=0.372 Sum_probs=26.7
Q ss_pred cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcc
Q 000114 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP 1398 (2158)
..+..++|.||+|+|||..+...+...... ++ +++|+.-
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~--~v~~~~~ 59 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GE--PGIYVAL 59 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHT---TC--CEEEEES
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CC--eEEEEEc
Confidence 346779999999999998875444443332 34 6777754
|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* | Back alignment and structure |
|---|
Probab=91.76 E-value=0.14 Score=73.58 Aligned_cols=74 Identities=23% Similarity=0.310 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhh
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~ 573 (2158)
.++|+-|.+++.. .+.+++|.|+-|||||.+..--+++.+..+.. ..+.-+++++++|++.|.++.+++...
T Consensus 9 ~~~t~eQ~~~i~~---~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~-----~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 9 STWTDDQWNAIVS---TGQDILVAAAAGSGKTAVLVERMIRKITAEEN-----PIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp -CCCHHHHHHHHC---CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSS-----CCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC---CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCC-----CCCccceEEEeccHHHHHHHHHHHHHH
Confidence 3689999999874 35689999999999999988777777765321 112347999999999999999999886
Q ss_pred cc
Q 000114 574 LQ 575 (2158)
Q Consensus 574 ~~ 575 (2158)
+.
T Consensus 81 l~ 82 (1232)
T 3u4q_A 81 LE 82 (1232)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=91.58 E-value=0.55 Score=52.86 Aligned_cols=18 Identities=33% Similarity=0.615 Sum_probs=15.6
Q ss_pred CcEEEEccCCchhHHHHH
Q 000114 1358 DNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~ 1375 (2158)
.++++.||+|+|||..+.
T Consensus 39 ~~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAI 56 (226)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 369999999999998763
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=91.55 E-value=0.45 Score=57.22 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=16.5
Q ss_pred CCcEEEEccCCchhHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~ 1375 (2158)
..++++.||+|+|||.++.
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4479999999999998884
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=91.37 E-value=0.22 Score=56.81 Aligned_cols=39 Identities=18% Similarity=0.090 Sum_probs=28.8
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000114 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ka 561 (2158)
.-++++||+|+|||..++-.+.+....+ .+++++.|.+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g-----------~kVli~~~~~d 51 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYAD-----------VKYLVFKPKID 51 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTT-----------CCEEEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcC-----------CEEEEEEeccC
Confidence 3478899999999988776666654432 37899988763
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=91.22 E-value=0.48 Score=57.32 Aligned_cols=142 Identities=17% Similarity=0.162 Sum_probs=74.5
Q ss_pred cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEE-------EcC
Q 000114 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVE-------LTG 1427 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~-------ltG 1427 (2158)
..++-++|+|++|+|||..+.-.+.....+ +. +++|++-- .-..|+..++..... ++.... +++
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~---g~--~vl~~slE-~s~~~l~~R~~~~~~---~i~~~~l~~~~~~l~~ 136 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDN---DD--VVNLHSLE-MGKKENIKRLIVTAG---SINAQKIKAARRDFAS 136 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTT---TC--EEEEEESS-SCHHHHHHHHHHHHT---TCCHHHHHSCHHHHCS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CC--eEEEEECC-CCHHHHHHHHHHHHc---CCCHHHHhcCCCCCCH
Confidence 346779999999999998775555444333 23 78887633 223333344332221 111100 111
Q ss_pred Ccchh----hhcccCCcEEEe-----CHHHHHHHHhhhhcccccccee--EEEecccccccCCC--C---ChHHHHHHHH
Q 000114 1428 ETAMD----LKLLEKGQIIIS-----TPEKWDALSRRWKQRKYVQQVS--LFIIDELHLIGGQG--G---PVLEVIVSRM 1491 (2158)
Q Consensus 1428 ~~~~~----~~~l~~~~IIV~-----TPe~l~~l~r~~~~~~~l~~v~--llIiDEaH~l~~~~--g---~~~e~~isrl 1491 (2158)
+.... ...+....|.+. |++.+...++++... ..++ +||||-++.+.... . ..+..+...+
T Consensus 137 ~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~---~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~L 213 (315)
T 3bh0_A 137 EDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRK---NPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDL 213 (315)
T ss_dssp SCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHT---SSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHh---cCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHH
Confidence 11000 112223455553 455555555554322 3578 99999999886421 1 2234456666
Q ss_pred HHHHhhcCCCceEEEeccC
Q 000114 1492 RYIASQVENKIRIVALSTS 1510 (2158)
Q Consensus 1492 ~~i~~~~~~~~riV~lSAT 1510 (2158)
+.+++.+ ++.++++|-.
T Consensus 214 k~lAk~~--~i~vi~lsql 230 (315)
T 3bh0_A 214 KKMAREL--DVVVIALSQL 230 (315)
T ss_dssp HHHHHHH--TCEEEEEECC
T ss_pred HHHHHHh--CCeEEEEeec
Confidence 6665543 5677777653
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=91.19 E-value=0.16 Score=63.47 Aligned_cols=85 Identities=19% Similarity=0.205 Sum_probs=52.7
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCH
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTR 592 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~ 592 (2158)
-.++.|+.|||||.... +.+.. .+.++++||++++.++.+.+.+. |. .
T Consensus 163 v~~I~G~aGsGKTt~I~----~~~~~------------~~~lVlTpT~~aa~~l~~kl~~~----~~--------~---- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL----SRVNF------------EEDLILVPGRQAAEMIRRRANAS----GI--------I---- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHH----HHCCT------------TTCEEEESCHHHHHHHHHHHTTT----SC--------C----
T ss_pred EEEEEcCCCCCHHHHHH----HHhcc------------CCeEEEeCCHHHHHHHHHHhhhc----Cc--------c----
Confidence 35899999999997542 22211 14699999999999888777432 11 0
Q ss_pred hhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccc
Q 000114 593 QQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 593 ~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
.....-|.|-+++ +.+... ...-..++|||||+-+++
T Consensus 211 ---~~~~~~V~T~dsf--L~~~~~--~~~~~~d~liiDE~sm~~ 247 (446)
T 3vkw_A 211 ---VATKDNVRTVDSF--LMNYGK--GARCQFKRLFIDEGLMLH 247 (446)
T ss_dssp ---CCCTTTEEEHHHH--HHTTTS--SCCCCCSEEEEETGGGSC
T ss_pred ---ccccceEEEeHHh--hcCCCC--CCCCcCCEEEEeCcccCC
Confidence 1122346777763 222211 111237899999999774
|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* | Back alignment and structure |
|---|
Probab=91.16 E-value=0.18 Score=72.41 Aligned_cols=74 Identities=23% Similarity=0.204 Sum_probs=57.8
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc-CCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~-~~~~~~~v~IaP~raLa~q~~~~~~~~f~~ 1416 (2158)
..+|+-|.+++.. .+.|++|.|..|||||.+..--+++.+.... +-..-+++++++|++.+.++.+++.+.++.
T Consensus 9 ~~~t~eQ~~~i~~---~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~ 83 (1232)
T 3u4q_A 9 STWTDDQWNAIVS---TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEK 83 (1232)
T ss_dssp -CCCHHHHHHHHC---CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC---CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHH
Confidence 3689999999875 3668999999999999988777777766532 011127999999999999999999876653
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=91.08 E-value=0.5 Score=53.94 Aligned_cols=40 Identities=15% Similarity=0.009 Sum_probs=28.1
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccH
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLE 1400 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~r 1400 (2158)
.+.-+++.||+|+|||..++-.+.+.... +. +++++.|..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~---g~--kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA---DV--KYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT---TC--CEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc---CC--EEEEEEecc
Confidence 34457889999999998885555544433 33 788887764
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=91.07 E-value=0.56 Score=54.13 Aligned_cols=51 Identities=24% Similarity=0.292 Sum_probs=32.4
Q ss_pred cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 509 SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 509 ~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
..++.++++||+|+|||..++..+......+ .+++|+.-... ..++.+++.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~-----------~~v~~~~~e~~-~~~~~~~~~ 71 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMG-----------EPGIYVALEEH-PVQVRQNMA 71 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTT-----------CCEEEEESSSC-HHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcC-----------CeEEEEEccCC-HHHHHHHHH
Confidence 4456789999999999988765555544321 25777764332 345544444
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=91.00 E-value=0.32 Score=54.17 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=27.1
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccH
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~k 560 (2158)
-.++++|.|||||..++-.+.+.... +.+++++.|.+
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~-----------g~kV~v~k~~~ 46 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIA-----------KQKIQVFKPEI 46 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT-----------TCCEEEEEEC-
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC-----------CCEEEEEEecc
Confidence 36889999999998876665555433 34799999984
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=90.99 E-value=0.62 Score=55.22 Aligned_cols=20 Identities=45% Similarity=0.672 Sum_probs=16.7
Q ss_pred CCCcEEEEccCCCchHHHHH
Q 000114 510 SADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~ 529 (2158)
...+++++||+|+|||..+-
T Consensus 50 ~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 45679999999999997763
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=90.97 E-value=0.48 Score=58.84 Aligned_cols=20 Identities=35% Similarity=0.295 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAVL 530 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l 530 (2158)
..+++++||+|+|||..+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~ 64 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKY 64 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 34699999999999987643
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=90.97 E-value=1.3 Score=53.74 Aligned_cols=19 Identities=26% Similarity=0.511 Sum_probs=16.1
Q ss_pred CcEEEEccCCCchHHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAVL 530 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l 530 (2158)
.+++++||+|+|||..+-.
T Consensus 38 ~~lll~G~~GtGKT~la~~ 56 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQA 56 (324)
T ss_dssp SSEEEECSSSSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 4799999999999987643
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=90.79 E-value=0.16 Score=56.31 Aligned_cols=37 Identities=16% Similarity=0.084 Sum_probs=26.7
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccH
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~k 560 (2158)
-.+++||.|+|||..++-.+.+.... +.+++++.|..
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~-----------g~~v~~~~~~~ 41 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLG-----------KKKVAVFKPKI 41 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-----------TCEEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-----------CCeEEEEeecc
Confidence 46899999999998876555554432 23789998884
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=90.69 E-value=1.7 Score=52.49 Aligned_cols=36 Identities=22% Similarity=0.338 Sum_probs=24.4
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP 1398 (2158)
.++++.||+|+|||.++. ++...+... +. .++|+..
T Consensus 38 ~~lll~G~~GtGKT~la~-~i~~~~~~~--~~--~~~~i~~ 73 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQ-AAGNEAKKR--GY--RVIYSSA 73 (324)
T ss_dssp SSEEEECSSSSSHHHHHH-HHHHHHHHT--TC--CEEEEEH
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHC--CC--EEEEEEH
Confidence 579999999999998873 444444431 22 5666653
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=90.67 E-value=0.51 Score=56.74 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=16.2
Q ss_pred CcEEEEccCCCchHHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAVL 530 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l 530 (2158)
.+++++||+|+|||.++..
T Consensus 68 ~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4799999999999987743
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=90.55 E-value=0.51 Score=60.06 Aligned_cols=143 Identities=24% Similarity=0.171 Sum_probs=73.9
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchh---
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD--- 1432 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~--- 1432 (2158)
.++-++|+|++|+|||..++-.+...... .+. +++|+..-- -..|+..++..........++ ..|..+..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~--~vl~~slE~-~~~~l~~R~~~~~~~i~~~~l--~~g~l~~~~~~ 271 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK--EGV--GVGIYSLEM-PAAQLTLRMMCSEARIDMNRV--RLGQLTDRDFS 271 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCC--CEEEEESSS-CHHHHHHHHHHHHTTCCTTTC--CGGGCCHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCC--eEEEEECCC-CHHHHHHHHHHHHcCCCHHHH--hCCCCCHHHHH
Confidence 46679999999999998775544444332 122 577765421 122334433222221100000 12322211
Q ss_pred -----hhcccCCcEEEe-----CHHHHHHHHhhhhccccccceeEEEecccccccCC--C---CC---hHHHHHHHHHHH
Q 000114 1433 -----LKLLEKGQIIIS-----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ--G---GP---VLEVIVSRMRYI 1494 (2158)
Q Consensus 1433 -----~~~l~~~~IIV~-----TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~--~---g~---~~e~~isrl~~i 1494 (2158)
...+...++.+- |++.+....+++... ..+++||||.++.+... . .. .+..+...++.+
T Consensus 272 ~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~---~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~l 348 (444)
T 2q6t_A 272 RLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQ---NQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKAL 348 (444)
T ss_dssp HHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHH---SCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHH
Confidence 111233456553 455555555554322 36899999999988643 1 11 233455566666
Q ss_pred HhhcCCCceEEEeccC
Q 000114 1495 ASQVENKIRIVALSTS 1510 (2158)
Q Consensus 1495 ~~~~~~~~riV~lSAT 1510 (2158)
+..+ ++.+|++|-.
T Consensus 349 Ake~--~v~vi~lsql 362 (444)
T 2q6t_A 349 AREL--GIPIIALSQL 362 (444)
T ss_dssp HHHH--TSCEEEEEEC
T ss_pred HHHh--CCeEEEEecC
Confidence 5543 5777887743
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=90.50 E-value=1.2 Score=56.43 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=25.9
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEccc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~ 1399 (2158)
.++++.||+|+|||..+. ++...+....++. +++|+...
T Consensus 131 ~~lll~Gp~G~GKTtLa~-aia~~l~~~~~~~--~v~~v~~~ 169 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDL--RVMYITSE 169 (440)
T ss_dssp CCEEEECSSSSSHHHHHH-HHHHHHHHHCCSS--CEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhCCCC--eEEEeeHH
Confidence 579999999999998873 4444444422233 56666543
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=90.27 E-value=2 Score=48.17 Aligned_cols=29 Identities=28% Similarity=0.493 Sum_probs=20.0
Q ss_pred HHHHHHHHcCC--CcEEEEccCCCchHHHHH
Q 000114 501 SRVYKSALSSA--DNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 501 ~~~i~~~l~~~--~nvlv~APTGsGKT~~a~ 529 (2158)
.+.+...+... .+++++||+|+|||..+.
T Consensus 26 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 26 IQRLKGYVERKNIPHLLFSGPPGTGKTATAI 56 (226)
T ss_dssp HHHHHHHHHTTCCCCEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 33444444433 369999999999997664
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=90.27 E-value=0.47 Score=60.55 Aligned_cols=140 Identities=23% Similarity=0.260 Sum_probs=71.5
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHH-HhcCCCCcEEEE-EcCCcch-h
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI-KFGQGLGMRVVE-LTGETAM-D 1432 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~-~f~~~~g~~v~~-ltG~~~~-~ 1432 (2158)
.++-++|.|++|+|||..+...+...... .+. +++|+..--. ..|+..++.. .++ +.... ..|.... +
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~--~Vl~~s~E~s-~~~l~~r~~~~~~~----~~~~~l~~g~l~~~~ 272 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK--TNE--NVAIFSLEMS-AQQLVMRMLCAEGN----INAQNLRTGKLTPED 272 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSC--CEEEEESSSC-HHHHHHHHHHHHHT----CCHHHHHTSCCCHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCC--cEEEEECCCC-HHHHHHHHHHHHcC----CCHHHHhcCCCCHHH
Confidence 46779999999999998775544444332 122 5777653211 1333333321 111 11000 1122211 1
Q ss_pred h-------hcccCCcEEEe-----CHHHHHHHHhhhhccccccceeEEEecccccccCCC----C--ChHHHHHHHHHHH
Q 000114 1433 L-------KLLEKGQIIIS-----TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG----G--PVLEVIVSRMRYI 1494 (2158)
Q Consensus 1433 ~-------~~l~~~~IIV~-----TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~----g--~~~e~~isrl~~i 1494 (2158)
. ..+...++.+. |++.+....++.... ..+++||||+++.+.... + ..+..+...++.+
T Consensus 273 ~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~---~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~l 349 (454)
T 2r6a_A 273 WGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQE---SGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKAL 349 (454)
T ss_dssp HHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTT---TCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 1 11223455553 445555444443322 368999999999886421 1 1234455556666
Q ss_pred HhhcCCCceEEEecc
Q 000114 1495 ASQVENKIRIVALST 1509 (2158)
Q Consensus 1495 ~~~~~~~~riV~lSA 1509 (2158)
...+ ++.+|++|-
T Consensus 350 Ake~--~i~vi~~sq 362 (454)
T 2r6a_A 350 AREL--EVPVIALSQ 362 (454)
T ss_dssp HHHH--TCCEEEEEC
T ss_pred HHHh--CCeEEEEec
Confidence 5433 567777764
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=90.23 E-value=0.91 Score=58.90 Aligned_cols=42 Identities=12% Similarity=0.105 Sum_probs=25.3
Q ss_pred ccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000114 623 LVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2158)
Q Consensus 623 ~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATl 670 (2158)
.-.+|||||+|.+.......+..+.. .++ ....++|+.+++.
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~----~l~--~~~~~iIli~~~~ 189 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQ----FCR--KTSTPLILICNER 189 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHH----HHH--HCSSCEEEEESCT
T ss_pred CCeEEEEECCCccchhhHHHHHHHHH----HHH--hcCCCEEEEEcCC
Confidence 34699999999987633222333322 222 2456788888774
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.19 E-value=0.61 Score=54.47 Aligned_cols=20 Identities=40% Similarity=0.551 Sum_probs=16.6
Q ss_pred CCCcEEEEccCCCchHHHHH
Q 000114 510 SADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~ 529 (2158)
...+++++||+|+|||..+-
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 34579999999999998764
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=90.03 E-value=0.8 Score=50.95 Aligned_cols=38 Identities=18% Similarity=0.038 Sum_probs=26.8
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccH
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLE 1400 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~r 1400 (2158)
.-.++.+|.|||||..++-.+.+.... +. +++++.|..
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~---g~--kV~v~k~~~ 46 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIA---KQ--KIQVFKPEI 46 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT---TC--CEEEEEEC-
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHC---CC--EEEEEEecc
Confidence 347789999999998876555544333 33 788898884
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=89.96 E-value=2.9 Score=47.36 Aligned_cols=30 Identities=27% Similarity=0.340 Sum_probs=20.1
Q ss_pred HHHHHHHHHcCCC---cEEEEccCCCchHHHHH
Q 000114 500 QSRVYKSALSSAD---NILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 500 Q~~~i~~~l~~~~---nvlv~APTGsGKT~~a~ 529 (2158)
..+.+..++..+. .++++||+|+|||..+.
T Consensus 31 ~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 31 VLTALANGLSLGRIHHAYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHH
Confidence 3334444444333 68999999999997764
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=89.94 E-value=1.3 Score=54.88 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=19.4
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHH
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNH 1382 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l 1382 (2158)
...++++.||+|+|||.++. .+.+.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~-~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVAR-LVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHH-HHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHH-HHHHHH
Confidence 45689999999999998874 333433
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=89.87 E-value=0.18 Score=53.88 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=16.5
Q ss_pred CCCcEEEEccCCchhHHHH
Q 000114 1356 TDDNVLVAAPTGSGKTICS 1374 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a 1374 (2158)
.+..+++.+|+|+|||..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677999999999999776
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=89.85 E-value=1.9 Score=54.60 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=18.1
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAVLTILQQL 536 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l 536 (2158)
.+++++||+|+|||..+. ++.+.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~-aia~~l 154 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQ-SIGNYV 154 (440)
T ss_dssp CCEEEECSSSSSHHHHHH-HHHHHH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHH
Confidence 479999999999998764 333444
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=89.70 E-value=0.39 Score=60.15 Aligned_cols=86 Identities=19% Similarity=0.150 Sum_probs=51.5
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhccc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE 1437 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~ 1437 (2158)
.-.+|.|+.|||||.... +.+. .. +.++++||++++.++.+++. .. |. ..
T Consensus 162 ~v~~I~G~aGsGKTt~I~----~~~~----~~--~~lVlTpT~~aa~~l~~kl~----~~-~~---------------~~ 211 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEIL----SRVN----FE--EDLILVPGRQAAEMIRRRAN----AS-GI---------------IV 211 (446)
T ss_dssp EEEEEEECTTSCHHHHHH----HHCC----TT--TCEEEESCHHHHHHHHHHHT----TT-SC---------------CC
T ss_pred cEEEEEcCCCCCHHHHHH----HHhc----cC--CeEEEeCCHHHHHHHHHHhh----hc-Cc---------------cc
Confidence 346789999999997652 2121 12 56999999999977665543 11 11 01
Q ss_pred CCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccccc
Q 000114 1438 KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1438 ~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
..+.-|.|-+++. .+. .....-..+++||||+-++.
T Consensus 212 ~~~~~V~T~dsfL---~~~-~~~~~~~~d~liiDE~sm~~ 247 (446)
T 3vkw_A 212 ATKDNVRTVDSFL---MNY-GKGARCQFKRLFIDEGLMLH 247 (446)
T ss_dssp CCTTTEEEHHHHH---HTT-TSSCCCCCSEEEEETGGGSC
T ss_pred cccceEEEeHHhh---cCC-CCCCCCcCCEEEEeCcccCC
Confidence 1233467766543 221 11111247899999999773
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=89.59 E-value=0.66 Score=51.44 Aligned_cols=36 Identities=14% Similarity=0.151 Sum_probs=27.2
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
=.+++||.|||||.-.+-.+-+....+ .+++|+.|.
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~-----------~kvl~~kp~ 57 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQ-----------YKCLVIKYA 57 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTT-----------CCEEEEEET
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcC-----------CeEEEEccc
Confidence 368899999999977766666555432 379999887
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=89.55 E-value=1.5 Score=49.88 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=27.2
Q ss_pred cee--EEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCC
Q 000114 1464 QVS--LFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (2158)
Q Consensus 1464 ~v~--llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl 1511 (2158)
+.+ ++|+||...+..........++..++.+... .+..+|+.|-..
T Consensus 121 ~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~--~~~~vi~~~h~~ 168 (235)
T 2w0m_A 121 GYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNK--WNFTIYATSQYA 168 (235)
T ss_dssp CSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHH--TTEEEEEEEC--
T ss_pred CCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHh--CCCeEEEEeccC
Confidence 567 9999999977532222345566666665443 255666666554
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=89.47 E-value=0.81 Score=54.21 Aligned_cols=21 Identities=29% Similarity=0.637 Sum_probs=17.6
Q ss_pred cCCCcEEEEccCCchhHHHHH
Q 000114 1355 NTDDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~ 1375 (2158)
....++++.||+|+|||.++.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHH
Confidence 345679999999999998773
|
| >3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.40 E-value=0.21 Score=58.78 Aligned_cols=78 Identities=18% Similarity=0.102 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhHCCCccccccCCccccChHHHHHHHhccCcccHHHHHhhcCCCCCHHHHHHHhhCCccCCCCcCChhH
Q 000114 969 ADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYISHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDE 1048 (2158)
Q Consensus 969 ~~li~~a~~~L~~~~~i~~~~~~~~~~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~~~~~l~~~s~~~ef~~i~~r~~e 1048 (2158)
.+.+..|+..|...|+|+.+ ..+|++|+.++.++++|...+++..+....+. .+++.|.|+-++ .++.+|+.+
T Consensus 17 ~~~l~~A~~~L~~LgAld~~-----g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~-~~~l~iaA~Ls~-~~~f~~p~~ 89 (270)
T 3i4u_A 17 METLITAMEQLYTLGALDDE-----GLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCS-EEMLTIVSMLSV-QNVFYRPKD 89 (270)
T ss_dssp HHHHHHHHHHHHHHTSBCTT-----SCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCH-HHHHHHHHHHTS-SCCBCCCGG
T ss_pred HHHHHHHHHHHHHcCCcCCC-----CCccHHHHHHHhCCCCHHHHHHHHHhhhcCCH-HHHHHHHHHHCC-CccccCCch
Confidence 35788999999999999633 37899999999999999999999887665554 566666554433 577788776
Q ss_pred HHHHH
Q 000114 1049 KMELA 1053 (2158)
Q Consensus 1049 ~~~l~ 1053 (2158)
+.+..
T Consensus 90 ~~~~a 94 (270)
T 3i4u_A 90 KQALA 94 (270)
T ss_dssp GHHHH
T ss_pred hHHHH
Confidence 65543
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=89.37 E-value=0.61 Score=53.42 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=17.2
Q ss_pred CCCcEEEEccCCchhHHHHH
Q 000114 1356 TDDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~ 1375 (2158)
...++++.||+|+|||..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35789999999999998773
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=89.35 E-value=2.6 Score=45.71 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=16.8
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAVL 530 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l 530 (2158)
..+++++||+|+|||..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~ 62 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEG 62 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 45799999999999987643
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.33 E-value=1.6 Score=54.36 Aligned_cols=19 Identities=47% Similarity=0.695 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCchHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~ 529 (2158)
..++|++||+|+|||.++-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3579999999999998764
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.97 E-value=1.2 Score=54.02 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=26.5
Q ss_pred cceEEeecccccccCCh----hhHHHHHHHHHHHHhhcc-ccccEEEEccc
Q 000114 624 VKLLIIDEIHLLHDNRG----PVLESIVARTVRQIETTK-EHIRLVGLSAT 669 (2158)
Q Consensus 624 v~lIIiDEaH~l~d~rg----~~le~iv~r~~~~~~~~~-~~~riv~lSAT 669 (2158)
..+|+|||+|.+...++ .....++..++..+.... ...+++.+.||
T Consensus 106 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~at 156 (322)
T 1xwi_A 106 PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGAT 156 (322)
T ss_dssp SEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEE
T ss_pred CcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEec
Confidence 46999999999854332 234445555555444332 23455666566
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.89 E-value=0.69 Score=57.71 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=17.2
Q ss_pred CCcEEEEccCCchhHHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSEF 1376 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l 1376 (2158)
..++|+.||+|+|||.++..
T Consensus 148 ~~~vLL~GppGtGKT~la~a 167 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKA 167 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 46899999999999988743
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=88.83 E-value=0.8 Score=55.52 Aligned_cols=19 Identities=26% Similarity=0.620 Sum_probs=16.5
Q ss_pred CCcEEEEccCCchhHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~ 1375 (2158)
..++++.||+|+|||.++.
T Consensus 51 ~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCEEEEECSSSSCHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4579999999999998873
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=88.78 E-value=0.99 Score=55.01 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=24.4
Q ss_pred CHHHHHHHHHH---HcCCC---cEEEEccCCCchHHHHHHHH
Q 000114 497 NRVQSRVYKSA---LSSAD---NILLCAPTGAGKTNVAVLTI 532 (2158)
Q Consensus 497 ~~iQ~~~i~~~---l~~~~---nvlv~APTGsGKT~~a~l~i 532 (2158)
.|+|.+++..+ +.+++ .+|++||.|+|||.++...+
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la 45 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALS 45 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHH
Confidence 46676666543 33332 48999999999998775433
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=88.63 E-value=0.99 Score=54.65 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=18.8
Q ss_pred HHHHHHHhcCC---CcEEEEccCCchhHHHHH
Q 000114 1347 TQVFTVLYNTD---DNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1347 ~q~~~~l~~~~---~nvli~ApTGSGKTl~a~ 1375 (2158)
.+.+..++..+ ..+++++|+|+|||.++.
T Consensus 35 ~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 35 KETFKSITSKGKIPHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp HHHHHHHHHTTCCCSEEEECSSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHH
Confidence 34444444433 345778889999998873
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.60 E-value=0.89 Score=56.24 Aligned_cols=45 Identities=16% Similarity=0.273 Sum_probs=29.2
Q ss_pred ceEEeecccccccCC-------hhhHHHHHHHHHHHHhhccccccEEEEccc
Q 000114 625 KLLIIDEIHLLHDNR-------GPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 625 ~lIIiDEaH~l~d~r-------g~~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (2158)
.+|.|||+|.+...| .......+..++..+......-.++.+-||
T Consensus 243 ~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaAT 294 (405)
T 4b4t_J 243 SIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMAT 294 (405)
T ss_dssp EEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEE
T ss_pred ceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEecc
Confidence 578899999886432 123455666666666655555666666677
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=88.51 E-value=1.6 Score=56.06 Aligned_cols=21 Identities=29% Similarity=0.616 Sum_probs=17.7
Q ss_pred cCCCcEEEEccCCchhHHHHH
Q 000114 1355 NTDDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~ 1375 (2158)
....++++.||+|+|||+++-
T Consensus 236 ~~~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHHH
Confidence 345689999999999998873
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=88.37 E-value=4.1 Score=44.08 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=16.6
Q ss_pred CCcEEEEccCCchhHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~ 1375 (2158)
..++++.||+|+|||.++.
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 5689999999999998774
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=88.37 E-value=0.88 Score=53.62 Aligned_cols=18 Identities=39% Similarity=0.562 Sum_probs=15.8
Q ss_pred CcEEEEccCCCchHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~ 529 (2158)
.+++++||+|+|||.++.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 479999999999998764
|
| >2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A* | Back alignment and structure |
|---|
Probab=87.96 E-value=0.34 Score=43.41 Aligned_cols=54 Identities=20% Similarity=0.232 Sum_probs=46.2
Q ss_pred CCCccccCCCCHHHHHHHHhCCCCchhhccCChHHhhhhhcCchh-HHHHHHHHhc
Q 000114 1141 QTPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKM-GRTLHKFVHQ 1195 (2158)
Q Consensus 1141 ~~~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 1195 (2158)
.+.|..+||||+...++|-++==+++.+...+.+||.++++ ++. ++.|++++|.
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~Fgs~~~i~~As~eeL~~vig-~~~~A~~I~~~l~~ 57 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHT 57 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHHCSSHHHHHTCCHHHHHHHHS-CHHHHHHHHHHHHC
T ss_pred HhHHHcCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHcC-chHHHHHHHHHHhc
Confidence 45688999999999999877544788999999999999988 566 9999999974
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=87.79 E-value=0.82 Score=52.00 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=28.9
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ka 561 (2158)
-.+++||-|||||..++-.+.+.... +.+++++.|.+.
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~-----------g~kvli~kp~~D 58 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIA-----------QYKCLVIKYAKD 58 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTT-----------TCCEEEEEETTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC-----------CCeEEEEeecCC
Confidence 35788999999998877776666543 347999999874
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=87.77 E-value=1.7 Score=54.60 Aligned_cols=131 Identities=15% Similarity=0.154 Sum_probs=67.9
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEc--ccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA--PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~Ia--P~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~ 1435 (2158)
..+++++|+|+|||..+.--+ ..+.. .++ +++++. +.+.-+.++...|.... |+.+.. ....
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA-~~l~~--~G~--kVllv~~D~~r~~a~eqL~~~~~~~----gv~~~~--~~~~----- 161 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLA-YFYKK--RGY--KVGLVAADVYRPAAYDQLLQLGNQI----GVQVYG--EPNN----- 161 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHH-HHHHH--TTC--CEEEEEECCSCHHHHHHHHHHHHTT----TCCEEC--CTTC-----
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHH--cCC--eEEEEecCccchhHHHHHHHHHHhc----CCceee--cccc-----
Confidence 357888999999998763322 23333 234 555444 56665666666665432 333321 1111
Q ss_pred ccCCcEEEeCHHHHH-HHHhhhhccccccceeEEEeccccccc--CCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCC
Q 000114 1436 LEKGQIIISTPEKWD-ALSRRWKQRKYVQQVSLFIIDELHLIG--GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2158)
Q Consensus 1436 l~~~~IIV~TPe~l~-~l~r~~~~~~~l~~v~llIiDEaH~l~--~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~ 1512 (2158)
..|..+. ..+.. ...+..+++|||++-++. ... ..+..+..+.....+..-++.++|+..
T Consensus 162 --------~dp~~i~~~al~~----a~~~~~DvvIIDTaGr~~~~~d~-----~lm~el~~i~~~~~pd~vlLVlDa~~g 224 (433)
T 3kl4_A 162 --------QNPIEIAKKGVDI----FVKNKMDIIIVDTAGRHGYGEET-----KLLEEMKEMYDVLKPDDVILVIDASIG 224 (433)
T ss_dssp --------SCHHHHHHHHHHH----TTTTTCSEEEEEECCCSSSCCTT-----HHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred --------CCHHHHHHHHHHH----HHhcCCCEEEEECCCCccccCCH-----HHHHHHHHHHHhhCCcceEEEEeCccc
Confidence 1133221 11111 112578999999997654 221 244445544444455666777787754
Q ss_pred C-hHHHHHHh
Q 000114 1513 N-AKDLGEWI 1521 (2158)
Q Consensus 1513 n-~~dl~~wl 1521 (2158)
. +..++..+
T Consensus 225 q~a~~~a~~f 234 (433)
T 3kl4_A 225 QKAYDLASRF 234 (433)
T ss_dssp GGGHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 2 33444433
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=87.59 E-value=1.2 Score=57.27 Aligned_cols=45 Identities=24% Similarity=0.456 Sum_probs=31.0
Q ss_pred ceEEeecccccccCC----hhhHHHHHHHHHHHHhhccccccEEEEccc
Q 000114 625 KLLIIDEIHLLHDNR----GPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 625 ~lIIiDEaH~l~d~r----g~~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (2158)
.+|+|||+|.+...+ +..-..+...+++.+........++.+.||
T Consensus 299 ~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaT 347 (489)
T 3hu3_A 299 AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (489)
T ss_dssp EEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEE
T ss_pred cEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEec
Confidence 689999999886533 444455666666666655556667777777
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=87.35 E-value=3 Score=50.71 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHh---cCC---CcEEEEccCCchhHHHHHHHHHHHHH
Q 000114 1342 FNPIQTQVFTVLY---NTD---DNVLVAAPTGSGKTICSEFAILRNHQ 1383 (2158)
Q Consensus 1342 ~~~iQ~q~~~~l~---~~~---~nvli~ApTGSGKTl~a~l~il~~l~ 1383 (2158)
+.|+|.+++..+. .++ ..+++.||.|+|||.++. .+.+.+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~-~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY-ALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH-HHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH-HHHHHHh
Confidence 3577877776653 232 248999999999998884 3444443
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=87.34 E-value=0.84 Score=59.96 Aligned_cols=117 Identities=20% Similarity=0.304 Sum_probs=75.4
Q ss_pred CCCHHHHHHHHHHHcC-CCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhh
Q 000114 495 QLNRVQSRVYKSALSS-ADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~-~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~ 573 (2158)
.+|.-|.+++..++.- ....++.|+-|.|||.+.-+.+-... . .+++.+|+++-+....+ |...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~--~------------~~~vtAP~~~a~~~l~~-~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIA--G------------RAIVTAPAKASTDVLAQ-FAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSS--S------------CEEEECSSCCSCHHHHH-HHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHH--h------------CcEEECCCHHHHHHHHH-HhhC
Confidence 6899999999987763 23579999999999966655554331 1 36999999986664333 2210
Q ss_pred cccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHH
Q 000114 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQ 653 (2158)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~ 653 (2158)
.|-+..|+. +.. .....+++|||||=.+. -+.++.++.
T Consensus 240 -------------------------~i~~~~Pd~---~~~------~~~~~dlliVDEAAaIp---~pll~~ll~----- 277 (671)
T 2zpa_A 240 -------------------------KFRFIAPDA---LLA------SDEQADWLVVDEAAAIP---APLLHQLVS----- 277 (671)
T ss_dssp -------------------------GCCBCCHHH---HHH------SCCCCSEEEEETGGGSC---HHHHHHHHT-----
T ss_pred -------------------------CeEEeCchh---hhh------CcccCCEEEEEchhcCC---HHHHHHHHh-----
Confidence 133445653 211 12347999999998874 233333221
Q ss_pred HhhccccccEEEEccccCChH
Q 000114 654 IETTKEHIRLVGLSATLPNYE 674 (2158)
Q Consensus 654 ~~~~~~~~riv~lSATlpn~~ 674 (2158)
....|+||.|+..|+
T Consensus 278 ------~~~~v~~~tTv~GYE 292 (671)
T 2zpa_A 278 ------RFPRTLLTTTVQGYE 292 (671)
T ss_dssp ------TSSEEEEEEEBSSTT
T ss_pred ------hCCeEEEEecCCcCC
Confidence 334588899988776
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=87.02 E-value=2.3 Score=47.92 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=26.8
Q ss_pred cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHH
Q 000114 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEA 1401 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~ra 1401 (2158)
-.++.+|-|||||..++-.+.+.... +. +++++.|.+.
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~---g~--kVli~k~~~d 67 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFA---KQ--HAIVFKPCID 67 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT---TC--CEEEEECC--
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC---CC--EEEEEEeccC
Confidence 35688999999998886665555443 33 7899999864
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=86.91 E-value=1 Score=57.14 Aligned_cols=142 Identities=18% Similarity=0.179 Sum_probs=76.0
Q ss_pred cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEE-EcCC--cch
Q 000114 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVE-LTGE--TAM 1431 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~-ltG~--~~~ 1431 (2158)
..++-++|+|++|+|||..++-.+.....+ +. +++|++-- .-..|+..++..... |+.... ..|. ...
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~--~vl~fSlE-ms~~ql~~R~~~~~~---~i~~~~l~~g~~~l~~ 265 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDN---DD--VVNLHSLE-MGKKENIKRLIVTAG---SINAQKIKAARRDFAS 265 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TC--EEEEECSS-SCTTHHHHHHHHHHS---CCCHHHHHHTGGGTCC
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CC--EEEEEECC-CCHHHHHHHHHHHHc---CCCHHHHhcccCCCCH
Confidence 346779999999999998875555544433 33 78887643 222333333332221 111100 1121 110
Q ss_pred -h-------hhcccCCcEEE-----eCHHHHHHHHhhhhcccccccee--EEEecccccccCCC--CC---hHHHHHHHH
Q 000114 1432 -D-------LKLLEKGQIII-----STPEKWDALSRRWKQRKYVQQVS--LFIIDELHLIGGQG--GP---VLEVIVSRM 1491 (2158)
Q Consensus 1432 -~-------~~~l~~~~IIV-----~TPe~l~~l~r~~~~~~~l~~v~--llIiDEaH~l~~~~--g~---~~e~~isrl 1491 (2158)
+ ...+...++.| .|++.+....+++... ..++ +||||=++.+.... .. .+..+...+
T Consensus 266 ~~~~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~---~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~L 342 (444)
T 3bgw_A 266 EDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRK---NPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDL 342 (444)
T ss_dssp SCHHHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHH---SCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHH---hCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHH
Confidence 0 11222445655 2556665555554332 2578 99999999886432 11 233455566
Q ss_pred HHHHhhcCCCceEEEeccC
Q 000114 1492 RYIASQVENKIRIVALSTS 1510 (2158)
Q Consensus 1492 ~~i~~~~~~~~riV~lSAT 1510 (2158)
+.+++.+ ++.+|++|-.
T Consensus 343 k~lAke~--~v~vi~lsql 359 (444)
T 3bgw_A 343 KKMAREL--DVVVIALSQL 359 (444)
T ss_dssp HHHHHHH--TCEEEEEEEC
T ss_pred HHHHHHh--CCeEEEEecC
Confidence 6665543 6778887764
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=86.87 E-value=2.1 Score=51.72 Aligned_cols=31 Identities=35% Similarity=0.447 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCC---cEEEEccCCCchHHHHH
Q 000114 499 VQSRVYKSALSSAD---NILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 499 iQ~~~i~~~l~~~~---nvlv~APTGsGKT~~a~ 529 (2158)
...+.+..++..+. .+|+.+|+|+|||.++.
T Consensus 33 ~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 33 FDKETFKSITSKGKIPHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHH
Confidence 33445555555432 35777889999997763
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
Probab=86.76 E-value=2.4 Score=50.64 Aligned_cols=94 Identities=11% Similarity=0.059 Sum_probs=53.7
Q ss_pred CCCceEEEechhhhhccC-----CCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCC--CCccEEEEEcCCCc
Q 000114 818 DGHVQVLVSTATLAWGVN-----LPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQY--DSYGEGIIITGHSE 890 (2158)
Q Consensus 818 ~g~i~VLVaT~tla~GVd-----lP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~--d~~G~~iil~~~~~ 890 (2158)
+....|.+.|+...-|+| +-+.++||-++.-|||.. +.+|.+-||-|.|. .+.-.+|.+++...
T Consensus 168 ~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~~DsdwNp~~---------d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 168 DFSCTVHLFSSEGINFTKYPIKSKARFDMLICLDTTVDTSQ---------KDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEECSTTCCTTS---------HHHHHHHCCC---------CCEEEEEETTS
T ss_pred cCCceEEEEECCCCCCcCcccccCCCCCEEEEECCCCCCCC---------hHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 445566555665556676 567788888777777764 56787777777632 45567888888777
Q ss_pred HHHHHHhhcCCCcccchhhHhhHHHHHHHHHh
Q 000114 891 LRYYLSLMNQQLPIESQFVSKLADQLNAEIVL 922 (2158)
Q Consensus 891 ~~~y~~ll~~~~pieS~l~~~l~d~lnaeI~~ 922 (2158)
.+...-.+... .++.-...+...+++-+++
T Consensus 239 iEh~~l~~~~~--~~~~~~~~l~k~i~a~v~l 268 (328)
T 3hgt_A 239 IDHCRLFFGKK--FDKNSREYLENVTAAMVIL 268 (328)
T ss_dssp HHHHHHHHHHH--TCTTCHHHHHHHHHHHHHG
T ss_pred HHHHHHHccCC--CCcchHHHHHHHHHHHHHH
Confidence 66544333221 1223334555666664443
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=86.69 E-value=1.3 Score=54.78 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=23.0
Q ss_pred cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEc
Q 000114 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~Ia 1397 (2158)
+++|.||+|+|||..+. .+.+.+.. ..+..++++.
T Consensus 46 ~~li~G~~G~GKTtl~~-~l~~~~~~---~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR-KLWELYKD---KTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHH-HHHHHHTT---SCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHhh---hcCeeEEEEe
Confidence 79999999999998873 34444332 1022666664
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=86.62 E-value=2.9 Score=47.34 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=15.1
Q ss_pred cEEEEccCCchhHHHHH
Q 000114 1359 NVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~ 1375 (2158)
.+++.||+|+|||..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999998763
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.61 E-value=2.6 Score=52.14 Aligned_cols=18 Identities=33% Similarity=0.685 Sum_probs=16.1
Q ss_pred CCcEEEEccCCchhHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICS 1374 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a 1374 (2158)
...+|+.||+|+|||+.+
T Consensus 182 prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCCEEEESCSSSSHHHHH
T ss_pred CCceEEeCCCCCCHHHHH
Confidence 456999999999999887
|
| >2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.51 E-value=1.3 Score=41.80 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHc
Q 000114 1982 LPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCN 2034 (2158)
Q Consensus 1982 LP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~ 2034 (2158)
.|++++..++.|.++| |.|+.|++..++.+..++++++-+...++.+.+.
T Consensus 9 ~p~Lse~~~~~L~~~~---I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l~ 58 (83)
T 2kz3_A 9 CPGLTEEMIQLLRSHR---IKTVVDLVSADLEEVAQKCGLSYKALVALRRVLL 58 (83)
T ss_dssp STTCCHHHHHHHHHTT---CCCHHHHTTSCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHCC---CCCHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4999999999999999 9999999999999999999998877666555443
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=86.45 E-value=1.2 Score=53.78 Aligned_cols=17 Identities=41% Similarity=0.663 Sum_probs=15.4
Q ss_pred cEEEEccCCchhHHHHH
Q 000114 1359 NVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~ 1375 (2158)
++++.||+|+|||.++.
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 69999999999998873
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=86.43 E-value=1.1 Score=55.12 Aligned_cols=90 Identities=13% Similarity=0.241 Sum_probs=50.4
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhc
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~ 1435 (2158)
.+..++|.+|+|+|||..++-.+...... ++ +++|+..-..+- +.+ .++++-. .
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~---g~--~vlyi~~E~s~~-~~~---a~~~g~d-------------~---- 126 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA---GG--TCAFIDAEHALD-PVY---ARALGVN-------------T---- 126 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TC--CEEEEESSCCCC-HHH---HHHTTCC-------------G----
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC---CC--eEEEEECCCChh-HHH---HHHcCCC-------------H----
Confidence 45679999999999998875544443322 33 678876543222 111 1233210 0
Q ss_pred ccCCcEEE---eCHHHHHHHHhhhhccccccceeEEEeccccccc
Q 000114 1436 LEKGQIII---STPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1436 l~~~~IIV---~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
.+++| .|.+.+...++.... -..+++||||.+..+.
T Consensus 127 ---~~l~i~~~~~~e~~l~~l~~l~~---~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 127 ---DELLVSQPDNGEQALEIMELLVR---SGAIDVVVVDSVAALT 165 (366)
T ss_dssp ---GGCEEECCSSHHHHHHHHHHHHT---TTCCSEEEEECTTTCC
T ss_pred ---HHceeecCCcHHHHHHHHHHHHh---cCCCCEEEEeChHHhc
Confidence 01222 244555444443221 2468999999999875
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=86.32 E-value=1.3 Score=49.17 Aligned_cols=38 Identities=16% Similarity=0.049 Sum_probs=27.3
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEccc
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~ 1399 (2158)
..-.++.||.|||||.-.+-++-+.... +. +++|+.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---~~--kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA---QY--KCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---TC--CEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc---CC--eEEEEccc
Confidence 3457889999999997665565555443 33 78898887
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=86.28 E-value=0.82 Score=55.45 Aligned_cols=18 Identities=44% Similarity=0.744 Sum_probs=15.8
Q ss_pred CcEEEEccCCCchHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~ 529 (2158)
.++|++||+|+|||.++-
T Consensus 52 ~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CEEEEECSSSSCHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 469999999999998764
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.22 E-value=0.7 Score=56.92 Aligned_cols=20 Identities=30% Similarity=0.647 Sum_probs=17.2
Q ss_pred CCCcEEEEccCCchhHHHHH
Q 000114 1356 TDDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~ 1375 (2158)
...++++.||+|+|||.++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35689999999999998874
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=86.15 E-value=1.9 Score=53.35 Aligned_cols=17 Identities=29% Similarity=0.286 Sum_probs=15.1
Q ss_pred cEEEEccCCCchHHHHH
Q 000114 513 NILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~ 529 (2158)
+++++||+|+|||..+-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 69999999999998764
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=86.12 E-value=2.7 Score=54.38 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=16.1
Q ss_pred CcEEEEccCCchhHHHHH
Q 000114 1358 DNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~ 1375 (2158)
..++++||+|+|||.++.
T Consensus 78 ~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 579999999999998874
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.98 E-value=1.1 Score=56.41 Aligned_cols=46 Identities=13% Similarity=0.178 Sum_probs=26.7
Q ss_pred cceEEeecccccccCC-------hhhHHHHHHHHHHHHhhccccccEEEEccc
Q 000114 624 VKLLIIDEIHLLHDNR-------GPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 624 v~lIIiDEaH~l~d~r-------g~~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (2158)
-.+|.|||+|.+...| .......+..++..+......-+++.+-||
T Consensus 275 P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~AT 327 (437)
T 4b4t_L 275 PCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMAT 327 (437)
T ss_dssp SEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEE
T ss_pred CceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEec
Confidence 3688999999886432 223444555555555544444444555566
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=85.85 E-value=3.6 Score=50.56 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=14.8
Q ss_pred cEEEEccCCCchHHHHH
Q 000114 513 NILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~ 529 (2158)
.++++||+|+|||..+.
T Consensus 40 ~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47999999999998764
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=85.58 E-value=0.68 Score=56.83 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=27.4
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcc
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP 1398 (2158)
.+..++|.+|+|+|||..++-.+...... ++ +++|+..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~--~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GK--TCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---TC--CEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC---CC--eEEEEeC
Confidence 45679999999999999885555444332 33 6888875
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=85.48 E-value=1.8 Score=55.22 Aligned_cols=46 Identities=20% Similarity=0.310 Sum_probs=25.8
Q ss_pred cceEEeecccccccCChh-------hHHHHHHHHHHHHhhccccccEEEEccc
Q 000114 624 VKLLIIDEIHLLHDNRGP-------VLESIVARTVRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 624 v~lIIiDEaH~l~d~rg~-------~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (2158)
..+|+|||+|.+...++. ..+..+..++..+........++.+.||
T Consensus 109 p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaT 161 (476)
T 2ce7_A 109 PCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAAT 161 (476)
T ss_dssp SEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEE
T ss_pred CCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEec
Confidence 468999999998664432 2233445555444433334456666666
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=85.47 E-value=0.82 Score=53.88 Aligned_cols=19 Identities=37% Similarity=0.410 Sum_probs=16.5
Q ss_pred CCcEEEEccCCchhHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~ 1375 (2158)
..++++.||+|+|||.++.
T Consensus 64 ~~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3579999999999998874
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=85.46 E-value=2 Score=52.49 Aligned_cols=26 Identities=38% Similarity=0.650 Sum_probs=18.8
Q ss_pred HHHHHcCC--CcEEEEccCCCchHHHHH
Q 000114 504 YKSALSSA--DNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 504 i~~~l~~~--~nvlv~APTGsGKT~~a~ 529 (2158)
+..++..+ .+++++||+|+|||..+.
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 33344443 469999999999998764
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.42 E-value=1.1 Score=56.03 Aligned_cols=46 Identities=17% Similarity=0.304 Sum_probs=28.3
Q ss_pred cceEEeecccccccCC-------hhhHHHHHHHHHHHHhhccccccEEEEccc
Q 000114 624 VKLLIIDEIHLLHDNR-------GPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 624 v~lIIiDEaH~l~d~r-------g~~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (2158)
-.+|+|||+|.+...| ......++..++..+........++.+-||
T Consensus 266 P~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aT 318 (428)
T 4b4t_K 266 PSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMAT 318 (428)
T ss_dssp SEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEE
T ss_pred CCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEec
Confidence 3688999999875432 223455666666665554445556666666
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=85.30 E-value=1.3 Score=56.58 Aligned_cols=41 Identities=20% Similarity=0.218 Sum_probs=27.8
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
+..++-++|.||+|+|||..++..+....... +.+++|+..
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~----------g~~Vl~~s~ 240 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKT----------NENVAIFSL 240 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS----------SCCEEEEES
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC----------CCcEEEEEC
Confidence 34456789999999999987766555554332 125777764
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=85.21 E-value=1.8 Score=48.84 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=24.6
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcc
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP 1398 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP 1398 (2158)
.+.-+++.||+|+|||..+...+. .. ++ +++|+.-
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~---~~--~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LS---GK--KVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HH---CS--EEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---Hc---CC--cEEEEEC
Confidence 356689999999999987754443 22 34 6777753
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=85.16 E-value=2.8 Score=50.36 Aligned_cols=30 Identities=27% Similarity=0.506 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCCC--cEEEEccCCCchHHHHH
Q 000114 500 QSRVYKSALSSAD--NILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 500 Q~~~i~~~l~~~~--nvlv~APTGsGKT~~a~ 529 (2158)
..+.+..++.++. +++++||+|+|||.++.
T Consensus 33 ~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 33 IVKRLKHYVKTGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp HHHHHHHHHHHTCCCEEEEESCTTSSHHHHHH
T ss_pred HHHHHHHHHHcCCCCeEEEECcCCCCHHHHHH
Confidence 3334444444433 69999999999998764
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.11 E-value=1.9 Score=50.24 Aligned_cols=20 Identities=30% Similarity=0.596 Sum_probs=17.0
Q ss_pred CCCcEEEEccCCchhHHHHH
Q 000114 1356 TDDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~ 1375 (2158)
...++++.||+|+|||.++.
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 45679999999999998874
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=85.10 E-value=1.9 Score=54.13 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=60.5
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc--ccHHHHHHHHHHHHhhcccCCcEEEEEeCCCcc
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~ia--P~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~ 590 (2158)
.+++++|+|+|||.++...+.. +... +.+++++. +.+.-+.++...+... .|+.+. ......
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~-l~~~----------G~kVllv~~D~~r~~a~eqL~~~~~~---~gv~~~--~~~~~~ 162 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYF-YKKR----------GYKVGLVAADVYRPAAYDQLLQLGNQ---IGVQVY--GEPNNQ 162 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHH-HHHT----------TCCEEEEEECCSCHHHHHHHHHHHHT---TTCCEE--CCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHHc----------CCeEEEEecCccchhHHHHHHHHHHh---cCCcee--eccccC
Confidence 4788999999999876443332 2221 22565554 5565555555555443 344332 111111
Q ss_pred CHhhhccccEEEcchhHH--HHHHhccCCCccccccceEEeecccccc--cCChhhHHHHHHHHHHHHhhccccccEEEE
Q 000114 591 TRQQIEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLH--DNRGPVLESIVARTVRQIETTKEHIRLVGL 666 (2158)
Q Consensus 591 ~~~~~~~~~IiV~TPekl--d~l~r~~~~~~~l~~v~lIIiDEaH~l~--d~rg~~le~iv~r~~~~~~~~~~~~riv~l 666 (2158)
.|..+ +.+.. . .....++||||++-+++ .... .+.. +..+ .....+..-++.+
T Consensus 163 -------------dp~~i~~~al~~-a----~~~~~DvvIIDTaGr~~~~~d~~-lm~e-l~~i---~~~~~pd~vlLVl 219 (433)
T 3kl4_A 163 -------------NPIEIAKKGVDI-F----VKNKMDIIIVDTAGRHGYGEETK-LLEE-MKEM---YDVLKPDDVILVI 219 (433)
T ss_dssp -------------CHHHHHHHHHHH-T----TTTTCSEEEEEECCCSSSCCTTH-HHHH-HHHH---HHHHCCSEEEEEE
T ss_pred -------------CHHHHHHHHHHH-H----HhcCCCEEEEECCCCccccCCHH-HHHH-HHHH---HHhhCCcceEEEE
Confidence 12221 11211 1 12457999999998765 3221 1221 2222 2223445566778
Q ss_pred ccccC
Q 000114 667 SATLP 671 (2158)
Q Consensus 667 SATlp 671 (2158)
+|+..
T Consensus 220 Da~~g 224 (433)
T 3kl4_A 220 DASIG 224 (433)
T ss_dssp EGGGG
T ss_pred eCccc
Confidence 88754
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=85.06 E-value=1.4 Score=53.56 Aligned_cols=144 Identities=13% Similarity=0.166 Sum_probs=72.8
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCC
Q 000114 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGD 587 (2158)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd 587 (2158)
+..++-+++.|++|+|||..++-.+...... +.+++|++.--. ..|+..++.......+..- ...|.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~-----------g~~Vl~fSlEms-~~ql~~Rlls~~~~v~~~~-l~~g~ 109 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALND-----------DRGVAVFSLEMS-AEQLALRALSDLTSINMHD-LESGR 109 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-----------TCEEEEEESSSC-HHHHHHHHHHHHHCCCHHH-HHHTC
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-----------CCeEEEEeCCCC-HHHHHHHHHHHhhCCCHHH-HhcCC
Confidence 3445678999999999998776555554432 236787764322 3455544433222111100 01122
Q ss_pred CccCHh--------hhccccEEE-cch----hHHHHHHhccCCCcccc-ccceEEeeccccccc-----CChhhHHHHHH
Q 000114 588 QTLTRQ--------QIEETQIIV-TTP----EKWDIITRKSGDRTYTQ-LVKLLIIDEIHLLHD-----NRGPVLESIVA 648 (2158)
Q Consensus 588 ~~~~~~--------~~~~~~IiV-~TP----ekld~l~r~~~~~~~l~-~v~lIIiDEaH~l~d-----~rg~~le~iv~ 648 (2158)
.+.... ......+.| .+| +.+....++.. .-. .+++||||-++++.. .+...+..+..
T Consensus 110 Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~---~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr 186 (338)
T 4a1f_A 110 LDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLK---SQHKELGIAFIDYLQLMSGSKATKERHEQIAEISR 186 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHH---HHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHH---HhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHH
Confidence 211110 112344555 344 33322222211 112 589999999998854 13334555555
Q ss_pred HHHHHHhhccccccEEEEccc
Q 000114 649 RTVRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 649 r~~~~~~~~~~~~riv~lSAT 669 (2158)
.+..... ..++.+|++|-.
T Consensus 187 ~LK~lAk--el~vpVi~lsQl 205 (338)
T 4a1f_A 187 ELKTLAR--ELEIPIIALVQL 205 (338)
T ss_dssp HHHHHHH--HHTSCEEEEEEC
T ss_pred HHHHHHH--HcCCeEEEEEec
Confidence 5544333 346778888765
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=85.02 E-value=2.1 Score=53.68 Aligned_cols=120 Identities=16% Similarity=0.214 Sum_probs=62.3
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc--ccHHHHHHHHHHHHhhcccCCcEEEEEeCCCcc
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~ia--P~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~ 590 (2158)
.+++++|+|+|||.++.-.+. .+... +.+++++. |.++-+.++...+... .|+.+... +..
T Consensus 102 vIlivG~~G~GKTTt~~kLA~-~l~~~----------G~kVllv~~D~~R~aa~eqL~~~~~~---~gvpv~~~--~~~- 164 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLAR-YFQKR----------GYKVGVVCSDTWRPGAYHQLRQLLDR---YHIEVFGN--PQE- 164 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHH-HHHTT----------TCCEEEEECCCSSTHHHHHHHHHHGG---GTCEEECC--TTC-
T ss_pred EEEEECcCCCCHHHHHHHHHH-HHHHC----------CCeEEEEeCCCcchhHHHHHHHHHHh---cCCcEEec--CCC-
Confidence 488999999999987643332 23221 23566665 6677676666666553 34544321 111
Q ss_pred CHhhhccccEEEcchhHH--HHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEcc
Q 000114 591 TRQQIEETQIIVTTPEKW--DIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (2158)
Q Consensus 591 ~~~~~~~~~IiV~TPekl--d~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSA 668 (2158)
..|..+ +.+... .-..+++||||.+=+++... .++..+........+..-++.++|
T Consensus 165 ------------~dp~~i~~~al~~a-----~~~~~DvVIIDTaGrl~~d~-----~lm~el~~i~~~~~pd~vlLVvDA 222 (443)
T 3dm5_A 165 ------------KDAIKLAKEGVDYF-----KSKGVDIIIVDTAGRHKEDK-----ALIEEMKQISNVIHPHEVILVIDG 222 (443)
T ss_dssp ------------CCHHHHHHHHHHHH-----HHTTCSEEEEECCCCSSCCH-----HHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred ------------CCHHHHHHHHHHHH-----HhCCCCEEEEECCCcccchH-----HHHHHHHHHHHhhcCceEEEEEeC
Confidence 123221 111111 11237899999996544221 122222222222344556777888
Q ss_pred ccC
Q 000114 669 TLP 671 (2158)
Q Consensus 669 Tlp 671 (2158)
|..
T Consensus 223 ~~g 225 (443)
T 3dm5_A 223 TIG 225 (443)
T ss_dssp GGG
T ss_pred CCc
Confidence 864
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=84.98 E-value=2.5 Score=50.30 Aligned_cols=19 Identities=47% Similarity=0.690 Sum_probs=16.3
Q ss_pred CCcEEEEccCCCchHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~ 529 (2158)
..+++++||+|+|||..+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4679999999999998764
|
| >1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A* | Back alignment and structure |
|---|
Probab=84.88 E-value=0.49 Score=44.92 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=45.9
Q ss_pred CCccccCCCCHHHHHHHHhCCCCchhhccCChHHhhhhhcCchh-HHHHHHHHhc
Q 000114 1142 TPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKM-GRTLHKFVHQ 1195 (2158)
Q Consensus 1142 ~~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~ 1195 (2158)
+.|..+||||+...++|-++==+++.+...+.+||.++++ .+. ++.|++++|.
T Consensus 18 s~L~~IpGIG~kr~~~LL~~FgSl~~i~~AS~eEL~~vig-~~~~A~~I~~~l~~ 71 (84)
T 1z00_B 18 DFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHT 71 (84)
T ss_dssp HHHHTCSSCCHHHHHHHHHHSSCHHHHHHSCHHHHHHHHS-CHHHHHHHHHHHTS
T ss_pred HHHHhCCCCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHhC-chHHHHHHHHHHHh
Confidence 5689999999999999987644788999999999999998 556 9999999974
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=84.85 E-value=1.3 Score=53.02 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=17.6
Q ss_pred cCCCcEEEEccCCchhHHHHH
Q 000114 1355 NTDDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~ 1375 (2158)
.....+++.||+|+|||.++-
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHH
Confidence 345679999999999998874
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=84.74 E-value=2 Score=52.75 Aligned_cols=19 Identities=26% Similarity=0.620 Sum_probs=16.5
Q ss_pred CCcEEEEccCCchhHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~ 1375 (2158)
..++++.||+|+|||.++.
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4579999999999998873
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.73 E-value=1.3 Score=55.14 Aligned_cols=45 Identities=18% Similarity=0.274 Sum_probs=27.8
Q ss_pred ceEEeecccccccCC-------hhhHHHHHHHHHHHHhhccccccEEEEccc
Q 000114 625 KLLIIDEIHLLHDNR-------GPVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 625 ~lIIiDEaH~l~d~r-------g~~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (2158)
.+|.|||+|.+...| .......+..++..+......-.++.+-||
T Consensus 277 ~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaAT 328 (437)
T 4b4t_I 277 SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMAT 328 (437)
T ss_dssp EEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEE
T ss_pred cEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeC
Confidence 589999999886433 123444555555555544455566666677
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=84.71 E-value=2.2 Score=48.93 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=26.0
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhc---CCCceEEEEEcc
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKAS---ETGVMRAVYIAP 1398 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~---~~~~~~~v~IaP 1398 (2158)
.+..+++.+|+|+|||..+...+...+.... ..+ .++|+.-
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~--~~~~i~~ 66 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEG--KAMYIDT 66 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSS--EEEEEES
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCC--eEEEEEC
Confidence 4667999999999999887554433222100 123 6787754
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=84.66 E-value=1.5 Score=52.82 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=15.5
Q ss_pred cEEEEccCCchhHHHHHH
Q 000114 1359 NVLVAAPTGSGKTICSEF 1376 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~l 1376 (2158)
++++.||+|+|||.++..
T Consensus 44 ~~ll~G~~G~GKt~la~~ 61 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHC 61 (323)
T ss_dssp CEEEECSTTSSHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHH
Confidence 599999999999987743
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=84.39 E-value=1.8 Score=48.00 Aligned_cols=43 Identities=23% Similarity=0.215 Sum_probs=33.1
Q ss_pred HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccH
Q 000114 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMK 560 (2158)
Q Consensus 507 ~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~k 560 (2158)
+-....++++..++|.|||.+|+-..++.+..+ .+|+++.-.+
T Consensus 24 ~~~~~g~i~v~tG~GkGKTTaA~GlalRA~g~G-----------~rV~~vQF~K 66 (196)
T 1g5t_A 24 AQEERGIIIVFTGNGKGKTTAAFGTAARAVGHG-----------KNVGVVQFIK 66 (196)
T ss_dssp ---CCCCEEEEESSSSCHHHHHHHHHHHHHHTT-----------CCEEEEESSC
T ss_pred ccccCceEEEECCCCCCHHHHHHHHHHHHHHCC-----------CeEEEEEeeC
Confidence 333456899999999999999998889988764 3788886555
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=84.34 E-value=2.6 Score=52.84 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=65.8
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEc--ccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA--PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKL 1435 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~Ia--P~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~ 1435 (2158)
..+++++|+|+|||..+.- +...+.. .+. +++++. |.|.-+.++...|.... |+.+..... .
T Consensus 101 ~vIlivG~~G~GKTTt~~k-LA~~l~~--~G~--kVllv~~D~~R~aa~eqL~~~~~~~----gvpv~~~~~--~----- 164 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAK-LARYFQK--RGY--KVGVVCSDTWRPGAYHQLRQLLDRY----HIEVFGNPQ--E----- 164 (443)
T ss_dssp EEEEEECCTTSSHHHHHHH-HHHHHHT--TTC--CEEEEECCCSSTHHHHHHHHHHGGG----TCEEECCTT--C-----
T ss_pred eEEEEECcCCCCHHHHHHH-HHHHHHH--CCC--eEEEEeCCCcchhHHHHHHHHHHhc----CCcEEecCC--C-----
Confidence 3578899999999987733 3333433 233 555554 66776777777666433 444432111 1
Q ss_pred ccCCcEEEeCHHHHH-HHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCC
Q 000114 1436 LEKGQIIISTPEKWD-ALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2158)
Q Consensus 1436 l~~~~IIV~TPe~l~-~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~ 1512 (2158)
..|..+. ..+.... -...+++|||.+=.+.. -+.....++.+.....+..-++.++|+..
T Consensus 165 --------~dp~~i~~~al~~a~----~~~~DvVIIDTaGrl~~-----d~~lm~el~~i~~~~~pd~vlLVvDA~~g 225 (443)
T 3dm5_A 165 --------KDAIKLAKEGVDYFK----SKGVDIIIVDTAGRHKE-----DKALIEEMKQISNVIHPHEVILVIDGTIG 225 (443)
T ss_dssp --------CCHHHHHHHHHHHHH----HTTCSEEEEECCCCSSC-----CHHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred --------CCHHHHHHHHHHHHH----hCCCCEEEEECCCcccc-----hHHHHHHHHHHHHhhcCceEEEEEeCCCc
Confidence 1233221 1222211 13478999998854421 12244445544444445666777888754
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=84.33 E-value=2 Score=52.57 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=27.6
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEccc
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPL 1399 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~ 1399 (2158)
.+..++|.+|+|||||..+...+...... ++ +++|+.--
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~--~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA---GG--IAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TC--CEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CC--eEEEEECC
Confidence 45679999999999998886555444332 44 67887643
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.29 E-value=0.85 Score=57.22 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=27.7
Q ss_pred cceEEeecccccccCCh-------hhHHHHHHHHHHHHhhccccccEEEEccc
Q 000114 624 VKLLIIDEIHLLHDNRG-------PVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 624 v~lIIiDEaH~l~d~rg-------~~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (2158)
-.+|.|||+|.+...|+ ......+..++..+......-+++.+-||
T Consensus 275 P~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaT 327 (434)
T 4b4t_M 275 PTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAAT 327 (434)
T ss_dssp SEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEEC
T ss_pred CeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeC
Confidence 36889999998864331 23344555555555554445556666666
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=84.13 E-value=1.7 Score=50.08 Aligned_cols=143 Identities=13% Similarity=0.107 Sum_probs=64.9
Q ss_pred CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC-------CCcEEEEEcCC
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG-------LGMRVVELTGE 1428 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~-------~g~~v~~ltG~ 1428 (2158)
.+..++|+|++|+|||..++-.+.+...+. +. .++|+.-. .-..+..+++. .++.. ..+.+......
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~--~v~~~s~E-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~ 102 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GE--PGVFVTLE-ERARDLRREMA-SFGWDFEKYEKEGKIAIVDGVSS 102 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CC--CEEEEESS-SCHHHHHHHHH-TTTCCHHHHHHTTSEEEEC----
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CC--Cceeeccc-CCHHHHHHHHH-HcCCChHHHHhcCcchhhhhHHH
Confidence 467799999999999987765555444431 23 56776532 12333333333 11110 01111111000
Q ss_pred cchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC--CCCChHHHHHHHHHHHHhhcCCCceEEE
Q 000114 1429 TAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG--QGGPVLEVIVSRMRYIASQVENKIRIVA 1506 (2158)
Q Consensus 1429 ~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~--~~g~~~e~~isrl~~i~~~~~~~~riV~ 1506 (2158)
..............-.+++.+....+... .....+++|+|-...+.. ..-..+..++..++.+.... ++.+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~--~i~vi~ 177 (251)
T 2zts_A 103 VVGLPSEEKFVLEDRFNVDNFLRYIYRVV---KAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM--GVTTIL 177 (251)
T ss_dssp ---------------CCHHHHHHHHHHHH---HHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH--CCEEEE
T ss_pred HhhcccchhccccccccHHHHHHHHHHHH---HhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHc--CCCeEE
Confidence 00000000000111123333333222221 224578999999987643 22334555666666665543 566666
Q ss_pred ecc
Q 000114 1507 LST 1509 (2158)
Q Consensus 1507 lSA 1509 (2158)
++-
T Consensus 178 ~~q 180 (251)
T 2zts_A 178 TTE 180 (251)
T ss_dssp EEC
T ss_pred EEE
Confidence 654
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=84.01 E-value=0.69 Score=55.32 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~ 529 (2158)
..++++||+|+|||..+-
T Consensus 37 ~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp SEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 358999999999998764
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=83.99 E-value=1.6 Score=55.36 Aligned_cols=51 Identities=12% Similarity=0.061 Sum_probs=31.4
Q ss_pred cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHH
Q 000114 509 SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNL 570 (2158)
Q Consensus 509 ~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~ 570 (2158)
..++-++|+|++|+|||..++-.+....... +.+++|+..--. ..|+..++
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~----------g~~vl~~slE~~-~~~l~~R~ 248 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKE----------GVGVGIYSLEMP-AAQLTLRM 248 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTT----------CCCEEEEESSSC-HHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC----------CCeEEEEECCCC-HHHHHHHH
Confidence 3456689999999999987766555554321 225788765322 23444443
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=83.92 E-value=3.9 Score=46.95 Aligned_cols=52 Identities=21% Similarity=0.244 Sum_probs=33.1
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
.+.-++++|++|+|||..++-.+.+...... .+++|+.-.-. ..++.+++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~----------~~v~~~s~E~~-~~~~~~~~~~ 80 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG----------EPGVFVTLEER-ARDLRREMAS 80 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHC----------CCEEEEESSSC-HHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcC----------CCceeecccCC-HHHHHHHHHH
Confidence 3567899999999999887766665544431 24777764322 4455555443
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.92 E-value=1.1 Score=54.42 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=16.4
Q ss_pred CCcEEEEccCCchhHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~ 1375 (2158)
..++++.||+|+|||..+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 3579999999999998873
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=83.86 E-value=2.2 Score=50.90 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=16.0
Q ss_pred CCcEEEEccCCchhHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~ 1375 (2158)
...+++.||+|+|||..+.
T Consensus 36 p~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp CSEEEEEECTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3468999999999998874
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.78 E-value=1.1 Score=55.01 Aligned_cols=19 Identities=42% Similarity=0.684 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCchHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~ 529 (2158)
..++|++||+|+|||.++-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999998764
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=83.59 E-value=3.2 Score=51.09 Aligned_cols=39 Identities=31% Similarity=0.502 Sum_probs=24.6
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEc
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA 1397 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~Ia 1397 (2158)
..+++|.||+|+|||..+.. +.+.+...... +..++++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~-l~~~~~~~~~~-~~~~~~i~ 83 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKF-VLSKLHKKFLG-KFKHVYIN 83 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHH-HHHHHHHHTCS-SCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHHhcC-CceEEEEE
Confidence 46799999999999987743 44444331110 22566665
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=83.58 E-value=0.9 Score=54.90 Aligned_cols=52 Identities=15% Similarity=0.038 Sum_probs=32.8
Q ss_pred cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHh
Q 000114 509 SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSN 572 (2158)
Q Consensus 509 ~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~ 572 (2158)
..++-++|+|++|+|||..++..+......+ .+++|++-- .=..|+..++..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g-----------~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDND-----------DVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT-----------CEEEEEESS-SCHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-----------CeEEEEECC-CCHHHHHHHHHH
Confidence 3456789999999999987766555544321 368888643 223444444443
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=83.57 E-value=1.6 Score=53.65 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=28.8
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHH
Q 000114 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (2158)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaL 562 (2158)
....++|.+|+|+|||..++-.+......+ .+++|+..-.++
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g-----------~~vlyi~~E~s~ 114 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAG-----------GTCAFIDAEHAL 114 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT-----------CCEEEEESSCCC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCC-----------CeEEEEECCCCh
Confidence 346689999999999987766555544321 268888765443
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=83.54 E-value=2.9 Score=51.49 Aligned_cols=20 Identities=40% Similarity=0.639 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCchHHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAVL 530 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l 530 (2158)
..+++++||+|+|||..+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~ 64 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKF 64 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 45799999999999987643
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=83.52 E-value=1.1 Score=53.37 Aligned_cols=20 Identities=30% Similarity=0.614 Sum_probs=17.2
Q ss_pred CCCcEEEEccCCchhHHHHH
Q 000114 1356 TDDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~ 1375 (2158)
...++++.||+|+|||.++.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHH
Confidence 35689999999999998873
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=83.39 E-value=6.9 Score=44.16 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=17.8
Q ss_pred CCCcEEEEccCCCchHHHHHHHH
Q 000114 510 SADNILLCAPTGAGKTNVAVLTI 532 (2158)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~i 532 (2158)
.++.+++.||+|||||..+...+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHH
Confidence 35678999999999997665444
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=83.36 E-value=1.6 Score=53.47 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=29.4
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHH
Q 000114 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (2158)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaL 562 (2158)
....+++.+|+|+|||..++..+......+ .+++|+..--++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g-----------~~vlyid~E~s~ 103 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG-----------KTCAFIDAEHAL 103 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-----------CCEEEEESSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC-----------CeEEEEeCCCCc
Confidence 356789999999999998876665554322 268888764433
|
| >2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A* | Back alignment and structure |
|---|
Probab=83.14 E-value=0.97 Score=40.45 Aligned_cols=54 Identities=15% Similarity=0.333 Sum_probs=44.3
Q ss_pred CCccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHH-HHHHHHHHcc
Q 000114 1976 DSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQ-LLDIARFCNR 2035 (2158)
Q Consensus 1976 ~s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~-~~~v~~~~~~ 2035 (2158)
.+.|..|||||+...+.|-++ +.|+.++..++.++..++++ ... .+.|.++++.
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~----Fgs~~~i~~As~eeL~~vig--~~~~A~~I~~~l~~ 57 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHH----VKNIAELAALSQDELTSILG--NAANAKQLYDFIHT 57 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHH----CSSHHHHHTCCHHHHHHHHS--CHHHHHHHHHHHHC
T ss_pred HhHHHcCCCCCHHHHHHHHHH----cCCHHHHHHCCHHHHHHHcC--chHHHHHHHHHHhc
Confidence 356889999999999987654 67999999999999999844 555 7888988863
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=83.05 E-value=1.8 Score=51.90 Aligned_cols=28 Identities=14% Similarity=0.239 Sum_probs=19.4
Q ss_pred HHHHHHcCC--CcEEEEccCCCchHHHHHH
Q 000114 503 VYKSALSSA--DNILLCAPTGAGKTNVAVL 530 (2158)
Q Consensus 503 ~i~~~l~~~--~nvlv~APTGsGKT~~a~l 530 (2158)
.+..++..+ .+++++||+|+|||..+..
T Consensus 32 ~l~~~l~~~~~~~~ll~G~~G~GKt~la~~ 61 (323)
T 1sxj_B 32 RLQQIAKDGNMPHMIISGMPGIGKTTSVHC 61 (323)
T ss_dssp HHHHHHHSCCCCCEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHcCCCCeEEEECcCCCCHHHHHHH
Confidence 344444433 3599999999999977643
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=83.00 E-value=5.4 Score=49.62 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=16.4
Q ss_pred CCcEEE--EccCCchhHHHHHH
Q 000114 1357 DDNVLV--AAPTGSGKTICSEF 1376 (2158)
Q Consensus 1357 ~~nvli--~ApTGSGKTl~a~l 1376 (2158)
..+++| .||+|+|||.++..
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~ 71 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKF 71 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHH
Confidence 457888 99999999987743
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=82.92 E-value=1.3 Score=58.31 Aligned_cols=116 Identities=22% Similarity=0.291 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHhcC-CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCC
Q 000114 1341 HFNPIQTQVFTVLYNT-DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLG 1419 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~-~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g 1419 (2158)
.+|.-|.+++..++.- ....++.|+-|.|||.+.-+++-. + .+ ++++.+|+.+-+....+ +. +.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~-----~~--~~~vtAP~~~a~~~l~~-~~---~~--- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-I-----AG--RAIVTAPAKASTDVLAQ-FA---GE--- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-S-----SS--CEEEECSSCCSCHHHHH-HH---GG---
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-H-----Hh--CcEEECCCHHHHHHHHH-Hh---hC---
Confidence 6899999999998762 235789999999999665444432 2 12 46999999886654332 11 10
Q ss_pred cEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcC
Q 000114 1420 MRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVE 1499 (2158)
Q Consensus 1420 ~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~ 1499 (2158)
.|-+..|..+ .. ...+.+++|||||=.|. +..++.+..
T Consensus 240 --------------------~i~~~~Pd~~---~~------~~~~~dlliVDEAAaIp----------~pll~~ll~--- 277 (671)
T 2zpa_A 240 --------------------KFRFIAPDAL---LA------SDEQADWLVVDEAAAIP----------APLLHQLVS--- 277 (671)
T ss_dssp --------------------GCCBCCHHHH---HH------SCCCCSEEEEETGGGSC----------HHHHHHHHT---
T ss_pred --------------------CeEEeCchhh---hh------CcccCCEEEEEchhcCC----------HHHHHHHHh---
Confidence 1334456542 11 23458999999999885 222333322
Q ss_pred CCceEEEeccCCCCh
Q 000114 1500 NKIRIVALSTSLANA 1514 (2158)
Q Consensus 1500 ~~~riV~lSATl~n~ 1514 (2158)
....|+||.|+...
T Consensus 278 -~~~~v~~~tTv~GY 291 (671)
T 2zpa_A 278 -RFPRTLLTTTVQGY 291 (671)
T ss_dssp -TSSEEEEEEEBSST
T ss_pred -hCCeEEEEecCCcC
Confidence 34458888888654
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.85 E-value=1.7 Score=54.63 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=27.5
Q ss_pred cceEEeecccccccCCh-------hhHHHHHHHHHHHHhhccccccEEEEccc
Q 000114 624 VKLLIIDEIHLLHDNRG-------PVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 624 v~lIIiDEaH~l~d~rg-------~~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (2158)
-.+|+|||++.+...|+ ......+..++..+......-.++.+-||
T Consensus 303 P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaAT 355 (467)
T 4b4t_H 303 ACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFAT 355 (467)
T ss_dssp SEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEEC
T ss_pred CceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence 36899999998865331 22333444455555444455566777677
|
| >1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B | Back alignment and structure |
|---|
Probab=82.82 E-value=0.85 Score=41.74 Aligned_cols=55 Identities=13% Similarity=0.237 Sum_probs=44.6
Q ss_pred CccccCCCCHHHHHHHHhCCC-CchhhccCChHHhhhhhcCc-hhHHHHHHHHhcCC
Q 000114 1143 PLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRFP-KMGRTLHKFVHQFP 1197 (2158)
Q Consensus 1143 ~l~q~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~P 1197 (2158)
+|.+++|+++..+.+|..+|+ +++++...+.++|..+.+.. ..+..|...++..|
T Consensus 8 ~l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~~~ 64 (70)
T 1wcn_A 8 DLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNIC 64 (70)
T ss_dssp HHHSSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHHcc
Confidence 588999999999999999998 89999999999999998864 34456665555433
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=82.52 E-value=1.1 Score=54.95 Aligned_cols=18 Identities=44% Similarity=0.744 Sum_probs=15.8
Q ss_pred CcEEEEccCCCchHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~ 529 (2158)
.++|++||+|+|||.++-
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 469999999999998774
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=82.48 E-value=1.6 Score=53.42 Aligned_cols=41 Identities=34% Similarity=0.310 Sum_probs=27.7
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEAL 1402 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raL 1402 (2158)
+..++|.+|+|||||..+...+. .+.. .++ +++|+..-..+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~-~~~~--~gg--~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIA-EAQK--MGG--VAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH-HHHH--TTC--CEEEEESSCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-HHHh--cCC--eEEEEeccccc
Confidence 56789999999999987744443 3332 244 78888765443
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.34 E-value=3.8 Score=51.32 Aligned_cols=18 Identities=39% Similarity=0.648 Sum_probs=16.0
Q ss_pred CCcEEEEccCCchhHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICS 1374 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a 1374 (2158)
...+|+.||+|+|||+.+
T Consensus 206 prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCEEEEESCTTTTHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456999999999999887
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=81.94 E-value=4.1 Score=45.75 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=18.1
Q ss_pred CCcEEEEccCCCchHHHHHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAVLTIL 533 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~l~il 533 (2158)
++-+++.||+|+|||..+...+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999987655444
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=81.92 E-value=1.2 Score=52.95 Aligned_cols=91 Identities=11% Similarity=0.110 Sum_probs=53.5
Q ss_pred cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcccC
Q 000114 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEK 1438 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~ 1438 (2158)
.++|.+|+|+|||..++-.+...... ..++ +++||..-.++.... ++ +++ +. .
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-g~g~--~vlyId~E~s~~~~r---a~-~lG----vd----------------~ 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-YPDA--VCLFYDSEFGITPAY---LR-SMG----VD----------------P 82 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-CTTC--EEEEEESSCCCCHHH---HH-HTT----CC----------------G
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-CCCc--eEEEEeccchhhHHH---HH-HhC----CC----------------H
Confidence 58999999999999887666655543 2244 899998766654332 22 443 11 0
Q ss_pred CcEEEeCH---HHH-HHHHhhhhccccccceeEEEeccccccc
Q 000114 1439 GQIIISTP---EKW-DALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1439 ~~IIV~TP---e~l-~~l~r~~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
.+++++.| +.. ..+...... ..-..+++||||=+..+.
T Consensus 83 d~llv~~~~~~E~~~l~i~~~l~~-i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 ERVIHTPVQSLEQLRIDMVNQLDA-IERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp GGEEEEECSBHHHHHHHHHHHHHT-CCTTCCEEEEEECSTTCB
T ss_pred HHeEEEcCCCHHHHHHHHHHHHHH-hhccCceEEEEecccccc
Confidence 13444444 333 222222100 112468999999999774
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=81.74 E-value=1.3 Score=53.13 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=16.8
Q ss_pred CCCcEEEEccCCCchHHHHH
Q 000114 510 SADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~ 529 (2158)
....++++||+|+|||..+-
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHH
Confidence 34579999999999998764
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=81.42 E-value=2.1 Score=52.21 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=15.8
Q ss_pred CcEEEEccCCchhHHHHH
Q 000114 1358 DNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~ 1375 (2158)
.++++.||+|+|||.++.
T Consensus 59 ~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 469999999999998873
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=81.16 E-value=3.4 Score=49.49 Aligned_cols=41 Identities=12% Similarity=0.111 Sum_probs=25.3
Q ss_pred cccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEc
Q 000114 620 YTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLS 667 (2158)
Q Consensus 620 ~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lS 667 (2158)
.....+++||||+|.+... ..+ .+++.++..++...+|+.+
T Consensus 79 ~~~~~kvviIdead~lt~~---a~n----aLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 79 ELYTRKYVIVHDCERMTQQ---AAN----AFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSSEEEEETTGGGBCHH---HHH----HTHHHHHSCCTTEEEEEEE
T ss_pred ccCCceEEEeccHHHhCHH---HHH----HHHHHHhCCCCCeEEEEEE
Confidence 3456789999999998532 222 2344455555566666654
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.15 E-value=4.2 Score=51.03 Aligned_cols=18 Identities=39% Similarity=0.708 Sum_probs=16.2
Q ss_pred CCcEEEEccCCchhHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICS 1374 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a 1374 (2158)
...+|+.||+|+|||+.+
T Consensus 215 prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 466999999999999887
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.11 E-value=4 Score=51.19 Aligned_cols=18 Identities=33% Similarity=0.643 Sum_probs=16.2
Q ss_pred CCcEEEEccCCchhHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICS 1374 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a 1374 (2158)
...+|+.||+|+|||+.+
T Consensus 215 prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeeEEECcCCCCHHHHH
Confidence 467999999999999887
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=80.97 E-value=2.6 Score=51.51 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=28.6
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHH
Q 000114 510 SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKA 561 (2158)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ka 561 (2158)
.++.+++.+|.|+|||..++..+......+ .+++|+.--..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g-----------~~vlyi~~E~~ 100 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAG-----------GIAAFIDAEHA 100 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT-----------CCEEEEESSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC-----------CeEEEEECCCC
Confidence 356689999999999988776665554322 26888765433
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.60 E-value=6 Score=49.20 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=16.1
Q ss_pred CCcEEEEccCCchhHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICS 1374 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a 1374 (2158)
...+|+.||+|+|||+.+
T Consensus 216 prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CSEEEEESSTTTTHHHHH
T ss_pred CCCCceECCCCchHHHHH
Confidence 456999999999999887
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=80.44 E-value=2.3 Score=48.29 Aligned_cols=40 Identities=15% Similarity=0.054 Sum_probs=28.6
Q ss_pred CCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHH
Q 000114 1357 DDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEA 1401 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~ra 1401 (2158)
+.-.++.||-|||||..++-.+.+.... +. +++++.|.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~---g~--kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIA---QY--KCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTT---TC--CEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC---CC--eEEEEeecCC
Confidence 3446788999999998876666655433 33 7888888753
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=80.33 E-value=2.5 Score=51.61 Aligned_cols=39 Identities=13% Similarity=0.104 Sum_probs=0.0
Q ss_pred CccccC--CCCHHHHHHHHhCCC-CchhhccCChHHhhhhhc
Q 000114 1143 PLRQFN--GIPNEILMKLEKKDF-AWERYYDLSPQELGELIR 1181 (2158)
Q Consensus 1143 ~l~q~~--~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 1181 (2158)
|+.+++ |+++..+.+|.++|+ +++++...++.+|.++.+
T Consensus 26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~ 67 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKG 67 (343)
T ss_dssp ------------------------------------------
T ss_pred cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhC
Confidence 677777 899999999999997 566666667777766654
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=80.16 E-value=1.7 Score=55.24 Aligned_cols=19 Identities=42% Similarity=0.623 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCchHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~ 529 (2158)
..++|++||+|+|||..+-
T Consensus 167 ~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3579999999999998764
|
| >1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A* | Back alignment and structure |
|---|
Probab=80.07 E-value=1.3 Score=42.10 Aligned_cols=53 Identities=15% Similarity=0.333 Sum_probs=44.0
Q ss_pred CccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHH-HHHHHHHHcc
Q 000114 1977 SMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQ-LLDIARFCNR 2035 (2158)
Q Consensus 1977 s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~-~~~v~~~~~~ 2035 (2158)
+.|..|||||+...++|-++ +.++.+|..++.++...+++ ... .+.|.+|++.
T Consensus 18 s~L~~IpGIG~kr~~~LL~~----FgSl~~i~~AS~eEL~~vig--~~~~A~~I~~~l~~ 71 (84)
T 1z00_B 18 DFLLKMPGVNAKNCRSLMHH----VKNIAELAALSQDELTSILG--NAANAKQLYDFIHT 71 (84)
T ss_dssp HHHHTCSSCCHHHHHHHHHH----SSCHHHHHHSCHHHHHHHHS--CHHHHHHHHHHHTS
T ss_pred HHHHhCCCCCHHHHHHHHHH----cCCHHHHHHCCHHHHHHHhC--chHHHHHHHHHHHh
Confidence 45889999999999987654 67999999999999999854 555 7888998863
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=80.03 E-value=3.2 Score=52.53 Aligned_cols=143 Identities=15% Similarity=0.128 Sum_probs=71.0
Q ss_pred HcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEE-EeC
Q 000114 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRE-LSG 586 (2158)
Q Consensus 508 l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~-l~G 586 (2158)
+..++-++|+|++|+|||..++-.+.+....+ .+++|++---. ..|+..++..... |+.... ..|
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g-----------~~vl~fSlEms-~~ql~~R~~~~~~--~i~~~~l~~g 259 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDND-----------DVVNLHSLEMG-KKENIKRLIVTAG--SINAQKIKAA 259 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTT-----------CEEEEECSSSC-TTHHHHHHHHHHS--CCCHHHHHHT
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcC-----------CEEEEEECCCC-HHHHHHHHHHHHc--CCCHHHHhcc
Confidence 34456789999999999988776666655431 26888864322 2344444332211 111100 112
Q ss_pred C--CccCH--------hhhccccEEE-c----chhHHHHHHhccCCCccccccc--eEEeecccccccC-----ChhhHH
Q 000114 587 D--QTLTR--------QQIEETQIIV-T----TPEKWDIITRKSGDRTYTQLVK--LLIIDEIHLLHDN-----RGPVLE 644 (2158)
Q Consensus 587 d--~~~~~--------~~~~~~~IiV-~----TPekld~l~r~~~~~~~l~~v~--lIIiDEaH~l~d~-----rg~~le 644 (2158)
. ..... .......+.| - |++.+....++.. .-..++ +||||=++.+... +...+.
T Consensus 260 ~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~---~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~ 336 (444)
T 3bgw_A 260 RRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTK---RKNPGKRVIVMIDYLQLLEPAKANDSRTNQIS 336 (444)
T ss_dssp GGGTCCSCHHHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHH---HHSCSSCEEEEEECSTTSBCSCSSSCHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH---HHhCCCCeEEEEecHHhccCCCCCCCHHHHHH
Confidence 1 11110 0112345554 2 3343322222221 112578 9999999988532 222344
Q ss_pred HHHHHHHHHHhhccccccEEEEccc
Q 000114 645 SIVARTVRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 645 ~iv~r~~~~~~~~~~~~riv~lSAT 669 (2158)
.+...+..... ..++.++++|-.
T Consensus 337 ~i~~~Lk~lAk--e~~v~vi~lsql 359 (444)
T 3bgw_A 337 QISRDLKKMAR--ELDVVVIALSQL 359 (444)
T ss_dssp HHHHHHHHHHH--HHTCEEEEEEEC
T ss_pred HHHHHHHHHHH--HhCCeEEEEecC
Confidence 44444433322 346777777764
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=80.03 E-value=2.1 Score=54.25 Aligned_cols=18 Identities=33% Similarity=0.650 Sum_probs=15.9
Q ss_pred CcEEEEccCCchhHHHHH
Q 000114 1358 DNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~ 1375 (2158)
.++++.||+|+|||.++.
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 479999999999998874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2158 | ||||
| d2q0zx1 | 176 | a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo | 4e-60 | |
| d2q0zx1 | 176 | a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo | 2e-44 | |
| d2q0zx2 | 114 | b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo | 5e-48 | |
| d2p6ra4 | 201 | c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob | 5e-30 | |
| d2p6ra4 | 201 | c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob | 1e-28 | |
| d2p6ra1 | 85 | a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobu | 2e-19 | |
| d2p6ra1 | 85 | a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobu | 2e-16 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 1e-16 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 2e-16 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 1e-13 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 7e-07 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 9e-12 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 5e-10 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 2e-11 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 3e-06 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 4e-09 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 9e-07 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 5e-08 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 4e-06 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 5e-08 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 3e-05 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 2e-06 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 7e-04 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 5e-06 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 1e-05 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 2e-05 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 4e-05 | |
| d1rifa_ | 282 | c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 | 8e-05 | |
| d1rifa_ | 282 | c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 | 0.002 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 1e-04 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 4e-04 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 4e-04 |
| >d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Length = 176 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Sec63 N-terminal domain-like superfamily: Sec63 N-terminal domain-like family: Sec63 N-terminal domain domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Score = 202 bits (514), Expect = 4e-60
Identities = 98/179 (54%), Positives = 132/179 (73%), Gaps = 3/179 (1%)
Query: 1859 TRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHF 1918
T+++GL+E++++A+EY +PIR E+ ++R+L NPKF DPHVK N LLQAH
Sbjct: 1 TKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHL 60
Query: 1919 SRQQVGGNLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSM 1978
SR Q+ L+ D EE+L A RL+QA VDV+SSNGWLS AL AME++QMVTQ MW +DS
Sbjct: 61 SRMQLSAELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSY 120
Query: 1979 LLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFP 2037
L QLPHF + KRC + K +E+VFD++EMED+ER LLQ++D Q+ D+ARFCNR+P
Sbjct: 121 LKQLPHFTSEHIKRCTD---KGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYP 176
|
| >d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Length = 176 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Sec63 N-terminal domain-like superfamily: Sec63 N-terminal domain-like family: Sec63 N-terminal domain domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Score = 157 bits (398), Expect = 2e-44
Identities = 45/173 (26%), Positives = 86/173 (49%), Gaps = 4/173 (2%)
Query: 1028 ELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKE-SLEEPSAKINVLLQAYISQLK 1086
L + S + E++ + +R E L +L +VP + +P K N+LLQA++S+++
Sbjct: 5 GLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQ 64
Query: 1087 LEGLSLTSDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQ 1146
L L SD I A RL++A +++ GW A A+ L++MVT+ MWS + L+Q
Sbjct: 65 LSA-ELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQ 123
Query: 1147 FNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRF-PKMGRTLHKFVHQFP 1197
+E + + K + ++ +E L++ + +F +++P
Sbjct: 124 LPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYP 176
|
| >d2q0zx2 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Length = 114 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: Sec63 C-terminal domain-like domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Score = 165 bits (419), Expect = 5e-48
Identities = 64/118 (54%), Positives = 90/118 (76%), Gaps = 4/118 (3%)
Query: 2038 NIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTK 2097
NI++S+EV D +++R+G + + V LER+ E GPV + +P+ +EEGWW+V+GD K
Sbjct: 1 NIELSYEVVDKDSIRSGGPVVVLVQLEREEE---VTGPVIAPLFPQKREEGWWVVIGDAK 57
Query: 2098 TNQLLAIKRVSLQRKSRVKLDFAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVDVKEA 2155
+N L++IKR++LQ+K++VKLDF AP G YTLYFM D+YMGCDQEY F+VDVKEA
Sbjct: 58 SNSLISIKRLTLQQKAKVKLDFVAP-ATGAHNYTLYFMSDAYMGCDQEYKFSVDVKEA 114
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 116 bits (292), Expect = 5e-30
Identities = 63/202 (31%), Positives = 102/202 (50%), Gaps = 13/202 (6%)
Query: 697 PVPLSQQ-YIGIQVKKPLQRFQLMNDLCYEKVV--AVAGKHQVLIFVHSRKETAKTARAI 753
PVPL + ++ F + +E++V VA VL+F +R+ KTA +
Sbjct: 1 PVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKL 60
Query: 754 RDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVE 813
++++ + + + IL+ + + S L + + G A HHAG+ G R++VE
Sbjct: 61 SAI------TAKYVENEGLEKAILEEN-EGEMSRKLAECVRKGAAFHHAGLLNGQRRVVE 113
Query: 814 DLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873
D F G+++V+V+T TLA GVNLPA VI++ ++ G + + QM GRAGR
Sbjct: 114 DAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFD---GYSKRIKVSEYKQMAGRAGR 170
Query: 874 PQYDSYGEGIIITGHSELRYYL 895
P D GE III G + +
Sbjct: 171 PGMDERGEAIIIVGKRDREIAV 192
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 113 bits (282), Expect = 1e-28
Identities = 50/205 (24%), Positives = 82/205 (40%), Gaps = 11/205 (5%)
Query: 1537 PVPLEIHIQ-GVDITNFEARMQAMTKPTFTAIV-QHAKNEKPALVFVPSRKYVRLTAVDL 1594
PVPL + + F+ + F +V + LVF +R+ TAV L
Sbjct: 1 PVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKL 60
Query: 1595 MTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSAL 1654
++ + + E + L +R G + H GL + VV
Sbjct: 61 SAITAKYVENEGLEKAILEEN-----EGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDA 115
Query: 1655 FEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPL 1714
F G IKV V + ++ GV L A V+V +DG V++ QM G A RP
Sbjct: 116 FRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGY---SKRIKVSEYKQMAGRAGRPG 172
Query: 1715 LDNSGKCVILCHAPRKEY-YKKFLY 1738
+D G+ +I+ +E K++++
Sbjct: 173 MDERGEAIIIVGKRDREIAVKRYIF 197
|
| >d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 85 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: RecQ helicase DNA-binding domain-like domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 82.2 bits (203), Expect = 2e-19
Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 21/103 (20%)
Query: 1743 VESHLH--HFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHL 1800
+ S L L + + I G + ++ D+ TF +++ +
Sbjct: 2 ITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEIS-------------- 47
Query: 1801 SDHLSELVENTISDLEASKCIIIEEDMDLSPSNHGMIASYYYI 1843
LS +E + LE ++ L+P+ G + S YI
Sbjct: 48 ---LSYELERVVRQLENWGMVVE--AAHLAPTKLGSLVSRLYI 85
|
| >d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 85 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: RecQ helicase DNA-binding domain-like domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 73.7 bits (181), Expect = 2e-16
Identities = 15/107 (14%), Positives = 31/107 (28%), Gaps = 25/107 (23%)
Query: 904 IESQFV--SKLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKED 961
I S+ + L + I G + +E ++ T+ + + +
Sbjct: 2 ITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISL------------- 48
Query: 962 ITLGERRADLVHTAATILDRNNLVKYDRKSGYFQVTDLGRIASYYYI 1008
+ + L+ +V T LG + S YI
Sbjct: 49 -------SYELERVVRQLENWGMVVEAAH---LAPTKLGSLVSRLYI 85
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 78.5 bits (192), Expect = 1e-16
Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 32/227 (14%)
Query: 477 IKISEMPEWAQPAF------KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVL 530
+K+ E+ E +G+ +L Q+ + S N+LL PT AGKT +A +
Sbjct: 1 MKVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSG-KNLLLAMPTAAGKTLLAEM 59
Query: 531 TILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTL 590
++++ K +YV P++AL E + ++ ++
Sbjct: 60 AMVREA-----------IKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESR 108
Query: 591 TRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN-RGPVLESIVAR 649
+ I+ T+ + +I ++ L++DEIHLL RG LE +V +
Sbjct: 109 DEHLGDCDIIVTTSEKADSLIRNRASWIKAV---SCLVVDEIHLLDSEKRGATLEILVTK 165
Query: 650 TVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKGLFYFDNSYR 696
+ + +R++GLSAT PN ++A +L + + + +R
Sbjct: 166 ----MRRMNKALRVIGLSATAPNVTEIAEWLDADY------YVSDWR 202
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 78.1 bits (191), Expect = 2e-16
Identities = 55/200 (27%), Positives = 106/200 (53%), Gaps = 16/200 (8%)
Query: 1326 ALRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQK 1384
++ + L +G + P Q + +++ N+L+A PT +GKT+ +E A++R K
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVEKVFS-GKNLLLAMPTAAGKTLLAEMAMVREAIK 67
Query: 1385 ASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIIS 1444
+++Y+ PL ALA E+Y ++ GL + + TG+ + L II++
Sbjct: 68 -----GGKSLYVVPLRALAGEKYESFKKWEKIGLRIGIS--TGDYESRDEHLGDCDIIVT 120
Query: 1445 TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMRYIASQVENKIR 1503
T EK D+L + +++ VS ++DE+HL+ + G LE++V++MR + + R
Sbjct: 121 TSEKADSL--IRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKAL----R 174
Query: 1504 IVALSTSLANAKDLGEWIGA 1523
++ LS + N ++ EW+ A
Sbjct: 175 VIGLSATAPNVTEIAEWLDA 194
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 69.7 bits (169), Expect = 1e-13
Identities = 37/211 (17%), Positives = 76/211 (36%), Gaps = 19/211 (9%)
Query: 1314 TELLDLQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTIC 1373
E+L+L+ L+ G++ F P Q ++ + + D LV PTG GK++C
Sbjct: 4 AEVLNLESGAKQVLQE------TFGYQQFRPGQEEIIDTVLSGRD-CLVVMPTGGGKSLC 56
Query: 1374 SEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDL 1433
+ L + V ++PL +L K++ + + + + +
Sbjct: 57 YQIPALLLN--------GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVM 108
Query: 1434 KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRY 1493
GQI + + + + L +DE H I G + +
Sbjct: 109 TGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQL 168
Query: 1494 IASQVENKIRIVALSTSLANA--KDLGEWIG 1522
Q + +AL+ + + +D+ +G
Sbjct: 169 R--QRFPTLPFMALTATADDTTRQDIVRLLG 197
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 50.0 bits (118), Expect = 7e-07
Identities = 34/195 (17%), Positives = 60/195 (30%), Gaps = 20/195 (10%)
Query: 492 GMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNY 551
G Q Q + + LS D L+ PTG GK+ + L
Sbjct: 22 GYQQFRPGQEEIIDTVLSGRD-CLVVMPTGGGKSLCYQIPALLLNG-------------- 66
Query: 552 KIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELS-GDQTLTRQQIEETQIIVTTPEKWDI 610
V V+P+ +L+ + V L + Q QI + +
Sbjct: 67 LTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERL 126
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670
+ + LL +DE H + + Q+ + + L+AT
Sbjct: 127 MLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEY--AALGQLRQRFPTLPFMALTATA 184
Query: 671 PNY--EDVALFLRVN 683
+ +D+ L +N
Sbjct: 185 DDTTRQDIVRLLGLN 199
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 64.3 bits (156), Expect = 9e-12
Identities = 34/171 (19%), Positives = 70/171 (40%), Gaps = 12/171 (7%)
Query: 1327 LRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA 1385
L + + A+ +GF+ IQ +V + N + N++ A TGSGKT ++ +
Sbjct: 11 LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN 70
Query: 1386 SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAM--DLKLLEKGQIII 1443
+ + + D +++ ++ G A+ +K L+ I++
Sbjct: 71 NGIEAIILTPTRE----LAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVV 126
Query: 1444 STPEK-WDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMR 1492
TP + D ++R ++ V FI+DE + G +E I++
Sbjct: 127 GTPGRILDHINRGTLN---LKNVKYFILDEADEMLNMGFIKDVEKILNACN 174
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 59.3 bits (143), Expect = 5e-10
Identities = 38/186 (20%), Positives = 79/186 (42%), Gaps = 23/186 (12%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
KG + +Q +V L+ NI+ A TG+GKT + +++ ++
Sbjct: 22 KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIEL---------VNENNG 72
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEK- 607
+ + + P + L +V + + ++K+ ++ G + + Q ++ I+V TP +
Sbjct: 73 IEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRI 132
Query: 608 WDIITRKSGDRTYTQLVKLLIIDEIH-LLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666
D I R + + + VK I+DE +L+ +E I+ + +
Sbjct: 133 LDHINRGTLN---LKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRI-------LLF 182
Query: 667 SATLPN 672
SAT+P
Sbjct: 183 SATMPR 188
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 64.9 bits (157), Expect = 2e-11
Identities = 49/376 (13%), Positives = 88/376 (23%), Gaps = 103/376 (27%)
Query: 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566
++ GAGKT + I+++ + + +AP + + AE+
Sbjct: 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKR----------GLRTLILAPTRVVAAEM 54
Query: 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKL 626
L Y + + + + + + L
Sbjct: 55 EEALRGLPIRYQT--------PAIRAEHTGREIVDLMCHATFTMRLLSPIRVPN---YNL 103
Query: 627 LIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEK 686
+I+DE H SI AR + ++AT P D
Sbjct: 104 IIMDEAHFTDPA------SIAARGYISTRVEMGEAAGIFMTATPPGSRD----------- 146
Query: 687 GLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKET 746
F S P+ ++ I + + K + + FV S K
Sbjct: 147 ---PFPQSNAPIMDEEREIPERSWNSGHEWVTDF------------KGKTVWFVPSIKAG 191
Query: 747 AKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTR 806
A +R
Sbjct: 192 NDIAACLRK-------------------------------------NGKKVIQLSRKTFD 214
Query: 807 GDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQI-----YNPEKGAWTE--- 858
+ +V+T G N A VI + + E+
Sbjct: 215 SEYIKTR----TNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPM 270
Query: 859 -LSPLDIMQMLGRAGR 873
++ Q GR GR
Sbjct: 271 PVTHSSAAQRRGRVGR 286
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 49.1 bits (116), Expect = 3e-06
Identities = 21/130 (16%), Positives = 39/130 (30%), Gaps = 16/130 (12%)
Query: 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417
++ G+GKT AI+ ++A + G+ R + +AP +A E +
Sbjct: 10 RLTIMDLHPGAGKTKRYLPAIV---REAIKRGL-RTLILAPTRVVAAEMEEALRGLPIRY 65
Query: 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477
+ + + + R V +L I+DE H
Sbjct: 66 QTPAIRAEHTGREIV---------DLMCHA---TFTMRLLSPIRVPNYNLIIMDEAHFTD 113
Query: 1478 GQGGPVLEVI 1487
I
Sbjct: 114 PASIAARGYI 123
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 57.2 bits (137), Expect = 4e-09
Identities = 30/206 (14%), Positives = 61/206 (29%), Gaps = 20/206 (9%)
Query: 482 MPEWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRN 541
+ E+ + K + + +Q K L ++ APTG GKT+ + L
Sbjct: 30 LKEFVEFFRKCVGEPRAIQKMWAKRILRK-ESFAATAPTGVGKTSFGLAMSLFLA----- 83
Query: 542 DDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQII 601
+ + P LV + + + V L G + E+ +
Sbjct: 84 ------LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFM 137
Query: 602 VTTPEKWDIIT---RKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVA-----RTVRQ 653
+IT S + +D++ + V + + +
Sbjct: 138 QNLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTK 197
Query: 654 IETTKEHIRLVGLSATLPNYEDVALF 679
+ L+ +AT + LF
Sbjct: 198 SWVGEARGCLMVSTATAKKGKKAELF 223
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 49.9 bits (118), Expect = 9e-07
Identities = 30/198 (15%), Positives = 55/198 (27%), Gaps = 15/198 (7%)
Query: 1319 LQPLPVTALRNPLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAI 1378
L P L E + IQ + + APTG GKT
Sbjct: 21 LCLFPEDFLLKEFVEFFRKCVGEPRAIQKMWAKRILRKES-FAATAPTGVGKTSFGLAMS 79
Query: 1379 LRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEK 1438
L K R I P L + K+ + G+ L G + EK
Sbjct: 80 LFLALK-----GKRCYVIFPTSLLVIQAAETIR-KYAEKAGVGTENLIGYYHGRIPKREK 133
Query: 1439 GQIIISTPEK---WDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVS-----R 1490
+ + K + + +D++ I V +++
Sbjct: 134 ENFMQNLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYD 193
Query: 1491 MRYIASQVENKIRIVALS 1508
++ + E + ++ +
Sbjct: 194 LKTKSWVGEARGCLMVST 211
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 53.2 bits (126), Expect = 5e-08
Identities = 37/195 (18%), Positives = 74/195 (37%), Gaps = 18/195 (9%)
Query: 491 KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSN 550
+ + Q Q +Y + N L+ PTG GKT +A++ +L
Sbjct: 5 RDLIQPRIYQEVIYAKCKET--NCLIVLPTGLGKTLIAMMIAEYRL----------TKYG 52
Query: 551 YKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDI 610
K++ +AP K LV + + + K+ L+G+++ + + V I
Sbjct: 53 GKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTI 112
Query: 611 ITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670
R + V L++ DE H N R+ + ++ ++GL+A+
Sbjct: 113 ENDLLAGRISLEDVSLIVFDEAHRAVGNYAY------VFIAREYKRQAKNPLVIGLTASP 166
Query: 671 PNYEDVALFLRVNLE 685
+ + + + NL
Sbjct: 167 GSTPEKIMEVINNLG 181
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 47.5 bits (111), Expect = 4e-06
Identities = 36/179 (20%), Positives = 68/179 (37%), Gaps = 12/179 (6%)
Query: 1344 PIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403
Q ++ T N L+ PTG GKT+ A++ + ++ G + +AP + L
Sbjct: 12 IYQEVIYAKCKET--NCLIVLPTGLGKTLI---AMMIAEYRLTKYGGK-VLMLAPTKPLV 65
Query: 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQ 1463
+ + F ++V LTGE + + + + + + R ++
Sbjct: 66 LQHAESFRRLFN-LPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLE 124
Query: 1464 QVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIG 1522
VSL + DE H G V R Q +N + I ++ + + + E I
Sbjct: 125 DVSLIVFDEAHRAVGNYAYVF-----IAREYKRQAKNPLVIGLTASPGSTPEKIMEVIN 178
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 52.0 bits (123), Expect = 5e-08
Identities = 26/164 (15%), Positives = 43/164 (26%), Gaps = 27/164 (16%)
Query: 508 LSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVV 567
L +L GAGKT + IL + A R +
Sbjct: 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRV---------------- 47
Query: 568 GNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLL 627
+M + T + ++ + R +++
Sbjct: 48 ----VLSEMKEAFHGLDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNW-EVI 102
Query: 628 IIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671
I+DE H L SI AR + ++AT P
Sbjct: 103 IMDEAHFLDP------ASIAARGWAAHRARANESATILMTATPP 140
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 43.9 bits (102), Expect = 3e-05
Identities = 20/156 (12%), Positives = 41/156 (26%), Gaps = 22/156 (14%)
Query: 1353 LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412
+ ++ G+GKT IL + +R + +AP + E +
Sbjct: 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRR----LRTLVLAPTRVVLSEMKEAFHG 58
Query: 1413 KFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDE 1472
+ + L+ R + V + I+DE
Sbjct: 59 LDVKFHTQAFSAHGSGREVI------------DAMCHATLTYRMLEPTRVVNWEVIIMDE 106
Query: 1473 LHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALS 1508
H + R R N+ + ++
Sbjct: 107 AHFLDPASIAARGWAAHRARA------NESATILMT 136
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 47.2 bits (111), Expect = 2e-06
Identities = 24/156 (15%), Positives = 39/156 (25%), Gaps = 31/156 (19%)
Query: 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573
L APTG+GK+ Q YK++ + P A +S
Sbjct: 11 AHLHAPTGSGKSTKVPAAYAAQ--------------GYKVLVLNPSVAATLGFGAYMSKA 56
Query: 574 LQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIH 633
+ + T + + ++I DE H
Sbjct: 57 HGVDPNIRTGVRTITTGSPITYSTYGKFLADGGCSG------------GAYDIIICDECH 104
Query: 634 LLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSAT 669
+ TV T +V +AT
Sbjct: 105 STDATSILGI-----GTVLDQAETAGARLVVLATAT 135
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 39.5 bits (91), Expect = 7e-04
Identities = 20/154 (12%), Positives = 36/154 (23%), Gaps = 26/154 (16%)
Query: 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKF 1414
+ + APTGSGK+ A + + + P A
Sbjct: 6 QSFQVAHLHAPTGSGKSTKVPAAYAAQG--------YKVLVLNPSVAATLGFGAYMSKAH 57
Query: 1415 GQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELH 1474
G +R T T + G+ + I DE H
Sbjct: 58 GVDPNIRTGVRTITTGSPITYSTYGKF-------------LADGGCSGGAYDIIICDECH 104
Query: 1475 LIGGQGGPVLEVIVSRMRYIASQVENKIRIVALS 1508
+ ++ + +V +
Sbjct: 105 STDATSILGIGTVLDQAET-----AGARLVVLAT 133
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.5 bits (112), Expect = 5e-06
Identities = 35/169 (20%), Positives = 65/169 (38%), Gaps = 8/169 (4%)
Query: 1327 LRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA 1385
L L ++ GF+ + IQ + + D VL A +G+GKT F+I +
Sbjct: 17 LDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHD-VLAQAQSGTGKTGT--FSIAALQRID 73
Query: 1386 SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRV-VELTGETAMDLKLLEKGQIIIS 1444
+ +A+ +AP LA + + D + L QI++
Sbjct: 74 TSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVG 133
Query: 1445 TPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMR 1492
TP + +R + R ++ +FI+DE + G + I + +
Sbjct: 134 TPGRVFDNIQRRRFR--TDKIKMFILDEADEMLSSGFKEQIYQIFTLLP 180
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 46.8 bits (110), Expect = 1e-05
Identities = 27/177 (15%), Positives = 61/177 (34%), Gaps = 14/177 (7%)
Query: 1327 LRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRN---- 1381
L + + ++ PIQ + D ++ A TGSGKT I+ +
Sbjct: 28 LDPTIRNNILLASYQRPTPIQKNAIPAILEHRD-IMACAQTGSGKTAAFLIPIINHLVCQ 86
Query: 1382 ---HQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAM---DLKL 1435
Q+ S+T + + +AP LA + + + +R + G ++
Sbjct: 87 DLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS-LNTPLRSCVVYGGADTHSQIREV 145
Query: 1436 LEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492
++++TP + + K + + + ++ P + I+
Sbjct: 146 QMGCHLLVATPGRLVDFIEKNKI-SLEFCKYIVLDEADRMLDMGFEPQIRKIIEESN 201
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (107), Expect = 2e-05
Identities = 33/171 (19%), Positives = 67/171 (39%), Gaps = 11/171 (6%)
Query: 1327 LRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA 1385
LR L +Y GF+ + IQ + + D V+ + +G+GKT ++L+
Sbjct: 24 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRD-VIAQSQSGTGKTATFSISVLQCLDIQ 82
Query: 1386 SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQII 1442
+A+ +AP LA + + G + ++ G T + KL ++
Sbjct: 83 VRE--TQALILAPTRELAVQIQKGLL-ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVV 139
Query: 1443 ISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG-GPVLEVIVSRMR 1492
TP + + RR R ++ ++DE + +G + + +
Sbjct: 140 AGTPGRVFDMIRRRSLRTRAIKM--LVLDEADEMLNKGFKEQIYDVYRYLP 188
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (105), Expect = 4e-05
Identities = 40/171 (23%), Positives = 68/171 (39%), Gaps = 10/171 (5%)
Query: 1327 LRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA 1385
L L +Y GF+ + IQ + D V+ A +G+GKT FAI Q
Sbjct: 19 LSESLLRGIYAYGFEKPSAIQQRAILPCIKGYD-VIAQAQSGTGKTAT--FAISILQQIE 75
Query: 1386 SETGVMRAVYIAPLEALA---KERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEKGQII 1442
+ +A+ +AP LA ++ G + + +E II
Sbjct: 76 LDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHII 135
Query: 1443 ISTPEK-WDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492
+ TP + +D L+RR+ KY++ L DE+ G + + I ++
Sbjct: 136 VGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFK--DQIYDIFQKLN 184
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Score = 44.5 bits (104), Expect = 8e-05
Identities = 21/152 (13%), Positives = 54/152 (35%), Gaps = 22/152 (14%)
Query: 546 FNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTP 605
+ KI+ + P AL ++ + + ++++ G + + + ++V T
Sbjct: 153 LENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTW 212
Query: 606 EKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVG 665
+ ++ + +++ DE HL G + SI++ + G
Sbjct: 213 QTVVKQPKEWFSQ-----FGMMMNDECHLA---TGKSISSIISG------LNNCMFKF-G 257
Query: 666 LSATLPNYEDVALFLRVNLEKGLFYFDNSYRP 697
LS +L + + + F ++P
Sbjct: 258 LSGSLRDGKA----NIMQYV---GMFGEIFKP 282
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Score = 39.9 bits (92), Expect = 0.002
Identities = 20/129 (15%), Positives = 48/129 (37%), Gaps = 13/129 (10%)
Query: 1364 APTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV 1423
PT +G+++ + + + I P AL + D+ + + +
Sbjct: 135 LPTSAGRSLIQALLARYYLEN----YEGKILIIVPTTALTTQMADDF-VDYRLFSHAMIK 189
Query: 1424 ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPV 1483
++ G + D K +++ T + + +++ Q + + DE HL G
Sbjct: 190 KIGGGASKDDKYKNDAPVVVGTWQTV-----VKQPKEWFSQFGMMMNDECHLA---TGKS 241
Query: 1484 LEVIVSRMR 1492
+ I+S +
Sbjct: 242 ISSIISGLN 250
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 43.7 bits (102), Expect = 1e-04
Identities = 44/299 (14%), Positives = 101/299 (33%), Gaps = 47/299 (15%)
Query: 579 VKVRELSGDQTLTRQQIEET-QIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD 637
V+V +L R+ + E + + + ++ S D ++++ I +
Sbjct: 7 VRV-DLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKG 65
Query: 638 NRGPVLESIVARTVRQIETTKEHIRLVGLSA---TLPNYEDVALFLRVNLEKGLFYFDNS 694
N + ++ E + GLSA + + A K +F
Sbjct: 66 NHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRM 125
Query: 695 YRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIR 754
+ + L Q I + P + + ++ + + ++++F + R+ K +
Sbjct: 126 KKAISLLVQAKEIGLDHP--KMDKLKEII-REQLQRKQNSKIIVFTNYRETAKKIVNELV 182
Query: 755 DTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVED 814
++ K + G+++ +++L+ D
Sbjct: 183 KDGIKAKRF----------------VGQASK-------------ENDRGLSQREQKLILD 213
Query: 815 LFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGR 873
F G VLV+T+ G+++P +++ Y P S + +Q GR GR
Sbjct: 214 EFARGEFNVLVATSVGEEGLDVPEVDLVV----FYEPVP------SAIRSIQRRGRTGR 262
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.9 bits (97), Expect = 4e-04
Identities = 35/170 (20%), Positives = 67/170 (39%), Gaps = 9/170 (5%)
Query: 1327 LRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA 1385
L+ L ++ GF+ +PIQ + V D +L A G+GKT L +
Sbjct: 8 LKRELLMGIFEAGFEKPSPIQEEAIPVAITGRD-ILARAKNGTGKTAAFVIPTLEKVKP- 65
Query: 1386 SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQII 1442
+ ++A+ + P LA + + G+ G+ + TG T + L+L E I+
Sbjct: 66 -KLNKIQALIMVPTRELALQTSQVVRT-LGKHCGISCMVTTGGTNLRDDILRLNETVHIL 123
Query: 1443 ISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492
+ TP + K + + ++ ++E I+S +
Sbjct: 124 VGTPGRVLD-LASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP 172
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (96), Expect = 4e-04
Identities = 31/170 (18%), Positives = 69/170 (40%), Gaps = 8/170 (4%)
Query: 1327 LRNPLYEALY-QGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKA 1385
L+ L ++ G++ +PIQ + + + D +L A G+GK+ +L
Sbjct: 10 LKRELLMGIFEMGWEKPSPIQEESIPIALSGRD-ILARAKNGTGKSGAYLIPLLERLDLK 68
Query: 1386 SETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD---LKLLEKGQII 1442
+ ++A+ I P LA + + G +V+ TG T + ++L + ++
Sbjct: 69 KDN--IQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVV 126
Query: 1443 ISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMR 1492
I+TP + + K + + + L+ ++E I+ +
Sbjct: 127 IATPGRILD-LIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP 175
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2158 | |||
| d2q0zx1 | 176 | Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 | 100.0 | |
| d2q0zx1 | 176 | Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 | 99.96 | |
| d2q0zx2 | 114 | Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 | 99.96 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.94 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.94 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.92 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.92 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.92 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.92 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.91 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 99.91 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 99.91 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.91 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 99.91 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.9 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 99.9 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.9 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 99.9 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.9 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.9 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.9 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.89 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.87 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.87 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 99.86 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.85 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.84 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.79 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.78 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.78 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.78 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.77 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.76 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.75 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.75 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.74 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.73 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.72 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.72 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.72 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.72 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.7 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.69 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.68 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.68 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.67 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.67 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.65 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.65 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.63 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.62 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.59 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.56 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.54 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.54 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.5 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.49 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.48 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.47 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.47 | |
| d2p6ra1 | 85 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.46 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.45 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.45 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.45 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.43 | |
| d2p6ra1 | 85 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.42 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.41 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.38 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.38 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.33 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.32 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.31 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.28 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.25 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.24 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.21 | |
| d2p6ra2 | 198 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.19 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.17 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.15 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.02 | |
| d2p6ra2 | 198 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 98.85 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.85 | |
| d2q0zx2 | 114 | Protein pro2281 {Human (Homo sapiens) [TaxId: 9606 | 98.81 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.66 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.46 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.44 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.44 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.43 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.34 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.3 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.3 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.1 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 97.91 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 97.91 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 97.67 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 97.59 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 97.35 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 97.04 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 96.96 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 96.89 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 96.68 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 96.48 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 96.46 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 96.23 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 96.01 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 95.96 | |
| d2i1qa1 | 60 | DNA repair protein Rad51, N-terminal domain {Archa | 95.58 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.2 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 95.17 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 95.16 | |
| d1pzna1 | 61 | DNA repair protein Rad51, N-terminal domain {Archa | 94.98 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 94.85 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 94.55 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 94.21 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.93 | |
| d2i1qa1 | 60 | DNA repair protein Rad51, N-terminal domain {Archa | 93.81 | |
| d2a1ja1 | 62 | DNA repair endonuclease XPF {Human (Homo sapiens) | 93.71 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.4 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.35 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.28 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.21 | |
| d2a1ja1 | 62 | DNA repair endonuclease XPF {Human (Homo sapiens) | 93.2 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 93.04 | |
| d1szpa1 | 64 | DNA repair protein Rad51, N-terminal domain {Baker | 92.97 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.9 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 92.78 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 92.75 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.2 | |
| d1pzna1 | 61 | DNA repair protein Rad51, N-terminal domain {Archa | 91.98 | |
| d1kfta_ | 56 | Excinuclease UvrC C-terminal domain {Escherichia c | 91.96 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.89 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 91.75 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 91.68 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 90.94 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 90.78 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 90.23 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 89.67 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 89.46 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 89.17 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 89.09 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 89.08 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 88.75 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 87.77 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 87.58 | |
| d1b22a_ | 70 | DNA repair protein Rad51, N-terminal domain {Human | 87.22 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 87.09 | |
| d2bgwa1 | 70 | DNA repair endonuclease XPF {Aeropyrum pernix [Tax | 86.47 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 86.46 | |
| d1kfta_ | 56 | Excinuclease UvrC C-terminal domain {Escherichia c | 86.13 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 85.78 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 85.38 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 85.18 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 83.89 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 82.86 | |
| d1szpa1 | 64 | DNA repair protein Rad51, N-terminal domain {Baker | 82.05 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 81.58 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 81.2 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 81.12 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 80.12 |
| >d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Sec63 N-terminal domain-like superfamily: Sec63 N-terminal domain-like family: Sec63 N-terminal domain domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.3e-33 Score=306.09 Aligned_cols=176 Identities=55% Similarity=0.950 Sum_probs=171.7
Q ss_pred CCHHHHHHHHhcCccccCCCCCcchHHHHHHHhhcCccccCCCCCCChHHHHHHHHHHHhcCCCCCCCchhhHHHHHHHH
Q 000114 1859 TRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFENPKFTDPHVKANALLQAHFSRQQVGGNLKLDQEEVLLSA 1938 (2158)
Q Consensus 1859 ~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~~~~~~~~~~K~~lLLqAhlsR~~lp~~l~~D~~~Il~~~ 1938 (2158)
|++++||++||.|.||+++|+|++|+..+++|.+.+|++++.+.+++|+.|+++||||||+|.++|.+|..|+.+|++++
T Consensus 1 t~~k~lL~~ls~a~EF~~i~vR~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~~~Llqa~l~r~~l~~sl~~D~~~I~~~~ 80 (176)
T d2q0zx1 1 TKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKA 80 (176)
T ss_dssp CCHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHHSSSCCSSCCTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhCcHhhccCCCCccHHHHHHHHHHhCCCCCcccccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999988878999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHH
Q 000114 1939 SRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERREL 2018 (2158)
Q Consensus 1939 ~rLl~a~vdi~~~~g~l~~~l~~m~L~q~i~Q~~w~~~s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~l 2018 (2158)
+||++||+|++..+||+.+++++++|+|||+||+|++++||+|||||+++.++++.++| +.|+.+|.++++++++.+
T Consensus 81 ~Rll~al~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~L~Qlp~~~~~~~~kl~~~~---i~sl~~l~~~~~~e~~~l 157 (176)
T d2q0zx1 81 IRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKG---VESVFDIMEMEDEERNAL 157 (176)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTTSCGGGGSTTCCHHHHHHHHHTT---CCSHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCCCccCCCcCCHHHHHHHHHCC---CCCHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred hCCChHHHHHHHHHHccCC
Q 000114 2019 LQMSDVQLLDIARFCNRFP 2037 (2158)
Q Consensus 2019 l~~~~~~~~~v~~~~~~~P 2037 (2158)
+++++.++++|.++|+.||
T Consensus 158 l~~~~~~~~~i~~~~~~~P 176 (176)
T d2q0zx1 158 LQLTDSQIADVARFCNRYP 176 (176)
T ss_dssp HCCCHHHHHHHHHHHTTSC
T ss_pred HcCCHHHHHHHHHHHHhCc
Confidence 9999999999999999999
|
| >d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Sec63 N-terminal domain-like superfamily: Sec63 N-terminal domain-like family: Sec63 N-terminal domain domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.8e-29 Score=276.83 Aligned_cols=172 Identities=26% Similarity=0.428 Sum_probs=164.8
Q ss_pred CHHHHHHHhhCCccCCCCcCChhHHHHHHHHhhcCCCCCCCC-CCChhHHHHHHHHHHHcCCCCCCCcccchHHHHHHHH
Q 000114 1025 GDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKES-LEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSA 1103 (2158)
Q Consensus 1025 ~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l~~~~~~~~~~~-~~~~~~K~~~llq~~i~~~~~~~~~l~~d~~~i~~~a 1103 (2158)
...++|+++|.|.||.++++|++|+.+|.+|..++|+|++++ +++|+.|+++||||||+|++++ .+|.+|+.||+++|
T Consensus 2 ~~k~lL~~ls~a~EF~~i~vR~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~~~Llqa~l~r~~l~-~sl~~D~~~I~~~~ 80 (176)
T d2q0zx1 2 KVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLS-AELQSDTEEILSKA 80 (176)
T ss_dssp CHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHHSSSCCSSCCTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhCcHhhccCCCCccHHHHHHHHHHhCCCCCcccccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999875 7899999999999999999996 69999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCCccccCCCCHHHHHHHHhCCC-CchhhccCChHHhhhhhc-
Q 000114 1104 GRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIR- 1181 (2158)
Q Consensus 1104 ~ri~~a~~ei~~~~~~~~~~~~~~~l~~~v~~~~w~~~~~l~q~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~- 1181 (2158)
.||++||+|||..+||+..+..+++|||||+|++|++.+||+|||+++++.++++.++|+ +++++.+++++|++.+++
T Consensus 81 ~Rll~al~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~L~Qlp~~~~~~~~kl~~~~i~sl~~l~~~~~~e~~~ll~~ 160 (176)
T d2q0zx1 81 IRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQL 160 (176)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTTSCGGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCCCccCCCcCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999999998 799999999999999998
Q ss_pred CchhHHHHHHHHhcCC
Q 000114 1182 FPKMGRTLHKFVHQFP 1197 (2158)
Q Consensus 1182 ~~~~~~~i~~~~~~~P 1197 (2158)
.++.++.|.++++.||
T Consensus 161 ~~~~~~~i~~~~~~~P 176 (176)
T d2q0zx1 161 TDSQIADVARFCNRYP 176 (176)
T ss_dssp CHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHhCc
Confidence 5788999999999999
|
| >d2q0zx2 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: Sec63 C-terminal domain-like domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.9e-29 Score=248.71 Aligned_cols=114 Identities=56% Similarity=1.068 Sum_probs=107.2
Q ss_pred ceEEEEEEeccccccCCCeEEEEEEEEEcCCCCcccCccccCCCCCCccccEEEEEEECCCCeEEEEEEeecccceEEEE
Q 000114 2038 NIDMSFEVQDSENVRAGEDITLQVVLERDLEGRTEVGPVYSNRYPKAKEEGWWLVVGDTKTNQLLAIKRVSLQRKSRVKL 2117 (2158)
Q Consensus 2038 ~i~v~~~v~~~~~v~~g~~~~l~v~l~r~~~~~~~~~~v~ap~fp~~k~e~Wwlvvgd~~~~~L~~~krv~~~~~~~~~l 2117 (2158)
+|+|++++.+++.+.+|++++|+|+|+|+++ ..++||||+||++|.|+||++|||.++|+|+++||+++.+..++++
T Consensus 1 ni~~~~~v~d~~~v~~g~~~~l~V~l~R~~~---~~~~v~aP~fP~~K~E~Wwivlgd~~~~~L~~~krv~~~~~~~~~l 77 (114)
T d2q0zx2 1 NIELSYEVVDKDSIRSGGPVVVLVQLEREEE---VTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKL 77 (114)
T ss_dssp CEEEEEEETTGGGCBTTSEEEEEEEEEECSS---CCSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEEEECCSSEEEEEE
T ss_pred CceEEEEEcCCcceecCCeEEEEEEEEEcCC---cCCcEECCCCCCCCcccEEEEEEECCCCEEEEEeEeccccceEEEE
Confidence 5899999999999999999999999999652 3468999999999999999999999999999999999999899999
Q ss_pred EEEecCCCCceEEEEEEEeCCccccCcEEEEEEEeecC
Q 000114 2118 DFAAPAEAGKKTYTLYFMCDSYMGCDQEYAFTVDVKEA 2155 (2158)
Q Consensus 2118 ~f~~P~~~G~~~~~l~~~sDsY~G~D~~~~~~l~V~~~ 2155 (2158)
+|.+| .+|+|+|+||+|||||+||||+++|+|+|.+|
T Consensus 78 ~f~~p-~~G~~~~~l~~~sDsY~G~D~~~~~~~~V~eA 114 (114)
T d2q0zx2 78 DFVAP-ATGAHNYTLYFMSDAYMGCDQEYKFSVDVKEA 114 (114)
T ss_dssp EEECC-SSEEEEEEEEEEESSCSSCCEEEEEEEEEBCC
T ss_pred EEeCC-CCCeEEEEEEEEcccccccceEEEEEEEeecC
Confidence 99999 47999999999999999999999999999986
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.94 E-value=2e-27 Score=288.71 Aligned_cols=285 Identities=16% Similarity=0.128 Sum_probs=182.7
Q ss_pred HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeC
Q 000114 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSG 586 (2158)
Q Consensus 507 ~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~G 586 (2158)
++..++++|+.||||||||++|+.+++...... +.++||++||++||.|++++|+..... +....+
T Consensus 5 ~~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~----------~~~~lvi~Ptr~La~q~~~~l~~~~~~----~~~~~~ 70 (305)
T d2bmfa2 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKR----------GLRTLILAPTRVVAAEMEEALRGLPIR----YQTPAI 70 (305)
T ss_dssp SSSTTCEEEECCCTTSSTTTTHHHHHHHHHHHH----------TCCEEEEESSHHHHHHHHHHTTTSCCB----CCC---
T ss_pred HhhcCCcEEEEECCCCCHHHHHHHHHHHHHHhc----------CCEEEEEccHHHHHHHHHHHHhcCCcc----eeeeEE
Confidence 456678899999999999999988888766543 237999999999999999888764322 111111
Q ss_pred CCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEE
Q 000114 587 DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666 (2158)
Q Consensus 587 d~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~l 666 (2158)
+ ........|+++||+.+...... ...+.++++|||||+|++.+.. ..+..++... ......+++++
T Consensus 71 ~----~~~~~~~~i~~~t~~~l~~~~~~---~~~~~~~~~vViDE~H~~~~~~-~~~~~~l~~~-----~~~~~~~~v~~ 137 (305)
T d2bmfa2 71 R----AEHTGREIVDLMCHATFTMRLLS---PIRVPNYNLIIMDEAHFTDPAS-IAARGYISTR-----VEMGEAAGIFM 137 (305)
T ss_dssp ---------CCCSEEEEEHHHHHHHHTS---SSCCCCCSEEEEESTTCCSHHH-HHHHHHHHHH-----HHHTSCEEEEE
T ss_pred e----ecccCccccccCCcHHHHHHHhc---CccccceeEEEeeeeeecchhh-HHHHHHHHHh-----hccccceEEEe
Confidence 1 11224578999999976444332 2456789999999999885422 1222222222 12457899999
Q ss_pred ccccCChHHHHHHHhccccCceEEecCCcccccceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHH
Q 000114 667 SATLPNYEDVALFLRVNLEKGLFYFDNSYRPVPLSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKET 746 (2158)
Q Consensus 667 SATlpn~~dv~~~l~~~~~~~~~~f~~~~rpv~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~ 746 (2158)
|||+|+... .+.....|+ ......+......... ..+ ...+++++|||++++++
T Consensus 138 SAT~~~~~~--------------~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~--~~~~~~~lvf~~~~~~~ 191 (305)
T d2bmfa2 138 TATPPGSRD--------------PFPQSNAPI--MDEEREIPERSWNSGH--------EWV--TDFKGKTVWFVPSIKAG 191 (305)
T ss_dssp CSSCTTCCC--------------SSCCCSSCE--EEEECCCCCSCCSSCC--------HHH--HSSCSCEEEECSCHHHH
T ss_pred ecCCCccee--------------eecccCCcc--eEEEEeccHHHHHHHH--------HHH--HhhCCCEEEEeccHHHH
Confidence 999874211 011111111 1111111111100000 011 12367899999999999
Q ss_pred HHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEe
Q 000114 747 AKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVS 826 (2158)
Q Consensus 747 ~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVa 826 (2158)
+.++..|.+.+.. +..+||++....| ..|++|..+++||
T Consensus 192 ~~l~~~L~~~~~~-------------------------------------~~~l~~~~~~~~~----~~~~~~~~~~lva 230 (305)
T d2bmfa2 192 NDIAACLRKNGKK-------------------------------------VIQLSRKTFDSEY----IKTRTNDWDFVVT 230 (305)
T ss_dssp HHHHHHHHHHTCC-------------------------------------CEECCTTCHHHHG----GGGGTSCCSEEEE
T ss_pred HHHHHHHHhCCCC-------------------------------------EEEeCCcChHHHH----hhhhccchhhhhh
Confidence 9999999876532 3455999865544 4688999999999
Q ss_pred chhhhhccCCCceEEEEec-----ccccCCCCC----ccccCCHHHHHHhhcccCCCCCCCccEEEEEcC
Q 000114 827 TATLAWGVNLPAHTVIIKG-----TQIYNPEKG----AWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887 (2158)
Q Consensus 827 T~tla~GVdlP~v~vVI~~-----~~~yd~~~g----~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~ 887 (2158)
|+++++|+|++...||..+ ...|+++.+ ...++|..+|+||+|||||.|.+ |.+.+++.
T Consensus 231 T~~~~~G~~~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~--~~~~~~~~ 298 (305)
T d2bmfa2 231 TDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKN--ENDQYIYM 298 (305)
T ss_dssp CGGGGTTCCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSC--CCEEEEEC
T ss_pred hHHHHhcCCCCccEEEEcCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCCCC--ceEEEEEC
Confidence 9999999999866554222 222555543 12467999999999999998844 44444433
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.94 E-value=1.8e-26 Score=280.33 Aligned_cols=276 Identities=16% Similarity=0.108 Sum_probs=180.8
Q ss_pred HhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchh
Q 000114 1353 LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD 1432 (2158)
Q Consensus 1353 l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~ 1432 (2158)
++..+++++|.||||||||++|+.+++...... +. +++|++||++||.|+++++++ ++ ..+....+ .
T Consensus 5 ~~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~--~~--~~lvi~Ptr~La~q~~~~l~~-~~----~~~~~~~~----~ 71 (305)
T d2bmfa2 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKR--GL--RTLILAPTRVVAAEMEEALRG-LP----IRYQTPAI----R 71 (305)
T ss_dssp SSSTTCEEEECCCTTSSTTTTHHHHHHHHHHHH--TC--CEEEEESSHHHHHHHHHHTTT-SC----CBCCC--------
T ss_pred HhhcCCcEEEEECCCCCHHHHHHHHHHHHHHhc--CC--EEEEEccHHHHHHHHHHHHhc-CC----cceeeeEE----e
Confidence 345678899999999999999988888776652 33 899999999999999887763 21 11111111 1
Q ss_pred hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCC
Q 000114 1433 LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2158)
Q Consensus 1433 ~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~ 1512 (2158)
...-....|+++||+.+..... ....+++++++|+||+|++..+. ..+..++ ..+.. ..+.+++++|||++
T Consensus 72 ~~~~~~~~i~~~t~~~l~~~~~---~~~~~~~~~~vViDE~H~~~~~~-~~~~~~l---~~~~~--~~~~~~v~~SAT~~ 142 (305)
T d2bmfa2 72 AEHTGREIVDLMCHATFTMRLL---SPIRVPNYNLIIMDEAHFTDPAS-IAARGYI---STRVE--MGEAAGIFMTATPP 142 (305)
T ss_dssp ----CCCSEEEEEHHHHHHHHT---SSSCCCCCSEEEEESTTCCSHHH-HHHHHHH---HHHHH--HTSCEEEEECSSCT
T ss_pred ecccCccccccCCcHHHHHHHh---cCccccceeEEEeeeeeecchhh-HHHHHHH---HHhhc--cccceEEEeecCCC
Confidence 1112345899999998765433 34567899999999999886432 1222222 22211 35789999999986
Q ss_pred ChHHHHHHhccCCCceEecCCCCcccccEEEEecccccchHHHHHhcChHHHHHHHHhHhcCCCEEEEecChHHHHHHHH
Q 000114 1513 NAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGVDITNFEARMQAMTKPTFTAIVQHAKNEKPALVFVPSRKYVRLTAV 1592 (2158)
Q Consensus 1513 n~~dl~~wl~~~~~~i~~f~~~~rpv~l~~~i~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~ 1592 (2158)
.... .+.. +..++............ ..... ......+++||||+++++|+.++.
T Consensus 143 ~~~~-------------~~~~--~~~~~~~~~~~~~~~~~--------~~~~~---~~~~~~~~~lvf~~~~~~~~~l~~ 196 (305)
T d2bmfa2 143 GSRD-------------PFPQ--SNAPIMDEEREIPERSW--------NSGHE---WVTDFKGKTVWFVPSIKAGNDIAA 196 (305)
T ss_dssp TCCC-------------SSCC--CSSCEEEEECCCCCSCC--------SSCCH---HHHSSCSCEEEECSCHHHHHHHHH
T ss_pred ccee-------------eecc--cCCcceEEEEeccHHHH--------HHHHH---HHHhhCCCEEEEeccHHHHHHHHH
Confidence 5311 0111 11122222111111110 00011 112457889999999999999987
Q ss_pred HHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHHHHHcCCceEEEecCccccc
Q 000114 1593 DLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSALFEAGKIKVCVMSSSMCWG 1672 (2158)
Q Consensus 1593 ~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~G 1672 (2158)
.|.. .+..+..+||+++...| ..|++|..+++|||+++++|
T Consensus 197 ~L~~-----------------------------------~~~~~~~l~~~~~~~~~----~~~~~~~~~~lvaT~~~~~G 237 (305)
T d2bmfa2 197 CLRK-----------------------------------NGKKVIQLSRKTFDSEY----IKTRTNDWDFVVTTDISEMG 237 (305)
T ss_dssp HHHH-----------------------------------HTCCCEECCTTCHHHHG----GGGGTSCCSEEEECGGGGTT
T ss_pred HHHh-----------------------------------CCCCEEEeCCcChHHHH----hhhhccchhhhhhhHHHHhc
Confidence 6632 23457889999876554 46789999999999999999
Q ss_pred cCCCccEEEEecc-----eeecCCCC----cCcCCCHHHHHHhhccCCCCCC
Q 000114 1673 VPLTAHLVVVMGT-----QYYDGQEN----AHTDYPVTDLLQMMGHASRPLL 1715 (2158)
Q Consensus 1673 vdlp~~~vVI~gt-----~~yd~~~~----~~~~~s~~~~lQr~GRaGR~g~ 1715 (2158)
+|++...||..|. ..|++..+ ...|.|..+|+||+|||||.|.
T Consensus 238 ~~~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~ 289 (305)
T d2bmfa2 238 ANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPK 289 (305)
T ss_dssp CCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSS
T ss_pred CCCCccEEEEcCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCCC
Confidence 9999888775443 23454421 2357799999999999999873
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.92 E-value=1.8e-25 Score=251.84 Aligned_cols=167 Identities=25% Similarity=0.408 Sum_probs=137.1
Q ss_pred HHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCH
Q 000114 1566 AIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNK 1645 (2158)
Q Consensus 1566 ~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~ 1645 (2158)
.+...+.+++|+||||+||++|+.+|..|............ + ...+........+..|.+++.+||++|||||++
T Consensus 32 l~~~~i~~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~ 106 (201)
T d2p6ra4 32 LVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEG-L----EKAILEENEGEMSRKLAECVRKGAAFHHAGLLN 106 (201)
T ss_dssp HHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSS-H----HHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCH
T ss_pred HHHHHHHcCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhH-H----HHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhh
Confidence 34455577899999999999999999999876543322111 0 011111122335677999999999999999999
Q ss_pred HHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEe
Q 000114 1646 TDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILC 1725 (2158)
Q Consensus 1646 ~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~ 1725 (2158)
++|..++++|++|.++|||||+++++|||+|++.|||+++++||+.. .++++.+|+||+|||||+|.|..|.+++++
T Consensus 107 ~~r~~ie~~f~~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~---~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~ 183 (201)
T d2p6ra4 107 GQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYS---KRIKVSEYKQMAGRAGRPGMDERGEAIIIV 183 (201)
T ss_dssp HHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSE---EECCHHHHHHHHTTBSCTTTCSCEEEEEEC
T ss_pred hhHHHHHHHHhCCCceEEEechHHHhhcCCCCceEEEecceeccCCc---CCCCHHHHHHHhcccCCCCCCCeeEEEEEe
Confidence 99999999999999999999999999999999999999999998754 578999999999999999999999999999
Q ss_pred cCChHH-HHHHHhh-CC
Q 000114 1726 HAPRKE-YYKKFLY-DA 1740 (2158)
Q Consensus 1726 ~~~~~~-~~~k~l~-~~ 1740 (2158)
...+++ ++++|+. +|
T Consensus 184 ~~~~~~~~~k~~~~~~p 200 (201)
T d2p6ra4 184 GKRDREIAVKRYIFGEP 200 (201)
T ss_dssp CGGGHHHHHHTTTSSCC
T ss_pred CCCChHHHHHHHhccCC
Confidence 988766 5777776 44
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=6.6e-25 Score=250.84 Aligned_cols=184 Identities=17% Similarity=0.253 Sum_probs=150.2
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++.+..++ .||+.|+|+|++++|.++.++ |++++||||||||++|++|+++.+.... ..+++++++||
T Consensus 24 L~~~l~~~L~~~g~~~pt~IQ~~aIp~il~g~-dvi~~a~TGSGKTlayllPil~~l~~~~--------~~~~~lil~Pt 94 (222)
T d2j0sa1 24 LREDLLRGIYAYGFEKPSAIQQRAIKQIIKGR-DVIAQSQSGTGKTATFSISVLQCLDIQV--------RETQALILAPT 94 (222)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTC-CEEEECCTTSSHHHHHHHHHHHTCCTTS--------CSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC-CeEEEcCcchhhhhhhcccccccccccc--------cCceeEEecch
Confidence 567777666 699999999999999999875 5999999999999999999999875432 35689999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
++||.|+++.+.++.+..++++..+.|+....... ..+++|+|+||+++..+.++.. ..+++++++|+||||.+.
T Consensus 95 reLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~~~--~~~~~l~~lVlDEaD~ll 172 (222)
T d2j0sa1 95 RELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS--LRTRAIKMLVLDEADEML 172 (222)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTS--SCCTTCCEEEEETHHHHT
T ss_pred HHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccccc--cccccceeeeecchhHhh
Confidence 99999999999998888899999999998766543 3578999999999844433332 467889999999999998
Q ss_pred c-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcccc
Q 000114 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLE 685 (2158)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~ 685 (2158)
+ ++++.++.|+.. .+...|++++|||+| .++.++.+....
T Consensus 173 ~~~f~~~i~~I~~~-------l~~~~Q~ilfSAT~~--~~v~~l~~~~l~ 213 (222)
T d2j0sa1 173 NKGFKEQIYDVYRY-------LPPATQVVLISATLP--HEILEMTNKFMT 213 (222)
T ss_dssp STTTHHHHHHHHTT-------SCTTCEEEEEESCCC--HHHHTTGGGTCS
T ss_pred hcCcHHHHHHHHHh-------CCCCCEEEEEEEeCC--HHHHHHHHHHCC
Confidence 8 587777766554 467889999999998 456666554433
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.92 E-value=4.7e-25 Score=248.37 Aligned_cols=158 Identities=32% Similarity=0.459 Sum_probs=132.3
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHH
Q 000114 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2158)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v 812 (2158)
++|+||||+||+.|+.+|..|.......... ......+........+..|.+++.+||++|||||++.+|..+
T Consensus 40 ~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~r~~i 112 (201)
T d2p6ra4 40 NGGVLVFESTRRGAEKTAVKLSAITAKYVEN-------EGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVV 112 (201)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCC-------SSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHH
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHHHhhhch-------hHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhhHHHH
Confidence 7899999999999999999998865432211 112223333344455677999999999999999999999999
Q ss_pred HHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHH
Q 000114 813 EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (2158)
Q Consensus 813 ~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~ 892 (2158)
++.|++|.++|||||++++||||+|+++|||++++.||.. -.+++..+|+||+|||||+|.|..|.+++++...+..
T Consensus 113 e~~f~~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~---~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~~~~ 189 (201)
T d2p6ra4 113 EDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGY---SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDRE 189 (201)
T ss_dssp HHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSS---EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHH
T ss_pred HHHHhCCCceEEEechHHHhhcCCCCceEEEecceeccCC---cCCCCHHHHHHHhcccCCCCCCCeeEEEEEeCCCChH
Confidence 9999999999999999999999999999999999988754 2568999999999999999999999999999998776
Q ss_pred H-HHHhhcC
Q 000114 893 Y-YLSLMNQ 900 (2158)
Q Consensus 893 ~-y~~ll~~ 900 (2158)
. +++++..
T Consensus 190 ~~~k~~~~~ 198 (201)
T d2p6ra4 190 IAVKRYIFG 198 (201)
T ss_dssp HHHHTTTSS
T ss_pred HHHHHHhcc
Confidence 5 5666553
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.5e-24 Score=247.96 Aligned_cols=182 Identities=19% Similarity=0.317 Sum_probs=149.7
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
.|+....+++.. ||..|+|+|.++++.++++. |+++.||||||||++|++|+++++.... ..+++++++||++||.
T Consensus 23 ~L~~~l~~~L~~~g~~~pt~IQ~~aIp~il~g~-dvi~~a~TGSGKTlayllPil~~l~~~~--~~~~~lil~PtreLa~ 99 (222)
T d2j0sa1 23 GLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGR-DVIAQSQSGTGKTATFSISVLQCLDIQV--RETQALILAPTRELAV 99 (222)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTC-CEEEECCTTSSHHHHHHHHHHHTCCTTS--CSCCEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCC-CeEEEcCcchhhhhhhcccccccccccc--cCceeEEecchHHHHH
Confidence 466677788876 89999999999999999854 5999999999999999999999887633 3358999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCC
Q 000114 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g 1481 (2158)
|+++.++ .++...++++..+.|+..... .....++|+|+||+++..+.+. ....+++++++|+||||.+.+.+
T Consensus 100 Qi~~~~~-~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~--~~~~~~~l~~lVlDEaD~ll~~~- 175 (222)
T d2j0sa1 100 QIQKGLL-ALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR--RSLRTRAIKMLVLDEADEMLNKG- 175 (222)
T ss_dssp HHHHHHH-HHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEETHHHHTSTT-
T ss_pred HHHHHHH-HHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccc--cccccccceeeeecchhHhhhcC-
Confidence 9999998 787777899999999876542 2334679999999999888766 34568999999999999998764
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HHHHH
Q 000114 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGE 1519 (2158)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~dl~~ 1519 (2158)
+...+..+...+++..|++++|||+++. .++++
T Consensus 176 -----f~~~i~~I~~~l~~~~Q~ilfSAT~~~~v~~l~~ 209 (222)
T d2j0sa1 176 -----FKEQIYDVYRYLPPATQVVLISATLPHEILEMTN 209 (222)
T ss_dssp -----THHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGG
T ss_pred -----cHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHH
Confidence 3455666667778899999999999752 34443
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.91 E-value=1.7e-24 Score=246.45 Aligned_cols=179 Identities=22% Similarity=0.347 Sum_probs=147.8
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
||+.+.+++ .||.+|+|+|+++++.++.++.|++++||||+|||++|++|+++..... .+++++|++|+
T Consensus 11 l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~~---------~~~~~lil~pt 81 (208)
T d1hv8a1 11 LSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN---------NGIEAIILTPT 81 (208)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS---------SSCCEEEECSC
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeecccccccccc---------cCcceEEEeec
Confidence 677777777 6999999999999999999887899999999999999999999875432 45689999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHh--hhccccEEEcchhHH-HHHHhccCCCccccccceEEeecccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKW-DIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPekl-d~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
++||.|+.+.+..+....+.++..++|+.+...+ ...+++|+|+||+++ +.+.++. ..+++++++||||||.+.
T Consensus 82 ~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~IlV~TP~~l~~~l~~~~---~~~~~l~~lViDEad~l~ 158 (208)
T d1hv8a1 82 RELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGT---LNLKNVKYFILDEADEML 158 (208)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTC---SCTTSCCEEEEETHHHHH
T ss_pred cccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhcCCCCEEEEChHHHHHHHHcCC---CCcccCcEEEEEChHHhh
Confidence 9999999999999988889999999998876543 346799999999997 5554443 357889999999999887
Q ss_pred c-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHh
Q 000114 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLR 681 (2158)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~ 681 (2158)
+ +++..++.|+.. .+++.|++++|||+|+ ++.++.+
T Consensus 159 ~~~~~~~i~~I~~~-------~~~~~Q~i~~SAT~~~--~v~~~~~ 195 (208)
T d1hv8a1 159 NMGFIKDVEKILNA-------CNKDKRILLFSATMPR--EILNLAK 195 (208)
T ss_dssp TTTTHHHHHHHHHT-------SCSSCEEEEECSSCCH--HHHHHHH
T ss_pred cCCChHHHHHHHHh-------CCCCCeEEEEEccCCH--HHHHHHH
Confidence 6 577777666543 4678999999999984 4444443
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.5e-24 Score=245.92 Aligned_cols=186 Identities=20% Similarity=0.281 Sum_probs=148.0
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++.+..++ .||++|+++|++++|.++.+++ ++++||||||||++|++|+++.+... ..++++++++||
T Consensus 19 L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~d-vl~~a~TGsGKTlayllp~l~~i~~~--------~~~~~alil~Pt 89 (218)
T d2g9na1 19 LSESLLRGIYAYGFEKPSAIQQRAILPCIKGYD-VIAQAQSGTGKTATFAISILQQIELD--------LKATQALVLAPT 89 (218)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCC-EEEECCTTSSHHHHHHHHHHHHCCTT--------CCSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCC-EEEEcccchhhhhhhhhhhhheeccc--------ccCccEEEEccc
Confidence 677777766 6999999999999999998855 99999999999999999999998543 246789999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh----hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
++||.|+++.+.......++.+..+.|+....... ...++|+|+||+++..+.++.. ..+++++++|+||||.+
T Consensus 90 ~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~~~--~~~~~l~~lVlDEaD~l 167 (218)
T d2g9na1 90 RELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRY--LSPKYIKMFVLDEADEM 167 (218)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHTTS--SCSTTCCEEEEESHHHH
T ss_pred chhhhhHHHHHhhhccccceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhcCC--cccccceEEEeeecchh
Confidence 99999999999999888888888888866544432 3468999999999844444332 56788999999999999
Q ss_pred cc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCc
Q 000114 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG 687 (2158)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~ 687 (2158)
.+ +++..++.|+.. .+.+.|++++|||+|+ ++..+.+.....+
T Consensus 168 l~~~f~~~~~~Il~~-------~~~~~Q~il~SAT~~~--~v~~~~~~~l~~p 211 (218)
T d2g9na1 168 LSRGFKDQIYDIFQK-------LNSNTQVVLLSATMPS--DVLEVTKKFMRDP 211 (218)
T ss_dssp HHTTCHHHHHHHHHH-------SCTTCEEEEEESCCCH--HHHHHHHHHCSSC
T ss_pred hcCchHHHHHHHHHh-------CCCCCeEEEEEecCCH--HHHHHHHHHCCCC
Confidence 88 578777776554 3667999999999984 5655555443333
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=99.91 E-value=2.4e-24 Score=249.78 Aligned_cols=198 Identities=17% Similarity=0.228 Sum_probs=153.0
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCC-CCCCCCCcEEEEEcc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDD-GSFNHSNYKIVYVAP 558 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~-~~~~~~~~kil~iaP 558 (2158)
|++++++++ .||++|+|+|++++|.++++. |++++||||||||++|++|+++.+....... ......++++++++|
T Consensus 28 l~~~l~~~L~~~g~~~pt~iQ~~~ip~il~g~-dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~~~~alil~p 106 (238)
T d1wrba1 28 LDPTIRNNILLASYQRPTPIQKNAIPAILEHR-DIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAP 106 (238)
T ss_dssp CCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTC-CEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHhhhhhCCC-CEEEECCCCCCcceeeHHHHHHHHHhcccccccccCCCCceEEEecc
Confidence 567777766 699999999999999999875 5999999999999999999999987542211 122345678999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
+++||.|+++.+.......++++..++|+.....+. ...++|+|+||+++..+.+... ..+.+++++|+||||.+
T Consensus 107 t~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~~~--~~l~~v~~lViDEaD~l 184 (238)
T d1wrba1 107 TRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNK--ISLEFCKYIVLDEADRM 184 (238)
T ss_dssp SHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTS--BCCTTCCEEEEETHHHH
T ss_pred chhhhcchheeeeecccCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHccCc--eeccccceeeeehhhhh
Confidence 999999999999998888899999999988765432 4578999999999955555443 45789999999999988
Q ss_pred cc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccccCc
Q 000114 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLEKG 687 (2158)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~~~ 687 (2158)
.+ ++++.++.|+.++. .....+.|++++|||+| .++..+.+.....+
T Consensus 185 l~~~f~~~i~~Il~~~~---~~~~~~~Q~il~SAT~~--~~v~~l~~~~~~~p 232 (238)
T d1wrba1 185 LDMGFEPQIRKIIEESN---MPSGINRQTLMFSATFP--KEIQKLAADFLYNY 232 (238)
T ss_dssp HHTTCHHHHHHHHHSSC---CCCGGGCEEEEEESSCC--HHHHHHHHHHCSSC
T ss_pred hhhccHHHHHHHHHHhc---CCCCCCCEEEEEeeeCC--HHHHHHHHHHCCCC
Confidence 77 68888877765431 11234679999999998 45555554443333
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.91 E-value=1.5e-24 Score=246.37 Aligned_cols=183 Identities=31% Similarity=0.516 Sum_probs=152.0
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
+|+++...+ .||.+|+|+|.++++.++++ +|++++||||||||.+|+++++..+... .++||++|+
T Consensus 10 ~~~~~~~~l~~~g~~~l~~~Q~~ai~~l~~~-~~~il~apTGsGKT~~a~l~i~~~~~~~-----------~~vl~l~P~ 77 (202)
T d2p6ra3 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSG-KNLLLAMPTAAGKTLLAEMAMVREAIKG-----------GKSLYVVPL 77 (202)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHTTC-SCEEEECSSHHHHHHHHHHHHHHHHHTT-----------CCEEEEESS
T ss_pred hhHHHHHHHHHcCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCCchhHHHHHHHHHHhhcc-----------Ccceeeccc
Confidence 456666666 68999999999999998876 5699999999999999999999887643 379999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccccc-C
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHD-N 638 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d-~ 638 (2158)
++|+.|+.+.+++.+. ...++...+|+..........++|+++||..+..+.++.. ..+..+++||+||+|.+.+ .
T Consensus 78 ~~L~~q~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~--~~~~~~~~ii~DE~h~~~~~~ 154 (202)
T d2p6ra3 78 RALAGEKYESFKKWEK-IGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRA--SWIKAVSCLVVDEIHLLDSEK 154 (202)
T ss_dssp HHHHHHHHHHHTTTTT-TTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTC--SGGGGCCEEEETTGGGGGCTT
T ss_pred HHHHHHHHHHHHHHhh-ccccceeeccCcccccccccccceeeeccHHHHHHHhccc--hhhhhhhhccccHHHHhcccc
Confidence 9999999999987654 3567888888877666666789999999999988877664 4678899999999999987 6
Q ss_pred ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcc
Q 000114 639 RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVN 683 (2158)
Q Consensus 639 rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~ 683 (2158)
|+..++.++.++.+ .++++|+|+||||+||++++++|++..
T Consensus 155 r~~~~~~~l~~i~~----~~~~~~~l~lSATl~n~~~~~~~l~~~ 195 (202)
T d2p6ra3 155 RGATLEILVTKMRR----MNKALRVIGLSATAPNVTEIAEWLDAD 195 (202)
T ss_dssp THHHHHHHHHHHHH----HCTTCEEEEEECCCTTHHHHHHHTTCE
T ss_pred cchHHHHHHHHHHh----cCCCCcEEEEcCCCCcHHHHHHHcCCC
Confidence 88888888777643 466899999999999999999999765
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=6.5e-24 Score=240.85 Aligned_cols=184 Identities=22% Similarity=0.321 Sum_probs=147.0
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++.+.+++ .||++|||+|++++|.++++++ ++++||||||||++|++|+++.+.... .++++++++|+
T Consensus 10 L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~d-vl~~a~TGsGKTlayllP~l~~~~~~~--------~~~~~lil~pt 80 (206)
T d1veca_ 10 LKRELLMGIFEMGWEKPSPIQEESIPIALSGRD-ILARAKNGTGKSGAYLIPLLERLDLKK--------DNIQAMVIVPT 80 (206)
T ss_dssp CCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCC-EEEECCSSSTTHHHHHHHHHHHCCTTS--------CSCCEEEECSC
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCC-EEeeccCccccccccccchhhcccccc--------cCcceEEEeec
Confidence 567777766 7999999999999999998755 999999999999999999999875432 45789999999
Q ss_pred HHHHHHHHHHHHhhcccC-CcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccc
Q 000114 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
++||.|+++.+....+.. ++.+....|+....... ...++|+|+||+++..+.+... ..+++++++|+||||.|
T Consensus 81 ~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~~~--~~~~~l~~lVlDEaD~l 158 (206)
T d1veca_ 81 RELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGV--AKVDHVQMIVLDEADKL 158 (206)
T ss_dssp HHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC--SCCTTCCEEEEETHHHH
T ss_pred chhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccchh--ccccccceEEEeccccc
Confidence 999999999998876533 56777777777655433 3578999999999844444432 46788999999999998
Q ss_pred cc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhcccc
Q 000114 636 HD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNLE 685 (2158)
Q Consensus 636 ~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~~ 685 (2158)
.+ +++..++.|+..+ +.+.|++++|||+| .++.++.+....
T Consensus 159 l~~~f~~~i~~I~~~~-------~~~~Q~~l~SAT~~--~~v~~l~~~~l~ 200 (206)
T d1veca_ 159 LSQDFVQIMEDIILTL-------PKNRQILLYSATFP--LSVQKFMNSHLE 200 (206)
T ss_dssp TSTTTHHHHHHHHHHS-------CTTCEEEEEESCCC--HHHHHHHHHHCS
T ss_pred cccchHHHHHHHHHhC-------CCCCEEEEEEecCC--HHHHHHHHHHCC
Confidence 87 6888887776543 67889999999998 556666655443
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.90 E-value=6.5e-24 Score=241.55 Aligned_cols=184 Identities=22% Similarity=0.364 Sum_probs=148.1
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
.|+++..+++.. ||.+|+|+|.++++.+++++.|++++||||||||++|.+|+++.... ..+++++|++|+++||.
T Consensus 10 ~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~---~~~~~~lil~pt~~l~~ 86 (208)
T d1hv8a1 10 NLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE---NNGIEAIILTPTRELAI 86 (208)
T ss_dssp SCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS---SSSCCEEEECSCHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeeccccccccc---ccCcceEEEeeccccch
Confidence 356667777766 89999999999999999987789999999999999999999987665 34459999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcchh--hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCC
Q 000114 1405 ERYRDWEIKFGQGLGMRVVELTGETAMD--LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~ltG~~~~~--~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~ 1482 (2158)
|+++.+. .+....+.++..++|+.... .+.+..++|+|+||+++..++++ ....+++++++|+||||.+.+..
T Consensus 87 q~~~~~~-~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~IlV~TP~~l~~~l~~--~~~~~~~l~~lViDEad~l~~~~-- 161 (208)
T d1hv8a1 87 QVADEIE-SLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINR--GTLNLKNVKYFILDEADEMLNMG-- 161 (208)
T ss_dssp HHHHHHH-HHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHT--TCSCTTSCCEEEEETHHHHHTTT--
T ss_pred hhhhhhh-hhcccCCeEEEEeeCCCChHHHHHhcCCCCEEEEChHHHHHHHHc--CCCCcccCcEEEEEChHHhhcCC--
Confidence 9999998 56556688899999987654 34566789999999999888765 33468999999999999887643
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEeccCCCCh-HHHHHHh
Q 000114 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLANA-KDLGEWI 1521 (2158)
Q Consensus 1483 ~~e~~isrl~~i~~~~~~~~riV~lSATl~n~-~dl~~wl 1521 (2158)
....+..+.+.++++.|++++|||+++. .++++.+
T Consensus 162 ----~~~~i~~I~~~~~~~~Q~i~~SAT~~~~v~~~~~~~ 197 (208)
T d1hv8a1 162 ----FIKDVEKILNACNKDKRILLFSATMPREILNLAKKY 197 (208)
T ss_dssp ----THHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHH
T ss_pred ----ChHHHHHHHHhCCCCCeEEEEEccCCHHHHHHHHHH
Confidence 2233445556667889999999999863 4555433
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.5e-23 Score=237.76 Aligned_cols=185 Identities=21% Similarity=0.275 Sum_probs=147.0
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
.|+....+++.. ||..|||+|++|++.++++++ ++++||||||||++|++|++.++... ..++++++++|+++|+.
T Consensus 9 ~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~d-vl~~a~TGsGKTlayllP~l~~~~~~--~~~~~~lil~pt~el~~ 85 (206)
T d1veca_ 9 CLKRELLMGIFEMGWEKPSPIQEESIPIALSGRD-ILARAKNGTGKSGAYLIPLLERLDLK--KDNIQAMVIVPTRELAL 85 (206)
T ss_dssp CCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCC-EEEECCSSSTTHHHHHHHHHHHCCTT--SCSCCEEEECSCHHHHH
T ss_pred CcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCC-EEeeccCccccccccccchhhccccc--ccCcceEEEeecchhhH
Confidence 366778888887 899999999999999998655 99999999999999999999988763 33458999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcchhhh---cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCC
Q 000114 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDLK---LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~---~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g 1481 (2158)
|+++.+........+..+....|+...... .-..++|+|+||+++..+.+. ....+++++++|+||||.+.+.+
T Consensus 86 q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~--~~~~~~~l~~lVlDEaD~ll~~~- 162 (206)
T d1veca_ 86 QVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK--GVAKVDHVQMIVLDEADKLLSQD- 162 (206)
T ss_dssp HHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEETHHHHTSTT-
T ss_pred HHHHHHHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccc--hhccccccceEEEeccccccccc-
Confidence 999998854443456777777777665422 235679999999999988776 34568899999999999988754
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHh
Q 000114 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWI 1521 (2158)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl 1521 (2158)
+...+..+...++++.|++++|||+++ ..++++.+
T Consensus 163 -----f~~~i~~I~~~~~~~~Q~~l~SAT~~~~v~~l~~~~ 198 (206)
T d1veca_ 163 -----FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSH 198 (206)
T ss_dssp -----THHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHH
T ss_pred -----hHHHHHHHHHhCCCCCEEEEEEecCCHHHHHHHHHH
Confidence 334455556667889999999999976 34555544
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.8e-23 Score=237.30 Aligned_cols=185 Identities=22% Similarity=0.320 Sum_probs=147.4
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
.|+....++++. ||++|+|+|.++++.++++++ +++.||||||||++|++|+++.+... .+++++++++|+++|+.
T Consensus 7 ~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~d-vl~~A~TGsGKTla~~lp~l~~~~~~--~~~~~~lil~PtreL~~ 83 (207)
T d1t6na_ 7 LLKPELLRAIVDCGFEHPSEVQHECIPQAILGMD-VLCQAKSGMGKTAVFVLATLQQLEPV--TGQVSVLVMCHTRELAF 83 (207)
T ss_dssp CCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCC-EEEECCTTSCHHHHHHHHHHHHCCCC--TTCCCEEEECSCHHHHH
T ss_pred CcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCC-eEEEeccccccccccccceeeeeccc--CCCceEEEEeccchhhH
Confidence 366677788877 899999999999999998655 99999999999999999999987663 33458999999999999
Q ss_pred HHHHHHHHHhcCC-CCcEEEEEcCCcchhh--hcc--cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC
Q 000114 1405 ERYRDWEIKFGQG-LGMRVVELTGETAMDL--KLL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2158)
Q Consensus 1405 q~~~~~~~~f~~~-~g~~v~~ltG~~~~~~--~~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~ 1479 (2158)
|+++.++ .++.. ..+++..++|+..... ..+ ..++|+|+||+++..+++. ....++++.++|+||||.+.+.
T Consensus 84 qi~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~--~~~~l~~l~~lVlDEaD~ll~~ 160 (207)
T d1t6na_ 84 QISKEYE-RFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--KSLNLKHIKHFILDECDKMLEQ 160 (207)
T ss_dssp HHHHHHH-HHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT--TSSCCTTCCEEEEESHHHHHSS
T ss_pred HHHHHHH-HHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccC--Cceeccccceeehhhhhhhhhc
Confidence 9999998 45544 3467788888876542 222 3569999999999998876 3456899999999999988764
Q ss_pred CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHh
Q 000114 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWI 1521 (2158)
Q Consensus 1480 ~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl 1521 (2158)
.| +...+..+.+.++++.|++++|||+++ .+++++.+
T Consensus 161 ~~-----~~~~i~~I~~~~~~~~Q~il~SAT~~~~v~~l~~~~ 198 (207)
T d1t6na_ 161 LD-----MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKF 198 (207)
T ss_dssp HH-----HHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTT
T ss_pred CC-----cHHHHHHHHHhCCCCCEEEEEeeeCCHHHHHHHHHH
Confidence 22 334455666677889999999999976 46666654
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=2.1e-23 Score=238.22 Aligned_cols=184 Identities=21% Similarity=0.326 Sum_probs=143.2
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
.|++...+.+.. ||.+|+|+|.++|+.++.+++ ++++||||||||++|++|+++++... ..+++++|++||++||.
T Consensus 18 ~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~d-vl~~a~TGsGKTlayllp~l~~i~~~--~~~~~alil~Pt~eL~~ 94 (218)
T d2g9na1 18 NLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYD-VIAQAQSGTGKTATFAISILQQIELD--LKATQALVLAPTRELAQ 94 (218)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCC-EEEECCTTSSHHHHHHHHHHHHCCTT--CCSCCEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCC-EEEEcccchhhhhhhhhhhhheeccc--ccCccEEEEcccchhhh
Confidence 356667777766 899999999999999998655 99999999999999999999998763 33459999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcchhh----hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCC
Q 000114 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDL----KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQG 1480 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~ltG~~~~~~----~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~ 1480 (2158)
|+++.+. .+....+.++..+.|+..... .....++|+|+||+++..++++ ....+++++++|+||||.+.+.+
T Consensus 95 Q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~--~~~~~~~l~~lVlDEaD~ll~~~ 171 (218)
T d2g9na1 95 QIQKVVM-ALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR--RYLSPKYIKMFVLDEADEMLSRG 171 (218)
T ss_dssp HHHHHHH-HHHTTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHT--TSSCSTTCCEEEEESHHHHHHTT
T ss_pred hHHHHHh-hhccccceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhc--CCcccccceEEEeeecchhhcCc
Confidence 9999998 566566777777776544331 1234569999999999998876 34578999999999999998654
Q ss_pred CChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHh
Q 000114 1481 GPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWI 1521 (2158)
Q Consensus 1481 g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl 1521 (2158)
+...+..+...++.+.|++++|||+++ ..++++.+
T Consensus 172 ------f~~~~~~Il~~~~~~~Q~il~SAT~~~~v~~~~~~~ 207 (218)
T d2g9na1 172 ------FKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKF 207 (218)
T ss_dssp ------CHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHH
T ss_pred ------hHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHH
Confidence 223444445556788999999999976 34555443
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.5e-23 Score=238.15 Aligned_cols=180 Identities=22% Similarity=0.285 Sum_probs=140.4
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++.+.+++ .||++|+|+|++++|.++++++ ++++||||||||++|++|+++.+.... .++++++++|+
T Consensus 8 L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~d-vl~~A~TGsGKTla~~lp~l~~~~~~~--------~~~~~lil~Pt 78 (207)
T d1t6na_ 8 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMD-VLCQAKSGMGKTAVFVLATLQQLEPVT--------GQVSVLVMCHT 78 (207)
T ss_dssp CCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCC-EEEECCTTSCHHHHHHHHHHHHCCCCT--------TCCCEEEECSC
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCC-eEEEeccccccccccccceeeeecccC--------CCceEEEEecc
Confidence 566666665 7999999999999999998855 999999999999999999999865432 45689999999
Q ss_pred HHHHHHHHHHHHhhcccC-CcEEEEEeCCCccCHhh----hccccEEEcchhHHHHHHhccCCCccccccceEEeecccc
Q 000114 560 KALVAEVVGNLSNRLQMY-DVKVRELSGDQTLTRQQ----IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHL 634 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~-gi~v~~l~Gd~~~~~~~----~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~ 634 (2158)
++||.|+.+.+....... .+++..++|+.....+. ...++|+|+||+++..+.+... ..+++++++|+||||.
T Consensus 79 reL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~~~--~~l~~l~~lVlDEaD~ 156 (207)
T d1t6na_ 79 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS--LNLKHIKHFILDECDK 156 (207)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS--SCCTTCCEEEEESHHH
T ss_pred chhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccCCc--eeccccceeehhhhhh
Confidence 999999999999877655 35778888887665433 2468999999999855555432 4688999999999999
Q ss_pred cccC--ChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHh
Q 000114 635 LHDN--RGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLR 681 (2158)
Q Consensus 635 l~d~--rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~ 681 (2158)
|.+. +...++.|+ +..+...|++++|||+|+ ++.++.+
T Consensus 157 ll~~~~~~~~i~~I~-------~~~~~~~Q~il~SAT~~~--~v~~l~~ 196 (207)
T d1t6na_ 157 MLEQLDMRRDVQEIF-------RMTPHEKQVMMFSATLSK--EIRPVCR 196 (207)
T ss_dssp HHSSHHHHHHHHHHH-------HTSCSSSEEEEEESCCCT--TTHHHHH
T ss_pred hhhcCCcHHHHHHHH-------HhCCCCCEEEEEeeeCCH--HHHHHHH
Confidence 8874 333333332 335678999999999984 3444443
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=1.8e-23 Score=238.00 Aligned_cols=182 Identities=22% Similarity=0.279 Sum_probs=144.6
Q ss_pred CCChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 481 EMPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 481 ~lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
.|++.+.+++ .||++||++|+++++.++.|.+ ++++||||||||++|++|+++.+.... .++++++++|
T Consensus 16 ~l~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~d-vl~~a~TGsGKT~a~~lp~i~~l~~~~--------~~~~~lil~p 86 (212)
T d1qdea_ 16 ELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHD-VLAQAQSGTGKTGTFSIAALQRIDTSV--------KAPQALMLAP 86 (212)
T ss_dssp TCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCC-EEEECCTTSSHHHHHHHHHHHHCCTTC--------CSCCEEEECS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCC-EEeecccccchhhhhHhhhHhhhhccC--------CCcceEEEcc
Confidence 3678888877 7999999999999999998865 999999999999999999999885432 4678999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHh--hhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccc
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
+++|+.|+...+.......++.+..+.|+.....+ ...+++|+|+||+++..+.+... ..+.+++++|+||||.+.
T Consensus 87 t~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvI~TP~~l~~~~~~~~--~~l~~l~~lVlDEad~ll 164 (212)
T d1qdea_ 87 TRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRR--FRTDKIKMFILDEADEML 164 (212)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTS--SCCTTCCEEEEETHHHHH
T ss_pred cHHHhhhhhhhhcccccccccceeeEeeccchhHHHHHhcCCcEEEECCCccccccccCc--eecCcceEEeehhhhhhc
Confidence 99999999999998887778888888887655443 34578999999999855555543 468899999999999998
Q ss_pred c-CChhhHHHHHHHHHHHHhhccccccEEEEccccCC-hHHHHHHH
Q 000114 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPN-YEDVALFL 680 (2158)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn-~~dv~~~l 680 (2158)
+ +++..++.|+.++ ++..|++++|||+|+ ..++++.+
T Consensus 165 d~~f~~~v~~I~~~~-------~~~~Q~vl~SAT~~~~v~~l~~~~ 203 (212)
T d1qdea_ 165 SSGFKEQIYQIFTLL-------PPTTQVVLLSATMPNDVLEVTTKF 203 (212)
T ss_dssp HTTCHHHHHHHHHHS-------CTTCEEEEEESSCCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHhC-------CCCCeEEEEEeeCCHHHHHHHHHH
Confidence 8 5888877776543 567899999999984 24444433
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.90 E-value=1.2e-23 Score=238.90 Aligned_cols=181 Identities=31% Similarity=0.593 Sum_probs=148.6
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHH
Q 000114 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2158)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~ 1408 (2158)
.....+.. ||.+|+|+|.++++.++++ +|++++||||||||.+|.+++++.+.. .+ ++||++|+++|+.|+++
T Consensus 13 ~~~~~l~~~g~~~l~~~Q~~ai~~l~~~-~~~il~apTGsGKT~~a~l~i~~~~~~---~~--~vl~l~P~~~L~~q~~~ 86 (202)
T d2p6ra3 13 YAVGILKEEGIEELFPPQAEAVEKVFSG-KNLLLAMPTAAGKTLLAEMAMVREAIK---GG--KSLYVVPLRALAGEKYE 86 (202)
T ss_dssp HHHHHHHCC---CCCCCCHHHHHHHTTC-SCEEEECSSHHHHHHHHHHHHHHHHHT---TC--CEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCCchhHHHHHHHHHHhhc---cC--cceeecccHHHHHHHHH
Confidence 33444444 7889999999999999875 569999999999999999999988765 44 89999999999999999
Q ss_pred HHHHHhcCCCCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC-CCChHHHH
Q 000114 1409 DWEIKFGQGLGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ-GGPVLEVI 1487 (2158)
Q Consensus 1409 ~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~-~g~~~e~~ 1487 (2158)
++++ +... ..++...+|+..........++|+++||..+..+++.+ ...+.++++||+||+|.+.++ ++..++.+
T Consensus 87 ~~~~-~~~~-~~~v~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~--~~~~~~~~~ii~DE~h~~~~~~r~~~~~~~ 162 (202)
T d2p6ra3 87 SFKK-WEKI-GLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNR--ASWIKAVSCLVVDEIHLLDSEKRGATLEIL 162 (202)
T ss_dssp HHTT-TTTT-TCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTT--CSGGGGCCEEEETTGGGGGCTTTHHHHHHH
T ss_pred HHHH-Hhhc-cccceeeccCcccccccccccceeeeccHHHHHHHhcc--chhhhhhhhccccHHHHhcccccchHHHHH
Confidence 9984 4332 46777888887776666777899999999999888764 346789999999999999874 57778888
Q ss_pred HHHHHHHHhhcCCCceEEEeccCCCChHHHHHHhccC
Q 000114 1488 VSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGAT 1524 (2158)
Q Consensus 1488 isrl~~i~~~~~~~~riV~lSATl~n~~dl~~wl~~~ 1524 (2158)
+.+++.. +++.|+|+||||++|++++++||++.
T Consensus 163 l~~i~~~----~~~~~~l~lSATl~n~~~~~~~l~~~ 195 (202)
T d2p6ra3 163 VTKMRRM----NKALRVIGLSATAPNVTEIAEWLDAD 195 (202)
T ss_dssp HHHHHHH----CTTCEEEEEECCCTTHHHHHHHTTCE
T ss_pred HHHHHhc----CCCCcEEEEcCCCCcHHHHHHHcCCC
Confidence 8888765 56899999999999999999999765
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=5.3e-23 Score=234.01 Aligned_cols=187 Identities=22% Similarity=0.313 Sum_probs=146.2
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
.|+....+++.. ||.+|||+|.++|+.++.+.+ ++++||||||||++|++|+++++... ..++++++++|+++|+.
T Consensus 16 ~l~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~d-vl~~a~TGsGKT~a~~lp~i~~l~~~--~~~~~~lil~pt~el~~ 92 (212)
T d1qdea_ 16 ELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHD-VLAQAQSGTGKTGTFSIAALQRIDTS--VKAPQALMLAPTRELAL 92 (212)
T ss_dssp TCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCC-EEEECCTTSSHHHHHHHHHHHHCCTT--CCSCCEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCC-EEeecccccchhhhhHhhhHhhhhcc--CCCcceEEEcccHHHhh
Confidence 466777788876 899999999999999998665 99999999999999999999998763 33469999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcch--hhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCC
Q 000114 1405 ERYRDWEIKFGQGLGMRVVELTGETAM--DLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~ltG~~~~--~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~ 1482 (2158)
|.+..+. .+....+..+..+.|+... +...+++++|+|+||+++..+.+.. ...+++++++|+||||.+.+.+
T Consensus 93 q~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvI~TP~~l~~~~~~~--~~~l~~l~~lVlDEad~lld~~-- 167 (212)
T d1qdea_ 93 QIQKVVM-ALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRR--RFRTDKIKMFILDEADEMLSSG-- 167 (212)
T ss_dssp HHHHHHH-HHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTT--SSCCTTCCEEEEETHHHHHHTT--
T ss_pred hhhhhhc-ccccccccceeeEeeccchhHHHHHhcCCcEEEECCCccccccccC--ceecCcceEEeehhhhhhcccc--
Confidence 9999987 5665556777777776543 3445667899999999999887763 4568999999999999998653
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHhccC
Q 000114 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWIGAT 1524 (2158)
Q Consensus 1483 ~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl~~~ 1524 (2158)
+...+..+.+.+++..|++++|||+++ ..++++++...
T Consensus 168 ----f~~~v~~I~~~~~~~~Q~vl~SAT~~~~v~~l~~~~l~~ 206 (212)
T d1qdea_ 168 ----FKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRN 206 (212)
T ss_dssp ----CHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSS
T ss_pred ----hHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHHCCC
Confidence 233344444556778999999999986 46777766443
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=1.3e-21 Score=222.23 Aligned_cols=184 Identities=23% Similarity=0.323 Sum_probs=151.2
Q ss_pred ccChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHH
Q 000114 1326 ALRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAK 1404 (2158)
Q Consensus 1326 ~L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~ 1404 (2158)
.|++...+.+.. ||.+|||+|.++++.++++.+ +++.||||||||++|++|++.++...... .++++++|+++++.
T Consensus 7 ~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~d-vi~~a~tGsGKTlay~lp~i~~~~~~~~~--~~~~~~~~~~~~~~ 83 (206)
T d1s2ma1 7 YLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRD-ILARAKNGTGKTAAFVIPTLEKVKPKLNK--IQALIMVPTRELAL 83 (206)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCC-EEEECCTTSCHHHHHHHHHHHHCCTTSCS--CCEEEECSSHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCC-EEEecCCcchhhhhhcccccccccccccc--ccceeeccchhhhh
Confidence 466677788877 899999999999999999665 99999999999999999999988764333 48999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCC
Q 000114 1405 ERYRDWEIKFGQGLGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGG 1481 (2158)
Q Consensus 1405 q~~~~~~~~f~~~~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g 1481 (2158)
+....+. .++...++++...+|+..... .....++|+|+||+++..+++. ....+.+++++|+||||.+.+.+
T Consensus 84 ~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~--~~~~l~~l~~lV~DEaD~l~~~~- 159 (206)
T d1s2ma1 84 QTSQVVR-TLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR--KVADLSDCSLFIMDEADKMLSRD- 159 (206)
T ss_dssp HHHHHHH-HHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--TCSCCTTCCEEEEESHHHHSSHH-
T ss_pred hhhhhhh-hcccccCeeEEeecCccchhhHHHHhcccceEEEECCccccccccc--ceeecccceEEEeechhhhhhhh-
Confidence 9998887 667777999999999876542 2335679999999999998876 45578999999999999998653
Q ss_pred ChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHh
Q 000114 1482 PVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWI 1521 (2158)
Q Consensus 1482 ~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl 1521 (2158)
+...+..+...+++..|++++|||+++ ..+++.++
T Consensus 160 -----f~~~v~~I~~~l~~~~Q~il~SATl~~~v~~~~~~~ 195 (206)
T d1s2ma1 160 -----FKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKH 195 (206)
T ss_dssp -----HHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHH
T ss_pred -----hHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHHHHH
Confidence 445566666777888999999999974 45555544
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=6.2e-22 Score=224.91 Aligned_cols=183 Identities=19% Similarity=0.237 Sum_probs=149.2
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++.+.+++ .||.+|||+|++++|.++.+.+ +++.||||||||++|++|+++.+.... .+.++++++|+
T Consensus 8 L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~d-vi~~a~tGsGKTlay~lp~i~~~~~~~--------~~~~~~~~~~~ 78 (206)
T d1s2ma1 8 LKRELLMGIFEAGFEKPSPIQEEAIPVAITGRD-ILARAKNGTGKTAAFVIPTLEKVKPKL--------NKIQALIMVPT 78 (206)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCC-EEEECCTTSCHHHHHHHHHHHHCCTTS--------CSCCEEEECSS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCC-EEEecCCcchhhhhhcccccccccccc--------ccccceeeccc
Confidence 566666666 7999999999999999999865 999999999999999999999875432 35679999999
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHhh---hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccc
Q 000114 560 KALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQQ---IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLH 636 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~~---~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~ 636 (2158)
++++.+....+.......++++...+|+....... ...++|+|+||+++..+.+... ..+.+++++|+||||.|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~--~~l~~l~~lV~DEaD~l~ 156 (206)
T d1s2ma1 79 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKV--ADLSDCSLFIMDEADKML 156 (206)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC--SCCTTCCEEEEESHHHHS
T ss_pred hhhhhhhhhhhhhcccccCeeEEeecCccchhhHHHHhcccceEEEECCcccccccccce--eecccceEEEeechhhhh
Confidence 99999999999998888899999999988765443 3679999999999854444432 468899999999999998
Q ss_pred c-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhccc
Q 000114 637 D-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVNL 684 (2158)
Q Consensus 637 d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~~~ 684 (2158)
+ ++++.++.|+.+ .+...|++++|||+| ..+..+.+...
T Consensus 157 ~~~f~~~v~~I~~~-------l~~~~Q~il~SATl~--~~v~~~~~~~l 196 (206)
T d1s2ma1 157 SRDFKTIIEQILSF-------LPPTHQSLLFSATFP--LTVKEFMVKHL 196 (206)
T ss_dssp SHHHHHHHHHHHTT-------SCSSCEEEEEESCCC--HHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHh-------CCCCCEEEEEEEeCC--HHHHHHHHHHC
Confidence 7 577777776654 356789999999998 45555555433
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=99.86 E-value=8.9e-22 Score=227.98 Aligned_cols=172 Identities=17% Similarity=0.283 Sum_probs=134.7
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc-------CCCceEEEEEcccHHHHHHHHHHH
Q 000114 1338 GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-------ETGVMRAVYIAPLEALAKERYRDW 1410 (2158)
Q Consensus 1338 gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~-------~~~~~~~v~IaP~raLa~q~~~~~ 1410 (2158)
||..|+|+|.+|++.++++ +|++++||||||||++|++|++.++.... ...++++++++|+++||.|+++.+
T Consensus 40 g~~~pt~iQ~~~ip~il~g-~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~~~~alil~pt~el~~q~~~~~ 118 (238)
T d1wrba1 40 SYQRPTPIQKNAIPAILEH-RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 118 (238)
T ss_dssp TCCSCCHHHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHhhhhhCC-CCEEEECCCCCCcceeeHHHHHHHHHhcccccccccCCCCceEEEeccchhhhcchheee
Confidence 7999999999999999985 45999999999999999999999986531 123468999999999999999988
Q ss_pred HHHhcCCCCcEEEEEcCCcchh---hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHH
Q 000114 1411 EIKFGQGLGMRVVELTGETAMD---LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVI 1487 (2158)
Q Consensus 1411 ~~~f~~~~g~~v~~ltG~~~~~---~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~ 1487 (2158)
. .++...++++..++|+.... ......++|+|+||+++..+++.. ...+.++.++|+||||.+.+.+ +
T Consensus 119 ~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~~--~~~l~~v~~lViDEaD~ll~~~------f 189 (238)
T d1wrba1 119 Q-KFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN--KISLEFCKYIVLDEADRMLDMG------F 189 (238)
T ss_dssp H-HHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT--SBCCTTCCEEEEETHHHHHHTT------C
T ss_pred e-ecccCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHccC--ceeccccceeeeehhhhhhhhc------c
Confidence 8 57766789999999887654 234456699999999999888763 4468999999999999887643 1
Q ss_pred HHHHHHHHhhc----CCCceEEEeccCCCC-hHHHHH
Q 000114 1488 VSRMRYIASQV----ENKIRIVALSTSLAN-AKDLGE 1519 (2158)
Q Consensus 1488 isrl~~i~~~~----~~~~riV~lSATl~n-~~dl~~ 1519 (2158)
...+..+.+++ +.+.|++++|||+++ .+.+++
T Consensus 190 ~~~i~~Il~~~~~~~~~~~Q~il~SAT~~~~v~~l~~ 226 (238)
T d1wrba1 190 EPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAA 226 (238)
T ss_dssp HHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCCEEEEEeeeCCHHHHHHHH
Confidence 22233333322 236799999999976 344544
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.85 E-value=2.3e-21 Score=221.18 Aligned_cols=181 Identities=21% Similarity=0.342 Sum_probs=141.4
Q ss_pred CChhhHhhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEccc
Q 000114 482 MPEWAQPAF--KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPM 559 (2158)
Q Consensus 482 lp~~~~~~f--~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~ 559 (2158)
|++++.+.+ .||++|+|+|++|++.+++|++ ++++||||||||++|++|+++.+.... .....++++|+
T Consensus 8 L~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~d-vii~a~TGSGKTlayllp~l~~~~~~~--------~~~~~~~~~~~ 78 (209)
T d1q0ua_ 8 FQPFIIEAIKTLRFYKPTEIQERIIPGALRGES-MVGQSQTGTGKTHAYLLPIMEKIKPER--------AEVQAVITAPT 78 (209)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCC-EEEECCSSHHHHHHHHHHHHHHCCTTS--------CSCCEEEECSS
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC-eEeecccccccceeeeeeecccccccc--------ccccccccccc
Confidence 567777776 6999999999999999998865 999999999999999999999875432 34578999999
Q ss_pred HHHHHHHHHHHHhhcccC----CcEEEEEeCCCccCHh---hhccccEEEcchhHHHHHHhccCCCccccccceEEeecc
Q 000114 560 KALVAEVVGNLSNRLQMY----DVKVRELSGDQTLTRQ---QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEI 632 (2158)
Q Consensus 560 kaLa~q~~~~~~~~~~~~----gi~v~~l~Gd~~~~~~---~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEa 632 (2158)
+.++.+.+..+....... ...+..+.|+.+...+ ...+++|+|+||+++..+.++.. ..+.+++++|+|||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~~--~~~~~l~~lViDEa 156 (209)
T d1q0ua_ 79 RELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQA--LDVHTAHILVVDEA 156 (209)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTC--CCGGGCCEEEECSH
T ss_pred cchhHHHHHHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhhhc--cccccceEEEEeec
Confidence 999999988877655432 3456666666544332 23578999999999866665543 46789999999999
Q ss_pred ccccc-CChhhHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHhc
Q 000114 633 HLLHD-NRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRV 682 (2158)
Q Consensus 633 H~l~d-~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~~ 682 (2158)
|.+.+ +++..++.|+.+ .+++.|++++|||+|+ ++.++.+.
T Consensus 157 d~ll~~~f~~~v~~I~~~-------~~~~~Q~il~SATl~~--~v~~l~~~ 198 (209)
T d1q0ua_ 157 DLMLDMGFITDVDQIAAR-------MPKDLQMLVFSATIPE--KLKPFLKK 198 (209)
T ss_dssp HHHHHTTCHHHHHHHHHT-------SCTTCEEEEEESCCCG--GGHHHHHH
T ss_pred ccccccccHHHHHHHHHH-------CCCCCEEEEEEccCCH--HHHHHHHH
Confidence 99988 588887777654 3678999999999973 45555543
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.84 E-value=1.9e-20 Score=213.37 Aligned_cols=184 Identities=20% Similarity=0.263 Sum_probs=140.5
Q ss_pred cChhHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1327 LRNPLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1327 L~~~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
|++...+++.. ||.+|+|+|.+||+.+++|++ ++++||||||||++|++|+++.+...... +..++++|++.++.+
T Consensus 8 L~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~d-vii~a~TGSGKTlayllp~l~~~~~~~~~--~~~~~~~~~~~~~~~ 84 (209)
T d1q0ua_ 8 FQPFIIEAIKTLRFYKPTEIQERIIPGALRGES-MVGQSQTGTGKTHAYLLPIMEKIKPERAE--VQAVITAPTRELATQ 84 (209)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCC-EEEECCSSHHHHHHHHHHHHHHCCTTSCS--CCEEEECSSHHHHHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC-eEeecccccccceeeeeeecccccccccc--ccccccccccchhHH
Confidence 55666677765 799999999999999999665 99999999999999999999988774333 388999999999999
Q ss_pred HHHHHHHHhcCC---CCcEEEEEcCCcchhh---hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC
Q 000114 1406 RYRDWEIKFGQG---LGMRVVELTGETAMDL---KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2158)
Q Consensus 1406 ~~~~~~~~f~~~---~g~~v~~ltG~~~~~~---~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~ 1479 (2158)
.+.......... ....+..+.|+..... .....++|+|+||+++..+.+++ ...+.+++++|+||||.+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~--~~~~~~l~~lViDEad~ll~~ 162 (209)
T d1q0ua_ 85 IYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQ--ALDVHTAHILVVDEADLMLDM 162 (209)
T ss_dssp HHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTT--CCCGGGCCEEEECSHHHHHHT
T ss_pred HHHHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhhh--ccccccceEEEEeeccccccc
Confidence 998877443322 2345556666554432 23345699999999999988764 446799999999999999875
Q ss_pred CCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC-hHHHHHHh
Q 000114 1480 GGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN-AKDLGEWI 1521 (2158)
Q Consensus 1480 ~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n-~~dl~~wl 1521 (2158)
. +...+..+...++++.|++++|||+++ ..++++.+
T Consensus 163 ~------f~~~v~~I~~~~~~~~Q~il~SATl~~~v~~l~~~~ 199 (209)
T d1q0ua_ 163 G------FITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKY 199 (209)
T ss_dssp T------CHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHH
T ss_pred c------cHHHHHHHHHHCCCCCEEEEEEccCCHHHHHHHHHH
Confidence 4 223344455566789999999999975 45566544
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=2.5e-19 Score=203.69 Aligned_cols=177 Identities=19% Similarity=0.310 Sum_probs=126.1
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHH
Q 000114 1330 PLYEALYQGFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRD 1409 (2158)
Q Consensus 1330 ~~~~~l~~gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~ 1409 (2158)
..+++.| ||..|+|+|.+|+++++++ +|+++++|||||||+||.+|++. ..+ +++|++|+++|+.|+.+.
T Consensus 15 ~~l~~~f-g~~~~rp~Q~~ai~~~l~g-~~vlv~apTGsGKT~~~~~~~~~------~~~--~~~~v~P~~~L~~q~~~~ 84 (206)
T d1oywa2 15 QVLQETF-GYQQFRPGQEEIIDTVLSG-RDCLVVMPTGGGKSLCYQIPALL------LNG--LTVVVSPLISLMKDQVDQ 84 (206)
T ss_dssp HHHHHTT-CCSSCCTTHHHHHHHHHTT-CCEEEECSCHHHHHHHHHHHHHH------SSS--EEEEECSCHHHHHHHHHH
T ss_pred HHHHHhc-CCCCCCHHHHHHHHHHHcC-CCEEEEcCCCCCCcchhhhhhhh------ccC--ceEEeccchhhhhhHHHH
Confidence 4556666 5999999999999999985 56999999999999999999873 234 899999999999999999
Q ss_pred HHHHhcCCCCcEEEEEcCCcchh-------hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCC
Q 000114 1410 WEIKFGQGLGMRVVELTGETAMD-------LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGP 1482 (2158)
Q Consensus 1410 ~~~~f~~~~g~~v~~ltG~~~~~-------~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~ 1482 (2158)
++.. +. ......+..... .......+|+++||+.+....... .....+++++|+||+|++.+++..
T Consensus 85 l~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~--~~~~~~v~~lviDEaH~~~~~~~~ 157 (206)
T d1oywa2 85 LQAN-GV----AAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLE--HLAHWNPVLLAVDEAHCISQWGHD 157 (206)
T ss_dssp HHHT-TC----CEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHH--HHTTSCEEEEEESSGGGGCTTSSC
T ss_pred HHhh-cc----cccccccccccccchhHHHHHhcCCceEEEEechhhhchhhcc--cchhheeeeeeeeeeeeeeccccc
Confidence 9843 22 233333322211 113345689999999875543332 234678999999999999875422
Q ss_pred hHHHHHHHHHHHHhhcCCCceEEEeccCCCCh--HHHHHHhccCC
Q 000114 1483 VLEVIVSRMRYIASQVENKIRIVALSTSLANA--KDLGEWIGATS 1525 (2158)
Q Consensus 1483 ~~e~~isrl~~i~~~~~~~~riV~lSATl~n~--~dl~~wl~~~~ 1525 (2158)
.... ...+..+.... +++|+++||||+++. +|+.+||+...
T Consensus 158 ~~~~-~~~~~~l~~~~-~~~~ii~lSATl~~~v~~di~~~L~l~~ 200 (206)
T d1oywa2 158 FRPE-YAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLND 200 (206)
T ss_dssp CCHH-HHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCS
T ss_pred hHHH-HHHHHHHHHhC-CCCceEEEEeCCCHHHHHHHHHHcCCCC
Confidence 2111 12222222333 478999999999874 58999998764
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.78 E-value=1.2e-18 Score=196.91 Aligned_cols=168 Identities=23% Similarity=0.300 Sum_probs=126.4
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhh
Q 000114 494 TQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNR 573 (2158)
Q Consensus 494 ~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~ 573 (2158)
-+|+++|.+++..+.. .|+|++||||||||+++++++...+.+. +.++||++|+++|+.|++++|.++
T Consensus 8 ~~pr~~Q~~~~~~~~~--~n~lv~~pTGsGKT~i~~~~~~~~~~~~----------~~~il~i~P~~~L~~q~~~~~~~~ 75 (200)
T d1wp9a1 8 IQPRIYQEVIYAKCKE--TNCLIVLPTGLGKTLIAMMIAEYRLTKY----------GGKVLMLAPTKPLVLQHAESFRRL 75 (200)
T ss_dssp HCCCHHHHHHHHHGGG--SCEEEECCTTSCHHHHHHHHHHHHHHHS----------CSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHHHhc----------CCcEEEEcCchHHHHHHHHHHHHh
Confidence 3789999999998764 4799999999999999999888776553 237999999999999999999999
Q ss_pred cccCCcEEEEEeCCCccCHh--hhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHH
Q 000114 574 LQMYDVKVRELSGDQTLTRQ--QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTV 651 (2158)
Q Consensus 574 ~~~~gi~v~~l~Gd~~~~~~--~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~ 651 (2158)
+...+.++...+++...... .....+|+++||+.+....... ...++++++||+||||++....+.. .+....
T Consensus 76 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~--~~~~~~~~~vIiDE~H~~~~~~~~~--~~~~~~- 150 (200)
T d1wp9a1 76 FNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAG--RISLEDVSLIVFDEAHRAVGNYAYV--FIAREY- 150 (200)
T ss_dssp BCSCGGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTT--SCCTTSCSEEEEETGGGCSTTCHHH--HHHHHH-
T ss_pred hcccccceeeeecccchhHHHHhhhcccccccccchhHHHHhhh--hhhccccceEEEEehhhhhcchhHH--HHHHHH-
Confidence 98888889888887665443 2456789999999984443332 2567789999999999987644211 122221
Q ss_pred HHHhhccccccEEEEccccCC-hHHHHHHHh
Q 000114 652 RQIETTKEHIRLVGLSATLPN-YEDVALFLR 681 (2158)
Q Consensus 652 ~~~~~~~~~~riv~lSATlpn-~~dv~~~l~ 681 (2158)
.......+++++|||+++ .+++..++.
T Consensus 151 ---~~~~~~~~~l~~SATp~~~~~~~~~~~~ 178 (200)
T d1wp9a1 151 ---KRQAKNPLVIGLTASPGSTPEKIMEVIN 178 (200)
T ss_dssp ---HHHCSSCCEEEEESCSCSSHHHHHHHHH
T ss_pred ---HhcCCCCcEEEEEecCCCcHHHHHHHHh
Confidence 123457899999999764 445555544
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.78 E-value=1.4e-18 Score=196.29 Aligned_cols=180 Identities=21% Similarity=0.276 Sum_probs=131.7
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1339 FKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1339 f~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
+-+|+++|.+++..+.. .|+|++||||||||+++.+++...+.+ .++ ++||++|+++|+.|+++++++.+. ..
T Consensus 7 ~~~pr~~Q~~~~~~~~~--~n~lv~~pTGsGKT~i~~~~~~~~~~~--~~~--~il~i~P~~~L~~q~~~~~~~~~~-~~ 79 (200)
T d1wp9a1 7 LIQPRIYQEVIYAKCKE--TNCLIVLPTGLGKTLIAMMIAEYRLTK--YGG--KVLMLAPTKPLVLQHAESFRRLFN-LP 79 (200)
T ss_dssp HHCCCHHHHHHHHHGGG--SCEEEECCTTSCHHHHHHHHHHHHHHH--SCS--CEEEECSSHHHHHHHHHHHHHHBC-SC
T ss_pred CCCCCHHHHHHHHHHhc--CCeEEEeCCCCcHHHHHHHHHHHHHHh--cCC--cEEEEcCchHHHHHHHHHHHHhhc-cc
Confidence 34799999999998864 569999999999999999888777665 244 899999999999999999996554 34
Q ss_pred CcEEEEEcCCcchhh--hcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHh
Q 000114 1419 GMRVVELTGETAMDL--KLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIAS 1496 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~~--~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~ 1496 (2158)
+.++...+++..... +.+...+|+++||+.+...... ....+++++++|+||||++.... ........+..
T Consensus 80 ~~~v~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~--~~~~~~~~~~vIiDE~H~~~~~~--~~~~~~~~~~~--- 152 (200)
T d1wp9a1 80 PEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLA--GRISLEDVSLIVFDEAHRAVGNY--AYVFIAREYKR--- 152 (200)
T ss_dssp GGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHT--TSCCTTSCSEEEEETGGGCSTTC--HHHHHHHHHHH---
T ss_pred ccceeeeecccchhHHHHhhhcccccccccchhHHHHhh--hhhhccccceEEEEehhhhhcch--hHHHHHHHHHh---
Confidence 677888888766542 3445679999999999877665 34567889999999999987543 12222222211
Q ss_pred hcCCCceEEEeccCCCC-hHHHHHHhccCCCceEecCC
Q 000114 1497 QVENKIRIVALSTSLAN-AKDLGEWIGATSHGLFNFPP 1533 (2158)
Q Consensus 1497 ~~~~~~riV~lSATl~n-~~dl~~wl~~~~~~i~~f~~ 1533 (2158)
.....+++++|||+.+ .+++.++++......+.+..
T Consensus 153 -~~~~~~~l~~SATp~~~~~~~~~~~~~l~~~~i~~~~ 189 (200)
T d1wp9a1 153 -QAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRS 189 (200)
T ss_dssp -HCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECC
T ss_pred -cCCCCcEEEEEecCCCcHHHHHHHHhcCCceEEEeCC
Confidence 2457899999999865 45566665544333444333
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=1.4e-19 Score=205.70 Aligned_cols=177 Identities=21% Similarity=0.243 Sum_probs=123.6
Q ss_pred CChhhHhhc---CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc
Q 000114 482 MPEWAQPAF---KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP 558 (2158)
Q Consensus 482 lp~~~~~~f---~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP 558 (2158)
|++-+++.+ .||++|+|+|.+|+++++.+ +|++++||||||||++|.+|++.. ..+++|++|
T Consensus 9 l~~~~~~~l~~~fg~~~~rp~Q~~ai~~~l~g-~~vlv~apTGsGKT~~~~~~~~~~--------------~~~~~~v~P 73 (206)
T d1oywa2 9 LESGAKQVLQETFGYQQFRPGQEEIIDTVLSG-RDCLVVMPTGGGKSLCYQIPALLL--------------NGLTVVVSP 73 (206)
T ss_dssp HHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTT-CCEEEECSCHHHHHHHHHHHHHHS--------------SSEEEEECS
T ss_pred CCHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCCCCcchhhhhhhhc--------------cCceEEecc
Confidence 344444443 48999999999999999887 469999999999999999998753 237999999
Q ss_pred cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccCHh-------hhccccEEEcchhHHHHHHhccCCCccccccceEEeec
Q 000114 559 MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLTRQ-------QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDE 631 (2158)
Q Consensus 559 ~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~~~-------~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDE 631 (2158)
+++|+.|+.+.+...+. ......+....... .....+|+++||+.+....... ......++++|+||
T Consensus 74 ~~~L~~q~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~--~~~~~~v~~lviDE 147 (206)
T d1oywa2 74 LISLMKDQVDQLQANGV----AAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLE--HLAHWNPVLLAVDE 147 (206)
T ss_dssp CHHHHHHHHHHHHHTTC----CEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHH--HHTTSCEEEEEESS
T ss_pred chhhhhhHHHHHHhhcc----cccccccccccccchhHHHHHhcCCceEEEEechhhhchhhcc--cchhheeeeeeeee
Confidence 99999999999987643 23333332221111 1346889999999873222221 13456789999999
Q ss_pred ccccccC-ChhhHHH-HHHHHHHHHhhccccccEEEEccccCCh--HHHHHHHhcc
Q 000114 632 IHLLHDN-RGPVLES-IVARTVRQIETTKEHIRLVGLSATLPNY--EDVALFLRVN 683 (2158)
Q Consensus 632 aH~l~d~-rg~~le~-iv~r~~~~~~~~~~~~riv~lSATlpn~--~dv~~~l~~~ 683 (2158)
+|++++. ++...+. .+.+++ ...+++|+++||||+++. +|+.++|+..
T Consensus 148 aH~~~~~~~~~~~~~~~~~~l~----~~~~~~~ii~lSATl~~~v~~di~~~L~l~ 199 (206)
T d1oywa2 148 AHCISQWGHDFRPEYAALGQLR----QRFPTLPFMALTATADDTTRQDIVRLLGLN 199 (206)
T ss_dssp GGGGCTTSSCCCHHHHGGGGHH----HHCTTSCEEEEESCCCHHHHHHHHHHHTCC
T ss_pred eeeeeccccchHHHHHHHHHHH----HhCCCCceEEEEeCCCHHHHHHHHHHcCCC
Confidence 9999873 3222221 112221 223578999999999874 5789998754
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.77 E-value=5e-19 Score=205.68 Aligned_cols=169 Identities=15% Similarity=0.140 Sum_probs=120.0
Q ss_pred hHhhc-CCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHH
Q 000114 486 AQPAF-KGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVA 564 (2158)
Q Consensus 486 ~~~~f-~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~ 564 (2158)
++..| .++.+|+++|+++++.++.+. +++++||||+|||.+++++++..... +.+++||+|+++|+.
T Consensus 33 ~~~~~~~~~~~p~~~Q~~~i~~~l~g~-~~~i~apTGsGKT~~~~~~~~~~~~~-----------~~rvliv~Pt~~La~ 100 (237)
T d1gkub1 33 FVEFFRKCVGEPRAIQKMWAKRILRKE-SFAATAPTGVGKTSFGLAMSLFLALK-----------GKRCYVIFPTSLLVI 100 (237)
T ss_dssp HHHHHHTTTCSCCHHHHHHHHHHHTTC-CEECCCCBTSCSHHHHHHHHHHHHTT-----------SCCEEEEESCHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHCCC-CEEEEecCCChHHHHHHHHHHHHHHh-----------cCeEEEEeccHHHHH
Confidence 45556 678899999999999998875 59999999999999999999876643 237999999999999
Q ss_pred HHHHHHHhhcccCCcEE----EEEeCCCccCHh-----hhccccEEEcchhHHHHHHhccCCCccccccceEEeeccccc
Q 000114 565 EVVGNLSNRLQMYDVKV----RELSGDQTLTRQ-----QIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 565 q~~~~~~~~~~~~gi~v----~~l~Gd~~~~~~-----~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
|+++++++++..+++.+ ....++.....+ ....++|+|+||+.+ .+.. ..++++++|||||||.+
T Consensus 101 Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l---~~~~---~~~~~~~~vVvDE~d~~ 174 (237)
T d1gkub1 101 QAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFL---SKHY---RELGHFDFIFVDDVDAI 174 (237)
T ss_dssp HHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHH---HHCS---TTSCCCSEEEESCHHHH
T ss_pred HHHHHHHHHHHHcCCceEEEEeeeecccchhhhhhhhccccccceeccChHHH---HHhh---hhcCCCCEEEEEChhhh
Confidence 99999999887766543 333444332221 124678999999964 3332 34567899999999988
Q ss_pred ccCChhhHHHHHHHH------HHHHhhccccccEEEEccccCCh
Q 000114 636 HDNRGPVLESIVART------VRQIETTKEHIRLVGLSATLPNY 673 (2158)
Q Consensus 636 ~d~rg~~le~iv~r~------~~~~~~~~~~~riv~lSATlpn~ 673 (2158)
.+.. ..+..++..+ ...........+++++|||+++.
T Consensus 175 l~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 217 (237)
T d1gkub1 175 LKAS-KNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKG 217 (237)
T ss_dssp HTST-HHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCC
T ss_pred hhcc-cchhHHHHhcCChHHHHHHHhhCCCCCeEEEEeCCCCcc
Confidence 6532 1222222211 00111224456799999999863
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.76 E-value=9.6e-19 Score=203.25 Aligned_cols=180 Identities=13% Similarity=0.127 Sum_probs=124.4
Q ss_pred hHHHHHhc-CCCCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHH
Q 000114 1330 PLYEALYQ-GFKHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYR 1408 (2158)
Q Consensus 1330 ~~~~~l~~-gf~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~ 1408 (2158)
+.++++|. ++.+|+++|.++++.++.+ ++++++||||||||++++++++..... ++ +++||+|+++|+.|+++
T Consensus 31 ~~~~~~~~~~~~~p~~~Q~~~i~~~l~g-~~~~i~apTGsGKT~~~~~~~~~~~~~---~~--rvliv~Pt~~La~Q~~~ 104 (237)
T d1gkub1 31 KEFVEFFRKCVGEPRAIQKMWAKRILRK-ESFAATAPTGVGKTSFGLAMSLFLALK---GK--RCYVIFPTSLLVIQAAE 104 (237)
T ss_dssp HHHHHHHHTTTCSCCHHHHHHHHHHHTT-CCEECCCCBTSCSHHHHHHHHHHHHTT---SC--CEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHCC-CCEEEEecCCChHHHHHHHHHHHHHHh---cC--eEEEEeccHHHHHHHHH
Confidence 34677776 6889999999999999975 459999999999999999998876544 44 89999999999999999
Q ss_pred HHHHHhcCCCCcE----EEEEcCCcchh-----hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCC
Q 000114 1409 DWEIKFGQGLGMR----VVELTGETAMD-----LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQ 1479 (2158)
Q Consensus 1409 ~~~~~f~~~~g~~----v~~ltG~~~~~-----~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~ 1479 (2158)
++++.+. ..+++ +....++.... ......++|+|+||+++.. . ...+++++++||||||.+.+.
T Consensus 105 ~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~---~---~~~~~~~~~vVvDE~d~~l~~ 177 (237)
T d1gkub1 105 TIRKYAE-KAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSK---H---YRELGHFDFIFVDDVDAILKA 177 (237)
T ss_dssp HHHHHHT-TTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHH---C---STTSCCCSEEEESCHHHHHTS
T ss_pred HHHHHHH-HcCCceEEEEeeeecccchhhhhhhhccccccceeccChHHHHH---h---hhhcCCCCEEEEEChhhhhhc
Confidence 9995443 33433 34444443322 1233456999999997542 2 234678999999999988653
Q ss_pred CCChHHHHHHHH------HHHHhhcCCCceEEEeccCCCCh---HHHHHHhcc
Q 000114 1480 GGPVLEVIVSRM------RYIASQVENKIRIVALSTSLANA---KDLGEWIGA 1523 (2158)
Q Consensus 1480 ~g~~~e~~isrl------~~i~~~~~~~~riV~lSATl~n~---~dl~~wl~~ 1523 (2158)
. .........+ ..+....+...+++++|||+++. .-+.+++|-
T Consensus 178 ~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~l~r~ll~f 229 (237)
T d1gkub1 178 S-KNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNF 229 (237)
T ss_dssp T-HHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCC
T ss_pred c-cchhHHHHhcCChHHHHHHHhhCCCCCeEEEEeCCCCcccHHHHHHHHhCC
Confidence 2 2222222221 11122234567899999999763 223455553
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=2.7e-18 Score=186.00 Aligned_cols=120 Identities=18% Similarity=0.351 Sum_probs=100.6
Q ss_pred HHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHH
Q 000114 728 VAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRG 807 (2158)
Q Consensus 728 ~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~ 807 (2158)
.+.....++||||+|+..++.++..|...+. .+..+||+|++.
T Consensus 22 l~~~~~~k~iIF~~s~~~~~~l~~~L~~~~~-------------------------------------~~~~~~~~~~~~ 64 (162)
T d1fuka_ 22 YDSISVTQAVIFCNTRRKVEELTTKLRNDKF-------------------------------------TVSAIYSDLPQQ 64 (162)
T ss_dssp HHHTTCSCEEEEESSHHHHHHHHHHHHHTTC-------------------------------------CEEEECTTSCHH
T ss_pred HHhCCCCcEEEEEEEEchHHHHHHHHhhcCc-------------------------------------eEEEeccCCchh
Confidence 3445678999999999999999999887553 356779999999
Q ss_pred HHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcC
Q 000114 808 DRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887 (2158)
Q Consensus 808 ~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~ 887 (2158)
+|..+++.|+.|.++|||||+++++|+|+|++++||+ ||+|. ++..|+||+||+||.| ..|.|+.+++
T Consensus 65 ~r~~~l~~f~~~~~~iLv~Tdv~~rGiDi~~v~~VI~----~d~P~------~~~~yihR~GR~gR~g--~~g~~i~~~~ 132 (162)
T d1fuka_ 65 ERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN----YDLPA------NKENYIHRIGRGGRFG--RKGVAINFVT 132 (162)
T ss_dssp HHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEE----SSCCS------SGGGGGGSSCSCC-------CEEEEEEE
T ss_pred hHHHHHHHHhhcccceeeccccccccccCCCceEEEE----eccch------hHHHHHhhccccccCC--CccEEEEEcC
Confidence 9999999999999999999999999999999999999 66554 6668999999999987 6799999999
Q ss_pred CCcHHHHHH
Q 000114 888 HSELRYYLS 896 (2158)
Q Consensus 888 ~~~~~~y~~ 896 (2158)
+.+...+..
T Consensus 133 ~~d~~~~~~ 141 (162)
T d1fuka_ 133 NEDVGAMRE 141 (162)
T ss_dssp TTTHHHHHH
T ss_pred HHHHHHHHH
Confidence 888765544
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=4.2e-18 Score=190.42 Aligned_cols=125 Identities=20% Similarity=0.353 Sum_probs=110.6
Q ss_pred HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHH
Q 000114 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2158)
Q Consensus 729 ~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~ 808 (2158)
....+.++||||+|++.++.++..|...++ .+..+||+|+..+
T Consensus 26 ~~~~~~~~IIF~~t~~~~~~l~~~l~~~~~-------------------------------------~~~~~h~~~~~~~ 68 (200)
T d1oywa3 26 QEQRGKSGIIYCNSRAKVEDTAARLQSKGI-------------------------------------SAAAYHAGLENNV 68 (200)
T ss_dssp HHTTTCCEEEECSSHHHHHHHHHHHHHTTC-------------------------------------CEEEECTTSCHHH
T ss_pred HhcCCCCEEEEEeeehhhHHhhhhhccCCc-------------------------------------eeEEecCCCcHHH
Confidence 334567899999999999999998887542 3567799999999
Q ss_pred HHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCC
Q 000114 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGH 888 (2158)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~ 888 (2158)
|..+++.|++|+++|||||+++++|||+|++++||+ |++|. ++.+|+||+|||||.| ..|.+++++++
T Consensus 69 r~~~~~~f~~g~~~ilvaTd~~~~GiD~p~v~~VI~----~~~P~------~~~~y~qr~GR~gR~g--~~g~ai~~~~~ 136 (200)
T d1oywa3 69 RADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVH----FDIPR------NIESYYQETGRAGRDG--LPAEAMLFYDP 136 (200)
T ss_dssp HHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEE----SSCCS------SHHHHHHHHTTSCTTS--SCEEEEEEECH
T ss_pred HHHHHHHHhcccceEEEecchhhhccCCCCCCEEEE----CCCcc------chHHHHHHhhhhhcCC--CCceEEEecCH
Confidence 999999999999999999999999999999999999 77776 8889999999999987 67999999999
Q ss_pred CcHHHHHHhhcCCC
Q 000114 889 SELRYYLSLMNQQL 902 (2158)
Q Consensus 889 ~~~~~y~~ll~~~~ 902 (2158)
.+...+.+++.+..
T Consensus 137 ~d~~~l~~~i~~~~ 150 (200)
T d1oywa3 137 ADMAWLRRCLEEKP 150 (200)
T ss_dssp HHHHHHHHHHHTSC
T ss_pred HHHHHHHhhhhccc
Confidence 98888887765543
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=8e-18 Score=183.20 Aligned_cols=141 Identities=21% Similarity=0.391 Sum_probs=114.1
Q ss_pred ceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHh
Q 000114 700 LSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQS 779 (2158)
Q Consensus 700 l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~ 779 (2158)
+.+.++.+... ..++..+.+ +.+.....++||||++++.+..++..|...+..
T Consensus 8 i~q~~v~v~~~--~~K~~~L~~-----ll~~~~~~k~iiF~~~~~~~~~~~~~l~~~~~~-------------------- 60 (168)
T d2j0sa2 8 IKQFFVAVERE--EWKFDTLCD-----LYDTLTITQAVIFCNTKRKVDWLTEKMREANFT-------------------- 60 (168)
T ss_dssp EEEEEEEESST--THHHHHHHH-----HHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCC--------------------
T ss_pred cEEEEEEecCh--HHHHHHHHH-----HHHhCCCCceEEEeeeHHHHHHHHHHhhhcccc--------------------
Confidence 44555544332 234444333 234455789999999999999999998875532
Q ss_pred hhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccC
Q 000114 780 HTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTEL 859 (2158)
Q Consensus 780 ~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~ 859 (2158)
+..+||+|+..+|..+++.|++|+++|||||+++++|+|+|++++||+ ||+|.
T Consensus 61 -----------------~~~~~~~~~~~~r~~~~~~fk~g~~~iLv~Td~~~rGiDi~~v~~VIn----~d~P~------ 113 (168)
T d2j0sa2 61 -----------------VSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN----YDLPN------ 113 (168)
T ss_dssp -----------------CEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE----SSCCS------
T ss_pred -----------------hhhhhhhhhHHHHHHHHHHHhcCCccEEeccchhcccccccCcceEEE----ecCCc------
Confidence 456799999999999999999999999999999999999999999999 77776
Q ss_pred CHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHH
Q 000114 860 SPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLS 896 (2158)
Q Consensus 860 s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ 896 (2158)
++..|+||+||+||.| ..|.++.++++.+...+..
T Consensus 114 ~~~~yihR~GR~gR~g--~~G~~i~~~~~~d~~~~~~ 148 (168)
T d2j0sa2 114 NRELYIHRIGRSGRYG--RKGVAINFVKNDDIRILRD 148 (168)
T ss_dssp SHHHHHHHHTTSSGGG--CCEEEEEEEEGGGHHHHHH
T ss_pred CHHHHHhhhccccccC--CCcEEEEEECHHHHHHHHH
Confidence 7889999999999977 6799999999888765543
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=1.2e-17 Score=182.95 Aligned_cols=140 Identities=24% Similarity=0.371 Sum_probs=114.4
Q ss_pred ceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHh
Q 000114 700 LSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQS 779 (2158)
Q Consensus 700 l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~ 779 (2158)
+.+.++.++.. .+...+.+ +++..+.+++||||++++.+..++..|...+.
T Consensus 7 i~q~yi~v~~~---~K~~~L~~-----ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~g~--------------------- 57 (171)
T d1s2ma2 7 ITQYYAFVEER---QKLHCLNT-----LFSKLQINQAIIFCNSTNRVELLAKKITDLGY--------------------- 57 (171)
T ss_dssp EEEEEEECCGG---GHHHHHHH-----HHHHSCCSEEEEECSSHHHHHHHHHHHHHHTC---------------------
T ss_pred eEEEEEEcCHH---HHHHHHHH-----HHHhCCCCceEEEEeeeehhhHhHHhhhcccc---------------------
Confidence 44555544432 34443333 23445678999999999999999999987643
Q ss_pred hhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccC
Q 000114 780 HTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTEL 859 (2158)
Q Consensus 780 ~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~ 859 (2158)
.+..+||+|+..+|..+++.|++|.++|||||+++++|+|+|++++||+ ||+|.
T Consensus 58 ----------------~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~Td~~~~Gid~~~v~~VI~----~d~p~------ 111 (171)
T d1s2ma2 58 ----------------SCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN----FDFPK------ 111 (171)
T ss_dssp ----------------CEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEE----SSCCS------
T ss_pred ----------------cccccccccchhhhhhhhhhcccCccccccchhHhhhccccceeEEEEe----cCCcc------
Confidence 3566799999999999999999999999999999999999999999999 77775
Q ss_pred CHHHHHHhhcccCCCCCCCccEEEEEcCCCcHHHHHH
Q 000114 860 SPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLS 896 (2158)
Q Consensus 860 s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~~y~~ 896 (2158)
++.+|+||+||+||.| ..|.++.+++..+...+..
T Consensus 112 ~~~~y~qr~GR~gR~g--~~g~~i~~v~~~e~~~~~~ 146 (171)
T d1s2ma2 112 TAETYLHRIGRSGRFG--HLGLAINLINWNDRFNLYK 146 (171)
T ss_dssp SHHHHHHHHCBSSCTT--CCEEEEEEECGGGHHHHHH
T ss_pred hHHHHHHHhhhcccCC--CccEEEEEeCHHHHHHHHH
Confidence 7889999999999976 6799999999988766554
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=3e-17 Score=183.41 Aligned_cols=124 Identities=17% Similarity=0.238 Sum_probs=110.5
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
.++.++||||+|++.|+.++..|.. .+..+..+||+|+..+|..+
T Consensus 28 ~~~~~~IIF~~t~~~~~~l~~~l~~-----------------------------------~~~~~~~~h~~~~~~~r~~~ 72 (200)
T d1oywa3 28 QRGKSGIIYCNSRAKVEDTAARLQS-----------------------------------KGISAAAYHAGLENNVRADV 72 (200)
T ss_dssp TTTCCEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTTSCHHHHHHH
T ss_pred cCCCCEEEEEeeehhhHHhhhhhcc-----------------------------------CCceeEEecCCCcHHHHHHH
Confidence 4567899999999999999866532 34568999999999999999
Q ss_pred HHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH
Q 000114 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2158)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~ 1731 (2158)
++.|++|+++|||||+++++|||+|++.+|| |+..|.++.+|+||+|||||.| ..|.|++++.+.+..
T Consensus 73 ~~~f~~g~~~ilvaTd~~~~GiD~p~v~~VI----------~~~~P~~~~~y~qr~GR~gR~g--~~g~ai~~~~~~d~~ 140 (200)
T d1oywa3 73 QEKFQRDDLQIVVATVAFGMGINKPNVRFVV----------HFDIPRNIESYYQETGRAGRDG--LPAEAMLFYDPADMA 140 (200)
T ss_dssp HHHHHTTSCSEEEECTTSCTTTCCTTCCEEE----------ESSCCSSHHHHHHHHTTSCTTS--SCEEEEEEECHHHHH
T ss_pred HHHHhcccceEEEecchhhhccCCCCCCEEE----------ECCCccchHHHHHHhhhhhcCC--CCceEEEecCHHHHH
Confidence 9999999999999999999999999999999 7888999999999999999987 789999999988888
Q ss_pred HHHHHhhCCCc
Q 000114 1732 YYKKFLYDAFP 1742 (2158)
Q Consensus 1732 ~~~k~l~~~~p 1742 (2158)
++++++.+...
T Consensus 141 ~l~~~i~~~~~ 151 (200)
T d1oywa3 141 WLRRCLEEKPQ 151 (200)
T ss_dssp HHHHHHHTSCC
T ss_pred HHHhhhhcccc
Confidence 88888765433
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.72 E-value=1.4e-17 Score=179.44 Aligned_cols=114 Identities=23% Similarity=0.461 Sum_probs=102.0
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHH
Q 000114 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2158)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v 812 (2158)
+.++||||+|++.|..++..|...+. .+..+|++++..+|..+
T Consensus 28 ~~k~IIF~~s~~~~~~l~~~L~~~g~-------------------------------------~~~~~~~~~~~~~r~~~ 70 (155)
T d1hv8a2 28 EFYGLVFCKTKRDTKELASMLRDIGF-------------------------------------KAGAIHGDLSQSQREKV 70 (155)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTC-------------------------------------CEEEECSSSCHHHHHHH
T ss_pred CCCEEEEECchHHHHHHHhhhccccc-------------------------------------ccccccccchhhhhhhh
Confidence 56899999999999999999987543 35677999999999999
Q ss_pred HHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCcHH
Q 000114 813 EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELR 892 (2158)
Q Consensus 813 ~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~~~ 892 (2158)
++.|++|..+|||||+++++|+|+|++++||+ ||+|. |+.+|+||+||+||.| ..|.++.+++..+..
T Consensus 71 ~~~f~~~~~~ilv~T~~~~~Gid~~~v~~Vi~----~d~p~------~~~~y~qr~GR~gR~g--~~g~~i~~~~~~d~~ 138 (155)
T d1hv8a2 71 IRLFKQKKIRILIATDVMSRGIDVNDLNCVIN----YHLPQ------NPESYMHRIGRTGRAG--KKGKAISIINRREYK 138 (155)
T ss_dssp HHHHHTTSSSEEEECTTHHHHCCCSCCSEEEE----SSCCS------CHHHHHHHSTTTCCSS--SCCEEEEEECTTSHH
T ss_pred hhhhhcccceeeeehhHHhhhhhhccCcEEEE----ecCCC------CHHHHHHHHHhcCcCC--CCceEEEEEchHHHH
Confidence 99999999999999999999999999999999 77775 8889999999999987 679999999888766
Q ss_pred HHH
Q 000114 893 YYL 895 (2158)
Q Consensus 893 ~y~ 895 (2158)
.+.
T Consensus 139 ~~~ 141 (155)
T d1hv8a2 139 KLR 141 (155)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.72 E-value=2.5e-17 Score=177.04 Aligned_cols=115 Identities=19% Similarity=0.235 Sum_probs=99.7
Q ss_pred hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHH
Q 000114 731 AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810 (2158)
Q Consensus 731 ~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~ 810 (2158)
..+.++||||+|++.|+.++..|...|+.+ .++||+|++.+|.
T Consensus 29 ~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a-------------------------------------~~~Hg~~~~~eR~ 71 (174)
T d1c4oa2 29 ARGERTLVTVLTVRMAEELTSFLVEHGIRA-------------------------------------RYLHHELDAFKRQ 71 (174)
T ss_dssp HTTCEEEEECSSHHHHHHHHHHHHHTTCCE-------------------------------------EEECTTCCHHHHH
T ss_pred hcCCcEEEEEcchhHHHHHHHHHHhcCCce-------------------------------------EEEecccchHHHH
Confidence 447899999999999999999999877543 4569999999999
Q ss_pred HHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCc
Q 000114 811 LVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2158)
Q Consensus 811 ~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (2158)
.+++.|++|+++|||||+++++|+|+|++++||+ |++++. ....|..+|+||+|||||.| .|.+++++....
T Consensus 72 ~~l~~F~~G~~~vLVaT~v~~~GiDip~V~~Vi~----~~~~~~-~~~~~~~~~iq~~GR~gR~~---~g~~~~~~~~~~ 143 (174)
T d1c4oa2 72 ALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAI----LDADKE-GFLRSERSLIQTIGRAARNA---RGEVWLYADRVS 143 (174)
T ss_dssp HHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEE----TTTTSC-SGGGSHHHHHHHHGGGTTST---TCEEEEECSSCC
T ss_pred HHHHHHHCCCeEEEEeeeeeeeeccCCCCcEEEE----eccccc-cccchhHHHHHHhhhhhhcC---CCeeEEeecCCC
Confidence 9999999999999999999999999999999999 776642 23457889999999999975 488888876544
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2.4e-17 Score=179.68 Aligned_cols=134 Identities=22% Similarity=0.323 Sum_probs=109.2
Q ss_pred ceeEEEeeccCChhHHHHHhhHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHh
Q 000114 700 LSQQYIGIQVKKPLQRFQLMNDLCYEKVVAVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQS 779 (2158)
Q Consensus 700 l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~ 779 (2158)
+.++|+.+... .+...+.+ +++....+++||||++++.+..++..|...+.
T Consensus 2 l~q~~v~~~~~---~K~~~L~~-----ll~~~~~~k~iIF~~~~~~~~~l~~~L~~~~~--------------------- 52 (168)
T d1t5ia_ 2 LQQYYVKLKDN---EKNRKLFD-----LLDVLEFNQVVIFVKSVQRCIALAQLLVEQNF--------------------- 52 (168)
T ss_dssp CEEEEEECCGG---GHHHHHHH-----HHHHSCCSSEEEECSSHHHHHHHHHHHHHTTC---------------------
T ss_pred cEEEEEEeChH---HHHHHHHH-----HHHhCCCCeEEEEEeeeecchhhhhhhccccc---------------------
Confidence 45566655543 33333332 23444577999999999999999999877543
Q ss_pred hhhccCcchhhhhccCCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccC
Q 000114 780 HTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTEL 859 (2158)
Q Consensus 780 ~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~ 859 (2158)
.+.++||+|+..+|..+++.|++|.++|||||+++++|+|+|.+++||+ |++|.
T Consensus 53 ----------------~~~~ihg~~~~~~r~~~l~~F~~g~~~iLv~T~~~~~Gid~~~~~~vi~----~~~p~------ 106 (168)
T d1t5ia_ 53 ----------------PAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN----YDMPE------ 106 (168)
T ss_dssp ----------------CEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE----SSCCS------
T ss_pred ----------------cccccccccchhhhhhhhhhhccccceeeeccccccchhhcccchhhhh----hhccc------
Confidence 3567799999999999999999999999999999999999999999999 77775
Q ss_pred CHHHHHHhhcccCCCCCCCccEEEEEcCCCc
Q 000114 860 SPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2158)
Q Consensus 860 s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (2158)
++..|+||+|||||.| ..|.||.++++.+
T Consensus 107 ~~~~yiqr~GR~gR~g--~~g~~i~l~~~~~ 135 (168)
T d1t5ia_ 107 DSDTYLHRVARAGRFG--TKGLAITFVSDEN 135 (168)
T ss_dssp SHHHHHHHHHHHTGGG--CCCEEEEEECSHH
T ss_pred chhhHhhhhhhcccCC--CccEEEEEECchH
Confidence 7889999999999976 6799999887754
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.69 E-value=1.2e-16 Score=171.75 Aligned_cols=131 Identities=16% Similarity=0.175 Sum_probs=107.4
Q ss_pred HHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCC
Q 000114 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (2158)
Q Consensus 1563 ~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~ 1642 (2158)
.+..+.+....++++||||+|++.|+.++..|.. .+..+.++||+
T Consensus 20 ll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~-----------------------------------~Gi~a~~~Hg~ 64 (174)
T d1c4oa2 20 LMEGIRERAARGERTLVTVLTVRMAEELTSFLVE-----------------------------------HGIRARYLHHE 64 (174)
T ss_dssp HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTT
T ss_pred HHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHh-----------------------------------cCCceEEEecc
Confidence 4455666657789999999999999999976632 35568999999
Q ss_pred CCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEE
Q 000114 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2158)
Q Consensus 1643 l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~i 1722 (2158)
|+..+|..+++.|++|+++|||||+++++|+|+|++.+|| .|++.. ...+.+..+|+||+|||||.| .|.++
T Consensus 65 ~~~~eR~~~l~~F~~G~~~vLVaT~v~~~GiDip~V~~Vi----~~~~~~-~~~~~~~~~~iq~~GR~gR~~---~g~~~ 136 (174)
T d1c4oa2 65 LDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVA----ILDADK-EGFLRSERSLIQTIGRAARNA---RGEVW 136 (174)
T ss_dssp CCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEE----ETTTTS-CSGGGSHHHHHHHHGGGTTST---TCEEE
T ss_pred cchHHHHHHHHHHHCCCeEEEEeeeeeeeeccCCCCcEEE----Eecccc-ccccchhHHHHHHhhhhhhcC---CCeeE
Confidence 9999999999999999999999999999999999999999 455442 345678899999999999965 68888
Q ss_pred EEecCChHHHHHHHh
Q 000114 1723 ILCHAPRKEYYKKFL 1737 (2158)
Q Consensus 1723 il~~~~~~~~~~k~l 1737 (2158)
+++..... .+++.+
T Consensus 137 ~~~~~~~~-~~~~~i 150 (174)
T d1c4oa2 137 LYADRVSE-AMQRAI 150 (174)
T ss_dssp EECSSCCH-HHHHHH
T ss_pred EeecCCCH-HHHHHH
Confidence 88876553 344433
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.68 E-value=5.1e-17 Score=175.83 Aligned_cols=116 Identities=13% Similarity=0.225 Sum_probs=99.2
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
.+..++||||+|++.|+.++..|.. .+..+..+||+|+..+|..+
T Consensus 25 ~~~~k~iIF~~s~~~~~~l~~~L~~-----------------------------------~~~~~~~~~~~~~~~~r~~~ 69 (162)
T d1fuka_ 25 ISVTQAVIFCNTRRKVEELTTKLRN-----------------------------------DKFTVSAIYSDLPQQERDTI 69 (162)
T ss_dssp TTCSCEEEEESSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTTSCHHHHHHH
T ss_pred CCCCcEEEEEEEEchHHHHHHHHhh-----------------------------------cCceEEEeccCCchhhHHHH
Confidence 4568899999999999999876632 34568999999999999999
Q ss_pred HHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH
Q 000114 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2158)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~ 1731 (2158)
++.|+.|+.+|||||+++++|+|+|++.+|| +++.|.++..|+||+||+||.| ..|.|+.++.+.+..
T Consensus 70 l~~f~~~~~~iLv~Tdv~~rGiDi~~v~~VI----------~~d~P~~~~~yihR~GR~gR~g--~~g~~i~~~~~~d~~ 137 (162)
T d1fuka_ 70 MKEFRSGSSRILISTDLLARGIDVQQVSLVI----------NYDLPANKENYIHRIGRGGRFG--RKGVAINFVTNEDVG 137 (162)
T ss_dssp HHHHHTTSCSEEEEEGGGTTTCCCCSCSEEE----------ESSCCSSGGGGGGSSCSCC-------CEEEEEEETTTHH
T ss_pred HHHHhhcccceeeccccccccccCCCceEEE----------EeccchhHHHHHhhccccccCC--CccEEEEEcCHHHHH
Confidence 9999999999999999999999999999999 7888889999999999999987 689999999887655
Q ss_pred HHH
Q 000114 1732 YYK 1734 (2158)
Q Consensus 1732 ~~~ 1734 (2158)
++.
T Consensus 138 ~~~ 140 (162)
T d1fuka_ 138 AMR 140 (162)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.2e-16 Score=173.85 Aligned_cols=116 Identities=12% Similarity=0.212 Sum_probs=103.1
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
.+..++||||++++.|+.++..|.. .+..+..+||+++..+|..+
T Consensus 32 ~~~~k~iiF~~~~~~~~~~~~~l~~-----------------------------------~~~~~~~~~~~~~~~~r~~~ 76 (168)
T d2j0sa2 32 LTITQAVIFCNTKRKVDWLTEKMRE-----------------------------------ANFTVSSMHGDMPQKERESI 76 (168)
T ss_dssp HTSSEEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCCEEECTTSCHHHHHHH
T ss_pred CCCCceEEEeeeHHHHHHHHHHhhh-----------------------------------cccchhhhhhhhhHHHHHHH
Confidence 4567899999999999998866632 34568899999999999999
Q ss_pred HHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH
Q 000114 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2158)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~ 1731 (2158)
++.|++|+++|||||+++++|+|+|++.+|| |++.|.+...|+||+||+||.| ..|.|+.++.+.+..
T Consensus 77 ~~~fk~g~~~iLv~Td~~~rGiDi~~v~~VI----------n~d~P~~~~~yihR~GR~gR~g--~~G~~i~~~~~~d~~ 144 (168)
T d2j0sa2 77 MKEFRSGASRVLISTDVWARGLDVPQVSLII----------NYDLPNNRELYIHRIGRSGRYG--RKGVAINFVKNDDIR 144 (168)
T ss_dssp HHHHHHTSSCEEEECGGGSSSCCCTTEEEEE----------ESSCCSSHHHHHHHHTTSSGGG--CCEEEEEEEEGGGHH
T ss_pred HHHHhcCCccEEeccchhcccccccCcceEE----------EecCCcCHHHHHhhhccccccC--CCcEEEEEECHHHHH
Confidence 9999999999999999999999999999999 7888889999999999999986 789999999888765
Q ss_pred HHH
Q 000114 1732 YYK 1734 (2158)
Q Consensus 1732 ~~~ 1734 (2158)
.++
T Consensus 145 ~~~ 147 (168)
T d2j0sa2 145 ILR 147 (168)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.67 E-value=2e-16 Score=173.13 Aligned_cols=118 Identities=22% Similarity=0.258 Sum_probs=104.9
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
.+..++||||+|++.|..++..|.. .+..+..+||+|+..+|..+
T Consensus 30 ~~~~k~iVF~~~~~~~~~l~~~L~~-----------------------------------~g~~~~~~h~~~~~~~r~~~ 74 (171)
T d1s2ma2 30 LQINQAIIFCNSTNRVELLAKKITD-----------------------------------LGYSCYYSHARMKQQERNKV 74 (171)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHH-----------------------------------HTCCEEEECTTSCHHHHHHH
T ss_pred CCCCceEEEEeeeehhhHhHHhhhc-----------------------------------ccccccccccccchhhhhhh
Confidence 4667899999999999998866622 46678999999999999999
Q ss_pred HHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHH
Q 000114 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKE 1731 (2158)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~ 1731 (2158)
++.|++|..+|||||+++++|+|+|.+.+|| +++.|.++.+|+||+||+||.| ..|.|+.++.+.+..
T Consensus 75 ~~~f~~~~~~ilv~Td~~~~Gid~~~v~~VI----------~~d~p~~~~~y~qr~GR~gR~g--~~g~~i~~v~~~e~~ 142 (171)
T d1s2ma2 75 FHEFRQGKVRTLVCSDLLTRGIDIQAVNVVI----------NFDFPKTAETYLHRIGRSGRFG--HLGLAINLINWNDRF 142 (171)
T ss_dssp HHHHHTTSSSEEEESSCSSSSCCCTTEEEEE----------ESSCCSSHHHHHHHHCBSSCTT--CCEEEEEEECGGGHH
T ss_pred hhhcccCccccccchhHhhhccccceeEEEE----------ecCCcchHHHHHHHhhhcccCC--CccEEEEEeCHHHHH
Confidence 9999999999999999999999999999999 7788899999999999999986 789999999888766
Q ss_pred HHHHH
Q 000114 1732 YYKKF 1736 (2158)
Q Consensus 1732 ~~~k~ 1736 (2158)
.+.++
T Consensus 143 ~~~~i 147 (171)
T d1s2ma2 143 NLYKI 147 (171)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.67 E-value=1.3e-16 Score=174.45 Aligned_cols=113 Identities=19% Similarity=0.260 Sum_probs=94.7
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHH
Q 000114 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2158)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~ 811 (2158)
.+.++||||++++.++.++..|...++ .+.++||+|++.+|..
T Consensus 30 ~~~~~iif~~~~~~~~~~~~~l~~~g~-------------------------------------~~~~~hg~~~~~eR~~ 72 (181)
T d1t5la2 30 RNERTLVTTLTKKMAEDLTDYLKEAGI-------------------------------------KVAYLHSEIKTLERIE 72 (181)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHTTTC-------------------------------------CEEEECSSCCHHHHHH
T ss_pred cCCeEEEEeehhhhhHHHHHHHHhCCc-------------------------------------ceeEecCCccHHHHHH
Confidence 467999999999999999999987653 3567799999999999
Q ss_pred HHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCC
Q 000114 812 VEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2158)
Q Consensus 812 v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2158)
+++.|++|+++|||||+++++|+|+|++++||+ ||+|.. ....|..+|+||+|||||.| .|.++++....
T Consensus 73 ~l~~Fr~g~~~vLVaTdv~~rGiDip~v~~VI~----~d~p~~-~~~~s~~~yi~R~GRagR~g---~~~~~~~~~~~ 142 (181)
T d1t5la2 73 IIRDLRLGKYDVLVGINLLREGLDIPEVSLVAI----LDADKE-GFLRSERSLIQTIGRAARNA---NGHVIMYADTI 142 (181)
T ss_dssp HHHHHHHTSCSEEEESCCCSSSCCCTTEEEEEE----TTTTSC-SGGGSHHHHHHHHGGGTTST---TCEEEEECSSC
T ss_pred HHHHHHCCCCCEEEehhHHHccCCCCCCCEEEE----ecCCcc-cccccHHHHHHHHHhhcccc---CceeEeecchh
Confidence 999999999999999999999999999999999 555431 12347899999999999976 35555555443
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.65 E-value=2.5e-16 Score=169.48 Aligned_cols=115 Identities=21% Similarity=0.328 Sum_probs=101.6
Q ss_pred cCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHH
Q 000114 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2158)
Q Consensus 1573 ~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~ 1652 (2158)
.+.++||||+|++.|+.++..|.. .+..+..+|++++..+|..++
T Consensus 27 ~~~k~IIF~~s~~~~~~l~~~L~~-----------------------------------~g~~~~~~~~~~~~~~r~~~~ 71 (155)
T d1hv8a2 27 KEFYGLVFCKTKRDTKELASMLRD-----------------------------------IGFKAGAIHGDLSQSQREKVI 71 (155)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEECSSSCHHHHHHHH
T ss_pred CCCCEEEEECchHHHHHHHhhhcc-----------------------------------cccccccccccchhhhhhhhh
Confidence 456899999999999998866632 355689999999999999999
Q ss_pred HHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCChHHH
Q 000114 1653 ALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPRKEY 1732 (2158)
Q Consensus 1653 ~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~~~~ 1732 (2158)
+.|++|+.+|||||+++++|+|+|.+.+|| +++.|.++.+|+||+||+||.| ..|.++.++.+.+...
T Consensus 72 ~~f~~~~~~ilv~T~~~~~Gid~~~v~~Vi----------~~d~p~~~~~y~qr~GR~gR~g--~~g~~i~~~~~~d~~~ 139 (155)
T d1hv8a2 72 RLFKQKKIRILIATDVMSRGIDVNDLNCVI----------NYHLPQNPESYMHRIGRTGRAG--KKGKAISIINRREYKK 139 (155)
T ss_dssp HHHHTTSSSEEEECTTHHHHCCCSCCSEEE----------ESSCCSCHHHHHHHSTTTCCSS--SCCEEEEEECTTSHHH
T ss_pred hhhhcccceeeeehhHHhhhhhhccCcEEE----------EecCCCCHHHHHHHHHhcCcCC--CCceEEEEEchHHHHH
Confidence 999999999999999999999999999999 7788889999999999999987 6899999988876555
Q ss_pred HH
Q 000114 1733 YK 1734 (2158)
Q Consensus 1733 ~~ 1734 (2158)
++
T Consensus 140 ~~ 141 (155)
T d1hv8a2 140 LR 141 (155)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.65 E-value=4.5e-16 Score=170.22 Aligned_cols=123 Identities=18% Similarity=0.206 Sum_probs=99.0
Q ss_pred HHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCC
Q 000114 1564 FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGL 1643 (2158)
Q Consensus 1564 ~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l 1643 (2158)
+..+.+....+.++||||+++..++.++..|.. .+..+.++||+|
T Consensus 21 l~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~-----------------------------------~g~~~~~~hg~~ 65 (181)
T d1t5la2 21 IGEIRERVERNERTLVTTLTKKMAEDLTDYLKE-----------------------------------AGIKVAYLHSEI 65 (181)
T ss_dssp HHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHT-----------------------------------TTCCEEEECSSC
T ss_pred HHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHh-----------------------------------CCcceeEecCCc
Confidence 344555556788999999999999999866632 356699999999
Q ss_pred CHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEE
Q 000114 1644 NKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVI 1723 (2158)
Q Consensus 1644 ~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~ii 1723 (2158)
++.+|..+++.|++|+++|||||+++++|+|+|.+.+|| .||... ...+++..+|+||+|||||.| .|.+++
T Consensus 66 ~~~eR~~~l~~Fr~g~~~vLVaTdv~~rGiDip~v~~VI----~~d~p~-~~~~~s~~~yi~R~GRagR~g---~~~~~~ 137 (181)
T d1t5la2 66 KTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVA----ILDADK-EGFLRSERSLIQTIGRAARNA---NGHVIM 137 (181)
T ss_dssp CHHHHHHHHHHHHHTSCSEEEESCCCSSSCCCTTEEEEE----ETTTTS-CSGGGSHHHHHHHHGGGTTST---TCEEEE
T ss_pred cHHHHHHHHHHHHCCCCCEEEehhHHHccCCCCCCCEEE----EecCCc-ccccccHHHHHHHHHhhcccc---CceeEe
Confidence 999999999999999999999999999999999999999 344331 122357999999999999975 566666
Q ss_pred EecCCh
Q 000114 1724 LCHAPR 1729 (2158)
Q Consensus 1724 l~~~~~ 1729 (2158)
+.....
T Consensus 138 ~~~~~~ 143 (181)
T d1t5la2 138 YADTIT 143 (181)
T ss_dssp ECSSCC
T ss_pred ecchhh
Confidence 555443
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=8.5e-16 Score=167.23 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=97.9
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
...+++||||++++.+..++..|.. .+..+.++||+|+..+|..+
T Consensus 25 ~~~~k~iIF~~~~~~~~~l~~~L~~-----------------------------------~~~~~~~ihg~~~~~~r~~~ 69 (168)
T d1t5ia_ 25 LEFNQVVIFVKSVQRCIALAQLLVE-----------------------------------QNFPAIAIHRGMPQEERLSR 69 (168)
T ss_dssp SCCSSEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTTSCHHHHHHH
T ss_pred CCCCeEEEEEeeeecchhhhhhhcc-----------------------------------ccccccccccccchhhhhhh
Confidence 3567899999999999888865522 35668999999999999999
Q ss_pred HHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCCh
Q 000114 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~ 1729 (2158)
++.|++|.++|||||+++++|+|+|.+.+|| +++.|.++..|+||+|||||.| ..|.|+.++.+..
T Consensus 70 l~~F~~g~~~iLv~T~~~~~Gid~~~~~~vi----------~~~~p~~~~~yiqr~GR~gR~g--~~g~~i~l~~~~~ 135 (168)
T d1t5ia_ 70 YQQFKDFQRRILVATNLFGRGMDIERVNIAF----------NYDMPEDSDTYLHRVARAGRFG--TKGLAITFVSDEN 135 (168)
T ss_dssp HHHHHTTSCSEEEESSCCSTTCCGGGCSEEE----------ESSCCSSHHHHHHHHHHHTGGG--CCCEEEEEECSHH
T ss_pred hhhhccccceeeeccccccchhhcccchhhh----------hhhcccchhhHhhhhhhcccCC--CccEEEEEECchH
Confidence 9999999999999999999999999999888 6778889999999999999976 6899998887644
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.59 E-value=6e-16 Score=161.50 Aligned_cols=105 Identities=20% Similarity=0.200 Sum_probs=88.5
Q ss_pred hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHH
Q 000114 731 AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810 (2158)
Q Consensus 731 ~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~ 810 (2158)
..++++||||+|++.|+.++..|...+.. +..+|++|+..+
T Consensus 33 ~~~~k~IVFc~t~~~ae~la~~L~~~G~~-------------------------------------~~~~H~~~~~~~-- 73 (138)
T d1jr6a_ 33 IKGGRHLIFCHSKKKCDELAAKLVALGIN-------------------------------------AVAYYRGLDVSV-- 73 (138)
T ss_dssp HTTSCEEEECSCHHHHHHHHHHHHHHTCE-------------------------------------EEEECTTCCSCC--
T ss_pred cCCCCEEEEeCcHHHHHHHHHHHhccccc-------------------------------------hhhhhccchhhh--
Confidence 34789999999999999999999877643 445699998654
Q ss_pred HHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCCc
Q 000114 811 LVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSE 890 (2158)
Q Consensus 811 ~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~~ 890 (2158)
|++|+.+|||||+++++||| |++..||+.+..|++|. ++.+|+||+||||| | ..|. +.+..+.|
T Consensus 74 -----~~~~~~~vlvaTd~~~~GiD-~~v~~Vi~~~~~~~~P~------~~~~y~qr~GR~gR-g--~~G~-~~~i~~~e 137 (138)
T d1jr6a_ 74 -----IPTNGDVVVVATDALMTGFT-GDFDSVIDCNTSDGKPQ------DAVSRTQRRGRTGR-G--KPGI-YRFVAPGE 137 (138)
T ss_dssp -----CTTSSCEEEEESSSSCSSSC-CCBSEEEECSEETTEEC------CHHHHHHHHTTBCS-S--SCEE-EEECCSSC
T ss_pred -----hhhhhcceeehhHHHHhccc-cccceEEEEEecCCCCC------CHHHHHhHhccccC-C--CCcE-EEEEcCCC
Confidence 68899999999999999999 99999999888788776 89999999999999 7 6685 55655543
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.56 E-value=3.6e-15 Score=176.11 Aligned_cols=153 Identities=18% Similarity=0.277 Sum_probs=111.1
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.|+++|.+++..++..+ +.++.+|||+|||+++...+....... +.++|||+|+++|+.|++++|.+.+
T Consensus 113 ~~rdyQ~~av~~~l~~~-~~il~~pTGsGKT~i~~~i~~~~~~~~----------~~k~Liivp~~~Lv~Q~~~~f~~~~ 181 (282)
T d1rifa_ 113 EPHWYQKDAVFEGLVNR-RRILNLPTSAGRSLIQALLARYYLENY----------EGKILIIVPTTALTTQMADDFVDYR 181 (282)
T ss_dssp CCCHHHHHHHHHHHHHS-EEEECCCTTSCHHHHHHHHHHHHHHHC----------SSEEEEECSSHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHhcC-CceeEEEcccCccHHHHHHHHHhhhcc----------cceEEEEEcCchhHHHHHHHHHHhh
Confidence 69999999999998864 589999999999999876554443332 2389999999999999999999876
Q ss_pred ccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHH
Q 000114 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQI 654 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~ 654 (2158)
......+....++...........+|+|+|++.+ .+.. ..+++++++||+||||+.. +..+..++.++
T Consensus 182 ~~~~~~~~~~~~g~~~~~~~~~~~~i~i~t~qs~---~~~~--~~~~~~f~~VIvDEaH~~~---a~~~~~il~~~---- 249 (282)
T d1rifa_ 182 LFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTV---VKQP--KEWFSQFGMMMNDECHLAT---GKSISSIISGL---- 249 (282)
T ss_dssp SCCGGGEEECSTTCSSTTCCCTTCSEEEECHHHH---TTSC--GGGGGGEEEEEEETGGGCC---HHHHHHHTTTC----
T ss_pred ccccccceeecceecccccccccceEEEEeeehh---hhhc--ccccCCCCEEEEECCCCCC---chhHHHHHHhc----
Confidence 5444456666666554444445788999998853 2222 2467889999999999863 44454444322
Q ss_pred hhccccccEEEEccccCCh
Q 000114 655 ETTKEHIRLVGLSATLPNY 673 (2158)
Q Consensus 655 ~~~~~~~riv~lSATlpn~ 673 (2158)
......+|||||+++.
T Consensus 250 ---~~~~~rlGlTaT~~~~ 265 (282)
T d1rifa_ 250 ---NNCMFKFGLSGSLRDG 265 (282)
T ss_dssp ---TTCCEEEEECSSCCTT
T ss_pred ---cCCCeEEEEEeecCCC
Confidence 2222348999998753
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.54 E-value=1.1e-14 Score=171.85 Aligned_cols=153 Identities=18% Similarity=0.218 Sum_probs=109.9
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.++++|.+++..++. +++.++.+|||+|||+++...+...+.. ... ++|||+|+++|+.|+++++. .++.....
T Consensus 113 ~~rdyQ~~av~~~l~-~~~~il~~pTGsGKT~i~~~i~~~~~~~--~~~--k~Liivp~~~Lv~Q~~~~f~-~~~~~~~~ 186 (282)
T d1rifa_ 113 EPHWYQKDAVFEGLV-NRRRILNLPTSAGRSLIQALLARYYLEN--YEG--KILIIVPTTALTTQMADDFV-DYRLFSHA 186 (282)
T ss_dssp CCCHHHHHHHHHHHH-HSEEEECCCTTSCHHHHHHHHHHHHHHH--CSS--EEEEECSSHHHHHHHHHHHH-HHTSCCGG
T ss_pred ccchHHHHHHHHHHh-cCCceeEEEcccCccHHHHHHHHHhhhc--ccc--eEEEEEcCchhHHHHHHHHH-Hhhccccc
Confidence 699999999999987 4559999999999999986554333333 234 89999999999999999998 45443344
Q ss_pred EEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCC
Q 000114 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN 1500 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~ 1500 (2158)
.+..+.++...........+|+|+|++.+.... ...++++++||+||||+.. +..+ ..+...+.+
T Consensus 187 ~~~~~~~g~~~~~~~~~~~~i~i~t~qs~~~~~-----~~~~~~f~~VIvDEaH~~~---a~~~-------~~il~~~~~ 251 (282)
T d1rifa_ 187 MIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQP-----KEWFSQFGMMMNDECHLAT---GKSI-------SSIISGLNN 251 (282)
T ss_dssp GEEECSTTCSSTTCCCTTCSEEEECHHHHTTSC-----GGGGGGEEEEEEETGGGCC---HHHH-------HHHTTTCTT
T ss_pred cceeecceecccccccccceEEEEeeehhhhhc-----ccccCCCCEEEEECCCCCC---chhH-------HHHHHhccC
Confidence 566677766655555567799999988754332 3356789999999999874 2222 223333332
Q ss_pred CceEEEeccCCCCh
Q 000114 1501 KIRIVALSTSLANA 1514 (2158)
Q Consensus 1501 ~~riV~lSATl~n~ 1514 (2158)
....+|||||+++.
T Consensus 252 ~~~rlGlTaT~~~~ 265 (282)
T d1rifa_ 252 CMFKFGLSGSLRDG 265 (282)
T ss_dssp CCEEEEECSSCCTT
T ss_pred CCeEEEEEeecCCC
Confidence 33348999998764
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.54 E-value=3.3e-15 Score=157.50 Aligned_cols=138 Identities=20% Similarity=0.194 Sum_probs=93.2
Q ss_pred HHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeC
Q 000114 507 ALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSG 586 (2158)
Q Consensus 507 ~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~G 586 (2158)
+++.+.+++++||||||||.+++.+++...... +.++++++|+++|+.|.++.+... +..+....+
T Consensus 3 ~l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~----------~~~vli~~p~~~l~~q~~~~~~~~----~~~~~~~~~ 68 (140)
T d1yksa1 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR----------RLRTLVLAPTRVVLSEMKEAFHGL----DVKFHTQAF 68 (140)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTTTS----CEEEESSCC
T ss_pred HHHcCCcEEEEcCCCCChhHHHHHHHHHHhhhc----------CceeeeeecchhHHHHHHHHhhhh----hhhhccccc
Confidence 456778999999999999999988877776553 347999999999999998776442 333332222
Q ss_pred CCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEE
Q 000114 587 DQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGL 666 (2158)
Q Consensus 587 d~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~l 666 (2158)
... ......+.++|...+ .+.......+.++++||+||||.+..... ....++... ....+.++|+|
T Consensus 69 ~~~----~~~~~~~~~~~~~~l---~~~~~~~~~~~~~~lvIiDEaH~~~~~~~-~~~~~~~~~-----~~~~~~~~l~l 135 (140)
T d1yksa1 69 SAH----GSGREVIDAMCHATL---TYRMLEPTRVVNWEVIIMDEAHFLDPASI-AARGWAAHR-----ARANESATILM 135 (140)
T ss_dssp CCC----CCSSCCEEEEEHHHH---HHHHTSSSCCCCCSEEEETTTTCCSHHHH-HHHHHHHHH-----HHTTSCEEEEE
T ss_pred ccc----cccccchhhhhHHHH---HHHHhccccccceeEEEEccccccChhhH-HHHHHHHHH-----hhCCCCCEEEE
Confidence 211 123456777777643 33334446778899999999998743322 122222221 12468999999
Q ss_pred ccccC
Q 000114 667 SATLP 671 (2158)
Q Consensus 667 SATlp 671 (2158)
|||+|
T Consensus 136 TATPp 140 (140)
T d1yksa1 136 TATPP 140 (140)
T ss_dssp CSSCT
T ss_pred EcCCC
Confidence 99986
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=1e-13 Score=156.48 Aligned_cols=155 Identities=19% Similarity=0.279 Sum_probs=118.8
Q ss_pred CCCHHHHHHHHHHHc---CC--CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSALS---SA--DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~---~~--~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~ 569 (2158)
.+|+-|.+++..+.. .+ .+.|+||.||||||.+|+.++...+..+ .++++++|+..|+.|.+++
T Consensus 55 ~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g-----------~qv~~l~Pt~~La~Q~~~~ 123 (233)
T d2eyqa3 55 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH-----------KQVAVLVPTTLLAQQHYDN 123 (233)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT-----------CEEEEECSSHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHHcC-----------CceEEEccHHHhHHHHHHH
Confidence 789999999987754 22 3689999999999999999999998653 4899999999999999999
Q ss_pred HHhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhh
Q 000114 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPV 642 (2158)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~ 642 (2158)
|++++..++++|..++|..+...+. .+..+|+|+|--- +. . ...+++++||||||-|..+-.
T Consensus 124 ~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~---l~-~---~~~f~~LgLiIiDEeH~fg~k---- 192 (233)
T d2eyqa3 124 FRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL---LQ-S---DVKFKDLGLLIVDEEHRFGVR---- 192 (233)
T ss_dssp HHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHH---HH-S---CCCCSSEEEEEEESGGGSCHH----
T ss_pred HHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhh---hc-c---CCccccccceeeechhhhhhH----
Confidence 9999999999999999988755432 2467999999652 22 1 135678999999999975421
Q ss_pred HHHHHHHHHHHHhhccccccEEEEccccCChHHHHHH
Q 000114 643 LESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALF 679 (2158)
Q Consensus 643 le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~ 679 (2158)
-+..+ .....++.++.+|||. -++.++.-
T Consensus 193 Q~~~l-------~~~~~~~~~l~~SATP-iprtl~~~ 221 (233)
T d2eyqa3 193 HKERI-------KAMRANVDILTLTATP-IPRTLNMA 221 (233)
T ss_dssp HHHHH-------HHHHTTSEEEEEESSC-CCHHHHHH
T ss_pred HHHHH-------HhhCCCCCEEEEecch-hHHHHHHH
Confidence 11111 1234578999999994 44544443
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.49 E-value=3.9e-14 Score=162.88 Aligned_cols=156 Identities=24% Similarity=0.329 Sum_probs=120.1
Q ss_pred CCCHHHHHHHHHHHc---CC--CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSALS---SA--DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGN 569 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~---~~--~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~ 569 (2158)
+||+-|.+|+..+.. ++ .+.|++|.||||||.+|+.+++..+..+ .++++++||..|+.|.+++
T Consensus 83 eLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g-----------~q~~~m~Pt~~La~Qh~~~ 151 (264)
T d1gm5a3 83 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG-----------FQTAFMVPTSILAIQHYRR 151 (264)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-----------SCEEEECSCHHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhcc-----------cceeEEeehHhhhHHHHHH
Confidence 689999999998864 22 3679999999999999999999998764 3799999999999999999
Q ss_pred HHhhcccCCcEEEEEeCCCccCHhh-------hccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccC-Chh
Q 000114 570 LSNRLQMYDVKVRELSGDQTLTRQQ-------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDN-RGP 641 (2158)
Q Consensus 570 ~~~~~~~~gi~v~~l~Gd~~~~~~~-------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~-rg~ 641 (2158)
|++++..+|+.+..++|+.+...+. .++.+|+|+|-- .+... ..+.++++|||||-|..+-. |..
T Consensus 152 ~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThs---l~~~~----~~f~~LglviiDEqH~fgv~Qr~~ 224 (264)
T d1gm5a3 152 TVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHA---LIQED----VHFKNLGLVIIDEQHRFGVKQREA 224 (264)
T ss_dssp HHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTT---HHHHC----CCCSCCCEEEEESCCCC-----CC
T ss_pred HHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeehH---HhcCC----CCccccceeeeccccccchhhHHH
Confidence 9999999999999999988765432 247899999976 23222 34678999999999987542 210
Q ss_pred hHHHHHHHHHHHHhhccccccEEEEccccCChHHHHHHHh
Q 000114 642 VLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLR 681 (2158)
Q Consensus 642 ~le~iv~r~~~~~~~~~~~~riv~lSATlpn~~dv~~~l~ 681 (2158)
......++.++.+||| |-++.++.-+.
T Consensus 225 ------------l~~~~~~~~~l~~SAT-Piprtl~~~~~ 251 (264)
T d1gm5a3 225 ------------LMNKGKMVDTLVMSAT-PIPRSMALAFY 251 (264)
T ss_dssp ------------CCSSSSCCCEEEEESS-CCCHHHHHHHT
T ss_pred ------------HHHhCcCCCEEEEECC-CCHHHHHHHHc
Confidence 1123457889999999 44455554443
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.48 E-value=2.2e-14 Score=151.04 Aligned_cols=138 Identities=14% Similarity=0.096 Sum_probs=92.6
Q ss_pred HhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchh
Q 000114 1353 LYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMD 1432 (2158)
Q Consensus 1353 l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~ 1432 (2158)
+++.+.+++++||||||||.++..+++..... .+. ++++++|+++++.|.++.+.. + +..+....+..
T Consensus 3 ~l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~--~~~--~vli~~p~~~l~~q~~~~~~~-~----~~~~~~~~~~~--- 70 (140)
T d1yksa1 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR--RRL--RTLVLAPTRVVLSEMKEAFHG-L----DVKFHTQAFSA--- 70 (140)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--TTC--CEEEEESSHHHHHHHHHHTTT-S----CEEEESSCCCC---
T ss_pred HHHcCCcEEEEcCCCCChhHHHHHHHHHHhhh--cCc--eeeeeecchhHHHHHHHHhhh-h----hhhhccccccc---
Confidence 46678899999999999999997777776655 233 899999999999998876641 1 23332222221
Q ss_pred hhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCC
Q 000114 1433 LKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2158)
Q Consensus 1433 ~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~ 1512 (2158)
.......+.+.|...+.. .+.....+.++++||+||||++..... .....+ ..+.. .++.++|+||||+|
T Consensus 71 -~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~lvIiDEaH~~~~~~~-~~~~~~---~~~~~--~~~~~~l~lTATPp 140 (140)
T d1yksa1 71 -HGSGREVIDAMCHATLTY---RMLEPTRVVNWEVIIMDEAHFLDPASI-AARGWA---AHRAR--ANESATILMTATPP 140 (140)
T ss_dssp -CCCSSCCEEEEEHHHHHH---HHTSSSCCCCCSEEEETTTTCCSHHHH-HHHHHH---HHHHH--TTSCEEEEECSSCT
T ss_pred -ccccccchhhhhHHHHHH---HHhccccccceeEEEEccccccChhhH-HHHHHH---HHHhh--CCCCCEEEEEcCCC
Confidence 122345677888776543 333455788999999999998743321 111222 22211 35799999999986
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=3.6e-13 Score=151.82 Aligned_cols=160 Identities=19% Similarity=0.282 Sum_probs=118.9
Q ss_pred hHHHHHhcCC-CCCCHHHHHHHHHHhc-----CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHH
Q 000114 1330 PLYEALYQGF-KHFNPIQTQVFTVLYN-----TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALA 1403 (2158)
Q Consensus 1330 ~~~~~l~~gf-~~~~~iQ~q~~~~l~~-----~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa 1403 (2158)
+..+.+...+ ..+|+-|.+++..+.. ...+.+++|.||||||.+|+.++...+.. +. ++++++|+..|+
T Consensus 43 ~~~~~~~~~lP~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~---g~--qv~~l~Pt~~La 117 (233)
T d2eyqa3 43 EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HK--QVAVLVPTTLLA 117 (233)
T ss_dssp HHHHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TC--EEEEECSSHHHH
T ss_pred HHHHhhhhccccccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHHc---CC--ceEEEccHHHhH
Confidence 3344443443 3799999999988754 23478999999999999999999988865 55 999999999999
Q ss_pred HHHHHHHHHHhcCCCCcEEEEEcCCcchhhh-----cc--cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccc
Q 000114 1404 KERYRDWEIKFGQGLGMRVVELTGETAMDLK-----LL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLI 1476 (2158)
Q Consensus 1404 ~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~-----~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l 1476 (2158)
.|.+++++++|+.. +.++..++|..+...+ .+ ...+|||+|--. +. ....+++++|+||||-|..
T Consensus 118 ~Q~~~~~~~~~~~~-~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~----l~---~~~~f~~LgLiIiDEeH~f 189 (233)
T d2eyqa3 118 QQHYDNFRDRFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL----LQ---SDVKFKDLGLLIVDEEHRF 189 (233)
T ss_dssp HHHHHHHHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHH----HH---SCCCCSSEEEEEEESGGGS
T ss_pred HHHHHHHHHHHhhC-CCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhh----hc---cCCccccccceeeechhhh
Confidence 99999999888765 8899999998775422 22 244999999332 11 2345789999999999987
Q ss_pred cCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC
Q 000114 1477 GGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1477 ~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n 1513 (2158)
+-.. -..++.. ..++.++.+|||+..
T Consensus 190 g~kQ-------~~~l~~~----~~~~~~l~~SATPip 215 (233)
T d2eyqa3 190 GVRH-------KERIKAM----RANVDILTLTATPIP 215 (233)
T ss_dssp CHHH-------HHHHHHH----HTTSEEEEEESSCCC
T ss_pred hhHH-------HHHHHhh----CCCCCEEEEecchhH
Confidence 5211 0112221 347899999999754
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.47 E-value=2.1e-13 Score=156.72 Aligned_cols=158 Identities=23% Similarity=0.296 Sum_probs=117.2
Q ss_pred HHHHhcCCC-CCCHHHHHHHHHHhc-----CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHH
Q 000114 1332 YEALYQGFK-HFNPIQTQVFTVLYN-----TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKE 1405 (2158)
Q Consensus 1332 ~~~l~~gf~-~~~~iQ~q~~~~l~~-----~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q 1405 (2158)
...+...++ .+|+-|.+|+..+.. ...+.+++|.||||||.+|+.+++..+.. +. ++++++||..|+.|
T Consensus 73 ~~~f~~~LPFeLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~---g~--q~~~m~Pt~~La~Q 147 (264)
T d1gm5a3 73 AEEFIKSLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GF--QTAFMVPTSILAIQ 147 (264)
T ss_dssp HHHHHHHSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TS--CEEEECSCHHHHHH
T ss_pred HHHHHhhccccCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhc---cc--ceeEEeehHhhhHH
Confidence 334433333 799999999999864 23478999999999999999999988877 44 89999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEEcCCcchhhh-----cc--cCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccC
Q 000114 1406 RYRDWEIKFGQGLGMRVVELTGETAMDLK-----LL--EKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGG 1478 (2158)
Q Consensus 1406 ~~~~~~~~f~~~~g~~v~~ltG~~~~~~~-----~l--~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~ 1478 (2158)
.++.+++.|... |+++..++|+.+...+ .+ .+.+|||||-.- +. ....+++++++||||-|..+-
T Consensus 148 h~~~~~~~f~~~-~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl----~~---~~~~f~~LglviiDEqH~fgv 219 (264)
T d1gm5a3 148 HYRRTVESFSKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHAL----IQ---EDVHFKNLGLVIIDEQHRFGV 219 (264)
T ss_dssp HHHHHHHHHTCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTH----HH---HCCCCSCCCEEEEESCCCC--
T ss_pred HHHHHHHhhhhc-cccceeeccccchHHHHHHHHHHHCCCCCEEEeehHH----hc---CCCCccccceeeeccccccch
Confidence 999999999765 8899999998876422 22 245999999432 22 234567999999999998874
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC
Q 000114 1479 QGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1479 ~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n 1513 (2158)
.. |.. .......+.++.+|||+..
T Consensus 220 ~Q---------r~~--l~~~~~~~~~l~~SATPip 243 (264)
T d1gm5a3 220 KQ---------REA--LMNKGKMVDTLVMSATPIP 243 (264)
T ss_dssp ------------CC--CCSSSSCCCEEEEESSCCC
T ss_pred hh---------HHH--HHHhCcCCCEEEEECCCCH
Confidence 22 100 1112346889999999744
|
| >d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: RecQ helicase DNA-binding domain-like domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.46 E-value=2.6e-14 Score=135.49 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=73.2
Q ss_pred ccchhhH--hhHHHHHHHHHhccccChHHHHHHHHhhHHHHHhhcCCcccCCCccccccchhHHHHHHHHHHHHHHHHhH
Q 000114 904 IESQFVS--KLADQLNAEIVLGTVQNAKEACNWIGYTYLYIRMLRNPALYGLAPEVLKEDITLGERRADLVHTAATILDR 981 (2158)
Q Consensus 904 ieS~l~~--~l~d~lnaeI~~~~i~~~~~~~~wl~~t~~~~r~~~np~~y~~~~~~~~~~~~l~~~~~~li~~a~~~L~~ 981 (2158)
|+|+|.. .|.+|+|+||++|++.+.+|+++|+++||+|+|+..|| .++|+++++.|.+
T Consensus 2 i~S~L~~~~~L~~hllaeIasg~i~s~~e~~~~l~~Tf~~~q~~~~l--------------------~~~i~~~l~~L~~ 61 (85)
T d2p6ra1 2 ITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISL--------------------SYELERVVRQLEN 61 (85)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCC--------------------HHHHHHHHHHHHH
T ss_pred ceeCCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhHHHHhhhhcH--------------------HHHHHHHHHHHHH
Confidence 6777753 89999999999999999999999999999999986653 2578999999999
Q ss_pred CCCccccccCCccccChHHHHHHHhcc
Q 000114 982 NNLVKYDRKSGYFQVTDLGRIASYYYI 1008 (2158)
Q Consensus 982 ~~~i~~~~~~~~~~~T~lG~i~s~~yi 1008 (2158)
+|||+.+ +.+.||++|++||+|||
T Consensus 62 ~~~I~~~---~~l~aT~lGri~S~~YI 85 (85)
T d2p6ra1 62 WGMVVEA---AHLAPTKLGSLVSRLYI 85 (85)
T ss_dssp TTSEEES---SSEEECHHHHHHHHTTC
T ss_pred CCCcccc---cccccCHHHHHHHHHhC
Confidence 9999875 56999999999999997
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.45 E-value=1.4e-13 Score=155.19 Aligned_cols=136 Identities=28% Similarity=0.278 Sum_probs=97.5
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
+|+++|.+++..++.+ .+.++++|||+|||++++..+. .+ +.++||++|+++|+.|+.+.+....
T Consensus 70 ~Lr~yQ~eav~~~~~~-~~~ll~~~tG~GKT~~a~~~~~-~~-------------~~~~Liv~p~~~L~~q~~~~~~~~~ 134 (206)
T d2fz4a1 70 SLRDYQEKALERWLVD-KRGCIVLPTGSGKTHVAMAAIN-EL-------------STPTLIVVPTLALAEQWKERLGIFG 134 (206)
T ss_dssp CCCHHHHHHHHHHTTT-SEEEEEESSSTTHHHHHHHHHH-HS-------------CSCEEEEESSHHHHHHHHHHHGGGC
T ss_pred CcCHHHHHHHHHHHhC-CCcEEEeCCCCCceehHHhHHH-Hh-------------cCceeEEEcccchHHHHHHHHHhhc
Confidence 7999999999988765 4688999999999998765442 22 1269999999999999999997754
Q ss_pred ccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHH
Q 000114 575 QMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQI 654 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~ 654 (2158)
.. .++...|+.. ...+|+|+|.+.+...... ..+++++||+||||++.. ..+..++.
T Consensus 135 ~~---~~~~~~~~~~------~~~~i~i~t~~~~~~~~~~-----~~~~~~lvIiDEaH~~~a---~~~~~i~~------ 191 (206)
T d2fz4a1 135 EE---YVGEFSGRIK------ELKPLTVSTYDSAYVNAEK-----LGNRFMLLIFDEVHHLPA---ESYVQIAQ------ 191 (206)
T ss_dssp GG---GEEEESSSCB------CCCSEEEEEHHHHHHTHHH-----HTTTCSEEEEECSSCCCT---TTHHHHHH------
T ss_pred cc---chhhcccccc------cccccccceehhhhhhhHh-----hCCcCCEEEEECCeeCCc---HHHHHHHh------
Confidence 32 3556666543 2457999999875433322 335689999999999853 23333322
Q ss_pred hhccccccEEEEcccc
Q 000114 655 ETTKEHIRLVGLSATL 670 (2158)
Q Consensus 655 ~~~~~~~riv~lSATl 670 (2158)
.....+.+|||||+
T Consensus 192 --~~~~~~~lgLTATl 205 (206)
T d2fz4a1 192 --MSIAPFRLGLTATF 205 (206)
T ss_dssp --TCCCSEEEEEEESC
T ss_pred --ccCCCcEEEEecCC
Confidence 12344578999997
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.45 E-value=4.1e-14 Score=147.39 Aligned_cols=103 Identities=17% Similarity=0.117 Sum_probs=81.8
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
..++++||||+|++.|+.++..|.. .+..+..+|++|+.++
T Consensus 33 ~~~~k~IVFc~t~~~ae~la~~L~~-----------------------------------~G~~~~~~H~~~~~~~---- 73 (138)
T d1jr6a_ 33 IKGGRHLIFCHSKKKCDELAAKLVA-----------------------------------LGINAVAYYRGLDVSV---- 73 (138)
T ss_dssp HTTSCEEEECSCHHHHHHHHHHHHH-----------------------------------HTCEEEEECTTCCSCC----
T ss_pred cCCCCEEEEeCcHHHHHHHHHHHhc-----------------------------------cccchhhhhccchhhh----
Confidence 4578999999999999999976632 3566889999999765
Q ss_pred HHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecC
Q 000114 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHA 1727 (2158)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~ 1727 (2158)
|++|+.+|||||+++++|+| |++..|| .|+. ++..|.++.+|+||+||||| | ..|.+. +..+
T Consensus 74 ---~~~~~~~vlvaTd~~~~GiD-~~v~~Vi----~~~~--~~~~P~~~~~y~qr~GR~gR-g--~~G~~~-~i~~ 135 (138)
T d1jr6a_ 74 ---IPTNGDVVVVATDALMTGFT-GDFDSVI----DCNT--SDGKPQDAVSRTQRRGRTGR-G--KPGIYR-FVAP 135 (138)
T ss_dssp ---CTTSSCEEEEESSSSCSSSC-CCBSEEE----ECSE--ETTEECCHHHHHHHHTTBCS-S--SCEEEE-ECCS
T ss_pred ---hhhhhcceeehhHHHHhccc-cccceEE----EEEe--cCCCCCCHHHHHhHhccccC-C--CCcEEE-EEcC
Confidence 57899999999999999999 8888887 1111 13457789999999999999 5 688644 4443
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.45 E-value=6.4e-14 Score=166.78 Aligned_cols=119 Identities=21% Similarity=0.405 Sum_probs=92.2
Q ss_pred HhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHH
Q 000114 730 VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDR 809 (2158)
Q Consensus 730 ~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R 809 (2158)
...+.++||||+++..+..++..|...+.....+ ........|++|+..+|
T Consensus 158 ~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~-----------------------------~g~~~~~~~~~~~~~~~ 208 (286)
T d1wp9a2 158 RKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRF-----------------------------VGQASKENDRGLSQREQ 208 (286)
T ss_dssp HCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEE-----------------------------CCSSCC-------CCHH
T ss_pred hCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEe-----------------------------eccccccccchhchHHH
Confidence 3447799999999999999999998876554322 11122334889999999
Q ss_pred HHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCC
Q 000114 810 QLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2158)
Q Consensus 810 ~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2158)
..+++.|++|+++|||||+++++|+|+|++++||+ ||++. ++..|+||+||+||.+ .|.++++++..
T Consensus 209 ~~~~~~F~~g~~~vLv~T~~~~~Gld~~~~~~Vi~----~d~~~------~~~~~~Qr~GR~gR~~---~~~~~~l~~~~ 275 (286)
T d1wp9a2 209 KLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVF----YEPVP------SAIRSIQRRGRTGRHM---PGRVIILMAKG 275 (286)
T ss_dssp HHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEE----SSCCH------HHHHHHHHHTTSCSCC---CSEEEEEEETT
T ss_pred HHHHHHHHcCCCcEEEEccceeccccCCCCCEEEE----eCCCC------CHHHHHHHHHhCCCCC---CCEEEEEEeCC
Confidence 99999999999999999999999999999999999 66554 6778999999999964 57788887765
Q ss_pred c
Q 000114 890 E 890 (2158)
Q Consensus 890 ~ 890 (2158)
.
T Consensus 276 ~ 276 (286)
T d1wp9a2 276 T 276 (286)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.43 E-value=2.1e-13 Score=153.68 Aligned_cols=136 Identities=21% Similarity=0.242 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.++++|.+++..++++ .+.++++|||+|||+++...+ ..+ ++ ++||++|+++|+.|+.+.++ .++. .
T Consensus 70 ~Lr~yQ~eav~~~~~~-~~~ll~~~tG~GKT~~a~~~~-~~~-----~~--~~Liv~p~~~L~~q~~~~~~-~~~~---~ 136 (206)
T d2fz4a1 70 SLRDYQEKALERWLVD-KRGCIVLPTGSGKTHVAMAAI-NEL-----ST--PTLIVVPTLALAEQWKERLG-IFGE---E 136 (206)
T ss_dssp CCCHHHHHHHHHHTTT-SEEEEEESSSTTHHHHHHHHH-HHS-----CS--CEEEEESSHHHHHHHHHHHG-GGCG---G
T ss_pred CcCHHHHHHHHHHHhC-CCcEEEeCCCCCceehHHhHH-HHh-----cC--ceeEEEcccchHHHHHHHHH-hhcc---c
Confidence 6999999999999874 468999999999999885443 322 33 79999999999999998887 4543 3
Q ss_pred EEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCC
Q 000114 1421 RVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVEN 1500 (2158)
Q Consensus 1421 ~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~ 1500 (2158)
.+....|+.. ...+|+|+|.+.+...... ..+++++||+||||++... .+..++ ... .
T Consensus 137 ~~~~~~~~~~------~~~~i~i~t~~~~~~~~~~-----~~~~~~lvIiDEaH~~~a~---~~~~i~-------~~~-~ 194 (206)
T d2fz4a1 137 YVGEFSGRIK------ELKPLTVSTYDSAYVNAEK-----LGNRFMLLIFDEVHHLPAE---SYVQIA-------QMS-I 194 (206)
T ss_dssp GEEEESSSCB------CCCSEEEEEHHHHHHTHHH-----HTTTCSEEEEECSSCCCTT---THHHHH-------HTC-C
T ss_pred chhhcccccc------cccccccceehhhhhhhHh-----hCCcCCEEEEECCeeCCcH---HHHHHH-------hcc-C
Confidence 4566666443 2447999998876544333 2457899999999998532 333222 222 2
Q ss_pred CceEEEeccCC
Q 000114 1501 KIRIVALSTSL 1511 (2158)
Q Consensus 1501 ~~riV~lSATl 1511 (2158)
....+|||||+
T Consensus 195 ~~~~lgLTATl 205 (206)
T d2fz4a1 195 APFRLGLTATF 205 (206)
T ss_dssp CSEEEEEEESC
T ss_pred CCcEEEEecCC
Confidence 44678999997
|
| >d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: RecQ helicase DNA-binding domain-like domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.42 E-value=5.6e-14 Score=133.19 Aligned_cols=82 Identities=22% Similarity=0.323 Sum_probs=74.4
Q ss_pred cccch--hhHHHHHHHHHHhcCcCCCHHHHHHHHHHhhhhhhhccCCCCccCCCCCcccHHHHHHHHHHHHHHHHHhCCC
Q 000114 1743 VESHL--HHFLHDNFNAEIVAGVIENKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSHRHLSDHLSELVENTISDLEASKC 1820 (2158)
Q Consensus 1743 iES~L--~~~l~d~l~aeI~~~~i~~~qd~id~l~~t~~yrRl~~nP~~Y~~~~~~~~~~~~~l~~lve~~l~~L~~~~~ 1820 (2158)
|+|+| ...|.+|+|+||++|++.+.+|+++|+++||||+|+..|| +++|++++++|.++||
T Consensus 2 i~S~L~~~~~L~~hllaeIasg~i~s~~e~~~~l~~Tf~~~q~~~~l-----------------~~~i~~~l~~L~~~~~ 64 (85)
T d2p6ra1 2 ITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISL-----------------SYELERVVRQLENWGM 64 (85)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCC-----------------HHHHHHHHHHHHHTTS
T ss_pred ceeCCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHhHHHHhhhhcH-----------------HHHHHHHHHHHHHCCC
Confidence 67888 4589999999999999999999999999999999987764 3689999999999999
Q ss_pred eeEcCCCcccccccchhhhhccc
Q 000114 1821 IIIEEDMDLSPSNHGMIASYYYI 1843 (2158)
Q Consensus 1821 I~~~~~~~~~~t~lG~i~s~y~I 1843 (2158)
|+.+ +++.||++|++||+|||
T Consensus 65 I~~~--~~l~aT~lGri~S~~YI 85 (85)
T d2p6ra1 65 VVEA--AHLAPTKLGSLVSRLYI 85 (85)
T ss_dssp EEES--SSEEECHHHHHHHHTTC
T ss_pred cccc--cccccCHHHHHHHHHhC
Confidence 9875 36999999999999997
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.41 E-value=8.8e-14 Score=146.13 Aligned_cols=131 Identities=21% Similarity=0.148 Sum_probs=87.7
Q ss_pred cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccCCcEEEEEeCCC
Q 000114 509 SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMYDVKVRELSGDQ 588 (2158)
Q Consensus 509 ~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~ 588 (2158)
++.+..++.||||||||.++...++ . .+.+++|++|+++|++|+.+.+.+.+... .+...++.
T Consensus 6 ~~~~~~ll~apTGsGKT~~~~~~~~----~----------~~~~vli~~P~~~l~~q~~~~~~~~~~~~---~~~~~~~~ 68 (136)
T d1a1va1 6 QSFQVAHLHAPTGSGKSTKVPAAYA----A----------QGYKVLVLNPSVAATLGFGAYMSKAHGVD---PNIRTGVR 68 (136)
T ss_dssp SSCEEEEEECCTTSCTTTHHHHHHH----T----------TTCCEEEEESCHHHHHHHHHHHHHHHSCC---CEEECSSC
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHHH----H----------cCCcEEEEcChHHHHHHHHHHHHHHhhcc---cccccccc
Confidence 3455689999999999987654432 1 13479999999999999999999876532 33333333
Q ss_pred ccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEcc
Q 000114 589 TLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSA 668 (2158)
Q Consensus 589 ~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSA 668 (2158)
.. .....++++|.+...... ...+.++++|||||+|++.......+ .+++...+ ..+..++++|||
T Consensus 69 ~~----~~~~~~~~~~~~~~~~~~-----~~~~~~~~~vIiDE~H~~~~~~~~~~----~~~l~~~~-~~~~~~~l~~TA 134 (136)
T d1a1va1 69 TI----TTGSPITYSTYGKFLADG-----GCSGGAYDIIICDECHSTDATSILGI----GTVLDQAE-TAGARLVVLATA 134 (136)
T ss_dssp EE----CCCCSEEEEEHHHHHHTT-----GGGGCCCSEEEEETTTCCSHHHHHHH----HHHHHHTT-TTTCSEEEEEES
T ss_pred cc----ccccceEEEeeeeecccc-----chhhhcCCEEEEecccccCHHHHHHH----HHHHHHHH-HCCCCcEEEEeC
Confidence 22 234678889988643222 24577899999999998743222222 33333333 356789999999
Q ss_pred cc
Q 000114 669 TL 670 (2158)
Q Consensus 669 Tl 670 (2158)
|.
T Consensus 135 TP 136 (136)
T d1a1va1 135 TP 136 (136)
T ss_dssp SC
T ss_pred CC
Confidence 93
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=1.4e-12 Score=142.57 Aligned_cols=114 Identities=22% Similarity=0.321 Sum_probs=99.1
Q ss_pred HhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHH
Q 000114 730 VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDR 809 (2158)
Q Consensus 730 ~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R 809 (2158)
...++|+.+.||..+....++..+.+... ...|++.||.|+.+++
T Consensus 28 l~rGgQvy~V~p~I~~~e~~~~~l~~~~p-----------------------------------~~~i~~lHGkm~~~ek 72 (211)
T d2eyqa5 28 ILRGGQVYYLYNDVENIQKAAERLAELVP-----------------------------------EARIAIGHGQMREREL 72 (211)
T ss_dssp HTTTCEEEEECCCSSCHHHHHHHHHHHCT-----------------------------------TSCEEECCSSCCHHHH
T ss_pred HHcCCeEEEEEcCccchhhHHHHHHHhCC-----------------------------------ceEEEEEEeccCHHHH
Confidence 34588999999999999888887766421 2458899999999999
Q ss_pred HHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCC
Q 000114 810 QLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2158)
Q Consensus 810 ~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2158)
+.++..|.+|+++|||||++.+.|||+|+.++||- ++++. +..+++.|..||+||.+ ..|.|++++.+.
T Consensus 73 e~im~~F~~g~~~ILv~TtvIEvGiDvpnA~~iiI----~~a~r-----fGLaQLhQLRGRVGR~~--~~s~c~l~~~~~ 141 (211)
T d2eyqa5 73 ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII----ERADH-----FGLAQLHQLRGRVGRSH--HQAYAWLLTPHP 141 (211)
T ss_dssp HHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE----TTTTS-----SCHHHHHHHHTTCCBTT--BCEEEEEEECCG
T ss_pred HHHHHHHHcCCcceEEEehhhhhccCCCCCcEEEE----ecchh-----ccccccccccceeeecC--ccceEEEEecCC
Confidence 99999999999999999999999999999999886 77664 58999999999999966 679999998763
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.38 E-value=1.5e-13 Score=144.34 Aligned_cols=131 Identities=18% Similarity=0.047 Sum_probs=88.1
Q ss_pred cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhh
Q 000114 1355 NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLK 1434 (2158)
Q Consensus 1355 ~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~ 1434 (2158)
++.+..+|.||||||||+++...+. . .+. +++|++|+++|+.|..+.+.+.+... .....++..
T Consensus 6 ~~~~~~ll~apTGsGKT~~~~~~~~----~--~~~--~vli~~P~~~l~~q~~~~~~~~~~~~----~~~~~~~~~---- 69 (136)
T d1a1va1 6 QSFQVAHLHAPTGSGKSTKVPAAYA----A--QGY--KVLVLNPSVAATLGFGAYMSKAHGVD----PNIRTGVRT---- 69 (136)
T ss_dssp SSCEEEEEECCTTSCTTTHHHHHHH----T--TTC--CEEEEESCHHHHHHHHHHHHHHHSCC----CEEECSSCE----
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHHH----H--cCC--cEEEEcChHHHHHHHHHHHHHHhhcc----ccccccccc----
Confidence 3456789999999999987644433 2 244 89999999999999999999777643 222333222
Q ss_pred cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCC
Q 000114 1435 LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSL 1511 (2158)
Q Consensus 1435 ~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl 1511 (2158)
......++++|.+..... ....+++++++|+||+|++....+. .+..+...... ..+.+++++|||+
T Consensus 70 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~vIiDE~H~~~~~~~~----~~~~~l~~~~~-~~~~~~l~~TATP 136 (136)
T d1a1va1 70 ITTGSPITYSTYGKFLAD-----GGCSGGAYDIIICDECHSTDATSIL----GIGTVLDQAET-AGARLVVLATATP 136 (136)
T ss_dssp ECCCCSEEEEEHHHHHHT-----TGGGGCCCSEEEEETTTCCSHHHHH----HHHHHHHHTTT-TTCSEEEEEESSC
T ss_pred cccccceEEEeeeeeccc-----cchhhhcCCEEEEecccccCHHHHH----HHHHHHHHHHH-CCCCcEEEEeCCC
Confidence 223457899998865432 2345788999999999987533211 22333333222 3577899999995
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.33 E-value=2.5e-13 Score=150.50 Aligned_cols=85 Identities=24% Similarity=0.482 Sum_probs=75.6
Q ss_pred CCeEEecCCCCHHHHHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCC
Q 000114 795 YGFAIHHAGMTRGDRQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRP 874 (2158)
Q Consensus 795 ~gv~~hHagl~~~~R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~ 874 (2158)
..+++.||.|++++|+.+++.|++|+++|||||+++++|||+|++++||. |+++. ++.+.+.|..||+||.
T Consensus 65 ~~v~~lHG~m~~~eke~~m~~F~~g~~~iLVaTtViE~GIDip~a~~iii----~~a~~-----fglsqlhQlrGRvGR~ 135 (206)
T d1gm5a4 65 FKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI----ENPER-----FGLAQLHQLRGRVGRG 135 (206)
T ss_dssp -CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB----CSCSS-----SCTTHHHHHHHTSCCS
T ss_pred CeEEEEeecccHHHHHHHHHHHHCCCEEEEEEehhhhccccccCCcEEEE----EccCC-----ccHHHHHhhhhheeec
Confidence 45788999999999999999999999999999999999999999999887 77664 3677899999999997
Q ss_pred CCCCccEEEEEcCCCc
Q 000114 875 QYDSYGEGIIITGHSE 890 (2158)
Q Consensus 875 g~d~~G~~iil~~~~~ 890 (2158)
| ..|.|++++++..
T Consensus 136 ~--~~~~~~l~~~~~~ 149 (206)
T d1gm5a4 136 G--QEAYCFLVVGDVG 149 (206)
T ss_dssp S--TTCEEECCCCSCC
T ss_pred c--ccceeEeeecccc
Confidence 7 6799999987644
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.32 E-value=7.1e-12 Score=136.90 Aligned_cols=122 Identities=14% Similarity=0.180 Sum_probs=101.0
Q ss_pred HHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCC
Q 000114 1563 TFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEG 1642 (2158)
Q Consensus 1563 ~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~ 1642 (2158)
.+..+...+..++++.+.||..+....++..+... .....|+++||.
T Consensus 20 i~~~I~~El~rGgQvy~V~p~I~~~e~~~~~l~~~---------------------------------~p~~~i~~lHGk 66 (211)
T d2eyqa5 20 VREAILREILRGGQVYYLYNDVENIQKAAERLAEL---------------------------------VPEARIAIGHGQ 66 (211)
T ss_dssp HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHH---------------------------------CTTSCEEECCSS
T ss_pred HHHHHHHHHHcCCeEEEEEcCccchhhHHHHHHHh---------------------------------CCceEEEEEEec
Confidence 45667777789999999999998887777555332 234569999999
Q ss_pred CCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEE
Q 000114 1643 LNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCV 1722 (2158)
Q Consensus 1643 l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~i 1722 (2158)
|+.++++.++..|.+|+++|||||.+++.|||+|+.++|| .++ ...+-++++.|..||+||.+ ..|.|+
T Consensus 67 m~~~eke~im~~F~~g~~~ILv~TtvIEvGiDvpnA~~ii----I~~-----a~rfGLaQLhQLRGRVGR~~--~~s~c~ 135 (211)
T d2eyqa5 67 MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII----IER-----ADHFGLAQLHQLRGRVGRSH--HQAYAW 135 (211)
T ss_dssp CCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEE----ETT-----TTSSCHHHHHHHHTTCCBTT--BCEEEE
T ss_pred cCHHHHHHHHHHHHcCCcceEEEehhhhhccCCCCCcEEE----Eec-----chhccccccccccceeeecC--ccceEE
Confidence 9999999999999999999999999999999999888776 122 12346999999999999975 789999
Q ss_pred EEecCC
Q 000114 1723 ILCHAP 1728 (2158)
Q Consensus 1723 il~~~~ 1728 (2158)
++++..
T Consensus 136 l~~~~~ 141 (211)
T d2eyqa5 136 LLTPHP 141 (211)
T ss_dssp EEECCG
T ss_pred EEecCC
Confidence 999764
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.31 E-value=4.8e-13 Score=148.12 Aligned_cols=132 Identities=15% Similarity=0.253 Sum_probs=93.9
Q ss_pred HHHHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHH-hcccEEEec
Q 000114 1562 PTFTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKAT-LRHGVGYLH 1640 (2158)
Q Consensus 1562 ~~~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~-l~~gv~~~H 1640 (2158)
..+..+...+..++++.+.||..+..+.+...- .....+.+ .+.. ....++++|
T Consensus 17 ~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~---------------------~~e~~~~l----~~~~~p~~~v~~lH 71 (206)
T d1gm5a4 17 EVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKS---------------------AVEMYEYL----SKEVFPEFKLGLMH 71 (206)
T ss_dssp HHHHHHHHHTTTSCCBCCBCCCC--------CH---------------------HHHHHHSG----GGSCC---CBCCCC
T ss_pred HHHHHHHHHHHcCCCEEEEEeeecccccccchh---------------------hHHHHHHH----HHhcCCCCeEEEEe
Confidence 456677777788999999999887654332100 00000000 0111 134588999
Q ss_pred CCCCHHHHHHHHHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcC-CCHHHHHHhhccCCCCCCCCce
Q 000114 1641 EGLNKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTD-YPVTDLLQMMGHASRPLLDNSG 1719 (2158)
Q Consensus 1641 ~~l~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~-~s~~~~lQr~GRaGR~g~d~~G 1719 (2158)
|.|++++|..+++.|++|+++|||||+++++|||+|++++|| ..+.| +.++.+.|..||+||.| ..|
T Consensus 72 G~m~~~eke~~m~~F~~g~~~iLVaTtViE~GIDip~a~~ii----------i~~a~~fglsqlhQlrGRvGR~~--~~~ 139 (206)
T d1gm5a4 72 GRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMV----------IENPERFGLAQLHQLRGRVGRGG--QEA 139 (206)
T ss_dssp SSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEE----------BCSCSSSCTTHHHHHHHTSCCSS--TTC
T ss_pred ecccHHHHHHHHHHHHCCCEEEEEEehhhhccccccCCcEEE----------EEccCCccHHHHHhhhhheeecc--ccc
Confidence 999999999999999999999999999999999999999777 23333 46889999999999986 899
Q ss_pred EEEEEecCChH
Q 000114 1720 KCVILCHAPRK 1730 (2158)
Q Consensus 1720 ~~iil~~~~~~ 1730 (2158)
.|++++.+...
T Consensus 140 ~~~l~~~~~~~ 150 (206)
T d1gm5a4 140 YCFLVVGDVGE 150 (206)
T ss_dssp EEECCCCSCCH
T ss_pred eeEeeeccccc
Confidence 99999876543
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.28 E-value=3.5e-12 Score=151.51 Aligned_cols=118 Identities=19% Similarity=0.207 Sum_probs=88.2
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
.++.++||||+++..|..++..|....... . . ..+......|++++..+|..+
T Consensus 159 ~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~----~-~----------------------~~g~~~~~~~~~~~~~~~~~~ 211 (286)
T d1wp9a2 159 KQNSKIIVFTNYRETAKKIVNELVKDGIKA----K-R----------------------FVGQASKENDRGLSQREQKLI 211 (286)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHTTCCE----E-E----------------------ECCSSCC-------CCHHHHH
T ss_pred CCCCcEEEEeCcHHhHHHHHHHHHHcCCce----E-E----------------------eeccccccccchhchHHHHHH
Confidence 457789999999999999998775421100 0 0 012223345778999999999
Q ss_pred HHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCCh
Q 000114 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAPR 1729 (2158)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~~ 1729 (2158)
++.|++|+++|||||+++++|+|+|++.+|| +++.|.++..|+||+||+||.+ .|.+++|+....
T Consensus 212 ~~~F~~g~~~vLv~T~~~~~Gld~~~~~~Vi----------~~d~~~~~~~~~Qr~GR~gR~~---~~~~~~l~~~~~ 276 (286)
T d1wp9a2 212 LDEFARGEFNVLVATSVGEEGLDVPEVDLVV----------FYEPVPSAIRSIQRRGRTGRHM---PGRVIILMAKGT 276 (286)
T ss_dssp HHHHHHTSCSEEEECGGGGGGGGSTTCCEEE----------ESSCCHHHHHHHHHHTTSCSCC---CSEEEEEEETTS
T ss_pred HHHHHcCCCcEEEEccceeccccCCCCCEEE----------EeCCCCCHHHHHHHHHhCCCCC---CCEEEEEEeCCC
Confidence 9999999999999999999999999999999 5667778999999999999964 677777776653
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.25 E-value=1.5e-13 Score=159.60 Aligned_cols=106 Identities=12% Similarity=0.172 Sum_probs=86.7
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHH
Q 000114 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2158)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v 812 (2158)
+.++||||+|++.|+.++..|... +||+|++.+|..+
T Consensus 25 ~~~~iif~~~~~~~~~l~~~l~~~-------------------------------------------~hg~~~~~~R~~~ 61 (248)
T d1gkub2 25 GTGGIIYARTGEEAEEIYESLKNK-------------------------------------------FRIGIVTATKKGD 61 (248)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS-------------------------------------------SCEEECTTSSSHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHh-------------------------------------------ccCCCCHHHHHHH
Confidence 568999999999999988776421 3999999999999
Q ss_pred HHHHhCCCceEEEec----hhhhhccCCCc-eEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcC
Q 000114 813 EDLFGDGHVQVLVST----ATLAWGVNLPA-HTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887 (2158)
Q Consensus 813 ~~~F~~g~i~VLVaT----~tla~GVdlP~-v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~ 887 (2158)
++.|++|+++||||| +++++|+|+|. +++||+ ||+|+ |.||+||+||.| ..|.+++++.
T Consensus 62 ~~~f~~g~~~vLVaT~a~~~v~~rGlDip~~v~~VI~----~d~P~----------~~~r~gR~~R~g--~~~~~~~~~~ 125 (248)
T d1gkub2 62 YEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVF----VGCPS----------FRVTIEDIDSLS--PQMVKLLAYL 125 (248)
T ss_dssp HHHHHHTSCSEEEEECC------CCSCCTTTCCEEEE----ESCCE----------EEEECSCGGGSC--HHHHHHHHTT
T ss_pred HHHHHhCCCeEEEEeccccchhhhccCccccccEEEE----eCCCc----------chhhhhhhhccC--cceEeeeecc
Confidence 999999999999999 78999999996 999999 77774 889999999987 6688877777
Q ss_pred CCcHHHHHHh
Q 000114 888 HSELRYYLSL 897 (2158)
Q Consensus 888 ~~~~~~y~~l 897 (2158)
..+......+
T Consensus 126 ~~~~~~~~~l 135 (248)
T d1gkub2 126 YRNVDEIERL 135 (248)
T ss_dssp TSCHHHHHTT
T ss_pred HhhHHHHHHH
Confidence 6666555443
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.24 E-value=1.2e-12 Score=149.01 Aligned_cols=106 Identities=17% Similarity=0.102 Sum_probs=85.7
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHH---
Q 000114 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDR--- 809 (2158)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R--- 809 (2158)
++++||||+||+.|+.++..|...++. +..+|++|+++.|
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~~Gi~-------------------------------------a~~~Hgglsq~~R~~~ 78 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVALGIN-------------------------------------AVAYYRGLDVSVIPTS 78 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCC-------------------------------------EEEECTTSCGGGSCSS
T ss_pred CCCEEEECCcHHHHHHHHHHHHHCCCC-------------------------------------EEEEeCCchHHHHHhc
Confidence 789999999999999999999876543 4567999999876
Q ss_pred -------HHHHHHHhCCCceEEEechhhhh---ccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCc
Q 000114 810 -------QLVEDLFGDGHVQVLVSTATLAW---GVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY 879 (2158)
Q Consensus 810 -------~~v~~~F~~g~i~VLVaT~tla~---GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~ 879 (2158)
..+++.|..|..+++|+|+++++ |+|++.+.+||+ |+.+. |+.+|+||+||+|| | +.
T Consensus 79 gd~~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~giDid~V~~VI~----~d~P~------SvesyIQRiGRTGR-G--r~ 145 (299)
T d1a1va2 79 GDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIET----TTLPQ------DAVSRTQRRGRTGR-G--KP 145 (299)
T ss_dssp SSEEEEECTTC---CCCCBSEEEECCEEEEEEEECCCSSSCEEEE----EEEEC------BHHHHHHHHTTBCS-S--SC
T ss_pred cchHHHHHHHHHHHhcCCCcEEEEEeehhccCCCCCCCcceEEEe----CCCCC------CHHHHHhhccccCC-C--CC
Confidence 45778899999999999999999 788999999999 55444 78899999999999 7 55
Q ss_pred cEEEEEcCC
Q 000114 880 GEGIIITGH 888 (2158)
Q Consensus 880 G~~iil~~~ 888 (2158)
|....+...
T Consensus 146 G~~~~l~~~ 154 (299)
T d1a1va2 146 GIYRFVAPG 154 (299)
T ss_dssp EEEEESCSC
T ss_pred ceEEEEecC
Confidence 766654433
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.21 E-value=2.2e-12 Score=144.63 Aligned_cols=107 Identities=19% Similarity=0.264 Sum_probs=86.0
Q ss_pred HHhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHH
Q 000114 729 AVAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGD 808 (2158)
Q Consensus 729 ~~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~ 808 (2158)
+...+.++||||++...+..+++.| ++..+||+++..+
T Consensus 89 ~~~~~~k~lvf~~~~~~~~~l~~~l------------------------------------------~~~~i~g~~~~~~ 126 (200)
T d2fwra1 89 ERHRKDKIIIFTRHNELVYRISKVF------------------------------------------LIPAITHRTSREE 126 (200)
T ss_dssp HHTSSSCBCCBCSCHHHHHHHHHHT------------------------------------------TCCBCCSSSCSHH
T ss_pred HhCCCCcEEEEeCcHHHHHHHHhhc------------------------------------------CcceeeCCCCHHH
Confidence 3445779999999998887776543 1234599999999
Q ss_pred HHHHHHHHhCCCceEEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCc-cEEEEEcC
Q 000114 809 RQLVEDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSY-GEGIIITG 887 (2158)
Q Consensus 809 R~~v~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~-G~~iil~~ 887 (2158)
|..+++.|++|+++|||||++++.|+|+|++++||. |+++. |+.+|+||+||++|.|.++. +..+-++.
T Consensus 127 R~~~l~~F~~~~~~vLv~~~~~~~Gidl~~~~~vi~----~~~~~------s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~ 196 (200)
T d2fwra1 127 REEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI----MSGSG------SAREYIQRLGRILRPSKGKKEAVLYELIS 196 (200)
T ss_dssp HHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEE----ECCSS------CCHHHHHHHHHSBCCCTTTCCEEEEEEEE
T ss_pred HHHHHHHhhcCCeeeeeecchhhcccCCCCCCEEEE----eCCCC------CHHHHHHHHHhcCCCCCCCcEEEEEEEec
Confidence 999999999999999999999999999999999998 55543 66689999999999986542 34443443
|
| >d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Sec63 N-terminal domain-like superfamily: Sec63 N-terminal domain-like family: Achaeal helicase C-terminal domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.19 E-value=2.3e-11 Score=132.48 Aligned_cols=179 Identities=16% Similarity=0.146 Sum_probs=140.0
Q ss_pred CcccHHHHHhhcCC-CCCHHHHHHHhhCCccCCCCcCChhHHHHHHHHhhc---CC-CCCCCCCC----ChhHHHHHHHH
Q 000114 1009 SHGTISTYNEHLKP-TMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDR---VP-IPVKESLE----EPSAKINVLLQ 1079 (2158)
Q Consensus 1009 ~~~t~~~~~~~l~~-~~~~~~~l~~~s~~~ef~~i~~r~~e~~~l~~l~~~---~~-~~~~~~~~----~~~~K~~~llq 1079 (2158)
+|.|+..|...++. ..+...+|+++|.+++|..+.+|..|......+... .. .+.....+ -...|+.++|+
T Consensus 1 dPlsa~~~~~~l~~~~~s~l~lLhli~~TPD~~~l~~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~KtAl~L~ 80 (198)
T d2p6ra2 1 DPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTDSWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLK 80 (198)
T ss_dssp CHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTTHHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHhcCCCCcchHHHHHHcCCCCccccCcchhHHHHHHHHHHHHhhcccCchhhhhHHHHHHHHHHHHHHH
Confidence 47788888887765 468899999999999999999999887655444432 11 11111122 14689999999
Q ss_pred HHHcCCCC----CCCccc-chHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHcccCCCCCCccccCCCCHHH
Q 000114 1080 AYISQLKL----EGLSLT-SDMVFITQSAGRLLRALFEIVLKRGWAQLAEKALNLSKMVTKRMWSVQTPLRQFNGIPNEI 1154 (2158)
Q Consensus 1080 ~~i~~~~~----~~~~l~-~d~~~i~~~a~ri~~a~~ei~~~~~~~~~~~~~~~l~~~v~~~~w~~~~~l~q~~~~~~~~ 1154 (2158)
.||++.++ +.|++. +|+..+.++|.|+++|+.++|...+|.. +-.|.++|.+|+-++..||.++||+|+.+
T Consensus 81 dwi~E~~~~~I~~~y~v~~Gdl~~~~~~a~wl~~~~~~~~~~~~~~~----l~~L~~Rl~~Gv~~ell~L~~i~gvgr~r 156 (198)
T d2p6ra2 81 DWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNTS----VSGLTERIKHGVKEELLELVRIRHIGRVR 156 (198)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCS----STTHHHHHHHTCCGGGHHHHTSTTCCHHH
T ss_pred HHHcCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHhcHHH----HHHHHHHHHccCCHHHHhHhcCCCCCHHH
Confidence 99999997 557777 8999999999999999999999999854 34588999999999999999999999999
Q ss_pred HHHHHhCCC-CchhhccCChHHhhhhhcCchhHHHHHHHH
Q 000114 1155 LMKLEKKDF-AWERYYDLSPQELGELIRFPKMGRTLHKFV 1193 (2158)
Q Consensus 1155 ~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 1193 (2158)
+++|++.|+ +.+++..... +....+ .+++|+++.+.+
T Consensus 157 Ar~L~~~Gi~t~~dl~~a~~-~~~~~~-~~g~g~ki~~~i 194 (198)
T d2p6ra2 157 ARKLYNAGIRNAEDIVRHRE-KVASLI-GRGIAERVVEGI 194 (198)
T ss_dssp HHHHHTTTCCSHHHHHHTHH-HHHHHH-CHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHccH-hhHHHH-hcchHHHHHHHh
Confidence 999999998 5666665543 333333 367888777655
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.17 E-value=6.3e-12 Score=143.10 Aligned_cols=107 Identities=14% Similarity=0.090 Sum_probs=86.2
Q ss_pred cCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHH----
Q 000114 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQ---- 1648 (2158)
Q Consensus 1573 ~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR---- 1648 (2158)
.++++||||+|++.|+.++..|.. .+..+..+|++|+.+.|
T Consensus 35 kggk~LVFcnSR~~aE~La~~L~~-----------------------------------~Gi~a~~~Hgglsq~~R~~~g 79 (299)
T d1a1va2 35 KGGRHLIFCHSKKKCDELAAKLVA-----------------------------------LGINAVAYYRGLDVSVIPTSG 79 (299)
T ss_dssp HSSEEEEECSSHHHHHHHHHHHHH-----------------------------------TTCCEEEECTTSCGGGSCSSS
T ss_pred cCCCEEEECCcHHHHHHHHHHHHH-----------------------------------CCCCEEEEeCCchHHHHHhcc
Confidence 467899999999999999976632 34568889999999887
Q ss_pred ------HHHHHHHHcCCceEEEecCcccc---ccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCce
Q 000114 1649 ------EVVSALFEAGKIKVCVMSSSMCW---GVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSG 1719 (2158)
Q Consensus 1649 ------~~v~~~F~~g~i~VLVaT~~la~---Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G 1719 (2158)
..+++.|.+|+.+++|+|+++++ |+|++.+.+|| ++..|.++.+|+||+||+|| | +.|
T Consensus 80 d~~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~giDid~V~~VI----------~~d~P~SvesyIQRiGRTGR-G--r~G 146 (299)
T d1a1va2 80 DVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIE----------TTTLPQDAVSRTQRRGRTGR-G--KPG 146 (299)
T ss_dssp SEEEEECTTC---CCCCBSEEEECCEEEEEEEECCCSSSCEEE----------EEEEECBHHHHHHHHTTBCS-S--SCE
T ss_pred chHHHHHHHHHHHhcCCCcEEEEEeehhccCCCCCCCcceEEE----------eCCCCCCHHHHHhhccccCC-C--CCc
Confidence 45778899999999999999998 67888888888 66788899999999999999 5 677
Q ss_pred EEEEEecC
Q 000114 1720 KCVILCHA 1727 (2158)
Q Consensus 1720 ~~iil~~~ 1727 (2158)
....+...
T Consensus 147 ~~~~l~~~ 154 (299)
T d1a1va2 147 IYRFVAPG 154 (299)
T ss_dssp EEEESCSC
T ss_pred eEEEEecC
Confidence 66554433
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.15 E-value=1.3e-11 Score=138.13 Aligned_cols=106 Identities=14% Similarity=0.174 Sum_probs=86.2
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
.++.++||||++...+..++..| ++..+||+++..+|..+
T Consensus 91 ~~~~k~lvf~~~~~~~~~l~~~l----------------------------------------~~~~i~g~~~~~~R~~~ 130 (200)
T d2fwra1 91 HRKDKIIIFTRHNELVYRISKVF----------------------------------------LIPAITHRTSREEREEI 130 (200)
T ss_dssp TSSSCBCCBCSCHHHHHHHHHHT----------------------------------------TCCBCCSSSCSHHHHTH
T ss_pred CCCCcEEEEeCcHHHHHHHHhhc----------------------------------------CcceeeCCCCHHHHHHH
Confidence 45678999999998887666322 35568999999999999
Q ss_pred HHHHHcCCceEEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCC-ceEEEEEecC
Q 000114 1652 SALFEAGKIKVCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDN-SGKCVILCHA 1727 (2158)
Q Consensus 1652 ~~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~-~G~~iil~~~ 1727 (2158)
++.|++|+++|||||++++.|+|+|.+.+|| + ...+.+..+|+||+||++|.|.++ .+.++-|+..
T Consensus 131 l~~F~~~~~~vLv~~~~~~~Gidl~~~~~vi----~------~~~~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~~ 197 (200)
T d2fwra1 131 LEGFRTGRFRAIVSSQVLDEGIDVPDANVGV----I------MSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 197 (200)
T ss_dssp HHHHHHSSCSBCBCSSCCCSSSCSCCBSEEE----E------ECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred HHHhhcCCeeeeeecchhhcccCCCCCCEEE----E------eCCCCCHHHHHHHHHhcCCCCCCCcEEEEEEEecC
Confidence 9999999999999999999999999888887 2 345568999999999999998544 3455545443
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.02 E-value=4e-12 Score=147.52 Aligned_cols=104 Identities=8% Similarity=0.035 Sum_probs=79.7
Q ss_pred CCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHHH
Q 000114 1574 EKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVSA 1653 (2158)
Q Consensus 1574 ~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~~ 1653 (2158)
+.++||||+|++.|+.++..|. . .+||+|+..+|..+++
T Consensus 25 ~~~~iif~~~~~~~~~l~~~l~--------------------------------------~---~~hg~~~~~~R~~~~~ 63 (248)
T d1gkub2 25 GTGGIIYARTGEEAEEIYESLK--------------------------------------N---KFRIGIVTATKKGDYE 63 (248)
T ss_dssp CSCEEEEESSHHHHHHHHHTTT--------------------------------------T---SSCEEECTTSSSHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHH--------------------------------------H---hccCCCCHHHHHHHHH
Confidence 5689999999999988884431 1 2799999999999999
Q ss_pred HHHcCCceEEEec----CccccccCCCc-cEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC
Q 000114 1654 LFEAGKIKVCVMS----SSMCWGVPLTA-HLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1654 ~F~~g~i~VLVaT----~~la~Gvdlp~-~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~ 1728 (2158)
.|++|+++||||| +++++|+|+|. +++|| |++.| .|.|++||+||.| ..|.+++++...
T Consensus 64 ~f~~g~~~vLVaT~a~~~v~~rGlDip~~v~~VI----------~~d~P----~~~~r~gR~~R~g--~~~~~~~~~~~~ 127 (248)
T d1gkub2 64 KFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAV----------FVGCP----SFRVTIEDIDSLS--PQMVKLLAYLYR 127 (248)
T ss_dssp HHHHTSCSEEEEECC------CCSCCTTTCCEEE----------EESCC----EEEEECSCGGGSC--HHHHHHHHTTTS
T ss_pred HHHhCCCeEEEEeccccchhhhccCccccccEEE----------EeCCC----cchhhhhhhhccC--cceEeeeeccHh
Confidence 9999999999999 67899999995 99999 44444 3789999999987 566666655554
Q ss_pred hHHHHH
Q 000114 1729 RKEYYK 1734 (2158)
Q Consensus 1729 ~~~~~~ 1734 (2158)
+.....
T Consensus 128 ~~~~~~ 133 (248)
T d1gkub2 128 NVDEIE 133 (248)
T ss_dssp CHHHHH
T ss_pred hHHHHH
Confidence 444433
|
| >d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Sec63 N-terminal domain-like superfamily: Sec63 N-terminal domain-like family: Achaeal helicase C-terminal domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.85 E-value=7.5e-09 Score=112.45 Aligned_cols=167 Identities=16% Similarity=0.145 Sum_probs=131.9
Q ss_pred ChhhHHHHHhhcCC-CCCHHHHHHHHhcCccccCCCCCcchHHHHHHHhhcCccccC-CCCCCC------hHHHHHHHHH
Q 000114 1844 SYTTIERFSSSLTP-KTRMKGLLEVLASASEYAQLPIRPGEEEVVRRLIHHQRFSFE-NPKFTD------PHVKANALLQ 1915 (2158)
Q Consensus 1844 ~~~T~~~f~~~l~~-~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~p~~~~-~~~~~~------~~~K~~lLLq 1915 (2158)
+|.|+..|...+.. ..+.-++|+++|.+++|..+.+|..|......+......... ...+.. ..+|+.++|+
T Consensus 1 dPlsa~~~~~~l~~~~~s~l~lLhli~~TPD~~~l~~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~KtAl~L~ 80 (198)
T d2p6ra2 1 DPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTDSWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLK 80 (198)
T ss_dssp CHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTTHHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHhcCCCCcchHHHHHHcCCCCccccCcchhHHHHHHHHHHHHhhcccCchhhhhHHHHHHHHHHHHHHH
Confidence 47788888887765 345778999999999999999999987666555433221111 112221 2589999999
Q ss_pred HHhcCCCCCC------CchhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccCCCCCccccCCCCCHHH
Q 000114 1916 AHFSRQQVGG------NLKLDQEEVLLSASRLLQAMVDVISSNGWLSLALLAMEVSQMVTQGMWERDSMLLQLPHFMKDL 1989 (2158)
Q Consensus 1916 AhlsR~~lp~------~l~~D~~~Il~~~~rLl~a~vdi~~~~g~l~~~l~~m~L~q~i~Q~~w~~~s~L~QLP~~~~~~ 1989 (2158)
+|++..++.. --..|++.++++|.|++.++..+|...+|.. +-+|.++|..|+.++--+|++|||+++..
T Consensus 81 dwi~E~~~~~I~~~y~v~~Gdl~~~~~~a~wl~~~~~~~~~~~~~~~----l~~L~~Rl~~Gv~~ell~L~~i~gvgr~r 156 (198)
T d2p6ra2 81 DWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNTS----VSGLTERIKHGVKEELLELVRIRHIGRVR 156 (198)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCS----STTHHHHHHHTCCGGGHHHHTSTTCCHHH
T ss_pred HHHcCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHhcHHH----HHHHHHHHHccCCHHHHhHhcCCCCCHHH
Confidence 9999877531 2368999999999999999999999988743 23688999999999999999999999999
Q ss_pred HHHHHhCCCCCccCHHHHhcCCHHHHHH
Q 000114 1990 AKRCQENPGKSIETVFDLVEMEDDERRE 2017 (2158)
Q Consensus 1990 ~~~l~~~~~~~i~tv~dl~~~~~~~r~~ 2017 (2158)
+++|.+.| |+|+.||..++++.+..
T Consensus 157 Ar~L~~~G---i~t~~dl~~a~~~~~~~ 181 (198)
T d2p6ra2 157 ARKLYNAG---IRNAEDIVRHREKVASL 181 (198)
T ss_dssp HHHHHTTT---CCSHHHHHHTHHHHHHH
T ss_pred HHHHHHcC---CCCHHHHHHccHhhHHH
Confidence 99999999 99999999976544433
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=98.85 E-value=2.1e-09 Score=125.40 Aligned_cols=101 Identities=15% Similarity=0.176 Sum_probs=78.6
Q ss_pred CCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHHH
Q 000114 733 KHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQLV 812 (2158)
Q Consensus 733 ~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~v 812 (2158)
.++++|||++.+++..+|..|...+. .|..+||.+...++.
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~~g~-------------------------------------~V~~l~~~~~~~e~~-- 76 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRKAGK-------------------------------------SVVVLNRKTFEREYP-- 76 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTC-------------------------------------CEEECCSSSCC------
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcCC-------------------------------------eEEEEcCcCcHhHHh--
Confidence 67899999999999999999987542 356779999987765
Q ss_pred HHHHhCCCceEEEechhhhhccCCCceEEEEeccc-----ccCCCCC----ccccCCHHHHHHhhcccCCCC
Q 000114 813 EDLFGDGHVQVLVSTATLAWGVNLPAHTVIIKGTQ-----IYNPEKG----AWTELSPLDIMQMLGRAGRPQ 875 (2158)
Q Consensus 813 ~~~F~~g~i~VLVaT~tla~GVdlP~v~vVI~~~~-----~yd~~~g----~~~~~s~~~~~Qr~GRAGR~g 875 (2158)
.|++|+.+|||||+++++|+|++ +..||+... .||+.++ ...++|.++..||.|||||.+
T Consensus 77 --~~~~~~~~~~~~t~~~~~~~~~~-~~~vid~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~ 145 (299)
T d1yksa2 77 --TIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNP 145 (299)
T ss_dssp ------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCT
T ss_pred --hhhcCCcCEEEEechhhhceecC-ceEEEecCceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccC
Confidence 57899999999999999999995 888887643 4777654 346789999999999999964
|
| >d2q0zx2 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: Sec63 C-terminal domain-like domain: Protein pro2281 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=4.2e-09 Score=103.93 Aligned_cols=98 Identities=17% Similarity=0.304 Sum_probs=79.8
Q ss_pred ceEEEEEeec----cCceEEEEEEEecCCcccCCCCCCccc------EEEEEEeCCCCeEeeeehhhhhccccccccEEE
Q 000114 1199 LILAAHVQPI----TRTVLKVELTITPDFLWDDKVHGYVEP------FWVIVEDNDGEYILHHEYFMLKKQYIEEDHSLN 1268 (2158)
Q Consensus 1199 ~~~~~~~~p~----~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~v~d~~~~~i~~~~~~~l~~~~~~~~~~~~ 1268 (2158)
+++++.++.- .+..+.++|+++++-.-...+|++.+| |||+|+|.+++.|+..+++++++ ...+.++
T Consensus 2 i~~~~~v~d~~~v~~g~~~~l~V~l~R~~~~~~~v~aP~fP~~K~E~Wwivlgd~~~~~L~~~krv~~~~---~~~~~l~ 78 (114)
T d2q0zx2 2 IELSYEVVDKDSIRSGGPVVVLVQLEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQ---KAKVKLD 78 (114)
T ss_dssp EEEEEEETTGGGCBTTSEEEEEEEEEECSSCCSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEEEECCSS---EEEEEEE
T ss_pred ceEEEEEcCCcceecCCeEEEEEEEEEcCCcCCcEECCCCCCCCcccEEEEEEECCCCEEEEEeEecccc---ceEEEEE
Confidence 5667666522 266788888898876655679998766 99999999999999999998876 3467888
Q ss_pred EEEeccCCCCCeEEEEEecccccCCCccccccc
Q 000114 1269 FTVPIYEPLPPQYFIRVVSDKWLGSQTVLPVSF 1301 (2158)
Q Consensus 1269 f~vp~~~p~p~~y~v~~vSd~wlg~e~~~~i~~ 1301 (2158)
|.+| .++..+|.++++||+|+|++.+..+.|
T Consensus 79 f~~p--~~G~~~~~l~~~sDsY~G~D~~~~~~~ 109 (114)
T d2q0zx2 79 FVAP--ATGAHNYTLYFMSDAYMGCDQEYKFSV 109 (114)
T ss_dssp EECC--SSEEEEEEEEEEESSCSSCCEEEEEEE
T ss_pred EeCC--CCCeEEEEEEEEcccccccceEEEEEE
Confidence 8887 578889999999999999999888765
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=98.66 E-value=3.6e-08 Score=114.78 Aligned_cols=102 Identities=17% Similarity=0.148 Sum_probs=75.9
Q ss_pred cCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHHH
Q 000114 1573 NEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVVS 1652 (2158)
Q Consensus 1573 ~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v~ 1652 (2158)
..++++|||+|.+.+..+|..|.. .+..|..+||.+...++.
T Consensus 35 ~~g~~~~F~~s~~~~~~~a~~L~~-----------------------------------~g~~V~~l~~~~~~~e~~--- 76 (299)
T d1yksa2 35 DKRPTAWFLPSIRAANVMAASLRK-----------------------------------AGKSVVVLNRKTFEREYP--- 76 (299)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHH-----------------------------------TTCCEEECCSSSCC-------
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHh-----------------------------------cCCeEEEEcCcCcHhHHh---
Confidence 478899999999999999976632 245689999999988865
Q ss_pred HHHHcCCceEEEecCccccccCCCccEEEE-ecc----eeecCCCC----cCcCCCHHHHHHhhccCCCCC
Q 000114 1653 ALFEAGKIKVCVMSSSMCWGVPLTAHLVVV-MGT----QYYDGQEN----AHTDYPVTDLLQMMGHASRPL 1714 (2158)
Q Consensus 1653 ~~F~~g~i~VLVaT~~la~Gvdlp~~~vVI-~gt----~~yd~~~~----~~~~~s~~~~lQr~GRaGR~g 1714 (2158)
.|.+|+.+|||||+++++|+|++ +..|| .|. ..|++... ...+.|..+..||.|||||.+
T Consensus 77 -~~~~~~~~~~~~t~~~~~~~~~~-~~~vid~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~ 145 (299)
T d1yksa2 77 -TIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNP 145 (299)
T ss_dssp -----CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCT
T ss_pred -hhhcCCcCEEEEechhhhceecC-ceEEEecCceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccC
Confidence 46789999999999999999997 55555 333 35776533 245789999999999999964
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.46 E-value=6.8e-07 Score=105.60 Aligned_cols=157 Identities=20% Similarity=0.172 Sum_probs=98.5
Q ss_pred CCCHHHHHHHHHHHc--------CCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHH
Q 000114 495 QLNRVQSRVYKSALS--------SADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEV 566 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~--------~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~ 566 (2158)
.|+|+|.+++..++. .....|++-..|.|||+.++..+...+...... .....++|+|+|. +|+.|+
T Consensus 55 ~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~----~~~~~~~LIV~P~-sl~~qW 129 (298)
T d1z3ix2 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDC----KPEIDKVIVVSPS-SLVRNW 129 (298)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTS----SCSCSCEEEEECH-HHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhcccc----cCCCCcEEEEccc-hhhHHH
Confidence 689999999986532 234589999999999987765444444433211 1123469999997 588999
Q ss_pred HHHHHhhcccCCcEEEEEeCCCccCHhh-----------hccccEEEcchhHHHHHHhccCCCccccccceEEeeccccc
Q 000114 567 VGNLSNRLQMYDVKVRELSGDQTLTRQQ-----------IEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 567 ~~~~~~~~~~~gi~v~~l~Gd~~~~~~~-----------~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l 635 (2158)
.+++.+.+.. ...+..++|+....... ...++++++|.+.+...... ..-.+.++||+||+|.+
T Consensus 130 ~~Ei~k~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~~----l~~~~~~~vI~DEaH~i 204 (298)
T d1z3ix2 130 YNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV----LHKGKVGLVICDEGHRL 204 (298)
T ss_dssp HHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT----TTTSCCCEEEETTGGGC
T ss_pred HHHHHhhcCC-ceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccchhc----ccccceeeeeccccccc
Confidence 9999987654 34455566654322111 12457999998864322111 12234689999999999
Q ss_pred ccCChhhHHHHHHHHHHHHhhccccccEEEEcccc
Q 000114 636 HDNRGPVLESIVARTVRQIETTKEHIRLVGLSATL 670 (2158)
Q Consensus 636 ~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATl 670 (2158)
..........+ .. . ...+.++||||+
T Consensus 205 kn~~s~~~~a~-~~-------l-~~~~rllLTGTP 230 (298)
T d1z3ix2 205 KNSDNQTYLAL-NS-------M-NAQRRVLISGTP 230 (298)
T ss_dssp CTTCHHHHHHH-HH-------H-CCSEEEEECSSC
T ss_pred ccccchhhhhh-hc-------c-ccceeeeecchH
Confidence 75443333222 11 1 234568999995
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.44 E-value=5.8e-07 Score=101.99 Aligned_cols=159 Identities=18% Similarity=0.174 Sum_probs=99.2
Q ss_pred CCCHHHHHHHHHHH---cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 495 QLNRVQSRVYKSAL---SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l---~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
+|.|+|.+++..++ .....+|++-++|.|||..++..+........ ..++++|+| ..++.++.+++.
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~~~~~---------~~~~LIv~p-~~l~~~W~~e~~ 81 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENE---------LTPSLVICP-LSVLKNWEEELS 81 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTC---------CSSEEEEEC-STTHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhhhhhhhccc---------ccccceecc-hhhhhHHHHHHH
Confidence 68999999997543 23345899999999999998655544443321 226888998 677889999988
Q ss_pred hhcccCCcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHH
Q 000114 572 NRLQMYDVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTV 651 (2158)
Q Consensus 572 ~~~~~~gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~ 651 (2158)
+.... ..+....+.. ......+.+|+++|.+.+....+ ..--...+||+||+|.+..........+
T Consensus 82 ~~~~~--~~~~~~~~~~--~~~~~~~~~vvi~~~~~~~~~~~-----l~~~~~~~vI~DEah~~k~~~s~~~~~~----- 147 (230)
T d1z63a1 82 KFAPH--LRFAVFHEDR--SKIKLEDYDIILTTYAVLLRDTR-----LKEVEWKYIVIDEAQNIKNPQTKIFKAV----- 147 (230)
T ss_dssp HHCTT--SCEEECSSST--TSCCGGGSSEEEEEHHHHTTCHH-----HHTCCEEEEEEETGGGGSCTTSHHHHHH-----
T ss_pred hhccc--ccceeecccc--chhhccCcCEEEeeHHHHHhHHH-----HhcccceEEEEEhhhcccccchhhhhhh-----
Confidence 76543 3343333222 22234578999999986421111 1112357899999999865433332221
Q ss_pred HHHhhccccccEEEEccccC--ChHHHHHHHh
Q 000114 652 RQIETTKEHIRLVGLSATLP--NYEDVALFLR 681 (2158)
Q Consensus 652 ~~~~~~~~~~riv~lSATlp--n~~dv~~~l~ 681 (2158)
.... ....++||||+- +..|+...+.
T Consensus 148 ---~~l~-a~~r~~LTgTPi~n~~~dl~~ll~ 175 (230)
T d1z63a1 148 ---KELK-SKYRIALTGTPIENKVDDLWSIMT 175 (230)
T ss_dssp ---HTSC-EEEEEEECSSCSTTCHHHHHHHHH
T ss_pred ---hhhc-cceEEEEecchHHhHHHHHHHHHH
Confidence 1122 234689999954 3555544443
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.44 E-value=7.6e-07 Score=105.19 Aligned_cols=156 Identities=19% Similarity=0.252 Sum_probs=97.1
Q ss_pred CCCCHHHHHHHHHHhc--------CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCC---ceEEEEEcccHHHHHHHHH
Q 000114 1340 KHFNPIQTQVFTVLYN--------TDDNVLVAAPTGSGKTICSEFAILRNHQKASETG---VMRAVYIAPLEALAKERYR 1408 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~--------~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~---~~~~v~IaP~raLa~q~~~ 1408 (2158)
..+.|+|.+++.-+++ .+...|++=..|.|||+.+.- ++..+....... ..++|||+|. +|+.|+.+
T Consensus 54 ~~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia-~l~~l~~~~~~~~~~~~~~LIV~P~-sl~~qW~~ 131 (298)
T d1z3ix2 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCIT-LIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYN 131 (298)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHH-HHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHH-HHHHHHHhcccccCCCCcEEEEccc-hhhHHHHH
Confidence 3789999999986542 344689999999999987643 333333322111 1268999997 58889999
Q ss_pred HHHHHhcCCCCcEEEEEcCCcchhhh-----------cccCCcEEEeCHHHHHHHHhhhhccccccceeEEEeccccccc
Q 000114 1409 DWEIKFGQGLGMRVVELTGETAMDLK-----------LLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1409 ~~~~~f~~~~g~~v~~ltG~~~~~~~-----------~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~ 1477 (2158)
++.+.+.. ...+..++|+...... .....+++|+|.+.+...... ..-.+++++|+||+|.+.
T Consensus 132 Ei~k~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~~----l~~~~~~~vI~DEaH~ik 205 (298)
T d1z3ix2 132 EVGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV----LHKGKVGLVICDEGHRLK 205 (298)
T ss_dssp HHHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT----TTTSCCCEEEETTGGGCC
T ss_pred HHHhhcCC--ceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccchhc----ccccceeeeecccccccc
Confidence 88855543 3455566665443211 122347999998875432221 122357899999999996
Q ss_pred CCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCC
Q 000114 1478 GQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2158)
Q Consensus 1478 ~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~ 1512 (2158)
...+..... +..+ . ..+.++||||+-
T Consensus 206 n~~s~~~~a----~~~l----~-~~~rllLTGTPi 231 (298)
T d1z3ix2 206 NSDNQTYLA----LNSM----N-AQRRVLISGTPI 231 (298)
T ss_dssp TTCHHHHHH----HHHH----C-CSEEEEECSSCS
T ss_pred cccchhhhh----hhcc----c-cceeeeecchHH
Confidence 544222221 1111 2 346688999974
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.43 E-value=5.2e-07 Score=102.37 Aligned_cols=156 Identities=20% Similarity=0.246 Sum_probs=97.5
Q ss_pred CCCHHHHHHHHHHh---cCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCC
Q 000114 1341 HFNPIQTQVFTVLY---NTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQG 1417 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~---~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~ 1417 (2158)
++.|+|.+++.-++ .....+|++-++|.|||+.+. +++..+....... ++++|+| ..++.|+.+++. ++..
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i-~~~~~~~~~~~~~--~~LIv~p-~~l~~~W~~e~~-~~~~- 85 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTI-AVFSDAKKENELT--PSLVICP-LSVLKNWEEELS-KFAP- 85 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHH-HHHHHHHHTTCCS--SEEEEEC-STTHHHHHHHHH-HHCT-
T ss_pred chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHH-Hhhhhhhhccccc--ccceecc-hhhhhHHHHHHH-hhcc-
Confidence 68999999997543 344559999999999999984 4444444423334 7899998 677788888877 4433
Q ss_pred CCcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhh
Q 000114 1418 LGMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQ 1497 (2158)
Q Consensus 1418 ~g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~ 1497 (2158)
...+....+. .........+|+++|.+.+..... ..--...++|+||+|.+..........+ ..
T Consensus 86 -~~~~~~~~~~--~~~~~~~~~~vvi~~~~~~~~~~~-----l~~~~~~~vI~DEah~~k~~~s~~~~~~--------~~ 149 (230)
T d1z63a1 86 -HLRFAVFHED--RSKIKLEDYDIILTTYAVLLRDTR-----LKEVEWKYIVIDEAQNIKNPQTKIFKAV--------KE 149 (230)
T ss_dssp -TSCEEECSSS--TTSCCGGGSSEEEEEHHHHTTCHH-----HHTCCEEEEEEETGGGGSCTTSHHHHHH--------HT
T ss_pred -cccceeeccc--cchhhccCcCEEEeeHHHHHhHHH-----HhcccceEEEEEhhhcccccchhhhhhh--------hh
Confidence 2344433322 122233466999999887532211 1123578999999999975443222211 11
Q ss_pred cCCCceEEEeccCCCC--hHHHHH
Q 000114 1498 VENKIRIVALSTSLAN--AKDLGE 1519 (2158)
Q Consensus 1498 ~~~~~riV~lSATl~n--~~dl~~ 1519 (2158)
+. ....++||||+-+ ..|+..
T Consensus 150 l~-a~~r~~LTgTPi~n~~~dl~~ 172 (230)
T d1z63a1 150 LK-SKYRIALTGTPIENKVDDLWS 172 (230)
T ss_dssp SC-EEEEEEECSSCSTTCHHHHHH
T ss_pred hc-cceEEEEecchHHhHHHHHHH
Confidence 22 3456889999754 455443
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.34 E-value=1.1e-06 Score=105.09 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=90.4
Q ss_pred hCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHH
Q 000114 731 AGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQ 810 (2158)
Q Consensus 731 ~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~ 810 (2158)
..+.++|||++.+.....+...|...++ .+..+||+++..+|.
T Consensus 116 ~~g~KvlIFs~~~~~ld~l~~~l~~~g~-------------------------------------~~~~l~G~~~~~~R~ 158 (346)
T d1z3ix1 116 TTSDKVVLVSNYTQTLDLFEKLCRNRRY-------------------------------------LYVRLDGTMSIKKRA 158 (346)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHHHHTC-------------------------------------CEEEECSSCCHHHHH
T ss_pred hcCCceeEEeehhhhhHHHHHHHhhhhc-------------------------------------cccccccchhHHHHH
Confidence 3467999999999988877777766543 244569999999999
Q ss_pred HHHHHHhCCCce---EEEechhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcC
Q 000114 811 LVEDLFGDGHVQ---VLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITG 887 (2158)
Q Consensus 811 ~v~~~F~~g~i~---VLVaT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~ 887 (2158)
.+.+.|.++... +|++|.+.+.|+|+++.+.||.++..| ++....|++||+-|.|..+.-.++.+..
T Consensus 159 ~~i~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~w----------np~~~~Qa~~R~~R~GQ~~~V~v~rli~ 228 (346)
T d1z3ix1 159 KIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDW----------NPANDEQAMARVWRDGQKKTCYIYRLLS 228 (346)
T ss_dssp HHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCS----------SHHHHHHHHTTSSSTTCCSCEEEEEEEE
T ss_pred HHHHhhhcccccceeeeecchhhhhccccccceEEEEecCCC----------ccchHhHhhhcccccCCCCceEEEEEEe
Confidence 999999987543 678999999999999999999955444 5667999999999999766656666666
Q ss_pred CCc
Q 000114 888 HSE 890 (2158)
Q Consensus 888 ~~~ 890 (2158)
...
T Consensus 229 ~~T 231 (346)
T d1z3ix1 229 TGT 231 (346)
T ss_dssp TTS
T ss_pred CCC
Confidence 554
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.30 E-value=9.3e-07 Score=101.18 Aligned_cols=116 Identities=14% Similarity=0.106 Sum_probs=75.2
Q ss_pred HhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHH
Q 000114 1569 QHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQ 1648 (2158)
Q Consensus 1569 ~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR 1648 (2158)
....++.++||||..+.....+...+ ....+..+..+||+++..+|
T Consensus 80 ~~~~~g~kviIFs~~~~~~~~l~~~l----------------------------------~~~~~~~~~~i~G~~~~~~R 125 (244)
T d1z5za1 80 EALDEGDKIAIFTQFVDMGKIIRNII----------------------------------EKELNTEVPFLYGELSKKER 125 (244)
T ss_dssp HHHHTTCCEEEEESCHHHHHHHHHHH----------------------------------HHHHCSCCCEECTTSCHHHH
T ss_pred hhcccccceEEEeeceehHHHHHHHH----------------------------------HhhccceEEEEecccchhcc
Confidence 33467889999999998776554322 22345567889999999999
Q ss_pred HHHHHHHHcC-CceEEEe-cCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEec
Q 000114 1649 EVVSALFEAG-KIKVCVM-SSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCH 1726 (2158)
Q Consensus 1649 ~~v~~~F~~g-~i~VLVa-T~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~ 1726 (2158)
..+.+.|.++ ...||++ |.+.+.|+|++....|| .+..+.++..+.|++||+.|.|..+...++.++.
T Consensus 126 ~~~i~~F~~~~~~~vll~~~~~~g~Glnl~~a~~vi----------~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~ 195 (244)
T d1z5za1 126 DDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI----------HFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLIS 195 (244)
T ss_dssp HHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEE----------ECSCCSCTTTC--------------CCEEEEEEE
T ss_pred chhhhhhhccccchhccccccccccccccchhhhhh----------hcCchhhhHHHhhhcceeeecCCCCceEEEEEee
Confidence 9999999876 4677755 57889999999777676 2345567888899999999998766667766655
Q ss_pred CC
Q 000114 1727 AP 1728 (2158)
Q Consensus 1727 ~~ 1728 (2158)
..
T Consensus 196 ~~ 197 (244)
T d1z5za1 196 VG 197 (244)
T ss_dssp TT
T ss_pred CC
Confidence 54
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.30 E-value=9e-07 Score=101.27 Aligned_cols=113 Identities=15% Similarity=0.127 Sum_probs=75.7
Q ss_pred CCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHHHH
Q 000114 732 GKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDRQL 811 (2158)
Q Consensus 732 ~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R~~ 811 (2158)
.+.++||||+.+.....+...+.... +..+...||+++..+|..
T Consensus 84 ~g~kviIFs~~~~~~~~l~~~l~~~~------------------------------------~~~~~~i~G~~~~~~R~~ 127 (244)
T d1z5za1 84 EGDKIAIFTQFVDMGKIIRNIIEKEL------------------------------------NTEVPFLYGELSKKERDD 127 (244)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHH------------------------------------CSCCCEECTTSCHHHHHH
T ss_pred cccceEEEeeceehHHHHHHHHHhhc------------------------------------cceEEEEecccchhccch
Confidence 47799999999998877666654431 123456699999999999
Q ss_pred HHHHHhCC-CceEEE-echhhhhccCCCceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccEEEEEcCCC
Q 000114 812 VEDLFGDG-HVQVLV-STATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHS 889 (2158)
Q Consensus 812 v~~~F~~g-~i~VLV-aT~tla~GVdlP~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~~iil~~~~ 889 (2158)
+.+.|.++ ..+||+ +|.+.+.|+|+++.+.||.++.+|+|. .+.|+.||+-|.|....-.++.+...+
T Consensus 128 ~i~~F~~~~~~~vll~~~~~~g~Glnl~~a~~vi~~~~~wn~~----------~~~Qa~~R~~R~Gq~~~v~i~~l~~~~ 197 (244)
T d1z5za1 128 IISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPA----------VEDQATDRVYRIGQTRNVIVHKLISVG 197 (244)
T ss_dssp HHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTT----------TC--------------CCEEEEEEETT
T ss_pred hhhhhhccccchhccccccccccccccchhhhhhhcCchhhhH----------HHhhhcceeeecCCCCceEEEEEeeCC
Confidence 99999765 466665 557899999999999999977777766 489999999999876666666666555
Q ss_pred c
Q 000114 890 E 890 (2158)
Q Consensus 890 ~ 890 (2158)
.
T Consensus 198 T 198 (244)
T d1z5za1 198 T 198 (244)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.10 E-value=9.1e-06 Score=96.93 Aligned_cols=112 Identities=12% Similarity=-0.007 Sum_probs=88.7
Q ss_pred hcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCCCHHHHHHH
Q 000114 1572 KNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGLNKTDQEVV 1651 (2158)
Q Consensus 1572 ~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l~~~dR~~v 1651 (2158)
.++.++|||+..+.....+...| ...+..+..+||+++..+|..+
T Consensus 116 ~~g~KvlIFs~~~~~ld~l~~~l-----------------------------------~~~g~~~~~l~G~~~~~~R~~~ 160 (346)
T d1z3ix1 116 TTSDKVVLVSNYTQTLDLFEKLC-----------------------------------RNRRYLYVRLDGTMSIKKRAKI 160 (346)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHH-----------------------------------HHHTCCEEEECSSCCHHHHHHH
T ss_pred hcCCceeEEeehhhhhHHHHHHH-----------------------------------hhhhccccccccchhHHHHHHH
Confidence 46779999999988765554333 1134567889999999999999
Q ss_pred HHHHHcCCce---EEEecCccccccCCCccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCCCCceEEEEEecCC
Q 000114 1652 SALFEAGKIK---VCVMSSSMCWGVPLTAHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLLDNSGKCVILCHAP 1728 (2158)
Q Consensus 1652 ~~~F~~g~i~---VLVaT~~la~Gvdlp~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~d~~G~~iil~~~~ 1728 (2158)
.+.|.++... +|++|.+.+.|+|++....|| .++.+.++....|++||+-|.|..+.-.++.+....
T Consensus 161 i~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi----------~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~ 230 (346)
T d1z3ix1 161 VERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLV----------MFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 230 (346)
T ss_dssp HHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEE----------ECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred HHhhhcccccceeeeecchhhhhccccccceEEE----------EecCCCccchHhHhhhcccccCCCCceEEEEEEeCC
Confidence 9999987543 778889999999999888887 345667899999999999999977666666666554
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=97.91 E-value=2.1e-05 Score=82.38 Aligned_cols=115 Identities=17% Similarity=0.110 Sum_probs=76.1
Q ss_pred HHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCC
Q 000114 1564 FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGL 1643 (2158)
Q Consensus 1564 ~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l 1643 (2158)
...+......+.|+||++.|.+.++.++..|... +.....+++..
T Consensus 24 i~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~-----------------------------------gi~h~vLnAk~ 68 (175)
T d1tf5a4 24 AEDVAQRYMTGQPVLVGTVAVETSELISKLLKNK-----------------------------------GIPHQVLNAKN 68 (175)
T ss_dssp HHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTT-----------------------------------TCCCEEECSSC
T ss_pred HHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHc-----------------------------------CCCceeehhhh
Confidence 3344444477999999999999999998776321 11234566665
Q ss_pred CHHHHHHHHHHHHcCCceEEEecCccccccCCC--------ccEEEEecceeecCCCCcCcCCCHHHHHHhhccCCCCCC
Q 000114 1644 NKTDQEVVSALFEAGKIKVCVMSSSMCWGVPLT--------AHLVVVMGTQYYDGQENAHTDYPVTDLLQMMGHASRPLL 1715 (2158)
Q Consensus 1644 ~~~dR~~v~~~F~~g~i~VLVaT~~la~Gvdlp--------~~~vVI~gt~~yd~~~~~~~~~s~~~~lQr~GRaGR~g~ 1715 (2158)
...+-..+-+.-. .-.|.|||+.++||.|+. .-.+|| +| ..+-+..--.|..|||||.|
T Consensus 69 ~~~Ea~II~~Ag~--~g~VtIATNmAGRGtDikl~~~v~~~GGLhVI-~t---------~~~~s~Rid~Ql~GR~gRQG- 135 (175)
T d1tf5a4 69 HEREAQIIEEAGQ--KGAVTIATNMAGRGTDIKLGEGVKELGGLAVV-GT---------ERHESRRIDNQLRGRSGRQG- 135 (175)
T ss_dssp HHHHHHHHTTTTS--TTCEEEEETTSSTTCCCCCCTTSGGGTSEEEE-ES---------SCCSSHHHHHHHHTTSSGGG-
T ss_pred HHHHHHHHHhccC--CCceeehhhHHHcCCCccchHHHHhCCCcEEE-Ee---------ccCcchhHHHHHhcchhhhC-
Confidence 5444443333222 336999999999999975 344555 23 23446777899999999988
Q ss_pred CCceEEEEEecC
Q 000114 1716 DNSGKCVILCHA 1727 (2158)
Q Consensus 1716 d~~G~~iil~~~ 1727 (2158)
..|.+.++++-
T Consensus 136 -dpGs~~~~~sl 146 (175)
T d1tf5a4 136 -DPGITQFYLSM 146 (175)
T ss_dssp -CCEEEEEEEET
T ss_pred -CCcccEEEEEc
Confidence 56666555533
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=97.91 E-value=1.5e-05 Score=83.64 Aligned_cols=109 Identities=16% Similarity=0.185 Sum_probs=73.9
Q ss_pred HhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHH
Q 000114 730 VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDR 809 (2158)
Q Consensus 730 ~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R 809 (2158)
+..+.|+||++.|...++.++..|...+..... +++.....+-
T Consensus 31 ~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~v-------------------------------------LnAk~~~~Ea 73 (175)
T d1tf5a4 31 YMTGQPVLVGTVAVETSELISKLLKNKGIPHQV-------------------------------------LNAKNHEREA 73 (175)
T ss_dssp HHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEE-------------------------------------ECSSCHHHHH
T ss_pred HhcCCCEEEEeCcHHHHHHHHHHHHHcCCCcee-------------------------------------ehhhhHHHHH
Confidence 344889999999999999999999887654332 3555433333
Q ss_pred HHHHHHHhCCCceEEEechhhhhccCCC--------ceEEEEecccccCCCCCccccCCHHHHHHhhcccCCCCCCCccE
Q 000114 810 QLVEDLFGDGHVQVLVSTATLAWGVNLP--------AHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGE 881 (2158)
Q Consensus 810 ~~v~~~F~~g~i~VLVaT~tla~GVdlP--------~v~vVI~~~~~yd~~~g~~~~~s~~~~~Qr~GRAGR~g~d~~G~ 881 (2158)
..+-+ +-..-.|.|||+.+.||.|+. +=-+||. | +-++ |..--.|..|||||.| ..|.
T Consensus 74 ~II~~--Ag~~g~VtIATNmAGRGtDikl~~~v~~~GGLhVI~-t--~~~~-------s~Rid~Ql~GR~gRQG--dpGs 139 (175)
T d1tf5a4 74 QIIEE--AGQKGAVTIATNMAGRGTDIKLGEGVKELGGLAVVG-T--ERHE-------SRRIDNQLRGRSGRQG--DPGI 139 (175)
T ss_dssp HHHTT--TTSTTCEEEEETTSSTTCCCCCCTTSGGGTSEEEEE-S--SCCS-------SHHHHHHHHTTSSGGG--CCEE
T ss_pred HHHHh--ccCCCceeehhhHHHcCCCccchHHHHhCCCcEEEE-e--ccCc-------chhHHHHHhcchhhhC--CCcc
Confidence 33322 222337999999999999875 1223443 2 2222 5667899999999977 5677
Q ss_pred EEEEcCCC
Q 000114 882 GIIITGHS 889 (2158)
Q Consensus 882 ~iil~~~~ 889 (2158)
+..+++-+
T Consensus 140 ~~~~~sle 147 (175)
T d1tf5a4 140 TQFYLSME 147 (175)
T ss_dssp EEEEEETT
T ss_pred cEEEEEcC
Confidence 77776543
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=97.67 E-value=6e-05 Score=83.74 Aligned_cols=127 Identities=13% Similarity=0.108 Sum_probs=97.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.+.++|...--.+..| -|....||=|||+++.+|+.-....+ ..|-+|+..--||..=++.+...+
T Consensus 80 RhyDVQLiGgi~L~~G---~iaem~TGEGKTL~a~l~a~l~al~g-----------~~vhvvTvNdyLA~RDae~m~~iy 145 (273)
T d1tf5a3 80 FPFKVQLMGGVALHDG---NIAEMKTGEGKTLTSTLPVYLNALTG-----------KGVHVVTVNEYLASRDAEQMGKIF 145 (273)
T ss_dssp CCCHHHHHHHHHHHTT---SEEECCTTSCHHHHHHHHHHHHHTTS-----------SCEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEehhHHHHHHHHHhh---hheeecCCCcchhHHHHHHHHHHhcC-----------CCceEEecCccccchhhhHHhHHH
Confidence 5677887766554444 48899999999999999887665543 247778888889999899999999
Q ss_pred ccCCcEEEEEeCCCccCHh-hhccccEEEcchhHH--HHHHhccC---CCccccccceEEeeccccc
Q 000114 575 QMYDVKVRELSGDQTLTRQ-QIEETQIIVTTPEKW--DIITRKSG---DRTYTQLVKLLIIDEIHLL 635 (2158)
Q Consensus 575 ~~~gi~v~~l~Gd~~~~~~-~~~~~~IiV~TPekl--d~l~r~~~---~~~~l~~v~lIIiDEaH~l 635 (2158)
..+|++|+..+.+.+...+ ..-.+||+.+|...+ |.|.-+.. +....+.+.+.||||+|.+
T Consensus 146 ~~lGlsvg~~~~~~~~~~r~~~Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsi 212 (273)
T d1tf5a3 146 EFLGLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSI 212 (273)
T ss_dssp HHTTCCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHH
T ss_pred HHcCCCccccccccCHHHHHHHhhCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhh
Confidence 9999999999887665443 345899999999986 77665442 2234566889999999965
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=97.35 E-value=0.00035 Score=77.55 Aligned_cols=128 Identities=19% Similarity=0.093 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGM 1420 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~ 1420 (2158)
.+.++|...--.+.+ + -|....||=|||+++-+|+.-.... ++ .+-+|...--||..=++.+.. +-+.+|+
T Consensus 80 RhyDVQLiGgi~L~~-G--~iaem~TGEGKTL~a~l~a~l~al~---g~--~vhvvTvNdyLA~RDae~m~~-iy~~lGl 150 (273)
T d1tf5a3 80 FPFKVQLMGGVALHD-G--NIAEMKTGEGKTLTSTLPVYLNALT---GK--GVHVVTVNEYLASRDAEQMGK-IFEFLGL 150 (273)
T ss_dssp CCCHHHHHHHHHHHT-T--SEEECCTTSCHHHHHHHHHHHHHTT---SS--CEEEEESSHHHHHHHHHHHHH-HHHHTTC
T ss_pred EEehhHHHHHHHHHh-h--hheeecCCCcchhHHHHHHHHHHhc---CC--CceEEecCccccchhhhHHhH-HHHHcCC
Confidence 455666555544544 3 3889999999999998888754444 33 466778888888776766664 4445799
Q ss_pred EEEEEcCCcchh-hhcccCCcEEEeCHHHH-HHHHhh-hh---ccccccceeEEEeccccccc
Q 000114 1421 RVVELTGETAMD-LKLLEKGQIIISTPEKW-DALSRR-WK---QRKYVQQVSLFIIDELHLIG 1477 (2158)
Q Consensus 1421 ~v~~ltG~~~~~-~~~l~~~~IIV~TPe~l-~~l~r~-~~---~~~~l~~v~llIiDEaH~l~ 1477 (2158)
+|+..+.+.... .+..-.+||+.+|...+ .+.+|. .. .....+.+.+.||||+|.++
T Consensus 151 svg~~~~~~~~~~r~~~Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~~~aIvDEvDsil 213 (273)
T d1tf5a3 151 TVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSIL 213 (273)
T ss_dssp CEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHH
T ss_pred CccccccccCHHHHHHHhhCCceecchhhhhhhhcchhhhcChhhhccCCCCEEEEEcchhhh
Confidence 999998876654 34455779999999887 234443 11 12245668999999999654
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=96.96 E-value=0.00081 Score=80.04 Aligned_cols=71 Identities=15% Similarity=0.082 Sum_probs=50.7
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHH
Q 000114 1340 KHFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEI 1412 (2158)
Q Consensus 1340 ~~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~ 1412 (2158)
...+..|.+|+..++. +.-++|.||.|||||.... .++..+.+.....+.++++.+||-.-+....+....
T Consensus 147 ~~~~~~Q~~A~~~al~-~~~~vI~G~pGTGKTt~i~-~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~~~ 217 (359)
T d1w36d1 147 SDEINWQKVAAAVALT-RRISVISGGPGTGKTTTVA-KLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 217 (359)
T ss_dssp TTSCCHHHHHHHHHHT-BSEEEEECCTTSTHHHHHH-HHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred cccccHHHHHHHHHHc-CCeEEEEcCCCCCceehHH-HHHHHHHHHHhccCCeEEEecCcHHHHHHHHHHHHH
Confidence 3567899999999886 5569999999999997752 233333322222334899999999888877766553
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=96.89 E-value=0.0005 Score=80.35 Aligned_cols=71 Identities=21% Similarity=0.161 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
+|||-|.+|+.. ...+++|.||.|||||.+.+.-+...+..... ..-+|+|+++++++|.++..++.+..
T Consensus 1 ~L~~eQ~~av~~---~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~-------~~~~ILvlt~tn~a~~~i~~~~~~~~ 70 (306)
T d1uaaa1 1 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-------QARHIAAVTFTNKAAREMKERVGQTL 70 (306)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCC-------CGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CcCHHHHHHHhC---CCCCEEEEeeCCccHHHHHHHHHHHHHHhcCC-------ChhHEEEEeCcHHHHHHHHHHHHHhc
Confidence 589999999964 34579999999999999887766666654321 22379999999999999999888765
Q ss_pred c
Q 000114 575 Q 575 (2158)
Q Consensus 575 ~ 575 (2158)
.
T Consensus 71 ~ 71 (306)
T d1uaaa1 71 G 71 (306)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=96.68 E-value=0.003 Score=74.94 Aligned_cols=82 Identities=20% Similarity=0.211 Sum_probs=56.1
Q ss_pred hhhHhhcCCCCCCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHH
Q 000114 484 EWAQPAFKGMTQLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALV 563 (2158)
Q Consensus 484 ~~~~~~f~g~~~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa 563 (2158)
.++...|+ -..+++.|.+|+..++.+ .-++|+||.|+|||.+... ++..+..... ..+.++++++||-.-+
T Consensus 138 ~~~~~~~~-~~~~~~~Q~~A~~~al~~-~~~vI~G~pGTGKTt~i~~-~l~~l~~~~~------~~~~~I~l~ApTgkAA 208 (359)
T d1w36d1 138 QTLDKLFP-VSDEINWQKVAAAVALTR-RISVISGGPGTGKTTTVAK-LLAALIQMAD------GERCRIRLAAPTGKAA 208 (359)
T ss_dssp HHHHTTCC-CTTSCCHHHHHHHHHHTB-SEEEEECCTTSTHHHHHHH-HHHHHHHTCS------SCCCCEEEEBSSHHHH
T ss_pred HHHHHhcc-CcccccHHHHHHHHHHcC-CeEEEEcCCCCCceehHHH-HHHHHHHHHh------ccCCeEEEecCcHHHH
Confidence 34444443 235688999999999875 5689999999999987533 2233322111 1345899999999988
Q ss_pred HHHHHHHHhhc
Q 000114 564 AEVVGNLSNRL 574 (2158)
Q Consensus 564 ~q~~~~~~~~~ 574 (2158)
..+.+......
T Consensus 209 ~~L~e~~~~~~ 219 (359)
T d1w36d1 209 ARLTESLGKAL 219 (359)
T ss_dssp HHHHHHHTHHH
T ss_pred HHHHHHHHHHH
Confidence 88877765543
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.48 E-value=0.0078 Score=63.63 Aligned_cols=74 Identities=14% Similarity=0.195 Sum_probs=49.4
Q ss_pred HHHHHHhHhcCCCEEEEecChHHHHHHHHHHHhhcccCCcccccccCCCcccchhhHhhhhHHHHHHHhcccEEEecCCC
Q 000114 1564 FTAIVQHAKNEKPALVFVPSRKYVRLTAVDLMTYSSMDGDQKSAFLLWPAEEVEPFIDNIQEEMLKATLRHGVGYLHEGL 1643 (2158)
Q Consensus 1564 ~~~i~~~~~~~~~~IVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~l~~~~~~l~~~~~~i~d~~L~~~l~~gv~~~H~~l 1643 (2158)
...+......+.|+||.+.|.+.++.++..|... +....++++.-
T Consensus 24 v~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~-----------------------------------gi~h~vLNAK~ 68 (219)
T d1nkta4 24 VDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKR-----------------------------------RIPHNVLNAKY 68 (219)
T ss_dssp HHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHT-----------------------------------TCCCEEECSSC
T ss_pred HHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHh-----------------------------------ccchhccchhh
Confidence 3344444478999999999999999888766331 12234566654
Q ss_pred CHHHHHHHHHHHHcCC-ceEEEecCccccccCC
Q 000114 1644 NKTDQEVVSALFEAGK-IKVCVMSSSMCWGVPL 1675 (2158)
Q Consensus 1644 ~~~dR~~v~~~F~~g~-i~VLVaT~~la~Gvdl 1675 (2158)
...+-..|-+ .|. -.|-|||+.++||.|+
T Consensus 69 herEAeIIAq---AG~~GaVTIATNMAGRGTDI 98 (219)
T d1nkta4 69 HEQEATIIAV---AGRRGGVTVATNMAGRGTDI 98 (219)
T ss_dssp HHHHHHHHHT---TTSTTCEEEEETTCSTTCCC
T ss_pred HHHHHHHHHh---cccCCcEEeeccccCCCCce
Confidence 3333333332 343 4689999999999998
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=96.46 E-value=0.0017 Score=75.73 Aligned_cols=70 Identities=23% Similarity=0.192 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc-CCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~-~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
.+||-|.+|+.. ...+++|.||.|||||.+...-+...+.... +.. +++++++|++++.++..++.+.++
T Consensus 1 ~L~~eQ~~av~~---~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~--~ILvlt~tn~a~~~i~~~~~~~~~ 71 (306)
T d1uaaa1 1 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQAR--HIAAVTFTNKAAREMKERVGQTLG 71 (306)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGG--GEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHhC---CCCCEEEEeeCCccHHHHHHHHHHHHHHhcCCChh--HEEEEeCcHHHHHHHHHHHHHhcC
Confidence 479999999964 3567999999999999887655555544421 223 799999999999998888875443
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=96.23 E-value=0.0033 Score=73.60 Aligned_cols=71 Identities=21% Similarity=0.291 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhc
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~ 574 (2158)
.|++-|.+++.. ...+++|.||.|||||.+++--+.+.+..... ..-+++++++++.++.++..++...+
T Consensus 11 ~L~~eQ~~~v~~---~~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~~-------~p~~il~lt~t~~aa~~~~~~~~~~~ 80 (318)
T d1pjra1 11 HLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHV-------APWNILAITFTNKAAREMRERVQSLL 80 (318)
T ss_dssp TSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCC-------CGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhC---CCCCEEEEecCCccHHHHHHHHHHHHHHcCCC-------CHHHeEeEeccHHHHHHHHHHHHhhc
Confidence 589999999974 33469999999999999987777666654321 22379999999999999999988764
Q ss_pred c
Q 000114 575 Q 575 (2158)
Q Consensus 575 ~ 575 (2158)
.
T Consensus 81 ~ 81 (318)
T d1pjra1 81 G 81 (318)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=96.01 E-value=0.0052 Score=71.90 Aligned_cols=70 Identities=23% Similarity=0.206 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhc-CCCceEEEEEcccHHHHHHHHHHHHHHhc
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKAS-ETGVMRAVYIAPLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~-~~~~~~~v~IaP~raLa~q~~~~~~~~f~ 1415 (2158)
.+++-|.+++.. ...+++|.|+.|||||.+..--+.+.+.... +.. +++++++++..+.++..++.....
T Consensus 11 ~L~~eQ~~~v~~---~~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~--~il~lt~t~~aa~~~~~~~~~~~~ 81 (318)
T d1pjra1 11 HLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPW--NILAITFTNKAAREMRERVQSLLG 81 (318)
T ss_dssp TSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGG--GEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hCCHHHHHHHhC---CCCCEEEEecCCccHHHHHHHHHHHHHHcCCCCHH--HeEeEeccHHHHHHHHHHHHhhcc
Confidence 699999999974 3456999999999999988766666555421 222 799999999999999988875543
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.96 E-value=0.019 Score=60.57 Aligned_cols=67 Identities=19% Similarity=0.240 Sum_probs=47.1
Q ss_pred HhCCCeEEEEecChHHHHHHHHHHHHHhhcccccccccccCchhHHHHHhhhhccCcchhhhhccCCeEEecCCCCHHHH
Q 000114 730 VAGKHQVLIFVHSRKETAKTARAIRDTALENDTLGRFLKEDSVSREILQSHTDMVKSNDLKDLLPYGFAIHHAGMTRGDR 809 (2158)
Q Consensus 730 ~~~~~~vLVFv~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ll~~gv~~hHagl~~~~R 809 (2158)
+..+.||||.+.|....+.++..|...++....+ +|.-...+-
T Consensus 31 h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vL-------------------------------------NAK~herEA 73 (219)
T d1nkta4 31 YAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVL-------------------------------------NAKYHEQEA 73 (219)
T ss_dssp HHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEE-------------------------------------CSSCHHHHH
T ss_pred HhcCCCEEEeeCcHHHHHHHHHHHHHhccchhcc-------------------------------------chhhHHHHH
Confidence 4458899999999999999999999887665433 333211111
Q ss_pred HHHHHHHhCCC-ceEEEechhhhhccCC
Q 000114 810 QLVEDLFGDGH-VQVLVSTATLAWGVNL 836 (2158)
Q Consensus 810 ~~v~~~F~~g~-i~VLVaT~tla~GVdl 836 (2158)
..|- ..|. -.|-|||+++.||.|+
T Consensus 74 eIIA---qAG~~GaVTIATNMAGRGTDI 98 (219)
T d1nkta4 74 TIIA---VAGRRGGVTVATNMAGRGTDI 98 (219)
T ss_dssp HHHH---TTTSTTCEEEEETTCSTTCCC
T ss_pred HHHH---hcccCCcEEeeccccCCCCce
Confidence 2221 2333 3688999999999998
|
| >d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.58 E-value=0.0062 Score=51.97 Aligned_cols=56 Identities=13% Similarity=0.078 Sum_probs=50.8
Q ss_pred cccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHccCC
Q 000114 1979 LLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRFP 2037 (2158)
Q Consensus 1979 L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~~P 2037 (2158)
|.+||||++.++++|.++| +.|+.+|...++++..++-++++...++|.+.++..-
T Consensus 1 L~~IpGIG~~~a~~L~~~G---~~tv~~l~~a~~eeL~~i~Gi~~~~A~~i~~~ar~~~ 56 (60)
T d2i1qa1 1 LTDLPGVGPSTAEKLVEAG---YIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLC 56 (60)
T ss_dssp CTTSTTCCHHHHHHHHHHT---CCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHcc---CCCHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHHc
Confidence 5789999999999999999 9999999999999998888899999999988877543
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.20 E-value=0.029 Score=60.66 Aligned_cols=121 Identities=21% Similarity=0.219 Sum_probs=65.5
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc--cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccC
Q 000114 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP--MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (2158)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP--~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~ 591 (2158)
+++++|||+|||.+..--+.+...++ .++.+++. .|.-+.++.+.+.+.++ +.+....
T Consensus 13 i~lvGp~GvGKTTTiaKLA~~~~~~g-----------~kV~lit~Dt~R~gA~eQL~~~a~~l~---v~~~~~~------ 72 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLALYYKGKG-----------RRPLLVAADTQRPAAREQLRLLGEKVG---VPVLEVM------ 72 (207)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHHHTT-----------CCEEEEECCSSCHHHHHHHHHHHHHHT---CCEEECC------
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-----------CcEEEEecccccchHHHHHHHHHHhcC---Ccccccc------
Confidence 46799999999876554443333221 24555543 68888888888887653 3333222
Q ss_pred HhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhccccccEEEEccccC
Q 000114 592 RQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLP 671 (2158)
Q Consensus 592 ~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~~~~~riv~lSATlp 671 (2158)
+|+....+.+........++.++|+||=+=+.+.+ +..+..+....+..++.-.++.++||.+
T Consensus 73 ------------~~~~~~~~~~~~~~~~~~~~~d~vlIDTaGr~~~d-----~~~~~el~~~~~~~~~~~~llv~~a~~~ 135 (207)
T d1ls1a2 73 ------------DGESPESIRRRVEEKARLEARDLILVDTAGRLQID-----EPLMGELARLKEVLGPDEVLLVLDAMTG 135 (207)
T ss_dssp ------------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCC-----HHHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred ------------ccchhhHHHHHHHHHHhhccCcceeecccccchhh-----hhhHHHHHHHHhhcCCceEEEEeccccc
Confidence 22211111111100122445688999888654322 2223333333334455666788888876
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.17 E-value=0.037 Score=60.09 Aligned_cols=37 Identities=11% Similarity=0.123 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHH---cCC---CcEEEEccCCCchHHHHHHHH
Q 000114 496 LNRVQSRVYKSAL---SSA---DNILLCAPTGAGKTNVAVLTI 532 (2158)
Q Consensus 496 l~~iQ~~~i~~~l---~~~---~nvlv~APTGsGKT~~a~l~i 532 (2158)
++|+|..++..+. ..+ ..+|++||.|+|||..+...+
T Consensus 3 ~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a 45 (207)
T d1a5ta2 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALS 45 (207)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHH
Confidence 4578877776543 222 238999999999998775544
|
| >d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.98 E-value=0.02 Score=48.97 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=51.0
Q ss_pred ccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHccC
Q 000114 1978 MLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNRF 2036 (2158)
Q Consensus 1978 ~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~~ 2036 (2158)
.|..+|||++.++++|.+++ +.|+.+|..+++++..++-++++...++|.+.+...
T Consensus 2 ~L~~i~GIG~~~a~~L~~~g---~~sv~~l~~a~~~eL~~i~Gi~~~~A~~i~~~ar~~ 57 (61)
T d1pzna1 2 SIEDLPGVGPATAEKLREAG---YDTLEAIAVASPIELKEVAGISEGTALKIIQAARKA 57 (61)
T ss_dssp CSSCCTTCCHHHHHHHHTTT---CCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHhc---CCCHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 47889999999999999998 999999999999999999999999999998887654
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.55 E-value=0.092 Score=56.80 Aligned_cols=41 Identities=20% Similarity=0.167 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHhc---CC---CcEEEEccCCchhHHHHHHHHHHHHH
Q 000114 1342 FNPIQTQVFTVLYN---TD---DNVLVAAPTGSGKTICSEFAILRNHQ 1383 (2158)
Q Consensus 1342 ~~~iQ~q~~~~l~~---~~---~nvli~ApTGSGKTl~a~l~il~~l~ 1383 (2158)
+.|+|..++..+.. .+ ..+|+.||.|+|||.++... .+.+.
T Consensus 3 ~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~-a~~l~ 49 (207)
T d1a5ta2 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYAL-SRYLL 49 (207)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHH-HHHHT
T ss_pred CCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHH-HHhcc
Confidence 56888888877632 22 23899999999999988443 34443
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=94.21 E-value=0.096 Score=56.41 Aligned_cols=121 Identities=16% Similarity=0.157 Sum_probs=62.2
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc-c-cHHHHHHHHHHHHhhcccCCcEEEEEeCCCccC
Q 000114 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA-P-MKALVAEVVGNLSNRLQMYDVKVRELSGDQTLT 591 (2158)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~ia-P-~kaLa~q~~~~~~~~~~~~gi~v~~l~Gd~~~~ 591 (2158)
+++++|||+|||....--+.+ +.+. +.++.+++ - .|+=+.++.+.+.+++ |+.+....
T Consensus 12 i~lvGptGvGKTTTiAKLA~~-~~~~----------g~kV~lit~Dt~R~gA~eQL~~~a~~l---~v~~~~~~------ 71 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLARQ-FEQQ----------GKSVMLAAGDTFRAAAVEQLQVWGQRN---NIPVIAQH------ 71 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHHH-HHTT----------TCCEEEECCCTTCHHHHHHHHHHHHHT---TCCEECCS------
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHHC----------CCcEEEEecccccccchhhhhhhhhhc---CCcccccc------
Confidence 567999999999776544333 3221 12344443 3 3777888888887764 44443222
Q ss_pred HhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhc------cccccEEE
Q 000114 592 RQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT------KEHIRLVG 665 (2158)
Q Consensus 592 ~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~------~~~~riv~ 665 (2158)
+|+.+..+.+...+....++.++|+||=+=+. +.-+..+..+....+.. .+.-.++.
T Consensus 72 ------------~~~d~~~~l~~~~~~a~~~~~d~ilIDTaGr~-----~~d~~~~~el~~l~~~~~~~~~~~p~~~~LV 134 (211)
T d2qy9a2 72 ------------TGADSASVIFDAIQAAKARNIDVLIADTAGRL-----QNKSHLMEELKKIVRVMKKLDVEAPHEVMLT 134 (211)
T ss_dssp ------------TTCCHHHHHHHHHHHHHHTTCSEEEECCCCCG-----GGHHHHHHHHHHHHHHHTTTCTTCCSEEEEE
T ss_pred ------------cCCCHHHHHHHHHHHHHHcCCCEEEeccCCCc-----cccHHHHHHHHHHHHHHhhhcccCcceeeee
Confidence 22222112211111112345688999987443 33333333333222221 13456778
Q ss_pred EccccC
Q 000114 666 LSATLP 671 (2158)
Q Consensus 666 lSATlp 671 (2158)
++||..
T Consensus 135 l~a~~~ 140 (211)
T d2qy9a2 135 IDASTG 140 (211)
T ss_dssp EEGGGT
T ss_pred hhcccC
Confidence 899975
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.93 E-value=0.13 Score=55.56 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=32.7
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc-ccHHHHHHHHHHHHhhc
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA-PMKALVAEVVGNLSNRL 574 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~ia-P~kaLa~q~~~~~~~~~ 574 (2158)
-+++++|||+|||....--+.+...++. + -+++-+ ..|+=+.++.+.+.+.+
T Consensus 13 vi~lvGptGvGKTTTiAKLAa~~~~~~~---------k-V~lit~Dt~R~gA~eQL~~~a~~l 65 (213)
T d1vmaa2 13 VIMVVGVNGTGKTTSCGKLAKMFVDEGK---------S-VVLAAADTFRAAAIEQLKIWGERV 65 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTC---------C-EEEEEECTTCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCC---------c-eEEEeecccccchhHHHHHHhhhc
Confidence 3678999999999776544434333221 1 233333 46777888888887754
|
| >d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.81 E-value=0.023 Score=48.32 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=44.5
Q ss_pred ccccCCCCHHHHHHHHhCCC-CchhhccCChHHhhhhhcC-chhHHHHHHHHhcC
Q 000114 1144 LRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRF-PKMGRTLHKFVHQF 1196 (2158)
Q Consensus 1144 l~q~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~ 1196 (2158)
|.++||||+.++++|.++|| +++++...++++|.++-+. ++.+++|++.++..
T Consensus 1 L~~IpGIG~~~a~~L~~~G~~tv~~l~~a~~eeL~~i~Gi~~~~A~~i~~~ar~~ 55 (60)
T d2i1qa1 1 LTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDL 55 (60)
T ss_dssp CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHccCCCHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 56899999999999999988 8999999999999998664 46667787777654
|
| >d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Hef domain-like domain: DNA repair endonuclease XPF species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.71 E-value=0.042 Score=47.05 Aligned_cols=55 Identities=16% Similarity=0.358 Sum_probs=48.7
Q ss_pred ccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHcc-CC
Q 000114 1978 MLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR-FP 2037 (2158)
Q Consensus 1978 ~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~-~P 2037 (2158)
.|.+||||+...+++|.++ +.|+.+|.+++.++..++++ ++...+.|.+|+++ ||
T Consensus 4 ~L~~iPGIg~~~~~~Ll~~----f~Si~~l~~As~~eL~~v~G-~~~~A~~i~~f~~~~~~ 59 (62)
T d2a1ja1 4 FLLKMPGVNAKNCRSLMHH----VKNIAELAALSQDELTSILG-NAANAKQLYDFIHTSFA 59 (62)
T ss_dssp HHHTSTTCCHHHHHHHHHH----CSSHHHHHTCCHHHHHHHHS-CHHHHHHHHHHHHCCCC
T ss_pred HHhcCCCCCHHHHHHHHHH----hccHHHHHhCCHHHHHHCcC-cHHHHHHHHHHHhhhhc
Confidence 4789999999999998764 78999999999999999999 88888899999986 44
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.40 E-value=0.13 Score=55.29 Aligned_cols=122 Identities=18% Similarity=0.256 Sum_probs=68.2
Q ss_pred EEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEc--ccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhccc
Q 000114 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA--PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE 1437 (2158)
Q Consensus 1360 vli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~Ia--P~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~ 1437 (2158)
+++++|||+|||....--+.+ +.. .+. ++.+++ ..|.-+.++.+.|.+.++ +.+.....
T Consensus 13 i~lvGp~GvGKTTTiaKLA~~-~~~--~g~--kV~lit~Dt~R~gA~eQL~~~a~~l~----v~~~~~~~---------- 73 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLALY-YKG--KGR--RPLLVAADTQRPAAREQLRLLGEKVG----VPVLEVMD---------- 73 (207)
T ss_dssp EEEECCTTTTHHHHHHHHHHH-HHH--TTC--CEEEEECCSSCHHHHHHHHHHHHHHT----CCEEECCT----------
T ss_pred EEEECCCCCCHHHHHHHHHHH-HHH--CCC--cEEEEecccccchHHHHHHHHHHhcC----Cccccccc----------
Confidence 456899999999765433332 333 233 444443 478888888888887664 33332221
Q ss_pred CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCCC
Q 000114 1438 KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLAN 1513 (2158)
Q Consensus 1438 ~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~n 1513 (2158)
|+......+........++.++++||=+-+. +.-+..+..+..+....++...++.++|+...
T Consensus 74 --------~~~~~~~~~~~~~~~~~~~~d~vlIDTaGr~-----~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~ 136 (207)
T d1ls1a2 74 --------GESPESIRRRVEEKARLEARDLILVDTAGRL-----QIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ 136 (207)
T ss_dssp --------TCCHHHHHHHHHHHHHHHTCCEEEEECCCCS-----SCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTH
T ss_pred --------cchhhHHHHHHHHHHhhccCcceeecccccc-----hhhhhhHHHHHHHHhhcCCceEEEEeccccch
Confidence 2211111111111112456678888866543 22334556666666555666777888888754
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.35 E-value=0.12 Score=55.58 Aligned_cols=123 Identities=13% Similarity=0.155 Sum_probs=66.0
Q ss_pred EEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcc-cHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcccC
Q 000114 1360 VLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAP-LEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEK 1438 (2158)
Q Consensus 1360 vli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP-~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~ 1438 (2158)
+++++|||+|||....=-+. ++.. .+.. .+++-+- .|.=+.++.+.|.+.+ |+.+....
T Consensus 12 i~lvGptGvGKTTTiAKLA~-~~~~--~g~k-V~lit~Dt~R~gA~eQL~~~a~~l----~v~~~~~~------------ 71 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLAR-QFEQ--QGKS-VMLAAGDTFRAAAVEQLQVWGQRN----NIPVIAQH------------ 71 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHH-HHHT--TTCC-EEEECCCTTCHHHHHHHHHHHHHT----TCCEECCS------------
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHH--CCCc-EEEEecccccccchhhhhhhhhhc----CCcccccc------------
Confidence 56799999999987643332 2333 2231 3334333 4777888888887654 34443221
Q ss_pred CcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcC------CCceEEEeccCCC
Q 000114 1439 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVE------NKIRIVALSTSLA 1512 (2158)
Q Consensus 1439 ~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~------~~~riV~lSATl~ 1512 (2158)
+|+.+...+++.......++.++++||=+=+. +.-+..+..++.+.+..+ +.-.++.++|+..
T Consensus 72 ------~~~d~~~~l~~~~~~a~~~~~d~ilIDTaGr~-----~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~ 140 (211)
T d2qy9a2 72 ------TGADSASVIFDAIQAAKARNIDVLIADTAGRL-----QNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG 140 (211)
T ss_dssp ------TTCCHHHHHHHHHHHHHHTTCSEEEECCCCCG-----GGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGT
T ss_pred ------cCCCHHHHHHHHHHHHHHcCCCEEEeccCCCc-----cccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccC
Confidence 22222223322212222356788888876533 233335555555543322 3456778888875
Q ss_pred C
Q 000114 1513 N 1513 (2158)
Q Consensus 1513 n 1513 (2158)
.
T Consensus 141 ~ 141 (211)
T d2qy9a2 141 Q 141 (211)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.28 E-value=0.19 Score=54.19 Aligned_cols=125 Identities=15% Similarity=0.194 Sum_probs=66.6
Q ss_pred cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhcccC
Q 000114 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLEK 1438 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~~ 1438 (2158)
.+++++|||+|||....--+.+ +.. .+..+-.|-+=..|.=+.++.+.|.+.+ |+.+.... ...+
T Consensus 13 vi~lvGptGvGKTTTiAKLAa~-~~~--~~~kV~lit~Dt~R~gA~eQL~~~a~~l----~i~~~~~~--~~~d------ 77 (213)
T d1vmaa2 13 VIMVVGVNGTGKTTSCGKLAKM-FVD--EGKSVVLAAADTFRAAAIEQLKIWGERV----GATVISHS--EGAD------ 77 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH-HHH--TTCCEEEEEECTTCHHHHHHHHHHHHHH----TCEEECCS--TTCC------
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHH--CCCceEEEeecccccchhHHHHHHhhhc----CccccccC--CCCc------
Confidence 4678999999999875433333 333 1332222333457888888888887665 34443211 1111
Q ss_pred CcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcC------CCceEEEeccCCC
Q 000114 1439 GQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVE------NKIRIVALSTSLA 1512 (2158)
Q Consensus 1439 ~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~------~~~riV~lSATl~ 1512 (2158)
+....+.+......++.++|+||=+=+. +.=+..+..+..+..... +.-.++.++||..
T Consensus 78 ----------~~~~~~~~~~~~~~~~~d~ilIDTaGr~-----~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~ 142 (213)
T d1vmaa2 78 ----------PAAVAFDAVAHALARNKDVVIIDTAGRL-----HTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG 142 (213)
T ss_dssp ----------HHHHHHHHHHHHHHTTCSEEEEEECCCC-----SCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH
T ss_pred ----------HHHHHHHHHHHHHHcCCCEEEEeccccc-----cchHHHHHHHHHHHhhhhhccccccceeEEeeccccC
Confidence 1122222222223456788888877543 222334555555443322 2346788899874
Q ss_pred C
Q 000114 1513 N 1513 (2158)
Q Consensus 1513 n 1513 (2158)
.
T Consensus 143 ~ 143 (213)
T d1vmaa2 143 Q 143 (213)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.21 E-value=0.23 Score=53.70 Aligned_cols=119 Identities=15% Similarity=0.231 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHhcCC----CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCC
Q 000114 1343 NPIQTQVFTVLYNTD----DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGL 1418 (2158)
Q Consensus 1343 ~~iQ~q~~~~l~~~~----~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~ 1418 (2158)
|..-..++..+.++. ..+++.||+|+|||... .++.+.+.. .+. .++|+ +...+..+....+...
T Consensus 18 N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl-~A~~~~~~~--~~~--~~~~~-~~~~~~~~~~~~~~~~----- 86 (213)
T d1l8qa2 18 NRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLL-QAAGNEAKK--RGY--RVIYS-SADDFAQAMVEHLKKG----- 86 (213)
T ss_dssp THHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHH-HHHHHHHHH--TTC--CEEEE-EHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHH-HHHHHHhcc--Ccc--ceEEe-chHHHHHHHHHHHHcc-----
Confidence 444444444544321 23899999999999766 455555544 122 44444 5555555555444310
Q ss_pred CcEEEEEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHH-HHHHHHHHHhh
Q 000114 1419 GMRVVELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEV-IVSRMRYIASQ 1497 (2158)
Q Consensus 1419 g~~v~~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~-~isrl~~i~~~ 1497 (2158)
.+..+.. .+...++++||++|.+.+.. .++. +..-+..+.
T Consensus 87 --------------------------~~~~~~~---------~~~~~dll~iDDi~~i~~~~--~~~~~lf~lin~~~-- 127 (213)
T d1l8qa2 87 --------------------------TINEFRN---------MYKSVDLLLLDDVQFLSGKE--RTQIEFFHIFNTLY-- 127 (213)
T ss_dssp --------------------------CHHHHHH---------HHHTCSEEEEECGGGGTTCH--HHHHHHHHHHHHHH--
T ss_pred --------------------------chhhHHH---------HHhhccchhhhhhhhhcCch--HHHHHHHHHHHHHh--
Confidence 0111111 14568999999999986432 2222 233233222
Q ss_pred cCCCceEEEeccCCC
Q 000114 1498 VENKIRIVALSTSLA 1512 (2158)
Q Consensus 1498 ~~~~~riV~lSATl~ 1512 (2158)
..+.++|+.|...|
T Consensus 128 -~~~~~iiits~~~p 141 (213)
T d1l8qa2 128 -LLEKQIILASDRHP 141 (213)
T ss_dssp -HTTCEEEEEESSCG
T ss_pred -hccceEEEecCCcc
Confidence 34667666665433
|
| >d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Hef domain-like domain: DNA repair endonuclease XPF species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.20 E-value=0.033 Score=47.77 Aligned_cols=56 Identities=20% Similarity=0.238 Sum_probs=47.8
Q ss_pred CccccCCCCHHHHHHHHhCCCCchhhccCChHHhhhhhcCchhHHHHHHHHhc-CCc
Q 000114 1143 PLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRFPKMGRTLHKFVHQ-FPK 1198 (2158)
Q Consensus 1143 ~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~P~ 1198 (2158)
.|.++||||+..+++|-++==+++.+...+.+||.++.+.++.++.|++++|+ ||.
T Consensus 4 ~L~~iPGIg~~~~~~Ll~~f~Si~~l~~As~~eL~~v~G~~~~A~~i~~f~~~~~~~ 60 (62)
T d2a1ja1 4 FLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILGNAANAKQLYDFIHTSFAE 60 (62)
T ss_dssp HHHTSTTCCHHHHHHHHHHCSSHHHHHTCCHHHHHHHHSCHHHHHHHHHHHHCCCCC
T ss_pred HHhcCCCCCHHHHHHHHHHhccHHHHHhCCHHHHHHCcCcHHHHHHHHHHHhhhhcc
Confidence 47899999999999998653378899999999999999866789999999986 443
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.04 E-value=0.45 Score=52.28 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=18.6
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHH
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLA 537 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~ 537 (2158)
.+|++||+|+|||.++.+ +.+.+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~-~~~~l~ 59 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARL-LAKGLN 59 (239)
T ss_dssp EEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred eEEEECCCCCcHHHHHHH-HHHHhc
Confidence 489999999999998764 445554
|
| >d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.97 E-value=0.062 Score=46.08 Aligned_cols=54 Identities=15% Similarity=0.103 Sum_probs=49.9
Q ss_pred cccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHcc
Q 000114 1979 LLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 2035 (2158)
Q Consensus 1979 L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~ 2035 (2158)
.++.+||++..+++|+++| +.|+.+|..++.++..++-++++...++|.+.+++
T Consensus 5 ~L~~~Gig~~~~~kL~~aG---~~Tve~ia~~t~~~L~~i~Gi~e~~a~KIi~~A~k 58 (64)
T d1szpa1 5 KLQVNGITMADVKKLRESG---LHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAAR 58 (64)
T ss_dssp GGCCTTCCHHHHHHHHTTS---CCSHHHHHHSCSHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HHhHCCCCHHHHHHHHHcC---CCcHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999 99999999999999988889999999999888876
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.90 E-value=0.16 Score=54.75 Aligned_cols=125 Identities=13% Similarity=0.136 Sum_probs=60.1
Q ss_pred cEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEc-ccHHHHHHHHHHHHHHhcCCCCcEEEEEcCCcchhhhccc
Q 000114 1359 NVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA-PLEALAKERYRDWEIKFGQGLGMRVVELTGETAMDLKLLE 1437 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~Ia-P~raLa~q~~~~~~~~f~~~~g~~v~~ltG~~~~~~~~l~ 1437 (2158)
-+++++|||+|||....=-+. ++.. .+.. -+++-+ ..|.=+.++.+.|.+.++ +.+....
T Consensus 14 vi~lvGptGvGKTTTiAKLA~-~~~~--~g~k-V~lit~Dt~R~ga~eQL~~~a~~l~----v~~~~~~----------- 74 (211)
T d1j8yf2 14 VIMLVGVQGTGKATTAGKLAY-FYKK--KGFK-VGLVGADVYRPAALEQLQQLGQQIG----VPVYGEP----------- 74 (211)
T ss_dssp EEEEECSCCC----HHHHHHH-HHHH--TTCC-EEEEECCCSSHHHHHHHHHHHHHHT----CCEECCT-----------
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH--CCCc-eEEEEeeccccchhHHHHHhccccC----cceeecc-----------
Confidence 366789999999977543332 3333 2331 233333 357778888888876654 3332211
Q ss_pred CCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCceEEEeccCCC
Q 000114 1438 KGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIRIVALSTSLA 1512 (2158)
Q Consensus 1438 ~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~riV~lSATl~ 1512 (2158)
+++.+....++........+.++++||=+=+.. .......+..+..+.......-.++.++|+..
T Consensus 75 -------~~~~~~~~~~~a~~~~~~~~~d~IlIDTaGr~~---~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~ 139 (211)
T d1j8yf2 75 -------GEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHG---YGEEAALLEEMKNIYEAIKPDEVTLVIDASIG 139 (211)
T ss_dssp -------TCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCC---TTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred -------cchhhhHHHHHHHHHhhccCCceEEEecCCcCc---cchhhHHHHHHHHHHhhcCCceEEEEEecccC
Confidence 111121122211111123567888888554321 11112234455555554455566778888864
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.78 E-value=0.32 Score=51.92 Aligned_cols=116 Identities=10% Similarity=-0.013 Sum_probs=64.8
Q ss_pred HHHHHHHHhcCC--CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcCCCCcEEE
Q 000114 1346 QTQVFTVLYNTD--DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQGLGMRVV 1423 (2158)
Q Consensus 1346 Q~q~~~~l~~~~--~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~~~g~~v~ 1423 (2158)
|.+.+..+.+.+ .++++.||.|+|||..+.... +.+.. ....++-.+++.|-..-
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~-~~i~~-~~~~h~D~~~i~~~~~~--------------------- 58 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELP-EYVEK-FPPKASDVLEIDPEGEN--------------------- 58 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHH-HHHHT-SCCCTTTEEEECCSSSC---------------------
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHH-HHHhc-cccCCCCEEEEeCCcCC---------------------
Confidence 677788877643 489999999999998874332 33333 12222245555553100
Q ss_pred EEcCCcchhhhcccCCcEEEeCHHHHHHHHhhhhccccccceeEEEecccccccCCCCChHHHHHHHHHHHHhhcCCCce
Q 000114 1424 ELTGETAMDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQVENKIR 1503 (2158)
Q Consensus 1424 ~ltG~~~~~~~~l~~~~IIV~TPe~l~~l~r~~~~~~~l~~v~llIiDEaH~l~~~~g~~~e~~isrl~~i~~~~~~~~r 1503 (2158)
| .-+.+..+.+...........+++|+||||.+... .-..+.......+.++.
T Consensus 59 -----------------I---~Id~IR~i~~~~~~~~~~~~~KviIId~ad~l~~~-------aqNaLLK~LEEPp~~t~ 111 (198)
T d2gnoa2 59 -----------------I---GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ-------AANAFLKALEEPPEYAV 111 (198)
T ss_dssp -----------------B---CHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH-------HHHHTHHHHHSCCTTEE
T ss_pred -----------------C---CHHHHHHHHHHHhhCcccCCCEEEEEeCccccchh-------hhhHHHHHHhCCCCCce
Confidence 0 01112222222222334456789999999999632 22233334444456788
Q ss_pred EEEeccCC
Q 000114 1504 IVALSTSL 1511 (2158)
Q Consensus 1504 iV~lSATl 1511 (2158)
+++.|...
T Consensus 112 fiLit~~~ 119 (198)
T d2gnoa2 112 IVLNTRRW 119 (198)
T ss_dssp EEEEESCG
T ss_pred eeeccCCh
Confidence 88776653
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.75 E-value=0.19 Score=53.66 Aligned_cols=116 Identities=10% Similarity=0.036 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCC--CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHHhhcccC
Q 000114 500 QSRVYKSALSSA--DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLQMY 577 (2158)
Q Consensus 500 Q~~~i~~~l~~~--~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~~~~~~~ 577 (2158)
|.+.+..+++.+ .++|++||.|+|||..+.... +.+..... ..+-++++.|-..-
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~-~~i~~~~~-------~h~D~~~i~~~~~~--------------- 58 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELP-EYVEKFPP-------KASDVLEIDPEGEN--------------- 58 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHH-HHHHTSCC-------CTTTEEEECCSSSC---------------
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHH-HHHhcccc-------CCCCEEEEeCCcCC---------------
Confidence 666777777654 379999999999998876444 33432211 12236666663110
Q ss_pred CcEEEEEeCCCccCHhhhccccEEEcchhHHHHHHhccCCCccccccceEEeecccccccCChhhHHHHHHHHHHHHhhc
Q 000114 578 DVKVRELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLESIVARTVRQIETT 657 (2158)
Q Consensus 578 gi~v~~l~Gd~~~~~~~~~~~~IiV~TPekld~l~r~~~~~~~l~~v~lIIiDEaH~l~d~rg~~le~iv~r~~~~~~~~ 657 (2158)
.. -+....+.+...........+++||||||.|... .. ..+++.++..
T Consensus 59 ------------I~-------------Id~IR~i~~~~~~~~~~~~~KviIId~ad~l~~~---aq----NaLLK~LEEP 106 (198)
T d2gnoa2 59 ------------IG-------------IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ---AA----NAFLKALEEP 106 (198)
T ss_dssp ------------BC-------------HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH---HH----HHTHHHHHSC
T ss_pred ------------CC-------------HHHHHHHHHHHhhCcccCCCEEEEEeCccccchh---hh----hHHHHHHhCC
Confidence 00 0111111112111233455689999999998532 12 2344555666
Q ss_pred cccccEEEEcccc
Q 000114 658 KEHIRLVGLSATL 670 (2158)
Q Consensus 658 ~~~~riv~lSATl 670 (2158)
+.+..+++.|...
T Consensus 107 p~~t~fiLit~~~ 119 (198)
T d2gnoa2 107 PEYAVIVLNTRRW 119 (198)
T ss_dssp CTTEEEEEEESCG
T ss_pred CCCceeeeccCCh
Confidence 6778888776553
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.20 E-value=0.16 Score=54.51 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=33.7
Q ss_pred CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEc--ccHHHHHHHHHHHHhhcc
Q 000114 512 DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVA--PMKALVAEVVGNLSNRLQ 575 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~ia--P~kaLa~q~~~~~~~~~~ 575 (2158)
.-+++++|||+|||.+..-.+.+ +... +.++.+|+ ..|+=+.++.+.+.+.++
T Consensus 7 ~vi~lvGptGvGKTTTiaKLA~~-~~~~----------g~kV~lit~Dt~R~gA~eQL~~~a~~l~ 61 (207)
T d1okkd2 7 RVVLVVGVNGVGKTTTIAKLGRY-YQNL----------GKKVMFCAGDTFRAAGGTQLSEWGKRLS 61 (207)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH-HHTT----------TCCEEEECCCCSSTTHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHH-HHHC----------CCcEEEEEeccccccchhhHhhcccccC
Confidence 34678999999999776543333 2221 12344443 347888888888887653
|
| >d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.98 E-value=0.081 Score=45.00 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=44.5
Q ss_pred ccccCCCCHHHHHHHHhCCC-CchhhccCChHHhhhhhcC-chhHHHHHHHHhcC
Q 000114 1144 LRQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRF-PKMGRTLHKFVHQF 1196 (2158)
Q Consensus 1144 l~q~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~ 1196 (2158)
|..+||||+.++++|.++|| +++++.+.++++|.++-+. .+.++.|.+.++..
T Consensus 3 L~~i~GIG~~~a~~L~~~g~~sv~~l~~a~~~eL~~i~Gi~~~~A~~i~~~ar~~ 57 (61)
T d1pzna1 3 IEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKA 57 (61)
T ss_dssp SSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHhcCCCHHHHHhCCHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 67899999999999999987 7899999999999998664 45667777776654
|
| >d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Excinuclease UvrC C-terminal domain domain: Excinuclease UvrC C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.96 E-value=0.043 Score=45.86 Aligned_cols=55 Identities=11% Similarity=-0.058 Sum_probs=48.6
Q ss_pred CccccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHcc
Q 000114 1977 SMLLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 2035 (2158)
Q Consensus 1977 s~L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~ 2035 (2158)
|.|-+|||||+..+++|.++ ..|+.++++.+.++..++-++++.-.+.|.+++++
T Consensus 2 S~L~~I~gVG~~~a~~L~~~----F~s~~~i~~As~eeL~~v~GIg~~~A~~I~~~l~N 56 (56)
T d1kfta_ 2 SSLETIEGVGPKRRQMLLKY----MGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH 56 (56)
T ss_dssp CGGGGCTTCSSSHHHHHHHH----HSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHHTC
T ss_pred CCcccCCCccHHHHHHHHHH----hCCHHHHHHhhHHHHHhcCCCCHHHHHHHHHHHcC
Confidence 66889999999999998765 67999999999999988888999999999988763
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.89 E-value=0.4 Score=51.76 Aligned_cols=63 Identities=24% Similarity=0.438 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHcCC----CcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 497 NRVQSRVYKSALSSA----DNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 497 ~~iQ~~~i~~~l~~~----~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
|..-..++..+.+.. ..++++||+|+|||-.+. ++.+.+... +..++| .+...+..+....+.
T Consensus 18 N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~-A~~~~~~~~----------~~~~~~-~~~~~~~~~~~~~~~ 84 (213)
T d1l8qa2 18 NRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQ-AAGNEAKKR----------GYRVIY-SSADDFAQAMVEHLK 84 (213)
T ss_dssp THHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHH-HHHHHHHHT----------TCCEEE-EEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHHH-HHHHHhccC----------ccceEE-echHHHHHHHHHHHH
Confidence 444444444444331 238999999999996543 344444332 123444 466666666655543
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=91.75 E-value=0.23 Score=53.32 Aligned_cols=54 Identities=19% Similarity=0.154 Sum_probs=33.7
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEc-ccHHHHHHHHHHHHHHhc
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIA-PLEALAKERYRDWEIKFG 1415 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~Ia-P~raLa~q~~~~~~~~f~ 1415 (2158)
..+++++|||+|||....=-.. ++.. .+.. -+++-+ ..|.=+.++.+.|.+.++
T Consensus 7 ~vi~lvGptGvGKTTTiaKLA~-~~~~--~g~k-V~lit~Dt~R~gA~eQL~~~a~~l~ 61 (207)
T d1okkd2 7 RVVLVVGVNGVGKTTTIAKLGR-YYQN--LGKK-VMFCAGDTFRAAGGTQLSEWGKRLS 61 (207)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH-HHHT--TTCC-EEEECCCCSSTTHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH-HHHH--CCCc-EEEEEeccccccchhhHhhcccccC
Confidence 4467899999999987643322 2333 2331 333333 357888888888886654
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=91.68 E-value=0.18 Score=56.29 Aligned_cols=19 Identities=37% Similarity=0.672 Sum_probs=16.2
Q ss_pred CCcEEEEccCCCchHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~ 529 (2158)
...+|+.||+|+|||.++-
T Consensus 45 ~~~iLL~GppGtGKT~la~ 63 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAK 63 (256)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHH
Confidence 3569999999999998764
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=90.94 E-value=0.34 Score=53.85 Aligned_cols=19 Identities=37% Similarity=0.728 Sum_probs=16.5
Q ss_pred CCcEEEEccCCchhHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~ 1375 (2158)
...+++.||+|+|||..+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ 63 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAK 63 (256)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEeeCCCCCCccHHHH
Confidence 4569999999999998874
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=90.78 E-value=0.44 Score=51.11 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=27.7
Q ss_pred EEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcc--cHHHHHHHHHHHHhhc
Q 000114 514 ILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAP--MKALVAEVVGNLSNRL 574 (2158)
Q Consensus 514 vlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP--~kaLa~q~~~~~~~~~ 574 (2158)
+++++|||+|||.+..--+.+. ... +.++.+|+- .|.=+.++.+.+.+.+
T Consensus 15 i~lvGptGvGKTTTiAKLA~~~-~~~----------g~kV~lit~Dt~R~ga~eQL~~~a~~l 66 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLAYFY-KKK----------GFKVGLVGADVYRPAALEQLQQLGQQI 66 (211)
T ss_dssp EEEECSCCC----HHHHHHHHH-HHT----------TCCEEEEECCCSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH-HHC----------CCceEEEEeeccccchhHHHHHhcccc
Confidence 6678999999997754333333 221 123444433 4777888888887765
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=90.23 E-value=0.24 Score=54.79 Aligned_cols=19 Identities=37% Similarity=0.587 Sum_probs=16.3
Q ss_pred CCcEEEEccCCchhHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~ 1375 (2158)
...+|+.||+|+|||.++.
T Consensus 42 ~~giLl~GppGtGKT~la~ 60 (247)
T d1ixza_ 42 PKGVLLVGPPGVGKTHLAR 60 (247)
T ss_dssp CSEEEEECCTTSSHHHHHH
T ss_pred CceEEEecCCCCChhHHHH
Confidence 3469999999999998873
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=89.67 E-value=0.1 Score=60.25 Aligned_cols=56 Identities=18% Similarity=0.384 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHH
Q 000114 495 QLNRVQSRVYKSALSSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKAL 562 (2158)
Q Consensus 495 ~l~~iQ~~~i~~~l~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaL 562 (2158)
...+-+...+..+...+.|++|+||||||||... -+++..+ . ...+++.|--+.+|
T Consensus 150 ~~~~~~~~~l~~~v~~~~nili~G~tgSGKTT~l-~al~~~i----~-------~~~rivtiEd~~El 205 (323)
T d1g6oa_ 150 DNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYI-KSIMEFI----P-------KEERIISIEDTEEI 205 (323)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEEEESTTSSHHHHH-HHHGGGS----C-------TTCCEEEEESSCCC
T ss_pred ccHHHHHHHHHHHHHhCCCEEEEeeccccchHHH-HHHhhhc----c-------cccceeeccchhhh
Confidence 3456677788888889999999999999999653 3333332 1 23378888777776
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.46 E-value=0.5 Score=49.75 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=19.9
Q ss_pred CCCcEEEEccCCCchHHHHHHHHHHH
Q 000114 510 SADNILLCAPTGAGKTNVAVLTILQQ 535 (2158)
Q Consensus 510 ~~~nvlv~APTGsGKT~~a~l~il~~ 535 (2158)
+..|+++++|.|.|||.+..-.+.+.
T Consensus 42 ~k~n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCeEEEecCCcccHHHHHHHHHHH
Confidence 45699999999999998775444333
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.17 E-value=0.62 Score=50.38 Aligned_cols=32 Identities=13% Similarity=0.165 Sum_probs=22.4
Q ss_pred HHHHHHHHcCC--CcEEEEccCCCchHHHHHHHH
Q 000114 501 SRVYKSALSSA--DNILLCAPTGAGKTNVAVLTI 532 (2158)
Q Consensus 501 ~~~i~~~l~~~--~nvlv~APTGsGKT~~a~l~i 532 (2158)
.+.+..++..+ .++|+.||.|+|||.++.+.+
T Consensus 24 ~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la 57 (224)
T d1sxjb2 24 IDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLA 57 (224)
T ss_dssp HHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHH
Confidence 33444455443 379999999999998875544
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=89.09 E-value=0.52 Score=52.00 Aligned_cols=45 Identities=22% Similarity=0.352 Sum_probs=27.0
Q ss_pred ceEEeecccccccCCh-------hhHHHHHHHHHHHHhhccccccEEEEccc
Q 000114 625 KLLIIDEIHLLHDNRG-------PVLESIVARTVRQIETTKEHIRLVGLSAT 669 (2158)
Q Consensus 625 ~lIIiDEaH~l~d~rg-------~~le~iv~r~~~~~~~~~~~~riv~lSAT 669 (2158)
.+|+|||+|.+...|+ .....+++.++..+.....+.+++.+.+|
T Consensus 103 ~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~vivi~tT 154 (247)
T d1ixza_ 103 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT 154 (247)
T ss_dssp EEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEE
T ss_pred EEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeC
Confidence 4899999998854332 23444566666555554455566666555
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=89.08 E-value=0.86 Score=49.87 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=19.1
Q ss_pred cEEEEccCCchhHHHHHHHHHHHHHh
Q 000114 1359 NVLVAAPTGSGKTICSEFAILRNHQK 1384 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~l~il~~l~~ 1384 (2158)
++|+.||+|+|||.++. .+.+.+..
T Consensus 36 ~~Ll~Gp~G~GKtt~a~-~~~~~l~~ 60 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIAR-LLAKGLNC 60 (239)
T ss_dssp EEEEECSTTSSHHHHHH-HHHHHHHC
T ss_pred eEEEECCCCCcHHHHHH-HHHHHhcC
Confidence 48999999999999885 44555543
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=88.75 E-value=0.31 Score=57.84 Aligned_cols=67 Identities=21% Similarity=0.221 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHhc----CCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHHHHHHHHHHHHHhcC
Q 000114 1342 FNPIQTQVFTVLYN----TDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEALAKERYRDWEIKFGQ 1416 (2158)
Q Consensus 1342 ~~~iQ~q~~~~l~~----~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raLa~q~~~~~~~~f~~ 1416 (2158)
|.-=|=+||..+.+ +....+|.|-||||||++.. .+++.. ++ .+|||+|+..+|.|.+++++..+++
T Consensus 12 p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA-~l~~~~-----~r--p~LVVt~n~~~A~qL~~dL~~~l~~ 82 (413)
T d1t5la1 12 PQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTIS-NVIAQV-----NK--PTLVIAHNKTLAGQLYSELKEFFPH 82 (413)
T ss_dssp CCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHH-HHHHHH-----TC--CEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHH-HHHHHh-----CC--CEEEEeCCHHHHHHHHHHHHHHcCC
Confidence 44456666665543 45678999999999996552 333322 22 6899999999999999999966654
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=87.77 E-value=0.69 Score=47.72 Aligned_cols=24 Identities=29% Similarity=0.596 Sum_probs=17.4
Q ss_pred cEEEEccCCCchHHHHHHHHHHHHH
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQLA 537 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l~ 537 (2158)
++++.||+|||||..+ ..++..+.
T Consensus 2 ki~I~G~~G~GKSTLl-~~i~~~l~ 25 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLV-KKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHG
T ss_pred EEEEECCCCcHHHHHH-HHHHhcCC
Confidence 4899999999999753 34445443
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.58 E-value=0.087 Score=58.59 Aligned_cols=23 Identities=30% Similarity=0.723 Sum_probs=17.6
Q ss_pred cEEEEccCCCchHHHHHHHHHHHH
Q 000114 513 NILLCAPTGAGKTNVAVLTILQQL 536 (2158)
Q Consensus 513 nvlv~APTGsGKT~~a~l~il~~l 536 (2158)
++|+.||.|+|||.++. .+++.+
T Consensus 35 ~lll~Gp~G~GKTt~~~-~la~~l 57 (252)
T d1sxje2 35 HLLLYGPNGTGKKTRCM-ALLESI 57 (252)
T ss_dssp CEEEECSTTSSHHHHHH-THHHHH
T ss_pred eEEEECCCCCCHHHHHH-HHHHhh
Confidence 69999999999998774 333443
|
| >d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.22 E-value=0.15 Score=44.46 Aligned_cols=54 Identities=15% Similarity=0.059 Sum_probs=48.9
Q ss_pred cccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHcc
Q 000114 1979 LLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 2035 (2158)
Q Consensus 1979 L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~ 2035 (2158)
.++.|||++..+++|.++| +.|+.+|+.++.++..++-++++....+|.+.+++
T Consensus 12 ~L~~~Gig~~~i~kL~~aG---~~Tv~~i~~at~~~L~~i~G~~e~~A~KIi~~a~k 65 (70)
T d1b22a_ 12 RLEQCGINANDVKKLEEAG---FHTVEAVAYAPKKELINIKGISEAKADKILAEAAK 65 (70)
T ss_dssp HHHHTTCSHHHHHHHHTTC---CSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHH
T ss_pred HHhhCCCCHHHHHHHHHcC---cchHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3577999999999999999 99999999999999888888999998998888775
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=87.09 E-value=1.3 Score=45.59 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=18.5
Q ss_pred cEEEEccCCchhHHHHHHHHHHHHHh
Q 000114 1359 NVLVAAPTGSGKTICSEFAILRNHQK 1384 (2158)
Q Consensus 1359 nvli~ApTGSGKTl~a~l~il~~l~~ 1384 (2158)
+++|.||+|||||..+ ..++..+..
T Consensus 2 ki~I~G~~G~GKSTLl-~~i~~~l~~ 26 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLV-KKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHGG
T ss_pred EEEEECCCCcHHHHHH-HHHHhcCCC
Confidence 4899999999999864 445555543
|
| >d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Hef domain-like domain: DNA repair endonuclease XPF species: Aeropyrum pernix [TaxId: 56636]
Probab=86.47 E-value=0.37 Score=41.99 Aligned_cols=53 Identities=13% Similarity=0.176 Sum_probs=46.8
Q ss_pred cccCCCCCHHHHHHHHhCCCCCccCHHHHhcCCHHHHHHHhCCChHHHHHHHHHHcc
Q 000114 1979 LLQLPHFMKDLAKRCQENPGKSIETVFDLVEMEDDERRELLQMSDVQLLDIARFCNR 2035 (2158)
Q Consensus 1979 L~QLP~~~~~~~~~l~~~~~~~i~tv~dl~~~~~~~r~~ll~~~~~~~~~v~~~~~~ 2035 (2158)
|..|||||+..++++.++ ..|+.+++..+.++..++-++++...+.|.++++.
T Consensus 15 L~~IpgIG~~~a~~L~~~----F~s~~~l~~As~eeL~~v~GIG~~~A~~I~~~~~~ 67 (70)
T d2bgwa1 15 LQSFPGIGRRTAERILER----FGSLERFFTASKAEISKVEGIGEKRAEEIKKILMT 67 (70)
T ss_dssp HHTSTTCCHHHHHHHHHH----HSSHHHHTTCCHHHHHHSTTCCHHHHHHHHHHHHS
T ss_pred HcCCCCcCHHHHHHHHHH----hCCHHHHHHcCHHHHHcCCCCCHHHHHHHHHHHhC
Confidence 458999999999998765 67999999999999988888999999999998864
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=86.46 E-value=0.1 Score=60.25 Aligned_cols=56 Identities=23% Similarity=0.209 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEccCCchhHHHHHHHHHHHHHhhcCCCceEEEEEcccHHH
Q 000114 1341 HFNPIQTQVFTVLYNTDDNVLVAAPTGSGKTICSEFAILRNHQKASETGVMRAVYIAPLEAL 1402 (2158)
Q Consensus 1341 ~~~~iQ~q~~~~l~~~~~nvli~ApTGSGKTl~a~l~il~~l~~~~~~~~~~~v~IaP~raL 1402 (2158)
.+.+-+...+..+...+.|++|+||||||||... -+++..+. +.. +++.|--+.||
T Consensus 150 ~~~~~~~~~l~~~v~~~~nili~G~tgSGKTT~l-~al~~~i~---~~~--rivtiEd~~El 205 (323)
T d1g6oa_ 150 DNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYI-KSIMEFIP---KEE--RIISIEDTEEI 205 (323)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEEEESTTSSHHHHH-HHHGGGSC---TTC--CEEEEESSCCC
T ss_pred ccHHHHHHHHHHHHHhCCCEEEEeeccccchHHH-HHHhhhcc---ccc--ceeeccchhhh
Confidence 3446667778888888899999999999999764 44444332 233 78888766665
|
| >d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: RuvA domain 2-like family: Excinuclease UvrC C-terminal domain domain: Excinuclease UvrC C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.13 E-value=0.15 Score=42.51 Aligned_cols=53 Identities=11% Similarity=0.091 Sum_probs=43.4
Q ss_pred CCccccCCCCHHHHHHHHhCCCCchhhccCChHHhhhhhcC-chhHHHHHHHHh
Q 000114 1142 TPLRQFNGIPNEILMKLEKKDFAWERYYDLSPQELGELIRF-PKMGRTLHKFVH 1194 (2158)
Q Consensus 1142 ~~l~q~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~ 1194 (2158)
|.|-++||+|+..+++|.++=-+++.+...+.+||.++-+. ++.++.|++++|
T Consensus 2 S~L~~I~gVG~~~a~~L~~~F~s~~~i~~As~eeL~~v~GIg~~~A~~I~~~l~ 55 (56)
T d1kfta_ 2 SSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 55 (56)
T ss_dssp CGGGGCTTCSSSHHHHHHHHHSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHHT
T ss_pred CCcccCCCccHHHHHHHHHHhCCHHHHHHhhHHHHHhcCCCCHHHHHHHHHHHc
Confidence 56889999999999999876226888888899999988442 678888888876
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.78 E-value=1.1 Score=49.14 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=18.6
Q ss_pred CcEEEEccCCchhHHHHHHHHHHHH
Q 000114 1358 DNVLVAAPTGSGKTICSEFAILRNH 1382 (2158)
Q Consensus 1358 ~nvli~ApTGSGKTl~a~l~il~~l 1382 (2158)
.++++.||+|+|||.++ .++.+.+
T Consensus 34 ~~lll~Gp~G~GKTt~~-~~la~~l 57 (252)
T d1sxje2 34 PHLLLYGPNGTGKKTRC-MALLESI 57 (252)
T ss_dssp CCEEEECSTTSSHHHHH-HTHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHhh
Confidence 36999999999999887 4444444
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.38 E-value=0.44 Score=52.56 Aligned_cols=18 Identities=39% Similarity=0.597 Sum_probs=15.4
Q ss_pred CcEEEEccCCCchHHHHH
Q 000114 512 DNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 512 ~nvlv~APTGsGKT~~a~ 529 (2158)
.++|++||+|+|||.++-
T Consensus 53 ~~lll~GPpG~GKTt~a~ 70 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAH 70 (253)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 369999999999997764
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.18 E-value=0.66 Score=51.52 Aligned_cols=47 Identities=21% Similarity=0.411 Sum_probs=26.7
Q ss_pred ceeEEEecccccccCCC----CChHHHHHHHHHHHHhhcCCCceEEEeccC
Q 000114 1464 QVSLFIIDELHLIGGQG----GPVLEVIVSRMRYIASQVENKIRIVALSTS 1510 (2158)
Q Consensus 1464 ~v~llIiDEaH~l~~~~----g~~~e~~isrl~~i~~~~~~~~riV~lSAT 1510 (2158)
.-.++++||+|.+...+ +.....++..+...........+++.+.+|
T Consensus 97 ~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tT 147 (258)
T d1e32a2 97 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 147 (258)
T ss_dssp CSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEE
T ss_pred CCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCCccEEEeC
Confidence 34689999999987532 233344455444444444445555555454
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=83.89 E-value=2.7 Score=46.60 Aligned_cols=46 Identities=11% Similarity=0.363 Sum_probs=27.5
Q ss_pred cceeEEEecccccccCCCC-----ChHHHHHHHHHHHHhhcCCCceEEEeccC
Q 000114 1463 QQVSLFIIDELHLIGGQGG-----PVLEVIVSRMRYIASQVENKIRIVALSTS 1510 (2158)
Q Consensus 1463 ~~v~llIiDEaH~l~~~~g-----~~~e~~isrl~~i~~~~~~~~riV~lSAT 1510 (2158)
.++++||||=++.+....+ ..+..++.+++.++... ++.+++++-+
T Consensus 146 ~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~--~i~vi~~~q~ 196 (277)
T d1cr2a_ 146 LGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKST--GVVLVVICHL 196 (277)
T ss_dssp TCCSEEEEEEEEC----------CHHHHHHHHHHHHHHHHH--CCEEEEEEEC
T ss_pred cCcceEEEcccccccccccccchhHHHHHHHHHHHHHhhhc--cccceeeccc
Confidence 4688999999998864221 22445667777776543 5667777654
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=82.86 E-value=0.97 Score=53.39 Aligned_cols=67 Identities=18% Similarity=0.216 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHH----cCCCcEEEEccCCCchHHHHHHHHHHHHHhccCCCCCCCCCCcEEEEEcccHHHHHHHHHHHH
Q 000114 496 LNRVQSRVYKSAL----SSADNILLCAPTGAGKTNVAVLTILQQLALNRNDDGSFNHSNYKIVYVAPMKALVAEVVGNLS 571 (2158)
Q Consensus 496 l~~iQ~~~i~~~l----~~~~nvlv~APTGsGKT~~a~l~il~~l~~~~~~~~~~~~~~~kil~iaP~kaLa~q~~~~~~ 571 (2158)
|.-=|=++|..+. .+....++.|-||||||++.. .+++.. . ..+|||+|...+|.|+++.++
T Consensus 12 p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA-~l~~~~---~----------rp~LVVt~n~~~A~qL~~dL~ 77 (413)
T d1t5la1 12 PQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTIS-NVIAQV---N----------KPTLVIAHNKTLAGQLYSELK 77 (413)
T ss_dssp CCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHH-HHHHHH---T----------CCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHH-HHHHHh---C----------CCEEEEeCCHHHHHHHHHHHH
Confidence 3334544444433 345668899999999996542 222222 1 148999999999999999999
Q ss_pred hhccc
Q 000114 572 NRLQM 576 (2158)
Q Consensus 572 ~~~~~ 576 (2158)
.++..
T Consensus 78 ~~l~~ 82 (413)
T d1t5la1 78 EFFPH 82 (413)
T ss_dssp HHCTT
T ss_pred HHcCC
Confidence 98764
|
| >d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: SAM domain-like superfamily: Rad51 N-terminal domain-like family: DNA repair protein Rad51, N-terminal domain domain: DNA repair protein Rad51, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.05 E-value=0.68 Score=39.38 Aligned_cols=51 Identities=20% Similarity=0.124 Sum_probs=42.5
Q ss_pred cccCCCCHHHHHHHHhCCC-CchhhccCChHHhhhhhcC-chhHHHHHHHHhc
Q 000114 1145 RQFNGIPNEILMKLEKKDF-AWERYYDLSPQELGELIRF-PKMGRTLHKFVHQ 1195 (2158)
Q Consensus 1145 ~q~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~ 1195 (2158)
.+.+|+++..+++|+++|+ +++++...++++|.++-++ ++.+.+|.+.+++
T Consensus 6 L~~~Gig~~~~~kL~~aG~~Tve~ia~~t~~~L~~i~Gi~e~~a~KIi~~A~k 58 (64)
T d1szpa1 6 LQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAAR 58 (64)
T ss_dssp GCCTTCCHHHHHHHHTTSCCSHHHHHHSCSHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HhHCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4678999999999999998 7899999999999999775 3455677776665
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=81.58 E-value=0.26 Score=59.26 Aligned_cols=19 Identities=53% Similarity=0.847 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCchHHHHH
Q 000114 511 ADNILLCAPTGAGKTNVAV 529 (2158)
Q Consensus 511 ~~nvlv~APTGsGKT~~a~ 529 (2158)
..|+|+.||||+|||+.+-
T Consensus 49 ksNILliGPTGvGKTlLAr 67 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIAR 67 (443)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred cccEEEECCCCCCHHHHHH
Confidence 3589999999999998774
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=81.20 E-value=0.41 Score=54.64 Aligned_cols=47 Identities=13% Similarity=0.167 Sum_probs=23.8
Q ss_pred ceEEeecccccccCChh-----hHHHHHHHHHHHHhhccccccEEEEccccC
Q 000114 625 KLLIIDEIHLLHDNRGP-----VLESIVARTVRQIETTKEHIRLVGLSATLP 671 (2158)
Q Consensus 625 ~lIIiDEaH~l~d~rg~-----~le~iv~r~~~~~~~~~~~~riv~lSATlp 671 (2158)
.+|+|||+|.+...|+. ..+..+..++..+......-.++.+.||=|
T Consensus 184 ~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~ 235 (321)
T d1w44a_ 184 RVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (321)
T ss_dssp SEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred cEEEeehhhhhccccccCCCCCcchhhhhhhhhhccccccCCCeEEEEeCCC
Confidence 59999999998653321 112344444433332233334666677733
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=81.12 E-value=1.7 Score=48.05 Aligned_cols=24 Identities=29% Similarity=0.345 Sum_probs=19.2
Q ss_pred CCCcEEEEccCCchhHHHHHHHHH
Q 000114 1356 TDDNVLVAAPTGSGKTICSEFAIL 1379 (2158)
Q Consensus 1356 ~~~nvli~ApTGSGKTl~a~l~il 1379 (2158)
+..|++++||.|.|||.+..-.+.
T Consensus 38 ~k~n~lLVG~~GvGKTalv~~la~ 61 (268)
T d1r6bx2 38 RKNNPLLVGESGVGKTAIAEGLAW 61 (268)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCcEEECCCCCcHHHHHHHHHH
Confidence 557999999999999977754433
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=80.12 E-value=0.32 Score=58.50 Aligned_cols=19 Identities=42% Similarity=0.662 Sum_probs=17.0
Q ss_pred CCcEEEEccCCchhHHHHH
Q 000114 1357 DDNVLVAAPTGSGKTICSE 1375 (2158)
Q Consensus 1357 ~~nvli~ApTGSGKTl~a~ 1375 (2158)
..|+|+.+|||+|||+++-
T Consensus 49 ksNILliGPTGvGKTlLAr 67 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIAR 67 (443)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred cccEEEECCCCCCHHHHHH
Confidence 5699999999999998884
|