Citrus Sinensis ID: 000134

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------1690------1700------1710------1720------1730------1740------1750------1760------1770------1780------1790------1800------1810------1820------1830------1840------1850------1860------1870------1880------1890------1900------1910------1920------1930------1940------1950------1960------1970------1980------1990------2000------2010------2020------2030------2040------2050------2060------2070------2080------2090------

MTESDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAAPDTIIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNMRGRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTVHATGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASDHSGASVHGISGQSEVCIQAIFTLLDNLGQWVDDVKQELALSESLTSKQQGSKSKHPASSMHQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGKMYIWWMPWF

ccccHHHHHHHHHcccHHHHHHHHHHcccHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccccccHHHHccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHcHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccEEEECcccccccccccccEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccEEEEccccccEEEccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEcccHHHcccccccccccccccccHHHHHHccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHccccccHcccccccccccccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHcHHHHHHHcccccccc

***SDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVN***VQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAAPDTIIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNMRGRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTVHATGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASD********ISGQSEVCIQAIFTLLDNLGQWVDDVKQELA***********************DQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVR***************FEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQ*ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLC****SNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQ*******PSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRA*******LKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTK**************QRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGKMYIWWMPWF

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Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
Serine/threonine-protein kinase ATR	Probable serine/threonine kinase. Plays a central role in cell-cycle regulation by transmitting DNA damage signals to downstream effectors of cell-cycle progression. May recognize the substrate consensus sequence [ST]-Q and phosphorylate histone variant H2AX to form H2AXS139ph at sites of DNA damage, thereby regulating DNA damage response mechanism. Seems to be required for the G2-phase checkpoint in response to replication blocks but not absolutely required in the G2-arrest response to double-strand breaks. May also be involved in the meiosis process. Required for the basal expression of RNR1 (ribonucleotide reductase large subunit). Acts in concert with telomerase to maintain telomeric DNA tracts. Not required for telomere length homeostasis.	probable	Q9FKS4
Serine/threonine-protein kinase ATR	Probable serine/threonine kinase. Seems to play a central role in cell-cycle regulation by transmitting DNA damage signals to downstream effectors of cell-cycle progression. May recognize the substrate consensus sequence [ST]-Q and phosphorylate histone variant H2AX to form H2AXS139ph at sites of DNA damage, thereby regulating DNA damage response mechanism.	probable	Q5Z987

Prediction of Enzyme Commission Number

EC Number	Description	Confidence Level
2.-.-.-	Transferases.	probable
2.7.-.-	Transferring phosphorous-containing groups.	probable
2.7.11.-	Protein-serine/threonine kinases.	probable
2.7.11.1	Transferred entry: 2.7.11.19.	probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2Y3A, chain A
Confidence level:very confident
Coverage over the Query: 1527-1859,1874-1875,1889-2027,2042-2081
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Template: 2X6H, chain A
Confidence level:very confident
Coverage over the Query: 1615-1855,1894-2028,2041-2083
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View the model in PyMOL

Template: 4FDD, chain A
Confidence level:confident
Coverage over the Query: 12-635,655-691,703-748,762-800
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Template: 1U6G, chain C
Confidence level:probable
Coverage over the Query: 7-131,160-745
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Template: 2XPI, chain A
Confidence level:probable
Coverage over the Query: 1044-1413,1450-1500,1515-1542
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Template: 4G1T, chain A
Confidence level:probable
Coverage over the Query: 1044-1292,1303-1314,1328-1409
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Template: 4ANV, chain A
Confidence level:probable
Coverage over the Query: 1784-1882,1910-2025
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Template: 2YHC, chain A
Confidence level:probable
Coverage over the Query: 1349-1414,1448-1559
View the alignment between query and template
View the model in PyMOL