Citrus Sinensis ID: 000134
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 2096 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FKS4 | 2702 | Serine/threonine-protein | yes | no | 0.990 | 0.768 | 0.704 | 0.0 | |
| Q5Z987 | 2710 | Serine/threonine-protein | yes | no | 0.982 | 0.759 | 0.653 | 0.0 | |
| A2YH41 | 2710 | Serine/threonine-protein | N/A | no | 0.982 | 0.759 | 0.653 | 0.0 | |
| Q9DE14 | 2654 | Serine/threonine-protein | N/A | no | 0.699 | 0.552 | 0.328 | 0.0 | |
| Q13535 | 2644 | Serine/threonine-protein | yes | no | 0.705 | 0.559 | 0.324 | 0.0 | |
| Q9JKK8 | 2635 | Serine/threonine-protein | yes | no | 0.657 | 0.523 | 0.337 | 0.0 | |
| Q02099 | 2386 | Protein kinase rad3 OS=Sc | yes | no | 0.775 | 0.681 | 0.285 | 1e-179 | |
| Q54ER4 | 3157 | Probable serine/threonine | yes | no | 0.449 | 0.298 | 0.328 | 1e-153 | |
| Q9VXG8 | 2517 | Serine/threonine-protein | yes | no | 0.691 | 0.576 | 0.267 | 1e-144 | |
| Q59LR2 | 2325 | Serine/threonine-protein | N/A | no | 0.581 | 0.524 | 0.248 | 1e-121 |
| >sp|Q9FKS4|ATR_ARATH Serine/threonine-protein kinase ATR OS=Arabidopsis thaliana GN=ATR PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 2992 bits (7756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1487/2112 (70%), Positives = 1738/2112 (82%), Gaps = 35/2112 (1%)
Query: 4 SDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFP 63
SD +I +L D+F++V+A A IS+P+ V++SGLG L ++F +LE L +++ +K+ P
Sbjct: 607 SDFDIFSWSLSDDFEQVQAVAAISMPLKVLFSGLGALLHMFPKLEHLLEEKELMIKKAIP 666
Query: 64 ISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQE 123
S GFLSCL G SS D +K AC LLL+ ED +T++ LL+ F CSKCD + E
Sbjct: 667 QSLGFLSCLYG--SSTTDSEKTACHLLLH-EDLKKDETLNSLLQGFRCSKCDKFIEREDE 723
Query: 124 LSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDV 183
+I+ ++ ++ H D+ L ++YF LYDESSEE QL+CV VIRRIL H + D+
Sbjct: 724 KHFRIIETPEMVKLKMDHHRDYFNLQSLYFNLLYDESSEETQLACVEVIRRILGHTSPDI 783
Query: 184 LLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLD 243
L++TRS+WI+C+++LL++ +R+AFC QIG F+Q ++S LFL E+A+ +S E +
Sbjct: 784 LVRTRSQWIRCLQYLLVHVNTDVREAFCAQIGIFVQHPIVSCLFLSEDATEKSCERNFFN 843
Query: 244 VIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASR 303
+I+ + AA D L+++TLLE+TAE+M+AVDV S+ FL L LL++QLD+P++ VR+NAS+
Sbjct: 844 LIEHSLAAAKDLLVIQTLLETTAEVMVAVDVTSELFLICLFLLIDQLDHPNLIVRINASK 903
Query: 304 LIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVK 363
LI +SC+ H+KGG L+S A I NELFD LSVRL SRP +VREFAEA GVETEELV+
Sbjct: 904 LINRSCYIHVKGGFATLLSTASHIQNELFDNLSVRLTSRPNVVREFAEAVLGVETEELVR 963
Query: 364 KMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLL 423
KM+PAVLPKL+V Q+N QA N +NELAK ++TD+VPLIV W+P+VLAFAL+Q +++ LL
Sbjct: 964 KMVPAVLPKLLVYWQENAQAANTLNELAKLIDTDVVPLIVNWLPRVLAFALNQEEDKNLL 1023
Query: 424 SALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLT 483
S L+ Y Q GSDNQEIFAAALPALLDEL+CFVD D+ E + RL R+P I+K+S VLT
Sbjct: 1024 SVLQLYHSQIGSDNQEIFAAALPALLDELVCFVDIADTPETDRRLQRLPDAIKKISKVLT 1083
Query: 484 GNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILV 543
EDLPGFL+NHFVGLLNSIDRKMLHA+D+ LQKQALKRI++LIEM+G +L+TYVPK++V
Sbjct: 1084 NAEDLPGFLQNHFVGLLNSIDRKMLHADDIFLQKQALKRIKLLIEMMGHYLSTYVPKLMV 1143
Query: 544 LLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLL 603
LLMHAI K++LQ EGL VLHFF +L+ VSPSS K+VISQ+FAALIPFLE++K+ P V L
Sbjct: 1144 LLMHAIEKDALQSEGLLVLHFFTRKLADVSPSSIKYVISQIFAALIPFLEKEKEGPHVYL 1203
Query: 604 NKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDG 663
++VVKILE+LVLKNR I+K+HI EFPLLPSI +L E+N AIQEARG M+LKDQL V+G
Sbjct: 1204 DEVVKILEELVLKNRDIVKEHICEFPLLPSIPSLGELNNAIQEARGLMSLKDQLRDIVNG 1263
Query: 664 LNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTV 723
+ HENLNVRYMV CELSKLL ++EDV ALI GE SD+++LS+LI+ LL+GCAEESRT
Sbjct: 1264 MKHENLNVRYMVACELSKLLYNRNEDVAALIAGELVSDMEILSSLITYLLQGCAEESRTT 1323
Query: 724 VGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAAPDT 783
VGQ+LKLVCADCLGA+GA+DPAKV+ SC RFKI+CSDDDLIFELI KHLARAFRAA DT
Sbjct: 1324 VGQRLKLVCADCLGAIGAIDPAKVRVASCSRFKIQCSDDDLIFELIHKHLARAFRAAQDT 1383
Query: 784 IIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNMR 843
IIQDSAALAIQELLKIAGCE SL NV VL +EH+ V SG+ +E+ R
Sbjct: 1384 IIQDSAALAIQELLKIAGCEPSLAGNV-----VVLTPQEHVQVNVSGSRRCGGNNEVKDR 1438
Query: 844 GRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTVHA 903
G+K WDRFS YVKE+IAPCLTSRFQLP+ SD S GPIY PSMSFRRW+ YWIRKLT A
Sbjct: 1439 GQKLWDRFSNYVKELIAPCLTSRFQLPNVSDPGSAGPIYRPSMSFRRWLSYWIRKLTAFA 1498
Query: 904 TGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASDH 963
TGSR SIF ACRGIVRHDMQTA YLLPYLVL+ VCHGTE ARL I++EILSVLDAAAS++
Sbjct: 1499 TGSRVSIFAACRGIVRHDMQTATYLLPYLVLDVVCHGTEAARLSISEEILSVLDAAASEN 1558
Query: 964 SGASVHGIS-GQSEVCIQAIFTLLDNLGQWVDDVKQELA---LSESLTSKQQGSKSKHPA 1019
SG +++ GQSEVC+QA+FTLLDNLGQWVDDVKQ +A +S +Q KSK
Sbjct: 1559 SGVTINSFGVGQSEVCVQAVFTLLDNLGQWVDDVKQGVALSSSLQSSGGRQVAPKSKDQV 1618
Query: 1020 --SSMHQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPA 1077
S+ QD LL QC+YV LL AIPKVTLARASFRCQAYARSLMY ESHVR KSGS NPA
Sbjct: 1619 SNSTTEQDHLLVQCKYVLELLLAIPKVTLARASFRCQAYARSLMYLESHVRGKSGSLNPA 1678
Query: 1078 AEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSC 1137
AEK+G FE+ DVS LM IYS LDEPDGLSG A L KSL+LQD+LL NKKSGNWA+VFT+C
Sbjct: 1679 AEKTGIFENADVSSLMGIYSCLDEPDGLSGFASLSKSLNLQDQLLINKKSGNWADVFTAC 1738
Query: 1138 EQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197
EQALQMEPTSVQRHSDVLNCLLNMCH Q MVTHVDGLISR+P+YKKTWC QGVQAAWRLG
Sbjct: 1739 EQALQMEPTSVQRHSDVLNCLLNMCHHQTMVTHVDGLISRVPEYKKTWCTQGVQAAWRLG 1798
Query: 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIA 1257
+WDLMDEYL GAD EGLL SSS+SNASFD DVAKIL AMMKKD +SV++ I +SKQ LIA
Sbjct: 1799 KWDLMDEYLDGADAEGLLFSSSDSNASFDRDVAKILHAMMKKDQYSVAEGIAISKQALIA 1858
Query: 1258 PLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENR 1317
PLAAAGMDSYTRAYPF+VKLHLL+ELEDF A+L DS+LEKSF SD FSK + NWENR
Sbjct: 1859 PLAAAGMDSYTRAYPFVVKLHLLRELEDFQAVLNGDSYLEKSFSTSDQVFSKAVDNWENR 1918
Query: 1318 LKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQA 1377
L++TQ SLW REPLLAFRR+VFGASGLGA+VGNCWLQYAKLCRLAGHYETA RAILEAQA
Sbjct: 1919 LRFTQSSLWTREPLLAFRRLVFGASGLGAQVGNCWLQYAKLCRLAGHYETAHRAILEAQA 1978
Query: 1378 SGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPV 1437
SGAPNVHMEKAKLLW T+RSD AI ELQQ+LLN P VV ST ISSI SL + P NP P
Sbjct: 1979 SGAPNVHMEKAKLLWITKRSDSAIIELQQSLLNMPEGVVDSTVISSINSLLMAPPNPEPT 2038
Query: 1438 LSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497
+ NTQ+ EK+D+AKTLLLYS+WIH++GQKQK+DV+ LY++V+EL P WEKGYF++AKY
Sbjct: 2039 VRNTQSFKEKKDVAKTLLLYSKWIHHSGQKQKKDVLNLYTQVKELLP-WEKGYFHLAKYY 2097
Query: 1498 DDVLVDARKRQEENSEIG-------------PSEKRWWFYVPDVLLFYAKGLHRGHKNLF 1544
D++ VDARK Q+E+S +EK W Y+ + FYAK LH GHKNLF
Sbjct: 2098 DELYVDARKCQQESSVFSSAGSKKGSVSSNLSTEKAGWDYLFKGMYFYAKALHSGHKNLF 2157
Query: 1545 QALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVS 1604
QALPRLLTLWFDFG+I + +GS+ NK+LK+ + K+MS+MRGCLKDLP YQWLTVLPQLVS
Sbjct: 2158 QALPRLLTLWFDFGTIYKTSGSAGNKELKSTHMKIMSLMRGCLKDLPTYQWLTVLPQLVS 2217
Query: 1605 RICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAH 1664
RICHQN + V +VK+IITSVL Q+PQQGLWIMAAVSKST+P+RREAAAEIIQ A+KG
Sbjct: 2218 RICHQNADTVLMVKNIITSVLHQFPQQGLWIMAAVSKSTVPARREAAAEIIQGARKGFNQ 2277
Query: 1665 GNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTV 1724
+ +NLF QF SL DH IKLCFH GQ +S+ INI+TEFSALKRMMPL IIMPIQQSLT+
Sbjct: 2278 SDRGHNLFIQFASLTDHFIKLCFHGGQPRSKVINIATEFSALKRMMPLDIIMPIQQSLTI 2337
Query: 1725 TLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCK 1784
+LP N E S+ +FS SDLPTISGIADEAEILSSLQRPKKI+LLG+DGI+ PFLCK
Sbjct: 2338 SLPAFHMNNNERHSASVFSGSDLPTISGIADEAEILSSLQRPKKIILLGNDGIEYPFLCK 2397
Query: 1785 PKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLR 1844
PKDDLRKD+RMMEFTAMINRLLSKYPESRRRKLYIRTFAV PLTEDCG+VEWVPHTRGLR
Sbjct: 2398 PKDDLRKDARMMEFTAMINRLLSKYPESRRRKLYIRTFAVAPLTEDCGLVEWVPHTRGLR 2457
Query: 1845 NILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFS 1904
+ILQDIYISCGKFDRQKTNPQIKRIYDQ K E EMLKTKILPMFPPVFHKWFLTTFS
Sbjct: 2458 HILQDIYISCGKFDRQKTNPQIKRIYDQCAVK-KEYEMLKTKILPMFPPVFHKWFLTTFS 2516
Query: 1905 EPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL 1964
EPAAWFR+RVAYAHTTAVWSMVGHIVGLGDRHGENILFDST+GDCVHVDFSCLFDKGL L
Sbjct: 2517 EPAAWFRSRVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTSGDCVHVDFSCLFDKGLQL 2576
Query: 1965 EKPELVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEW 2024
EKPELVPFRLTQNMIDGLGITGYEG F+RVCEITL+VLRTHRETLMS+LETFIHDPLVEW
Sbjct: 2577 EKPELVPFRLTQNMIDGLGITGYEGIFMRVCEITLTVLRTHRETLMSILETFIHDPLVEW 2636
Query: 2025 TKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKN 2084
TKSHKSSGVEV+NPHAQRAIS+IEARLQG VVGV VEGQARRLIA+AVS +N
Sbjct: 2637 TKSHKSSGVEVQNPHAQRAISSIEARLQGVVVGVPL------PVEGQARRLIADAVSLEN 2690
Query: 2085 LGKMYIWWMPWF 2096
LGKMYIWWMPWF
Sbjct: 2691 LGKMYIWWMPWF 2702
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Probable serine/threonine kinase. Plays a central role in cell-cycle regulation by transmitting DNA damage signals to downstream effectors of cell-cycle progression. May recognize the substrate consensus sequence [ST]-Q and phosphorylate histone variant H2AX to form H2AXS139ph at sites of DNA damage, thereby regulating DNA damage response mechanism. Seems to be required for the G2-phase checkpoint in response to replication blocks but not absolutely required in the G2-arrest response to double-strand breaks. May also be involved in the meiosis process. Required for the basal expression of RNR1 (ribonucleotide reductase large subunit). Acts in concert with telomerase to maintain telomeric DNA tracts. Not required for telomere length homeostasis. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|Q5Z987|ATR_ORYSJ Serine/threonine-protein kinase ATR OS=Oryza sativa subsp. japonica GN=Os06g0724700 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2797 bits (7250), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1384/2117 (65%), Positives = 1685/2117 (79%), Gaps = 58/2117 (2%)
Query: 3 ESDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVF 62
E D ++L+LA++ E E++ EA++SLP+IV++SG +L +F++LE++G C+K+ +
Sbjct: 629 ECDLQVLELAIQSETGELQNEALMSLPIIVLYSGPRMLGAMFRKLETIGTLGCKKLWKSI 688
Query: 63 PISFGFLSCLSGTCSSIVDWDKNACKLLL--NVEDDILSQTVDYLLENFWCSKCDTNVVH 120
IS GFLSCL+GT + D N CKL L + E IL+ LL FWC +CD VH
Sbjct: 689 AISLGFLSCLNGT-TDCTDKVGNHCKLFLAKHCEQPILTLN---LLRGFWCPQCDVRTVH 744
Query: 121 NQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGT 180
++ IV+ + + K+++F + +++F+FLY E+SEE +S V V+ RIL H +
Sbjct: 745 IED-QVPIVDIALSEDKNIDFKINMFKAHSLFFKFLYAETSEECIVSIVEVLPRILKHSS 803
Query: 181 RDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENA-SSRSNEL 239
RDVLL + +W++C++FLLL++ KA+RDAF + + FL+ + LF D S ++ +
Sbjct: 804 RDVLLDMKFQWVQCVDFLLLHEMKAVRDAFSSVVSCFLETNAMDILFSDGTGMSGGTSRV 863
Query: 240 KLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRM 299
K +D IK AFT A+DP IL TLLESTA ++ A D+H + F +LL+ QL N VR+
Sbjct: 864 KFMDKIKSAFTEAEDPQILLTLLESTAAIVKASDIHGEVFFCSFVLLIGQLGNHDYIVRV 923
Query: 300 NASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETE 359
A RL+++ C + KGG EL +SK + + L+DYLS RL + P+++ EFAE+ GV+TE
Sbjct: 924 TALRLLQRCCTYCFKGGLELFLSKYFHVRDNLYDYLSSRLLTHPVVISEFAESVLGVKTE 983
Query: 360 ELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADE 419
EL+++M+P+++PKL+VS Q+NDQAV +NELA LN+++VPLIV +PKVL+FAL D
Sbjct: 984 ELIRRMVPSIIPKLIVSHQNNDQAVVTLNELASHLNSELVPLIVNSLPKVLSFALFYEDG 1043
Query: 420 RRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVS 479
+ L S L+FY +TG+D++EIF+AALP LLDE+ICF D E + R+ ++ I+ ++
Sbjct: 1044 QHLSSVLQFYHTETGTDSKEIFSAALPTLLDEIICFPGESDQIETDRRMAKISPTIQNIA 1103
Query: 480 TVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVP 539
+LTGN++LP FL+N FV LLNSID+KMLH+ D++LQKQAL+RI L+EM+G +L+T+ P
Sbjct: 1104 RILTGNDNLPEFLKNDFVRLLNSIDKKMLHSSDVNLQKQALQRIRKLVEMMGPYLSTHAP 1163
Query: 540 KILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNP 599
KI+VLL+ AI+KE+LQ +GL VLHFFI++L+ VS +S K+V+SQV AA IP LER ++ P
Sbjct: 1164 KIMVLLIFAIDKETLQMDGLDVLHFFIKRLAEVSCTSIKYVMSQVVAAFIPSLERCRERP 1223
Query: 600 SVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLA 659
V L K+V+ILE+LV+KN +LKQHI E PLLPS+ +L+ VNK IQEARG MTL+D L
Sbjct: 1224 LVHLGKIVEILEELVVKNIILLKQHIRELPLLPSLPSLSGVNKVIQEARGLMTLQDHLKD 1283
Query: 660 AVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEE 719
AV+GLNHE+LNVRYMV CEL+KL + D+T+LI GE +DLD++S+LI SLL+GCAEE
Sbjct: 1284 AVNGLNHESLNVRYMVACELNKLFNDRRGDITSLIIGEDIADLDIISSLIMSLLKGCAEE 1343
Query: 720 SRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRA 779
SRTVVGQ+LKLVCADCLGALGAVDPAK K SC+RFKIECSDDDLIFELI KHLARAFRA
Sbjct: 1344 SRTVVGQRLKLVCADCLGALGAVDPAKFKVMSCERFKIECSDDDLIFELIHKHLARAFRA 1403
Query: 780 APDTIIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHE 839
A DT +QDSAALAIQELLK++GC++ +E+ +
Sbjct: 1404 ASDTTVQDSAALAIQELLKLSGCQSLPNESSSC--------------------------K 1437
Query: 840 MNMRGRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKL 899
M+ RG+K W RFS YVKEIIAPCLTSRF LPS +D+ GPIY P+MSFRRWIYYWIRKL
Sbjct: 1438 MSKRGQKLWGRFSSYVKEIIAPCLTSRFHLPSVNDATLAGPIYRPTMSFRRWIYYWIRKL 1497
Query: 900 TVHATGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAA 959
T HATGSR+ IF ACRGIVRHDM TAIYLLPYLVLN VC+GT EAR I +EILSVL+AA
Sbjct: 1498 TSHATGSRSGIFGACRGIVRHDMPTAIYLLPYLVLNVVCYGTPEARQSITEEILSVLNAA 1557
Query: 960 ASDHSGASVHGISG-QSEVCIQAIFTLLDNLGQWVDDVKQELALSES--LTSKQQGSKSK 1016
AS+ SGA VHGI+G QSEVCIQA+FTLLDNLGQWVDD+KQE+ALS+S + +QG K +
Sbjct: 1558 ASESSGAIVHGITGGQSEVCIQAVFTLLDNLGQWVDDLKQEIALSQSNYAMAGRQGGKLR 1617
Query: 1017 HPASSMH-QDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFN 1075
++SM+ QDQLL QC V+ LL+AIPKVTLA+ASFRCQA+AR+LMYFESHVREKSGS N
Sbjct: 1618 DESNSMYDQDQLLVQCSNVAELLAAIPKVTLAKASFRCQAHARALMYFESHVREKSGSSN 1677
Query: 1076 PAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFT 1135
PAA+ SG F D+D+SFLMEIY LDEPDGL GLA L KS +LQD+L+ N+K+GNWAEV T
Sbjct: 1678 PAADCSGAFSDDDISFLMEIYGGLDEPDGLLGLANLRKSSTLQDQLIINEKAGNWAEVLT 1737
Query: 1136 SCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWR 1195
CEQ+LQMEP SV RH DVLNCLLNMCHLQAM+ HVDGL+ RIPQ KKTWCMQGVQAAWR
Sbjct: 1738 LCEQSLQMEPDSVHRHCDVLNCLLNMCHLQAMIAHVDGLVYRIPQSKKTWCMQGVQAAWR 1797
Query: 1196 LGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVL 1255
LGRWDLMDEYL+ AD+ GL+C SSE+NASFDM +AKI AMMKKD F V++KI SKQ L
Sbjct: 1798 LGRWDLMDEYLAEADK-GLVCRSSENNASFDMGLAKIFNAMMKKDQFMVAEKIAQSKQAL 1856
Query: 1256 IAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWE 1315
+ PLAAAGMDSY RAYP+IVKLH+L+ELEDF+++L ++SFLEK F D KF KL +WE
Sbjct: 1857 LVPLAAAGMDSYMRAYPYIVKLHMLRELEDFNSLLGDESFLEKPFAADDPKFLKLTKDWE 1916
Query: 1316 NRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEA 1375
NRL+ TQPSLWAREPLLAFRRMV+ S + A+ GNCWLQYA+LCRLAGHYETA RAILEA
Sbjct: 1917 NRLRCTQPSLWAREPLLAFRRMVYNLSHMNAQAGNCWLQYARLCRLAGHYETAHRAILEA 1976
Query: 1376 QASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPL 1435
ASGAPN HMEKAK LW+ R+SD AIAELQQ LLN P +V+G T +SS++SLSL P
Sbjct: 1977 DASGAPNAHMEKAKYLWNIRKSDSAIAELQQTLLNMPADVLGPTVLSSLSSLSLA--LPN 2034
Query: 1436 PVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAK 1495
LS TQ E D++KTLLLY+RWIHYTGQKQ D+ +LYSRV +L+P WEKG+F +AK
Sbjct: 2035 APLSVTQASKENPDVSKTLLLYTRWIHYTGQKQSNDIKSLYSRVADLRPKWEKGFFCIAK 2094
Query: 1496 YCDDVLVDARKRQEEN---SEIGP-------------SEKRWWFYVPDVLLFYAKGLHRG 1539
+ DD+LVDAR+RQE+ S +GP EK WW +P VL+ YA+GLHRG
Sbjct: 2095 FYDDLLVDARRRQEDKKIASGVGPVPPSSTGSLTTATEEKPWWDMLPVVLIQYARGLHRG 2154
Query: 1540 HKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVL 1599
HKNLFQALPRLLTLWF+FGSI + GSS NK +K V+ +++ IMRGCLKDLP YQWLTVL
Sbjct: 2155 HKNLFQALPRLLTLWFEFGSIYIQDGSSFNKPMKEVHIRLLGIMRGCLKDLPPYQWLTVL 2214
Query: 1600 PQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAK 1659
QL+SRICHQN E+V+LVK I+TS+LR+YPQQ LW+MAAVSKST+ +RR+AAAEI+Q+AK
Sbjct: 2215 SQLISRICHQNIEVVKLVKCIVTSILREYPQQALWMMAAVSKSTVAARRDAAAEILQSAK 2274
Query: 1660 KGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQ 1719
KGS G+ +N LF QF SLIDHLIKLCFH GQ K+R INISTEFS+LKRMMPLGII+PIQ
Sbjct: 2275 KGSRRGSDSNALFMQFPSLIDHLIKLCFHPGQPKARAINISTEFSSLKRMMPLGIILPIQ 2334
Query: 1720 QSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKR 1779
Q+LTVTLP D N+T+ + FS S+ PTI+GIAD+AEIL+SLQ+PKK+V +GSDGI R
Sbjct: 2335 QALTVTLPSYDTNMTDQSTFRPFSVSEHPTIAGIADDAEILNSLQKPKKVVFIGSDGISR 2394
Query: 1780 PFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPH 1839
PFLCKPKDDLRKDSRMMEF AMINRLLSK PESRRRKLYIRTFAV+PLTEDCGMVEWVP+
Sbjct: 2395 PFLCKPKDDLRKDSRMMEFNAMINRLLSKVPESRRRKLYIRTFAVVPLTEDCGMVEWVPN 2454
Query: 1840 TRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWF 1899
TRGLR ILQDIYI+CGKFDR KTNPQIK+IYDQ QGK+PE EMLK KILPMFPPVFHKWF
Sbjct: 2455 TRGLRQILQDIYITCGKFDRMKTNPQIKKIYDQLQGKMPE-EMLKAKILPMFPPVFHKWF 2513
Query: 1900 LTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD 1959
LTTFSEPAAW RAR AYAHTTAVWSMVGHIVGLGDRHGENIL DSTTGDC+HVDFSCLFD
Sbjct: 2514 LTTFSEPAAWIRARAAYAHTTAVWSMVGHIVGLGDRHGENILLDSTTGDCIHVDFSCLFD 2573
Query: 1960 KGLLLEKPELVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHD 2019
KGLLLEKPE+VPFR TQNM+DGLGITGYEG F++VCEITLSVLRTH+E LM+VLETFIHD
Sbjct: 2574 KGLLLEKPEVVPFRFTQNMVDGLGITGYEGVFVKVCEITLSVLRTHKEALMTVLETFIHD 2633
Query: 2020 PLVEWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEA 2079
PLVEWTKSHKSSGVEV NPHAQRAISNI RLQG VVGV AAPSLPL+VEGQARRLIAEA
Sbjct: 2634 PLVEWTKSHKSSGVEVRNPHAQRAISNITERLQGVVVGVNAAPSLPLSVEGQARRLIAEA 2693
Query: 2080 VSHKNLGKMYIWWMPWF 2096
VSH NLGKMY+WWM WF
Sbjct: 2694 VSHSNLGKMYVWWMAWF 2710
|
Probable serine/threonine kinase. Seems to play a central role in cell-cycle regulation by transmitting DNA damage signals to downstream effectors of cell-cycle progression. May recognize the substrate consensus sequence [ST]-Q and phosphorylate histone variant H2AX to form H2AXS139ph at sites of DNA damage, thereby regulating DNA damage response mechanism. Oryza sativa subsp. japonica (taxid: 39947) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|A2YH41|ATR_ORYSI Serine/threonine-protein kinase ATR OS=Oryza sativa subsp. indica GN=OsI_023634 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 2795 bits (7245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1384/2117 (65%), Positives = 1685/2117 (79%), Gaps = 58/2117 (2%)
Query: 3 ESDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVF 62
E D ++L+LA++ E E++ EA++SLP+IV++SG +L +F++LE++G C+K+ +
Sbjct: 629 ECDLQVLELAIQSETGELQNEALMSLPIIVLYSGPRMLGAMFRKLETIGTLGCKKLWKSI 688
Query: 63 PISFGFLSCLSGTCSSIVDWDKNACKLLL--NVEDDILSQTVDYLLENFWCSKCDTNVVH 120
IS GFLSCL+GT + D N CKL L + E IL+ LL FWC +CD VH
Sbjct: 689 AISLGFLSCLNGT-TDCTDKVGNHCKLFLAKHCEQPILTLN---LLRGFWCPQCDVRTVH 744
Query: 121 NQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGT 180
++ IV+ + + K+++F + +++F+FLY E+SEE +S V V+ RIL H +
Sbjct: 745 IED-QVPIVDIALSEDKNIDFKINMFKAHSLFFKFLYAETSEECIVSIVEVLPRILKHSS 803
Query: 181 RDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENA-SSRSNEL 239
RDVLL + +W++C++FLLL++ KA+RDAF + + FL+ + LF D S ++ +
Sbjct: 804 RDVLLDMKFQWVQCVDFLLLHEMKAVRDAFSSVVSCFLETNAMDILFSDGTGMSGGTSRV 863
Query: 240 KLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRM 299
K +D IK AFT A+DP IL TLLESTA ++ A D+H + F +LL+ QL N VR+
Sbjct: 864 KFMDKIKSAFTEAEDPQILLTLLESTAAIVKASDIHGEVFFCSFVLLIGQLGNHDYIVRV 923
Query: 300 NASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETE 359
A RL+++ C + KGG EL +SK + + L+DYLS RL + P+++ EFAE+ GV+TE
Sbjct: 924 TALRLLQRCCTYCFKGGLELFLSKYFHVRDNLYDYLSSRLLTHPVVISEFAESVLGVKTE 983
Query: 360 ELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADE 419
EL+++M+P+++PKL+VS Q+NDQAV +NELA LN+++VPLIV +PKVL+FAL D
Sbjct: 984 ELIRRMVPSIIPKLIVSHQNNDQAVVTLNELASHLNSELVPLIVNSLPKVLSFALFYEDG 1043
Query: 420 RRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVS 479
+ L S L+FY +TG+D++EIF+AALP LLDE+ICF D E + R+ ++ I+ ++
Sbjct: 1044 QHLSSVLQFYHTETGTDSKEIFSAALPTLLDEIICFPGESDQIETDRRMAKISPTIQNIA 1103
Query: 480 TVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVP 539
+L GN++LP FL+N FV LLNSID+KMLH+ D++LQKQAL+RI L+EM+G +L+T+ P
Sbjct: 1104 RILIGNDNLPEFLKNDFVRLLNSIDKKMLHSSDVNLQKQALQRIRKLVEMMGPYLSTHAP 1163
Query: 540 KILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNP 599
KI+VLL+ AI+KE+LQ +GL VLHFFI++L+ VS +S K+V+SQV AA IP LER ++ P
Sbjct: 1164 KIMVLLIFAIDKETLQMDGLDVLHFFIKRLAEVSCTSIKYVMSQVVAAFIPSLERCRERP 1223
Query: 600 SVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLA 659
V L K+V+ILE+LV+KN +LKQHI E PLLPS+ +L+ VNK IQEARG MTL+D L
Sbjct: 1224 LVHLGKIVEILEELVVKNIILLKQHIRELPLLPSLPSLSGVNKVIQEARGLMTLQDHLKD 1283
Query: 660 AVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEE 719
AV+GLNHE+LNVRYMV CEL+KL + ED+T+LI GE +DLD++S+LI SLL+GCAEE
Sbjct: 1284 AVNGLNHESLNVRYMVACELNKLFNDRREDITSLIIGEDIADLDIISSLIMSLLKGCAEE 1343
Query: 720 SRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRA 779
SRTVVGQ+LKLVCADCLGALGAVDPAK K SC+RFKIECSDDDLIFELI KHLARAFRA
Sbjct: 1344 SRTVVGQRLKLVCADCLGALGAVDPAKFKVMSCERFKIECSDDDLIFELIHKHLARAFRA 1403
Query: 780 APDTIIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHE 839
A DT +QDSAALAIQELLK++GC++ +E+ +
Sbjct: 1404 ASDTTVQDSAALAIQELLKLSGCQSLPNESSSC--------------------------K 1437
Query: 840 MNMRGRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKL 899
M+ RG+K W RFS YVKEIIAPCLTSRF LPS +D+ GPIY P+MSFRRWIYYWIRKL
Sbjct: 1438 MSKRGQKLWGRFSSYVKEIIAPCLTSRFHLPSVNDATLAGPIYRPTMSFRRWIYYWIRKL 1497
Query: 900 TVHATGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAA 959
T HATGSR+ IF ACRGIVRHDM TAIYLLPYLVLN VC+GT EAR I +EILSVL+AA
Sbjct: 1498 TSHATGSRSGIFGACRGIVRHDMPTAIYLLPYLVLNVVCYGTPEARQSITEEILSVLNAA 1557
Query: 960 ASDHSGASVHGISG-QSEVCIQAIFTLLDNLGQWVDDVKQELALSES--LTSKQQGSKSK 1016
AS+ SGA VHGI+G QSEVCIQA+FTLLDNLGQWVDD+KQE+ALS+S + +QG K +
Sbjct: 1558 ASESSGAIVHGITGGQSEVCIQAVFTLLDNLGQWVDDLKQEIALSQSNYAMAGRQGGKLR 1617
Query: 1017 HPASSMH-QDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFN 1075
++SM+ QDQLL QC V+ LL+AIPKVTLA+ASFRCQA+AR+LMYFESHVREKSGS N
Sbjct: 1618 DESNSMYDQDQLLVQCSNVAELLAAIPKVTLAKASFRCQAHARALMYFESHVREKSGSSN 1677
Query: 1076 PAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFT 1135
PAA+ SG F D+D+SFLMEIY LDEPDGL GLA L KS +LQD+L+ N+K+GNWAEV T
Sbjct: 1678 PAADCSGAFSDDDISFLMEIYGGLDEPDGLLGLANLRKSSTLQDQLIINEKAGNWAEVLT 1737
Query: 1136 SCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWR 1195
CEQ+LQMEP SV RH DVLNCLLNMCHLQAM+ HVDGL+ RIPQ KKTWCMQGVQAAWR
Sbjct: 1738 LCEQSLQMEPDSVHRHCDVLNCLLNMCHLQAMIAHVDGLVYRIPQSKKTWCMQGVQAAWR 1797
Query: 1196 LGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVL 1255
LGRWDLMDEYL+ AD+ GL+C SSE+NASFDM +AKI AMMKKD F V++KI SKQ L
Sbjct: 1798 LGRWDLMDEYLAEADK-GLVCRSSENNASFDMGLAKIFNAMMKKDQFMVAEKIAQSKQAL 1856
Query: 1256 IAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWE 1315
+ PLAAAGMDSY RAYP+IVKLH+L+ELEDF+++L ++SFLEK F D KF KL +WE
Sbjct: 1857 LVPLAAAGMDSYMRAYPYIVKLHMLRELEDFNSLLGDESFLEKPFAADDPKFLKLTKDWE 1916
Query: 1316 NRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEA 1375
NRL+ TQPSLWAREPLLAFRRMV+ S + A+ GNCWLQYA+LCRLAGHYETA RAILEA
Sbjct: 1917 NRLRCTQPSLWAREPLLAFRRMVYNLSHMNAQAGNCWLQYARLCRLAGHYETAHRAILEA 1976
Query: 1376 QASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPL 1435
ASGAPN HMEKAK LW+ R+SD AIAELQQ LLN P +V+G T +SS++SLSL P
Sbjct: 1977 DASGAPNAHMEKAKYLWNIRKSDSAIAELQQTLLNMPADVLGPTVLSSLSSLSLA--LPN 2034
Query: 1436 PVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAK 1495
LS TQ E D++KTLLLY+RWIHYTGQKQ D+ +LYSRV +L+P WEKG+F +AK
Sbjct: 2035 APLSVTQASKENPDVSKTLLLYTRWIHYTGQKQSNDIKSLYSRVADLRPKWEKGFFCIAK 2094
Query: 1496 YCDDVLVDARKRQEEN---SEIGP-------------SEKRWWFYVPDVLLFYAKGLHRG 1539
+ DD+LVDAR+RQE+ S +GP EK WW +P VL+ YA+GLHRG
Sbjct: 2095 FYDDLLVDARRRQEDKKIASGVGPVPPSSTGSLTTATEEKPWWDMLPVVLIQYARGLHRG 2154
Query: 1540 HKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVL 1599
HKNLFQALPRLLTLWF+FGSI + GSS NK +K V+ +++ IMRGCLKDLP YQWLTVL
Sbjct: 2155 HKNLFQALPRLLTLWFEFGSIYIQDGSSFNKPMKEVHIRLLGIMRGCLKDLPPYQWLTVL 2214
Query: 1600 PQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAK 1659
QL+SRICHQN E+V+LVK I+TS+LR+YPQQ LW+MAAVSKST+ +RR+AAAEI+Q+AK
Sbjct: 2215 SQLISRICHQNIEVVKLVKCIVTSILREYPQQALWMMAAVSKSTVAARRDAAAEILQSAK 2274
Query: 1660 KGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQ 1719
KGS G+ +N LF QF SLIDHLIKLCFH GQ K+R INISTEFS+LKRMMPLGII+PIQ
Sbjct: 2275 KGSRRGSDSNALFMQFPSLIDHLIKLCFHPGQPKARAINISTEFSSLKRMMPLGIILPIQ 2334
Query: 1720 QSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKR 1779
Q+LTVTLP D N+T+ + FS S+ PTI+GIAD+AEIL+SLQ+PKK+V +GSDGI R
Sbjct: 2335 QALTVTLPSYDTNMTDQSTFRPFSVSEHPTIAGIADDAEILNSLQKPKKVVFIGSDGISR 2394
Query: 1780 PFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPH 1839
PFLCKPKDDLRKDSRMMEF AMINRLLSK PESRRRKLYIRTFAV+PLTEDCGMVEWVP+
Sbjct: 2395 PFLCKPKDDLRKDSRMMEFNAMINRLLSKVPESRRRKLYIRTFAVVPLTEDCGMVEWVPN 2454
Query: 1840 TRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWF 1899
TRGLR ILQDIYI+CGKFDR KTNPQIK+IYDQ QGK+PE EMLK KILPMFPPVFHKWF
Sbjct: 2455 TRGLRQILQDIYITCGKFDRMKTNPQIKKIYDQLQGKMPE-EMLKAKILPMFPPVFHKWF 2513
Query: 1900 LTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD 1959
LTTFSEPAAW RAR AYAHTTAVWSMVGHIVGLGDRHGENIL DSTTGDC+HVDFSCLFD
Sbjct: 2514 LTTFSEPAAWIRARAAYAHTTAVWSMVGHIVGLGDRHGENILLDSTTGDCIHVDFSCLFD 2573
Query: 1960 KGLLLEKPELVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHD 2019
KGLLLEKPE+VPFR TQNM+DGLGITGYEG F++VCEITLSVLRTH+E LM+VLETFIHD
Sbjct: 2574 KGLLLEKPEVVPFRFTQNMVDGLGITGYEGVFVKVCEITLSVLRTHKEALMTVLETFIHD 2633
Query: 2020 PLVEWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEA 2079
PLVEWTKSHKSSGVEV NPHAQRAISNI RLQG VVGV AAPSLPL+VEGQARRLIAEA
Sbjct: 2634 PLVEWTKSHKSSGVEVRNPHAQRAISNITERLQGVVVGVNAAPSLPLSVEGQARRLIAEA 2693
Query: 2080 VSHKNLGKMYIWWMPWF 2096
VSH NLGKMY+WWM WF
Sbjct: 2694 VSHSNLGKMYVWWMAWF 2710
|
Probable serine/threonine kinase. Seems to play a central role in cell-cycle regulation by transmitting DNA damage signals to downstream effectors of cell-cycle progression. May recognize the substrate consensus sequence [ST]-Q and phosphorylate histone variant H2AX to form H2AXS139ph at sites of DNA damage, thereby regulating DNA damage response mechanism. Oryza sativa subsp. indica (taxid: 39946) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9DE14|ATR_XENLA Serine/threonine-protein kinase atr OS=Xenopus laevis GN=atr PE=1 SV=2 | Back alignment and function description |
|---|
Score = 821 bits (2121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 547/1667 (32%), Positives = 868/1667 (52%), Gaps = 200/1667 (11%)
Query: 486 EDLPGFLRNHFVGLLNSIDRKMLHAE-DLSLQKQALKRIEILIEMIG-SHLTTYVPKILV 543
E + +L+ +G+L + +L + + +K AL + L++++G H+++ K++
Sbjct: 1132 EIMADYLQPKLLGILAFFNMHLLSSSIGIEDKKMALNSLVSLMKLMGPKHISSVRVKMMT 1191
Query: 544 LLMHAIN-KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVL 602
L + KE S F+ L + + ++S V AL+P L +
Sbjct: 1192 TLRTGLRYKEEFPGLCCSAWDLFVRCLDQ---AYLGPLLSHVIVALLPLLH-------IQ 1241
Query: 603 LNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMT----LKDQLL 658
+ V + L+++NR ++ +HE LP L E+ K +QE R T L+ +
Sbjct: 1242 PKETVAVFRYLIVENRDAVQDFLHEIYFLPDHPELKEIQKVLQEYRKETTKSTDLQTAMQ 1301
Query: 659 AAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAE 718
++ + HEN++VR + L + L K++ + ++ + V+S L++ LL GC +
Sbjct: 1302 LSIRAIQHENVDVRMHALTSLKETL-YKNQAKLLQYSTDSETVEPVISQLVTVLLIGCQD 1360
Query: 719 ESRTVVGQKLKLVCADCLGALGAVDPAKV---------KGFSCQRFKIECSDDDLIFELI 769
+ +L C +CLG LGA+DP ++ KGF+ F D D +EL+
Sbjct: 1361 -----ANPQARLFCGECLGQLGAIDPGRLDFSPSETQGKGFT---FVSGVEDSDFAYELL 1412
Query: 770 DKHLARAFRAAPDTI-IQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVA 828
+ RAF A D + QDSAA AIQELL I C KE T
Sbjct: 1413 TEQ-TRAFLAYADNVRAQDSAAYAIQELLSIFEC------------------KEGRT--- 1450
Query: 829 SGTMGSDNIHEMNMRGRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVS----TGPIYLP 884
+ GR+ W RF +V+EI+ P L +R++ S +V+ PIYL
Sbjct: 1451 ------------DCPGRRLWRRFPEHVQEILEPHLNTRYK--SSRKAVNWSRVKKPIYLS 1496
Query: 885 SM--SFRRWIYYWIRKLTVHATGSRAS-IFNACRGIVRHDMQTAIYLLPYLVLNAVCHGT 941
+ +F W W L A +F+ C +++HD + IYLLP++++ +
Sbjct: 1497 KLGNNFADWSATWAGYLITKVRHELARRVFSCCSIMMKHDFKVTIYLLPHILVYVLLGCN 1556
Query: 942 EEARLGIAQEILSVLDAAASDHSGASVHGI----SGQSEVCIQAIFTLLDNLGQWVDDVK 997
+E + + EI++VL H + + S S++ Q +F++LD+L QW +
Sbjct: 1557 KEDQQEVYAEIMAVLK-----HEDPLMRRLQDSASDLSQLSTQTVFSMLDHLTQWAREKF 1611
Query: 998 QELALSESLTSKQQGSKSKHPASSMHQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYA 1057
Q AL+ T+ + G++ + P + ++D + Q V+ L IP+ TLA ASFR +AY
Sbjct: 1612 Q--ALNAEKTNPKPGTRGE-PKAVSNED--YGEYQNVTRFLDLIPQDTLAVASFRSKAYT 1666
Query: 1058 RSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKS-LS 1116
R+LM+FES + EK E + FL ++Y+ + EPDG++G++ + K S
Sbjct: 1667 RALMHFESFIMEKKQEIQ-----------EHLGFLQKLYAAMHEPDGVAGVSAIRKKEAS 1715
Query: 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLIS 1176
L++++L ++ G + ++A+Q++P + + V+ +L + L ++T V+G+++
Sbjct: 1716 LKEQILEHESIGLLRDATACYDRAIQLKPEEIIHYHGVVKSMLGLGQLSTVITQVNGILN 1775
Query: 1177 RIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAM 1236
++ V+AAW+L +WDL++EYLS + + ++ + + ++L +
Sbjct: 1776 SRSEWTAELNTYRVEAAWKLSQWDLVEEYLS----------ADRKSTTWSIRLGQLLLSA 1825
Query: 1237 MKKDHFSVSDKIGVSKQVLIAPLAAAGMD--SYTRAYPFIVKLHLLQELEDFHAILVNDS 1294
K + + + V + I PL+AA + SY R Y +IV+LH+L ELE H++ +
Sbjct: 1826 KKGERDMFYETLKVVRAEQIVPLSAASFERGSYQRGYEYIVRLHMLCELE--HSVKM--- 1880
Query: 1295 FLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRR---MVFGASGLGAEVGNC 1351
FL+K + + L A RL+ TQ S AREP+LA RR + +G C
Sbjct: 1881 FLQKPSVEPAVDSLNLPA----RLEMTQNSYRAREPILAVRRALQTINKRPNHADMIGEC 1936
Query: 1352 WLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNK 1411
WLQ A++ R AGH++TA A+L A S +++E+AK LWS A+ LQ K
Sbjct: 1937 WLQSARVARKAGHHQTAYNALLNAGESRLSELNVERAKWLWSKGDVHQALIVLQ-----K 1991
Query: 1412 PVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDI-AKTLLLYSRWIHYTGQKQKE 1470
E+ LS+T E++ I + +LL R + T +
Sbjct: 1992 GAELF---------------------LSSTSAPPEQQLIHGRAMLLVGRLMEETANFESN 2030
Query: 1471 DVITLYSRVRELQPMWEKGYFYMAKYCDDVL--VDARKRQEENSEIGPSEKRWWFYVPDV 1528
V+ Y V L P WE G+FY+AKY D ++ V K +++ I R+ +
Sbjct: 2031 AVMKKYKDVTALLPEWEDGHFYLAKYYDKLMPMVTDNKMEKQGDLI-----RY------I 2079
Query: 1529 LLFYAKGLHRGHKNLFQALPRLLTLWFDFGSIC---QRAGSSSNKDLKNVNGKVMSIMRG 1585
+L + + L G++ ++Q++PR+L+LW DFG+ ++AG + +KN K+ ++
Sbjct: 2080 VLHFGRSLQFGNQYIYQSMPRMLSLWLDFGAKVYEWEKAGRADRLQMKNELMKINKVISD 2139
Query: 1586 CLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIP 1645
L YQ+LT QL+SRICH ++E+ ++ I+ V YPQQ +W+M AVSKS+ P
Sbjct: 2140 HKNQLAPYQFLTAFSQLISRICHSHDEVFAVLMEIVAKVFVAYPQQAMWMMTAVSKSSYP 2199
Query: 1646 SRREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSA 1705
R EI++ A S G T L D L++LC + T++++ F
Sbjct: 2200 MRVNRCKEILEKAIHMKP---SLGKFIGDATRLTDKLLELCNKPVDGNTSTLSMNIHFKM 2256
Query: 1706 LKRMMPLG----IIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILS 1761
LK+++ I++P+Q + TLP A + D F +SG D EIL
Sbjct: 2257 LKKLVEETTFSEILIPLQSVMIPTLP-STAGKRDHADHDPFPGH-WAYLSGFDDAVEILP 2314
Query: 1762 SLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRT 1821
SLQ+PKKI L GSDG +CKPKDDLRKD R+MEF ++IN+ L K ESRRR+L+IRT
Sbjct: 2315 SLQKPKKISLKGSDGKSYIMMCKPKDDLRKDCRLMEFNSLINKCLRKDAESRRRELHIRT 2374
Query: 1822 FAVIPLTEDCGMVEWVPHTRGLRNILQDIY-----ISCGKFDRQKTNPQIKRIYDQFQGK 1876
+AVIPL ++CG++EWV +T G RNIL +Y GK RQ P+ + ++ +
Sbjct: 2375 YAVIPLNDECGIIEWVNNTAGFRNILIKLYKEKGIYMGGKELRQCMLPKSAPLQEKLK-- 2432
Query: 1877 IPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRH 1936
+ K +LP PP+FH+WFL TF +P +W+ +R AY +TAV SMVG+I+GLGDRH
Sbjct: 2433 -----VFKEALLPRHPPLFHEWFLRTFPDPTSWYNSRSAYCRSTAVMSMVGYILGLGDRH 2487
Query: 1937 GENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEGTFLRVCE 1996
GENILFDS TG+CVHVDF+CLF+KG E PE+VPFRLT NM++G+G G EG F R CE
Sbjct: 2488 GENILFDSLTGECVHVDFNCLFNKGETFEVPEIVPFRLTHNMVNGMGPMGTEGLFRRACE 2547
Query: 1997 ITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGV-------EVENPHAQRAISNIEA 2049
+ + ++R RE+LMSVL+ F+HDPLVEW+K + S EV N A+ + +IE
Sbjct: 2548 VIMRLMREQRESLMSVLKPFLHDPLVEWSKPARGSSKGQVNETGEVMNEKAKTHVLDIEQ 2607
Query: 2050 RLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGKMYIWWMPWF 2096
RLQG + LPL++EG LI EA L +MY+ W P+
Sbjct: 2608 RLQGVIKTRNRVKGLPLSIEGHVHYLIQEATDENLLSQMYLGWAPYM 2654
|
Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates BRCA1, CHEK1, MCM2, RAD17, RPA2, SMC1 and p53/TP53, which collectively inhibit DNA replication and mitosis and promote DNA repair, recombination and apoptosis. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX at sites of DNA damage, thereby regulating DNA damage response mechanism. Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q13535|ATR_HUMAN Serine/threonine-protein kinase ATR OS=Homo sapiens GN=ATR PE=1 SV=3 | Back alignment and function description |
|---|
Score = 810 bits (2092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 538/1658 (32%), Positives = 849/1658 (51%), Gaps = 179/1658 (10%)
Query: 486 EDLPGFLRNHFVGLLNSIDRKMLHAE-DLSLQKQALKRIEILIEMIG-SHLTTYVPKILV 543
E + +L+ +G+L + ++L + + +K AL + L++++G H+++ K++
Sbjct: 1117 ELMADYLQPKLLGILAFFNMQLLSSSVGIEDKKMALNSLMSLMKLMGPKHVSSVRVKMMT 1176
Query: 544 LLMHAINKE----SLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNP 599
L + + L C F+ L S ++S V AL+P +
Sbjct: 1177 TLRTGLRFKDDFPELCCRAWDC---FVRCLDHACLGS---LLSHVIVALLPLIH------ 1224
Query: 600 SVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMT----LKD 655
+ + I L+++NR ++ +HE LP L ++ +QE R + L+
Sbjct: 1225 -IQPKETAAIFHYLIIENRDAVQDFLHEIYFLPDHPELKKIKAVLQEYRKETSESTDLQT 1283
Query: 656 QLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRG 715
L ++ + HEN++VR + L + L E + + ++S L++ LL+G
Sbjct: 1284 TLQLSMKAIQHENVDVRIHALTSLKETLYKNQEKLIKYATDSETVE-PIISQLVTVLLKG 1342
Query: 716 CAEESRTVVGQKLKLVCADCLGALGAVDPAKV---------KGFSCQRFKIECSDDDLIF 766
C + + +L+C +CLG LGA+DP ++ K F+ F D +
Sbjct: 1343 CQD-----ANSQARLLCGECLGELGAIDPGRLDFSTTETQGKDFT---FVTGVEDSSFAY 1394
Query: 767 ELIDKHLARAFRA-APDTIIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLT 825
L+ L RA+ A A ++ QDSAA AIQELL I C
Sbjct: 1395 GLL-MELTRAYLAYADNSRAQDSAAYAIQELLSIYDCREM-------------------- 1433
Query: 826 VVASGTMGSDNIHEMNMRGRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVS--TGPIYL 883
E N G + W RF +V+EI+ P L +R++ S S PIYL
Sbjct: 1434 -------------ETNGPGHQLWRRFPEHVREILEPHLNTRYKSSQKSTDWSGVKKPIYL 1480
Query: 884 PSM--SFRRWIYYWIRKLTVHATGSRAS-IFNACRGIVRHDMQTAIYLLPYLVLNAVCHG 940
+ +F W W L AS IF C +++HD + IYLLP++++ +
Sbjct: 1481 SKLGSNFAEWSASWAGYLITKVRHDLASKIFTCCSIMMKHDFKVTIYLLPHILVYVLLGC 1540
Query: 941 TEEARLGIAQEILSVLDAAASDHSGASVHGISGQSEVCIQAIFTLLDNLGQWVDDVKQEL 1000
+E + + EI++VL H+ + S ++ Q +F++LD+L QW Q L
Sbjct: 1541 NQEDQQEVYAEIMAVLKHD-DQHTINTQDIASDLCQLSTQTVFSMLDHLTQWARHKFQAL 1599
Query: 1001 ALSESLTSKQQGSKSKHPASSMHQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSL 1060
+ SK +K S++ + Q V+ L IP+ TLA ASFR +AY R++
Sbjct: 1600 KAEKCPHSKSNRNKVDSMVSTVDYEDY----QSVTRFLDLIPQDTLAVASFRSKAYTRAV 1655
Query: 1061 MYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKS-LSLQD 1119
M+FES + EK + E + FL ++Y+ + EPDG++G++ + K+ SL++
Sbjct: 1656 MHFESFITEKKQNIQ-----------EHLGFLQKLYAAMHEPDGVAGVSAIRKAEPSLKE 1704
Query: 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179
++L ++ G + ++A+Q+EP + + V+ +L + L ++T V+G+ +
Sbjct: 1705 QILEHESLGLLRDATACYDRAIQLEPDQIIHYHGVVKSMLGLGQLSTVITQVNGVHANRS 1764
Query: 1180 QYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKK 1239
++ V+AAW+L +WDL++ YL+ + + ++ + + ++L + K+
Sbjct: 1765 EWTDELNTYRVEAAWKLSQWDLVENYLAADGK----------STTWSVRLGQLLLSAKKR 1814
Query: 1240 DHFSVSDKIGVSKQVLIAPLAAAGMD--SYTRAYPFIVKLHLLQELEDFHAILVNDSFLE 1297
D + D + + + I PL+AA + SY R Y +IV+LH+L ELE H+I +
Sbjct: 1815 DITAFYDSLKLVRAEQIVPLSAASFERGSYQRGYEYIVRLHMLCELE--HSI---KPLFQ 1869
Query: 1298 KSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGAS---GLGAEVGNCWLQ 1354
S P D + NW RL+ TQ S A+EP+LA RR + + VG CWLQ
Sbjct: 1870 HS--PGDSSQEDSL-NWVARLEMTQNSYRAKEPILALRRALLSLNKRPDYNEMVGECWLQ 1926
Query: 1355 YAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVE 1414
A++ R AGH++TA A+L A S +++E+AK LWS A+ LQ K VE
Sbjct: 1927 SARVARKAGHHQTAYNALLNAGESRLAELYVERAKWLWSKGDVHQALIVLQ-----KGVE 1981
Query: 1415 VVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVIT 1474
+ P N P ++ + +LL R++ T + ++
Sbjct: 1982 LC-------------FPENETPPEGKNMLIH-----GRAMLLVGRFMEETANFESNAIMK 2023
Query: 1475 LYSRVRELQPMWEKGYFYMAKYCDDVL--VDARKRQEENSEIGPSEKRWWFYVPDVLLFY 1532
Y V P WE G+FY+AKY D ++ V K +++ I R+ ++L +
Sbjct: 2024 KYKDVTACLPEWEDGHFYLAKYYDKLMPMVTDNKMEKQGDLI-----RY------IVLHF 2072
Query: 1533 AKGLHRGHKNLFQALPRLLTLWFDFGSIC---QRAGSSSNKDLKNVNGKVMSIMRGCLKD 1589
+ L G++ ++Q++PR+LTLW D+G+ ++AG S ++N GK+ ++
Sbjct: 2073 GRSLQYGNQFIYQSMPRMLTLWLDYGTKAYEWEKAGRSDRVQMRNDLGKINKVITEHTNY 2132
Query: 1590 LPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRRE 1649
L YQ+LT QL+SRICH ++E+ ++ II V YPQQ +W+M AVSKS+ P R
Sbjct: 2133 LAPYQFLTAFSQLISRICHSHDEVFVVLMEIIAKVFLAYPQQAMWMMTAVSKSSYPMRVN 2192
Query: 1650 AAAEIIQAAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRM 1709
EI+ K S G T L D L++LC S T+++ST F LK++
Sbjct: 2193 RCKEILN---KAIHMKKSLEKFVGDATRLTDKLLELCNKPVDGSSSTLSMSTHFKMLKKL 2249
Query: 1710 MPLG----IIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQR 1765
+ I++P+Q + TLP S + F I+G D EIL+SLQ+
Sbjct: 2250 VEEATFSEILIPLQSVMIPTLPSILGTHANHASHEPFPGH-WAYIAGFDDMVEILASLQK 2308
Query: 1766 PKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVI 1825
PKKI L GSDG +CKPKDDLRKD R+MEF ++IN+ L K ESRRR+L+IRT+AVI
Sbjct: 2309 PKKISLKGSDGKFYIMMCKPKDDLRKDCRLMEFNSLINKCLRKDAESRRRELHIRTYAVI 2368
Query: 1826 PLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPED-EMLK 1884
PL ++CG++EWV +T GLR IL +Y G + T ++++ + E ++ +
Sbjct: 2369 PLNDECGIIEWVNNTAGLRPILTKLYKEKGVY---MTGKELRQCMLPKSAALSEKLKVFR 2425
Query: 1885 TKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDS 1944
+LP PP+FH+WFL TF +P +W+ +R AY +TAV SMVG+I+GLGDRHGENILFDS
Sbjct: 2426 EFLLPRHPPIFHEWFLRTFPDPTSWYSSRSAYCRSTAVMSMVGYILGLGDRHGENILFDS 2485
Query: 1945 TTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRT 2004
TG+CVHVDF+CLF+KG E PE+VPFRLT NM++G+G G EG F R CE+T+ ++R
Sbjct: 2486 LTGECVHVDFNCLFNKGETFEVPEIVPFRLTHNMVNGMGPMGTEGLFRRACEVTMRLMRD 2545
Query: 2005 HRETLMSVLETFIHDPLVEWTKSHKSSGV-------EVENPHAQRAISNIEARLQGSVVG 2057
RE LMSVL+TF+HDPLVEW+K K EV N A+ + +IE RLQG +
Sbjct: 2546 QREPLMSVLKTFLHDPLVEWSKPVKGHSKAPLNETGEVVNEKAKTHVLDIEQRLQGVIKT 2605
Query: 2058 VGAAPSLPLAVEGQARRLIAEAVSHKNLGKMYIWWMPW 2095
LPL++EG LI EA L +MY+ W P+
Sbjct: 2606 RNRVTGLPLSIEGHVHYLIQEATDENLLCQMYLGWTPY 2643
|
Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates BRCA1, CHEK1, MCM2, RAD17, RPA2, SMC1 and p53/TP53, which collectively inhibit DNA replication and mitosis and promote DNA repair, recombination and apoptosis. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX at sites of DNA damage, thereby regulating DNA damage response mechanism. Required for FANCD2 ubiquitination. Critical for maintenance of fragile site stability and efficient regulation of centrosome duplication. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9JKK8|ATR_MOUSE Serine/threonine-protein kinase ATR OS=Mus musculus GN=Atr PE=1 SV=2 | Back alignment and function description |
|---|
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 527/1561 (33%), Positives = 811/1561 (51%), Gaps = 182/1561 (11%)
Query: 580 VISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTE 639
++S V AL+P + + I L+++NR ++ +HE LP L +
Sbjct: 1211 LLSHVIVALLPLIHMQP-------KETAAIFHYLIIENRDAVQDFLHEIYFLPDHPELEK 1263
Query: 640 VNKAIQEARGPMT----LKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALIN 695
+ +QE R + L+ L ++ + HEN++VR + L + L E +
Sbjct: 1264 IKAVLQEYRKETSETTDLQTTLQLSMKAIQHENVDVRIHALTSLKETLYKNQEKLIKYAT 1323
Query: 696 GEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSC--- 752
+ V+S L++ +L+GC + + +L+C +CLG LGA+DP ++ FS
Sbjct: 1324 DSETVE-PVISQLVTVILKGCQD-----ANSQARLLCGECLGELGAIDPGRL-DFSTTET 1376
Query: 753 --QRFKIECSDDDLIFEL-IDKHLARAFRA-APDTIIQDSAALAIQELLKIAGCEASLDE 808
+ F +DL F + L RA+ A A ++ QDSAA AIQELL I C +
Sbjct: 1377 QGKDFTFVTGVEDLSFAYGLLMELTRAYLAYADNSRAQDSAAYAIQELLSIYDCR-EMQS 1435
Query: 809 NVPASILQVLKDKEHLTVVASGTMGSDNIHEMNMRGRKFWDRFSIYVKEIIAPCLTSRFQ 868
N P G + W RF +V+EI+ P L +R++
Sbjct: 1436 NGP--------------------------------GYQLWKRFPEHVREILEPHLNTRYK 1463
Query: 869 LPSGSDSVS--TGPIYLPSM--SFRRWIYYWIRKLTVHATGSRAS-IFNACRGIVRHDMQ 923
S S T PIYL + +F W W L + AS IF C +++HD +
Sbjct: 1464 SSQKSTDWSGVTKPIYLSKLGNNFAEWSSSWAGYLITKVRDNLASKIFTCCSIMMKHDFK 1523
Query: 924 TAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASDHSGASVHGISGQSEVCIQAIF 983
IYLLP++++ + +E + + EI++VL H+ ++ S ++ Q +F
Sbjct: 1524 VTIYLLPHILVYVLLGCNQEDQQEVYAEIMAVLKHD-EQHAISTQDSASDLCQLSTQTVF 1582
Query: 984 TLLDNLGQWVDDVKQELALSESLTSKQQGSKSKHPASSMHQDQLLTQCQYVSGLLSAIPK 1043
++LD+L QW Q L + +K +G + + Q V+ L IP+
Sbjct: 1583 SVLDHLTQWARHKFQALNAEKLAQNKPKGVSNVN----------FEDYQSVTRFLDLIPQ 1632
Query: 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPD 1103
TLA ASFR +AY R++M+FES + EK + + + FL ++Y+ + EPD
Sbjct: 1633 DTLAVASFRSKAYTRAVMHFESFITEKKQNIQ-----------KHLGFLQKLYAAMHEPD 1681
Query: 1104 GLSGLARLHKS-LSLQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMC 1162
G++G++ + K+ SL++++L ++ G + ++A+Q+EP + + V+ +L +
Sbjct: 1682 GVAGVSAIRKAEPSLKEQILEHESIGLLRDATACYDRAIQLEPDQIIHYHGVVKSMLGLG 1741
Query: 1163 HLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESN 1222
L ++T V+G+ + ++ V+AAW+L +WDL++ YL+ + +
Sbjct: 1742 QLSTVITQVNGVHANRSEWTDELNTYRVEAAWKLSQWDLVENYLAADGK----------S 1791
Query: 1223 ASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMD--SYTRAYPFIVKLHLL 1280
++ + + ++L + K+D + D + + + I PL+AA + SY R Y FIV+LH+L
Sbjct: 1792 TTWSVRLGQLLLSAKKRDTTTFYDTLKLVRAEQIVPLSAASFERGSYQRGYEFIVRLHML 1851
Query: 1281 QELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFG 1340
ELE H++ KS P D ++ NW RL+ TQ S A+EP+LA RR +
Sbjct: 1852 CELE--HSL---KPLFRKS--PGD-SCNEDSLNWGARLEMTQNSYRAKEPILALRRALLS 1903
Query: 1341 AS---GLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRS 1397
+ VG CWLQ A++ R AGH++TA A+L A S +++E+AK LWS
Sbjct: 1904 LNKRPDYNEMVGECWLQSARVARKAGHHQTAYNALLNAGESRLAELYVERAKWLWSKGDV 1963
Query: 1398 DGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLY 1457
A+ LQ K VE+ P N P S ++ + LL
Sbjct: 1964 HQALIVLQ-----KGVELC-------------FPENKSPSESKHMLIH-----GRATLLV 2000
Query: 1458 SRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL--VDARKRQEENSEIG 1515
R++ T + V+ Y V P WE G+FY+AKY D ++ V K +++ I
Sbjct: 2001 GRFMEETANFESNAVMKKYKDVTLFLPEWEDGHFYLAKYYDKLMPMVTDNKMEKQGDLI- 2059
Query: 1516 PSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSIC---QRAGSSSNKDL 1572
R+ ++L + + L G++ ++Q++PR+L+LW DFG+ ++ G S +
Sbjct: 2060 ----RY------IVLHFGRSLQYGNQFIYQSMPRMLSLWLDFGAKAYEWEKGGRSDRLQM 2109
Query: 1573 KNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQG 1632
+N K+ S++ L YQ+LT QL+SRICH ++E+ ++ II V YPQQ
Sbjct: 2110 RNDLAKINSVLTEHTNRLAPYQFLTAFSQLISRICHSHDEVFVVLMEIIAKVFLAYPQQA 2169
Query: 1633 LWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQS 1692
+W+M AVSKS+ P R EI+ K S G T L D L++LC +
Sbjct: 2170 MWMMTAVSKSSYPMRVNRCKEIL---TKAIHMKKSLEKFVGDATRLTDKLLELCNKSVDG 2226
Query: 1693 KSRTINISTEFSALKRMMP----LGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLP 1748
+ T+++ST F LKR++ I++P+Q + TLP + L + D F
Sbjct: 2227 SNSTLSMSTHFKMLKRLVEDPTFSEILIPLQSVMIPTLP---SVLGAHANHDPFPGH-WA 2282
Query: 1749 TISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSK 1808
++G D EILSSLQ+PKKI L GSDG +CKPKDDLRKD R+MEF ++IN+ L K
Sbjct: 2283 YLAGFDDVVEILSSLQKPKKISLKGSDGKFYIMMCKPKDDLRKDCRLMEFNSLINKSLRK 2342
Query: 1809 YPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKR 1868
ESRRR+L+IRT+AVIPL ++CG++EWV +T GLR IL IY G + T +++
Sbjct: 2343 DAESRRRELHIRTYAVIPLNDECGIIEWVNNTAGLRPILTKIYKEKGVY---MTGKELR- 2398
Query: 1869 IYDQFQGKIPEDEMLKTKI-------LPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTA 1921
Q +P+ L K+ LP PPVFH+WFL TF +P +W+ +R AY +TA
Sbjct: 2399 -----QCMLPKSAALSEKLKVFQELLLPRHPPVFHEWFLRTFPDPTSWYSSRSAYCRSTA 2453
Query: 1922 VWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDG 1981
V SMVG+I+GLGDRHGENILFDS TG+CVHVDF+CLF+KG E PE+VPFRLT NM++G
Sbjct: 2454 VMSMVGYILGLGDRHGENILFDSFTGECVHVDFNCLFNKGETFEVPEIVPFRLTHNMVNG 2513
Query: 1982 LGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGV-------E 2034
+G G EG F R CE+TL ++R RE LMSVL+TF+HDPLVE +K K E
Sbjct: 2514 MGPMGTEGLFRRACEVTLRLMRDQREPLMSVLKTFLHDPLVEGSKPVKGHSKAPLNETGE 2573
Query: 2035 VENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGKMYIWWMP 2094
V N A+ + +IE RLQG + LPL++EG LI EA L +MY+ W P
Sbjct: 2574 VVNEKAKTHVLDIEQRLQGVIKTRNRVTGLPLSIEGHVHYLIQEATDENLLCQMYLGWTP 2633
Query: 2095 W 2095
+
Sbjct: 2634 Y 2634
|
Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates BRCA1, CHEK1, MCM2, RAD17, RPA2, SMC1 and p53/TP53, which collectively inhibit DNA replication and mitosis and promote DNA repair, recombination and apoptosis. Phosphorylates Ser-139 of histone variant H2AX/H2AFX at sites of DNA damage, thereby regulating DNA damage response mechanism. Required for FANCD2 ubiquitination. Critical for maintenance of fragile site stability and efficient regulation of centrosome duplication (By similarity). Essential for preventing the occurrence of DNA damage during early embryogenesis. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q02099|RAD3_SCHPO Protein kinase rad3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rad3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 631 bits (1628), Expect = e-179, Method: Compositional matrix adjust.
Identities = 515/1807 (28%), Positives = 851/1807 (47%), Gaps = 181/1807 (10%)
Query: 339 LASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDM 398
+ +P + FA+ E + L++ LP LV+++ N + I EL++ +D+
Sbjct: 712 MGKKPNIASLFAQLMNISEGDFLIRTQ-AYTLPFLVLTK--NKALIVRIAELSQ---SDV 765
Query: 399 VPLIVTWIPKVLAFALHQADERRLLSALEFYCIQTGSDNQEIFAAAL------PALLDEL 452
L +T + K+LA +L D L ++ SD +++ +L ++ L
Sbjct: 766 ATLCLTNMHKILA-SLLTTDHPNLEESVMLLLSLATSDFEKVDLTSLLRSDPISITVELL 824
Query: 453 ICFVDGGDSDEINERLNRVPRVIRKV--STVLTGNEDLPGFLRNHFVGLL---NSIDRKM 507
+ + ++I L +V ++ +V L+ E L F NH +G+L ++I +
Sbjct: 825 QLYQNDVPHEKIENALRKVAMIVSQVVNDEDLSNKELLYDFFNNHILGILAEFSNILNDL 884
Query: 508 LHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIE 567
++ + + + IE ++ + G + +P+IL L A E L+ + I
Sbjct: 885 KGKTSINEKIKTIVGIEKMLSLCGGAVKLGLPQILSNLQSAFQNEHLRFYAIKAWFSLIL 944
Query: 568 QLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHE 627
SS + + L P+LE + V++I + + L+
Sbjct: 945 ATKEPEYSSIAGLSLVILPPLFPYLEPQEAE------LVIQIFDFISSDTHKCLQGLKWA 998
Query: 628 FPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKS 687
P A + K I + +L + + L +EN V Y+ + +L + K
Sbjct: 999 IPTSLDSACFSLKAKEIFCSLQNEDFYSELQSIIKCLTNENEPVCYLGLQKLELFFQAKV 1058
Query: 688 EDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKV 747
+++ +N + ++ VL L+ LL C + + T ++ + A LG LGA+DP++
Sbjct: 1059 DELHDTLNLDISNE--VLDQLLRCLLDCCVKYAST--NMQISYLAAKNLGELGAIDPSRA 1114
Query: 748 KGFSCQRFKI-----ECSDDDL--IFELIDKHLARAFRAAPDTIIQDSAALAIQELLKIA 800
K + + E ++ L I + + L AF DT Q A A+QE LK+
Sbjct: 1115 KAQHIIKETVVLDNFENGEESLKFILDFMQSQLIPAFLVTTDTKAQGFLAYALQEFLKLG 1174
Query: 801 GCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNMRGRKFWDRFSIYVKEIIA 860
G +++ V+ K+ LTVV M ++ K ++
Sbjct: 1175 GFKSA-----------VINKKKGLTVVTEHWMSLPDLS-----------------KRVLI 1206
Query: 861 PCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTVHATGSRA-SIFNACRGIVR 919
P LTS++ L PIY +++ W+ + KL +A A IF C +V+
Sbjct: 1207 PFLTSKYHLTPIPKIDIRYPIYKENVTIHTWMQLFSLKLMEYAHSQNAEKIFGICSKVVK 1266
Query: 920 -HDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASDHSGASVHGISGQSEVC 978
++ +LLP+LVLN + +E + +E V++ D ++ + Q
Sbjct: 1267 DQEVNIPCFLLPFLVLNVILTESELEVNKVIEEFQLVINQPGPD----GLNSVGQQRYTS 1322
Query: 979 -IQAIFTLLDNLGQWVD-DVKQELALSESLTSKQQGSKSKHPASSMHQDQLLTQCQYVSG 1036
+ F ++D L +W+ K+ ++ K+ S A+S + V
Sbjct: 1323 FVDVFFKIVDYLNKWLRMRKKRNWDRRSAIARKENRYMSVEDATSRE-----SSISKVES 1377
Query: 1037 LLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIY 1096
LS P TL S C +AR+L Y+E H+R + + AA +S D L EIY
Sbjct: 1378 FLSRFPSKTLGIVSLNCGFHARALFYWEQHIRNATAPY--AALES------DYRVLQEIY 1429
Query: 1097 SFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLN 1156
+ +D+PD + ++ S +LL ++ SG W + E +Q +P + + +LN
Sbjct: 1430 AGIDDPDEIEAVSLNFHDYSFDQQLLLHENSGTWDSALSCYEIIIQKDPENKKAKIGLLN 1489
Query: 1157 CLLNMCHLQAMVTHVDG-LISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLL 1215
+L H +++V +D +I+ +Y K + G++A+WR D + + LS ++ E
Sbjct: 1490 SMLQSGHYESLVLSLDSFIINDNHEYSKMLNL-GIEASWRSLSIDSLKKCLSKSNLE--- 1545
Query: 1216 CSSSESNASFDMDVAKILQAMMKKDHFS-VSDKIGVSKQVLIAPLAAAGMDSYTRAYPFI 1274
SF+ + I ++KD F+ +++++ +A G S Y +
Sbjct: 1546 --------SFEAKLGSIFYQYLRKDSFAELTERLQPLYVDAATAIANTGAHSAYDCYDIL 1597
Query: 1275 VKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAF 1334
KLH + DF I D + + D+ + RL P + +L+
Sbjct: 1598 SKLH---AINDFSRIAETDGIVSDNL---DIVLRR-------RLSQVAPYGKFKHQILST 1644
Query: 1335 RRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWST 1394
+ + + +L+ A++ R G ++ A AIL+A P +E A+ W
Sbjct: 1645 HLVGYEKFENTKKTAEIYLEIARISRKNGQFQRAFNAILKAMDLDKPLATIEHAQWWWHQ 1704
Query: 1395 RRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTL 1454
+ AI+EL +L N ++V P N L N K
Sbjct: 1705 GQHRKAISELNFSLNNNMFDLVDEHEER--------PKNRKETLGNPLK-------GKVF 1749
Query: 1455 LLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEI 1514
L ++W+ GQ +D+ T Y + E+ E ++Y+ + VL+ EE ++
Sbjct: 1750 LKLTKWLGKAGQLGLKDLETYYHKAVEIYSECENTHYYLGHH--RVLM-----YEEEQKL 1802
Query: 1515 GPSEKRWWFY----VPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAG----- 1565
+E+ F V ++ + + L+ G ++++++P+LLTLW DFG+ R
Sbjct: 1803 PVNEQSERFLSGELVTRIINEFGRSLYYGTNHIYESMPKLLTLWLDFGAEELRLSKDDGE 1862
Query: 1566 --------SSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLV 1617
SS K L+ +N V R +K +P Y +L L Q++SR+CH N ++ +++
Sbjct: 1863 KYFREHIISSRKKSLELMNSNVC---RLSMK-IPQYFFLVALSQMISRVCHPNNKVYKIL 1918
Query: 1618 KHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQA--AKKGSAHGNSANNLFGQF 1675
+HII +V+ YP + LW + A KST R I+ ++K S Q
Sbjct: 1919 EHIIANVVASYPGETLWQLMATIKSTSQKRSLRGKSILNVLHSRKLSMSSKVDIKALSQS 1978
Query: 1676 TSLI-DHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLT 1734
LI + LI LC SKS +++ F L P+ +++P + L +TLP +DAN
Sbjct: 1979 AILITEKLINLCNTRINSKSVKMSLKDHFR-LSFDDPVDLVIPAKSFLDITLPAKDAN-- 2035
Query: 1735 ESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSR 1794
S F + PT+ DE +I++SLQ+P+K+ + G+DG PFLCKPKDDLRKD+R
Sbjct: 2036 -RASHYPFPKTQ-PTLLKFEDEVDIMNSLQKPRKVYVRGTDGNLYPFLCKPKDDLRKDAR 2093
Query: 1795 MMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISC 1854
+MEF +I ++L K E+ RR L IRT+ VIPL E+CG +EWV HTR R IL Y
Sbjct: 2094 LMEFNNLICKILRKDQEANRRNLCIRTYVVIPLNEECGFIEWVNHTRPFREILLKSY--- 2150
Query: 1855 GKFDRQKTNP----QIKRIYDQFQGKIPE-DEMLKTKILPMFPPVFHKWFLTTFSEPAAW 1909
RQK P +IK D F + P ++ + KILP FPPVF++WF+ +F EP W
Sbjct: 2151 ----RQKNIPISYQEIKVDLD-FALRSPNPGDIFEKKILPKFPPVFYEWFVESFPEPNNW 2205
Query: 1910 FRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPEL 1969
+R Y T AV S+VG+++GLGDRHGENILFD TG+ +HVDF+CLFDKGL EKPE
Sbjct: 2206 VTSRQNYCRTLAVMSIVGYVLGLGDRHGENILFDEFTGEAIHVDFNCLFDKGLTFEKPEK 2265
Query: 1970 VPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHK 2029
VPFRLT NM+D +G TGYEG F + EIT+ +LR++++TLMSVLE+F+HDPLVEW + K
Sbjct: 2266 VPFRLTHNMVDAMGPTGYEGGFRKASEITMRLLRSNQDTLMSVLESFLHDPLVEWNR--K 2323
Query: 2030 SSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGKMY 2089
S + N A + I + QG + G ++PL++EGQ + LI AV+ KNL +MY
Sbjct: 2324 KSSSKYPNNEANEVLDIIRKKFQGFMPG----ETIPLSIEGQIQELIKSAVNPKNLVEMY 2379
Query: 2090 IWWMPWF 2096
I W +F
Sbjct: 2380 IGWAAYF 2386
|
Serine/threonine kinase which activates checkpoint signaling upon genotoxic stresses. Involved in G2 arrest following DNA damage where it phosphorylates chk1. It is also involved in the dependence of mitosis on the completion of DNA replication. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q54ER4|ATR1_DICDI Probable serine/threonine-protein kinase atr1 OS=Dictyostelium discoideum GN=atr1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 544 bits (1402), Expect = e-153, Method: Compositional matrix adjust.
Identities = 350/1067 (32%), Positives = 532/1067 (49%), Gaps = 124/1067 (11%)
Query: 1094 EIYSFLDEPDGLSGLARLHK---SLSLQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQR 1150
+IY +D+ DGL GL+ HK S S +++++ + G W + AL+ P ++
Sbjct: 2151 KIYHEMDDIDGLIGLS--HKRVGSPSNEEKIVELESQGFWGDALLYYNTALERSPINMDL 2208
Query: 1151 HSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQG---VQAAWRLGRWDLMDEYLS 1207
LNCL N+ ++++ ++GL K G +Q++WRL WD +DE LS
Sbjct: 2209 RIGALNCLFNLGQHESLLLQIEGLKQEPWLTNKDQSKLGTIKIQSSWRLSHWDKIDETLS 2268
Query: 1208 GADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSY 1267
E +F+ + +IL +++KK + + + L L + +DSY
Sbjct: 2269 QTHE-----------PNFEAYLGRILYSLVKKQEKEFNSNLFQCRSFLAQLLNGSALDSY 2317
Query: 1268 TRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLK--------------------- 1306
R YP++++ H+L+E+E + ++ + +P +
Sbjct: 2318 QRCYPYLIQAHILEEIEQSYKLI------HYNVIPIENVTITNNNNNIGNNNNSNNNNVQ 2371
Query: 1307 ----FSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLA 1362
KL++ W++RLK QPS RE +L+ RR + EV +CW++ K R
Sbjct: 2372 KQQMLKKLLSEWDDRLKIIQPSFKLRESILSVRREILEIGSFSKEVIDCWMKIGKYARHD 2431
Query: 1363 GHYETATRAILEAQASGAPNVH-MEKAKLLWSTRRSDGAIAELQQNLLNK---------- 1411
+E + AIL+ S + +E AKL+W+ S AI L Q L NK
Sbjct: 2432 KKFELSLNAILKPTPSQQDKFYFIEHAKLMWNQGHSFEAINILTQELKNKWNPIINSNNN 2491
Query: 1412 ---PVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQ 1468
+ S SL +P L + I+KT LL +RW G
Sbjct: 2492 SSNNSSSNININNGSKLSLLGLPQEDLFI------------ISKTHLLIARWKQQCGITH 2539
Query: 1469 KEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGP--SEKRWWFYVP 1526
++ YS + WEKG+F++ +Y D +L + KR +NS P + Y
Sbjct: 2540 HSELTEHYSSATAFE--WEKGFFFLGRYYDSLLSNL-KRVNQNSPNSPPLDSVSYVDYTR 2596
Query: 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGC 1586
+++ Y + + GH ++Q L R++ LW + G I K K + + SI +
Sbjct: 2597 NIISSYGQAVILGHSYIYQTLTRIIALWCELGVIFSDFKIPE-KSTKVTSDSLESIKKAM 2655
Query: 1587 LK---DLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKST 1643
K D+PA WL L Q+ SRICH+N + +++ II + ++P+Q +WIM +S+
Sbjct: 2656 SKLELDVPASNWLMFLSQVASRICHKNTDTWLILEKIIIRTMIEFPKQSIWIMMMQYRSS 2715
Query: 1644 IPSRREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSR-TINISTE 1702
R++ A ++ A+K A + + + L L+ + H ++ R +I +S
Sbjct: 2716 SSIRKQRARTCLEKARKTDAIKKNQD----ETILLCAQLLAVSNHPKKANKRYSIKMSEI 2771
Query: 1703 FSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSS 1762
F L M L +I+P+Q SL V+LPP P + LP I D+ +I+ S
Sbjct: 2772 FKKLYEMKDLTVILPLQSSLNVSLPPNGK-----PDKSYPAFGSLPLIGSFEDQIDIMPS 2826
Query: 1763 LQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTF 1822
LQ PKKI + G + FL KP DDLRKD R+MEF M+N+L+ K P R+R L IRT+
Sbjct: 2827 LQGPKKINVNDRQGNRYSFLLKPNDDLRKDQRVMEFNTMVNKLIKKDPACRKRNLKIRTY 2886
Query: 1823 AVIPLTEDCGMVEWVPHTRGLRNILQDIY-----ISCGKFDRQKTNPQIKRIYDQFQGKI 1877
VIP E+ G++EWV +T LR+IL IY I +F++ + K D F+
Sbjct: 2887 TVIPFNEESGIIEWVSNTATLRSILGGIYETMDTIGIDRFNQMVNAKKEKHYLDLFED-- 2944
Query: 1878 PEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHG 1937
FPPV HK F+T F EP+AW AR A+A + A+ SMVG ++GLGDRH
Sbjct: 2945 ---------FNRFFPPVLHKHFITNFPEPSAWLDARDAFARSCAIMSMVGSVLGLGDRHT 2995
Query: 1938 ENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEGTFLRVCEI 1997
ENIL DS TG+CVH+D++CLF KG PE VPFRLT+NM+D G+ G EGTF VCE
Sbjct: 2996 ENILLDSITGECVHIDYNCLFWKGETFTVPERVPFRLTRNMVDVFGVLGVEGTFKTVCEN 3055
Query: 1998 TLSVLRTHRETLMSVLETFIHDP-LVEWTKSHKSSGV-------EVENPHAQRAISNIEA 2049
TL VLR+++E L+ VLE FI+DP L+ + K +++S EVEN A + I A
Sbjct: 3056 TLRVLRSNKEVLLRVLENFIYDPFLILFDKKNQNSNNNNNTHFGEVENDQAVEILKRISA 3115
Query: 2050 RLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGKMYIWWMPWF 2096
LQG + VG L L++EGQ LI EA + K+L MY+ W W+
Sbjct: 3116 TLQG-IPTVG----LQLSIEGQVNHLIQEATNPKHLCNMYVGWCSWY 3157
|
Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]-Q. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9VXG8|ATR_DROME Serine/threonine-protein kinase ATR OS=Drosophila melanogaster GN=mei-41 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 514 bits (1325), Expect = e-144, Method: Compositional matrix adjust.
Identities = 462/1724 (26%), Positives = 774/1724 (44%), Gaps = 274/1724 (15%)
Query: 483 TGNEDLPGFLRNHFVGLLNSIDRKMLHAE-DLSLQKQALKRIEILIEMIGS-HLTTYVPK 540
T N + F+ F+G++ + + + L+++ L + ++ +GS H+T + K
Sbjct: 950 TANAEFANFIAERFLGVITYFESCLSEPSFEKPLKEETLYSLGQIMRFVGSQHVTQFRFK 1009
Query: 541 ILVLL--MHAINKESLQCEGLSVLHFFIE--QLSRVSPSSTKHVISQVFAALIPFLERDK 596
I+ +L +H + + LQ L + H F+ + + PS + ++ A L P L
Sbjct: 1010 IIAMLSFVHTLQEPRLQRICLKIWHIFLHVVNVQELGPS-----LGRIVATLQPLL---A 1061
Query: 597 DNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALT-EVNKAIQEARGPMTLK- 654
DN SV +V + E ++L+N ++L I + L + ++ + K I+ + LK
Sbjct: 1062 DNESV--KQVNDLYEFIILRNASMLGTFITDLYFLDRMENVSPSIQKCIRRHTAHLDLKG 1119
Query: 655 ------------DQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDL 702
DQL + E L VR + L L + + + I E +
Sbjct: 1120 LAEEENQSPPLVDQLRFLQKHITDECLQVRVYALQHLGDLFGRRRPKLNSTILSELPLE- 1178
Query: 703 DVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVD----PAKVKGFSCQRFKIE 758
+L +++ L+ GC + +L++ A CLG LGA+D P+ S Q +
Sbjct: 1179 PMLEQIVNVLMAGCQHDD-----SQLQMASAKCLGELGAIDASYLPSNYNFASPQHLPLN 1233
Query: 759 CSDDDLIFELIDKHLARAFRAAPDTIIQDSAALAIQELLKIAGCEASLDENVPASILQVL 818
DD L L R ++ +T DS +LAIQE L I G +
Sbjct: 1234 ILSDDFAV-LALTSLCRGYQFQQNTKHVDSFSLAIQETLAICG----------------I 1276
Query: 819 KDKEHLTVVASGTMGSDNIHEMNMRGRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVST 878
KE V + W +++++ P L S + +
Sbjct: 1277 SPKEQKKV-------------------QLWQSLPARMRQLMEPMLHSCYTCVHRPSTCLQ 1317
Query: 879 GPIYLPSMS---FRRWIYYWIRKLTVHATGS-RASIFNACRGIVRHDMQTAIYLLPYLVL 934
P++ S + W + W +L + S R + ++ + ++ D PY++L
Sbjct: 1318 QPLFGSHYSHNYYEEWAFLWASRLIDYLPSSGRRHLLSSYKPCIKRDSNMLSTFYPYILL 1377
Query: 935 NAVCHGTEEARLGIAQEILSVLDAAASDHSGASVHGISGQSEVCIQAIFTLLDNLGQWVD 994
+A+ T E R I +E ++VL A ++ S +SV G Q + + +N + +
Sbjct: 1378 HALLECTTEQRNHIQEEFMAVLQA--NEESSSSVRGR--------QELGAIKENAFKQFE 1427
Query: 995 DVKQELA---LSESLTSKQQGSKSKHP--ASSMHQDQL------LTQCQYVSG------- 1036
K L+ +L S ++ S+ P A + + L L + Q + G
Sbjct: 1428 SRKYAAGIKPLASTLVSDRKEDSSRVPRLAGKLCAELLDFLQRWLREWQRIHGRSTGGKP 1487
Query: 1037 -------------LLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGT 1083
L+ IPK+ ++RAS+ C YAR+L Y ES++ E E
Sbjct: 1488 PETIDSNYRKIHEFLNLIPKLLVSRASYNCGEYARALSYLESYLEE--------GEDKSQ 1539
Query: 1084 FEDEDVSFLMEIYSFLDEPDGLSGLARLHK-SLSLQDELLSNKKSGNWAEVFTSCEQAL- 1141
E +FL+E+Y L +PD + G ++ +S+ ++L N+ ++ TS EQ L
Sbjct: 1540 RLLEQFTFLVEVYGSLRDPDSVEGAVQVRSYDMSVTQDILVNRLVERQQDMITSYEQLLS 1599
Query: 1142 ---QMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAA--WRL 1196
QM+P V+ D L + ++ DGL R+ C ++ WRL
Sbjct: 1600 STDQMQPDHVRAMIDAY--LRDTPKTAQLIA--DGLWQRLSDRYSDQCFAECKSELLWRL 1655
Query: 1197 GRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHF-SVSDKIGVSKQVL 1255
G +D M+E S + CS K+ + + + F S+ D G+ + VL
Sbjct: 1656 GSYDEMEELQSNWPAQ---CSQG---------CLKLRRPLTTRIEFDSLLD--GMRESVL 1701
Query: 1256 --IAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDL-KFSKLMA 1312
+ +A SY AY ++KLHL+ EL + +EK D KLM
Sbjct: 1702 EELRSCSAVQQHSYANAYDAVLKLHLVHELH------CSQELVEKLEQDRDEDNQEKLMK 1755
Query: 1313 N----WENRLKYTQPSLWAREPLLAFRRMVFGA------------SGLGAEVGNCWLQYA 1356
N W+ RL+ QP + +E + +FRR + L E+ WL A
Sbjct: 1756 NYFDDWQYRLQIVQPQVRIQESIYSFRRNILAELQRRLTDRNHLLPHLKTELARIWLNSA 1815
Query: 1357 KLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVV 1416
++ R AG + A IL+A + +E+AKLLW ++ D +A N L + + ++
Sbjct: 1816 QINRNAGQLQRAQLYILKAAEYQPSGLFIERAKLLW--QKGDQVMA---MNYLEEQLSIM 1870
Query: 1417 GSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIH--YTGQKQK---ED 1471
S ++ L+ E+R L +++ Y+ + +
Sbjct: 1871 RSGCQGNVKQLA----------------AEQRH----LFFRGKYLQAVYSAESMHLCADA 1910
Query: 1472 VITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLF 1531
V+ + + E + MA++ + +L RQ SE P+ ++ + +V++
Sbjct: 1911 VLKYFQEAIAVHRQSESCHVQMAQFLEKIL---EARQGGKSE--PTGEQDDMLI-NVMVN 1964
Query: 1532 YAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLP 1591
YAK L G ++++Q++PRL++LW D S++ + +K +N ++ C LP
Sbjct: 1965 YAKSLRYGSEHVYQSMPRLISLWLDTTE-----SSTNTEQVKKMN----DLLTNCCTALP 2015
Query: 1592 AYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAA 1651
+ TV Q++SR+CH ++ +++++I ++ YPQQ LW++ +P + A
Sbjct: 2016 TAVFYTVYSQMLSRLCHPVNDVFTVLRNVIIKLVEAYPQQSLWML-------LPHFKSAK 2068
Query: 1652 AEIIQAAK----KGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINIS---TEFS 1704
A I+ K ++ L F SL + L+ L + + RT +S T S
Sbjct: 2069 AHRIKRCKLVLTDSRLQNSTFQKLLQDFNSLTERLMDLT-NKEVTLDRTYKLSDLDTRLS 2127
Query: 1705 ALKRMMPLG-IIMPIQQSLTVTLP-PQDANLTES-------------PSSDIFSASDLPT 1749
L + I++P ++ + TLP D+N +E P I+
Sbjct: 2128 KLCKQPEFSQILLPFEKYMQPTLPLNSDSNSSEGSHLPANQSTVNWFPYQQIY------- 2180
Query: 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKY 1809
ISG + IL S +PKK+ + SDG L KPKDDLR+D+R+MEF ++ R L +
Sbjct: 2181 ISGFQESVLILRSAAKPKKLTIRCSDGKDYDVLVKPKDDLRRDARLMEFNGLVKRYLHQD 2240
Query: 1810 PESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRI 1869
+R+R+L+IRT+AV+P E+CG+VEW+P+ R+I ++Y + + Q++ +
Sbjct: 2241 APARQRRLHIRTYAVLPFNEECGLVEWLPNLASYRSICMNLY---AQRRLVMSTRQLQSL 2297
Query: 1870 YDQFQGKIPED-EMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGH 1928
I E+ +++P PPVF +W F+ P +W+ AR Y T AV SMVG+
Sbjct: 2298 AVPLHESIERKREVFTKQLVPAHPPVFQEWLRQRFATPHSWYEARNTYIRTVAVMSMVGY 2357
Query: 1929 IVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYE 1988
I+GLGDRHGENILF GD VHVDF+CLF++G LL PE+VPFRLT NMI +G G E
Sbjct: 2358 ILGLGDRHGENILFAEGNGDAVHVDFNCLFNQGELLPYPEVVPFRLTHNMIVAMGPLGVE 2417
Query: 1989 GTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIE 2048
G+F + CEITL +L+ +TLMS+L F++D + K ++ + + + I
Sbjct: 2418 GSFRKCCEITLRLLKQESKTLMSILRPFVYDVGAQTRKGAATAKIT-------KDVQRIA 2470
Query: 2049 ARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGKMYIWW 2092
RLQG V A S+PL+ EGQ LI EA NL MYI W
Sbjct: 2471 DRLQGH-VKRQQANSIPLSTEGQVNFLINEATKVDNLASMYIGW 2513
|
Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates various proteins, which collectively inhibits DNA replication and mitosis and promotes DNA repair and recombination. Phosphorylates grp/CHK1. Phosphorylates 'Ser-137' of histone variant H2AX/H2AV at sites of DNA damage, thereby regulating DNA damage response mechanism. Essential for the DNA damage checkpoint in larval imaginal disks and neuroblasts and for the DNA replication checkpoint in the embryo. Has also an essential role during early nuclear divisions in embryos, where it is required to delay mitosis in response to incomplete DNA replication. Also plays an important role during meiosis, where it may monitor double-strand-break repair during meiotic crossing over, to regulate the progression of prophase I, and to enforce metaphase I delay observed at the end of oogenesis. Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q59LR2|ATR_CANAL Serine/threonine-protein kinase MEC1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=MEC1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust.
Identities = 358/1440 (24%), Positives = 656/1440 (45%), Gaps = 221/1440 (15%)
Query: 705 LSTLISSLLRGCAEESRTVVGQ--KLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSD- 761
L+ I+SL+R + + + + CA L +GA+D K + + + I SD
Sbjct: 1057 LTPAITSLVRTILDTAAKFKNKDTTVSTACAKALAIIGALDSNKFQFKTVKSLIIISSDF 1116
Query: 762 ------DDLIFELIDKHLARAFRAAPDTIIQDSAALAIQELLKIAGCEASLDENVPASIL 815
+ +LI+ HL + F A+ D Q AA +Q L + G LDE V
Sbjct: 1117 EDIEENSTFLVDLIENHLLKIFWASNDPHKQLFAAYVMQSFLAVMG----LDERV----- 1167
Query: 816 QVLKDKEHLTVVASGTMGSDNIHEMNMRGRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDS 875
+N + + W++F+ K + P L S++ P
Sbjct: 1168 ------------------------LNTKDNRVWNKFTDVAKSTLTPFLKSKYAAPKPKLD 1203
Query: 876 VSTGPIYLPSMSFRRWIY----YWIRKLTV------HATGSRASIFNACRGIVR--HDMQ 923
P + M + W+ + +++ ++ +R IF + +++ HD+
Sbjct: 1204 NLKFPFFKLGMKYETWLVDVTLFLLKRASIDNGKGNQKAKTRKLIFQSYAVLIQREHDIP 1263
Query: 924 TAIYLLPYLVLNAVCH-GTEEARLGIAQEILSVLDAAASDHSGASVHGISGQSEVCIQAI 982
+LL Y+ L+ V + G E + +E L +L + S Q ++C QAI
Sbjct: 1264 LCEHLLRYVALSHVINEGVPE---DLHKEFLHILKMDSKSTSPDRAE----QLKLCYQAI 1316
Query: 983 FTLLDNLGQWVDDVKQELALSESLTSKQQGSKSKHPASSMHQDQLLTQCQYVSGLLSAIP 1042
F++LD QWV +++ ++ + S+ S +H ++ + S+ P
Sbjct: 1317 FSVLDYFNQWVSNMR---VVTSNSGSELTSSDIRHKMDAVAK-------------FSSFP 1360
Query: 1043 KVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFED-EDVSFLMEIYSFLDE 1101
+ L S C AY R++MY E+ R+ +EKS + + L ++Y+ +D+
Sbjct: 1361 QDLLTTRSAECDAYERTIMYLENCYRDSQ------SEKSFKLSNLNGAATLQDMYAHIDD 1414
Query: 1102 PDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCL--- 1158
D L+G ++ + +L ++L + + S +W+ S E AL SV ++ +L L
Sbjct: 1415 YDALNGTLKMFSTNNLNEKLTTFQYSDSWSLAHESFE-ALGSTKNSVSNNTKLLQSLNEH 1473
Query: 1159 -LNMCHLQAMVTHVDGL-ISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLC 1216
L L + D + IP W + G+ AA G ++++L + G
Sbjct: 1474 GLYNEVLSTLSARTDSNDLKSIPL---DWSLMGLHAAVYKGDSKQLEKWLQVTNSIG--- 1527
Query: 1217 SSSESNASFDMDVAKILQAMMKK--DHFSVS-DKIGVSKQVLIAPLAAAGMDSYTRAYPF 1273
+ + ++AK L + + D F S DK+ ++ L + ++TR
Sbjct: 1528 KPHDMETMINYELAKALSFLFQSRIDMFKGSMDKL---YNIIGCSLVPSVSSNFTRNITL 1584
Query: 1274 IVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLA 1333
+ +LH + ++ +L DS E + DL+ + +++ + +L
Sbjct: 1585 MNQLHAIYDVS--LIVLSQDS--EDTL---DLRIGNVDQDFD-----------TQRNILT 1626
Query: 1334 FRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWS 1393
+ A + L+ + L R + +TR+I++A + ++E A+L W+
Sbjct: 1627 LHNVANTVMKNPAMISKNLLRESSLARKYNRLDISTRSIVQAMSLEDDQANIEFAELQWA 1686
Query: 1394 TRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKT 1453
+ AI L +L + + ++ + AK
Sbjct: 1687 QGKQSEAIKCL------------------------------FDILKDNK-FHDDKSKAKV 1715
Query: 1454 LLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSE 1513
L Y+ W+ + +IT Y++ L + EK F + KY + ++ + N E
Sbjct: 1716 QLQYANWLDESNHLSAHQIITEYNKAFHLNMVDEKCNFDIGKYYNKLM------ESSNDE 1769
Query: 1514 IGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLK 1573
G E + Y + + G +F+ALP++LT+W DF ++ ++ N+ LK
Sbjct: 1770 SGEYEHL-------TVRNYIRAVSVGTTYIFEALPKVLTIWLDFADKSNKSNAAENR-LK 1821
Query: 1574 NVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGL 1633
+++ + + ++P Y W TVL Q++SRI H++E +++K I+ +V +YP+ +
Sbjct: 1822 ----QIIDDLYNAIANVPNYSWYTVLTQILSRIVHEHEPSFKVLKRIVQNVTLEYPKHCV 1877
Query: 1634 WIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGN--------SANNLFGQFTSLIDHLIKL 1685
W + + ++S+ R+ E++ + GN +A NLF + + + I
Sbjct: 1878 WYIFSHARSSDKVRKRRVRELLNQV--CTQDGNDTLPKSTMAAGNLFAKLIKIAELKI-- 1933
Query: 1686 CFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSAS 1745
++ R +++ +F +++PIQ +L + +P ++L FS S
Sbjct: 1934 ---PKTNRKRQMSLLQDFEVDLSEPIDDLVIPIQSNLQIQIP---SHLNSKHKG--FSRS 1985
Query: 1746 DLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRL 1805
+ G D I SLQ P+++ + GSDG + K DD RKD++++EFT M+NR+
Sbjct: 1986 SSISFDGFDDNVNIFFSLQMPRQLTVRGSDGNAYRLMVK-SDDTRKDAKVVEFTTMVNRI 2044
Query: 1806 LSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQ 1865
LS E+R+R L I ++V+PL++ G++E+V + + ++ ++ + + RQ
Sbjct: 2045 LSTSTEARKRGLQIANYSVVPLSDHFGIIEFVMNVQTMKGVISE------QRKRQGIPIN 2098
Query: 1866 IKRIY---DQFQGKIPEDEMLKTKILPMF-------PPVFHKWFLTTFSEPAAWFRARVA 1915
++++ D Q +D K++ F PPV H WF+ FS+P+AW+ AR A
Sbjct: 2099 ERKVFMHIDSLQKAKKKDSKQLDKLVAGFRAIMDRCPPVLHTWFVEQFSDPSAWYMARNA 2158
Query: 1916 YAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLT 1975
+ ++AV SMVG+I+GLGDRH ENIL TG +H+DF CLF+KG L PE+VPFRLT
Sbjct: 2159 FTRSSAVMSMVGYIMGLGDRHCENILIFKNTGAVLHIDFDCLFEKGTTLPTPEIVPFRLT 2218
Query: 1976 QNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEV 2035
QNM+D +GITG +G + CE+T ++LR + + LM++LET I+DPL++W
Sbjct: 2219 QNMVDAMGITGVDGIYRITCEVTGTLLRENEQILMNILETLIYDPLIDW----------- 2267
Query: 2036 ENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGKMYIWWMPW 2095
N + + +S + +++G + LP+ + GQ LI EA S + L +MY W +
Sbjct: 2268 RNHNPREDLSKVRKKIRGL---INEDEGLPMNIHGQVDVLIQEATSLERLSQMYAGWAAY 2324
|
Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]-Q. Recruited to DNA lesions in order to initiates the DNA repair by homologous recombination. Phosphorylates histone H2A to form H2AS128ph (gamma-H2A) at sites of DNA damage, also involved in the regulation of DNA damage response mechanism. Required for cell growth and meiotic recombination. Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2096 | ||||||
| 224078422 | 2740 | predicted protein [Populus trichocarpa] | 0.991 | 0.758 | 0.784 | 0.0 | |
| 359474997 | 2730 | PREDICTED: serine/threonine-protein kina | 0.997 | 0.765 | 0.788 | 0.0 | |
| 255560447 | 2822 | Serine/threonine-protein kinase ATR, put | 0.994 | 0.738 | 0.767 | 0.0 | |
| 356534437 | 2738 | PREDICTED: serine/threonine-protein kina | 0.995 | 0.761 | 0.769 | 0.0 | |
| 449454243 | 2716 | PREDICTED: serine/threonine-protein kina | 0.994 | 0.767 | 0.753 | 0.0 | |
| 449513043 | 2716 | PREDICTED: LOW QUALITY PROTEIN: serine/t | 0.994 | 0.767 | 0.753 | 0.0 | |
| 297801500 | 2708 | hypothetical protein ARALYDRAFT_916145 [ | 0.990 | 0.766 | 0.703 | 0.0 | |
| 18422029 | 2702 | serine/threonine-protein kinase ATR [Ara | 0.990 | 0.768 | 0.704 | 0.0 | |
| 7288126 | 2703 | AtRAD3 [Arabidopsis thaliana] | 0.990 | 0.768 | 0.704 | 0.0 | |
| 10177961 | 2810 | AtRAD3 [Arabidopsis thaliana] | 0.990 | 0.739 | 0.703 | 0.0 |
| >gi|224078422|ref|XP_002305538.1| predicted protein [Populus trichocarpa] gi|222848502|gb|EEE86049.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 3393 bits (8798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1659/2114 (78%), Positives = 1845/2114 (87%), Gaps = 36/2114 (1%)
Query: 2 TESDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRV 61
TE E+LDL L DE +EVR E + S+PVIV+WSGLG+ +FKRL+ LGK+E KVKR
Sbjct: 644 TEHALELLDLGLNDEAEEVRIETITSMPVIVLWSGLGLQAEMFKRLDLLGKEENIKVKRS 703
Query: 62 FPISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHN 121
P + GFLSC G+CS + CKL +++ ++ +T DYL + FWCSKCD ++VHN
Sbjct: 704 IPFTLGFLSCFYGSCSIVDGPPLGECKLFIDINNEKHGKTTDYL-QGFWCSKCDRSIVHN 762
Query: 122 QELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTR 181
++ KI+ P D QS + +S+F L +++F+ LYDESSEEVQ++CVR+IRRILVHG+
Sbjct: 763 HKVHLKIMQPPDFQSARVGLNSNFPQLQSMFFKLLYDESSEEVQVACVRIIRRILVHGSE 822
Query: 182 DVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKL 241
D+L+KT+SEWIKC+EFLLLNK+KA+R+AFCTQI FL+ VLS LFL+ ++ +++NE K
Sbjct: 823 DILIKTKSEWIKCVEFLLLNKKKALREAFCTQISSFLESPVLSCLFLNGDSYNKTNEQKF 882
Query: 242 LDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNA 301
L ++K A +AA+DP I ETLLE +++M+AVD+HSQ FL LILLV+QLD+PHVTVRM+A
Sbjct: 883 LGLMKHALSAAEDPQIFETLLECVSQIMIAVDIHSQLFLSCLILLVDQLDHPHVTVRMSA 942
Query: 302 SRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEEL 361
SRLI KSC+FHLKGG EL++SK V I NELFDYL++R S P MVREFAEA FGVETEEL
Sbjct: 943 SRLIHKSCYFHLKGGFELILSKVVHIRNELFDYLTMRFTSHPKMVREFAEAVFGVETEEL 1002
Query: 362 VKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERR 421
V+KMIP VLPKLVVSQQDN++AV + ELAKCLNTDMVPLIV W+PKVLAFALH+AD++
Sbjct: 1003 VEKMIPIVLPKLVVSQQDNNRAVQTLFELAKCLNTDMVPLIVNWLPKVLAFALHRADKQE 1062
Query: 422 LLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTV 481
LLS L+FY Q GSDNQEIFAAALPALLDEL+CF+DGGDS EIN+RL+RVP +I++++ V
Sbjct: 1063 LLSTLQFYHDQIGSDNQEIFAAALPALLDELVCFLDGGDSVEINQRLSRVPDMIKEIARV 1122
Query: 482 LTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKI 541
LTG EDLPGFLRNHFVGLLN IDRKMLHAEDL LQKQAL+RI++LIEM+GS L TYVPK+
Sbjct: 1123 LTGGEDLPGFLRNHFVGLLNGIDRKMLHAEDLLLQKQALRRIKMLIEMMGSQLGTYVPKL 1182
Query: 542 LVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSV 601
+VLLMHAI+KESLQ EGLSVLHFFIEQL+ SPSSTKHVISQVFAALIPFLER K+NPS
Sbjct: 1183 MVLLMHAIDKESLQNEGLSVLHFFIEQLANKSPSSTKHVISQVFAALIPFLERYKENPST 1242
Query: 602 LLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAV 661
LNKVV ILE+LVLKNR ILKQHIHEFPLLPSI L EVNKAIQEARG MTLKDQL V
Sbjct: 1243 HLNKVVNILEELVLKNRTILKQHIHEFPLLPSIPELMEVNKAIQEARGSMTLKDQLRDVV 1302
Query: 662 DGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESR 721
DGLNHENLNVRYMVVCELSKLL L+ D+T+LI GE +D+D+LS+LI++LLRGCAEESR
Sbjct: 1303 DGLNHENLNVRYMVVCELSKLLNLRRGDITSLITGEVAADMDILSSLITALLRGCAEESR 1362
Query: 722 TVVGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAAP 781
T VGQ+LKLVCADCLGALGAVDPAKVKG S QRFKIECSDDDLIFELI KHLARAFRAAP
Sbjct: 1363 TAVGQRLKLVCADCLGALGAVDPAKVKGISSQRFKIECSDDDLIFELIHKHLARAFRAAP 1422
Query: 782 DTIIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMN 841
DTI+QDSAALAIQELLKIAGCEASLD S+ Q LKDK T +SG MN
Sbjct: 1423 DTIVQDSAALAIQELLKIAGCEASLDGTT--SLSQTLKDKS--TKSSSG---------MN 1469
Query: 842 MRGRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTV 901
RG++ WDRFS YVKEIIAPCLTSRFQLP+ +DS S GPIY PSMSFRRWI+YWI+KLT
Sbjct: 1470 TRGQRLWDRFSNYVKEIIAPCLTSRFQLPNVADSASVGPIYRPSMSFRRWIFYWIKKLTA 1529
Query: 902 HATGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAAS 961
HATGSRASIFNACR +VRHDMQ AIYLLPYLVLNAVCHGTEE R IA+EIL VLDAAAS
Sbjct: 1530 HATGSRASIFNACRALVRHDMQLAIYLLPYLVLNAVCHGTEEVRHSIAEEILCVLDAAAS 1589
Query: 962 DHSGASVHGISGQSEVCIQAIFTLLDNLGQWVDDVKQELALSESL---TSKQQGSKSKHP 1018
D+SGA+V GQSEVCIQA+FTLLDNLGQW+DD +QELALS+S SK+Q SKSK
Sbjct: 1590 DNSGAAV---GGQSEVCIQAVFTLLDNLGQWMDDFEQELALSQSFQSPASKKQASKSKGQ 1646
Query: 1019 AS--SMHQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNP 1076
S S QDQLL QC+YVS LL+AIPK+TLARASFRCQAYARSLMYFESHVR KSG+FNP
Sbjct: 1647 GSISSTDQDQLLVQCKYVSELLTAIPKLTLARASFRCQAYARSLMYFESHVRGKSGAFNP 1706
Query: 1077 AAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTS 1136
AAE+SG FEDEDVS+LMEIYS LDEPDGLSGLA L KSLSLQD+LL NK++GNWAEV TS
Sbjct: 1707 AAERSGIFEDEDVSYLMEIYSCLDEPDGLSGLACLRKSLSLQDQLLINKRAGNWAEVLTS 1766
Query: 1137 CEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196
CEQALQMEP SVQRHSDVLNCLLNMCHLQAMVTHVDGLISR+PQYKKTWCMQGVQAAWRL
Sbjct: 1767 CEQALQMEPCSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRVPQYKKTWCMQGVQAAWRL 1826
Query: 1197 GRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLI 1256
GRWDLMDEY+SGAD +GLLCS SESNASFDMDVAKILQ+MMKKD FSV++KI +SKQ LI
Sbjct: 1827 GRWDLMDEYISGADHDGLLCSGSESNASFDMDVAKILQSMMKKDQFSVAEKIALSKQALI 1886
Query: 1257 APLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWEN 1316
APLAAAGMDSY RAYPFIVKLHLL+ELE FH +LV+DSFL K F L+F+KLM NWE+
Sbjct: 1887 APLAAAGMDSYVRAYPFIVKLHLLRELEAFHTLLVDDSFLVKKFHLGHLEFTKLMENWEH 1946
Query: 1317 RLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQ 1376
RL++TQPSLWAREPLLAFRR+VFGAS LGA VG CWLQYAKLCRLAGHYETA RAILEAQ
Sbjct: 1947 RLRFTQPSLWAREPLLAFRRLVFGASSLGAHVGICWLQYAKLCRLAGHYETANRAILEAQ 2006
Query: 1377 ASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLP 1436
ASGAPNVHMEKAKLLWSTRRSDGAIAELQQ LL+ P +VVG+ A SSITSLSLVPLNP P
Sbjct: 2007 ASGAPNVHMEKAKLLWSTRRSDGAIAELQQTLLHMPEKVVGAAARSSITSLSLVPLNPQP 2066
Query: 1437 VLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496
+TQ +E DIAKTLLLYSRWIHYTGQKQKEDVITLY+RVR+LQP WEKG+FY+A+Y
Sbjct: 2067 AFCDTQASSENLDIAKTLLLYSRWIHYTGQKQKEDVITLYTRVRDLQPKWEKGFFYLARY 2126
Query: 1497 CDDVLVDARKRQEENSEIGP--------------SEKRWWFYVPDVLLFYAKGLHRGHKN 1542
CD+VLVDARKRQE+N E+GP +E+RWW PDVLLFYAKGLHRGHKN
Sbjct: 2127 CDEVLVDARKRQEDNYELGPRLVPLTSTSISPSNTERRWWTSAPDVLLFYAKGLHRGHKN 2186
Query: 1543 LFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQL 1602
LFQALPRLLTLWF+FGSI QR GSSSN++LK V+ KVMSIMRGCLKDLP YQWLTVLPQL
Sbjct: 2187 LFQALPRLLTLWFEFGSIYQRCGSSSNQELKKVHDKVMSIMRGCLKDLPTYQWLTVLPQL 2246
Query: 1603 VSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGS 1662
VSRICHQNE+IV+LVK IITSV++QYPQQGLWIMAAVSKS +PSRREAAA IIQ AKKG
Sbjct: 2247 VSRICHQNEDIVKLVKRIITSVIQQYPQQGLWIMAAVSKSAVPSRREAAAAIIQEAKKGF 2306
Query: 1663 AHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSL 1722
+ GN+ +NLF QF SLIDHLI+LCFH GQSK+RTINISTEFSALKRMMPL IIMPIQQSL
Sbjct: 2307 SQGNNGSNLFVQFASLIDHLIRLCFHPGQSKARTINISTEFSALKRMMPLEIIMPIQQSL 2366
Query: 1723 TVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFL 1782
TV+LP D NLT+ +S IFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGI+ PFL
Sbjct: 2367 TVSLPTYDVNLTDPLTSVIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIEHPFL 2426
Query: 1783 CKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRG 1842
CKPKDDLRKD+RMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRG
Sbjct: 2427 CKPKDDLRKDARMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRG 2486
Query: 1843 LRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTT 1902
LR+ILQDIYI CGKFDRQKTNPQIKRIYDQ GK+PEDEMLK KILP+FPPVFHKWFLTT
Sbjct: 2487 LRHILQDIYIKCGKFDRQKTNPQIKRIYDQCHGKMPEDEMLKNKILPLFPPVFHKWFLTT 2546
Query: 1903 FSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGL 1962
FSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGL
Sbjct: 2547 FSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGL 2606
Query: 1963 LLEKPELVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLV 2022
LEKPELVPFRLTQNMIDGLGITGYEG FLRVCEITLSVLRTHRETLMSVLETFIHDPLV
Sbjct: 2607 QLEKPELVPFRLTQNMIDGLGITGYEGIFLRVCEITLSVLRTHRETLMSVLETFIHDPLV 2666
Query: 2023 EWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSH 2082
EWTKSHKSSGVEV+NPHAQRAI+NIEARLQG VVGVGAAPSLPLAVEGQARRLIAEAVSH
Sbjct: 2667 EWTKSHKSSGVEVQNPHAQRAINNIEARLQGVVVGVGAAPSLPLAVEGQARRLIAEAVSH 2726
Query: 2083 KNLGKMYIWWMPWF 2096
KNLGKMYIWWMPWF
Sbjct: 2727 KNLGKMYIWWMPWF 2740
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359474997|ref|XP_002278409.2| PREDICTED: serine/threonine-protein kinase ATR-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 3382 bits (8770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1669/2118 (78%), Positives = 1866/2118 (88%), Gaps = 27/2118 (1%)
Query: 2 TESDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRV 61
TES E+LDL L DE DEVR EAVIS+PVIV+WSGL VL +VF+RL+ L ++ EKVK++
Sbjct: 617 TESILEVLDLGLHDEADEVRIEAVISMPVIVLWSGLDVLRHVFRRLDFLENEKHEKVKKI 676
Query: 62 FPISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHN 121
P S GFL+CL G C+ + D+ ACKL E++ SQ V+++LE FWC KCD + ++
Sbjct: 677 IPFSLGFLACLYGLCNVVAGLDETACKLFFKSENEKWSQFVEHVLEGFWCPKCDGRIAND 736
Query: 122 QELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTR 181
EL SKI++ D+Q+ ++ D+ L +I+F LYDESSEEVQ++CV VIRRIL+HG
Sbjct: 737 HELRSKILHLPDIQTVEIGLDHDYIHLQSIFFNLLYDESSEEVQVACVGVIRRILLHGVP 796
Query: 182 DVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKL 241
D++LKT+SEW+KC+E LLL+K+KA+R+AFC QI +FL+D+VLS LFLD AS ++ E K
Sbjct: 797 DIVLKTKSEWVKCVENLLLHKKKAVREAFCMQISFFLEDSVLSCLFLDGEASDKTKEQKF 856
Query: 242 LDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNA 301
LD IK A AA+DP + ETLLESTAE+M+AVD+ SQ FLF LILLV+QLDNPH+TVRM A
Sbjct: 857 LDKIKHALAAAEDPQVFETLLESTAEIMIAVDIQSQIFLFSLILLVDQLDNPHLTVRMTA 916
Query: 302 SRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEEL 361
SRLI +SCFFHLKGG EL++SK V I NEL+DYLS R+ASRP MV+EFAE+ GVETE+L
Sbjct: 917 SRLIHRSCFFHLKGGFELILSKVVHIRNELYDYLSTRVASRPKMVQEFAESVIGVETEDL 976
Query: 362 VKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERR 421
VKKM+P VLPKLVV+QQD++ AV + ELAKCL+TDMVPLIV W+PKVLAFALH+AD +
Sbjct: 977 VKKMVPVVLPKLVVTQQDDNLAVVTLQELAKCLDTDMVPLIVNWLPKVLAFALHRADGQE 1036
Query: 422 LLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTV 481
L SAL+FY + TGS+NQEIFAAALPALLDEL+CF+D GD DEI++RL RVP++I++V+ V
Sbjct: 1037 LFSALQFYHVHTGSNNQEIFAAALPALLDELVCFLDVGDLDEISKRLARVPQMIKEVAKV 1096
Query: 482 LTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKI 541
LTG+EDLPGFLRNHFVGLLNSIDRKMLHAEDL+LQKQALKRIE+LI+++GSHL+TYVPK+
Sbjct: 1097 LTGSEDLPGFLRNHFVGLLNSIDRKMLHAEDLALQKQALKRIEMLIKLMGSHLSTYVPKL 1156
Query: 542 LVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSV 601
+VLLMHAI+KESLQ EGLSVLHFFI QL++VSPSSTKHVISQVFAALIPFLER+K+N S+
Sbjct: 1157 MVLLMHAIDKESLQSEGLSVLHFFIGQLAKVSPSSTKHVISQVFAALIPFLEREKENLSI 1216
Query: 602 LLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAV 661
LNKVV+ILE+LV +N+AILKQHI EFP LPSI AL +VN+ IQ+ARG M LKDQLL V
Sbjct: 1217 HLNKVVEILEELVFENKAILKQHIREFPPLPSIPALMKVNEVIQDARGSMNLKDQLLDIV 1276
Query: 662 DGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESR 721
DGL+HENLNVRYMV CELSKLL L+ +D+TALI GEA S +DVLS+LI+SLLRGCAEESR
Sbjct: 1277 DGLDHENLNVRYMVACELSKLLNLRRDDITALITGEAGSHMDVLSSLITSLLRGCAEESR 1336
Query: 722 TVVGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAAP 781
TVVGQ+LKL+CADCLGALGAVDPAKVKG SCQRFKIECSDDDLIFELI KHLARAFRAAP
Sbjct: 1337 TVVGQRLKLICADCLGALGAVDPAKVKGISCQRFKIECSDDDLIFELIHKHLARAFRAAP 1396
Query: 782 DTIIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMN 841
DTI+QDSAALAIQELLKIAGCEASLDEN+ S LQ LKDKE L V SG D EM+
Sbjct: 1397 DTIVQDSAALAIQELLKIAGCEASLDENMALSTLQTLKDKEPLKVSISGVKSIDCCDEMS 1456
Query: 842 MRGRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTV 901
RG++ WDRFS YVKEIIAPCLTSRFQLP+ DS S GPIY PSMSFRRWI++WIRKLTV
Sbjct: 1457 RRGQRLWDRFSNYVKEIIAPCLTSRFQLPNVVDSASAGPIYRPSMSFRRWIFFWIRKLTV 1516
Query: 902 HATGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAAS 961
ATGSRASIFN+CRGIVRHDMQTAIYLLPYLVLNAVCHG++EAR GI EILSVLDAAAS
Sbjct: 1517 LATGSRASIFNSCRGIVRHDMQTAIYLLPYLVLNAVCHGSKEARYGITAEILSVLDAAAS 1576
Query: 962 DHSGASVHGISGQSEVCIQAIFTLLDNLGQWVDDVKQELALSESL---TSKQQGSKSK-- 1016
D+SGA+ H GQSEVCIQA+FTLLDNLGQWVDDV+Q++ALS+S S+QQ SK K
Sbjct: 1577 DNSGAADHESGGQSEVCIQAVFTLLDNLGQWVDDVEQDIALSQSFQSAVSRQQSSKLKDQ 1636
Query: 1017 --HPASSMHQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSF 1074
+P S D LL QC+YVS LL+AIPKVTLA+ASFRCQAYARSLMYFESHVR KSGSF
Sbjct: 1637 NPNPTDS---DLLLIQCKYVSELLAAIPKVTLAKASFRCQAYARSLMYFESHVRGKSGSF 1693
Query: 1075 NPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVF 1134
NPAAEK G FEDED+SFLMEIYS LDEPDGLSGLA L SLSLQD+LL NKK+GNWAEV
Sbjct: 1694 NPAAEKGGFFEDEDISFLMEIYSGLDEPDGLSGLACLRTSLSLQDQLLINKKAGNWAEVL 1753
Query: 1135 TSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAW 1194
TS EQALQMEPTSVQRHSDVLNCLLNMCHLQAMV HVDGLISRIP+YKKTWCMQGVQAAW
Sbjct: 1754 TSSEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVIHVDGLISRIPKYKKTWCMQGVQAAW 1813
Query: 1195 RLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQV 1254
RL RW+LMDEYL GAD+EGLLCSSSESNASFDMDV KILQAMMKKD FSV++KI +SKQ
Sbjct: 1814 RLSRWELMDEYLDGADKEGLLCSSSESNASFDMDVVKILQAMMKKDQFSVAEKIALSKQA 1873
Query: 1255 LIAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANW 1314
LIAPLAAAGMDSYTRAYPF+VKLH+L+ELEDFH +LV++SFLEKSF +DL+F+K+M NW
Sbjct: 1874 LIAPLAAAGMDSYTRAYPFVVKLHMLRELEDFHQLLVDESFLEKSFDLADLRFTKMMENW 1933
Query: 1315 ENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILE 1374
NRL++TQPSLWAREPLLA RR+V GASGLGA+VG+CWLQYAKLCR AGHYETA RAILE
Sbjct: 1934 GNRLRFTQPSLWAREPLLALRRLVLGASGLGAQVGDCWLQYAKLCRSAGHYETANRAILE 1993
Query: 1375 AQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNP 1434
AQASG+PNVHMEKAKLLWSTRRSDGAIAELQQ+LLN PVE+VGS AISSITS SLVP NP
Sbjct: 1994 AQASGSPNVHMEKAKLLWSTRRSDGAIAELQQSLLNMPVEIVGSAAISSITSRSLVPANP 2053
Query: 1435 LPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMA 1494
P+L +TQT NE RDIAKTLLLYSRWIHYTGQKQKEDV++LYSRVRELQP WEKGYFYMA
Sbjct: 2054 PPLLCDTQTSNENRDIAKTLLLYSRWIHYTGQKQKEDVMSLYSRVRELQPRWEKGYFYMA 2113
Query: 1495 KYCDDVLVDARKRQEENSEIGP----------------SEKRWWFYVPDVLLFYAKGLHR 1538
KYCD+VLVDARKRQEEN E P SEK WW Y+PDVLLFYAKGLHR
Sbjct: 2114 KYCDEVLVDARKRQEENFEPCPRIIPSKSAIVASTNLNSEKHWWSYLPDVLLFYAKGLHR 2173
Query: 1539 GHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTV 1598
GHKNLFQALPRLLTLWFDFGS+ QR+GSSSNK+ KN++GKVM IMRGCLKDLP YQWLTV
Sbjct: 2174 GHKNLFQALPRLLTLWFDFGSVYQRSGSSSNKEWKNIHGKVMGIMRGCLKDLPTYQWLTV 2233
Query: 1599 LPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAA 1658
LPQLVSRICHQNEEIVRLVK IITSVLRQYPQQ LWIMAAVSKST+PSRREAAAEIIQAA
Sbjct: 2234 LPQLVSRICHQNEEIVRLVKLIITSVLRQYPQQALWIMAAVSKSTVPSRREAAAEIIQAA 2293
Query: 1659 KKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPI 1718
+KGS+ GNS NNLF QF +LIDHLI+LCFH+GQ K+RTIN+STEFSALKRMMPLGIIMPI
Sbjct: 2294 RKGSSSGNSGNNLFVQFATLIDHLIRLCFHSGQPKARTINLSTEFSALKRMMPLGIIMPI 2353
Query: 1719 QQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIK 1778
QQSLTVTLP + N +S SDIF+ SDLPTISGIADEAEILSSLQRPKKIVLLGSDG++
Sbjct: 2354 QQSLTVTLPAYEMNHGDSLISDIFT-SDLPTISGIADEAEILSSLQRPKKIVLLGSDGVQ 2412
Query: 1779 RPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVP 1838
PFLCKPKDDLRKD+RMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVP
Sbjct: 2413 CPFLCKPKDDLRKDARMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVP 2472
Query: 1839 HTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKW 1898
HTRGLR+ILQDIYISCGKFDRQKTNPQIKRIYDQ QGK+ EDEMLK KILPMFPPVFHKW
Sbjct: 2473 HTRGLRHILQDIYISCGKFDRQKTNPQIKRIYDQCQGKMLEDEMLKNKILPMFPPVFHKW 2532
Query: 1899 FLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLF 1958
FL FSEPAAWFRAR+AY+HTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLF
Sbjct: 2533 FLNNFSEPAAWFRARLAYSHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLF 2592
Query: 1959 DKGLLLEKPELVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIH 2018
DKGL LEKPELVPFRLTQNMIDGLGITGYEG FLRV EITLSVLRTHRETL+S+LETFIH
Sbjct: 2593 DKGLQLEKPELVPFRLTQNMIDGLGITGYEGIFLRVSEITLSVLRTHRETLVSILETFIH 2652
Query: 2019 DPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAE 2078
DPLVEWTKSHKSSGVEV+NPHAQRAISNIEARLQG VVGVGAAPSLPLAVEGQARRLIAE
Sbjct: 2653 DPLVEWTKSHKSSGVEVQNPHAQRAISNIEARLQGIVVGVGAAPSLPLAVEGQARRLIAE 2712
Query: 2079 AVSHKNLGKMYIWWMPWF 2096
AVSHKNLGKMYIWWMPWF
Sbjct: 2713 AVSHKNLGKMYIWWMPWF 2730
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255560447|ref|XP_002521238.1| Serine/threonine-protein kinase ATR, putative [Ricinus communis] gi|223539506|gb|EEF41094.1| Serine/threonine-protein kinase ATR, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 3340 bits (8661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1618/2108 (76%), Positives = 1836/2108 (87%), Gaps = 24/2108 (1%)
Query: 2 TESDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRV 61
TES E+LDL L D +EVR E ++S+PVIV+WSGL VL +FKRLE LG++ ++VK++
Sbjct: 620 TESVMEVLDLGLHDGAEEVRLETIVSMPVIVLWSGLDVLAQMFKRLEFLGREVHDRVKQI 679
Query: 62 FPISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHN 121
P S GF+SCL G CSS+ ++ CKL L++ + SQTVDYLL+ FWCS C+ VV N
Sbjct: 680 IPFSLGFMSCLYGCCSSVDGLERGECKLYLDINNVKHSQTVDYLLQGFWCSICEKGVVPN 739
Query: 122 QELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTR 181
E+ SKI+ D+ S ++ F+ DF L +++F+ LYD + EEVQ+ CVR+I RIL+HGT
Sbjct: 740 HEVYSKIIQLPDIPSGEVGFNCDFIHLQSLFFKLLYDGALEEVQVGCVRIIHRILLHGTS 799
Query: 182 DVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKL 241
++L KTR EWI+CIEFLLLN ++A+R+AFCTQI +FL D+VLS LFLDE++ S+S E
Sbjct: 800 NILTKTRFEWIRCIEFLLLNTKRAVREAFCTQISFFLNDSVLSCLFLDEDSPSKSKEQNF 859
Query: 242 LDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNA 301
LD++K + AA D I+ETLLES A++M+AVD S+ FL LILLV+QLDNPH+TVRMN+
Sbjct: 860 LDILKDSLVAAKDSPIVETLLESIAQIMIAVDFSSELFLSSLILLVDQLDNPHMTVRMNS 919
Query: 302 SRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEEL 361
SRLI+KSCFFHLKGG EL++SKAV I NELFDYL++ LASRP+MV+EFAEA F V T++L
Sbjct: 920 SRLIKKSCFFHLKGGFELILSKAVHIRNELFDYLTMSLASRPVMVQEFAEAIFDVGTDKL 979
Query: 362 VKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERR 421
V+KMIP VLPKLVVS QD D+A + EL K +N+D+VPLIV W+PKVLAFALH+A+ +
Sbjct: 980 VEKMIPIVLPKLVVSHQDKDKAFLALLELVKYVNSDLVPLIVNWLPKVLAFALHRANRQE 1039
Query: 422 LLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTV 481
LLS L+FY QTGSDNQEIFAAALPALLDEL+CF DGG+ EI +RL+RVP +I++++ V
Sbjct: 1040 LLSTLQFYHNQTGSDNQEIFAAALPALLDELVCFQDGGNLVEIRQRLSRVPEMIKEIAKV 1099
Query: 482 LTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKI 541
LTG EDLPGFLRNHFVGLLNSIDRKMLH++D +QKQAL+RI+ILIEM+GS L TYVPK+
Sbjct: 1100 LTGAEDLPGFLRNHFVGLLNSIDRKMLHSQDSLVQKQALERIKILIEMMGSQLNTYVPKL 1159
Query: 542 LVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSV 601
+VLLMHAINKESLQ EGLS+LHFFI QL+ SPSSTKH+ISQV AAL P LE+ K++PS+
Sbjct: 1160 MVLLMHAINKESLQSEGLSLLHFFIMQLANKSPSSTKHIISQVLAALFPILEKYKESPSM 1219
Query: 602 LLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAV 661
LNKVVKILE+LVLKN+ +LKQHI EFP LPSI L EVN+ IQEARG MTLKDQL V
Sbjct: 1220 HLNKVVKILEELVLKNKTVLKQHICEFPPLPSILELMEVNEFIQEARGSMTLKDQLRDVV 1279
Query: 662 DGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESR 721
DGLNHENLNVRYMV CEL+KLL L+ ED+TALI GE +++DVLS+LI+SLLRGCAEESR
Sbjct: 1280 DGLNHENLNVRYMVACELNKLLNLRREDLTALITGEVAANMDVLSSLITSLLRGCAEESR 1339
Query: 722 TVVGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAAP 781
TVVGQ+LKLVCADCLGALGAVDPAKVKG SCQRFKIECSDDDLIFELI KHLARAFRAAP
Sbjct: 1340 TVVGQRLKLVCADCLGALGAVDPAKVKGSSCQRFKIECSDDDLIFELIHKHLARAFRAAP 1399
Query: 782 DTIIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMN 841
DT++QDSAALAIQELLKIAGC ASLDENV AS+ Q LK+K ++N MN
Sbjct: 1400 DTVVQDSAALAIQELLKIAGCGASLDENVAASLSQPLKEK-----------STENSSGMN 1448
Query: 842 MRGRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTV 901
RG++ WDRFS YVKEIIAPCLTSRFQLP+ +DS S GPIY PSMSFRRWI++WI+KLT
Sbjct: 1449 NRGQRLWDRFSNYVKEIIAPCLTSRFQLPTVADSTSAGPIYRPSMSFRRWIFFWIKKLTA 1508
Query: 902 HATGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAAS 961
HATGSRASIF ACRGIVRHDMQ AIYLLPYLVLNAVCHG EEARLGIA+EILSVLDAAAS
Sbjct: 1509 HATGSRASIFTACRGIVRHDMQIAIYLLPYLVLNAVCHGIEEARLGIAEEILSVLDAAAS 1568
Query: 962 DHSGASVHGIS-GQSEVCIQAIFTLLDNLGQWVDDVKQELALSES---LTSKQQGSKSKH 1017
+++GA H IS GQSEVCIQA+FTLLDNLGQWVDD++QELALS+S L SK+Q S+SK
Sbjct: 1569 ENTGAVSHVISGGQSEVCIQAVFTLLDNLGQWVDDIEQELALSQSFQTLASKKQASRSKD 1628
Query: 1018 PAS--SMHQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFN 1075
+S + QDQLL+QC+YVS LL IPK+TLARAS+RCQAYARSLMYFESHVREKSGSFN
Sbjct: 1629 QSSFPNTDQDQLLSQCKYVSELLIVIPKLTLARASYRCQAYARSLMYFESHVREKSGSFN 1688
Query: 1076 PAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFT 1135
PAAE+SG FED+DVSFLMEIYS LDEPDGLSGLA L KSLSLQD+LL NKK GNWAEV T
Sbjct: 1689 PAAERSGMFEDDDVSFLMEIYSCLDEPDGLSGLACLRKSLSLQDQLLINKKGGNWAEVLT 1748
Query: 1136 SCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWR 1195
CEQALQMEPTSV RHSDVLNCLLNMCHLQ MVTHVDGL+SR PQYKKTWCMQGVQAAWR
Sbjct: 1749 FCEQALQMEPTSVHRHSDVLNCLLNMCHLQTMVTHVDGLVSRFPQYKKTWCMQGVQAAWR 1808
Query: 1196 LGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVL 1255
L +WDLM+EYLSGADEEGL+CSSSESNA FDM+VAKI+QAMMKKDHFSV++KI +SKQ L
Sbjct: 1809 LSKWDLMNEYLSGADEEGLVCSSSESNACFDMNVAKIIQAMMKKDHFSVAEKIALSKQAL 1868
Query: 1256 IAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWE 1315
IAPLAAAGMDSY RAYPFIVKLHLL+ELEDFH L + SFLEK F DL F+KLM NWE
Sbjct: 1869 IAPLAAAGMDSYMRAYPFIVKLHLLRELEDFHTFLGDGSFLEKKFHLGDLAFTKLMDNWE 1928
Query: 1316 NRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEA 1375
NRL++TQPSLWAREPLLAFRR+VFGAS LGA+VGNCW QYAKLCRLAGHYETA RAILEA
Sbjct: 1929 NRLRFTQPSLWAREPLLAFRRLVFGASDLGAQVGNCWRQYAKLCRLAGHYETANRAILEA 1988
Query: 1376 QASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPL 1435
QASGAPNVHMEKAKLLWSTRRSDGAIAELQQ LL+ P + VGS A + ITSLSLVPLNP
Sbjct: 1989 QASGAPNVHMEKAKLLWSTRRSDGAIAELQQALLHMPEKAVGSAARTLITSLSLVPLNPQ 2048
Query: 1436 PVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAK 1495
+ Q LNE +DIA TLLLY+RWIHYTGQKQKEDVITLYSRVRE+QP W+KG+FY+AK
Sbjct: 2049 SSPCDAQALNENQDIANTLLLYTRWIHYTGQKQKEDVITLYSRVREMQPKWDKGFFYLAK 2108
Query: 1496 YCDDVLVDARKRQEENSEIG-----PSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRL 1550
YCD+VLVDARKRQ++NSE+G +EK WW++VPDVLLFYAKGLH+GHKNLFQALPRL
Sbjct: 2109 YCDEVLVDARKRQDDNSELGRRAVPNTEKHWWYHVPDVLLFYAKGLHKGHKNLFQALPRL 2168
Query: 1551 LTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQN 1610
LTLWFDFGSI R GSSS++D+K V+GKVMSIMRGCLKDLP YQWLTVLPQLVSR+CHQN
Sbjct: 2169 LTLWFDFGSIYLRCGSSSDEDMKKVHGKVMSIMRGCLKDLPTYQWLTVLPQLVSRVCHQN 2228
Query: 1611 EEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGNSANN 1670
EE+V+LV+ IIT VLRQYPQQ LWIMAAVSKST+PSRREAAA II AKKG + GN+ +N
Sbjct: 2229 EEVVKLVRCIITCVLRQYPQQALWIMAAVSKSTVPSRREAAAAIIHDAKKGFSQGNNGSN 2288
Query: 1671 LFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQD 1730
LF QF SLIDHLIKLCFH GQ+++RTINISTEFS+LKRMMPLGIIMPIQQSL V+LP +
Sbjct: 2289 LFVQFASLIDHLIKLCFHPGQARARTINISTEFSSLKRMMPLGIIMPIQQSLAVSLPTYN 2348
Query: 1731 ANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLR 1790
+LT+S +SD+FSASDLPTISGI+DEAEILSSLQRPKKIVLLGSDGI+RPFLCKPKDDLR
Sbjct: 2349 VSLTDSLTSDVFSASDLPTISGISDEAEILSSLQRPKKIVLLGSDGIERPFLCKPKDDLR 2408
Query: 1791 KDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDI 1850
KD+RMMEF AMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLR+ILQD+
Sbjct: 2409 KDARMMEFNAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRHILQDL 2468
Query: 1851 YISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWF 1910
YI+CGKFDRQKTNPQIKRIYDQ QGK+PEDEMLK KI PMFPPVFHKWFLTTFSEPAAWF
Sbjct: 2469 YITCGKFDRQKTNPQIKRIYDQCQGKMPEDEMLKNKIFPMFPPVFHKWFLTTFSEPAAWF 2528
Query: 1911 RARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELV 1970
RARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGL LEKPELV
Sbjct: 2529 RARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLQLEKPELV 2588
Query: 1971 PFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKS 2030
PFRLTQNMIDGLGITGYEG F+RVCEITLSVLRTHRETLMSVLETFIHDPLVEWTK HKS
Sbjct: 2589 PFRLTQNMIDGLGITGYEGIFIRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKIHKS 2648
Query: 2031 SGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGKM-- 2088
SGVEV+NPHA+RAI+NIEARLQG VVGVGAAPSLPLAVEGQARRLIAEAVSHKNLG+M
Sbjct: 2649 SGVEVQNPHAKRAINNIEARLQGVVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGRMDN 2708
Query: 2089 YIWWMPWF 2096
Y W + +F
Sbjct: 2709 YKWILQFF 2716
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356534437|ref|XP_003535761.1| PREDICTED: serine/threonine-protein kinase ATR-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 3325 bits (8622), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1634/2123 (76%), Positives = 1834/2123 (86%), Gaps = 37/2123 (1%)
Query: 7 EILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISF 66
E+LDL L DE +EVR EA IS+PV+V+WSGL V + VF+ +E L KD EKVK+ P+S
Sbjct: 620 EVLDLGLHDEAEEVRTEAAISIPVMVLWSGLDVSSPVFEIMEYLKKDN-EKVKKFLPLSL 678
Query: 67 GFLSCLSGTCSSIVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHN-QELS 125
G LSCL G S+ D N CKL +NV++ + TVD LL+ F CSKC++N + N E
Sbjct: 679 GLLSCLYGCRRSVSDSHINECKLFVNVKNGRMCWTVDCLLQGFCCSKCNSNFICNLNEQQ 738
Query: 126 SKIVNPSDVQSKDLNFHSDFSF--LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDV 183
+ I++ S + D +F D +F L +++FE L+DESSE+VQ+SCVRVI RIL HG D+
Sbjct: 739 APIIHRSGMHGADADFSLDCTFIQLQSLFFELLFDESSEDVQISCVRVIHRILAHGASDI 798
Query: 184 LLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLD 243
LLKTR EWIKC+EFLL ++ K +R+AFC+QI +F+ D +LSS+F + +S E K LD
Sbjct: 799 LLKTRFEWIKCVEFLLTSRSKELREAFCSQIRFFVDDLILSSIF--SGNADKSKEQKFLD 856
Query: 244 VIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASR 303
IK A T AD P ILETL+E TAE+M+AV + S+ FL LILLV+QLD+ HVTVRMNASR
Sbjct: 857 TIKHAMTVADGPHILETLMECTAEIMVAVSIDSKLFLCSLILLVDQLDSTHVTVRMNASR 916
Query: 304 LIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVK 363
LI KSC+FHLKGG EL++SK + ICNEL+DYLS RLASRP++VREFAEA FGVET+ELVK
Sbjct: 917 LIHKSCYFHLKGGLELILSKDLHICNELYDYLSERLASRPVLVREFAEAVFGVETKELVK 976
Query: 364 KMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLL 423
KMIP VLPKLVVSQ N QAV+ + ELAKCLNTDMVPLIV W+PKVLAFALHQ D+++L+
Sbjct: 977 KMIPFVLPKLVVSQHYNSQAVDTLYELAKCLNTDMVPLIVNWLPKVLAFALHQTDDQQLI 1036
Query: 424 SALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLT 483
SA++FY QTGSD QEIFAAALPALLDEL+CF D GDS+EIN RL RVP++I+ ++ VLT
Sbjct: 1037 SAVQFYHAQTGSDKQEIFAAALPALLDELVCFTDCGDSEEINRRLARVPQMIKGIAKVLT 1096
Query: 484 GNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILV 543
G EDLPGFLRNHFVGLLNSIDRK+LHA+D L++QAL RIE+LI M+GSHL TYVPK++V
Sbjct: 1097 GAEDLPGFLRNHFVGLLNSIDRKILHADDFMLRRQALDRIEMLIRMMGSHLNTYVPKLMV 1156
Query: 544 LLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLL 603
LLM++I+KE LQ EGLSVLHFFI+QL++VSPSS KH+ISQVFA+L+PFLERDK+NPS+ L
Sbjct: 1157 LLMYSIDKEPLQKEGLSVLHFFIKQLAKVSPSSIKHIISQVFASLLPFLERDKENPSIHL 1216
Query: 604 NKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDG 663
+KVV ILE+LVLKNR ILKQHI EFP LP I AL EVNKAI++ARG MTLKDQL VDG
Sbjct: 1217 DKVVTILEELVLKNRVILKQHICEFPPLPCIPALIEVNKAIEDARGTMTLKDQLRDVVDG 1276
Query: 664 LNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTV 723
LNHENLNVRYMVVCEL KLL + +DVTALI EA SDLDVLS+LI+SLLRGCAEESRT
Sbjct: 1277 LNHENLNVRYMVVCELRKLLNSRWKDVTALITAEAGSDLDVLSSLITSLLRGCAEESRTT 1336
Query: 724 VGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAAPDT 783
VGQ+LKLVCADCLGALGAVDPAKVKGFSCQRFKI+CSDDDLIFELI KHLARAFR+APDT
Sbjct: 1337 VGQRLKLVCADCLGALGAVDPAKVKGFSCQRFKIQCSDDDLIFELIHKHLARAFRSAPDT 1396
Query: 784 IIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNMR 843
+IQDSAALAIQELLK AGCEASLDEN + Q KD+++ V+S ++ MN R
Sbjct: 1397 VIQDSAALAIQELLKFAGCEASLDENASTTTSQAQKDEDNHKAVSSKIKSTNGSKGMNNR 1456
Query: 844 GRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTVHA 903
G+K WDRFS YVKEIIAPCLTSRFQLP +DS S GPIY SMSFRRWI++WIRKLT HA
Sbjct: 1457 GQKLWDRFSNYVKEIIAPCLTSRFQLPKVADSTSAGPIYRTSMSFRRWIFFWIRKLTAHA 1516
Query: 904 TGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASDH 963
TGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGT+EAR GI +EILSVLDAAAS++
Sbjct: 1517 TGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTQEARQGITEEILSVLDAAASEN 1576
Query: 964 SGASVHGIS-GQSEVCIQAIFTLLDNLGQWVDDVKQELALSES--LTSKQQGSKSKHPAS 1020
SGASVHG S GQSEVCIQA+FTLLDNLGQWVDDV+Q+LALS S + S+QQ SK S
Sbjct: 1577 SGASVHGFSGGQSEVCIQAVFTLLDNLGQWVDDVEQDLALSSSQPMVSRQQKSKGLSSNS 1636
Query: 1021 SMHQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEK 1080
QDQLL QC+YVS LL AIPKVTLARASFRCQA+ARSLMYFES+VREKSG+FNPAAE+
Sbjct: 1637 LTDQDQLLVQCKYVSELLCAIPKVTLARASFRCQAFARSLMYFESYVREKSGAFNPAAER 1696
Query: 1081 SGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSCEQA 1140
SG FED+DVS LMEIYS LDEPDGLSGL+ L K L LQD LL NKK+GNWA+V TSCEQA
Sbjct: 1697 SGIFEDQDVSHLMEIYSCLDEPDGLSGLSCLSKFLRLQDHLLMNKKAGNWADVLTSCEQA 1756
Query: 1141 LQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200
LQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKK WCMQGVQAAWRLGRWD
Sbjct: 1757 LQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKAWCMQGVQAAWRLGRWD 1816
Query: 1201 LMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLA 1260
LMDEYL GA+E+GL+C SSESNASFD++VAKILQAMMK+DHFSV++KI +SKQ LIAPLA
Sbjct: 1817 LMDEYLGGAEEDGLVCCSSESNASFDLNVAKILQAMMKRDHFSVAEKIALSKQSLIAPLA 1876
Query: 1261 AAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKY 1320
AAGMDSY RAYPF+VKLH L+ELEDFH+IL +DSFLEKSF FSKL+ NW+NRL++
Sbjct: 1877 AAGMDSYMRAYPFVVKLHFLRELEDFHSILGDDSFLEKSFDLDHQAFSKLVDNWDNRLRF 1936
Query: 1321 TQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA 1380
TQ SLWAREPLLAFRR+VFG S LGA+VGNCWLQY+KLCRLAGHYETA RAILEAQ+SGA
Sbjct: 1937 TQSSLWAREPLLAFRRLVFGVSSLGAQVGNCWLQYSKLCRLAGHYETANRAILEAQSSGA 1996
Query: 1381 PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSN 1440
PNVHMEKAKLLWSTRRSDGAIA LQQ+LLN PVEV+GS ISSITSLSL+PLNP P++
Sbjct: 1997 PNVHMEKAKLLWSTRRSDGAIAVLQQSLLNMPVEVLGSKTISSITSLSLLPLNPQPIVCE 2056
Query: 1441 TQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500
+Q +NE RDIAKTLLLYSRW HYTGQKQKEDVI+LY+RVRELQP WEKG+FY+AKYCD+V
Sbjct: 2057 SQAMNENRDIAKTLLLYSRWTHYTGQKQKEDVISLYTRVRELQPKWEKGFFYIAKYCDEV 2116
Query: 1501 -----------LVDARKRQEENSEIGP----------------SEKRWWFYVPDVLLFYA 1533
L DARKRQEENS++GP EK WW VP+VLLFYA
Sbjct: 2117 LGDARKRQEELLGDARKRQEENSKLGPRRVPSATIAVGSSNLNGEKPWWSDVPEVLLFYA 2176
Query: 1534 KGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAY 1593
KGLHRGHKNLFQALPRLLTLWFDFGS+ Q +G SSNKDLK+V+ KVMSI+RGCLK+LP Y
Sbjct: 2177 KGLHRGHKNLFQALPRLLTLWFDFGSMYQSSG-SSNKDLKDVHAKVMSIVRGCLKELPPY 2235
Query: 1594 QWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAE 1653
WLTVLPQLVSRICHQNEEIVRLVK IITSVLRQYPQQGLWIMAAVSKST+PSRREAAAE
Sbjct: 2236 HWLTVLPQLVSRICHQNEEIVRLVKLIITSVLRQYPQQGLWIMAAVSKSTVPSRREAAAE 2295
Query: 1654 IIQAAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLG 1713
IIQAA+KG + G+ N+LF QFT+LIDHLIKLCFHAGQS+++TIN+STEFS+LKRMMPLG
Sbjct: 2296 IIQAARKGFSPGSKENSLFVQFTTLIDHLIKLCFHAGQSRAKTINLSTEFSSLKRMMPLG 2355
Query: 1714 IIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLG 1773
IIMPIQQSLTV LP D NL +S S+IFS++DLPTISGIADEAEILSSLQRPKKI+LLG
Sbjct: 2356 IIMPIQQSLTVNLPTYDGNLGDSRMSNIFSSTDLPTISGIADEAEILSSLQRPKKIILLG 2415
Query: 1774 SDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGM 1833
SDG++ PFLCKPKDDLRKD+RMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGM
Sbjct: 2416 SDGLEHPFLCKPKDDLRKDARMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGM 2475
Query: 1834 VEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPP 1893
VEWVPHTRGLR ILQDIYI+CGKFDRQKTNP IK+IYDQ QGK PEDEMLK KILPMFPP
Sbjct: 2476 VEWVPHTRGLRQILQDIYITCGKFDRQKTNPLIKQIYDQCQGKRPEDEMLKNKILPMFPP 2535
Query: 1894 VFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVD 1953
VFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDST+GDCVHVD
Sbjct: 2536 VFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTSGDCVHVD 2595
Query: 1954 FSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVL 2013
FSCLFDKGL LEKPELVPFRLTQNMIDGLGITGYEG FLRVCEITLSVLRTHRETLMSVL
Sbjct: 2596 FSCLFDKGLQLEKPELVPFRLTQNMIDGLGITGYEGIFLRVCEITLSVLRTHRETLMSVL 2655
Query: 2014 ETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQAR 2073
ETFIHDPLVEWTKSHKSSGVEV+NPHAQRAISNIEARLQG VVGVGAAPSLPLAVEGQAR
Sbjct: 2656 ETFIHDPLVEWTKSHKSSGVEVQNPHAQRAISNIEARLQGVVVGVGAAPSLPLAVEGQAR 2715
Query: 2074 RLIAEAVSHKNLGKMYIWWMPWF 2096
RLIAEAVSHKNLGKMYIWWMPWF
Sbjct: 2716 RLIAEAVSHKNLGKMYIWWMPWF 2738
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449454243|ref|XP_004144865.1| PREDICTED: serine/threonine-protein kinase ATR-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3246 bits (8416), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1595/2116 (75%), Positives = 1813/2116 (85%), Gaps = 32/2116 (1%)
Query: 3 ESDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVF 62
E+D EILDL+L DE DEVR EA IS+PVI +W+G LT +F+RLE L ++ EKVK++
Sbjct: 611 ETDLEILDLSLVDENDEVRTEAAISIPVIALWTGFDRLTPLFRRLEILKEEMHEKVKKII 670
Query: 63 PISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQ 122
P+S GFLSCL G+C S+ + CKL LN D QTV+Y+L+ FWCSKCD V+H+
Sbjct: 671 PVSLGFLSCLYGSCHSV-----SRCKLFLNTNSDRCCQTVNYVLQGFWCSKCDRTVLHDH 725
Query: 123 ELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD 182
+L + I+ SD K +N SDF L++++F+ L+DESSEEVQLSCV +RRILVHG+RD
Sbjct: 726 KLYANIIEQSDFYPK-MNLDSDFVHLVSMFFKLLFDESSEEVQLSCVGTLRRILVHGSRD 784
Query: 183 VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLL 242
VL +T+++W+KC+EFLLLN++K+IR+AFC QI FL+D + S F +E+ S++ EL L
Sbjct: 785 VLHQTKTDWLKCVEFLLLNRKKSIREAFCLQISSFLEDHITSCFFSEEDISNKRKELMFL 844
Query: 243 DVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNAS 302
D IK A + DP IL+T+LES AELM AVD+HS F L+LLV+ LDNP++ VR++AS
Sbjct: 845 DFIKTAMVSTADPQILDTILESVAELMNAVDIHSDFFSLSLLLLVDHLDNPYIAVRLSAS 904
Query: 303 RLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELV 362
R I ++C FH KG ++ SK + + NELFD++S RL + P +V+EFAEA GVETE V
Sbjct: 905 RAIHRACCFHFKGNFNMIFSKVIHLRNELFDHVSSRLVNHPKIVQEFAEAVLGVETEVFV 964
Query: 363 KKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRL 422
KKMIP VLPKL+VS Q+NDQAV + ELAKC++TDMV LIV W+PKVLAF L+QA+ + L
Sbjct: 965 KKMIPVVLPKLIVSHQNNDQAVESLYELAKCVDTDMVTLIVNWLPKVLAFVLYQANGKEL 1024
Query: 423 LSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVL 482
SALEFY QTGS +EIFAAALPALLDEL+CFVDGG+SDE+++RL RVP +I +V+ VL
Sbjct: 1025 CSALEFYHAQTGSTQEEIFAAALPALLDELVCFVDGGNSDEVSKRLARVPEMILQVARVL 1084
Query: 483 TGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKIL 542
TG +DLPGFLRNHFVGLLNS+DRKMLHAED+ LQKQAL+RIE+LI+++GSHL+TYVPK++
Sbjct: 1085 TGGDDLPGFLRNHFVGLLNSLDRKMLHAEDVCLQKQALQRIEMLIKLMGSHLSTYVPKLM 1144
Query: 543 VLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVL 602
VLLMHAI KE LQ EGL VL+ FI+QL+ VSPSS K+VISQVFAAL+PFLERD+ S
Sbjct: 1145 VLLMHAIGKEELQSEGLIVLNSFIQQLAMVSPSSIKYVISQVFAALVPFLERDET--STH 1202
Query: 603 LNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVD 662
L+ VVKILE+LVLKN++ILK HI EFP LP I+ALTEVN+AI E RG MTLKDQL VD
Sbjct: 1203 LDMVVKILEELVLKNKSILKVHIREFPPLPCISALTEVNRAINETRGSMTLKDQLRNVVD 1262
Query: 663 GLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRT 722
GLNHENL VRYMV CEL KLL ++S++VT LI+ EA D+DVLS LISSLLRGCAEESRT
Sbjct: 1263 GLNHENLKVRYMVACELRKLLNMRSKEVTTLISAEADLDMDVLSLLISSLLRGCAEESRT 1322
Query: 723 VVGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAAPD 782
VGQ+LKL+CADC+GALGAVDPAKVK FSC+RFKIECSDDDLIFELI KHLARAF AAPD
Sbjct: 1323 AVGQRLKLICADCIGALGAVDPAKVKSFSCERFKIECSDDDLIFELIHKHLARAFGAAPD 1382
Query: 783 TIIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNM 842
TIIQDSAALAIQELLKIAGC+ASLD+N S LKDKE VAS + SD+ H M++
Sbjct: 1383 TIIQDSAALAIQELLKIAGCKASLDDNTAPSASPSLKDKETSKTVASDS--SDDDHAMSI 1440
Query: 843 RGRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTVH 902
RG++ W RFS YVKEIIAPCLTSRFQLP+ DS IY P MSFRRWIY+WIRKLT H
Sbjct: 1441 RGQRLWGRFSDYVKEIIAPCLTSRFQLPNVVDSAFASSIYRPGMSFRRWIYFWIRKLTAH 1500
Query: 903 ATGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASD 962
ATGSRA IF+ACRGIVRHDMQTA+YLLPYLVL+AVCHGTEEAR GI +EILSVL+AAA++
Sbjct: 1501 ATGSRAGIFHACRGIVRHDMQTAVYLLPYLVLSAVCHGTEEARHGITEEILSVLNAAAAE 1560
Query: 963 HSGASVHG-ISGQSEVCIQAIFTLLDNLGQWVDDVKQELALSESLTS---KQQGSKSKHP 1018
+ A +HG GQS+VCIQA+FTLLDNLGQWVDDV++ L+LS+S S K +KSK
Sbjct: 1561 NGVALIHGNTGGQSDVCIQAVFTLLDNLGQWVDDVERGLSLSQSGQSSSSKHLVAKSKES 1620
Query: 1019 ASSMH--QDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNP 1076
+S++H Q+QLL QC+YVS LL AIPK TLARAS CQAYARSLMYFES+VR KSGSFNP
Sbjct: 1621 SSNVHVDQEQLLVQCRYVSQLLDAIPKTTLARASLSCQAYARSLMYFESYVRGKSGSFNP 1680
Query: 1077 AAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTS 1136
AAE+SG FEDED+S+LMEIYSFLDEPDGLSGLA L KSL LQD+LL NKK+GNWAEV T
Sbjct: 1681 AAERSGIFEDEDISYLMEIYSFLDEPDGLSGLACLRKSLRLQDQLLINKKAGNWAEVLTF 1740
Query: 1137 CEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196
CEQAL MEP SVQRHSDVLNCLLNMCHLQAMVTHVDGLI+RIPQYKKTWCMQGVQAAWRL
Sbjct: 1741 CEQALHMEPNSVQRHSDVLNCLLNMCHLQAMVTHVDGLITRIPQYKKTWCMQGVQAAWRL 1800
Query: 1197 GRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLI 1256
GRWDLMDEYL GADEEGLLCSSSESNASFDMDVAKILQAMMKK+ FSVS+KI +SKQ LI
Sbjct: 1801 GRWDLMDEYLKGADEEGLLCSSSESNASFDMDVAKILQAMMKKNQFSVSEKIALSKQSLI 1860
Query: 1257 APLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWEN 1316
APLAAAGMDSY RAYPF+VKLHLL+ELEDFH +L NDSFLEKSF D +FS+++ NWEN
Sbjct: 1861 APLAAAGMDSYARAYPFVVKLHLLKELEDFHNLLFNDSFLEKSFHVDDQEFSEMIQNWEN 1920
Query: 1317 RLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQ 1376
RLK+TQ SLWAREPLL+FRR+VFGAS LGA+VGNCWLQYAKLCR AGHYETA RAILEAQ
Sbjct: 1921 RLKFTQSSLWAREPLLSFRRLVFGASSLGAQVGNCWLQYAKLCRSAGHYETANRAILEAQ 1980
Query: 1377 ASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLP 1436
AS APNVHMEKAKLLWSTRRSDGAI+ELQQ+LLN PVEV+GS A+SSITSLSLVP+NP P
Sbjct: 1981 ASRAPNVHMEKAKLLWSTRRSDGAISELQQSLLNMPVEVIGSAAMSSITSLSLVPMNPAP 2040
Query: 1437 VLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496
++ +TQTLNE RDIAKTLLLYSRWIH TGQKQKEDVI LYSRV+ELQP WEKGYF+MA+Y
Sbjct: 2041 LICDTQTLNENRDIAKTLLLYSRWIHCTGQKQKEDVINLYSRVKELQPKWEKGYFFMARY 2100
Query: 1497 CDDVLVDARKRQEENSE------------IGP----SEKRWWFYVPDVLLFYAKGLHRGH 1540
CD++L DARKRQE++ E IGP +EK WW YVPDVLLFYAKGLHRGH
Sbjct: 2101 CDELLEDARKRQEDSFEQGSRKVSSSSTAIGPPNLNNEKPWWSYVPDVLLFYAKGLHRGH 2160
Query: 1541 KNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLP 1600
KNLFQALPRLLTLWFDFGSI QR GS SNK+LK+V+GKV+SIMRGCLKDLPAYQWL VLP
Sbjct: 2161 KNLFQALPRLLTLWFDFGSIYQRVGSPSNKELKSVHGKVLSIMRGCLKDLPAYQWLAVLP 2220
Query: 1601 QLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKK 1660
QLVSRICHQNEE VRLVK+II SV+RQYPQQ LWIMAAVSKST+PSRREAA EII +AKK
Sbjct: 2221 QLVSRICHQNEETVRLVKYIIASVVRQYPQQALWIMAAVSKSTVPSRREAAMEIIYSAKK 2280
Query: 1661 GSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQ 1720
+ G NNLF QF SLIDHLIKLCFH GQ +++ INISTEFS LKRMMPL IIMPIQQ
Sbjct: 2281 DFSQGKGGNNLFLQFASLIDHLIKLCFHPGQQRAKNINISTEFSTLKRMMPLEIIMPIQQ 2340
Query: 1721 SLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRP 1780
SL V LP D NLT+SPSSDIFS ++LPTISGIADEAEILSSLQRPKKI+LLGSDGI+RP
Sbjct: 2341 SLVVNLPTYDVNLTDSPSSDIFSGTELPTISGIADEAEILSSLQRPKKIILLGSDGIERP 2400
Query: 1781 FLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHT 1840
FLCKPKDDLRKD+RMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHT
Sbjct: 2401 FLCKPKDDLRKDARMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHT 2460
Query: 1841 RGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFL 1900
RGLR+ILQDIYI+CGKFDRQKTNPQ+KRIYDQ QGKIPE EMLKTKILP+FPPVFH+WFL
Sbjct: 2461 RGLRHILQDIYITCGKFDRQKTNPQVKRIYDQCQGKIPEGEMLKTKILPLFPPVFHRWFL 2520
Query: 1901 TTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDK 1960
TFSEPAAWFRAR+AYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDK
Sbjct: 2521 NTFSEPAAWFRARIAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDK 2580
Query: 1961 GLLLEKPELVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDP 2020
GL LEKPELVPFRLTQNMIDGLGITGYEG FLRVCEITLSVLR+HR+TLMS+LETFIHDP
Sbjct: 2581 GLQLEKPELVPFRLTQNMIDGLGITGYEGIFLRVCEITLSVLRSHRDTLMSILETFIHDP 2640
Query: 2021 LVEWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAV 2080
LVEWTKSHKSSGVEV+NPHAQ AISNIEARL+G VVGVGAAPSLPLAVEGQARRLIAEAV
Sbjct: 2641 LVEWTKSHKSSGVEVQNPHAQLAISNIEARLRGVVVGVGAAPSLPLAVEGQARRLIAEAV 2700
Query: 2081 SHKNLGKMYIWWMPWF 2096
+HKNLGKMYIWWMPWF
Sbjct: 2701 AHKNLGKMYIWWMPWF 2716
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449513043|ref|XP_004164212.1| PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase ATR-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 3244 bits (8412), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1594/2116 (75%), Positives = 1812/2116 (85%), Gaps = 32/2116 (1%)
Query: 3 ESDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVF 62
E+D EILDL+L DE DEVR EA IS+PVI +W+G LT +F+RLE L ++ EKVK++
Sbjct: 611 ETDLEILDLSLVDENDEVRTEAAISIPVIALWTGFDRLTPLFRRLEILKEEMHEKVKKII 670
Query: 63 PISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQ 122
P+S GFLSCL G+C S+ + CKL LN D QTV+Y+L+ FWCSKCD V+H+
Sbjct: 671 PVSLGFLSCLYGSCHSV-----SRCKLFLNTNSDRCCQTVNYVLQGFWCSKCDRTVLHDH 725
Query: 123 ELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD 182
+L + I+ SD K +N SDF L++++F+ L+DESSEEVQLSCV +RRILVHG+RD
Sbjct: 726 KLYANIIEQSDFYPK-MNLDSDFVHLVSMFFKLLFDESSEEVQLSCVGTLRRILVHGSRD 784
Query: 183 VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLL 242
VL +T+++W+KC+EFLLLN++K+IR+AFC QI FL+D + S F +E+ S++ EL L
Sbjct: 785 VLHQTKTDWLKCVEFLLLNRKKSIREAFCLQISSFLEDHITSCFFSEEDISNKRKELMFL 844
Query: 243 DVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNAS 302
D IK A + DP IL+T+LES AELM AVD+HS F L+LLV+ LDNP++ VR++AS
Sbjct: 845 DFIKTAMVSTADPQILDTILESVAELMNAVDIHSDFFSLSLLLLVDHLDNPYIAVRLSAS 904
Query: 303 RLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELV 362
R I ++C FH KG ++ SK + + NELFD++S RL + P +V+EFAEA GVETE V
Sbjct: 905 RAIHRACCFHFKGNFNMIFSKVIHLRNELFDHVSSRLVNHPKIVQEFAEAVLGVETEVFV 964
Query: 363 KKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRL 422
KKMIP VLPKL+VS Q+NDQAV + ELAKC++TDMV LIV W+PKVLAF L+QA+ + L
Sbjct: 965 KKMIPVVLPKLIVSHQNNDQAVESLYELAKCVDTDMVTLIVNWLPKVLAFVLYQANGKEL 1024
Query: 423 LSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVL 482
SALEFY QTGS +EIFAAALPALLDEL+CFVDGG+SDE+++RL RVP +I +V+ VL
Sbjct: 1025 CSALEFYHAQTGSTQEEIFAAALPALLDELVCFVDGGNSDEVSKRLARVPEMILQVARVL 1084
Query: 483 TGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKIL 542
TG +DLPGFLRNHFVGLLNS+DRKMLHAED+ LQKQAL+RIE+LI+++GSHL+TYVPK++
Sbjct: 1085 TGGDDLPGFLRNHFVGLLNSLDRKMLHAEDVCLQKQALQRIEMLIKLMGSHLSTYVPKLM 1144
Query: 543 VLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVL 602
VLLMHAI KE LQ EGL VL+ FI+QL+ VSPSS K+VISQVFAAL+PFLERD+ S
Sbjct: 1145 VLLMHAIGKEELQSEGLIVLNSFIQQLAMVSPSSIKYVISQVFAALVPFLERDET--STH 1202
Query: 603 LNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVD 662
L+ VVKILE+LVLKN++ILK HI EFP LP I+ALTEVN+AI E RG MTLKDQL VD
Sbjct: 1203 LDMVVKILEELVLKNKSILKVHIREFPPLPCISALTEVNRAINETRGSMTLKDQLRNVVD 1262
Query: 663 GLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRT 722
GLNHENL VRYMV CEL KLL ++S++VT LI+ EA D+DVLS LISSLLRGCAEESRT
Sbjct: 1263 GLNHENLKVRYMVACELRKLLNMRSKEVTTLISAEADLDMDVLSLLISSLLRGCAEESRT 1322
Query: 723 VVGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAAPD 782
VGQ+LKL+CADC+GALGAVDPAKVK FSC+RFKIECSDDDLIFELI KHLARAF AAPD
Sbjct: 1323 AVGQRLKLICADCIGALGAVDPAKVKSFSCERFKIECSDDDLIFELIHKHLARAFGAAPD 1382
Query: 783 TIIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNM 842
TIIQDSAALAIQELLKIAGC+ASLD+N S LKDKE VAS + SD+ H M++
Sbjct: 1383 TIIQDSAALAIQELLKIAGCKASLDDNTAPSASPSLKDKETSKTVASDS--SDDDHAMSI 1440
Query: 843 RGRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTVH 902
RG++ W RFS YVKEIIAPCLTSRFQLP+ DS IY P MSFRRWIY+WIRKLT H
Sbjct: 1441 RGQRLWGRFSDYVKEIIAPCLTSRFQLPNVVDSAFASSIYRPGMSFRRWIYFWIRKLTAH 1500
Query: 903 ATGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASD 962
ATGSRA IF+ACRGIVRHDMQTA+YLLPYLVL+AVCHGTEEAR GI +EILSVL+AAA++
Sbjct: 1501 ATGSRAGIFHACRGIVRHDMQTAVYLLPYLVLSAVCHGTEEARHGITEEILSVLNAAAAE 1560
Query: 963 HSGASVHG-ISGQSEVCIQAIFTLLDNLGQWVDDVKQELALSESLTS---KQQGSKSKHP 1018
+ A +HG GQS+VCIQA+FTLLDNLGQWVDDV++ L+LS+S S K +KSK
Sbjct: 1561 NGVALIHGNTGGQSDVCIQAVFTLLDNLGQWVDDVERGLSLSQSGQSSSSKHLVAKSKES 1620
Query: 1019 ASSMH--QDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNP 1076
+S++H Q+QLL QC+YVS LL AIPK TLARAS CQAYARSLMYFES+VR KSGSFNP
Sbjct: 1621 SSNVHVDQEQLLVQCRYVSQLLDAIPKTTLARASLSCQAYARSLMYFESYVRGKSGSFNP 1680
Query: 1077 AAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTS 1136
AAE+SG FEDED+S+LMEIYSFLDEPDGLSGLA L KSL LQD+LL NKK+GNWAEV T
Sbjct: 1681 AAERSGIFEDEDISYLMEIYSFLDEPDGLSGLACLRKSLRLQDQLLINKKAGNWAEVLTF 1740
Query: 1137 CEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196
CEQAL MEP SVQRHSDVLNCLLNMCHLQAMVTHVDGLI+RIPQYKKTWCMQGVQAAWRL
Sbjct: 1741 CEQALHMEPNSVQRHSDVLNCLLNMCHLQAMVTHVDGLITRIPQYKKTWCMQGVQAAWRL 1800
Query: 1197 GRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLI 1256
GRWDLMDEYL GADEEGLLCSSSESNASFDMDVAKILQAMMKK+ FSVS+KI +SKQ LI
Sbjct: 1801 GRWDLMDEYLKGADEEGLLCSSSESNASFDMDVAKILQAMMKKNQFSVSEKIALSKQSLI 1860
Query: 1257 APLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWEN 1316
APLAAAGMDSY RAYPF+VKLHLL+ELEDFH +L NDSFLEKSF D +FS+++ NWEN
Sbjct: 1861 APLAAAGMDSYARAYPFVVKLHLLKELEDFHNLLFNDSFLEKSFHVDDQEFSEMIQNWEN 1920
Query: 1317 RLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQ 1376
RLK+TQ SLWAREPLL+FRR+VFGAS LGA+VGNCWLQYAKLCR AGHYETA RAILEAQ
Sbjct: 1921 RLKFTQSSLWAREPLLSFRRLVFGASSLGAQVGNCWLQYAKLCRSAGHYETANRAILEAQ 1980
Query: 1377 ASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLP 1436
AS APNVHMEKAKLLWSTRRSDGAI+ELQQ+LLN PVEV+GS A+SSITSLSLVP+NP P
Sbjct: 1981 ASRAPNVHMEKAKLLWSTRRSDGAISELQQSLLNMPVEVIGSAAMSSITSLSLVPMNPAP 2040
Query: 1437 VLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496
++ +TQTLNE RDIAKTLLLYSRWIH TGQKQKEDVI LYSRV+ELQP WEKGYF+MA+Y
Sbjct: 2041 LICDTQTLNENRDIAKTLLLYSRWIHCTGQKQKEDVINLYSRVKELQPKWEKGYFFMARY 2100
Query: 1497 CDDVLVDARKRQEENSE------------IGP----SEKRWWFYVPDVLLFYAKGLHRGH 1540
CD++L DARKRQE++ E IGP +EK WW YVPDVLLFYAKGLHRGH
Sbjct: 2101 CDELLEDARKRQEDSFEQGSRKVSSSSTAIGPPNLNNEKPWWSYVPDVLLFYAKGLHRGH 2160
Query: 1541 KNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLP 1600
KNLFQALPRLLTLWFDFGSI QR GS SNK+LK+V+GKV+SIMRGCLKDLPAYQWL VLP
Sbjct: 2161 KNLFQALPRLLTLWFDFGSIYQRVGSPSNKELKSVHGKVLSIMRGCLKDLPAYQWLAVLP 2220
Query: 1601 QLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKK 1660
QLVSRICHQNEE VRLVK+II SV+RQYPQQ LWIMAAV KST+PSRREAA EII +AKK
Sbjct: 2221 QLVSRICHQNEETVRLVKYIIASVVRQYPQQALWIMAAVXKSTVPSRREAAMEIIYSAKK 2280
Query: 1661 GSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQ 1720
+ G NNLF QF SLIDHLIKLCFH GQ +++ INISTEFS LKRMMPL IIMPIQQ
Sbjct: 2281 XFSQGKGGNNLFLQFASLIDHLIKLCFHPGQQRAKNINISTEFSTLKRMMPLEIIMPIQQ 2340
Query: 1721 SLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRP 1780
SL V LP D NLT+SPSSDIFS ++LPTISGIADEAEILSSLQRPKKI+LLGSDGI+RP
Sbjct: 2341 SLVVNLPTYDVNLTDSPSSDIFSGTELPTISGIADEAEILSSLQRPKKIILLGSDGIERP 2400
Query: 1781 FLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHT 1840
FLCKPKDDLRKD+RMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHT
Sbjct: 2401 FLCKPKDDLRKDARMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHT 2460
Query: 1841 RGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFL 1900
RGLR+ILQDIYI+CGKFDRQKTNPQ+KRIYDQ QGKIPE EMLKTKILP+FPPVFH+WFL
Sbjct: 2461 RGLRHILQDIYITCGKFDRQKTNPQVKRIYDQCQGKIPEGEMLKTKILPLFPPVFHRWFL 2520
Query: 1901 TTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDK 1960
TFSEPAAWFRAR+AYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDK
Sbjct: 2521 NTFSEPAAWFRARIAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDK 2580
Query: 1961 GLLLEKPELVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDP 2020
GL LEKPELVPFRLTQNMIDGLGITGYEG FLRVCEITLSVLR+HR+TLMS+LETFIHDP
Sbjct: 2581 GLQLEKPELVPFRLTQNMIDGLGITGYEGIFLRVCEITLSVLRSHRDTLMSILETFIHDP 2640
Query: 2021 LVEWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAV 2080
LVEWTKSHKSSGVEV+NPHAQ AISNIEARL+G VVGVGAAPSLPLAVEGQARRLIAEAV
Sbjct: 2641 LVEWTKSHKSSGVEVQNPHAQLAISNIEARLRGVVVGVGAAPSLPLAVEGQARRLIAEAV 2700
Query: 2081 SHKNLGKMYIWWMPWF 2096
+HKNLGKMYIWWMPWF
Sbjct: 2701 AHKNLGKMYIWWMPWF 2716
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297801500|ref|XP_002868634.1| hypothetical protein ARALYDRAFT_916145 [Arabidopsis lyrata subsp. lyrata] gi|297314470|gb|EFH44893.1| hypothetical protein ARALYDRAFT_916145 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2999 bits (7774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1486/2112 (70%), Positives = 1739/2112 (82%), Gaps = 35/2112 (1%)
Query: 4 SDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFP 63
SD +I +L D+F++V+A A I +P+ V++SGL L ++F +LE L +++ VK+ P
Sbjct: 613 SDFDIFSWSLSDDFEQVQAVAAIYMPLKVLFSGLRALLHMFPKLEHLLEEKQLMVKKTIP 672
Query: 64 ISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQE 123
S GFLSCL G SS +K AC L L+ ED +T++ LL+ F CSKCD + E
Sbjct: 673 QSLGFLSCLYG--SSTTGSEKTACHLFLH-EDLKKDETLNSLLQGFRCSKCDKFIESEDE 729
Query: 124 LSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDV 183
+I+ ++ +++ H D+ L ++YF LYDESSEE QL+CV VIRRIL H D+
Sbjct: 730 KHFRIIETPEMVRLEMDHHRDYFNLQSLYFNLLYDESSEETQLACVEVIRRILGHTAPDI 789
Query: 184 LLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLD 243
L++TRS+WI+C+E+LL++ +R+AFC Q+G F+Q ++S LFL E+A+ +S E +
Sbjct: 790 LVRTRSQWIRCLEYLLVHVNTGVREAFCAQVGIFVQHPIVSCLFLGEDATEKSCERNFFN 849
Query: 244 VIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASR 303
+I+ + A D L+++TLLE+ AE+M+AVDV S+ FLF L LL++QLD+P++ VR+NASR
Sbjct: 850 LIEHSLATAKDLLVIQTLLETIAEVMVAVDVTSELFLFCLFLLIDQLDHPNLIVRINASR 909
Query: 304 LIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVK 363
LI +SC+ H+KGG L+S+A I NELFD LSVRL +RP +VREFAEA GVETEELV+
Sbjct: 910 LINRSCYIHVKGGFATLLSRAGHIKNELFDNLSVRLTNRPNVVREFAEAVLGVETEELVR 969
Query: 364 KMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLL 423
KM+P VLPKL+V Q+N QA N +NELAK L+TD+VPLIV W+P+VLAFAL+Q +++ +L
Sbjct: 970 KMVPVVLPKLLVYWQENAQAANTLNELAKLLDTDVVPLIVNWLPRVLAFALNQKEDKNML 1029
Query: 424 SALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLT 483
S L+ Y Q GSDN+EIFAAALPALLDELICFVD D+ E + RL R+P I+K+S VLT
Sbjct: 1030 SVLQLYHSQIGSDNKEIFAAALPALLDELICFVDIADTPETDRRLQRLPDAIKKISKVLT 1089
Query: 484 GNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILV 543
EDLPGFL+NHFVGLLNSIDRKMLHA+D+ LQKQALKRI++LIEM+G +L+TYVPK++V
Sbjct: 1090 NAEDLPGFLQNHFVGLLNSIDRKMLHADDIFLQKQALKRIKLLIEMMGHYLSTYVPKLMV 1149
Query: 544 LLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLL 603
LLMHAI+K++LQ EGL VLHFF +L+ VSPSS K+VISQVFAALIPFLER+KD P V L
Sbjct: 1150 LLMHAIDKDALQSEGLLVLHFFTRKLADVSPSSIKYVISQVFAALIPFLEREKDGPHVYL 1209
Query: 604 NKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDG 663
++VVKILE+LVLKNR I+KQHI EFPLLPSI +L ++N AIQEARG M+LKDQL V+G
Sbjct: 1210 DEVVKILEELVLKNRDIVKQHICEFPLLPSIPSLGKLNNAIQEARGLMSLKDQLRDIVNG 1269
Query: 664 LNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTV 723
+ HENLNVRYMV CELSKLL ++EDV ALI GE SD+++LS+LI+ LL+GCAEESRT
Sbjct: 1270 MKHENLNVRYMVACELSKLLYHRNEDVAALIAGELVSDMEILSSLITYLLQGCAEESRTT 1329
Query: 724 VGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAAPDT 783
VGQ+LKLVCADCLGA+GA+DPAKV+ SC RFKI+CSDDDLIFELI KHLARAFRAA DT
Sbjct: 1330 VGQRLKLVCADCLGAIGAIDPAKVRVASCSRFKIQCSDDDLIFELIHKHLARAFRAAQDT 1389
Query: 784 IIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNMR 843
IIQDSAALAIQELLKIAGCE SL NV VL +EH+ V SG+ +E+ R
Sbjct: 1390 IIQDSAALAIQELLKIAGCEPSLAGNV-----VVLTPQEHVQVNVSGSRRCGGNNEVKDR 1444
Query: 844 GRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTVHA 903
G+K WDRFS YVKE+IAPCLTSRFQLP+ SD S GPIY P MSFRRW+ YWIRKLT A
Sbjct: 1445 GQKLWDRFSNYVKELIAPCLTSRFQLPNVSDPGSAGPIYRPCMSFRRWLSYWIRKLTALA 1504
Query: 904 TGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASDH 963
TGSR SIF ACRGIVRHDMQTA YLLPYLVL+ VCHGTE ARL I++EILSVLDAAAS++
Sbjct: 1505 TGSRVSIFAACRGIVRHDMQTATYLLPYLVLDVVCHGTEAARLSISEEILSVLDAAASEN 1564
Query: 964 SGASVHGIS-GQSEVCIQAIFTLLDNLGQWVDDVKQELALSESLTS---KQQGSKSKHPA 1019
SG +++ GQSEVC+QA+FTLLDNLGQWVDDVKQ +ALS S+ S +Q KSK
Sbjct: 1565 SGVTINSFGVGQSEVCVQAVFTLLDNLGQWVDDVKQGVALSSSMQSSGGRQVAPKSKDQV 1624
Query: 1020 S--SMHQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPA 1077
S + QD LL QC+YV LL A+PKVTLARASFRCQAYARSLMY ESHVR KSGS NPA
Sbjct: 1625 STATTEQDHLLVQCKYVLELLLAVPKVTLARASFRCQAYARSLMYLESHVRGKSGSLNPA 1684
Query: 1078 AEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSC 1137
AEK+G FE DVS LM IYS LDEPDGLSG A L KSL+LQD+LL +KKSGNWAEVFT+C
Sbjct: 1685 AEKTGIFESADVSSLMGIYSCLDEPDGLSGFASLSKSLNLQDQLLIDKKSGNWAEVFTAC 1744
Query: 1138 EQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197
EQALQMEPTSVQRHSDVLNCLLNMCH Q MVTHVDGLISR+P+YKKTWC QGVQAAWRLG
Sbjct: 1745 EQALQMEPTSVQRHSDVLNCLLNMCHHQTMVTHVDGLISRVPEYKKTWCTQGVQAAWRLG 1804
Query: 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIA 1257
+WDLMDEYL GADEEGLL SSS+SNASFD DVAKILQAMMKKD +SV+++I +SKQ LIA
Sbjct: 1805 KWDLMDEYLDGADEEGLLFSSSDSNASFDRDVAKILQAMMKKDQYSVAERIAISKQALIA 1864
Query: 1258 PLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENR 1317
PLAAAGMDSYTRAYPF+VKLHLL+ELEDF A+L DS+LEKSF SD FSK + NWENR
Sbjct: 1865 PLAAAGMDSYTRAYPFVVKLHLLRELEDFQAVLNGDSYLEKSFSTSDQVFSKAVDNWENR 1924
Query: 1318 LKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQA 1377
L++TQ SLW REPLLAFRR+VFGASGLGA+VGNCWLQYAKLCRLAGHYETA RAILEAQA
Sbjct: 1925 LRFTQSSLWTREPLLAFRRLVFGASGLGAQVGNCWLQYAKLCRLAGHYETAHRAILEAQA 1984
Query: 1378 SGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPV 1437
SGAPNVHMEKAKLLW T+RSD AI ELQQ+LLN P VV ST ISSI SL + P NP P
Sbjct: 1985 SGAPNVHMEKAKLLWITKRSDSAIIELQQSLLNMPEGVVDSTVISSINSLLMAPPNPEPT 2044
Query: 1438 LSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497
+ NTQ+ EK+D+AKTLLLYS+WIH++GQKQK+DV+ LY++V+EL P WEKGYF++AKY
Sbjct: 2045 VRNTQSFKEKKDVAKTLLLYSKWIHHSGQKQKKDVLNLYTQVKELLP-WEKGYFHLAKYY 2103
Query: 1498 DDVLVDARKRQEENSEIG-------------PSEKRWWFYVPDVLLFYAKGLHRGHKNLF 1544
D++ VDARK ++E+S + +EK W Y+ + FYAK LH GHKNLF
Sbjct: 2104 DELYVDARKCEQESSVLSSAGSKKGSVSSNLSTEKAGWDYLFKGMYFYAKALHSGHKNLF 2163
Query: 1545 QALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVS 1604
QALPRLLTLWFDFG+I + +GS NK+LK+ + K+MS+MRGCLKDLP YQWLTVLPQLVS
Sbjct: 2164 QALPRLLTLWFDFGTIYKTSGSVGNKELKSTHMKIMSLMRGCLKDLPTYQWLTVLPQLVS 2223
Query: 1605 RICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAH 1664
RICHQN + V +VK+IITSVL Q+PQQGLWIMAAVSKST+P+RREAAAEIIQ A+KG
Sbjct: 2224 RICHQNGDTVLMVKNIITSVLHQFPQQGLWIMAAVSKSTVPARREAAAEIIQGARKGFNQ 2283
Query: 1665 GNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTV 1724
+ +NLF QF S+ DH IKLCFH GQ +S+ INI+TEFSALKRMMPL IIMPIQQSLT+
Sbjct: 2284 SDRGHNLFIQFASVTDHFIKLCFHGGQPRSKVINIATEFSALKRMMPLDIIMPIQQSLTI 2343
Query: 1725 TLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCK 1784
+LP D N E S+ +FS SDLPTISGIADEAEILSSLQRPKKI+LLG+DGI+ PFLCK
Sbjct: 2344 SLPAFDMNNNEGHSASVFSGSDLPTISGIADEAEILSSLQRPKKIILLGNDGIEYPFLCK 2403
Query: 1785 PKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLR 1844
PKDDLRKD+RMMEFTAMINRLLSKYPESRRRKLYIRTFAV PLTEDCG+VEWVPHTRGLR
Sbjct: 2404 PKDDLRKDARMMEFTAMINRLLSKYPESRRRKLYIRTFAVAPLTEDCGLVEWVPHTRGLR 2463
Query: 1845 NILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFS 1904
+ILQDIYISCG+FDRQKTNPQIKRIYDQ K E EMLKTKILPMFPPVFHKWFLTTFS
Sbjct: 2464 HILQDIYISCGRFDRQKTNPQIKRIYDQCAVK-KEYEMLKTKILPMFPPVFHKWFLTTFS 2522
Query: 1905 EPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL 1964
EPAAWFR+RVAYAHTTAVWSMVGHIVGLGDRHGENILFDST+GDCVHVDFSCLFDKGL L
Sbjct: 2523 EPAAWFRSRVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTSGDCVHVDFSCLFDKGLQL 2582
Query: 1965 EKPELVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEW 2024
EKPELVPFRLTQNMIDGLGITGYEG F+RVCEITL+VLRTHRETLMS+LETFIHDPLVEW
Sbjct: 2583 EKPELVPFRLTQNMIDGLGITGYEGIFMRVCEITLTVLRTHRETLMSILETFIHDPLVEW 2642
Query: 2025 TKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKN 2084
TKSHKSSGVEV+NPHAQRAIS+IEARLQG VVGV VEGQARRLIA+AVS +N
Sbjct: 2643 TKSHKSSGVEVQNPHAQRAISSIEARLQGVVVGVPL------PVEGQARRLIADAVSLEN 2696
Query: 2085 LGKMYIWWMPWF 2096
LGKMYIWWMPWF
Sbjct: 2697 LGKMYIWWMPWF 2708
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18422029|ref|NP_198898.2| serine/threonine-protein kinase ATR [Arabidopsis thaliana] gi|55976592|sp|Q9FKS4.2|ATR_ARATH RecName: Full=Serine/threonine-protein kinase ATR; Short=AtATR; AltName: Full=Ataxia telangiectasia-mutated and Rad3-related homolog; AltName: Full=DNA repair protein ATR; AltName: Full=Rad3-like protein; Short=AtRAD3 gi|332007216|gb|AED94599.1| serine/threonine-protein kinase ATR [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2992 bits (7756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1487/2112 (70%), Positives = 1738/2112 (82%), Gaps = 35/2112 (1%)
Query: 4 SDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFP 63
SD +I +L D+F++V+A A IS+P+ V++SGLG L ++F +LE L +++ +K+ P
Sbjct: 607 SDFDIFSWSLSDDFEQVQAVAAISMPLKVLFSGLGALLHMFPKLEHLLEEKELMIKKAIP 666
Query: 64 ISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQE 123
S GFLSCL G SS D +K AC LLL+ ED +T++ LL+ F CSKCD + E
Sbjct: 667 QSLGFLSCLYG--SSTTDSEKTACHLLLH-EDLKKDETLNSLLQGFRCSKCDKFIEREDE 723
Query: 124 LSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDV 183
+I+ ++ ++ H D+ L ++YF LYDESSEE QL+CV VIRRIL H + D+
Sbjct: 724 KHFRIIETPEMVKLKMDHHRDYFNLQSLYFNLLYDESSEETQLACVEVIRRILGHTSPDI 783
Query: 184 LLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLD 243
L++TRS+WI+C+++LL++ +R+AFC QIG F+Q ++S LFL E+A+ +S E +
Sbjct: 784 LVRTRSQWIRCLQYLLVHVNTDVREAFCAQIGIFVQHPIVSCLFLSEDATEKSCERNFFN 843
Query: 244 VIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASR 303
+I+ + AA D L+++TLLE+TAE+M+AVDV S+ FL L LL++QLD+P++ VR+NAS+
Sbjct: 844 LIEHSLAAAKDLLVIQTLLETTAEVMVAVDVTSELFLICLFLLIDQLDHPNLIVRINASK 903
Query: 304 LIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVK 363
LI +SC+ H+KGG L+S A I NELFD LSVRL SRP +VREFAEA GVETEELV+
Sbjct: 904 LINRSCYIHVKGGFATLLSTASHIQNELFDNLSVRLTSRPNVVREFAEAVLGVETEELVR 963
Query: 364 KMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLL 423
KM+PAVLPKL+V Q+N QA N +NELAK ++TD+VPLIV W+P+VLAFAL+Q +++ LL
Sbjct: 964 KMVPAVLPKLLVYWQENAQAANTLNELAKLIDTDVVPLIVNWLPRVLAFALNQEEDKNLL 1023
Query: 424 SALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLT 483
S L+ Y Q GSDNQEIFAAALPALLDEL+CFVD D+ E + RL R+P I+K+S VLT
Sbjct: 1024 SVLQLYHSQIGSDNQEIFAAALPALLDELVCFVDIADTPETDRRLQRLPDAIKKISKVLT 1083
Query: 484 GNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILV 543
EDLPGFL+NHFVGLLNSIDRKMLHA+D+ LQKQALKRI++LIEM+G +L+TYVPK++V
Sbjct: 1084 NAEDLPGFLQNHFVGLLNSIDRKMLHADDIFLQKQALKRIKLLIEMMGHYLSTYVPKLMV 1143
Query: 544 LLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLL 603
LLMHAI K++LQ EGL VLHFF +L+ VSPSS K+VISQ+FAALIPFLE++K+ P V L
Sbjct: 1144 LLMHAIEKDALQSEGLLVLHFFTRKLADVSPSSIKYVISQIFAALIPFLEKEKEGPHVYL 1203
Query: 604 NKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDG 663
++VVKILE+LVLKNR I+K+HI EFPLLPSI +L E+N AIQEARG M+LKDQL V+G
Sbjct: 1204 DEVVKILEELVLKNRDIVKEHICEFPLLPSIPSLGELNNAIQEARGLMSLKDQLRDIVNG 1263
Query: 664 LNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTV 723
+ HENLNVRYMV CELSKLL ++EDV ALI GE SD+++LS+LI+ LL+GCAEESRT
Sbjct: 1264 MKHENLNVRYMVACELSKLLYNRNEDVAALIAGELVSDMEILSSLITYLLQGCAEESRTT 1323
Query: 724 VGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAAPDT 783
VGQ+LKLVCADCLGA+GA+DPAKV+ SC RFKI+CSDDDLIFELI KHLARAFRAA DT
Sbjct: 1324 VGQRLKLVCADCLGAIGAIDPAKVRVASCSRFKIQCSDDDLIFELIHKHLARAFRAAQDT 1383
Query: 784 IIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNMR 843
IIQDSAALAIQELLKIAGCE SL NV VL +EH+ V SG+ +E+ R
Sbjct: 1384 IIQDSAALAIQELLKIAGCEPSLAGNV-----VVLTPQEHVQVNVSGSRRCGGNNEVKDR 1438
Query: 844 GRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTVHA 903
G+K WDRFS YVKE+IAPCLTSRFQLP+ SD S GPIY PSMSFRRW+ YWIRKLT A
Sbjct: 1439 GQKLWDRFSNYVKELIAPCLTSRFQLPNVSDPGSAGPIYRPSMSFRRWLSYWIRKLTAFA 1498
Query: 904 TGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASDH 963
TGSR SIF ACRGIVRHDMQTA YLLPYLVL+ VCHGTE ARL I++EILSVLDAAAS++
Sbjct: 1499 TGSRVSIFAACRGIVRHDMQTATYLLPYLVLDVVCHGTEAARLSISEEILSVLDAAASEN 1558
Query: 964 SGASVHGIS-GQSEVCIQAIFTLLDNLGQWVDDVKQELA---LSESLTSKQQGSKSKHPA 1019
SG +++ GQSEVC+QA+FTLLDNLGQWVDDVKQ +A +S +Q KSK
Sbjct: 1559 SGVTINSFGVGQSEVCVQAVFTLLDNLGQWVDDVKQGVALSSSLQSSGGRQVAPKSKDQV 1618
Query: 1020 --SSMHQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPA 1077
S+ QD LL QC+YV LL AIPKVTLARASFRCQAYARSLMY ESHVR KSGS NPA
Sbjct: 1619 SNSTTEQDHLLVQCKYVLELLLAIPKVTLARASFRCQAYARSLMYLESHVRGKSGSLNPA 1678
Query: 1078 AEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSC 1137
AEK+G FE+ DVS LM IYS LDEPDGLSG A L KSL+LQD+LL NKKSGNWA+VFT+C
Sbjct: 1679 AEKTGIFENADVSSLMGIYSCLDEPDGLSGFASLSKSLNLQDQLLINKKSGNWADVFTAC 1738
Query: 1138 EQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197
EQALQMEPTSVQRHSDVLNCLLNMCH Q MVTHVDGLISR+P+YKKTWC QGVQAAWRLG
Sbjct: 1739 EQALQMEPTSVQRHSDVLNCLLNMCHHQTMVTHVDGLISRVPEYKKTWCTQGVQAAWRLG 1798
Query: 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIA 1257
+WDLMDEYL GAD EGLL SSS+SNASFD DVAKIL AMMKKD +SV++ I +SKQ LIA
Sbjct: 1799 KWDLMDEYLDGADAEGLLFSSSDSNASFDRDVAKILHAMMKKDQYSVAEGIAISKQALIA 1858
Query: 1258 PLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENR 1317
PLAAAGMDSYTRAYPF+VKLHLL+ELEDF A+L DS+LEKSF SD FSK + NWENR
Sbjct: 1859 PLAAAGMDSYTRAYPFVVKLHLLRELEDFQAVLNGDSYLEKSFSTSDQVFSKAVDNWENR 1918
Query: 1318 LKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQA 1377
L++TQ SLW REPLLAFRR+VFGASGLGA+VGNCWLQYAKLCRLAGHYETA RAILEAQA
Sbjct: 1919 LRFTQSSLWTREPLLAFRRLVFGASGLGAQVGNCWLQYAKLCRLAGHYETAHRAILEAQA 1978
Query: 1378 SGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPV 1437
SGAPNVHMEKAKLLW T+RSD AI ELQQ+LLN P VV ST ISSI SL + P NP P
Sbjct: 1979 SGAPNVHMEKAKLLWITKRSDSAIIELQQSLLNMPEGVVDSTVISSINSLLMAPPNPEPT 2038
Query: 1438 LSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497
+ NTQ+ EK+D+AKTLLLYS+WIH++GQKQK+DV+ LY++V+EL P WEKGYF++AKY
Sbjct: 2039 VRNTQSFKEKKDVAKTLLLYSKWIHHSGQKQKKDVLNLYTQVKELLP-WEKGYFHLAKYY 2097
Query: 1498 DDVLVDARKRQEENSEIG-------------PSEKRWWFYVPDVLLFYAKGLHRGHKNLF 1544
D++ VDARK Q+E+S +EK W Y+ + FYAK LH GHKNLF
Sbjct: 2098 DELYVDARKCQQESSVFSSAGSKKGSVSSNLSTEKAGWDYLFKGMYFYAKALHSGHKNLF 2157
Query: 1545 QALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVS 1604
QALPRLLTLWFDFG+I + +GS+ NK+LK+ + K+MS+MRGCLKDLP YQWLTVLPQLVS
Sbjct: 2158 QALPRLLTLWFDFGTIYKTSGSAGNKELKSTHMKIMSLMRGCLKDLPTYQWLTVLPQLVS 2217
Query: 1605 RICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAH 1664
RICHQN + V +VK+IITSVL Q+PQQGLWIMAAVSKST+P+RREAAAEIIQ A+KG
Sbjct: 2218 RICHQNADTVLMVKNIITSVLHQFPQQGLWIMAAVSKSTVPARREAAAEIIQGARKGFNQ 2277
Query: 1665 GNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTV 1724
+ +NLF QF SL DH IKLCFH GQ +S+ INI+TEFSALKRMMPL IIMPIQQSLT+
Sbjct: 2278 SDRGHNLFIQFASLTDHFIKLCFHGGQPRSKVINIATEFSALKRMMPLDIIMPIQQSLTI 2337
Query: 1725 TLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCK 1784
+LP N E S+ +FS SDLPTISGIADEAEILSSLQRPKKI+LLG+DGI+ PFLCK
Sbjct: 2338 SLPAFHMNNNERHSASVFSGSDLPTISGIADEAEILSSLQRPKKIILLGNDGIEYPFLCK 2397
Query: 1785 PKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLR 1844
PKDDLRKD+RMMEFTAMINRLLSKYPESRRRKLYIRTFAV PLTEDCG+VEWVPHTRGLR
Sbjct: 2398 PKDDLRKDARMMEFTAMINRLLSKYPESRRRKLYIRTFAVAPLTEDCGLVEWVPHTRGLR 2457
Query: 1845 NILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFS 1904
+ILQDIYISCGKFDRQKTNPQIKRIYDQ K E EMLKTKILPMFPPVFHKWFLTTFS
Sbjct: 2458 HILQDIYISCGKFDRQKTNPQIKRIYDQCAVK-KEYEMLKTKILPMFPPVFHKWFLTTFS 2516
Query: 1905 EPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL 1964
EPAAWFR+RVAYAHTTAVWSMVGHIVGLGDRHGENILFDST+GDCVHVDFSCLFDKGL L
Sbjct: 2517 EPAAWFRSRVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTSGDCVHVDFSCLFDKGLQL 2576
Query: 1965 EKPELVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEW 2024
EKPELVPFRLTQNMIDGLGITGYEG F+RVCEITL+VLRTHRETLMS+LETFIHDPLVEW
Sbjct: 2577 EKPELVPFRLTQNMIDGLGITGYEGIFMRVCEITLTVLRTHRETLMSILETFIHDPLVEW 2636
Query: 2025 TKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKN 2084
TKSHKSSGVEV+NPHAQRAIS+IEARLQG VVGV VEGQARRLIA+AVS +N
Sbjct: 2637 TKSHKSSGVEVQNPHAQRAISSIEARLQGVVVGVPL------PVEGQARRLIADAVSLEN 2690
Query: 2085 LGKMYIWWMPWF 2096
LGKMYIWWMPWF
Sbjct: 2691 LGKMYIWWMPWF 2702
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7288126|dbj|BAA92828.1| AtRAD3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2992 bits (7756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1487/2112 (70%), Positives = 1738/2112 (82%), Gaps = 35/2112 (1%)
Query: 4 SDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFP 63
SD +I +L D+F++V+A A IS+P+ V++SGLG L ++F +LE L +++ +K+ P
Sbjct: 608 SDFDIFSWSLSDDFEQVQAVAAISMPLKVLFSGLGALLHMFPKLEHLLEEKELMIKKAIP 667
Query: 64 ISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQE 123
S GFLSCL G SS D +K AC LLL+ ED +T++ LL+ F CSKCD + E
Sbjct: 668 QSLGFLSCLYG--SSTTDSEKTACHLLLH-EDLKKDETLNSLLQGFRCSKCDKFIEREDE 724
Query: 124 LSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDV 183
+I+ ++ ++ H D+ L ++YF LYDESSEE QL+CV VIRRIL H + D+
Sbjct: 725 KHFRIIETPEMVKLKMDHHRDYFNLQSLYFNLLYDESSEETQLACVEVIRRILGHTSPDI 784
Query: 184 LLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLD 243
L++TRS+WI+C+++LL++ +R+AFC QIG F+Q ++S LFL E+A+ +S E +
Sbjct: 785 LVRTRSQWIRCLQYLLVHVNTDVREAFCAQIGIFVQHPIVSCLFLSEDATEKSCERNFFN 844
Query: 244 VIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASR 303
+I+ + AA D L+++TLLE+TAE+M+AVDV S+ FL L LL++QLD+P++ VR+NAS+
Sbjct: 845 LIEHSLAAAKDLLVIQTLLETTAEVMVAVDVTSELFLICLFLLIDQLDHPNLIVRINASK 904
Query: 304 LIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVK 363
LI +SC+ H+KGG L+S A I NELFD LSVRL SRP +VREFAEA GVETEELV+
Sbjct: 905 LINRSCYIHVKGGFATLLSTASHIQNELFDNLSVRLTSRPNVVREFAEAVLGVETEELVR 964
Query: 364 KMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLL 423
KM+PAVLPKL+V Q+N QA N +NELAK ++TD+VPLIV W+P+VLAFAL+Q +++ LL
Sbjct: 965 KMVPAVLPKLLVYWQENAQAANTLNELAKLIDTDVVPLIVNWLPRVLAFALNQEEDKNLL 1024
Query: 424 SALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLT 483
S L+ Y Q GSDNQEIFAAALPALLDEL+CFVD D+ E + RL R+P I+K+S VLT
Sbjct: 1025 SVLQLYHSQIGSDNQEIFAAALPALLDELVCFVDIADTPETDRRLQRLPDAIKKISKVLT 1084
Query: 484 GNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILV 543
EDLPGFL+NHFVGLLNSIDRKMLHA+D+ LQKQALKRI++LIEM+G +L+TYVPK++V
Sbjct: 1085 NAEDLPGFLQNHFVGLLNSIDRKMLHADDIFLQKQALKRIKLLIEMMGHYLSTYVPKLMV 1144
Query: 544 LLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLL 603
LLMHAI K++LQ EGL VLHFF +L+ VSPSS K+VISQ+FAALIPFLE++K+ P V L
Sbjct: 1145 LLMHAIEKDALQSEGLLVLHFFTRKLADVSPSSIKYVISQIFAALIPFLEKEKEGPHVYL 1204
Query: 604 NKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDG 663
++VVKILE+LVLKNR I+K+HI EFPLLPSI +L E+N AIQEARG M+LKDQL V+G
Sbjct: 1205 DEVVKILEELVLKNRDIVKEHICEFPLLPSIPSLGELNNAIQEARGLMSLKDQLRDIVNG 1264
Query: 664 LNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTV 723
+ HENLNVRYMV CELSKLL ++EDV ALI GE SD+++LS+LI+ LL+GCAEESRT
Sbjct: 1265 MKHENLNVRYMVACELSKLLYNRNEDVAALIAGELVSDMEILSSLITYLLQGCAEESRTT 1324
Query: 724 VGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAAPDT 783
VGQ+LKLVCADCLGA+GA+DPAKV+ SC RFKI+CSDDDLIFELI KHLARAFRAA DT
Sbjct: 1325 VGQRLKLVCADCLGAIGAIDPAKVRVASCSRFKIQCSDDDLIFELIHKHLARAFRAAQDT 1384
Query: 784 IIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNMR 843
IIQDSAALAIQELLKIAGCE SL NV VL +EH+ V SG+ +E+ R
Sbjct: 1385 IIQDSAALAIQELLKIAGCEPSLAGNV-----VVLTPQEHVQVNVSGSRRCGGNNEVKDR 1439
Query: 844 GRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTVHA 903
G+K WDRFS YVKE+IAPCLTSRFQLP+ SD S GPIY PSMSFRRW+ YWIRKLT A
Sbjct: 1440 GQKLWDRFSNYVKELIAPCLTSRFQLPNVSDPGSAGPIYRPSMSFRRWLSYWIRKLTAFA 1499
Query: 904 TGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASDH 963
TGSR SIF ACRGIVRHDMQTA YLLPYLVL+ VCHGTE ARL I++EILSVLDAAAS++
Sbjct: 1500 TGSRVSIFAACRGIVRHDMQTATYLLPYLVLDVVCHGTEAARLSISEEILSVLDAAASEN 1559
Query: 964 SGASVHGIS-GQSEVCIQAIFTLLDNLGQWVDDVKQELA---LSESLTSKQQGSKSKHPA 1019
SG +++ GQSEVC+QA+FTLLDNLGQWVDDVKQ +A +S +Q KSK
Sbjct: 1560 SGVTINSFGVGQSEVCVQAVFTLLDNLGQWVDDVKQGVALSSSLQSSGGRQVAPKSKDQV 1619
Query: 1020 --SSMHQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPA 1077
S+ QD LL QC+YV LL AIPKVTLARASFRCQAYARSLMY ESHVR KSGS NPA
Sbjct: 1620 SNSTTEQDHLLVQCKYVLELLLAIPKVTLARASFRCQAYARSLMYLESHVRGKSGSLNPA 1679
Query: 1078 AEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSC 1137
AEK+G FE+ DVS LM IYS LDEPDGLSG A L KSL+LQD+LL NKKSGNWA+VFT+C
Sbjct: 1680 AEKTGIFENADVSSLMGIYSCLDEPDGLSGFASLSKSLNLQDQLLINKKSGNWADVFTAC 1739
Query: 1138 EQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197
EQALQMEPTSVQRHSDVLNCLLNMCH Q MVTHVDGLISR+P+YKKTWC QGVQAAWRLG
Sbjct: 1740 EQALQMEPTSVQRHSDVLNCLLNMCHHQTMVTHVDGLISRVPEYKKTWCTQGVQAAWRLG 1799
Query: 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIA 1257
+WDLMDEYL GAD EGLL SSS+SNASFD DVAKIL AMMKKD +SV++ I +SKQ LIA
Sbjct: 1800 KWDLMDEYLDGADAEGLLFSSSDSNASFDRDVAKILHAMMKKDQYSVAEGIAISKQALIA 1859
Query: 1258 PLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENR 1317
PLAAAGMDSYTRAYPF+VKLHLL+ELEDF A+L DS+LEKSF SD FSK + NWENR
Sbjct: 1860 PLAAAGMDSYTRAYPFVVKLHLLRELEDFQAVLNGDSYLEKSFSTSDQVFSKAVDNWENR 1919
Query: 1318 LKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQA 1377
L++TQ SLW REPLLAFRR+VFGASGLGA+VGNCWLQYAKLCRLAGHYETA RAILEAQA
Sbjct: 1920 LRFTQSSLWTREPLLAFRRLVFGASGLGAQVGNCWLQYAKLCRLAGHYETAHRAILEAQA 1979
Query: 1378 SGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPV 1437
SGAPNVHMEKAKLLW T+RSD AI ELQQ+LLN P VV ST ISSI SL + P NP P
Sbjct: 1980 SGAPNVHMEKAKLLWITKRSDSAIIELQQSLLNMPEGVVDSTVISSINSLLMAPPNPEPT 2039
Query: 1438 LSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497
+ NTQ+ EK+D+AKTLLLYS+WIH++GQKQK+DV+ LY++V+EL P WEKGYF++AKY
Sbjct: 2040 VRNTQSFKEKKDVAKTLLLYSKWIHHSGQKQKKDVLNLYTQVKELLP-WEKGYFHLAKYY 2098
Query: 1498 DDVLVDARKRQEENSEIG-------------PSEKRWWFYVPDVLLFYAKGLHRGHKNLF 1544
D++ VDARK Q+E+S +EK W Y+ + FYAK LH GHKNLF
Sbjct: 2099 DELYVDARKCQQESSVFSSAGSKKGSVSSNLSTEKAGWDYLFKGMYFYAKALHSGHKNLF 2158
Query: 1545 QALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVS 1604
QALPRLLTLWFDFG+I + +GS+ NK+LK+ + K+MS+MRGCLKDLP YQWLTVLPQLVS
Sbjct: 2159 QALPRLLTLWFDFGTIYKTSGSAGNKELKSTHMKIMSLMRGCLKDLPTYQWLTVLPQLVS 2218
Query: 1605 RICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAH 1664
RICHQN + V +VK+IITSVL Q+PQQGLWIMAAVSKST+P+RREAAAEIIQ A+KG
Sbjct: 2219 RICHQNADTVLMVKNIITSVLHQFPQQGLWIMAAVSKSTVPARREAAAEIIQGARKGFNQ 2278
Query: 1665 GNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTV 1724
+ +NLF QF SL DH IKLCFH GQ +S+ INI+TEFSALKRMMPL IIMPIQQSLT+
Sbjct: 2279 SDRGHNLFIQFASLTDHFIKLCFHGGQPRSKVINIATEFSALKRMMPLDIIMPIQQSLTI 2338
Query: 1725 TLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCK 1784
+LP N E S+ +FS SDLPTISGIADEAEILSSLQRPKKI+LLG+DGI+ PFLCK
Sbjct: 2339 SLPAFHMNNNERHSASVFSGSDLPTISGIADEAEILSSLQRPKKIILLGNDGIEYPFLCK 2398
Query: 1785 PKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLR 1844
PKDDLRKD+RMMEFTAMINRLLSKYPESRRRKLYIRTFAV PLTEDCG+VEWVPHTRGLR
Sbjct: 2399 PKDDLRKDARMMEFTAMINRLLSKYPESRRRKLYIRTFAVAPLTEDCGLVEWVPHTRGLR 2458
Query: 1845 NILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFS 1904
+ILQDIYISCGKFDRQKTNPQIKRIYDQ K E EMLKTKILPMFPPVFHKWFLTTFS
Sbjct: 2459 HILQDIYISCGKFDRQKTNPQIKRIYDQCAVK-KEYEMLKTKILPMFPPVFHKWFLTTFS 2517
Query: 1905 EPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL 1964
EPAAWFR+RVAYAHTTAVWSMVGHIVGLGDRHGENILFDST+GDCVHVDFSCLFDKGL L
Sbjct: 2518 EPAAWFRSRVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTSGDCVHVDFSCLFDKGLQL 2577
Query: 1965 EKPELVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEW 2024
EKPELVPFRLTQNMIDGLGITGYEG F+RVCEITL+VLRTHRETLMS+LETFIHDPLVEW
Sbjct: 2578 EKPELVPFRLTQNMIDGLGITGYEGIFMRVCEITLTVLRTHRETLMSILETFIHDPLVEW 2637
Query: 2025 TKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKN 2084
TKSHKSSGVEV+NPHAQRAIS+IEARLQG VVGV VEGQARRLIA+AVS +N
Sbjct: 2638 TKSHKSSGVEVQNPHAQRAISSIEARLQGVVVGVPL------PVEGQARRLIADAVSLEN 2691
Query: 2085 LGKMYIWWMPWF 2096
LGKMYIWWMPWF
Sbjct: 2692 LGKMYIWWMPWF 2703
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|10177961|dbj|BAB11344.1| AtRAD3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2983 bits (7733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1487/2113 (70%), Positives = 1737/2113 (82%), Gaps = 36/2113 (1%)
Query: 4 SDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFP 63
SD +I +L D+F++V+A A IS+P+ V++SGLG L ++F +LE L +++ +K+ P
Sbjct: 607 SDFDIFSWSLSDDFEQVQAVAAISMPLKVLFSGLGALLHMFPKLEHLLEEKELMIKKAIP 666
Query: 64 ISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQE 123
S GFLSCL G SS D +K AC LLL+ ED +T++ LL+ F CSKCD + E
Sbjct: 667 QSLGFLSCLYG--SSTTDSEKTACHLLLH-EDLKKDETLNSLLQGFRCSKCDKFIEREDE 723
Query: 124 LSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDV 183
+I+ ++ ++ H D+ L ++YF LYDESSEE QL+CV VIRRIL H + D+
Sbjct: 724 KHFRIIETPEMVKLKMDHHRDYFNLQSLYFNLLYDESSEETQLACVEVIRRILGHTSPDI 783
Query: 184 LLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLD 243
L++TRS+WI+C+++LL++ +R+AFC QIG F+Q ++S LFL E+A+ +S E +
Sbjct: 784 LVRTRSQWIRCLQYLLVHVNTDVREAFCAQIGIFVQHPIVSCLFLSEDATEKSCERNFFN 843
Query: 244 VIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASR 303
+I+ + AA D L+++TLLE+TAE+M+AVDV S+ FL L LL++QLD+P++ VR+NAS+
Sbjct: 844 LIEHSLAAAKDLLVIQTLLETTAEVMVAVDVTSELFLICLFLLIDQLDHPNLIVRINASK 903
Query: 304 LIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVK 363
LI +SC+ H+KGG L+S A I NELFD LSVRL SRP +VREFAEA GVETEELV+
Sbjct: 904 LINRSCYIHVKGGFATLLSTASHIQNELFDNLSVRLTSRPNVVREFAEAVLGVETEELVR 963
Query: 364 KMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLL 423
KM+PAVLPKL+V Q+N QA N +NELAK ++TD+VPLIV W+P+VLAFAL+Q +++ LL
Sbjct: 964 KMVPAVLPKLLVYWQENAQAANTLNELAKLIDTDVVPLIVNWLPRVLAFALNQEEDKNLL 1023
Query: 424 SALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLT 483
S L+ Y Q GSDNQEIFAAALPALLDEL+CFVD D+ E + RL R+P I+K+S VLT
Sbjct: 1024 SVLQLYHSQIGSDNQEIFAAALPALLDELVCFVDIADTPETDRRLQRLPDAIKKISKVLT 1083
Query: 484 GNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILV 543
EDLPGFL+NHFVGLLNSIDRKMLHA+D+ LQKQALKRI++LIEM+G +L+TYVPK++V
Sbjct: 1084 NAEDLPGFLQNHFVGLLNSIDRKMLHADDIFLQKQALKRIKLLIEMMGHYLSTYVPKLMV 1143
Query: 544 LLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLL 603
LLMHAI K++LQ EGL VLHFF +L+ VSPSS K+VISQ+FAALIPFLE++K+ P V L
Sbjct: 1144 LLMHAIEKDALQSEGLLVLHFFTRKLADVSPSSIKYVISQIFAALIPFLEKEKEGPHVYL 1203
Query: 604 NKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDG 663
++VVKILE+LVLKNR I+K+HI EFPLLPSI +L E+N AIQEARG M+LKDQL V+G
Sbjct: 1204 DEVVKILEELVLKNRDIVKEHICEFPLLPSIPSLGELNNAIQEARGLMSLKDQLRDIVNG 1263
Query: 664 LNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTV 723
+ HENLNVRYMV CELSKLL ++EDV ALI GE SD+++LS+LI+ LL+GCAEESRT
Sbjct: 1264 MKHENLNVRYMVACELSKLLYNRNEDVAALIAGELVSDMEILSSLITYLLQGCAEESRTT 1323
Query: 724 VGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAAPDT 783
VGQ+LKLVCADCLGA+GA+DPAKV+ SC RFKI+CSDDDLIFELI KHLARAFRAA DT
Sbjct: 1324 VGQRLKLVCADCLGAIGAIDPAKVRVASCSRFKIQCSDDDLIFELIHKHLARAFRAAQDT 1383
Query: 784 IIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNMR 843
IIQDSAALAIQELLKIAGCE SL NV VL +EH+ V SG+ +E+ R
Sbjct: 1384 IIQDSAALAIQELLKIAGCEPSLAGNV-----VVLTPQEHVQVNVSGSRRCGGNNEVKDR 1438
Query: 844 GRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTVHA 903
G+K WDRFS YVKE+IAPCLTSRFQLP+ SD S GPIY PSMSFRRW+ YWIRKLT A
Sbjct: 1439 GQKLWDRFSNYVKELIAPCLTSRFQLPNVSDPGSAGPIYRPSMSFRRWLSYWIRKLTAFA 1498
Query: 904 TGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASDH 963
TGSR SIF ACRGIVRHDMQTA YLLPYLVL+ VCHGTE ARL I++EILSVLDAAAS++
Sbjct: 1499 TGSRVSIFAACRGIVRHDMQTATYLLPYLVLDVVCHGTEAARLSISEEILSVLDAAASEN 1558
Query: 964 SGASVHGIS-GQSEVCIQAIFTLLDNLGQWVDDVKQELA---LSESLTSKQQGSKSKHPA 1019
SG +++ GQSEVC+QA+FTLLDNLGQWVDDVKQ +A +S +Q KSK
Sbjct: 1559 SGVTINSFGVGQSEVCVQAVFTLLDNLGQWVDDVKQGVALSSSLQSSGGRQVAPKSKDQV 1618
Query: 1020 --SSMHQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPA 1077
S+ QD LL QC+YV LL AIPKVTLARASFRCQAYARSLMY ESHVR KSGS NPA
Sbjct: 1619 SNSTTEQDHLLVQCKYVLELLLAIPKVTLARASFRCQAYARSLMYLESHVRGKSGSLNPA 1678
Query: 1078 AEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSC 1137
AEK+G FE+ DVS LM IYS LDEPDGLSG A L KSL+LQD+LL NKKSGNWA+VFT+C
Sbjct: 1679 AEKTGIFENADVSSLMGIYSCLDEPDGLSGFASLSKSLNLQDQLLINKKSGNWADVFTAC 1738
Query: 1138 EQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197
EQALQMEPTSVQRHSDVLNCLLNMCH Q MVTHVDGLISR+P+YKKTWC QGVQAAWRLG
Sbjct: 1739 EQALQMEPTSVQRHSDVLNCLLNMCHHQTMVTHVDGLISRVPEYKKTWCTQGVQAAWRLG 1798
Query: 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIA 1257
+WDLMDEYL GAD EGLL SSS+SNASFD DVAKIL AMMKKD +SV++ I +SKQ LIA
Sbjct: 1799 KWDLMDEYLDGADAEGLLFSSSDSNASFDRDVAKILHAMMKKDQYSVAEGIAISKQALIA 1858
Query: 1258 PLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENR 1317
PLAAAGMDSYTRAYPF+VKLHLL+ELEDF A+L DS+LEKSF SD FSK + NWENR
Sbjct: 1859 PLAAAGMDSYTRAYPFVVKLHLLRELEDFQAVLNGDSYLEKSFSTSDQVFSKAVDNWENR 1918
Query: 1318 LKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQA 1377
L++TQ SLW REPLLAFRR+VFGASGLGA+VGNCWLQYAKLCRLAGHYETA RAILEAQA
Sbjct: 1919 LRFTQSSLWTREPLLAFRRLVFGASGLGAQVGNCWLQYAKLCRLAGHYETAHRAILEAQA 1978
Query: 1378 SGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPV 1437
SGAPNVHMEKAKLLW T+RSD AI ELQQ+LLN P VV ST ISSI SL + P NP P
Sbjct: 1979 SGAPNVHMEKAKLLWITKRSDSAIIELQQSLLNMPEGVVDSTVISSINSLLMAPPNPEPT 2038
Query: 1438 LSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497
+ NTQ+ EK+D+AKTLLLYS+WIH++GQKQK+DV+ LY++V+EL P WEKGYF++AKY
Sbjct: 2039 VRNTQSFKEKKDVAKTLLLYSKWIHHSGQKQKKDVLNLYTQVKELLP-WEKGYFHLAKYY 2097
Query: 1498 DDVLVDARKRQEENSEIG-------------PSEKRWWFYVPDVLLFYAKGLHRGHKNLF 1544
D++ VDARK Q+E+S +EK W Y+ + FYAK LH GHKNLF
Sbjct: 2098 DELYVDARKCQQESSVFSSAGSKKGSVSSNLSTEKAGWDYLFKGMYFYAKALHSGHKNLF 2157
Query: 1545 QALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKV-MSIMRGCLKDLPAYQWLTVLPQLV 1603
QALPRLLTLWFDFG+I + +GS+ NK+LK+ + KV MS+MRGCLKDLP YQWLTVLPQLV
Sbjct: 2158 QALPRLLTLWFDFGTIYKTSGSAGNKELKSTHMKVIMSLMRGCLKDLPTYQWLTVLPQLV 2217
Query: 1604 SRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSA 1663
SRICHQN + V +VK+IITSVL Q+PQQGLWIMAAVSKST+P+RREAAAEIIQ A+KG
Sbjct: 2218 SRICHQNADTVLMVKNIITSVLHQFPQQGLWIMAAVSKSTVPARREAAAEIIQGARKGFN 2277
Query: 1664 HGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLT 1723
+ +NLF QF SL DH IKLCFH GQ +S+ INI+TEFSALKRMMPL IIMPIQQSLT
Sbjct: 2278 QSDRGHNLFIQFASLTDHFIKLCFHGGQPRSKVINIATEFSALKRMMPLDIIMPIQQSLT 2337
Query: 1724 VTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLC 1783
++LP N E S+ +FS SDLPTISGIADEAEILSSLQRPKKI+LLG+DGI+ PFLC
Sbjct: 2338 ISLPAFHMNNNERHSASVFSGSDLPTISGIADEAEILSSLQRPKKIILLGNDGIEYPFLC 2397
Query: 1784 KPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGL 1843
KPKDDLRKD+RMMEFTAMINRLLSKYPESRRRKLYIRTFAV PLTEDCG+VEWVPHTRGL
Sbjct: 2398 KPKDDLRKDARMMEFTAMINRLLSKYPESRRRKLYIRTFAVAPLTEDCGLVEWVPHTRGL 2457
Query: 1844 RNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTF 1903
R+ILQDIYISCGKFDRQKTNPQIKRIYDQ K E EMLKTKILPMFPPVFHKWFLTTF
Sbjct: 2458 RHILQDIYISCGKFDRQKTNPQIKRIYDQCAVK-KEYEMLKTKILPMFPPVFHKWFLTTF 2516
Query: 1904 SEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL 1963
SEPAAWFR+RVAYAHTTAVWSMVGHIVGLGDRHGENILFDST+GDCVHVDFSCLFDKGL
Sbjct: 2517 SEPAAWFRSRVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTSGDCVHVDFSCLFDKGLQ 2576
Query: 1964 LEKPELVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVE 2023
LEKPELVPFRLTQNMIDGLGITGYEG F+RVCEITL+VLRTHRETLMS+LETFIHDPLVE
Sbjct: 2577 LEKPELVPFRLTQNMIDGLGITGYEGIFMRVCEITLTVLRTHRETLMSILETFIHDPLVE 2636
Query: 2024 WTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHK 2083
WTKSHKSSGVEV+NPHAQRAIS+IEARLQG VVGV VEGQARRLIA+AVS +
Sbjct: 2637 WTKSHKSSGVEVQNPHAQRAISSIEARLQGVVVGVPL------PVEGQARRLIADAVSLE 2690
Query: 2084 NLGKMYIWWMPWF 2096
NLGKMYIWWMPW
Sbjct: 2691 NLGKMYIWWMPWL 2703
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 2096 | ||||||
| TAIR|locus:2164481 | 2702 | ATR "Ataxia telangiectasia-mut | 0.990 | 0.768 | 0.690 | 0.0 | |
| UNIPROTKB|F1NGW1 | 2664 | Gga.21455 "Uncharacterized pro | 0.297 | 0.233 | 0.411 | 6.8e-209 | |
| MGI|MGI:108028 | 2635 | Atr "ataxia telangiectasia and | 0.297 | 0.236 | 0.413 | 3.5e-208 | |
| UNIPROTKB|Q13535 | 2644 | ATR "Serine/threonine-protein | 0.298 | 0.236 | 0.406 | 3.6e-204 | |
| UNIPROTKB|J9P2H2 | 2640 | ATR "Uncharacterized protein" | 0.296 | 0.235 | 0.407 | 2e-203 | |
| UNIPROTKB|E2QXA4 | 2650 | ATR "Uncharacterized protein" | 0.296 | 0.234 | 0.407 | 2.1e-203 | |
| UNIPROTKB|Q9DE14 | 2654 | atr "Serine/threonine-protein | 0.298 | 0.235 | 0.402 | 1.6e-200 | |
| ZFIN|ZDB-GENE-070912-458 | 2651 | atr "ataxia telangiectasia and | 0.301 | 0.238 | 0.408 | 2.5e-189 | |
| UNIPROTKB|F1MLY7 | 2626 | ATR "Uncharacterized protein" | 0.296 | 0.236 | 0.409 | 5e-180 | |
| UNIPROTKB|F1SKG2 | 2646 | ATR "Uncharacterized protein" | 0.296 | 0.235 | 0.409 | 3e-179 |
| TAIR|locus:2164481 ATR "Ataxia telangiectasia-mutated and RAD3-related" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 7387 (2605.4 bits), Expect = 0., P = 0.
Identities = 1458/2112 (69%), Positives = 1703/2112 (80%)
Query: 4 SDSEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFP 63
SD +I +L D+F++V+A A IS+P+ V++SGLG L ++F +LE L +++ +K+ P
Sbjct: 607 SDFDIFSWSLSDDFEQVQAVAAISMPLKVLFSGLGALLHMFPKLEHLLEEKELMIKKAIP 666
Query: 64 ISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQE 123
S GFLSCL G SS D +K AC LLL+ ED +T++ LL+ F CSKCD + E
Sbjct: 667 QSLGFLSCLYG--SSTTDSEKTACHLLLH-EDLKKDETLNSLLQGFRCSKCDKFIEREDE 723
Query: 124 LSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDV 183
+I+ ++ ++ H D+ L ++YF LYDESSEE QL+CV VIRRIL H + D+
Sbjct: 724 KHFRIIETPEMVKLKMDHHRDYFNLQSLYFNLLYDESSEETQLACVEVIRRILGHTSPDI 783
Query: 184 LLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLD 243
L++TRS+WI+C+++LL++ +R+AFC QIG F+Q ++S LFL E+A+ +S E +
Sbjct: 784 LVRTRSQWIRCLQYLLVHVNTDVREAFCAQIGIFVQHPIVSCLFLSEDATEKSCERNFFN 843
Query: 244 VIKLAFTAADDPLILETLLESTAELMMAVDVHSQHXXXXXXXXVEQLDNPHVTVRMNASR 303
+I+ + AA D L+++TLLE+TAE+M+AVDV S+ ++QLD+P++ VR+NAS+
Sbjct: 844 LIEHSLAAAKDLLVIQTLLETTAEVMVAVDVTSELFLICLFLLIDQLDHPNLIVRINASK 903
Query: 304 LIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVK 363
LI +SC+ H+KGG L+S A I NELFD LSVRL SRP +VREFAEA GVETEELV+
Sbjct: 904 LINRSCYIHVKGGFATLLSTASHIQNELFDNLSVRLTSRPNVVREFAEAVLGVETEELVR 963
Query: 364 KMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLL 423
KM+PAVLPKL+V Q+N QA N +NELAK ++TD+VPLIV W+P+VLAFAL+Q +++ LL
Sbjct: 964 KMVPAVLPKLLVYWQENAQAANTLNELAKLIDTDVVPLIVNWLPRVLAFALNQEEDKNLL 1023
Query: 424 SALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLT 483
S L+ Y Q GSDNQEIFAAALPALLDEL+CFVD D+ E + RL R+P I+K+S VLT
Sbjct: 1024 SVLQLYHSQIGSDNQEIFAAALPALLDELVCFVDIADTPETDRRLQRLPDAIKKISKVLT 1083
Query: 484 GNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILV 543
EDLPGFL+NHFVGLLNSIDRKMLHA+D+ LQKQALKRI++LIEM+G +L+TYVPK++V
Sbjct: 1084 NAEDLPGFLQNHFVGLLNSIDRKMLHADDIFLQKQALKRIKLLIEMMGHYLSTYVPKLMV 1143
Query: 544 LLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLL 603
LLMHAI K++LQ EGL VLHFF +L+ VSPSS K+VISQ+FAALIPFLE++K+ P V L
Sbjct: 1144 LLMHAIEKDALQSEGLLVLHFFTRKLADVSPSSIKYVISQIFAALIPFLEKEKEGPHVYL 1203
Query: 604 NKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDG 663
++VVKILE+LVLKNR I+K+HI EFPLLPSI +L E+N AIQEARG M+LKDQL V+G
Sbjct: 1204 DEVVKILEELVLKNRDIVKEHICEFPLLPSIPSLGELNNAIQEARGLMSLKDQLRDIVNG 1263
Query: 664 LNHENLNVRYMVVCEXXXXXXXXXEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTV 723
+ HENLNVRYMV CE EDV ALI GE SD+++LS+LI+ LL+GCAEESRT
Sbjct: 1264 MKHENLNVRYMVACELSKLLYNRNEDVAALIAGELVSDMEILSSLITYLLQGCAEESRTT 1323
Query: 724 VGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAAPDT 783
VGQ+LKLVCADCLGA+GA+DPAKV+ SC RFKI+CSDDDLIFELI KHLARAFRAA DT
Sbjct: 1324 VGQRLKLVCADCLGAIGAIDPAKVRVASCSRFKIQCSDDDLIFELIHKHLARAFRAAQDT 1383
Query: 784 IIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNMR 843
IIQDSAALAIQELLKIAGCE SL NV VL +EH+ V SG+ +E+ R
Sbjct: 1384 IIQDSAALAIQELLKIAGCEPSLAGNVV-----VLTPQEHVQVNVSGSRRCGGNNEVKDR 1438
Query: 844 GRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTVHA 903
G+K WDRFS YVKE+IAPCLTSRFQLP+ SD S GPIY PSMSFRRW+ YWIRKLT A
Sbjct: 1439 GQKLWDRFSNYVKELIAPCLTSRFQLPNVSDPGSAGPIYRPSMSFRRWLSYWIRKLTAFA 1498
Query: 904 TGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASDH 963
TGSR SIF ACRGIVRHDMQTA YLLPYLVL+ VCHGTE ARL I++EILSVLDAAAS++
Sbjct: 1499 TGSRVSIFAACRGIVRHDMQTATYLLPYLVLDVVCHGTEAARLSISEEILSVLDAAASEN 1558
Query: 964 SGASVHGIS-GQSEVCIQAIFTLLDNLGQWVDDVKQELALSESLTS---KQQGSKSKHPA 1019
SG +++ GQSEVC+QA+FTLLDNLGQWVDDVKQ +ALS SL S +Q KSK
Sbjct: 1559 SGVTINSFGVGQSEVCVQAVFTLLDNLGQWVDDVKQGVALSSSLQSSGGRQVAPKSKDQV 1618
Query: 1020 SSM--HQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPA 1077
S+ QD LL QC+YV LL AIPKVTLARASFRCQAYARSLMY ESHVR KSGS NPA
Sbjct: 1619 SNSTTEQDHLLVQCKYVLELLLAIPKVTLARASFRCQAYARSLMYLESHVRGKSGSLNPA 1678
Query: 1078 AEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSC 1137
AEK+G FE+ DVS LM IYS LDEPDGLSG A L KSL+LQD+LL NKKSGNWA+VFT+C
Sbjct: 1679 AEKTGIFENADVSSLMGIYSCLDEPDGLSGFASLSKSLNLQDQLLINKKSGNWADVFTAC 1738
Query: 1138 EQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197
EQALQMEPTSVQRHSDVLNCLLNMCH Q MVTHVDGLISR+P+YKKTWC QGVQAAWRLG
Sbjct: 1739 EQALQMEPTSVQRHSDVLNCLLNMCHHQTMVTHVDGLISRVPEYKKTWCTQGVQAAWRLG 1798
Query: 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIA 1257
+WDLMDEYL GAD EGLL SSS+SNASFD DVAKIL AMMKKD +SV++ I +SKQ LIA
Sbjct: 1799 KWDLMDEYLDGADAEGLLFSSSDSNASFDRDVAKILHAMMKKDQYSVAEGIAISKQALIA 1858
Query: 1258 PLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENR 1317
PLAAAGMDSYTRAYPF+VKLHLL+ELEDF A+L DS+LEKSF SD FSK + NWENR
Sbjct: 1859 PLAAAGMDSYTRAYPFVVKLHLLRELEDFQAVLNGDSYLEKSFSTSDQVFSKAVDNWENR 1918
Query: 1318 LKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQA 1377
L++TQ SLW REPLLAFRR+VFGASGLGA+VGNCWLQYAKLCRLAGHYETA RAILEAQA
Sbjct: 1919 LRFTQSSLWTREPLLAFRRLVFGASGLGAQVGNCWLQYAKLCRLAGHYETAHRAILEAQA 1978
Query: 1378 SGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGXXXXXXXXXXXXXXXXXXXX 1437
SGAPNVHMEKAKLLW T+RSD AI ELQQ+LLN P VV
Sbjct: 1979 SGAPNVHMEKAKLLWITKRSDSAIIELQQSLLNMPEGVVDSTVISSINSLLMAPPNPEPT 2038
Query: 1438 XXXTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497
TQ+ EK+D+AKTLLLYS+WIH++GQKQK+DV+ LY++V+EL P WEKGYF++AKY
Sbjct: 2039 VRNTQSFKEKKDVAKTLLLYSKWIHHSGQKQKKDVLNLYTQVKELLP-WEKGYFHLAKYY 2097
Query: 1498 DDVLVDARKRQEENSEIGPS-------------EKRWWFYVPDVLLFYAKGLHRGHKNLF 1544
D++ VDARK Q+E+S + EK W Y+ + FYAK LH GHKNLF
Sbjct: 2098 DELYVDARKCQQESSVFSSAGSKKGSVSSNLSTEKAGWDYLFKGMYFYAKALHSGHKNLF 2157
Query: 1545 QALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVS 1604
QALPRLLTLWFDFG+I + +GS+ NK+LK+ + K+MS+MRGCLKDLP YQWLTVLPQLVS
Sbjct: 2158 QALPRLLTLWFDFGTIYKTSGSAGNKELKSTHMKIMSLMRGCLKDLPTYQWLTVLPQLVS 2217
Query: 1605 RICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSXXXXXXXXXXXXXXGSAH 1664
RICHQN + V +VK+IITSVL Q+PQQGLWIMAAVSKST+P+ G
Sbjct: 2218 RICHQNADTVLMVKNIITSVLHQFPQQGLWIMAAVSKSTVPARREAAAEIIQGARKGFNQ 2277
Query: 1665 GNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTV 1724
+ +NLF QF SL DH IKLCFH GQ +S+ INI+TEFSALKRMMPL IIMPIQQSLT+
Sbjct: 2278 SDRGHNLFIQFASLTDHFIKLCFHGGQPRSKVINIATEFSALKRMMPLDIIMPIQQSLTI 2337
Query: 1725 TLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCK 1784
+LP N E S+ +FS SDLPTISGIADEAEILSSLQRPKKI+LLG+DGI+ PFLCK
Sbjct: 2338 SLPAFHMNNNERHSASVFSGSDLPTISGIADEAEILSSLQRPKKIILLGNDGIEYPFLCK 2397
Query: 1785 PKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLR 1844
PKDDLRKD+RMMEFTAMINRLLSKYPESRRRKLYIRTFAV PLTEDCG+VEWVPHTRGLR
Sbjct: 2398 PKDDLRKDARMMEFTAMINRLLSKYPESRRRKLYIRTFAVAPLTEDCGLVEWVPHTRGLR 2457
Query: 1845 NILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFS 1904
+ILQDIYISCGKFDRQKTNPQIKRIYDQ K E EMLKTKILPMFPPVFHKWFLTTFS
Sbjct: 2458 HILQDIYISCGKFDRQKTNPQIKRIYDQCAVK-KEYEMLKTKILPMFPPVFHKWFLTTFS 2516
Query: 1905 EPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL 1964
EPAAWFR+RVAYAHTTAVWSMVGHIVGLGDRHGENILFDST+GDCVHVDFSCLFDKGL L
Sbjct: 2517 EPAAWFRSRVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTSGDCVHVDFSCLFDKGLQL 2576
Query: 1965 EKPELVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEW 2024
EKPELVPFRLTQNMIDGLGITGYEG F+RVCEITL+VLRTHRETLMS+LETFIHDPLVEW
Sbjct: 2577 EKPELVPFRLTQNMIDGLGITGYEGIFMRVCEITLTVLRTHRETLMSILETFIHDPLVEW 2636
Query: 2025 TKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKN 2084
TKSHKSSGVEV+NPHAQRAIS+IEARLQG VVGV PL VEGQARRLIA+AVS +N
Sbjct: 2637 TKSHKSSGVEVQNPHAQRAISSIEARLQGVVVGV------PLPVEGQARRLIADAVSLEN 2690
Query: 2085 LGKMYIWWMPWF 2096
LGKMYIWWMPWF
Sbjct: 2691 LGKMYIWWMPWF 2702
|
|
| UNIPROTKB|F1NGW1 Gga.21455 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1246 (443.7 bits), Expect = 6.8e-209, Sum P(4) = 6.8e-209
Identities = 272/661 (41%), Positives = 385/661 (58%)
Query: 1452 KTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL--VDARKRQE 1509
+ LL R++ T + V+ Y V L P WE G+FY+AKY D ++ V K ++
Sbjct: 2024 RATLLVGRFMEETANFESNAVMKKYKDVTLLLPEWEDGHFYLAKYYDKLMPMVTDNKMEK 2083
Query: 1510 ENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSI---CQRAGS 1566
+ I R+ ++ + + L G++ ++Q++PR+L+LW DFG+ C +A
Sbjct: 2084 QGDLI-----RY------IVHHFGRSLQYGNQFIYQSMPRMLSLWLDFGAKAYECDKASR 2132
Query: 1567 SSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLR 1626
S +KN K+ ++ L YQ+LT QL+SRICH ++E+ ++ I+ V
Sbjct: 2133 SERVQMKNDLAKINKVITEHTNQLAPYQFLTAFSQLISRICHSHDEVFAVLMVIVAKVFL 2192
Query: 1627 QYPQQGLWIMAAVSKSTIPSXXXXXXXXXXXXXXGSAHGNSANNLFGQFTSLIDHLIKLC 1686
YPQQ +W+M AVSKS+ P S G T L D L++LC
Sbjct: 2193 AYPQQAMWMMTAVSKSSYPMRVNRCKEILNKAINMK---ESLGKFIGDATRLTDKLLELC 2249
Query: 1687 FHAGQSKSRTINISTEFSALKRMMP----LGIIMPIQQSLTVTLPPQDANLTESPSSDIF 1742
S ++++ F LKR++ I++P+Q + TLP T + + D F
Sbjct: 2250 NKPVDGNSSALSMNIHFRTLKRLVEEHTFSQILIPLQSVMIPTLPSIPG--THA-NHDPF 2306
Query: 1743 SASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMI 1802
I+G D EIL+SLQ+PKKI L GSDG +CKPKDDLRKD R+MEF ++I
Sbjct: 2307 PGC-WAYIAGFDDTVEILASLQKPKKITLKGSDGKSYIMMCKPKDDLRKDCRLMEFNSLI 2365
Query: 1803 NRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKT 1862
N+ L K ESRRR+L+IRT+AVIPL ++CG++EWV +T GLRNIL +Y G + T
Sbjct: 2366 NKCLRKDAESRRRELHIRTYAVIPLNDECGIIEWVNNTAGLRNILIKLYKEKGIY---MT 2422
Query: 1863 NPQIKRIYDQFQGKIPED-EMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTA 1921
++++ +PE +M K +LP PPVFH+WFL TF +P +W+ +R AY + A
Sbjct: 2423 GKELRQHMLPKSAPLPEKLKMFKEVLLPRHPPVFHEWFLRTFPDPTSWYNSRSAYCRSVA 2482
Query: 1922 VWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDG 1981
V SMVG+I+GLGDRHGENILFDS TG+CVHVDF+CLF+KG E PE+VPFRLT NM++G
Sbjct: 2483 VMSMVGYILGLGDRHGENILFDSLTGECVHVDFNCLFNKGETFEVPEIVPFRLTHNMVNG 2542
Query: 1982 LGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEW-------TKSHKSSGVE 2034
+G G EG F R CE+T+ ++R RE LMSVL+TF+HDPLVEW TK+ + E
Sbjct: 2543 MGPMGTEGLFRRACEVTMRLMRDQREPLMSVLKTFLHDPLVEWSKPVKGNTKAQVNETGE 2602
Query: 2035 VENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGKMYIWWMP 2094
V N A+ + +IE RLQG + LPL++EG LI EA L +MY+ W P
Sbjct: 2603 VVNEKAKTHVLDIEQRLQGVIKTRNRIKGLPLSIEGHVHYLIQEASDDNLLCQMYMGWAP 2662
Query: 2095 W 2095
+
Sbjct: 2663 Y 2663
|
|
| MGI|MGI:108028 Atr "ataxia telangiectasia and Rad3 related" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1240 (441.6 bits), Expect = 3.5e-208, Sum P(5) = 3.5e-208
Identities = 273/661 (41%), Positives = 389/661 (58%)
Query: 1452 KTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL--VDARKRQE 1509
+ LL R++ T + V+ Y V P WE G+FY+AKY D ++ V K ++
Sbjct: 1995 RATLLVGRFMEETANFESNAVMKKYKDVTLFLPEWEDGHFYLAKYYDKLMPMVTDNKMEK 2054
Query: 1510 ENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSIC---QRAGS 1566
+ I R+ ++L + + L G++ ++Q++PR+L+LW DFG+ ++ G
Sbjct: 2055 QGDLI-----RY------IVLHFGRSLQYGNQFIYQSMPRMLSLWLDFGAKAYEWEKGGR 2103
Query: 1567 SSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLR 1626
S ++N K+ S++ L YQ+LT QL+SRICH ++E+ ++ II V
Sbjct: 2104 SDRLQMRNDLAKINSVLTEHTNRLAPYQFLTAFSQLISRICHSHDEVFVVLMEIIAKVFL 2163
Query: 1627 QYPQQGLWIMAAVSKSTIPSXXXXXXXXXXXXXXGSAHGNSANNLFGQFTSLIDHLIKLC 1686
YPQQ +W+M AVSKS+ P S G T L D L++LC
Sbjct: 2164 AYPQQAMWMMTAVSKSSYPMRVNRCKEILTKAIHMK---KSLEKFVGDATRLTDKLLELC 2220
Query: 1687 FHAGQSKSRTINISTEFSALKRMM--PL--GIIMPIQQSLTVTLPPQDANLTESPSSDIF 1742
+ + T+++ST F LKR++ P I++P+Q + TLP + L + D F
Sbjct: 2221 NKSVDGSNSTLSMSTHFKMLKRLVEDPTFSEILIPLQSVMIPTLP---SVLGAHANHDPF 2277
Query: 1743 SASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMI 1802
++G D EILSSLQ+PKKI L GSDG +CKPKDDLRKD R+MEF ++I
Sbjct: 2278 PGH-WAYLAGFDDVVEILSSLQKPKKISLKGSDGKFYIMMCKPKDDLRKDCRLMEFNSLI 2336
Query: 1803 NRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKT 1862
N+ L K ESRRR+L+IRT+AVIPL ++CG++EWV +T GLR IL IY G + T
Sbjct: 2337 NKSLRKDAESRRRELHIRTYAVIPLNDECGIIEWVNNTAGLRPILTKIYKEKGVY---MT 2393
Query: 1863 NPQIKRIYDQFQGKIPED-EMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTA 1921
++++ + E ++ + +LP PPVFH+WFL TF +P +W+ +R AY +TA
Sbjct: 2394 GKELRQCMLPKSAALSEKLKVFQELLLPRHPPVFHEWFLRTFPDPTSWYSSRSAYCRSTA 2453
Query: 1922 VWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDG 1981
V SMVG+I+GLGDRHGENILFDS TG+CVHVDF+CLF+KG E PE+VPFRLT NM++G
Sbjct: 2454 VMSMVGYILGLGDRHGENILFDSFTGECVHVDFNCLFNKGETFEVPEIVPFRLTHNMVNG 2513
Query: 1982 LGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTK---SHKSSGV----E 2034
+G G EG F R CE+TL ++R RE LMSVL+TF+HDPLVE +K H + + E
Sbjct: 2514 MGPMGTEGLFRRACEVTLRLMRDQREPLMSVLKTFLHDPLVEGSKPVKGHSKAPLNETGE 2573
Query: 2035 VENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGKMYIWWMP 2094
V N A+ + +IE RLQG + LPL++EG LI EA L +MY+ W P
Sbjct: 2574 VVNEKAKTHVLDIEQRLQGVIKTRNRVTGLPLSIEGHVHYLIQEATDENLLCQMYLGWTP 2633
Query: 2095 W 2095
+
Sbjct: 2634 Y 2634
|
|
| UNIPROTKB|Q13535 ATR "Serine/threonine-protein kinase ATR" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1255 (446.8 bits), Expect = 3.6e-204, Sum P(4) = 3.6e-204
Identities = 269/661 (40%), Positives = 388/661 (58%)
Query: 1452 KTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL--VDARKRQE 1509
+ +LL R++ T + ++ Y V P WE G+FY+AKY D ++ V K ++
Sbjct: 2001 RAMLLVGRFMEETANFESNAIMKKYKDVTACLPEWEDGHFYLAKYYDKLMPMVTDNKMEK 2060
Query: 1510 ENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSIC---QRAGS 1566
+ I R+ ++L + + L G++ ++Q++PR+LTLW D+G+ ++AG
Sbjct: 2061 QGDLI-----RY------IVLHFGRSLQYGNQFIYQSMPRMLTLWLDYGTKAYEWEKAGR 2109
Query: 1567 SSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLR 1626
S ++N GK+ ++ L YQ+LT QL+SRICH ++E+ ++ II V
Sbjct: 2110 SDRVQMRNDLGKINKVITEHTNYLAPYQFLTAFSQLISRICHSHDEVFVVLMEIIAKVFL 2169
Query: 1627 QYPQQGLWIMAAVSKSTIPSXXXXXXXXXXXXXXGSAHGNSANNLFGQFTSLIDHLIKLC 1686
YPQQ +W+M AVSKS+ P S G T L D L++LC
Sbjct: 2170 AYPQQAMWMMTAVSKSSYPMRVNRCKEILNKAIHMK---KSLEKFVGDATRLTDKLLELC 2226
Query: 1687 FHAGQSKSRTINISTEFSALKRMMPLG----IIMPIQQSLTVTLPPQDANLTESPSSDIF 1742
S T+++ST F LK+++ I++P+Q + TLP S + F
Sbjct: 2227 NKPVDGSSSTLSMSTHFKMLKKLVEEATFSEILIPLQSVMIPTLPSILGTHANHASHEPF 2286
Query: 1743 SASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMI 1802
I+G D EIL+SLQ+PKKI L GSDG +CKPKDDLRKD R+MEF ++I
Sbjct: 2287 PGH-WAYIAGFDDMVEILASLQKPKKISLKGSDGKFYIMMCKPKDDLRKDCRLMEFNSLI 2345
Query: 1803 NRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKT 1862
N+ L K ESRRR+L+IRT+AVIPL ++CG++EWV +T GLR IL +Y G + T
Sbjct: 2346 NKCLRKDAESRRRELHIRTYAVIPLNDECGIIEWVNNTAGLRPILTKLYKEKGVY---MT 2402
Query: 1863 NPQIKRIYDQFQGKIPED-EMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTA 1921
++++ + E ++ + +LP PP+FH+WFL TF +P +W+ +R AY +TA
Sbjct: 2403 GKELRQCMLPKSAALSEKLKVFREFLLPRHPPIFHEWFLRTFPDPTSWYSSRSAYCRSTA 2462
Query: 1922 VWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDG 1981
V SMVG+I+GLGDRHGENILFDS TG+CVHVDF+CLF+KG E PE+VPFRLT NM++G
Sbjct: 2463 VMSMVGYILGLGDRHGENILFDSLTGECVHVDFNCLFNKGETFEVPEIVPFRLTHNMVNG 2522
Query: 1982 LGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTK---SHKSSGV----E 2034
+G G EG F R CE+T+ ++R RE LMSVL+TF+HDPLVEW+K H + + E
Sbjct: 2523 MGPMGTEGLFRRACEVTMRLMRDQREPLMSVLKTFLHDPLVEWSKPVKGHSKAPLNETGE 2582
Query: 2035 VENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGKMYIWWMP 2094
V N A+ + +IE RLQG + LPL++EG LI EA L +MY+ W P
Sbjct: 2583 VVNEKAKTHVLDIEQRLQGVIKTRNRVTGLPLSIEGHVHYLIQEATDENLLCQMYLGWTP 2642
Query: 2095 W 2095
+
Sbjct: 2643 Y 2643
|
|
| UNIPROTKB|J9P2H2 ATR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1242 (442.3 bits), Expect = 2.0e-203, Sum P(4) = 2.0e-203
Identities = 270/662 (40%), Positives = 389/662 (58%)
Query: 1452 KTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL--VDARKRQE 1509
+ +LL R++ T + V+ Y V P WE G+FY+AKY D ++ V K ++
Sbjct: 2000 RAMLLVGRFMEETANFESNAVMKKYKDVTLFLPEWEDGHFYLAKYYDKLMPMVTDNKMEK 2059
Query: 1510 ENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSIC---QRAGS 1566
+ I R+ ++L + + L G++ ++Q++PR+L+LW DFG+ ++AG
Sbjct: 2060 QGDLI-----RY------IVLHFGRSLQYGNQFIYQSMPRMLSLWLDFGAKAYEWEKAGR 2108
Query: 1567 SSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLR 1626
S ++N K+ ++ L YQ+LT QL+SRICH ++E+ ++ II V
Sbjct: 2109 SDRVQMRNDLAKINKVITEHTNHLAPYQFLTAFSQLISRICHSHDEVFVVLMEIIAKVFL 2168
Query: 1627 QYPQQGLWIMAAVSKSTIPSXXXXXXXXXXXXXXGSAHGNSANNLFGQFTSLIDHLIKLC 1686
YPQQ +W+M AVSKS+ P S G T L D L++LC
Sbjct: 2169 AYPQQAMWMMTAVSKSSYPMRVNRCKEILNKAIHMK---KSLEKFIGDATRLTDKLLELC 2225
Query: 1687 FHAGQSKSRTINISTEFSALKRMM--PL--GIIMPIQQSLTVTLPP-QDANLTESPSSDI 1741
S T+++ST F LK+++ P I++P+Q + TLP A+ P
Sbjct: 2226 NKPVDGSSSTLSMSTHFKMLKKLVEEPTFSEILIPLQSVMIPTLPSIPGAHANHEPFPGH 2285
Query: 1742 FSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAM 1801
++ I+ D EIL+SLQ+PKKI L GSDG +CKPKDDLRKD R+MEF ++
Sbjct: 2286 WAY-----IASFDDMVEILASLQKPKKISLKGSDGKFYIMMCKPKDDLRKDCRLMEFNSL 2340
Query: 1802 INRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQK 1861
IN+ L K ESRRR+L+IRT+AVIPL ++CG++EWV +T GLR IL +Y G +
Sbjct: 2341 INKCLRKDAESRRRELHIRTYAVIPLNDECGIIEWVNNTAGLRPILTKLYKEKGVY---M 2397
Query: 1862 TNPQIKRIYDQFQGKIPED-EMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTT 1920
T ++++ + E ++ + +LP PPVFH+WFL TF +P +W+ +R AY +T
Sbjct: 2398 TGKELRQCMLPKAAALSEKLKVFREFLLPRHPPVFHEWFLRTFPDPTSWYSSRSAYCRST 2457
Query: 1921 AVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMID 1980
AV SMVG+I+GLGDRHGENILFDS TG+CVHVDF+CLF+KG E PE+VPFRLT NM++
Sbjct: 2458 AVMSMVGYILGLGDRHGENILFDSLTGECVHVDFNCLFNKGETFEVPEIVPFRLTHNMVN 2517
Query: 1981 GLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTK---SHKSSGV---- 2033
G+G G EG F R CE+T+ ++R RE LMSVL+TF+HDPLVEW+K H + +
Sbjct: 2518 GMGPMGTEGLFRRACEVTMRLMRDQREPLMSVLKTFLHDPLVEWSKPVKGHSKAPLNETG 2577
Query: 2034 EVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGKMYIWWM 2093
EV N A+ + +IE RLQG + LPL++EG LI EA L +MY+ W
Sbjct: 2578 EVVNEKAKTHVLDIEQRLQGVIKTRNRVTGLPLSIEGHVHYLIQEATDENLLCQMYLGWT 2637
Query: 2094 PW 2095
P+
Sbjct: 2638 PY 2639
|
|
| UNIPROTKB|E2QXA4 ATR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1242 (442.3 bits), Expect = 2.1e-203, Sum P(4) = 2.1e-203
Identities = 270/662 (40%), Positives = 389/662 (58%)
Query: 1452 KTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL--VDARKRQE 1509
+ +LL R++ T + V+ Y V P WE G+FY+AKY D ++ V K ++
Sbjct: 2010 RAMLLVGRFMEETANFESNAVMKKYKDVTLFLPEWEDGHFYLAKYYDKLMPMVTDNKMEK 2069
Query: 1510 ENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSIC---QRAGS 1566
+ I R+ ++L + + L G++ ++Q++PR+L+LW DFG+ ++AG
Sbjct: 2070 QGDLI-----RY------IVLHFGRSLQYGNQFIYQSMPRMLSLWLDFGAKAYEWEKAGR 2118
Query: 1567 SSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLR 1626
S ++N K+ ++ L YQ+LT QL+SRICH ++E+ ++ II V
Sbjct: 2119 SDRVQMRNDLAKINKVITEHTNHLAPYQFLTAFSQLISRICHSHDEVFVVLMEIIAKVFL 2178
Query: 1627 QYPQQGLWIMAAVSKSTIPSXXXXXXXXXXXXXXGSAHGNSANNLFGQFTSLIDHLIKLC 1686
YPQQ +W+M AVSKS+ P S G T L D L++LC
Sbjct: 2179 AYPQQAMWMMTAVSKSSYPMRVNRCKEILNKAIHMK---KSLEKFIGDATRLTDKLLELC 2235
Query: 1687 FHAGQSKSRTINISTEFSALKRMM--PL--GIIMPIQQSLTVTLPP-QDANLTESPSSDI 1741
S T+++ST F LK+++ P I++P+Q + TLP A+ P
Sbjct: 2236 NKPVDGSSSTLSMSTHFKMLKKLVEEPTFSEILIPLQSVMIPTLPSIPGAHANHEPFPGH 2295
Query: 1742 FSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAM 1801
++ I+ D EIL+SLQ+PKKI L GSDG +CKPKDDLRKD R+MEF ++
Sbjct: 2296 WAY-----IASFDDMVEILASLQKPKKISLKGSDGKFYIMMCKPKDDLRKDCRLMEFNSL 2350
Query: 1802 INRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQK 1861
IN+ L K ESRRR+L+IRT+AVIPL ++CG++EWV +T GLR IL +Y G +
Sbjct: 2351 INKCLRKDAESRRRELHIRTYAVIPLNDECGIIEWVNNTAGLRPILTKLYKEKGVY---M 2407
Query: 1862 TNPQIKRIYDQFQGKIPED-EMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTT 1920
T ++++ + E ++ + +LP PPVFH+WFL TF +P +W+ +R AY +T
Sbjct: 2408 TGKELRQCMLPKAAALSEKLKVFREFLLPRHPPVFHEWFLRTFPDPTSWYSSRSAYCRST 2467
Query: 1921 AVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMID 1980
AV SMVG+I+GLGDRHGENILFDS TG+CVHVDF+CLF+KG E PE+VPFRLT NM++
Sbjct: 2468 AVMSMVGYILGLGDRHGENILFDSLTGECVHVDFNCLFNKGETFEVPEIVPFRLTHNMVN 2527
Query: 1981 GLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTK---SHKSSGV---- 2033
G+G G EG F R CE+T+ ++R RE LMSVL+TF+HDPLVEW+K H + +
Sbjct: 2528 GMGPMGTEGLFRRACEVTMRLMRDQREPLMSVLKTFLHDPLVEWSKPVKGHSKAPLNETG 2587
Query: 2034 EVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGKMYIWWM 2093
EV N A+ + +IE RLQG + LPL++EG LI EA L +MY+ W
Sbjct: 2588 EVVNEKAKTHVLDIEQRLQGVIKTRNRVTGLPLSIEGHVHYLIQEATDENLLCQMYLGWT 2647
Query: 2094 PW 2095
P+
Sbjct: 2648 PY 2649
|
|
| UNIPROTKB|Q9DE14 atr "Serine/threonine-protein kinase atr" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 1238 (440.9 bits), Expect = 1.6e-200, Sum P(4) = 1.6e-200
Identities = 266/661 (40%), Positives = 384/661 (58%)
Query: 1452 KTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL--VDARKRQE 1509
+ +LL R + T + V+ Y V L P WE G+FY+AKY D ++ V K ++
Sbjct: 2012 RAMLLVGRLMEETANFESNAVMKKYKDVTALLPEWEDGHFYLAKYYDKLMPMVTDNKMEK 2071
Query: 1510 ENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSIC---QRAGS 1566
+ I R+ ++L + + L G++ ++Q++PR+L+LW DFG+ ++AG
Sbjct: 2072 QGDLI-----RY------IVLHFGRSLQFGNQYIYQSMPRMLSLWLDFGAKVYEWEKAGR 2120
Query: 1567 SSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLR 1626
+ +KN K+ ++ L YQ+LT QL+SRICH ++E+ ++ I+ V
Sbjct: 2121 ADRLQMKNELMKINKVISDHKNQLAPYQFLTAFSQLISRICHSHDEVFAVLMEIVAKVFV 2180
Query: 1627 QYPQQGLWIMAAVSKSTIPSXXXXXXXXXXXXXXGSAHGNSANNLFGQFTSLIDHLIKLC 1686
YPQQ +W+M AVSKS+ P S G T L D L++LC
Sbjct: 2181 AYPQQAMWMMTAVSKSSYPMRVNRCKEILEKAIHMKP---SLGKFIGDATRLTDKLLELC 2237
Query: 1687 FHAGQSKSRTINISTEFSALKRMMP----LGIIMPIQQSLTVTLPPQDANLTESPSSDIF 1742
+ T++++ F LK+++ I++P+Q + TLP A + D F
Sbjct: 2238 NKPVDGNTSTLSMNIHFKMLKKLVEETTFSEILIPLQSVMIPTLP-STAGKRDHADHDPF 2296
Query: 1743 SASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMI 1802
+SG D EIL SLQ+PKKI L GSDG +CKPKDDLRKD R+MEF ++I
Sbjct: 2297 PGH-WAYLSGFDDAVEILPSLQKPKKISLKGSDGKSYIMMCKPKDDLRKDCRLMEFNSLI 2355
Query: 1803 NRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKT 1862
N+ L K ESRRR+L+IRT+AVIPL ++CG++EWV +T G RNIL +Y G + K
Sbjct: 2356 NKCLRKDAESRRRELHIRTYAVIPLNDECGIIEWVNNTAGFRNILIKLYKEKGIYMGGK- 2414
Query: 1863 NPQIKRIYDQFQGKIPED-EMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTA 1921
++++ + E ++ K +LP PP+FH+WFL TF +P +W+ +R AY +TA
Sbjct: 2415 --ELRQCMLPKSAPLQEKLKVFKEALLPRHPPLFHEWFLRTFPDPTSWYNSRSAYCRSTA 2472
Query: 1922 VWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDG 1981
V SMVG+I+GLGDRHGENILFDS TG+CVHVDF+CLF+KG E PE+VPFRLT NM++G
Sbjct: 2473 VMSMVGYILGLGDRHGENILFDSLTGECVHVDFNCLFNKGETFEVPEIVPFRLTHNMVNG 2532
Query: 1982 LGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGV-------E 2034
+G G EG F R CE+ + ++R RE+LMSVL+ F+HDPLVEW+K + S E
Sbjct: 2533 MGPMGTEGLFRRACEVIMRLMREQRESLMSVLKPFLHDPLVEWSKPARGSSKGQVNETGE 2592
Query: 2035 VENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGKMYIWWMP 2094
V N A+ + +IE RLQG + LPL++EG LI EA L +MY+ W P
Sbjct: 2593 VMNEKAKTHVLDIEQRLQGVIKTRNRVKGLPLSIEGHVHYLIQEATDENLLSQMYLGWAP 2652
Query: 2095 W 2095
+
Sbjct: 2653 Y 2653
|
|
| ZFIN|ZDB-GENE-070912-458 atr "ataxia telangiectasia and Rad3 related" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1223 (435.6 bits), Expect = 2.5e-189, Sum P(4) = 2.5e-189
Identities = 276/675 (40%), Positives = 386/675 (57%)
Query: 1442 QTLNEKRDI---AKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498
QTL + + I +LL R++ T + ++ Y V L P WE G FY+AKY D
Sbjct: 1998 QTLTDPKRIQVKGNAMLLVGRYMEETANFESNAIMKTYKDVTTLLPEWEDGNFYLAKYYD 2057
Query: 1499 DVL--VDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFD 1556
V+ V K + + + I R+ ++ ++ K L G++ ++QA+PR+LTLW D
Sbjct: 2058 KVMPMVTDNKLERQGNLI-----RY------IVTYFGKALQFGNQYIYQAMPRMLTLWLD 2106
Query: 1557 FGSIC---QRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEI 1613
FG+ ++AG S ++ K+ S++ +L YQ+LT QL+SRICH + E+
Sbjct: 2107 FGAKVYEFEKAGRSDRVQMRTELTKINSVISDHTSNLSPYQFLTAFSQLISRICHSSNEV 2166
Query: 1614 VRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSXXXXXXXXXXXXXXGSAHGNSANNLFG 1673
++ I+ V YPQQ +W+M AVSKS+ P+ + +S G
Sbjct: 2167 FAVLMEIVAKVFLAYPQQAMWMMTAVSKSSYPTRMNRCKEILKKAI---SLNDSFMKFIG 2223
Query: 1674 QFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMM--PL--GIIMPIQQSLTVTLPPQ 1729
L D L++L S T+++S F LK+++ P I++P+Q L TLP
Sbjct: 2224 DANRLTDKLLELGNKPVDGNSSTLSMSVHFKMLKKLVEEPTFSQILIPLQSVLIPTLPST 2283
Query: 1730 DANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDL 1789
+P D F + +SG D EIL+SLQ+PKKI L GSDG +CKPKDDL
Sbjct: 2284 GG---ANPKHDAFPGHWV-YLSGFDDTVEILASLQKPKKISLKGSDGKFYTMMCKPKDDL 2339
Query: 1790 RKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQD 1849
RKD R+MEF +IN+ L K ESRRR L IRT+AVIPL E+CG++EWV T GLR+IL
Sbjct: 2340 RKDCRLMEFNCLINKSLRKDAESRRRDLRIRTYAVIPLNEECGIIEWVNKTAGLRHILTK 2399
Query: 1850 IYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKIL-PMFPPVFHKWFLTTFSEPAA 1908
+Y G + + ++K++ E L +L PPVFH+WFL TF +P +
Sbjct: 2400 LYKEKGIY---VSGTELKKLILPKTAPFQEKLKLHKDVLCARHPPVFHEWFLRTFPDPTS 2456
Query: 1909 WFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPE 1968
W+ +R AY +TAV SMVG+I+GLGDRHGENILFDS TG+CVHVDF+CLF+KG + PE
Sbjct: 2457 WYNSRSAYCRSTAVMSMVGYILGLGDRHGENILFDSFTGECVHVDFNCLFNKGETFDVPE 2516
Query: 1969 LVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSH 2028
+VPFRLTQNM+ +G G EG F + CE+ L ++R RE LMSVL+TF+HDPLVEW+K
Sbjct: 2517 VVPFRLTQNMVHAMGPMGTEGLFRQACEVILRLMRDQREPLMSVLKTFLHDPLVEWSKPV 2576
Query: 2029 KS--------SGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAV 2080
K SG E+ N A+ + +IE RLQG + LPL++EG LI EA
Sbjct: 2577 KGFSKTQVNESG-EILNEKAKTHVLDIEQRLQGVIKNRNKVMGLPLSIEGHVHYLIQEAT 2635
Query: 2081 SHKNLGKMYIWWMPW 2095
L MY+ W P+
Sbjct: 2636 DDNLLCMMYLGWGPY 2650
|
|
| UNIPROTKB|F1MLY7 ATR "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1249 (444.7 bits), Expect = 5.0e-180, Sum P(4) = 5.0e-180
Identities = 271/662 (40%), Positives = 390/662 (58%)
Query: 1452 KTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL--VDARKRQE 1509
+ LL R++ T + V+ Y V P WE G+FY+AKY D ++ V K ++
Sbjct: 1986 RATLLVGRFMEETANFESNAVMKKYKDVTLFLPEWEDGHFYLAKYYDKLMPMVTDNKMEK 2045
Query: 1510 ENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSIC---QRAGS 1566
+ I R+ +LL + + L G++ ++Q++PR+L+LW DFG+ ++AG
Sbjct: 2046 QGDLI-----RY------ILLHFGRSLQYGNQFIYQSMPRMLSLWLDFGAKAYEWEKAGR 2094
Query: 1567 SSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLR 1626
S ++N K+ ++ L YQ+LT QL+SRICH ++E+ ++ II VL
Sbjct: 2095 SDRVQMRNDLVKINKVITEHTNQLAPYQFLTAFSQLISRICHSHDEVFVVLMEIIAKVLL 2154
Query: 1627 QYPQQGLWIMAAVSKSTIPSXXXXXXXXXXXXXXGSAHGNSANNLFGQFTSLIDHLIKLC 1686
YPQQ +W+M AVSKS+ P S G T L D L++LC
Sbjct: 2155 AYPQQAMWMMTAVSKSSYPMRVNRCKEILNKAIQMK---KSLEKFVGDATRLTDKLLELC 2211
Query: 1687 FHAGQSKSRTINISTEFSALKRMMPLG----IIMPIQQSLTVTLPP-QDANLTESPSSDI 1741
+ S T+++ST F LK+++ I++P+Q + TLP A+ P
Sbjct: 2212 NKSVDGSSSTLSMSTHFKMLKKLVEEATFSEILIPLQSVMIPTLPSIPGAHANHEPFPGH 2271
Query: 1742 FSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAM 1801
++ I+G D EIL+SLQ+PKKI L GSDG +CKPKDDLRKD R+MEF ++
Sbjct: 2272 WAY-----IAGFDDTVEILASLQKPKKISLKGSDGKFYIMMCKPKDDLRKDCRLMEFNSL 2326
Query: 1802 INRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQK 1861
IN+ L K ESRRR+L+IRT+AVIPL ++CG++EWV +T GLR IL +Y G +
Sbjct: 2327 INKCLRKDAESRRRELHIRTYAVIPLNDECGIIEWVNNTAGLRPILTKLYKEKGVY---M 2383
Query: 1862 TNPQIKRIYDQFQGKIPED-EMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTT 1920
T ++++ + E ++ + +LP PPVFH+WFL TF +P +W+ +R AY +T
Sbjct: 2384 TGKELRQCMLPKSAALSEKLKVFQEFLLPRHPPVFHEWFLRTFPDPTSWYSSRSAYCRST 2443
Query: 1921 AVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMID 1980
AV SMVG+I+GLGDRHGENILFDS TG+CVHVDF+CLF+KG E PE+VPFRLT NM++
Sbjct: 2444 AVMSMVGYILGLGDRHGENILFDSLTGECVHVDFNCLFNKGETFEVPEIVPFRLTHNMVN 2503
Query: 1981 GLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTK---SHKSSGV---- 2033
G+G G EG F R CE+T+ ++R RE LMSVL+TF+HDPLVEW+K H + +
Sbjct: 2504 GMGPMGTEGLFRRACEVTMRLMRDQREPLMSVLKTFLHDPLVEWSKPVKGHSKAALNETG 2563
Query: 2034 EVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGKMYIWWM 2093
EV N A+ + +IE RL+G + LPL++EG LI EA L +MY+ W
Sbjct: 2564 EVVNEKAKTHVLDIEQRLRGVIKTRNRVTGLPLSIEGHVHYLIQEATDENLLCQMYLGWT 2623
Query: 2094 PW 2095
P+
Sbjct: 2624 PY 2625
|
|
| UNIPROTKB|F1SKG2 ATR "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1248 (444.4 bits), Expect = 3.0e-179, Sum P(4) = 3.0e-179
Identities = 271/662 (40%), Positives = 389/662 (58%)
Query: 1452 KTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL--VDARKRQE 1509
+ +LL R++ T + V+ Y V P WE G+FY+AKY D ++ V K ++
Sbjct: 2006 RAMLLVGRFMEETANFESNAVMKKYKDVTLFLPEWEDGHFYLAKYYDKLMPMVTDNKMEK 2065
Query: 1510 ENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSIC---QRAGS 1566
+ I R+ ++L + + L G++ ++Q++PR+L+LW DFG+ ++AG
Sbjct: 2066 QGDLI-----RY------IVLHFGRSLQYGNQFIYQSMPRMLSLWLDFGAKAYEWEKAGR 2114
Query: 1567 SSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLR 1626
S ++N K+ ++ L YQ+LT QL+SRICH ++E+ ++ II V
Sbjct: 2115 SDRVQMRNDLVKINKVITEHTNHLAPYQFLTAFSQLISRICHSHDEVFVVLMEIIAKVFL 2174
Query: 1627 QYPQQGLWIMAAVSKSTIPSXXXXXXXXXXXXXXGSAHGNSANNLFGQFTSLIDHLIKLC 1686
YPQQ +W+M AVSKS+ P S G T L D L++LC
Sbjct: 2175 AYPQQAMWMMTAVSKSSYPMRVNRCKEILNKAILMK---KSLEKFVGDATRLTDKLLELC 2231
Query: 1687 FHAGQSKSRTINISTEFSALKRMMPLG----IIMPIQQSLTVTLPP-QDANLTESPSSDI 1741
S T+++ST F LKR++ I++P+Q + TLP A+ P
Sbjct: 2232 NKPVDGSSSTLSMSTHFKMLKRLVEEATFSEILIPLQSVMIPTLPSIPGAHANHEPFPGH 2291
Query: 1742 FSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAM 1801
++ I+G D EIL+SLQ+PKKI L GSDG +CKPKDDLRKD R+MEF ++
Sbjct: 2292 WAY-----IAGFDDTVEILASLQKPKKISLKGSDGKFYIMMCKPKDDLRKDCRLMEFNSL 2346
Query: 1802 INRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQK 1861
IN+ L K ESRRR+L+IRT+AVIPL ++CG++EWV +T GLR IL +Y G +
Sbjct: 2347 INKCLRKDAESRRRELHIRTYAVIPLNDECGIIEWVNNTAGLRPILTKLYKEKGVY---M 2403
Query: 1862 TNPQIKRIYDQFQGKIPED-EMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTT 1920
T ++++ + E ++ + +LP PPVFH+WFL TF +P +W+ +R AY +T
Sbjct: 2404 TGKELRQCMLPKSAALSEKLKVFREFLLPRHPPVFHEWFLRTFPDPTSWYSSRSAYCRST 2463
Query: 1921 AVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMID 1980
AV SMVG+I+GLGDRHGENILFDS TG+CVHVDF+CLF+KG E PE+VPFRLT NM++
Sbjct: 2464 AVMSMVGYILGLGDRHGENILFDSLTGECVHVDFNCLFNKGETFEVPEIVPFRLTHNMVN 2523
Query: 1981 GLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTK---SHKSSGV---- 2033
G+G G EG F R CE+T+ ++R RE LMSVL+TF+HDPLVEW+K H + +
Sbjct: 2524 GMGPMGTEGLFRRACEVTMRLMRDQREPLMSVLKTFLHDPLVEWSKPVKGHSKATLNETG 2583
Query: 2034 EVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGKMYIWWM 2093
EV N A+ + +IE RLQG + LPL++EG LI EA L +MY+ W
Sbjct: 2584 EVVNEKAKTHVLDIEQRLQGVIKTRNRVTGLPLSIEGHVHYLIQEATDENLLCQMYLGWT 2643
Query: 2094 PW 2095
P+
Sbjct: 2644 PY 2645
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FKS4 | ATR_ARATH | 2, ., 7, ., 1, 1, ., 1 | 0.7040 | 0.9909 | 0.7686 | yes | no |
| Q5Z987 | ATR_ORYSJ | 2, ., 7, ., 1, 1, ., 1 | 0.6537 | 0.9823 | 0.7597 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.7.11.1 | 0.946 |
| 3rd Layer | 2.7.11 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 2096 | |||
| cd00892 | 237 | cd00892, PIKKc_ATR, ATR (Ataxia telangiectasia and | 1e-150 | |
| cd05171 | 279 | cd05171, PIKKc_ATM, Ataxia telangiectasia mutated | 2e-94 | |
| cd05164 | 222 | cd05164, PIKKc, Phosphoinositide 3-kinase-related | 2e-91 | |
| COG5032 | 2105 | COG5032, TEL1, Phosphatidylinositol kinase and pro | 2e-84 | |
| cd05169 | 280 | cd05169, PIKKc_TOR, TOR (Target of rapamycin), cat | 9e-76 | |
| smart00146 | 240 | smart00146, PI3Kc, Phosphoinositide 3-kinase, cata | 1e-72 | |
| cd00142 | 219 | cd00142, PI3Kc_like, Phosphoinositide 3-kinase (PI | 1e-63 | |
| cd05170 | 307 | cd05170, PIKKc_SMG1, Suppressor of morphogenetic e | 4e-63 | |
| pfam00454 | 233 | pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- | 9e-62 | |
| pfam02259 | 350 | pfam02259, FAT, FAT domain | 4e-55 | |
| cd05172 | 235 | cd05172, PIKKc_DNA-PK, DNA-dependent protein kinas | 3e-48 | |
| pfam08064 | 107 | pfam08064, UME, UME (NUC010) domain | 8e-26 | |
| smart00802 | 107 | smart00802, UME, Domain in UVSB PI-3 kinase, MEI-4 | 2e-21 | |
| cd05163 | 253 | cd05163, TRRAP, TRansformation/tRanscription domai | 5e-17 | |
| pfam02260 | 33 | pfam02260, FATC, FATC domain | 5e-12 | |
| cd00893 | 289 | cd00893, PI4Kc_III, Phosphoinositide 4-kinase (PI4 | 7e-10 | |
| cd05167 | 311 | cd05167, PI4Kc_III_alpha, Phosphoinositide 4-kinas | 2e-09 | |
| cd05166 | 353 | cd05166, PI3Kc_II, Phosphoinositide 3-kinase (PI3K | 5e-09 | |
| cd00896 | 350 | cd00896, PI3Kc_III, Phosphoinositide 3-kinase (PI3 | 9e-09 | |
| cd05168 | 293 | cd05168, PI4Kc_III_beta, Phosphoinositide 4-kinase | 2e-08 | |
| cd00891 | 352 | cd00891, PI3Kc, Phosphoinositide 3-kinase (PI3K), | 3e-08 | |
| cd05176 | 353 | cd05176, PI3Kc_C2_alpha, Phosphoinositide 3-kinase | 2e-05 | |
| cd05177 | 354 | cd05177, PI3Kc_C2_gamma, Phosphoinositide 3-kinase | 3e-05 | |
| cd05165 | 366 | cd05165, PI3Kc_I, Phosphoinositide 3-kinase (PI3K) | 3e-04 | |
| cd05173 | 362 | cd05173, PI3Kc_IA_beta, Phosphoinositide 3-kinase | 3e-04 | |
| cd00894 | 365 | cd00894, PI3Kc_IB_gamma, Phosphoinositide 3-kinase | 4e-04 |
| >gnl|CDD|119418 cd00892, PIKKc_ATR, ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 462 bits (1190), Expect = e-150
Identities = 170/277 (61%), Positives = 202/277 (72%), Gaps = 40/277 (14%)
Query: 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKY 1809
ISG DE EIL+SLQ+PKKI L+GSDG PFLCKPKDDLRKD+R+MEF +INRLLSK
Sbjct: 1 ISGFEDEVEILNSLQKPKKITLIGSDGNSYPFLCKPKDDLRKDARLMEFNTLINRLLSKD 60
Query: 1810 PESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRI 1869
PESRRR+LYIRT+AVIPL E+CG++EWVP+T LR+IL +IY
Sbjct: 61 PESRRRRLYIRTYAVIPLNEECGIIEWVPNTATLRSILLEIY------------------ 102
Query: 1870 YDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHI 1929
PPVFH+WFL F +P+AW +AR AY +TAV SMVG+I
Sbjct: 103 ----------------------PPVFHEWFLENFPDPSAWLKARNAYTRSTAVMSMVGYI 140
Query: 1930 VGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEG 1989
+GLGDRHGENILFDS TGD VHVDF+CLFDKG LE PE VPFRLTQNM+D +G+ G EG
Sbjct: 141 LGLGDRHGENILFDSNTGDVVHVDFNCLFDKGETLEVPERVPFRLTQNMVDAMGVLGVEG 200
Query: 1990 TFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTK 2026
F + CE+TL +LR+++ETLMSVLETFIHDPLVEW+K
Sbjct: 201 LFRKSCEVTLRLLRSNKETLMSVLETFIHDPLVEWSK 237
|
ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central role in regulating the replication checkpoint. ATR stabilizes replication forks by promoting the association of DNA polymerases with the fork. Preventing fork collapse is essential in preserving genomic integrity. ATR plays a role in normal cell growth and in response to DNA damage. Length = 237 |
| >gnl|CDD|119431 cd05171, PIKKc_ATM, Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 306 bits (786), Expect = 2e-94
Identities = 112/278 (40%), Positives = 159/278 (57%), Gaps = 2/278 (0%)
Query: 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKY 1809
+S D + PK I +GSDG K L K DD R+D+ M + ++N LL +
Sbjct: 1 VSKFKDVFTTAGGINAPKIITCVGSDGKKYKQLLKGGDDDRQDAVMEQVFQLVNTLLERN 60
Query: 1810 PESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRI 1869
E+R+RKL IRT+ V+PL+ G++EWV T L L + ++ + R
Sbjct: 61 KETRKRKLRIRTYKVVPLSPRAGILEWVDGTIPLGEYLVGATGAHERYRPGDWTARKCRK 120
Query: 1870 YDQFQGKIPEDEMLKT--KILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVG 1927
K +E LK KI F PVF +FL F +P WF R+AY + A S+VG
Sbjct: 121 AMAEVQKESNEERLKVFLKICKNFRPVFRYFFLEKFLDPQDWFERRLAYTRSVATSSIVG 180
Query: 1928 HIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGY 1987
+I+GLGDRH NIL D T + VH+D F++G +L PE VPFRLT++++DG+GITG
Sbjct: 181 YILGLGDRHANNILIDEKTAEVVHIDLGIAFEQGKILPVPETVPFRLTRDIVDGMGITGV 240
Query: 1988 EGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWT 2025
EG F R CE TL VLR +++ ++++LE ++DPL WT
Sbjct: 241 EGVFRRCCEKTLEVLRDNKDAILTILEVLLYDPLYSWT 278
|
ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transition. Patients with the human genetic disorder Ataxia telangiectasia (A-T), caused by truncating mutations in ATM, show genome instability, increased cancer risk, immunodeficiency, compromised mobility, and neurodegeneration. A-T displays clinical heterogeneity, which is correlated to the degree of retained ATM activity. Length = 279 |
| >gnl|CDD|119424 cd05164, PIKKc, Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 295 bits (757), Expect = 2e-91
Identities = 122/270 (45%), Positives = 154/270 (57%), Gaps = 48/270 (17%)
Query: 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKY 1809
I+ D IL S Q+PKKI L GSDG K FL K +DLR+D R+M+ N LL+K
Sbjct: 1 IASFDDAVRILGSKQKPKKITLTGSDGKKYLFLVKGGEDLRQDQRIMQLFQFCNTLLAKD 60
Query: 1810 PESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRI 1869
E RRRKL IRT+AVIPL G++EWV T L+
Sbjct: 61 AECRRRKLTIRTYAVIPLNSRSGLIEWVEGTTTLK------------------------- 95
Query: 1870 YDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHI 1929
PV KWF F +P WF AR Y +TAV S+VG+I
Sbjct: 96 -----------------------PVLKKWFWLQFPDPEQWFAARKNYTRSTAVMSIVGYI 132
Query: 1930 VGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEG 1989
+GLGDRH +NIL D TG+ VH+DF C+F+KG L PELVPFRLT+N+I+G+GITG EG
Sbjct: 133 LGLGDRHLDNILIDRETGEVVHIDFGCIFEKGKTLPVPELVPFRLTRNIINGMGITGVEG 192
Query: 1990 TFLRVCEITLSVLRTHRETLMSVLETFIHD 2019
F ++CE TL V R HR+TL++ LE F++D
Sbjct: 193 LFRKICEQTLEVFRKHRDTLIAFLEVFVYD 222
|
Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) domain. PIKKs have diverse functions including cell-cycle checkpoints, genome surveillance, mRNA surveillance, and translation control. Length = 222 |
| >gnl|CDD|227365 COG5032, TEL1, Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 308 bits (791), Expect = 2e-84
Identities = 142/513 (27%), Positives = 231/513 (45%), Gaps = 47/513 (9%)
Query: 1590 LPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRRE 1649
L + +L QL+SR+ +N +I ++L P S +
Sbjct: 1634 LLHLLFEPILAQLLSRLSSENNKISV-------ALLIDKPLHEERENFPSGLSLSSFQSS 1686
Query: 1650 AAAEIIQAAKKGSAHGNSANNLF-GQFTSL-IDHLIKLCFHAGQSKSRTINISTEFSALK 1707
E+I+ + + F + L + + + + R +
Sbjct: 1687 FLKELIKKSPR------KIRKKFKIDISLLNLSRKLYISVLR-SIRKRLKRLLELRLKKV 1739
Query: 1708 RMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSS-LQRP 1766
+ L + LP Q I E ++ S LQRP
Sbjct: 1740 SPKL----LLFHAFLEIKLPGQY-----------LLDKPFVLIERFEPEVSVVKSHLQRP 1784
Query: 1767 KKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIP 1826
+++ + GSDG F+ K DDLR+D ++ ++N++L K E+RRR L+IR + VIP
Sbjct: 1785 RRLTIRGSDGKLYSFIVKGGDDLRQDELALQLIRLMNKILKKDKETRRRDLWIRPYKVIP 1844
Query: 1827 LTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLK-- 1884
L+ G++EWVP++ L +IL++ + K + + K +
Sbjct: 1845 LSPGSGIIEWVPNSDTLHSILREYH----KRKNISIDQEKKLAAR-LDNLKLL-LKDEFF 1898
Query: 1885 TKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDS 1944
TK PPV + WF +F P W AR +A + AV+S++G+I+GLGDRH NIL D
Sbjct: 1899 TKATLKSPPVLYDWFSESFPNPEDWLTARTNFARSLAVYSVIGYILGLGDRHPGNILIDR 1958
Query: 1945 TTGDCVHVDF-SCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLR 2003
++G +H+DF LF+ PE VPFRLT+N+++ +G++G EG+F +CE LR
Sbjct: 1959 SSGHVIHIDFGFILFNAPGRFPFPEKVPFRLTRNIVEAMGVSGVEGSFRELCETAFRALR 2018
Query: 2004 THRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPS 2063
+ ++LM+VLE F+ DPL+EW E++N I N+ R + + A
Sbjct: 2019 KNADSLMNVLELFVRDPLIEW--RRLPCFREIQN----NEIVNVLERFRLKLSEKDAEKF 2072
Query: 2064 LPLAVEGQARRLIAEAVSHKNLGKMYIWWMPWF 2096
+ L + LI +A L MYI WMP++
Sbjct: 2073 VDLLINKSVESLITQATDPFQLATMYIGWMPFW 2105
|
Length = 2105 |
| >gnl|CDD|119429 cd05169, PIKKc_TOR, TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 252 bits (647), Expect = 9e-76
Identities = 109/293 (37%), Positives = 162/293 (55%), Gaps = 31/293 (10%)
Query: 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKY 1809
IS +++ S QRP+++ ++GSDG + FL K +DLR D R+M+ +IN LL
Sbjct: 1 ISSFDPVLKVIPSKQRPRRLTIVGSDGKEYKFLLKGHEDLRLDERVMQLFGLINTLLKND 60
Query: 1810 PESRRRKLYIRTFAVIPLTEDCGMVEWVPHT----------RGLRNILQDI------YIS 1853
E+ +R L I+T++VIPL+ + G++ WVP R RNI ++ S
Sbjct: 61 SETSKRNLSIQTYSVIPLSPNVGLIGWVPGCDTLHSLIREYRKKRNIPLNLEHRLMELKS 120
Query: 1854 CGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRAR 1913
+D K ++ + L+ KIL W + SE AW R
Sbjct: 121 APDYD--NLTLIQKLEVFEYALNNTPGDDLR-KIL---------WLKSPSSE--AWLERR 166
Query: 1914 VAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEK-PELVPF 1972
+ + AV SMVG+I+GLGDRH NI+ D TG +H+DF F+ + EK PE VPF
Sbjct: 167 TNFTRSLAVMSMVGYILGLGDRHPSNIMIDRLTGKVIHIDFGDCFEVAMHREKFPEKVPF 226
Query: 1973 RLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWT 2025
RLT+ +++ LG++G EGTF CE ++VLR ++E+LM+VLE F+HDPL+ W
Sbjct: 227 RLTRMLVNALGVSGIEGTFRTTCEDVMNVLRENKESLMAVLEAFVHDPLLSWR 279
|
TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with other proteins to form two distinct complexes, TORC1 and TORC2. TORC1 is involved in diverse growth-related functions including protein synthesis, nutrient use and transport, autophagy and stress responses. TORC2 is involved in organizing cytoskeletal structures. Length = 280 |
| >gnl|CDD|214538 smart00146, PI3Kc, Phosphoinositide 3-kinase, catalytic domain | Back alignment and domain information |
|---|
Score = 242 bits (619), Expect = 1e-72
Identities = 87/249 (34%), Positives = 134/249 (53%), Gaps = 12/249 (4%)
Query: 1781 FLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHT 1840
+ K DDLR+D R+++ ++N+LL K E+RRR L++R + VIP G++E VP++
Sbjct: 1 VIFKGGDDLRQDERVLQLLRLMNKLLQKDKETRRRDLHLRPYKVIPTGPKSGLIEVVPNS 60
Query: 1841 RGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFL 1900
L IL+ ++ +QK R + K E + T PV + WF
Sbjct: 61 TTLHEILK-------EYRKQKGKVLDLRSQTATRLKKLELFLEATG--KFPDPVLYDWFT 111
Query: 1901 TTFSEPA-AWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD 1959
F +P+ +F AR + + A +S++ +I+GLGDRH +NI+ D TG H+DF +
Sbjct: 112 KKFPDPSEDYFEARKNFTRSCAGYSVITYILGLGDRHNDNIMLD-KTGHLFHIDFGFILG 170
Query: 1960 KGLLLEKP-ELVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIH 2018
G L E VPFRLT M+D +G +GY G F +CE L LR + +MS+LE ++
Sbjct: 171 NGPKLFGFPERVPFRLTPEMVDVMGDSGYFGLFRSLCERALRALRKNSNLIMSLLELMLY 230
Query: 2019 DPLVEWTKS 2027
D L +W
Sbjct: 231 DGLPDWRSG 239
|
Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities. Length = 240 |
| >gnl|CDD|119416 cd00142, PI3Kc_like, Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 215 bits (550), Expect = 1e-63
Identities = 78/270 (28%), Positives = 124/270 (45%), Gaps = 51/270 (18%)
Query: 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKY 1809
I+ I+ S RPKK+ L+G+DG + L K DDLR+D R+++F ++N++L K
Sbjct: 1 IAIDVKICRIMPSKTRPKKLTLIGADGKEYRILFKNGDDLRQDERVLQFIRLMNKILKKE 60
Query: 1810 PESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRI 1869
L++ T++VIPL+ G++E VP + L + L
Sbjct: 61 L---GLDLFLTTYSVIPLSPRSGLIEVVPGSVTLEDDL---------------------- 95
Query: 1870 YDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHI 1929
KW + W AR + + A +S+ G+I
Sbjct: 96 --------------------------SKWLKRKSPDEDEWQEARENFISSLAGYSVAGYI 129
Query: 1930 VGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEG 1989
+G+GDRH +NI+ D TG H+DF +F K E VPFRLT ++++ LG G G
Sbjct: 130 LGIGDRHPDNIMIDLDTGKLFHIDFGFIFGKRKKFLGRERVPFRLTPDLVNALGTGGVFG 189
Query: 1990 TFLRVCEITLSVLRTHRETLMSVLETFIHD 2019
F +C + +LR H L+++L + D
Sbjct: 190 PFRSLCVKAMLILRRHAGLLLNLLSLMLRD 219
|
Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI4Ks produce PtdIns(4)P, the major precursor to important signaling phosphoinositides. PIKKs have diverse functions including cell-cycle checkpoints, genome surveillance, mRNA surveillance, and translation control. Length = 219 |
| >gnl|CDD|119430 cd05170, PIKKc_SMG1, Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 218 bits (556), Expect = 4e-63
Identities = 106/308 (34%), Positives = 157/308 (50%), Gaps = 34/308 (11%)
Query: 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKY 1809
I + IL + +PKK+ LGSDG K +L K ++DL D R+M+F +++N + +
Sbjct: 1 IESVGSTVTILPTKTKPKKLAFLGSDGKKYTYLFKGREDLHLDERIMQFLSIVNTMFASI 60
Query: 1810 PESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQK-----TNP 1864
+ + R ++V PL G+++WV L + + QK NP
Sbjct: 61 KDQESPRFRARHYSVTPLGPRSGLIQWVDGATPLFGLYKRWQQREAVLQAQKSQVGYQNP 120
Query: 1865 QIKRIY----DQFQGKIPEDEMLKTKILPMFPP-----------VFH-------KWFLT- 1901
QI I D F KI LK L + V K L
Sbjct: 121 QIPGIVPRPSDLFYNKI--TPALKAHGLSLDVSRRDWPLSVLRQVLDELMQETPKDLLAR 178
Query: 1902 ----TFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCL 1957
+ + + W+ YA +TAV SM+G+++GLGDRH +N+L D TG+ VH+D++
Sbjct: 179 ELWCSSTTSSEWWSVTQRYARSTAVMSMIGYVIGLGDRHLDNVLIDLKTGEVVHIDYNVC 238
Query: 1958 FDKGLLLEKPELVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFI 2017
F+KG L PE VPFR+TQN+ LG+TG EG F CE L ++R RETL+++LE F+
Sbjct: 239 FEKGKSLRIPEKVPFRMTQNIETALGLTGVEGVFRLSCEQVLHIMRRGRETLLTLLEAFV 298
Query: 2018 HDPLVEWT 2025
+DPLV+WT
Sbjct: 299 YDPLVDWT 306
|
SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by genome mutations and by errors during transcription and splicing. SMG-1 phosphorylates Upf1, another central component of NMD, at the C-terminus upon recognition of PTCs. The phosphorylation/dephosphorylation cycle of Upf1 is essential for promoting NMD. Length = 307 |
| >gnl|CDD|189554 pfam00454, PI3_PI4_kinase, Phosphatidylinositol 3- and 4-kinase | Back alignment and domain information |
|---|
Score = 211 bits (538), Expect = 9e-62
Identities = 79/250 (31%), Positives = 117/250 (46%), Gaps = 22/250 (8%)
Query: 1780 PFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPH 1839
PF+ K DDLR+D R+++ ++N+LLS RR + + VIPL G++EWVP+
Sbjct: 3 PFIFKGGDDLRQDERVLQLIGLMNKLLSGEGLDRR----LAAYLVIPLGPGSGLIEWVPN 58
Query: 1840 TRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWF 1899
+ L I + + G Y + L K +WF
Sbjct: 59 STTLAEIPRTYMVKKGIPLFN---------YSRKVLVFESRTALFPK------VGLLQWF 103
Query: 1900 LTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD 1959
+ F + W AR + + A S++ +I+G GDRH +NIL D TTG H+DF F
Sbjct: 104 VKHFPDAEEWGEARKNFVRSCAGMSVLDYILGNGDRHLDNILVDKTTGKLFHIDFGLCFP 163
Query: 1960 KGLLLEKPELVPFRLTQNMID---GLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETF 2016
K KPE VPFRLT+ ++ G +G EG F +CE LR + L ++L
Sbjct: 164 KAKRGPKPERVPFRLTRPFVEAMGGYDPSGDEGLFRELCETAYEALRRNLNLLTNLLLLM 223
Query: 2017 IHDPLVEWTK 2026
+ D L +W
Sbjct: 224 VEDGLPDWRS 233
|
Some members of this family probably do not have lipid kinase activity and are protein kinases, . Length = 233 |
| >gnl|CDD|216950 pfam02259, FAT, FAT domain | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 4e-55
Identities = 97/377 (25%), Positives = 155/377 (41%), Gaps = 43/377 (11%)
Query: 1189 GVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKI 1248
++AAWRLG+WD MDEYLS E AS D + L A+ + D I
Sbjct: 4 ALEAAWRLGQWDEMDEYLSSMKE-----------ASPDRSFYQALLALHRNDFDEAERYI 52
Query: 1249 GVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFS 1308
++Q+L L+A +SY RAYP +V+L L ELE+ L S +
Sbjct: 53 DKARQLLDTELSALPGESYNRAYPLLVRLQQLAELEEAIQYKSKLGDGSSESLKSIRQ-- 110
Query: 1309 KLMANWENRLKYTQPSLWAREPLLAFRRMVFGA--SGLGAEVGNCWLQYAKLCRLAGHYE 1366
W RL Q + + +L++R +V E+ WL++A L R +G +
Sbjct: 111 ----TWRKRLPGCQDDVEIWQDILSWRSLVLSLINYRGPHELAEMWLKFANLARKSGRFS 166
Query: 1367 TATRAILEAQASGA----PNVHMEKAKLLWSTRRSDGAIAELQQ---NLLNKPVEVVGST 1419
A +A+L+ PNV + AK LW+ + AI +L++ L+KPV +
Sbjct: 167 LAEKALLKLLTYDTREDLPNVVIAYAKYLWAKGQQQEAIQKLREFVSCYLSKPVGSSSDS 226
Query: 1420 AISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIH----YTGQKQKEDVITL 1475
+ + + +N + + +A+ L W+ GQ +K++++
Sbjct: 227 ELLLGLTYE------VISSTNLEYFE-AKLLARCFLKLGEWLDKLQMNWGQGKKDEILQA 279
Query: 1476 YSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKG 1535
Y + W K + A +VL + SE+ YV + Y K
Sbjct: 280 YRTAVQFDDQWYKAWHSWALANFEVLQLDEQEPLAPSELR------SEYVVPAVEGYLKS 333
Query: 1536 LHRGHKNLFQALPRLLT 1552
L + Q L RLLT
Sbjct: 334 LSLSSEKSLQDLLRLLT 350
|
The FAT domain is named after FRAP, ATM and TRRAP. Length = 350 |
| >gnl|CDD|119432 cd05172, PIKKc_DNA-PK, DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 172 bits (438), Expect = 3e-48
Identities = 81/278 (29%), Positives = 133/278 (47%), Gaps = 44/278 (15%)
Query: 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKY 1809
I G + +LSSL++PK+I + GSD + PFL K +DLR+D R+ + ++N +L++
Sbjct: 1 IVGFDERVLVLSSLRKPKRITIRGSDEKEYPFLVKGGEDLRQDQRIQQLFGVMNNILAQD 60
Query: 1810 PESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRI 1869
R+R L +RT+ VIP+T G++EW+ +T L+ IL
Sbjct: 61 TACRQRALQLRTYQVIPMTPRFGLIEWLENTTPLKEIL---------------------- 98
Query: 1870 YDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHI 1929
++++L+ ++ M + P A+ R +A + A + I
Sbjct: 99 ---------KNDLLRRALVEM------------SASPEAFLSLRDHFAKSLAAMCVSHWI 137
Query: 1930 VGLGDRHGENILFDSTTGDCVHVDFSCLFDKGL-LLEKPELVPFRLTQNMIDGLGITGYE 1988
+G+GDRH N L D TG V +DF F L PEL+PFRLT ++ + +
Sbjct: 138 LGIGDRHLSNFLVDLETGGLVGIDFGHAFGTATQFLPIPELMPFRLTPQFVNLMEPMKAD 197
Query: 1989 GTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTK 2026
G TL LR R L+S ++ F+ +P ++W
Sbjct: 198 GLLRSCMVHTLRALRNERHLLLSTMDVFVKEPSLDWKN 235
|
DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double strand breaks (DSBs) by joining together two free DNA ends of little homology. DNA-PK functions as a molecular sensor for DNA damage that enhances the signal via phosphorylation of downstream targets. It may also act as a protein scaffold that aids the localization of DNA repair proteins to the site of DNA damage. DNA-PK also plays a role in the maintenance of telomeric stability and the prevention of chromosomal end fusion. Length = 235 |
| >gnl|CDD|191935 pfam08064, UME, UME (NUC010) domain | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 8e-26
Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 488 LPGFLRNHFVGLLNSIDRKMLHAE---DLSLQKQALKRIEILIEMIGSHLTTYVPKILVL 544
+ FL+ HF+G+L + ++ + +K+AL+ IE LI++ G H+++ P+I+
Sbjct: 1 VADFLQEHFLGILTRFSEVLHDSKGRKPIFEKKRALRSIEELIKLGGKHISSARPQIMAC 60
Query: 545 LMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLER 594
L A+ L+ E L H FI + ++ Q F A++P +
Sbjct: 61 LQSALEIPELRSEALRCWHVFI---KSLDEEELGPLLDQTFVAILPLWDT 107
|
This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1. Length = 107 |
| >gnl|CDD|214825 smart00802, UME, Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 2e-21
Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 488 LPGFLRNHFVGLLNSIDRKMLHAE---DLSLQKQALKRIEILIEMIGSHLTTYVPKILVL 544
L FL++HF+G+L + + + +K+AL+ I LI+++G H+++ +P+I+
Sbjct: 1 LADFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMAC 60
Query: 545 LMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLER 594
L A+ L+ L H I + ++ Q+FAA++P
Sbjct: 61 LQSALEIPELRSLALRCWHVLI---KTLKEEELGPLLDQIFAAILPLWPT 107
|
Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules. Length = 107 |
| >gnl|CDD|119423 cd05163, TRRAP, TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 5e-17
Identities = 68/267 (25%), Positives = 110/267 (41%), Gaps = 39/267 (14%)
Query: 1767 KKIVLLGSDGIKRPFLCKPKDDL--RKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAV 1824
+++ + G DG PFL + R++ R+++ +N +LSK E+RRR L V
Sbjct: 19 RRLTIRGHDGSIYPFLVQYPAARQARREERVLQLFRTLNSVLSKNKETRRRNLQFTLPLV 78
Query: 1825 IPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLK 1884
+PL+ +VE LQ+IY K IY++ Q + D +LK
Sbjct: 79 VPLSPQIRLVE----DDPSYISLQEIY-------EDKLE-----IYNEIQKDMVPDTILK 122
Query: 1885 TKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDS 1944
IL FP W R + + A+ S + +I+ + +R+ + I
Sbjct: 123 NYILSTFPTYQDYWLF------------RKQFTYQLALLSFMTYILSINNRNPDKIFISR 170
Query: 1945 TTGDCVHVDFS-CLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEG----TFLRVCEITL 1999
TG+ D + + L E VPFRLT N+ +G G EG + + + L
Sbjct: 171 DTGNVYQSDLLPSINNNKPLFHNNEPVPFRLTPNIQHLIGPIGLEGILTSSMMAIA-RCL 229
Query: 2000 SVLRTHRETLMSVLETFIHDPLVEWTK 2026
+ E + FI D L+ W K
Sbjct: 230 TEPEFDLENALQ---LFIRDELIAWHK 253
|
TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replication, and DNA repair. TRRAP also exists in non-HAT complexes such as the p400 and MRN complexes, which are implicated in ATP-dependent remodeling and DNA repair, respectively. Length = 253 |
| >gnl|CDD|202180 pfam02260, FATC, FATC domain | Back alignment and domain information |
|---|
Score = 61.3 bits (150), Expect = 5e-12
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 2064 LPLAVEGQARRLIAEAVSHKNLGKMYIWWMPWF 2096
PL+VE Q RLI+EA +NL +MYI W PW+
Sbjct: 1 EPLSVEQQVDRLISEATDPENLAQMYIGWCPWW 33
|
The FATC domain is named after FRAP, ATM, TRRAP C-terminal. The solution structure of the FATC domain suggests it plays a role in redox-dependent structural and cellular stability. Length = 33 |
| >gnl|CDD|119419 cd00893, PI4Kc_III, Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 7e-10
Identities = 63/282 (22%), Positives = 114/282 (40%), Gaps = 67/282 (23%)
Query: 1746 DLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRL 1805
P I A + L + L S I F+ K DDLR+D + I
Sbjct: 6 ISPKILQSALKIPYLELKK------LTDSTLINSEFIVKCGDDLRQDILATQ----IITE 55
Query: 1806 LSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQ 1865
L K E L++ + V+P+++ G++E++P++ + I + Q
Sbjct: 56 LQKIFELMFLDLWLNPYLVLPVSKTGGIIEFIPNSISIHEIKKQ---------------Q 100
Query: 1866 IKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSM 1925
I +YD F + + + +E A+ +AR + + A +S+
Sbjct: 101 INSLYDYFL----------------------ELYGSYTTE--AFLQARYNFIESMAGYSL 136
Query: 1926 VGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKP------ELVPFRLTQNMI 1979
+ +++ + DRH NIL DS G +H+DF + D P E F+ T+ M+
Sbjct: 137 LCYLLQIKDRHNGNILLDS-DGHIIHIDFGFILD-----SSPGNNLGFEPAAFKFTKEMV 190
Query: 1980 DGLGITGYEGT----FLRVCEITLSVLRTHRETLMSVLETFI 2017
D +G G + F +C +R H + ++S++ I
Sbjct: 191 DFMG--GKKSDDFKKFRYLCLRGFIAVRKHMDLVISLVYLLI 230
|
PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. Length = 289 |
| >gnl|CDD|119427 cd05167, PI4Kc_III_alpha, Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 2e-09
Identities = 45/220 (20%), Positives = 91/220 (41%), Gaps = 53/220 (24%)
Query: 1784 KPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGL 1843
K DD R+D ++ ++ + +S LY+ + V+ CG++E VP+++
Sbjct: 59 KVGDDCRQDMLALQLISLFKNIF----QSAGLDLYLFPYRVVATGPGCGVIEVVPNSKSR 114
Query: 1844 RNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTF 1903
D++ +T ++ ++F + +
Sbjct: 115 ------------------------------------DQIGRTTDNGLY-----EYFTSKY 133
Query: 1904 --SEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDK- 1960
A+ +AR + + A +S++ +++ + DRH NI+ D G +H+DF +F+
Sbjct: 134 GDESSLAFQKARENFIRSMAAYSLISYLLQIKDRHNGNIMIDD-DGHIIHIDFGFIFEIS 192
Query: 1961 --GLLLEKPELVPFRLTQNMIDGLGITGYEGTFLRVCEIT 1998
G L K E PF+LT+ M+ +G + F E+
Sbjct: 193 PGGNL--KFESAPFKLTKEMVQIMGGSMEATPFKWFVELC 230
|
PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling molecule. Vertebrate PI4KIIIalpha is also part of a signaling complex associated with P2X7 ion channels. The yeast homolog, Stt4p, is also important in regulating the conversion of phosphatidylserine to phosphatidylethanolamine at the ER and Golgi interface. Mammalian PI4KIIIalpha is highly expressed in the nervous system. Length = 311 |
| >gnl|CDD|119426 cd05166, PI3Kc_II, Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 5e-09
Identities = 64/281 (22%), Positives = 106/281 (37%), Gaps = 47/281 (16%)
Query: 1755 DEAEILSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPES 1812
E +S P KI + +D G + K DDLR+D +++ MIN ++ K
Sbjct: 65 RECSYFNSNALPLKISFVNADPMGENISVIFKAGDDLRQDMLVLQ---MIN-IMDKIWLQ 120
Query: 1813 RRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQ 1872
L + TF + D GMVE VP LR I Q G F
Sbjct: 121 EGLDLRMITFRCLSTGYDRGMVELVPDAETLRKI-QVEEGLTGSF--------------- 164
Query: 1873 FQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGL 1932
+D + KW + + +A + ++ A + +++G+
Sbjct: 165 ------KDRPIA------------KWLMKHNPSELEYEKAVENFIYSCAGCCVATYVLGI 206
Query: 1933 GDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE--KPELVPFRLTQNMI----DGLGITG 1986
DRH +NI+ + +G H+DF + K + PF T +M G T
Sbjct: 207 CDRHNDNIML-TKSGHMFHIDFGKFLGHAQMFGGFKRDRAPFVFTSDMAYVINGGDKPTQ 265
Query: 1987 YEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKS 2027
F+ +C +++R H L+++L L E +K
Sbjct: 266 RFQDFVDLCCRAYNIIRKHANLLLNLLRMMACSGLPELSKI 306
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domain, a PI3K homology domain of unknown function, an ATP-binding cataytic domain, a Phox homology (PX) domain, and a second C2 domain at the C-terminus. They are activated by a variety of stimuli including chemokines, cytokines, lysophosphatidic acid (LPA), insulin, and tyrosine kinase receptors. Length = 353 |
| >gnl|CDD|119422 cd00896, PI3Kc_III, Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 9e-09
Identities = 62/274 (22%), Positives = 113/274 (41%), Gaps = 59/274 (21%)
Query: 1750 ISGI-ADEAEILSSLQRPKKIVLLGSDGIKR---PFLCKPKDDLRKDSRMMEFTAMINRL 1805
I+GI +E+ + S P K+ G + P + K DDLR+D +++ ++++RL
Sbjct: 63 ITGIIPEESSVFKSALMPLKLTFKTEKGNEEGEYPVIFKVGDDLRQDQLVIQIISLMDRL 122
Query: 1806 LSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQ 1865
L K L + + V+ + G+VE++P + L +IL+
Sbjct: 123 LKKE----NLDLKLTPYKVLATSPTDGLVEFIP-SVTLASILKKY--------------- 162
Query: 1866 IKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSM 1925
I + + P+D P + TF + A Y +
Sbjct: 163 -GGILNYLRKLNPDDGG---------PLGISPEVMDTFVKSCA------GY-------CV 199
Query: 1926 VGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL---EKPELVPFRLTQNMIDGL 1982
+ +I+G+GDRH +N+L + G H+DF G +L KP P +L + M++ +
Sbjct: 200 ITYILGVGDRHLDNLLL-TKDGKLFHIDF------GYILGRDPKPFPPPMKLCKEMVEAM 252
Query: 1983 GITGYEG--TFLRVCEITLSVLRTHRETLMSVLE 2014
G EG F C ++LR ++++
Sbjct: 253 GGAQSEGYQEFKSYCCEAYNILRKSANLILNLFS 286
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-terminal ATP-binding cataytic domain. They phosphorylate only the substrate PtdIns. They interact with a regulatory subunit, Vps15, to form a membrane-associated complex. Class III PI3Ks are involved in protein and vesicular trafficking and sorting, autophagy, trimeric G-protein signaling, and phagocytosis. Length = 350 |
| >gnl|CDD|119428 cd05168, PI4Kc_III_beta, Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 2e-08
Identities = 47/215 (21%), Positives = 93/215 (43%), Gaps = 62/215 (28%)
Query: 1779 RPFLCKPKDDLRKDSRMMEFTAMINRLLSKYP---ESRRRKLYIRTFAVIPLTEDCGMVE 1835
R + K DDLR++ + +L+ ++ + L++R + ++ + + G++E
Sbjct: 33 RSVIVKTGDDLRQE-------LLAMQLIQQFDRIFKEEGLPLWLRPYEILVTSSNSGLIE 85
Query: 1836 WVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVF 1895
+P T + ++ ++K + K + D
Sbjct: 86 TIPDTVSIDSL------------KKKLTSKFKSLLD------------------------ 109
Query: 1896 HKWFLTTFSEPAAWFR-ARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDF 1954
+F TF +P+ FR A+ + + A +S++ +++ + DRH NIL D+ G +H+DF
Sbjct: 110 --FFKKTFGDPSERFREAQKNFIESLAGYSLICYLLQIKDRHNGNILIDN-DGHIIHIDF 166
Query: 1955 SCLFDKGLLLE-KP-----ELVPFRLTQNMIDGLG 1983
G +L P E PF+LTQ I+ +G
Sbjct: 167 ------GFMLSNSPGNVGFETAPFKLTQEYIEVMG 195
|
PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KIIIbeta also functions in the genesis, transport, and exocytosis of synaptic vesicles. The Drosophila PI4KIIIbeta is essential for cytokinesis during spermatogenesis. Length = 293 |
| >gnl|CDD|119417 cd00891, PI3Kc, Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 3e-08
Identities = 56/268 (20%), Positives = 104/268 (38%), Gaps = 44/268 (16%)
Query: 1753 IADEAEILSSLQRPKKIVLLGSDGIKRPFLC--KPKDDLRKDSRMMEFTAMINRLLSKYP 1810
I ++ +++ S ++P +V +D P K DDLR+D T + RL+ K
Sbjct: 63 IIEKCKVMDSKKKPLWLVFKNADPSGEPIKVIFKVGDDLRQDM----LTLQMIRLMDKIW 118
Query: 1811 ESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIY 1870
+ L + + I + GM+E VP++ + I + G F +
Sbjct: 119 KKEGLDLRMTPYGCIATGDGVGMIEVVPNSETIAKIQKKAGGVGGAFKD-------NPLM 171
Query: 1871 DQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIV 1930
+ + K +E + +A + ++ A + + +++
Sbjct: 172 NWLKKKNKGEEDYE--------------------------KAVENFTYSCAGYCVATYVL 205
Query: 1931 GLGDRHGENILFDSTTGDCVHVDFSCLF--DKGLLLEKPELVPFRLTQNMIDGLGITG-- 1986
G+GDRH +NI+ + TG H+DF K K E PF LT +M +G
Sbjct: 206 GIGDRHNDNIML-TKTGHLFHIDFGHFLGNFKKKFGIKRERAPFVLTPDMAYVMGGGDSE 264
Query: 1987 YEGTFLRVCEITLSVLRTHRETLMSVLE 2014
F +C ++LR H +++
Sbjct: 265 KFQRFEDLCCKAYNILRKHGNLFINLFS 292
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. Class II PI3Ks comprise three catalytic isoforms that do not associate with any regulatory subunits. They selectively use PtdIns as a susbtrate to produce PtsIns(3)P. Length = 352 |
| >gnl|CDD|119435 cd05176, PI3Kc_C2_alpha, Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 2e-05
Identities = 66/276 (23%), Positives = 110/276 (39%), Gaps = 51/276 (18%)
Query: 1760 LSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKL 1817
SS P KI L+ +D G + + K +DLR+D ++ +++++ + L
Sbjct: 70 FSSNAVPLKIALVNADPLGEEINVMFKVGEDLRQDMLALQMIKIMDKIWLQ----EGLDL 125
Query: 1818 YIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKI 1877
+ F + +D GMVE VP + LR I Q Y G F + K + R Y+
Sbjct: 126 RMVIFKCLSTGKDRGMVELVPASETLRKI-QVEYGVTGSF-KDKPLAEWLRKYNP----- 178
Query: 1878 PEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHG 1937
E+E K A + ++ A + +++G+ DRH
Sbjct: 179 AEEEYEK---------------------------ASENFIYSCAGCCVATYVLGICDRHN 211
Query: 1938 ENILFDSTTGDCVHVDFSCLFDKGLLLE--KPELVPFRLTQNMIDGLGITGYEGT----- 1990
+NI+ S TG H+DF + K + PF LT +M I G E
Sbjct: 212 DNIMLRS-TGHMFHIDFGKFLGHAQMFGSFKRDRAPFVLTSDM--AYVINGGEKPTIRFQ 268
Query: 1991 -FLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWT 2025
F+ +C +++R H +++L L E T
Sbjct: 269 LFVDLCCQAYNLIRKHSNLFLNLLSLMTQSGLPELT 304
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domain, a PI3K homology domain of unknown function, an ATP-binding cataytic domain, a Phox homology (PX) domain, and a second C2 domain at the C-terminus. The class II alpha isoform, PI3K-C2alpha, plays key roles in clathrin assembly and clathrin-mediated membrane trafficking, insulin signaling, vascular smooth muscle contraction, and the priming of neurosecretory granule exocytosis. Length = 353 |
| >gnl|CDD|119436 cd05177, PI3Kc_C2_gamma, Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 3e-05
Identities = 59/283 (20%), Positives = 110/283 (38%), Gaps = 48/283 (16%)
Query: 1750 ISGI-ADEAEILSSLQRPKKIVLLGSDGIKR--PFLCKPKDDLRKDSRMMEFTAMINRLL 1806
+ GI AD +S P KI + ++ + + + K DDLR+D +++ +++ +
Sbjct: 60 VKGIDADACSYFTSNAAPLKISFINANPLAKNISIIFKTGDDLRQDMLVLQIVRVMDNIW 119
Query: 1807 SKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQI 1866
+ + + + + + G+V+ VP L
Sbjct: 120 LQ----EGLDMQMIIYRCLSTGKTQGLVQMVPDAVTL----------------------- 152
Query: 1867 KRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMV 1926
KI + L I P+ KWF + +A + H+ A W +V
Sbjct: 153 --------AKIHRESGL---IGPLKENTIEKWFHMHNKLKEDYDKAVRNFFHSCAGWCVV 201
Query: 1927 GHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE--KPELVPFRLTQNMIDGLGI 1984
I+G+ DRH +NI+ + +G H+DF K + PF T M +
Sbjct: 202 TFILGVCDRHNDNIML-THSGHMFHIDFGKFLGHAQTFGSIKRDRAPFIFTSEMEYFITE 260
Query: 1985 TGYEGT----FLRVCEITLSVLRTHRETLMSVLETFIHDPLVE 2023
G + F+ +C +++R H + L+++LE +H L E
Sbjct: 261 GGKKPQRFQRFVELCCRAYNIVRKHSQLLLNLLEMMLHAGLPE 303
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domain, a PI3K homology domain of unknown function, an ATP-binding cataytic domain, a Phox homology (PX) domain, and a second C2 domain at the C-terminus. The class II gamma isoform, PI3K-C2gamma, is expressed in the liver, breast, and prostate. It's biological function remains unknown. Length = 354 |
| >gnl|CDD|119425 cd05165, PI3Kc_I, Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 3e-04
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 1929 IVGLGDRHGENILFDSTTGDCVHVDFSCLFD--KGLLLEKPELVPFRLTQNMIDGLGITG 1986
++G+GDRH +NI+ TG H+DF + K E VPF LT + + +G
Sbjct: 213 VLGIGDRHNDNIMVKE-TGQLFHIDFGHILGNYKSKFGINRERVPFVLTPDFVHVIGRGK 271
Query: 1987 YEGT------FLRVCEITLSVLRTH 2005
+ T F +CE LR H
Sbjct: 272 KDNTSEHFQRFQDLCEKAYLALRRH 296
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates PtdIns and PtdIns(4)P. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and delta) and IB (gamma). Length = 366 |
| >gnl|CDD|119433 cd05173, PI3Kc_IA_beta, Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 3e-04
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 8/122 (6%)
Query: 1911 RARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD--KGLLLEKPE 1968
RA + + A + + +++G+GDRH +NI+ G H+DF + K K E
Sbjct: 191 RAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVRK-NGQLFHIDFGHILGNFKSKFGIKRE 249
Query: 1969 LVPFRLTQNMIDGL--GITGYE---GTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVE 2023
VPF LT + I + G TG G F + CE +LR + +++ + L E
Sbjct: 250 RVPFILTYDFIHVIQQGKTGNTEKFGRFRQYCEDAYLILRKNGNLFITLFALMLTAGLPE 309
Query: 2024 WT 2025
T
Sbjct: 310 LT 311
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and delta) and IB (gamma). Class IA enzymes contain an N-terminal p85 binding domain, a Ras binding domain, a lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-terminal ATP-binding cataytic domain. They associate with a regulatory subunit of the p85 family and are activated by tyrosine kinase receptors. In addition, PI3Kbeta can also be activated by G-protein-coupled receptors. Deletion of PI3Kbeta in mice results in early lethality at around day three of development. PI3Kbeta plays an important role in regulating sustained integrin activation and stable platelet agrregation, especially under conditions of high shear stress. Length = 362 |
| >gnl|CDD|119420 cd00894, PI3Kc_IB_gamma, Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 4e-04
Identities = 53/234 (22%), Positives = 91/234 (38%), Gaps = 45/234 (19%)
Query: 1784 KPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGL 1843
K DDLR+D +++ I R++ E+ L + + I + GM+E V +
Sbjct: 105 KHGDDLRQDMLILQ----ILRIMESIWETESLDLCLLPYGCISTGDKIGMIEIVKDATTI 160
Query: 1844 RNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTF 1903
I Q + G F + + + K P +E
Sbjct: 161 AKIQQSTVGNTGAFKDEV-------LSHWLKEKCPIEE---------------------- 191
Query: 1904 SEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD--KG 1961
+ A + ++ A + + ++G+GDRH +NI+ + TG+ H+DF + K
Sbjct: 192 ----KFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMI-TETGNLFHIDFGHILGNYKS 246
Query: 1962 LLLEKPELVPFRLTQNMIDGLGITG-----YEGTFLRVCEITLSVLRTHRETLM 2010
L E VPF LT + + +G +G + F VC LR H L+
Sbjct: 247 FLGINKERVPFVLTPDFLFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLI 300
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and delta) and IB (gamma). PI3Kgamma associates with one of two regulatory subunits, p101 and p84. It is activated by G-protein-coupled receptors (GPCRs) by direct binding to their betagamma subunits. It contains an N-terminal Ras binding domain, a lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-terminal ATP-binding cataytic domain. PI3Kgamma signaling controls diverse immune and vascular functions including cell recruitment, mast cell activation, platelet aggregation, and smooth muscle contractility. Length = 365 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2096 | |||
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 100.0 | |
| KOG0892 | 2806 | consensus Protein kinase ATM/Tel1, involved in tel | 100.0 | |
| KOG0891 | 2341 | consensus DNA-dependent protein kinase [Replicatio | 100.0 | |
| KOG0889 | 3550 | consensus Histone acetyltransferase SAGA, TRRAP/TR | 100.0 | |
| COG5032 | 2105 | TEL1 Phosphatidylinositol kinase and protein kinas | 100.0 | |
| cd05171 | 279 | PIKKc_ATM Ataxia telangiectasia mutated (ATM), cat | 100.0 | |
| cd05170 | 307 | PIKKc_SMG1 Suppressor of morphogenetic effect on g | 100.0 | |
| cd05169 | 280 | PIKKc_TOR TOR (Target of rapamycin), catalytic dom | 100.0 | |
| cd05163 | 253 | TRRAP TRansformation/tRanscription domain-Associat | 100.0 | |
| cd05172 | 235 | PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK) | 100.0 | |
| cd00892 | 237 | PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-rela | 100.0 | |
| cd05164 | 222 | PIKKc Phosphoinositide 3-kinase-related protein ki | 100.0 | |
| cd00142 | 219 | PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like f | 100.0 | |
| cd00891 | 352 | PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic | 100.0 | |
| cd00896 | 350 | PI3Kc_III Phosphoinositide 3-kinase (PI3K), class | 100.0 | |
| cd05166 | 353 | PI3Kc_II Phosphoinositide 3-kinase (PI3K), class I | 100.0 | |
| cd05168 | 293 | PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), T | 100.0 | |
| cd05165 | 366 | PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, | 100.0 | |
| smart00146 | 202 | PI3Kc Phosphoinositide 3-kinase, catalytic domain. | 100.0 | |
| cd05177 | 354 | PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), c | 100.0 | |
| cd00894 | 365 | PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), c | 100.0 | |
| cd05173 | 362 | PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), cl | 100.0 | |
| cd05174 | 361 | PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), c | 100.0 | |
| cd00893 | 289 | PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type I | 100.0 | |
| PF00454 | 235 | PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kina | 100.0 | |
| cd05176 | 353 | PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), c | 100.0 | |
| cd05167 | 311 | PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), | 100.0 | |
| cd00895 | 354 | PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), cl | 100.0 | |
| cd05175 | 366 | PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), c | 100.0 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 100.0 | |
| KOG0906 | 843 | consensus Phosphatidylinositol 3-kinase VPS34, inv | 100.0 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 100.0 | |
| KOG0904 | 1076 | consensus Phosphatidylinositol 3-kinase catalytic | 99.97 | |
| KOG0902 | 1803 | consensus Phosphatidylinositol 4-kinase [Signal tr | 99.96 | |
| KOG0903 | 847 | consensus Phosphatidylinositol 4-kinase, involved | 99.93 | |
| smart00802 | 107 | UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. | 99.91 | |
| PTZ00303 | 1374 | phosphatidylinositol kinase; Provisional | 99.89 | |
| PF08064 | 107 | UME: UME (NUC010) domain; InterPro: IPR012993 This | 99.88 | |
| PF02260 | 33 | FATC: FATC domain; InterPro: IPR003152 The FATC do | 99.26 | |
| COG5032 | 2105 | TEL1 Phosphatidylinositol kinase and protein kinas | 98.65 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 98.34 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 98.27 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 98.18 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 97.86 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 97.85 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 97.8 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 97.72 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 97.6 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 97.59 | |
| KOG1824 | 1233 | consensus TATA-binding protein-interacting protein | 97.56 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 97.45 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 97.32 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 97.31 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 97.25 | |
| KOG2023 | 885 | consensus Nuclear transport receptor Karyopherin-b | 97.08 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 97.02 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 97.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 96.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 96.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 96.73 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 96.61 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 96.29 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 96.18 | |
| KOG2171 | 1075 | consensus Karyopherin (importin) beta 3 [Nuclear s | 96.04 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 95.82 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 95.76 | |
| KOG1242 | 569 | consensus Protein containing adaptin N-terminal re | 95.48 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 95.47 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 95.3 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 95.27 | |
| KOG0915 | 1702 | consensus Uncharacterized conserved protein [Funct | 95.27 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 95.22 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 95.18 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 95.05 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 94.88 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 94.67 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 94.46 | |
| KOG0212 | 675 | consensus Uncharacterized conserved protein [Funct | 94.21 | |
| KOG1062 | 866 | consensus Vesicle coat complex AP-1, gamma subunit | 94.02 | |
| KOG0213 | 1172 | consensus Splicing factor 3b, subunit 1 [RNA proce | 93.97 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 93.34 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 93.3 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 93.14 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 93.07 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 92.87 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 92.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 92.51 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 92.25 | |
| KOG1248 | 1176 | consensus Uncharacterized conserved protein [Funct | 92.23 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 92.18 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 92.11 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 91.69 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 91.27 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 91.13 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 91.04 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 90.98 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 90.95 | |
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 90.48 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 90.31 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 90.26 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.23 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 89.74 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 89.64 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 89.0 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 88.9 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 88.5 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 88.5 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 88.26 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 87.83 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 87.69 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 87.58 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 87.33 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 87.14 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 86.83 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 86.58 | |
| smart00145 | 184 | PI3Ka Phosphoinositide 3-kinase family, accessory | 86.04 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 86.02 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 85.9 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 85.39 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 85.3 | |
| cd00872 | 171 | PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, | 84.95 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 84.53 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 84.43 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 84.39 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 83.98 | |
| PF00613 | 184 | PI3Ka: Phosphoinositide 3-kinase family, accessory | 83.54 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 83.42 | |
| KOG0892 | 2806 | consensus Protein kinase ATM/Tel1, involved in tel | 83.25 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 83.07 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 82.8 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 82.44 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 80.91 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 80.88 | |
| KOG1241 | 859 | consensus Karyopherin (importin) beta 1 [Nuclear s | 80.41 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 80.22 |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-278 Score=2718.16 Aligned_cols=1908 Identities=37% Similarity=0.595 Sum_probs=1603.2
Q ss_pred hhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccccccccccccccccc
Q 000134 20 VRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKNACKLLLNVEDDILS 99 (2096)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (2096)
++.-|-+|+| ..++-+....||.+|+.+..+....++|-+++.+||+.|+++.. ....+...|+.|... .....
T Consensus 444 ~~~v~~~sl~---~~~~~~~~l~~~~~ll~~~~~~~~~~~~~~~~~~v~llC~~~~~--~~~~~~t~~~~~~~~-~~~~~ 517 (2382)
T KOG0890|consen 444 IQEVAEMSLP---SLSQYIRILNMFEKLLLKLSDDLQNIKKDFAQILVFLLCTKQGK--ENYSEKTITKYFLCH-GLQKL 517 (2382)
T ss_pred HHHHHHhccc---hhcccchhccccHHHHHHhcccccccchhhhhheEEEeeccccc--cCchhhhhhhhhhcc-ccccc
Confidence 8888999999 55666667788888999999999999999999999999999754 566788899988872 22222
Q ss_pred ccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccchhhHHHHHHHHHHccC
Q 000134 100 QTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHG 179 (2096)
Q Consensus 100 ~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~ 179 (2096)
.. +.++.|++|++.. +...-.+....+......+..++... +...++..++|++++++..++..+-|.
T Consensus 518 ~~----l~~~~l~~c~~~~----~~~~~~~~~~~~~~i~~~~~~d~~~~----~~~~~n~~~~e~~~~~~~~~r~~ll~t 585 (2382)
T KOG0890|consen 518 FC----LAANSLSKCKKEL----EEAFLSPPSLEMVKIDYEFLLDLFFG----INQHLNTFSKETQVSFVETIRTMLLHT 585 (2382)
T ss_pred cc----cccchhccCcccc----hhhhcCCCcHHHHhhhhhhccchHHh----HHHHhhhhHHHHHHHHHHHHHHHHhcC
Confidence 22 9999999999432 12222222222333344444554443 677889999999999999999999999
Q ss_pred CchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHhhhcCCh--hH
Q 000134 180 TRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDP--LI 257 (2096)
Q Consensus 180 ~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i 257 (2096)
+....+.++.. .+ .+.+ ..|+.+...++..+.+.|.+.-.+...+. ...++.-+.+.....+|- -.
T Consensus 586 t~~~~~~~~~~------~~-~~~~----~~Fle~~~~l~~~~~~~~~~~~~~~~~k~-~~~~~~ll~~~~~~~~d~~~l~ 653 (2382)
T KOG0890|consen 586 TSKIVLFARSS------II-VALD----IGFLEQLNNLVRVEILVCLRSELTVTLKN-LRMYTNLLEISFAALSDDAALF 653 (2382)
T ss_pred Ccceeeeecch------hh-hccc----hHHHHhhhhhHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHhhcchhHHH
Confidence 97765555444 12 3444 77999999988888888888766544443 566777777766666663 67
Q ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHH-HH
Q 000134 258 LETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDY-LS 336 (2096)
Q Consensus 258 ~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~-~~ 336 (2096)
.++.|..+-..+.++.+..|+|..++-+++.|+++.+..++ . +++...++++..++...+|.- ++
T Consensus 654 i~~~L~~~~s~~~~~~v~~~lf~~~~~~~a~q~~~~~~~~s-~-------------~~~~~~~l~~~~~~~~~i~~~~~~ 719 (2382)
T KOG0890|consen 654 IHHTLHFVLSARISSVVKSELFLSILGLLALQNVKINVNVS-T-------------VGNKAEALGYTSKIYLDIFQRDIL 719 (2382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeee-c-------------chhHHHHhhhHHHHHHHHHHhhhh
Confidence 78888888888888999999999999999999999999999 3 455566667776665555555 66
Q ss_pred HHhcCchHHHHHHHHHHhCCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhcc
Q 000134 337 VRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQ 416 (2096)
Q Consensus 337 ~~l~~rp~~~~~~~e~llg~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~ 416 (2096)
-+..++|..+.+++....+...+++++.+++++||.++....+ ++..+++............++.+ ++.|+++++++
T Consensus 720 ~~~~~~~n~~~~~~~~~~~~~~~~~~r~~~~~~Lp~~~~~~~~--~a~~~vr~~~~~i~~l~~~~~~n-~~~i~~~~~~t 796 (2382)
T KOG0890|consen 720 NRLFSDPNSASEFAPAYVEHEGRELLRCLLAVVLPDLNFPNQK--IAVAIVRPLLKYISTLSSLLLIN-LTLIYTHLLCT 796 (2382)
T ss_pred hHHHhhhhhhhhhcchhhccchHHHHHHHHHHhcchhhccccH--HHHHHHHHhhhhhhHHHHHHhcC-chhhhchHhhh
Confidence 7778999999999987888888999999999999999999765 56667777666666666666656 99999999999
Q ss_pred ccHHHHHHHHHHHhhhcCCChHHHHHHhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHH
Q 000134 417 ADERRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHF 496 (2096)
Q Consensus 417 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~ 496 (2096)
+.+++..+++++++.+.++++++.+.+..+..+.||+++......-+..+...+-...+..-.+..+.++.+.+|+++|+
T Consensus 797 ~~~~~~~sv~~l~~~~~~s~l~~~~~~e~~~~~~ell~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~e~~~~fl~~~l 876 (2382)
T KOG0890|consen 797 EEPNNLESVISLLKLRIGSDLRESLISETFALLVELLRFYNNNFTPEKRKFSSRKCDFIDEDIRTLISSELFQDFLQNHL 876 (2382)
T ss_pred ccchhhHHHHHHHHHhhhhhHHHHHHhhHHHHHHHHHHHHhccCcHHHHhhhhhhhhhhhccchhcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999877766555432221222223222345566788999999999
Q ss_pred HHHHHHhhhhhcCCCC-hHHHHHHHHHHHHHHHHhcc-ccccchhhHHHHHHH-HhcCCCcchhhhHHHHHHHHHhccCC
Q 000134 497 VGLLNSIDRKMLHAED-LSLQKQALKRIEILIEMIGS-HLTTYVPKILVLLMH-AINKESLQCEGLSVLHFFIEQLSRVS 573 (2096)
Q Consensus 497 LGil~~~~~~l~~~~~-~~~k~~~l~sl~~li~l~g~-~v~~~~pqI~a~L~~-aL~~~~L~~~~l~~W~~fv~~L~~~~ 573 (2096)
|||+++|+.++++++. +..|++++.+|+.+|++||+ ||++++|||+.+|++ +++.++++..|++||+.|++.+.+.
T Consensus 877 lgil~~f~~~l~~~~~~~~~k~~tl~~I~~~i~~~g~~~v~~~~~~i~~~L~~~~~~~~~l~~~~~~~w~~f~r~l~~~- 955 (2382)
T KOG0890|consen 877 LGILAVFSSRLLEPSTIIEQKKKTLKGIKKLISFMGSKAVSTRLPKIEFLLQFGTLFKDELRFLALKAWHIFIRILNDN- 955 (2382)
T ss_pred HHHHHHHHHhhcCcchHHHHHHHHHHhHHHHHhhccHHHHHHHhHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHhhh-
Confidence 9999999999988775 45789999999999999995 999999999999999 7999999999999999999999864
Q ss_pred CcchhhHHHH-HHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCC
Q 000134 574 PSSTKHVISQ-VFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMT 652 (2096)
Q Consensus 574 ~~~l~~ll~~-i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~ 652 (2096)
..+++++. |+++++|+++.. ..+.+..++++|+.+|++.+...+.++|.+|++|++......++..|+..+
T Consensus 956 --~~~~~~~~~i~~~l~p~l~~~------~~~~v~~i~~~i~~~~~d~i~~~~~~~~~l~~~p~~~~~~~~~~~~r~~~~ 1027 (2382)
T KOG0890|consen 956 --EKSDILDRNIIAALFPLLEHI------ELNLVSSILDFISLDNRDNIQILKSDIPILPSIPELGNLKAAIQEARGLLS 1027 (2382)
T ss_pred --hhcchhhhHHHHHHHHHhccc------cHHHHHHHHHHHHHhhHHHHHhhhccccccCCchHHHHHHHHHHHHHhhcc
Confidence 45566666 899999999622 258899999999999999999999999999999999999999999998766
Q ss_pred ---HHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHH
Q 000134 653 ---LKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLK 729 (2096)
Q Consensus 653 ---l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~ 729 (2096)
+.++++.|++.+.|||..||++++++|+.++.+++ ++......+.....+.+++|+++||+||.++. .+++
T Consensus 1028 ~~~l~~~l~~~~~~~~~enl~vr~~~l~~l~~~~~k~~-e~~~~~~~~~~~~~~~l~ql~~~Ll~gc~k~~-----~~~~ 1101 (2382)
T KOG0890|consen 1028 EDDLDDQLRDFMKKLKHENLPVRVEKLQDLEFLIGKNR-EKLDVLALKELGPEEDLSQLLTVLLDGCQKKT-----SQLE 1101 (2382)
T ss_pred ccchhhhhHHHHHHhHhhhhHHHHHHHHHHHHHHhhhh-hHhhhhhhhhcccchhHHHHHHHHHHHHHHHH-----HHHH
Confidence 78999999999999999999999999999999554 45554444333233679999999999999975 4899
Q ss_pred HHHHHhhcccCccCccccccccccc----cc---ccccCh--hhHHHHHHHHHHHHHHcCCChhhHhHHHHHHHHHHHHc
Q 000134 730 LVCADCLGALGAVDPAKVKGFSCQR----FK---IECSDD--DLIFELIDKHLARAFRAAPDTIIQDSAALAIQELLKIA 800 (2096)
Q Consensus 730 ~lca~CLG~IGalDp~r~~~~~~~~----~~---~~~~~~--~f~~~ll~~~Lv~af~s~~dt~~Q~~~A~AiQElLk~~ 800 (2096)
++||+|||+||||||++..++.++. .. .++.+. .| .++....++++|+-..|+..|++++|++||.|+..
T Consensus 1102 ~~~akcLg~lgaidp~~~~~k~q~~i~~~~~~~~~~~~~~~i~~-~~~~~~~l~~~~~~~~~~~~q~~~~~~~qe~l~~~ 1180 (2382)
T KOG0890|consen 1102 ELCAKCLGELGAIDPSCHRFKEQETIPSILQVLPIECSDLPIKF-IDFAWDTLVKAFLCEPDQLKQDVVAYAIQEVLVLG 1180 (2382)
T ss_pred HHHHHHHHhhhccCchhhhhhcccccchhhhccccccCchhhhh-HHHHHHHHHHHHhcCcChhhhhHHHHHHHHHHHHh
Confidence 9999999999999999887765432 11 122222 24 57888899999999999999999999999999955
Q ss_pred CCCcccccCcchhhhhhhccccchhhhcccCCCCCchhhhchhhh-HHHHhhchhHHHHhccccccccccC-CCCCCCCC
Q 000134 801 GCEASLDENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNMRGR-KFWDRFSIYVKEIIAPCLTSRFQLP-SGSDSVST 878 (2096)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~W~~~p~~~r~~l~P~ltS~Y~~~-~~~~~~~~ 878 (2096)
||+. .. ...++. ++|++||+++|+++.|+|+|||+.+ +.++....
T Consensus 1181 ~~~n-~e--------------------------------~~~~~~~elW~~Fp~~~k~~~~P~L~s~Y~sq~~~p~~~~k 1227 (2382)
T KOG0890|consen 1181 GSSN-IE--------------------------------PLDRGMCELWERFPNEVKEEMEPTLTSRYASQKPEPSVGEK 1227 (2382)
T ss_pred cccc-Cc--------------------------------cCCccHHHHHHHhHHHHHHHHhhcccchhccCCCCCCcccc
Confidence 5541 00 001344 8999999999999999999999943 34456789
Q ss_pred CCcccCCCChHHHHHHHHHHHHhhhcCCch-hHHHHhhhhhhccHhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Q 000134 879 GPIYLPSMSFRRWIYYWIRKLTVHATGSRA-SIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLD 957 (2096)
Q Consensus 879 ~Pi~~~~~sy~~Wl~~w~~~L~~~~~~~~~-~iF~~c~~iir~D~~ia~fLLPylvl~il~~g~~e~~~~I~~Ei~~VL~ 957 (2096)
+|||++...|++|+..|+.+|+.+++++.+ +||++|+.++++|..++.|||||++++|++.+++++|+.|.+||++||+
T Consensus 1228 ~Piy~~~lg~~eW~~~w~~~Li~ka~~s~~~~ifs~cs~~~k~D~~~t~fLlP~ill~vll~~~~e~~~~V~~eil~vl~ 1307 (2382)
T KOG0890|consen 1228 KPIYKSSLGYREWLSRWSLKLIAKAESSEASPLFSLCSIIVKDDFKVTRFLLPYILLDVLLVCEEEDRNSVTEEILSVLD 1307 (2382)
T ss_pred cccccccccHHHHHHHHHHHHHHhccccccchHHHHHHHHHhccchhHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHh
Confidence 999999999999999999999999887765 7999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcccCCCchhhhHHHHHHHHHHhhhHHHHHHHHHhhhhhcchhcccCCCCCCCCCcchhhHHHHHhhhHhhh
Q 000134 958 AAASDHSGASVHGISGQSEVCIQAIFTLLDNLGQWVDDVKQELALSESLTSKQQGSKSKHPASSMHQDQLLTQCQYVSGL 1037 (2096)
Q Consensus 958 ~~~~~~~~~~~~~~~~~~~~~~q~vF~vlD~l~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~f 1037 (2096)
++.+..-+ +.. . ...++|+|+||+++||+++|.|+++|.........+|-.+.. .+...++..+ ..+..|++|
T Consensus 1308 ~~~~~t~n-s~~-~-~~d~~~~~~VF~~ld~l~qw~r~~~q~~~~~k~~~sk~~R~~-~~~~~~Tt~~---~~~~~v~~f 1380 (2382)
T KOG0890|consen 1308 EAATNTIN-SRG-T-ASDRLCVQFVFYVLDYLYQWARHKKQELAEKKKIWSKVNRFW-KSIMSWTTTG---EDIEGVQSF 1380 (2382)
T ss_pred cccccccc-ccc-c-cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhhh-eeeeccccCC---CchhhhHHH
Confidence 98665221 111 1 122899999999999999999999988765433223322200 0111111111 235679999
Q ss_pred ccCCCHHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHH-HhccCC
Q 000134 1038 LSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLAR-LHKSLS 1116 (2096)
Q Consensus 1038 L~~Ip~~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~-~~~~~s 1116 (2096)
|+.||..+||+||++|++|+||+||+|+| +.. +++....+..+..||.+|+.|+||||++|+++ ..+.++
T Consensus 1381 L~~iP~~tLa~aSfrc~~y~RalmylEs~-~~~--------ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s 1451 (2382)
T KOG0890|consen 1381 LDLIPSDTLARASFRCKAYARALMYLESH-RST--------EKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS 1451 (2382)
T ss_pred HhhccHHHHHHHHHhhHHHHHHHHHHHHh-ccc--------cchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc
Confidence 99999999999999999999999999998 211 22223333456667779999999999999999 467899
Q ss_pred hhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhc
Q 000134 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2096)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrl 1196 (2096)
+.+||++||+.|+|.+|++|||+++|.+|++..++.|+++|+.++||+++++++++|+..+.+++.++|+..++||||++
T Consensus 1452 l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l 1531 (2382)
T KOG0890|consen 1452 LYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRL 1531 (2382)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHhhcccCccCccccCCCCCcchhHH-HHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchh-hHHhhhHHH
Q 000134 1197 GRWDLMDEYLSGADEEGLLCSSSESNASFDMD-VAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMD-SYTRAYPFI 1274 (2096)
Q Consensus 1197 g~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~-l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~e-Sy~r~y~~l 1274 (2096)
|+||.+++++. +. ....|... +|+++++..++|...+.+.|+.+|..++.++++.+.+ ||+|+|+++
T Consensus 1532 ~qwD~~e~~l~--~~---------n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~ 1600 (2382)
T KOG0890|consen 1532 SQWDLLESYLS--DR---------NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEIL 1600 (2382)
T ss_pred cchhhhhhhhh--cc---------cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHH
Confidence 99999999987 33 34678888 9999999999999999999999999999999998887 999999999
Q ss_pred HHhhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCc---CCCCchhHHH
Q 000134 1275 VKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGA---SGLGAEVGNC 1351 (2096)
Q Consensus 1275 ~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~---~~~~~~~~~~ 1351 (2096)
++||++.|++.+++.+...+..+.+ . .--.+|..|++.++++++.+||||++||+.++. .++++++|+|
T Consensus 1601 ~kLH~l~el~~~~~~l~~~s~~~~s------~--~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~ 1672 (2382)
T KOG0890|consen 1601 MKLHLLLELENSIEELKKVSYDEDS------A--NNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGEC 1672 (2382)
T ss_pred HHHHHHHHHHHHHHHhhccCccccc------c--ccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHH
Confidence 9999999999999887643322111 1 112789999999999999999999999999987 3678999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCC
Q 000134 1352 WLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVP 1431 (2096)
Q Consensus 1352 WL~~AklARKag~~~~A~~all~a~~~~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~ 1431 (2096)
|+++||+|||+||+|+|++||++|..+..|++++|+||++|++|++++|+.+||+.++.+..+..++
T Consensus 1673 wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~------------- 1739 (2382)
T KOG0890|consen 1673 WLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTP------------- 1739 (2382)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCC-------------
Confidence 9999999999999999999999999999999999999999999999999999999997544332211
Q ss_pred CCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhc
Q 000134 1432 LNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEEN 1511 (2096)
Q Consensus 1432 ~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~ 1511 (2096)
-++. +....-...+|+.|++++|++++++..+++++++|++|++.+|+||++|||+|+|||+++.+.+..+.+
T Consensus 1740 ~~~~------p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E- 1812 (2382)
T KOG0890|consen 1740 YTDT------PQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKME- 1812 (2382)
T ss_pred cccc------chhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhccccc-
Confidence 1111 111112244689999999999999999999999999999999999999999999999999665432211
Q ss_pred ccCCcchhhhhchHHHHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhhHh-HHHHHHHHHHhhcCCC
Q 000134 1512 SEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKN-VNGKVMSIMRGCLKDL 1590 (2096)
Q Consensus 1512 ~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~i 1590 (2096)
..| ....|+. +|.+|++|+.+|++++||+||||+|||||+|......+...++++.. ....|++.+++++..+
T Consensus 1813 -~~g----~~~~~l~-~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~l 1886 (2382)
T KOG0890|consen 1813 -KSG----RVLSLLK-AIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEHL 1886 (2382)
T ss_pred -ccc----cHHHHHH-HHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHHHHHHHHHHhC
Confidence 112 2334666 89999999999999999999999999999998655544444444433 3567899999999999
Q ss_pred CCchhhhhhHHhhhccccCchHHHHHHHHHHHHHHHhchhhHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCCCchhc
Q 000134 1591 PAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGNSANN 1670 (2096)
Q Consensus 1591 P~~~wl~~lPQLisRl~h~~~~v~~~l~~il~kv~~~yPqq~lw~l~~~~~S~~~~R~~~~~~Il~~~~~~~~~~~~~~~ 1670 (2096)
|+|+|||+++||+|||||||.+|+.++++||.+|+.+||||++|++++++||+++.|++||++|+++.+...+. ..+
T Consensus 1887 p~Y~f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~~YPqq~lW~~~a~~kS~~p~R~~R~keIL~k~~~~~~~---~~~ 1963 (2382)
T KOG0890|consen 1887 PTYQFYTAYSQLLSRICHPNQDVARVLKHIIAKLVLAYPQQTLWQSAALSKSNVPSRVERCKEILTKSRRQKPD---YKK 1963 (2382)
T ss_pred cchHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCchHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcc---HHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988876543 357
Q ss_pred hHHHHHHHHHHHHHHhhccCCccccccchhHhhHHH-HhhccCCcccccccccccccCCCCCCCCCCCCCCCCCCCCcce
Q 000134 1671 LFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSAL-KRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPT 1749 (2096)
Q Consensus 1671 li~~~~~l~~~Li~l~~~~~~~~~~~~~l~~~f~~l-~~~~~~~~i~P~~~~l~~~LP~~~~~~~~~~~~~~f~~~~~v~ 1749 (2096)
++.++..++++|+++|++++.++.+..+++.+|+.+ ....+..+++|+++.+.+++|..+.+...-..+.||+ ++.++
T Consensus 1964 l~~da~~lTe~L~~lcn~~v~~ss~~~sl~t~F~kl~~~~~~s~iliP~~~~M~ptlP~~~~~~~~h~~~~~f~-~~~~~ 2042 (2382)
T KOG0890|consen 1964 LLSDAYDLTEKLTNLCNKKVNSSSKVLSLKTDFRKLVMNRRFSDILIPLQSIMDPTLPLIDNNHATHSPFPPFQ-SHLPY 2042 (2382)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccccccHHHHHHHhccccChhhhhhhHhhhcccccccccCcccccCCCCCCC-Ccchh
Confidence 899999999999999999999888889999999833 3345678999999999999999877543323344666 48899
Q ss_pred EeeecCceEEecCCCcceEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecC
Q 000134 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2096)
Q Consensus 1750 I~~f~~~v~V~~S~q~PkrI~i~gsDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~ 1829 (2096)
|.||+|+|+|++|+||||||+++||||+.|+|||||+||||||.|+|+|+.+||++|+||.|+|||.|+||||+|+||++
T Consensus 2043 IsgF~d~V~Il~SLqKPKkI~l~GsDGk~Y~~lCKpKDDLRKD~RlMeFn~lin~lL~KD~eSRrR~L~IRTYaViPLne 2122 (2382)
T KOG0890|consen 2043 ISGFSDEVKILNSLQKPKKIKLRGSDGKIYPFLCKPKDDLRKDARLMEFNELINKLLRKDQESRRRKLYIRTYAVIPLNE 2122 (2382)
T ss_pred hhcchHHHHHHHhccCCeEEEEEcCCCCEeEEEeCchhhhhhhhHHHHHHHHHHHHHhhCHHHhhhcceeeEEEEeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHH
Q 000134 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAW 1909 (2096)
Q Consensus 1830 ~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w 1909 (2096)
+|||||||||+.++|+|+.++|..+|.+...+ ......+..+ .+...+.+.|+++++++||||||+||.++||+|.+|
T Consensus 2123 eCGiIEWv~nt~slR~IL~klY~~rg~~~~~~-~l~~~~~~~~-~~~~~~~~~F~~~~lpkfPPVFheWFl~~FPeP~sW 2200 (2382)
T KOG0890|consen 2123 ECGIIEWVPNTASLREILDKLYMTRGKWMIKK-QLRSVHLKKQ-MAKEEKGKVFREKLLPKFPPVFHEWFLESFPEPGSW 2200 (2382)
T ss_pred ccceEEecCCcchHHHHHHHHHHhccccchhh-HHHHhcCcHh-hcccchhhhhHHhhcccCCcHHHHHHHHhCCCchHH
Confidence 99999999999999999999998888876532 2211112121 123345678999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCCCCCCCCccccHHHHHhhcCCCccc
Q 000134 1910 FRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEG 1989 (2096)
Q Consensus 1910 ~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~~pE~VPFRLT~nmv~~mG~~G~eG 1989 (2096)
|.+|.+|+||+||||||||||||||||+||||||..||++|||||+|+|+||++|++||.|||||||||+|||||+|+||
T Consensus 2201 ~~SR~~Y~rTtAVMSmVGyIlGLGDRHgENILFDs~TGdcVHVDFnCLFnKGetlevPEiVPFRLT~NMidamGp~G~EG 2280 (2382)
T KOG0890|consen 2201 FASRNNYARTTAVMSMVGYILGLGDRHGENILFDSTTGDCVHVDFNCLFNKGETLEVPELVPFRLTQNMIDAMGPLGLEG 2280 (2382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccccccceeeecCCCcEEEEeecccccCCcccCCCCccceecchhHHhhcCCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCC-CCccccchhHHHHHHHHHHHhhccccccCCCCCCCCCH
Q 000134 1990 TFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKS-SGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAV 2068 (2096)
Q Consensus 1990 ~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~-~~~~~~n~~a~~~l~~i~~kL~g~~~~~~~~~~~~lsv 2068 (2096)
.||++||.||++||+|+++||++|++|+|||+++|.+.++. +..+..++ +.++..|++|++|.+. ..+.|+||
T Consensus 2281 ~Frk~cEiTLrLlR~n~e~LMSiL~tF~~DPlvew~~~~k~~s~~~i~e~--~~~i~~i~~rlqG~~~----~~glPLSv 2354 (2382)
T KOG0890|consen 2281 SFRKVCEITLRLLRKNRETLMSILETFVYDPLVEWNRPSKGRSPKKINED--RLVIGRIRGRLQGAMK----VDGLPLSV 2354 (2382)
T ss_pred hHHHHHHHHHHHHHhcchhHHHHHHHHHhCchhhccCcccCCCcCcccch--HHHHhHHHHHHhccCc----CCCCccch
Confidence 99999999999999999999999999999999999998776 33333332 8899999999999764 35679999
Q ss_pred HHHHHHHHHHHhCcchhhhcCCcccCCC
Q 000134 2069 EGQARRLIAEAVSHKNLGKMYIWWMPWF 2096 (2096)
Q Consensus 2069 ~~qV~~LI~~Atd~~nL~~My~gW~Pwl 2096 (2096)
+|||+.||++|||++|||+||+||+|||
T Consensus 2355 eGq~~~LI~eATseenL~~MYIGW~p~l 2382 (2382)
T KOG0890|consen 2355 EGQASSLIEEATSEENLSEMYIGWMPFL 2382 (2382)
T ss_pred hhHHHHHHHHhcCHHHHHHHHhhhhccC
Confidence 9999999999999999999999999997
|
|
| >KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-111 Score=1119.37 Aligned_cols=1332 Identities=21% Similarity=0.276 Sum_probs=873.0
Q ss_pred HHHHHHHHHHHH--hHHHHHhhcccCCCCCChhhh---HHHHHHHHHhcCCCCHHHHHHHHHhhcc----C-CChhHHHH
Q 000134 605 KVVKILEDLVLK--NRAILKQHIHEFPLLPSIAAL---TEVNKAIQEARGPMTLKDQLLAAVDGLN----H-ENLNVRYM 674 (2096)
Q Consensus 605 ~~~~il~~Li~~--n~~~L~~~i~~lp~Lp~ip~l---~~v~~~l~~~r~~~~l~~~l~~~~~~l~----~-en~~Vr~~ 674 (2096)
+...+..+...+ ..+.+...+..+-+ |+++.. .++..+++..|+.+...+.+..|+..-. + ++.-++..
T Consensus 1295 ~~l~~~~~~~~d~~kn~~i~~~~~lf~~-~~~~~~~~~~~~~~~~~~tr~~~s~l~~~~~lL~~~~~~~~~~~~~~~~f~ 1373 (2806)
T KOG0892|consen 1295 QRLAIGKLFATDEEKNETISFRICLFLP-FSDTFIFSNYRLMIHLRITRQHLSALTELSLLLGIARFHLKKLKPSFTDFD 1373 (2806)
T ss_pred hhHHHHHHHhhhhhhcchhhhhhhhccC-chhHHHHHHHHHHHHHHhcccchHHHHHHHHHhhhhhccccccCcccchHH
Confidence 344444444444 23344333333322 444443 3444566778898888888877763322 2 12224888
Q ss_pred HHHHHHHHHhhcHHHHHHHHhccCC-CCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCccCcccccccccc
Q 000134 675 VVCELSKLLKLKSEDVTALINGEAC-SDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQ 753 (2096)
Q Consensus 675 aL~eL~~~L~~~~~~l~~~~~~e~~-~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~r~~~~~~~ 753 (2096)
.|-+|.++.....+..+..+..+.. .+.......+-.||.-...........+++.+++.|+|..|.+|-+.+......
T Consensus 1374 ~l~~l~~~c~~~~~~~~~~~~a~~~~~~~~~~~~~~vNLl~~~~~~~~~~~~k~i~e~~~s~~~~~~~v~vs~~~~~~~~ 1453 (2806)
T KOG0892|consen 1374 KLFSLARQCCDFKGFCYDTIKAMEDIQDFGTWKKGYVNLLLNFEYEGDGFLREQIRELRSSMTGKNDWVDVSNKLRERSA 1453 (2806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHhhhcccchHHhHHhhhhccccCCcchhhhhhHHHHHhc
Confidence 9999999999998888887763322 222345555556665554433334557999999999999999998887764422
Q ss_pred ccccccc-----ChhhHHHHHHHHHHHHHHcCCChhhHhHHHHHHHHHHHHcCCCcccccCcchhhhhhhccccchhhhc
Q 000134 754 RFKIECS-----DDDLIFELIDKHLARAFRAAPDTIIQDSAALAIQELLKIAGCEASLDENVPASILQVLKDKEHLTVVA 828 (2096)
Q Consensus 754 ~~~~~~~-----~~~f~~~ll~~~Lv~af~s~~dt~~Q~~~A~AiQElLk~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 828 (2096)
.+.-... .......++...+..+|+--.=++.+ +=+.|-+.+..
T Consensus 1454 ~~~~~~~lkl~~~~~L~~~~~~~~~~~n~l~~~c~k~~---~~~~~~~~n~~---------------------------- 1502 (2806)
T KOG0892|consen 1454 RISMNNLLKLYFWTVLDAHFRKVLHSLNLLFWKCYKAR---SRELQDLHNKL---------------------------- 1502 (2806)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHH---HHHHHHHHHHH----------------------------
Confidence 2111000 00001111122222222222222222 01222222221
Q ss_pred ccCCCCCchhhhchhhhHHHHhhchhHHHH---hccccccccccCCCCCCCCCCCccc---------CC----CChHHHH
Q 000134 829 SGTMGSDNIHEMNMRGRKFWDRFSIYVKEI---IAPCLTSRFQLPSGSDSVSTGPIYL---------PS----MSFRRWI 892 (2096)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~W~~~p~~~r~~---l~P~ltS~Y~~~~~~~~~~~~Pi~~---------~~----~sy~~Wl 892 (2096)
.....+...|...|+.+-.+ ..|..+++-+....+......|++. -. .+++.|+
T Consensus 1503 ----------~s~~t~~~~~q~~~e~v~~~~~~~q~~~~~~~~~~~e~~~~~~~~v~~~~~~~L~~~~~~~~~~s~g~~i 1572 (2806)
T KOG0892|consen 1503 ----------FSTDTMGWFWQKSPEIVDLVHYYPQTDPRLCDTSNYEPSKDFLWKVICQDDCSLLFKLPILLDSSIGIQI 1572 (2806)
T ss_pred ----------HhhhhhhhHHhcCccceechhhcccCChhhhhhcccCchhhhhhchhccccceEEEEcCcccccchhhhh
Confidence 00124566899999987654 3333333322211111111122111 12 4566777
Q ss_pred HHHHH-HHHhhhcCCchhHHHHhhhhhhccHhHHHHhhHHHHHHHHhcCCHHH-HHHHHHHHHHHhccccCCCCCCc-cc
Q 000134 893 YYWIR-KLTVHATGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEA-RLGIAQEILSVLDAAASDHSGAS-VH 969 (2096)
Q Consensus 893 ~~w~~-~L~~~~~~~~~~iF~~c~~iir~D~~ia~fLLPylvl~il~~g~~e~-~~~I~~Ei~~VL~~~~~~~~~~~-~~ 969 (2096)
..+.. +++. .+....+|..-+++.-.+...+.-..|+....++.....|. ++-...+.+.+++-..-..+... .+
T Consensus 1573 ~~~~~~~n~~--~~~K~~i~~~dk~~~~~~~~~~~~~~~~~~~~il~~t~~es~s~w~s~~~ls~f~~c~~~~~~~~~st 1650 (2806)
T KOG0892|consen 1573 RMFFEGSNIM--ELTKNLIFPLDKITLDSFLKTLVSEEGSFIIDILQQTNNESLSNWLSEFALKLFNMCGRSSTTHSLST 1650 (2806)
T ss_pred hhccccchhh--hhhhhhccchhHHHHHHHHHHHhhccchhHHHHHhhhhccchhhHHHHHHHHHHHHHhccCCchhhcc
Confidence 65332 1111 12334566666666677778888888999988887543333 56666677777765432111000 00
Q ss_pred CCC-chhhhHHHHHHHHHHhhhH--------HHHHHHHHhhhhhcchhcccCCCCCCCCCcchhhHHHHHhhhHhhhccC
Q 000134 970 GIS-GQSEVCIQAIFTLLDNLGQ--------WVDDVKQELALSESLTSKQQGSKSKHPASSMHQDQLLTQCQYVSGLLSA 1040 (2096)
Q Consensus 970 ~~~-~~~~~~~q~vF~vlD~l~~--------W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~fL~~ 1040 (2096)
... ..... .|.|-..++...+ |+....+.+. ++-++.+ .+. |...
T Consensus 1651 ~~~~~~t~i-~~~i~~~l~~~s~~~~~~~~~~~~yi~~~~~------------~sl~~n~---~~~----------~~m~ 1704 (2806)
T KOG0892|consen 1651 YMANFSTSI-CQLIICLLLLESDFNPGNNLKQKDYIFELIL------------SSLLKNS---NSI----------FKMD 1704 (2806)
T ss_pred ccccccHHH-HHHHHHHHHhhccccHHHHHHHHHHHHHHHh------------hccccch---hHH----------HHHH
Confidence 000 11122 3555555554443 3333222211 1111111 011 1112
Q ss_pred CCHHHHHHHHHhchhHHHHHHHHHHHHhhhcCC------------------CCCccccCCCCChhhHHHHHHH----Hhc
Q 000134 1041 IPKVTLARASFRCQAYARSLMYFESHVREKSGS------------------FNPAAEKSGTFEDEDVSFLMEI----YSF 1098 (2096)
Q Consensus 1041 Ip~~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~------------------~~~~~~~~~~~~~~~~~~L~~I----Ya~ 1098 (2096)
+....+++++++|+++.-+..|.|......... ..|. ....+.....||++ |..
T Consensus 1705 ~ni~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~e~s~~~~t~~~~k----~k~~e~~~~~lqDil~~~y~~ 1780 (2806)
T KOG0892|consen 1705 MNILKYLRRQLGCHAFNPFEIYYWLPIVYSVAASTAYDCLLFEYSLLSLTIHSPK----NKRDELDITLLQDILKKAYES 1780 (2806)
T ss_pred HHHHHHHHHhhchhhhcchhhhccccHHHHHHHHHHHHHHHHHHHHHHHhhcCcc----cchhHHHHHHHHHHHHHHHhh
Confidence 333344555555555555555544332211100 0000 11124567788888 999
Q ss_pred CCChHHHHHHHHHhccCChhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccC
Q 000134 1099 LDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRI 1178 (2096)
Q Consensus 1099 LdEpDgl~Gi~~~~~~~sl~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~ 1178 (2096)
|++||+++|+-.-.. ... -+++.+|+.++|..|+..|+.+ .+.|.+ ..+.|.++.|++.|....+..|.+|+....
T Consensus 1781 I~~pD~lyG~~~~~~-~~~-~~l~~~~he~~w~~aL~~~d~~-~~~~ss-~~~~~~~~sLq~~g~~~I~~~y~~Gl~~~~ 1856 (2806)
T KOG0892|consen 1781 INCPDALYGIKRPTS-LKN-LILITAEHEKNWPRALSYYDLA-DMYPSS-EDEAGFINSLQNAGFFHILEFYIDGLKSND 1856 (2806)
T ss_pred CCCcchhcccCCccc-ccc-cccchhhhhhhHHHHHHhhcch-hhccch-HhHhHHHHHHHHhcchhHHHHHhcChhhhh
Confidence 999999999965211 111 4678899999999999999853 355655 456899999999999999999999998765
Q ss_pred hhhhhhHhHHHHHHHHhcCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhh
Q 000134 1179 PQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAP 1258 (2096)
Q Consensus 1179 p~~~~~~~~~~vEAAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~ 1258 (2096)
-.+..+.-...+|||||+|+||..-..... .. ......++..+.-++.|+++++.+.+...++.+|+..+..
T Consensus 1857 ~~~~~~~~e~~Ye~awr~g~Wd~~t~~~~~-~~-------~~~~~~y~e~~f~~l~al~ere~e~~yl~le~a~~~~v~~ 1928 (2806)
T KOG0892|consen 1857 KIDEPSNEELVYEAAWRLGKWDILTLSLVD-QN-------KTKGDYYHESLFEALRALHEREIEGSYLHLEDARNKKVLL 1928 (2806)
T ss_pred hhhhhhhhhhhHHHHHhcCCcccCCcchhh-hh-------hhhchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 545444445568999999999987544311 00 1134567788899999999999999999999999999999
Q ss_pred hhccchhhHHhhhHHHHHhhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhh
Q 000134 1259 LAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMV 1338 (2096)
Q Consensus 1259 Lsa~~~eSy~r~y~~l~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~v 1338 (2096)
+...+.++..--|+.+.+|+.+++++.+..+... ..+.+....+...|..-++...+.+...+.+..-++++
T Consensus 1929 i~~~see~~~~~y~~l~~L~~l~~l~~i~~l~~~--------~~~~~~~~~~~~k~~t~~q~~~~~~~~~~~~~~d~n~l 2000 (2806)
T KOG0892|consen 1929 INPNSEESSLSFYATLYDLQFLVTLEPIRCLQST--------ADKHQSNTDILQKWKTNLQLSSQLMECLSLLIEDRNVL 2000 (2806)
T ss_pred hcccchHHHHHHHHHHHHHHHHhhhhhhHhhhhh--------hcchhhhhHHHHHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988765420 12233445677788888887777777666666666665
Q ss_pred cCcCCCC--------chhHHHH----HHHHHHHHHcCChHHHHH---HHHHHhhcCCChHHHHHHHHHHHcCCchHHHHH
Q 000134 1339 FGASGLG--------AEVGNCW----LQYAKLCRLAGHYETATR---AILEAQASGAPNVHMEKAKLLWSTRRSDGAIAE 1403 (2096)
Q Consensus 1339 l~~~~~~--------~~~~~~W----L~~AklARKag~~~~A~~---all~a~~~~~~~~~iE~AKLLW~~g~~~~Ai~~ 1403 (2096)
+....+. +...... +.-.++||+-...+.-.+ ++-.+.....-....+.|...|+.+....+-+.
T Consensus 2001 ~s~~~l~~~l~~~~~~~~~~~l~~~g~e~~~la~~~~~~~~~~~~~r~~~~i~~~~~~~~~~s~aq~~~k~~~~~~~e~i 2080 (2806)
T KOG0892|consen 2001 LSLLQLHKQLSESQLADLASLLKYYGLELCKLAESFLIADLLQNIARAFPVIMLSIKLLCKFSLAQENLKHDIDKLSEAI 2080 (2806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhchhhHHhHHHhhHHHHHHHHHHhhhhhhhhhccchhhhhHHHH
Confidence 5432111 1111111 223344444333332222 222222111122333444444444443333333
Q ss_pred HHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHh
Q 000134 1404 LQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSR-VREL 1482 (2096)
Q Consensus 1404 L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~-a~~l 1482 (2096)
|-....++... .. .. ++.+.++. .....-..+..+|+|+.++....+..|++.|.+ +...
T Consensus 2081 L~~~~~kne~~--~~-----~s--~~~~~~~~----------lk~~~~~~~a~~g~Wlaetk~ens~~i~e~yl~~a~~~ 2141 (2806)
T KOG0892|consen 2081 LWQRDEKNEAI--IS-----LS--ESLAKNNS----------LKEFPSDIYAVLGKWLAETKSENSALISEKYLEKAVSL 2141 (2806)
T ss_pred HHHHHhhhhHH--HH-----HH--hhhhhcch----------hhhhHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 33333221110 00 00 00011110 011223467788999999988888888888853 3322
Q ss_pred cc--ch----------HHHHHHHHhhhHHHHHHHHhhhh-hcc------------cCCc---------------------
Q 000134 1483 QP--MW----------EKGYFYMAKYCDDVLVDARKRQE-ENS------------EIGP--------------------- 1516 (2096)
Q Consensus 1483 ~~--~w----------eK~~~~la~y~d~l~~~~~~~~e-~~~------------~~g~--------------------- 1516 (2096)
.. .| .++|+++|+|-|..+.+.+.+.. ... ..+.
T Consensus 2142 ae~~d~e~~~~~~~~~s~a~~~~akysd~~~~~~~~~~~sse~et~~~l~k~~~~~~~~~~er~~q~~~~~~~~~~rq~~ 2221 (2806)
T KOG0892|consen 2142 AEHYDNESCKALIYCQSFAQFCLAKYSDPDYQEDEERRSSSEFETLKDLQKLERSTVEASNEREEQMRKNHHVRVQRQLI 2221 (2806)
T ss_pred hhhcchhHHHHHHhHHHHHHHHHHhccCchhhhHHHHHhHHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 21 22 36899999998888742211000 000 0000
Q ss_pred -chhh-------hhchHHHHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhhHhHHHHHHHHHHhhcC
Q 000134 1517 -SEKR-------WWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLK 1588 (2096)
Q Consensus 1517 -~~~~-------~~~~l~~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 1588 (2096)
++.+ -..++..|+++|++++..|++|....+.|.+++||+++. ..+++..|.+.+.
T Consensus 2222 lDe~~l~~l~~~r~~fL~~Alt~Yl~cl~~~~~~D~~~i~R~cslWfsns~----------------~~evn~~mk~~i~ 2285 (2806)
T KOG0892|consen 2222 LDEEELLALSEDRSKFLTLALTNYLNCLSESDEYDVDLIFRCCSLWFSNSH----------------LKEVNNSLKHEIQ 2285 (2806)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccccHHHHHHHhhhhccccc----------------hHHHHHHHHHHhc
Confidence 0100 125788999999999999999999899999999999765 2467888899999
Q ss_pred CCCCchhhhhhHHhhhccc-cCchHHHHHHHHHHHHHHHhchhhHHHHHHHhhcCCC-------------hhHHHHHHHH
Q 000134 1589 DLPAYQWLTVLPQLVSRIC-HQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTI-------------PSRREAAAEI 1654 (2096)
Q Consensus 1589 ~iP~~~wl~~lPQLisRl~-h~~~~v~~~l~~il~kv~~~yPqq~lw~l~~~~~S~~-------------~~R~~~~~~I 1654 (2096)
.+|.|+|++++.||.|||. ..+.++...+..++.+++.+||++++|.++++..... ..|...+.-+
T Consensus 2286 ~ipsyKFip~~yQlAaRl~~~~~~~fq~~L~~Li~r~~~dhPyhtly~L~~L~~~~rd~e~~n~sr~sl~~~rki~a~l~ 2365 (2806)
T KOG0892|consen 2286 TVPSYKFIPLVYQLAARLGNSENNSFQKSLTSLIYRVGRDHPYHTLYQLLSLVNAVRDNEDENRSRGSIDRDRKIAAELD 2365 (2806)
T ss_pred cCCcchhHHHHHHHHHHhccccCchHHHHHHHHHHHHhccCchHHHHHHHHHHhcCcChhhhhhcccccchhHHHHHHHh
Confidence 9999999999999999999 6888999999999999999999999999998764322 2223333333
Q ss_pred HHHHHhcCCCCCchhchHHHHHHHHHHHHHHhhccCCccccc----cchhHhhHHHHhhccCCcccccccccccccCCCC
Q 000134 1655 IQAAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRT----INISTEFSALKRMMPLGIIMPIQQSLTVTLPPQD 1730 (2096)
Q Consensus 1655 l~~~~~~~~~~~~~~~li~~~~~l~~~Li~l~~~~~~~~~~~----~~l~~~f~~l~~~~~~~~i~P~~~~l~~~LP~~~ 1730 (2096)
+...... ..+.+.++..+++.+|.+||.+ .....+ +++...+..++.....++ ..|+..
T Consensus 2366 ~~~v~~~------~~~~v~~v~~lc~~yI~lAnl~-~~q~~t~~k~v~~p~~~~~~K~~nl~~v----------~~pT~e 2428 (2806)
T KOG0892|consen 2366 LCDVNQG------AGNMVRQLECLCEAYISLANLK-TSQNDTTSKLVRLPGYQWFLKQLNLEGV----------PPPTMN 2428 (2806)
T ss_pred hhHhhcc------chhHHHHHHHHHHHHHHHhcCc-ccccchhhhhhcCccccHHHhhhhccCC----------CCCCCC
Confidence 4333322 2378999999999999999943 222222 333333333332211111 222222
Q ss_pred CCCCCCCCCCCCCCCCcceEeeecCceEEecCCCcceEEEEEecCCCeeeEEec-CCCcchhhHHHHHHHHHHHHHhccC
Q 000134 1731 ANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCK-PKDDLRKDSRMMEFTAMINRLLSKY 1809 (2096)
Q Consensus 1731 ~~~~~~~~~~~f~~~~~v~I~~f~~~v~V~~S~q~PkrI~i~gsDGk~y~fL~K-~~dDlR~D~R~mQl~~liN~lL~~~ 1809 (2096)
..+...+ ..++.|+|.+|.+++.+.++.+.||.|++.||||++|..||| ++||||||+.|.|+|+++|++|.++
T Consensus 2429 v~v~~s~-----~~~~~p~i~s~~~~v~~~~GinaPkiI~c~gSDG~~~kqLVK~gnDDLRQDAVMeQvF~~vN~lL~~~ 2503 (2806)
T KOG0892|consen 2429 VKVNDSG-----DYGNIPTVVSFDDTVTFAGGINAPKVITCVGSDGKTYKQLVKGGNDDLRQDAVMEQVFGQVNTFLQND 2503 (2806)
T ss_pred ccccCCc-----ccCCCceEEecccceeeecCccCCeEEEEEccCchhHHHHHhcccchHHHHHHHHHHHHHHHHHhhcc
Confidence 2221111 236889999999999999999999999999999999999999 7999999999999999999999999
Q ss_pred CcccCCCeeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCcc----ccCChHHHHHHHHHhcCCChHH--HH
Q 000134 1810 PESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDR----QKTNPQIKRIYDQFQGKIPEDE--ML 1883 (2096)
Q Consensus 1810 ~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~ 1883 (2096)
+++++|+|.||||+||||++..|+||||.|++|+.+++...- .|.+.+ +...+..++.+...+.+. .++ ..
T Consensus 2504 ~et~krkL~irTYKVvPls~~sGvlEwv~~tiplgeyLv~~~--~gah~ry~p~d~s~~~crk~m~~~q~k~-~E~r~k~ 2580 (2806)
T KOG0892|consen 2504 RETRKRKLSIRTYKVIPLSPKAGVLEWVTNTIPLGEYLVVES--GGAHKRYRPNDWSLSKCRKLMSEVQKKS-LETRLKA 2580 (2806)
T ss_pred HHHHhcccceeEEeeeecCcccceeecccCCeehhhhhcccC--CccccccCCCCCChHHHHHHHHHHhccc-HHHHHHH
Confidence 999999999999999999999999999999999999986311 233222 122345555555444332 222 24
Q ss_pred HHhhcCCCchHHHHHHHhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCC
Q 000134 1884 KTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL 1963 (2096)
Q Consensus 1884 ~~~i~~~~~pvl~~wf~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~ 1963 (2096)
..++|+.|.||||.||++.||+|..||++|++||||.|+.|||||||||||||..|||||..||+|||||||.+|++|+.
T Consensus 2581 y~~vc~n~~PvfryFflEkF~dP~~WFekrlaYTrsvA~sS~VGyILGLGDRH~qNILid~~taEviHIDlGiAFEQGki 2660 (2806)
T KOG0892|consen 2581 YDKVCRNIRPVFRYFFLEKFPDPADWFEKRLAYTRSVAASSMVGYILGLGDRHGQNILIDQQTAEVIHIDLGIAFEQGKI 2660 (2806)
T ss_pred HHHHHhhchHHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHHHHhcccchhhhheeecccccceEEEeeeeehhcCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccHHHHHhhcCCCccchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCC-------CCccc-
Q 000134 1964 LEKPELVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKS-------SGVEV- 2035 (2096)
Q Consensus 1964 l~~pE~VPFRLT~nmv~~mG~~G~eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~-------~~~~~- 2035 (2096)
+|.||.|||||||++||+||++||||+||+|||.||.+||++++.+++|||+++||||.+|..++.+ .+-+.
T Consensus 2661 lptPE~VPFRLTRDiVdgmGItGveGvFrRccE~t~~vlR~~~~~lltileVl~yDPLf~W~msplK~~~~q~~e~~e~~ 2740 (2806)
T KOG0892|consen 2661 LPTPETVPFRLTRDIVDGMGITGVEGVFRRCCEFTLEVLRREKESLLTILEVLLYDPLFSWLMSPLKALKKQKEEDEENF 2740 (2806)
T ss_pred CCCCCcccceeehhhccccCccCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcchHHHhhcHHHHHHHHHhhcchhc
Confidence 9999999999999999999999999999999999999999999999999999999999999876421 11111
Q ss_pred -----------cchhHHHHHHHHHHHhhccccccCCCCCCCCCHHHHHHHHHHHHhCcchhhhcCCcccCCC
Q 000134 2036 -----------ENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGKMYIWWMPWF 2096 (2096)
Q Consensus 2036 -----------~n~~a~~~l~~i~~kL~g~~~~~~~~~~~~lsv~~qV~~LI~~Atd~~nL~~My~gW~Pwl 2096 (2096)
.+..+.+++-++++||.|+..|. .+||++||+.||++||||.|||.|||||.||+
T Consensus 2741 n~~~~~~~~~~nd~~a~r~l~r~q~kl~g~e~g~------~~sVe~qv~~LIqqA~dpsnLs~~fpGW~a~~ 2806 (2806)
T KOG0892|consen 2741 NLSGNITEDASNDRNAVRALMRAQRKLDGVEQGT------MLSVEAQVQELIQQATDPSNLSLMFPGWSAFQ 2806 (2806)
T ss_pred ccccchhhhhccchHHHHHHHHHHHHhhhhhccc------cccHHHHHHHHHHHhcCchhhhhhcCCCcCcC
Confidence 13567889999999999987653 67899999999999999999999999999995
|
|
| >KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-86 Score=908.81 Aligned_cols=975 Identities=27% Similarity=0.438 Sum_probs=753.9
Q ss_pred ccCCCHHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH-hccCC
Q 000134 1038 LSAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-HKSLS 1116 (2096)
Q Consensus 1038 L~~Ip~~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~-~~~~s 1116 (2096)
-..|+..+|...+..|++|+.||+|.|..+.... ..+.++.|.-+-..++-+|.+.|+... ++...
T Consensus 1220 plpi~~~~L~~~~~~c~a~~~~l~y~el~~~~~~-------------~~~~i~sl~~~~~~~q~~~~a~~i~~~a~~~~~ 1286 (2341)
T KOG0891|consen 1220 PLPIPIKTLGLYAEKCRAYAKALHYKELEFLKEP-------------SPDTIESLISINNKLQQREAAIGVLKYAQQHSE 1286 (2341)
T ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhcc-------------chhHHHHHHhhcccchhHHHhccHHHHHHhHHH
Confidence 3467778999999999999999999999887541 236789999999999999999999763 44557
Q ss_pred hhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhh-ccChhhhhhHhHHHHHHHHh
Q 000134 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLI-SRIPQYKKTWCMQGVQAAWR 1195 (2096)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~-~~~p~~~~~~~~~~vEAAWr 1195 (2096)
++.+..++|+..+|++|+.+|+........+.+...|.++|+..+|+|+-+.......+ ....+......+.++.++|-
T Consensus 1287 l~~~e~w~e~l~~~~d~l~a~~~~~~~~~~~~e~~~g~~~~~~~lg~w~~l~~~~~~~~~~~~~~~~~~~ap~a~~~~~~ 1366 (2341)
T KOG0891|consen 1287 LQLKETWYEKLHRWEDALAAYELREKAGDSSFELRMGKMRCLEALGDWDELSQLASEKWEVAGQEAKHKMAPLAAAAAWG 1366 (2341)
T ss_pred HHHhhhcccccccchhHhhhhhcccchhhhhHHHHhhhhhhhhhhhhHHHHhhhhcccCCCcchhHHHHHHHHHHHhhhc
Confidence 88889999999999999999997766666677888999999999999998874332211 12222345577889999999
Q ss_pred cCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHH
Q 000134 1196 LGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIV 1275 (2096)
Q Consensus 1196 lg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~ 1275 (2096)
+++|+.+.+|+...+. .+++..++++..++.+.+.......++..|..+..++++...|||.|+|-.++
T Consensus 1367 ~~~w~~~~~~~s~~~~-----------~~~~~~~~~a~~a~~~~~~~~~~~~~~~~~dll~~e~~~~~~Es~sr~y~~~~ 1435 (2341)
T KOG0891|consen 1367 LGQWDTMAEYVSVMSE-----------DSQDKAFFRAILALHRDEFEKAVKLIERARDLLDTELTAMAGESYNRAYGVMV 1435 (2341)
T ss_pred cccchhhhhhcccccc-----------cchhhHHHHHHHhhhhhHHHHHHHhcccHHHHHHHHHHHHHhhHHhhchhhhh
Confidence 9999999998876653 36777788999999888888778888899999999998888899999999999
Q ss_pred HhhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHH
Q 000134 1276 KLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQY 1355 (2096)
Q Consensus 1276 kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~ 1355 (2096)
.-+++.|+|+++.+.... .....+.+.|..|+..++....+|+.+|.+|..++++. +.+..|+++
T Consensus 1436 ~~~~~~e~E~~~~~k~~~-----------~r~~~i~~~~~~~l~~~q~~~~~wq~~lr~~~~v~~p~----~~~~~~ik~ 1500 (2341)
T KOG0891|consen 1436 RAQMLAELEEIIEYKKLP-----------ERRPIIAKTWWKRLQGCQKNVDDWQRILRVRSLVLSPQ----EDMEMWIKF 1500 (2341)
T ss_pred hhhhhhhHHHHHHhhccc-----------chhHHHHHHHHhhHHHhhccHHHHHHHHHHhhhccCCC----cchHHHHHH
Confidence 999999999999987521 34456788999999999999999999999999999986 447789999
Q ss_pred HHHHHHcCChHHHHHHHHHHhhc------------CCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1356 AKLCRLAGHYETATRAILEAQAS------------GAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1356 AklARKag~~~~A~~all~a~~~------------~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
|-+|||+|+...+...+.....- ..|.......|++|..+....|++.++.....+..+. ....
T Consensus 1501 a~~cr~s~~~~l~~~~l~~~L~~~~~~~~~~~~~~~~P~~v~a~~~~~~~~~~~~~~~~~~~~~~s~l~~d~----~~~~ 1576 (2341)
T KOG0891|consen 1501 ASLCRKSGRLALARKLLNELLERDPSSDLPLPLKARLPQVVYAYLKYLWATDSKDEAINTLQEFTSTLNSDL----GSDP 1576 (2341)
T ss_pred HHHhHHhHHHHHHHHHHHHHHhcCccccccccccccChHHHHHHHhHHHhhccchHHHHHhHHHHHHHHhhc----CCCc
Confidence 99999999999998877654311 1467889999999999999999999987765332110 0000
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhccchHHHHHHHHhhhHH
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQ----KQKEDVITLYSRVRELQPMWEKGYFYMAKYCDD 1499 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~----~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~ 1499 (2096)
.... ..+ ..........+.|++++..|.|-...-. .....+...|..|+..++.|+|+|+.||.-++.
T Consensus 1577 -~~~~---~~~----~~~~~~~~~~l~a~~~l~~~~w~~~~~~s~~~~~~~~~L~~y~~at~~d~~~ykawh~~a~a~f~ 1648 (2341)
T KOG0891|consen 1577 -DELL---SEP----TEAEKQEYTKLLARCFLKLGEWQQLLQDSWRTSALDGILQSYLLATQFDRGWYKAWHQWALANFE 1648 (2341)
T ss_pred -hhhh---hcc----cchhhhHHHHHHHHHHHhhccccccccCCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 0000 000 0011223456789999999999864322 224677889999999999999999888775544
Q ss_pred HHHH--HHhhh-h---hc---c--cCC--cchhhhhchHHHHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCC
Q 000134 1500 VLVD--ARKRQ-E---EN---S--EIG--PSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGS 1566 (2096)
Q Consensus 1500 l~~~--~~~~~-e---~~---~--~~g--~~~~~~~~~l~~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~ 1566 (2096)
.... ...+. . .+ . ..| .+.....+|+..++.+|++++....+.-.|.+.|+++|||++|...
T Consensus 1649 ~V~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~avk~ff~~~~~~~~s~lqdtlrl~~L~f~~g~~~----- 1723 (2341)
T KOG0891|consen 1649 VVQMLKQVTKAKYAPGANIWNMPDYLGSNSDLMLIHHYAVPAVKGFFRSISLSPGSSLQDTLRLLTLWFDFGDNK----- 1723 (2341)
T ss_pred HHHhhhhhhccccCCccccccchhhccCcCCccchHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHhcCCCc-----
Confidence 3211 00000 0 00 0 000 0111124588899999999999877777899999999999999631
Q ss_pred CChhhhHhHHHHHHHHHHhhcCCCCCchhhhhhHHhhhccccCchHHHHHHHHHHHHHHHhchhhHHHHHHHhhcCCChh
Q 000134 1567 SSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPS 1646 (2096)
Q Consensus 1567 ~~~~~~~~~~~~v~~~~~~~~~~iP~~~wl~~lPQLisRl~h~~~~v~~~l~~il~kv~~~yPqq~lw~l~~~~~S~~~~ 1646 (2096)
.+...+...+..+|.+.|+.++|||++||.-+...+.+++..++..+++.+||+..|++.++.+|....
T Consensus 1724 -----------~v~q~i~~~~~~~~i~~wl~~ipqLiari~~~~~~~~~l~~~ll~dig~~~pqA~iy~ltvas~s~~~~ 1792 (2341)
T KOG0891|consen 1724 -----------DVYQALLEGINLIPIDTWLEVIPQLIARIHTPDQLVVQLVLQLLSDIGRAHPQALVYPLTVASKSKSVA 1792 (2341)
T ss_pred -----------hHHHHHHhhhhHhhHHHHHHhHHHHHHHHhccchHHHHHHHHHHHHhhhcchhhhhHHHHHHHhcchHH
Confidence 145556677888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCchhchHHHHHHHHHHHHHHh------hccCCcccccc-----------------------
Q 000134 1647 RREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDHLIKLC------FHAGQSKSRTI----------------------- 1697 (2096)
Q Consensus 1647 R~~~~~~Il~~~~~~~~~~~~~~~li~~~~~l~~~Li~l~------~~~~~~~~~~~----------------------- 1697 (2096)
|+..+..|+++++.+++ .++++..-.++++++++ ++++.+.+...
T Consensus 1793 r~~~a~~ile~m~~~~~------~Lv~~a~lvs~elir~a~lwhe~w~e~ldeAsr~yf~~~nv~~m~~~l~p~~~~l~~ 1866 (2341)
T KOG0891|consen 1793 RQKAALSILEKMREHSP------TLVRQARLVSEELIRVAILWHEQWHEGLEEASRLYFSDHNVEGMFAVLRPLHEMLER 1866 (2341)
T ss_pred HHHhHHHHHHHHHHhhH------hhhhhhhhhHHHHHHHHhhhHhhhhhccHHHHHHHhhHhhHHHHHHHHhHHHHHhhc
Confidence 99999999999998876 56677777777777765 33333221111
Q ss_pred --------chhHhhH--------HHHhhccCCccccccc--------------------cc-----cc-ccCCCCCCCCC
Q 000134 1698 --------NISTEFS--------ALKRMMPLGIIMPIQQ--------------------SL-----TV-TLPPQDANLTE 1735 (2096)
Q Consensus 1698 --------~l~~~f~--------~l~~~~~~~~i~P~~~--------------------~l-----~~-~LP~~~~~~~~ 1735 (2096)
++...|+ ..++....+.+.-+.+ .+ +. -++..+.....
T Consensus 1867 ~~~t~~e~sFqqt~g~dl~ea~~~~~~~~~~~~~~dL~qawdly~~vf~ki~~ql~~l~sl~l~~vSp~L~~~~dlel~v 1946 (2341)
T KOG0891|consen 1867 GPQTLKEHSFQQTYGRDLKEAYEWVQKFEQSGDVKDLNQAWDIYYNVFKKIRKQLPQLTSLDLQYVSPKLLSAKDLELAV 1946 (2341)
T ss_pred CCcchhhhhhHHhhChhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccccccccceecc
Confidence 1111000 0000000000000000 00 00 01111222223
Q ss_pred CCCCCCCCCCCcceEeeecCceEEecCCCcceEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCC
Q 000134 1736 SPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRR 1815 (2096)
Q Consensus 1736 ~~~~~~f~~~~~v~I~~f~~~v~V~~S~q~PkrI~i~gsDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR 1815 (2096)
++.|.|- ...+.|.+|.+++.|+.|+||||++.|+||||+.|.|++|+++|+|||+|+||+|+++|.++..++++.||
T Consensus 1947 Pgty~~~--~~~i~i~~f~~~~~vitskqRprkl~i~gs~g~d~~~~lkghed~rQD~RvmQLf~Lvn~ll~~d~~~~rr 2024 (2341)
T KOG0891|consen 1947 PGTYDPG--KPIIRIQSFEPKFNVITSKQRPRKLVIRGSDGKDYQYLLKGHEDLRQDERVMQLFGLVNTLLANDSETFRR 2024 (2341)
T ss_pred CCccCCC--ceEEehhhccHHHHHHHHHhhhHHHhhcccchhhHHHHhhchhhhhhHHHHHHHHHHHHHHhccChHHHHH
Confidence 3333322 46789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhc------CCChHHHHHHhhcC
Q 000134 1816 KLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQG------KIPEDEMLKTKILP 1889 (2096)
Q Consensus 1816 ~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~ 1889 (2096)
+|.|..|.|+|++++.|+|+||||+.|++.++.++.... +.. .+...+.+ .+... -+.+.+.|...+..
T Consensus 2025 ~L~iq~Y~~i~ls~~sgL~gWv~~~dtlh~L~r~~r~~k-~i~---l~~eh~~~-~~~~l~~~~ltl~qk~~vfe~~~~~ 2099 (2341)
T KOG0891|consen 2025 NLTIQRYSVIPLSPDSGLIGWVPNCDTLHTLIREYREKK-KIP---LNIEHRVM-LQMAPDYDHLTLMQKVEVFEYALSN 2099 (2341)
T ss_pred HHHHHHhhhcCCCCCCceeeeecccccHHHHHHHHHHhh-ccC---CcchHHHH-HhcCccccchhhhhHHhHhHHHhhc
Confidence 999999999999999999999999999999998876544 211 12111111 11100 12344556666666
Q ss_pred CCchHHHHHHHhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCC-CCC
Q 000134 1890 MFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE-KPE 1968 (2096)
Q Consensus 1890 ~~~pvl~~wf~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~-~pE 1968 (2096)
.-...+++-++-..+.++.|+..|.+||+|.|+|||+|||+|+|||||+|.|+++.||+++|||||.||+....++ +||
T Consensus 2100 t~G~dl~~~lwlkS~ssEaw~~rrt~yt~S~A~msmvgyilGlGdrhpsNlmldr~tgkvihidfgdcfevA~~rek~pe 2179 (2341)
T KOG0891|consen 2100 TQGDDLYKVLWLKSPSSEAWLDRRTNYTRSLAVMSMVGYILGLGDRHPSNLMLDRLTGKVIHIDFGDCFEVAMLREKFPE 2179 (2341)
T ss_pred CcHHHHHHHHHHhCCChhHHHHHhhhhHHHHHHHHHHHHHhhccccchhhhhhhhcccceEEechHHHHHHHHhhccccc
Confidence 6666777777778899999999999999999999999999999999999999999999999999999999999887 699
Q ss_pred CCCccccHHHHHhhcCCCccchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCC-----------------
Q 000134 1969 LVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSS----------------- 2031 (2096)
Q Consensus 1969 ~VPFRLT~nmv~~mG~~G~eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~----------------- 2031 (2096)
.+||||||+.+++|.+.|.+|.|+.+|+.+++++|.+++.+|+++++|+|||++.|.......
T Consensus 2180 ~~pfRlTrmli~amev~gl~g~~~~t~e~v~~~lr~~~~sl~a~leafvydplinwr~~~~~~~~~~~~~~~~~~~~~~~ 2259 (2341)
T KOG0891|consen 2180 KVPFRLTRMLINAMEVTGIEGTYRITCEHVMRVLRTNKESLMAVLEAFVYDPLINWRLDDVLSPGKDEEEVGEKDPLKNR 2259 (2341)
T ss_pred cccHHHHHHHHHhHHHHhhhhHHHHHHHHHHHhhcCChHHHHHHHHhhhcccchhhhcccccchhhhhcccCCCCcccch
Confidence 999999999999999999999999999999999999999999999999999999998752100
Q ss_pred ----------C---c----c----ccchhHHHHHHHHHHHhhccccccCCCCCCCCCHHHHHHHHHHHHhCcchhhhcCC
Q 000134 2032 ----------G---V----E----VENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGKMYI 2090 (2096)
Q Consensus 2032 ----------~---~----~----~~n~~a~~~l~~i~~kL~g~~~~~~~~~~~~lsv~~qV~~LI~~Atd~~nL~~My~ 2090 (2096)
+ . + ..|+.+..+++++..++.|+ +..+..+++|..||..||++||+|+|||+-|+
T Consensus 2260 ~e~~~~~a~~~~~~~~~~~~~~~e~~n~~~~~vl~~~~~kltg~----~~~~~~~l~v~~qv~~l~~qats~e~lc~~yi 2335 (2341)
T KOG0891|consen 2260 KELGLPRAMAGEEIAVLESSVKPEALNARAIQVLKRISDKLTGR----DFVHEEPLDVPEQVEKLIQQATSPENLCQCYI 2335 (2341)
T ss_pred hhhccHHhhhccccccccccccccccChhhHHHHHhccccccee----eccCcccCcHHHHHHHHHHhhcChHhhhcccc
Confidence 0 0 0 01223344566666666654 34456789999999999999999999999999
Q ss_pred cccCCC
Q 000134 2091 WWMPWF 2096 (2096)
Q Consensus 2091 gW~Pwl 2096 (2096)
||||+|
T Consensus 2336 gwcpfw 2341 (2341)
T KOG0891|consen 2336 GWCPFW 2341 (2341)
T ss_pred cCCCCC
Confidence 999965
|
|
| >KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-77 Score=816.80 Aligned_cols=1034 Identities=18% Similarity=0.254 Sum_probs=742.3
Q ss_pred HHHhhhhhhccHhHHHHhhHHHHHHHHhcCCHHHHHHHHHHHHHHhccccCCCCCCcccCCCchhhhHHHHHHHHHHhhh
Q 000134 911 FNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEARLGIAQEILSVLDAAASDHSGASVHGISGQSEVCIQAIFTLLDNLG 990 (2096)
Q Consensus 911 F~~c~~iir~D~~ia~fLLPylvl~il~~g~~e~~~~I~~Ei~~VL~~~~~~~~~~~~~~~~~~~~~~~q~vF~vlD~l~ 990 (2096)
..+++.+.-+|...++.+.=+++..+...-+++++.++..++...+..+. .. . ...|-- .-++
T Consensus 2339 l~~l~~i~~~~~~~a~~~w~~~Fp~~w~~l~~de~~~~~~~~i~flS~~~------h~--~---q~~~~p------nvln 2401 (3550)
T KOG0889|consen 2339 LDPLLQIQHHDDKVAEKLWVGLFPIVWSSLSKDEIRNLAGSIIPFLSSGY------HI--K---QQGCRP------NVLN 2401 (3550)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhhcCHhhhhcccchhccccccch------hh--h---hhccch------hHHH
Confidence 33445556678899999999999999998888888888888888775321 11 0 011111 1123
Q ss_pred HHHHHHHHHhhhhhcchhcccCCCCCCCCCcchhhHHHHHhhhHhhhccCCCHHHHHHHHHhchhHHHHHHHHHHHHhhh
Q 000134 991 QWVDDVKQELALSESLTSKQQGSKSKHPASSMHQDQLLTQCQYVSGLLSAIPKVTLARASFRCQAYARSLMYFESHVREK 1070 (2096)
Q Consensus 991 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~fL~~Ip~~lLA~aA~~C~ayaRAL~ylE~~~r~~ 1070 (2096)
.|+...-+ +... -.+|+.++..-+-.-|+|.+++.++|.+.-..
T Consensus 2402 ~~v~s~~~-----------------------------------~~~~-~~lpp~Li~yl~kt~~~wh~~I~lLE~~~~~~ 2445 (3550)
T KOG0889|consen 2402 ALVESLVK-----------------------------------IVPP-IELPPHLIKYLGKTYNLWHTSIRLLEDHQSNK 2445 (3550)
T ss_pred HHHHHHHh-----------------------------------hccC-CCCCHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 33332110 0111 16899999999999999999999999987654
Q ss_pred cCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHhHhhcCHHHHHHHHHHHHccCCC----
Q 000134 1071 SGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKKSGNWAEVFTSCEQALQMEPT---- 1146 (2096)
Q Consensus 1071 ~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~E~~G~W~~A~~~YE~~Lq~~p~---- 1146 (2096)
.... ....++..++|.+||..|+|-|+.+|+|+.+.....+.+++.||+.|.|+.||..||++.-+.-.
T Consensus 2446 ~~~~-------~~~~~~~~dsl~elY~~L~E~Dm~~Glwrrr~~~~eT~~a~s~eQ~G~~e~AQ~lyekaq~Ka~~~~~~ 2518 (3550)
T KOG0889|consen 2446 EMEN-------TKGDESCLDSLAELYRSLNEEDMFYGLWRRRAKFPETMVALSYEQLGFWEEAQSLYEKAQVKAREGAIP 2518 (3550)
T ss_pred Hhhh-------hhhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhccHHHHHHHHHHHhhhHHHHhhHHHHHHHHHhcccCC
Confidence 2110 01134668999999999999999999999999999999999999999999999999999753221
Q ss_pred --chh---hhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhhHHHhhcccCccCccccCCCC
Q 000134 1147 --SVQ---RHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSES 1221 (2096)
Q Consensus 1147 --~~~---~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~ 1221 (2096)
..+ .+-.|++|..+|.|||.+.+++....+ +..-+|||||+.+|..+++.+.+..+ +...
T Consensus 2519 ~~~~Ey~lWed~WI~Ca~eL~QWdvl~e~~k~~~~---------~~llle~aWrlsdw~~~~~~l~~~~~------~~~~ 2583 (3550)
T KOG0889|consen 2519 YSESEYKLWEDHWIRCASELQQWDVLTEFGKHEGN---------YELLLECAWRLSDWNDQKDALEQKAK------SLSD 2583 (3550)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---------ceeeeehhccCCcchhHHHHHHHhhh------ccCC
Confidence 122 234799999999999999998854221 24668999999999999998876553 2234
Q ss_pred CcchhHHHHHHHHHHHccCch---hHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhhhhhHHHHHHHhhhccccc-c
Q 000134 1222 NASFDMDVAKILQAMMKKDHF---SVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFL-E 1297 (2096)
Q Consensus 1222 ~~~f~~~l~kaL~al~~~d~~---~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH~L~ELee~~~~~~~~~~~-~ 1297 (2096)
...|...+++++.++.+.+.. ++...|.++-+.-+..|.+.+..+++.+++++..+|++.|++|+..+..+.... .
T Consensus 2584 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~e~~~l~i~~w~~lP~~v~~~h~~lL~~~QqivEl~Ea~~I~s~l~~~n~ 2663 (3550)
T KOG0889|consen 2584 VPGFRKELYDAFLALQKKNSNGVGEFERLIGEAIQLAIREWRQLPERVNHGHVPLLQAFQQIVELQEAAQIYSDLNDGNV 2663 (3550)
T ss_pred CCcHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCccccchhhHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 457888999999998876554 566778888888888999999889999999999999999999999887542211 1
Q ss_pred ccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcC-----C----------------CCchhHHHHHHHH
Q 000134 1298 KSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGAS-----G----------------LGAEVGNCWLQYA 1356 (2096)
Q Consensus 1298 ~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~-----~----------------~~~~~~~~WL~~A 1356 (2096)
++....-.+++.++++|++|++.+++++..|+.+..||+++|+.. . .-.+.++.-+++|
T Consensus 2664 ~n~~~~~~d~Ksil~~Wr~RlP~~~Dd~~~Wsdl~~WRq~~y~~I~~~~~~~~~~~~~~~ns~~~~~Gyhe~A~~in~fa 2743 (3550)
T KOG0889|consen 2664 QNLDNKAQDIKSILQTWRDRLPNVWDDMNQWSDLITWRQHAYSMINKAYLPLVPYKQNASNSNNLYRGYHELAWAINRFA 2743 (3550)
T ss_pred cccchhHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHhcccchhhhccCCcchHHHhHHHHHHHHHHHH
Confidence 222233468999999999999999999999999999999998641 0 1135566668999
Q ss_pred HHHHHcCChHHHHHHHHHHhhcCCChHHHHHH--HHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCC
Q 000134 1357 KLCRLAGHYETATRAILEAQASGAPNVHMEKA--KLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNP 1434 (2096)
Q Consensus 1357 klARKag~~~~A~~all~a~~~~~~~~~iE~A--KLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 1434 (2096)
|+|||+|..+.|.+-+.+...+ |+..+..| |+--+-..+-+--..+..+++ +.++
T Consensus 2744 kvArkh~l~~vcl~~L~~iytl--p~veiqdaF~K~req~~c~l~~~~e~~~gLe-----vi~s---------------- 2800 (3550)
T KOG0889|consen 2744 KVARKHGLPDVCLNQLAKIYTL--PNVEIQDAFQKLREQAKCYLQNKNELKTGLE-----VIES---------------- 2800 (3550)
T ss_pred HHHHhcCChHHHHHHHHHHhcc--CcchHHHHHHHHHHHHHHHhcChHHHHHHHH-----HHhc----------------
Confidence 9999999999999999887544 43333222 221100000000012222222 1110
Q ss_pred CCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccC
Q 000134 1435 LPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEI 1514 (2096)
Q Consensus 1435 ~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~ 1514 (2096)
.++..-.++.+|..+-+.|.+..+.|. .+++.+.|..|++++....|+|+.||+|+|+++...+. +
T Consensus 2801 -----TNl~yF~~~q~aeff~lkG~f~~kL~~--~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~----n--- 2866 (3550)
T KOG0889|consen 2801 -----TNLMYFSDRQKAEFFTLKGMFLEKLGK--FEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPV----N--- 2866 (3550)
T ss_pred -----ccHHHHhhHHHHHHHHhhhHHHHHhcC--cchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCc----c---
Confidence 112222345678889999999988887 78889999999999999999999999999999843211 0
Q ss_pred CcchhhhhchHHHHHHHHHHhhccCC-cchhhhHHHHHHhhhhcCccccccCCCChhhhHhHHHHHHHHHHhhcCCCCCc
Q 000134 1515 GPSEKRWWFYVPDVLLFYAKGLHRGH-KNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAY 1593 (2096)
Q Consensus 1515 g~~~~~~~~~l~~ai~~Y~~sl~~g~-~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iP~~ 1593 (2096)
..+..+|+.||++|+.+++ ...+..+.|+|||.--+ +..+.+.+++++++..||+|
T Consensus 2867 -------i~~a~~avsCyLqA~~~~~~skaRk~iakvLwLls~d----------------da~~~l~~~~~k~l~~ip~~ 2923 (3550)
T KOG0889|consen 2867 -------ISFACNAVSCYLQAARLYNSSKARKLIAKVLWLLSFD----------------DSLGTLGDVFDKFLGEIPVW 2923 (3550)
T ss_pred -------cHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHhc----------------cccchHHHHHHHhhccCCch
Confidence 2367799999999999875 46889999998877221 22335778899999999999
Q ss_pred hhhhhhHHhhhccccCchHHHHHHHHHHHHHHHhchhhHHHHHHHhhcC----------------CChhHHHHHHHHHHH
Q 000134 1594 QWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKS----------------TIPSRREAAAEIIQA 1657 (2096)
Q Consensus 1594 ~wl~~lPQLisRl~h~~~~v~~~l~~il~kv~~~yPqq~lw~l~~~~~S----------------~~~~R~~~~~~Il~~ 1657 (2096)
.|++|+|||+..+.|.+ ...+..|+.|+++.||||+++++...... .....-.|..+|...
T Consensus 2924 ~wl~~IPQLl~sLs~~e---~~~~~~iL~kia~~yPQal~f~lRta~~~~~i~qR~~~~~~~~~~~~~~p~~r~~~i~~~ 3000 (3550)
T KOG0889|consen 2924 NWLYFIPQLLTSLSKKE---AKLVRLILIKIAKSYPQALYFPLRTAREDLVIEQRQQVEVMGDKSDTTDPMGRPSKISQK 3000 (3550)
T ss_pred hhhhhhHHHHhhccccc---hhHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcHHHHHHH
Confidence 99999999999999988 67899999999999999999999765421 111111222233333
Q ss_pred HHhcCCCCC-----------------chhchHHH--------HH-------------------HHHHHHHHHhhccCCcc
Q 000134 1658 AKKGSAHGN-----------------SANNLFGQ--------FT-------------------SLIDHLIKLCFHAGQSK 1693 (2096)
Q Consensus 1658 ~~~~~~~~~-----------------~~~~li~~--------~~-------------------~l~~~Li~l~~~~~~~~ 1693 (2096)
.+...+..+ ...++..+ +. ++...+.. +......+
T Consensus 3001 ~r~~~p~~~s~~~~ld~~~~~w~~~~~l~~il~~~~~~la~~~~~~~~~i~~~~~~~~~e~~~r~v~al~~-~~~~~~~~ 3079 (3550)
T KOG0889|consen 3001 QRNLHPILSSLEKILDSVQLVWERLFDLEEILKTAYQLLAKTLETLFDKIQARFKSTPEEHALRLVNALLN-IDGIQNGN 3079 (3550)
T ss_pred hhccCcchhhHHhhhccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcccHHHHHHHHHHHH-Hhhhcccc
Confidence 332222000 00001111 01 11111111 10000000
Q ss_pred --------cccc---------------------chhHhhHHHHhhccCCcccc---------------------------
Q 000134 1694 --------SRTI---------------------NISTEFSALKRMMPLGIIMP--------------------------- 1717 (2096)
Q Consensus 1694 --------~~~~---------------------~l~~~f~~l~~~~~~~~i~P--------------------------- 1717 (2096)
.... .+..+|......+|+..-++
T Consensus 3080 r~~ivt~~~~~~~~~~~~l~~~~~~vl~~~~~~~~k~dFi~~~~~~~~~~~l~~~i~klk~w~~~le~k~~~~pk~~~LE 3159 (3550)
T KOG0889|consen 3080 RLGIVTKNTKSLSDTEMNLNRFASNVLPDPVRKKFKEDFITNKDGMKCICDLENYIDKLRKWRSRLESKVDRFPKKLNLE 3159 (3550)
T ss_pred ccccccccccCCcchHHHHHHHHHHhcchHHHHHHHHHHHhcccCCcccccHHHHHHHHHHHHHHHHHHHhcccccccHH
Confidence 0000 01111211111011111111
Q ss_pred ---------cccccccccCCCCCCCCCCCCCCCCCCCCcceEeeecCceEEe-cCCCcceEEEEEecCCCeeeEEe--cC
Q 000134 1718 ---------IQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEIL-SSLQRPKKIVLLGSDGIKRPFLC--KP 1785 (2096)
Q Consensus 1718 ---------~~~~l~~~LP~~~~~~~~~~~~~~f~~~~~v~I~~f~~~v~V~-~S~q~PkrI~i~gsDGk~y~fL~--K~ 1785 (2096)
.+++..+++|+++....+.. +..+.|.+|.|.|+++ +....-||+++||+||+.|+|.+ |+
T Consensus 3160 ~~s~~L~~F~hq~~evEiPGqyl~~k~~~-------~~~v~I~RF~P~veiv~~~~~~~rRl~iRG~dGk~~~~~~~~~~ 3232 (3550)
T KOG0889|consen 3160 EKSRFLSNFSHQFDEVEIPGQYLLDKSNN-------NYFVKIERFEPRVEIVRGHGMSYRRLYIRGSDGKIYPFAVQYPG 3232 (3550)
T ss_pred hhchHHhcccccCCcccCChHHhcccchh-------hhhhhHHHhccchhhhcccceeEEEEEEeccCCeecceeeeccc
Confidence 11134566777665432111 4678999999999988 45668999999999999997664 66
Q ss_pred CCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChH
Q 000134 1786 KDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQ 1865 (2096)
Q Consensus 1786 ~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~ 1865 (2096)
-.+-|+++|++|+++++|..|.+++|++||++.+.++.++|+++...|+|.+|+..|+.+|++++++..|...+.+....
T Consensus 3233 ~~~sRreErvlQL~r~lN~~l~~~~Et~rR~l~~~~p~~ipvs~q~rl~ed~ps~~tl~~I~~~~c~~~~~~~D~~i~~~ 3312 (3550)
T KOG0889|consen 3233 LRNSRREERVLQLFRMLNESLGKNKETRRRHLEFKLPIVIPVSSQMRLVEDKPSSITLQEIYEEYCARNNVSPDDPILLY 3312 (3550)
T ss_pred CCCccHHHHHHHHHHHHHHHhccChhhhhhhcCccCceeeeccCceEEecCCcchhhHHHHHHHHHHhcCCCcchhhHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999998885544333222
Q ss_pred HHHHHHHHhc--CCChH-----HHHHHhhcCCCch-HHHHHHHhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCC
Q 000134 1866 IKRIYDQFQG--KIPED-----EMLKTKILPMFPP-VFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHG 1937 (2096)
Q Consensus 1866 ~~~~~~~~~~--~~~~~-----~~~~~~i~~~~~p-vl~~wf~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~ 1937 (2096)
..++-..... ..+.. ++++.....+.|. ++++||.++|++|.++|.+|++|+.++|++++..|++.+|.|.|
T Consensus 3313 ~d~l~~~~~~~~~~~~~~~lr~~i~e~i~~~~vp~sil~dy~~~tf~~~~d~w~frk~f~~qla~~~~~~~~lni~~~~p 3392 (3550)
T KOG0889|consen 3313 FDRLAQAYSVLIGLTAAHQLRGQIFEDIQKTMVPRSILKDYFYKTFTNYSDFWTFRKQFTDQLAVFSFMEYMLNINGRGP 3392 (3550)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhCcHHHHHHHHHHhcCChhhhhhhHhHHHHHHHHHHHHHHHHhcCCCCc
Confidence 2222111111 11222 2233333345564 89999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCcEEeeeccccc-cccCCCCCCCCCCccccHHHHHhhcCCCccchHHHHHHHHHHHHHhChhhHHHHHHHH
Q 000134 1938 ENILFDSTTGDCVHVDFSCLF-DKGLLLEKPELVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETF 2016 (2096)
Q Consensus 1938 eNILld~~tG~vvHIDF~~~F-~kg~~l~~pE~VPFRLT~nmv~~mG~~G~eG~F~~~~~~t~~~LR~~~~~L~~iLe~f 2016 (2096)
+.+++.++||.+...||-+-. +..+.+...|.|||||||||+.++|-.|+||.+..++.++.++|-++.+.+-.++..|
T Consensus 3393 ~k~~~~~dsG~v~~~~~~~~~~~~~~~~~~~~~VpFRlTpni~~~i~~~~veg~l~~s~~a~ar~l~~p~~~l~~~l~~~ 3472 (3550)
T KOG0889|consen 3393 AKLTFAKDSGKVFNTDFLPSYISSKPIFHNNEPVPFRLTPNIQEFIGDFGVEGLLAGSMMAIARCLIEPDFELDPYLQLF 3472 (3550)
T ss_pred cceeeeeccccccchhhccCcccCccccccCCcCCeeecCCchhhhcchhhhhhhHHHHHHHHHHHhCCccchhHHHHHH
Confidence 999999999999999995544 6666778899999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcccccccCCCCccccchh----HHHHHHHHHHHhhccccccCCCCCCCCCHHHHHHHHHHHHhCcchhhhcCCcc
Q 000134 2017 IHDPLVEWTKSHKSSGVEVENPH----AQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGKMYIWW 2092 (2096)
Q Consensus 2017 l~Dpl~~W~~~~~~~~~~~~n~~----a~~~l~~i~~kL~g~~~~~~~~~~~~lsv~~qV~~LI~~Atd~~nL~~My~gW 2092 (2096)
++|++..|........ ..++. ....++.|-.|+..+... ...+......+..||.+|+|++|||||+|.|
T Consensus 3473 ~RDE~~~w~~~~~~~~--~~~~~~~~~v~~~v~~i~rrv~~~~~~----~~ge~~~~~t~~~lis~A~s~~nLaqmDp~w 3546 (3550)
T KOG0889|consen 3473 FRDEIISWFKQQTKGV--PADPLLEEMVNSNVDLIMRRVASLSSE----NSGELPDNQTVIDLISQATSPDNLAQMDPTW 3546 (3550)
T ss_pred HHHHHHHHhhccccCC--cCChhhhhhHHHHHHHHhhhhhhhccc----cccCCCCCccHHHHHHHhcChhhhhcCCccc
Confidence 9999999987533211 11221 234445555555433221 1112222226889999999999999999999
Q ss_pred cCCC
Q 000134 2093 MPWF 2096 (2096)
Q Consensus 2093 ~Pwl 2096 (2096)
+|||
T Consensus 3547 ~pWl 3550 (3550)
T KOG0889|consen 3547 HPWL 3550 (3550)
T ss_pred cccC
Confidence 9997
|
|
| >COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-71 Score=789.26 Aligned_cols=466 Identities=30% Similarity=0.527 Sum_probs=354.5
Q ss_pred CCCchhhhhhHHhhhccccCchHHHHHHHHHHHHHHHhchhhHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCC-C-c
Q 000134 1590 LPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHG-N-S 1667 (2096)
Q Consensus 1590 iP~~~wl~~lPQLisRl~h~~~~v~~~l~~il~kv~~~yPqq~lw~l~~~~~S~~~~R~~~~~~Il~~~~~~~~~~-~-~ 1667 (2096)
++...|+++++|+.+|+.+++.+ |+..+...+|.+..|...+...+....+.......+++... +... . .
T Consensus 1634 l~~~~~~~~l~q~~~r~~~~~~~-------i~~~~~~~~~l~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~ 1705 (2105)
T COG5032 1634 LLHLLFEPILAQLLSRLSSENNK-------ISVALLIDKPLHEERENFPSGLSLSSFQSSFLKELIKKSPR-KIRKKFKI 1705 (2105)
T ss_pred hhhhhHHHHHHHHHHHhcccchH-------HHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHhhhHH-HHHHHHHh
Confidence 56666999999999999999864 66677777899988888776655555566666666655410 0000 0 0
Q ss_pred hhchHHHHHHHH-HHHHHHhhccCCccccccchhHhhHHHHhhccCCcccccccccccccCCCCCCCCCCCCCCCCCCCC
Q 000134 1668 ANNLFGQFTSLI-DHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASD 1746 (2096)
Q Consensus 1668 ~~~li~~~~~l~-~~Li~l~~~~~~~~~~~~~l~~~f~~l~~~~~~~~i~P~~~~l~~~LP~~~~~~~~~~~~~~f~~~~ 1746 (2096)
..........+. +.+-+.+ . .........+. +..|.....|- ++...+|+.+... ++
T Consensus 1706 D~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~---~~~~~~~~~~~--~~e~~~P~~~~~~-----------k~ 1763 (2105)
T COG5032 1706 DISLLNLSRKLYISVLRSIR--K----RLKRLLELRLK---KVSPKLLLFHA--FLEIKLPGQYLLD-----------KP 1763 (2105)
T ss_pred hhhhhhhhHHHHHHHHHHHH--H----HhHHHHHHHhc---ccCHHHHhccc--cccccCCcccccC-----------CC
Confidence 000000111111 1111110 0 00000000111 01111111111 4556677654321 46
Q ss_pred cceEeeecCceEEecC-CCcceEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeeccee
Q 000134 1747 LPTISGIADEAEILSS-LQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVI 1825 (2096)
Q Consensus 1747 ~v~I~~f~~~v~V~~S-~q~PkrI~i~gsDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~Vi 1825 (2096)
.|+|.+|.|++.+++| .++||+++++|+||+.|+|+||++||+|||+|+||++++||++|+++++|+||++.|++|+|+
T Consensus 1764 ~v~I~~f~p~~~~~~~~~~~p~rl~~rgsdG~~y~~i~K~~dDlRQD~~~~Ql~~l~n~iL~~~~~~~~R~l~i~~Y~Vi 1843 (2105)
T COG5032 1764 FVLIERFEPEVSVVKSHLQRPRRLTIRGSDGKLYSFIVKGGDDLRQDELALQLIRLMNKILKKDKETRRRDLWIRPYKVI 1843 (2105)
T ss_pred CceEEEecCceeeeecccccceEEEEEecCCcEEEEEeecCccchHHHHHHHHHHHHHHHHHhChHhhhcCccceeeeeE
Confidence 7899999999999988 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhc-CCChHHHHHHhhcCCCchHHHHHHHhhCC
Q 000134 1826 PLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQG-KIPEDEMLKTKILPMFPPVFHKWFLTTFS 1904 (2096)
Q Consensus 1826 PLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~pvl~~wf~~~f~ 1904 (2096)
|++|+||+||||||+.|+++|+.+++++.+....... ++...+.. +....+.+.......+||+|++||.+.||
T Consensus 1844 pls~~~GiIe~vpn~~tl~sI~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~f~ 1918 (2105)
T COG5032 1844 PLSPGSGIIEWVPNSDTLHSILREYHKRKNISIDQEK-----KLAARLDNLKLLLKDEFFTKATLKSPPVLYDWFSESFP 1918 (2105)
T ss_pred eccCCcceEEEecCcchHHHHHHHHhhhcCCChhHHh-----hhhhhhhhhcccchhHHhhhhhcCCCchHHHHHHHhcC
Confidence 9999999999999999999999999987765432111 11111111 11112234456667788999999999999
Q ss_pred ChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeecc-ccccccCCCCCCCCCCccccHHHHHhhc
Q 000134 1905 EPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFS-CLFDKGLLLEKPELVPFRLTQNMIDGLG 1983 (2096)
Q Consensus 1905 ~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~-~~F~kg~~l~~pE~VPFRLT~nmv~~mG 1983 (2096)
+|.+|+.+|++|++|+|+|||+|||||+|||||+|||+|+.||+++||||| |+|++|..++.||.||||||+||+++||
T Consensus 1919 ~~~~w~~aR~Ny~~SlA~ySvigYiLglgDRH~~NIliD~~sG~viHiDFg~il~~~p~~~~~pE~vPFrLT~~iv~~mg 1998 (2105)
T COG5032 1919 NPEDWLTARTNFARSLAVYSVIGYILGLGDRHPGNILIDRSSGHVIHIDFGFILFNAPGRFPFPEKVPFRLTRNIVEAMG 1998 (2105)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHccCCCcCCceEEEEcCCCcEEEehHHHHHhcCCCCCCCcccCcHhhhHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999995 5666788899999999999999999999
Q ss_pred CCCccchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHhhccccccCCCCC
Q 000134 1984 ITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPS 2063 (2096)
Q Consensus 1984 ~~G~eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g~~~~~~~~~~ 2063 (2096)
+.|+||.||.+|+.++++||+|.+.||+++++|++||+++|...+... +..+..+.++.+++..|+.|.. ....
T Consensus 1999 ~~g~EG~Fr~~c~~~~~~LRk~~~~L~~~le~f~~d~l~~W~~~p~~~--~~~~~~~~~v~~rf~~kl~~~~----~~~~ 2072 (2105)
T COG5032 1999 VSGVEGSFRELCETAFRALRKNADSLMNVLELFVRDPLIEWRRLPCFR--EIQNNEIVNVLERFRLKLSEKD----AEKF 2072 (2105)
T ss_pred ccchhhHHHHHHHHHHHHHhccHHHHHHHHHHHhcCcchhhhcCcccc--chHHHHHHHHHHHHHHHhhhhh----hhhh
Confidence 999999999999999999999999999999999999999998543322 2223334455555666665543 3344
Q ss_pred CCCCHHHHHHHHHHHHhCcchhhhcCCcccCCC
Q 000134 2064 LPLAVEGQARRLIAEAVSHKNLGKMYIWWMPWF 2096 (2096)
Q Consensus 2064 ~~lsv~~qV~~LI~~Atd~~nL~~My~gW~Pwl 2096 (2096)
.+++|+++|+.||.+|||+.|||+||+||||||
T Consensus 2073 ~~l~I~~sv~~li~~a~d~~~L~~~yi~w~~f~ 2105 (2105)
T COG5032 2073 VDLLINKSVESLITQATDPFQLATMYIGWMPFW 2105 (2105)
T ss_pred cCCcHHHHHHHHHHHHcCHHHHHhhccccccCC
Confidence 689999999999999999999999999999997
|
|
| >cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-65 Score=605.11 Aligned_cols=273 Identities=40% Similarity=0.690 Sum_probs=244.2
Q ss_pred EeeecCceEEecCCCcceEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecC
Q 000134 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2096)
Q Consensus 1750 I~~f~~~v~V~~S~q~PkrI~i~gsDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~ 1829 (2096)
|.+|.|+|.|++|+|+||||+++|+||+.|.||+|++||+|+|+|+|||+++||++|.+++||++|+|.++||+|+||++
T Consensus 1 ~~~f~~~v~v~~s~~~Pkri~~~gsdG~~y~fl~K~~dDlR~D~rimQl~~~~n~il~~~~e~~~r~l~i~~y~vipls~ 80 (279)
T cd05171 1 VSKFKDVFTTAGGINAPKIITCVGSDGKKYKQLLKGGDDDRQDAVMEQVFQLVNTLLERNKETRKRKLRIRTYKVVPLSP 80 (279)
T ss_pred CCCccCeEEEecCCCCCEEEEEECCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHHhhChhhhhcCceeecceEEecCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHh--cCCC---hHHHHHHhhcCCCchHHHHHHHhhCC
Q 000134 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQ--GKIP---EDEMLKTKILPMFPPVFHKWFLTTFS 1904 (2096)
Q Consensus 1830 ~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~i~~~~~pvl~~wf~~~f~ 1904 (2096)
++||||||+|+.|+++|+++++...+.... ......+...... .... ..+.| +++++.++|++++||...|+
T Consensus 81 ~~GLIe~v~~~~tl~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~r~~~f-~~i~~~~~p~l~~~f~~~~~ 157 (279)
T cd05171 81 RAGILEWVDGTIPLGEYLVGATGAHERYRP--GDWTARKCRKAMAEVQKESNEERLKVF-LKICKNFRPVFRYFFLEKFL 157 (279)
T ss_pred CceEEEECCCChhHHHHHHHhhhcccccCc--cchhHHHHHHHHHHhhcCCHHHHHHHH-HHHHHhCcHHHHHHHHHHCc
Confidence 999999999999999999987643333221 1111111111111 1111 12233 56777889999999999999
Q ss_pred ChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCCCCCCCCccccHHHHHhhcC
Q 000134 1905 EPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGI 1984 (2096)
Q Consensus 1905 ~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~~pE~VPFRLT~nmv~~mG~ 1984 (2096)
+|.+||.+|++|++|+|+|||+|||||||||||+||||++.||+++|||||++|++|+.+++||.|||||||||+++||+
T Consensus 158 ~~~~~~~~r~~F~~S~A~~s~~~yilglgDRh~~NIll~~~tG~v~hiDf~~~f~~~~~l~~pe~vPFRLT~~~~~~lg~ 237 (279)
T cd05171 158 DPQDWFERRLAYTRSVATSSIVGYILGLGDRHANNILIDEKTAEVVHIDLGIAFEQGKILPVPETVPFRLTRDIVDGMGI 237 (279)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccEEEEcCcCcEEEEechhhhccCcCCCCCCcCChhhhHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccc
Q 000134 1985 TGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWT 2025 (2096)
Q Consensus 1985 ~G~eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~ 2025 (2096)
.|++|.|+.+|++++++||++++.|+++|++|+|||+++|.
T Consensus 238 ~g~~g~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~dpl~~W~ 278 (279)
T cd05171 238 TGVEGVFRRCCEKTLEVLRDNKDAILTILEVLLYDPLYSWT 278 (279)
T ss_pred CCCcchHHHHHHHHHHHHHcChHHHHHHHHHHHhCcccccc
Confidence 99999999999999999999999999999999999999996
|
ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi |
| >cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-64 Score=606.24 Aligned_cols=277 Identities=33% Similarity=0.626 Sum_probs=241.8
Q ss_pred EeeecCceEEecCCCcceEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecC
Q 000134 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2096)
Q Consensus 1750 I~~f~~~v~V~~S~q~PkrI~i~gsDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~ 1829 (2096)
|.+|+++|.|++|+++||+|+++|+||+.|+||+|++||+|+|+|+||||++||.+|++++++++|+|.|+||.||||++
T Consensus 1 I~~f~~~v~V~~Sk~~Pkri~~~gsDG~~y~fLlK~~dDLR~D~RimQlf~l~N~ll~~~~~~~~r~L~i~tY~ViPLs~ 80 (307)
T cd05170 1 IESVGSTVTILPTKTKPKKLAFLGSDGKKYTYLFKGREDLHLDERIMQFLSIVNTMFASIKDQESPRFRARHYSVTPLGP 80 (307)
T ss_pred CccccCeEEEEecCCCceEEEEECCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHHHhChhhhccCceeecceEEEcCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEecCCCccHHHHHHHHHHhcCCCcc------c-----------cCChHHHHHHHHHhc-CC------C--hH---
Q 000134 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDR------Q-----------KTNPQIKRIYDQFQG-KI------P--ED--- 1880 (2096)
Q Consensus 1830 ~~GLIEwv~n~~tl~~il~~~~~~~g~~~~------~-----------~~~~~~~~~~~~~~~-~~------~--~~--- 1880 (2096)
++||||||+|+.||.+|+.+++.+.+.... . +......++...... .. . ..
T Consensus 81 ~~GLIEwv~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 160 (307)
T cd05170 81 RSGLIQWVDGATPLFGLYKRWQQREAVLQAQKSQVGYQNPQIPGIVPRPSDLFYNKITPALKAHGLSLDVSRRDWPLSVL 160 (307)
T ss_pred CcceEEEcCCChhHHHHHHHHHHhhhhhhhhhhccccccccccccccchhHHHHHHHHHHHHhhccccccchhhccHHHH
Confidence 999999999999999999987765432100 0 000011122111110 00 0 00
Q ss_pred HHHHHhhcCCCch-HHHHHHHhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeecccccc
Q 000134 1881 EMLKTKILPMFPP-VFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD 1959 (2096)
Q Consensus 1881 ~~~~~~i~~~~~p-vl~~wf~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~ 1959 (2096)
.....++++..|+ .+.++++..+++|.+||.+|++||+|+|+|||+|||||||||||+||||++.||+++|||||++|+
T Consensus 161 ~~~~~~i~~~~~~~~l~~~~~~~~~~~~~w~~~r~~f~~s~A~~s~~~yilglgDRh~~NIli~~~tG~v~hiDf~~~f~ 240 (307)
T cd05170 161 RQVLDELMQETPKDLLARELWCSSTTSSEWWSVTQRYARSTAVMSMIGYVIGLGDRHLDNVLIDLKTGEVVHIDYNVCFE 240 (307)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCccEEEEcCCCcEEEEeeHhhhc
Confidence 1122455666776 688899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCccccHHHHHhhcCCCccchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCccccc
Q 000134 1960 KGLLLEKPELVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTK 2026 (2096)
Q Consensus 1960 kg~~l~~pE~VPFRLT~nmv~~mG~~G~eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~ 2026 (2096)
+|+.+++||.|||||||||+++||+.|+||.|+.+|+.++++||++++.|+++|++|+|||+++|+.
T Consensus 241 ~~~~l~~pE~VPFRLT~~~~~~lg~~g~~G~f~~~~~~~~~~Lr~~~~~l~~~l~~fv~DPl~~W~~ 307 (307)
T cd05170 241 KGKSLRIPEKVPFRMTQNIETALGLTGVEGVFRLSCEQVLHIMRRGRETLLTLLEAFVYDPLVDWTA 307 (307)
T ss_pred ccCCCCCCCCCCeeeCHHHHHHhCCCCCchhHHHHHHHHHHHHHcCHHHHHHHHHHHhhCccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999963
|
SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno |
| >cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-64 Score=600.64 Aligned_cols=271 Identities=36% Similarity=0.644 Sum_probs=241.5
Q ss_pred EeeecCceEEecCCCcceEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecC
Q 000134 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2096)
Q Consensus 1750 I~~f~~~v~V~~S~q~PkrI~i~gsDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~ 1829 (2096)
|.+|+|+|.|++|+++||+|+++|+||+.|+|++|++||+|||+|+||+++++|.+|++++|||+|+|.++||+|||+++
T Consensus 1 I~~f~~~v~v~~s~~~pk~i~~~gsdG~~y~fl~K~~dDlR~D~r~~ql~~~~n~il~~~~~~~~~~l~~~ty~Vipls~ 80 (280)
T cd05169 1 ISSFDPVLKVIPSKQRPRRLTIVGSDGKEYKFLLKGHEDLRLDERVMQLFGLINTLLKNDSETSKRNLSIQTYSVIPLSP 80 (280)
T ss_pred CccccCeEEEEeCCCCCeEEEEECCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHHhChhhhhcCcceeeccEEecCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHH---HHhcCC---ChHHHHHHhhcCCCc-hHHHHHHHhh
Q 000134 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYD---QFQGKI---PEDEMLKTKILPMFP-PVFHKWFLTT 1902 (2096)
Q Consensus 1830 ~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~i~~~~~-pvl~~wf~~~ 1902 (2096)
++||||||+|+.|+.+|+++++...+.... .....+.. ...... .+.+.|++ +++..| ++|++||+..
T Consensus 81 ~~GlIE~v~~~~sl~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~k~~~~~~-i~~~~~~~~l~~~~~~~ 155 (280)
T cd05169 81 NVGLIGWVPGCDTLHSLIREYRKKRNIPLN----LEHRLMELKSAPDYDNLTLIQKLEVFEY-ALNNTPGDDLRKILWLK 155 (280)
T ss_pred CcceEEeCCCCchHHHHHHHHHHHcCCChh----HHHHHHHHHhhhhhhhCCHHHHHHHHHH-HHHhCCHHHHHHHHHHh
Confidence 999999999999999999998776553221 11111100 000111 12344444 444444 5999999999
Q ss_pred CCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCC-CCCCCCCccccHHHHHh
Q 000134 1903 FSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL-EKPELVPFRLTQNMIDG 1981 (2096)
Q Consensus 1903 f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l-~~pE~VPFRLT~nmv~~ 1981 (2096)
|++|.+|+.+|++|++|+|+|||+|||||||||||+|||||+.||+++|||||++|++|+.+ ++||.|||||||||+++
T Consensus 156 ~~~~~~w~~~r~~F~~S~A~~Sv~~YilglgDRH~~NIll~~~tG~v~HIDfg~~f~~~~~~~~~pE~VPFRLT~~~~~~ 235 (280)
T cd05169 156 SPSSEAWLERRTNFTRSLAVMSMVGYILGLGDRHPSNIMIDRLTGKVIHIDFGDCFEVAMHREKFPEKVPFRLTRMLVNA 235 (280)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhheeccCCCcceEEEEcCCCCEEEEecHHHHhhccccCCCCCcCCcccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999874 78999999999999999
Q ss_pred hcCCCccchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccc
Q 000134 1982 LGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWT 2025 (2096)
Q Consensus 1982 mG~~G~eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~ 2025 (2096)
||+.|++|.|+.+|+.++++||+|++.|+++|++|+|||+++|.
T Consensus 236 lG~~g~~G~F~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~W~ 279 (280)
T cd05169 236 LGVSGIEGTFRTTCEDVMNVLRENKESLMAVLEAFVHDPLLSWR 279 (280)
T ss_pred hCCCCCCCchHHHHHHHHHHHhcChHHHHHHHHHHHhCcccccc
Confidence 99999999999999999999999999999999999999999996
|
TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with |
| >cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-64 Score=585.01 Aligned_cols=247 Identities=27% Similarity=0.436 Sum_probs=229.3
Q ss_pred EeeecCceEEe-cCCCcceEEEEEecCCCeeeEEec--CCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceee
Q 000134 1750 ISGIADEAEIL-SSLQRPKKIVLLGSDGIKRPFLCK--PKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIP 1826 (2096)
Q Consensus 1750 I~~f~~~v~V~-~S~q~PkrI~i~gsDGk~y~fL~K--~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViP 1826 (2096)
|++|.|+++|+ +|+++||||+++|+||+.|+|||| +++|+|+|+|+|||++++|.+|.+++||++|+|.+++|.|||
T Consensus 1 i~rf~p~~~iv~~~~~~pkri~i~gsdG~~y~fLvk~~~~~d~R~d~Ri~Ql~~liN~~l~~~~et~~r~l~i~~y~viP 80 (253)
T cd05163 1 IERFLPTVEIVRGHGYCYRRLTIRGHDGSIYPFLVQYPAARQARREERVLQLFRTLNSVLSKNKETRRRNLQFTLPLVVP 80 (253)
T ss_pred CcccCCeEEEEccCCCcCcEEEEECCCCCEEEEEEecCCchhHHHHHHHHHHHHHHHHHHhcCHHHHhCcccccceeEEE
Confidence 57899999976 788999999999999999999998 578999999999999999999999999999999999999999
Q ss_pred ecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhc-CCCch-HHHHHHHhhCC
Q 000134 1827 LTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKIL-PMFPP-VFHKWFLTTFS 1904 (2096)
Q Consensus 1827 Ls~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~p-vl~~wf~~~f~ 1904 (2096)
|++++|||||++++.|+++++.. ..+.+. +++ ...|+ +|++||+++|+
T Consensus 81 Ls~~~gLie~~~~~~tl~~i~~~-----------------------------~~~~~~-~i~~~~~p~~~l~~~~~~~~~ 130 (253)
T cd05163 81 LSPQIRLVEDDPSYISLQEIYED-----------------------------KLEIYN-EIQKDMVPDTILKNYILSTFP 130 (253)
T ss_pred cCCccceEEECCCCccHHHHHHH-----------------------------HHHHHH-HHHHhcCCHHHHHHHHHHHCC
Confidence 99999999999999999999753 011122 222 22454 99999999999
Q ss_pred ChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCC-CCCCCCCccccHHHHHhhc
Q 000134 1905 EPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL-EKPELVPFRLTQNMIDGLG 1983 (2096)
Q Consensus 1905 ~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l-~~pE~VPFRLT~nmv~~mG 1983 (2096)
+|++||.+|++||+|+|+|||+|||+|||||||+|||++..||+|+|||||++|++|..+ ++||.|||||||||+++||
T Consensus 131 ~~~~~~~~r~~ft~s~A~~s~~gYilglgdRh~~nili~~~tG~v~hiDf~~~f~~~~~~~~~pE~VPFRLT~ni~~~~g 210 (253)
T cd05163 131 TYQDYWLFRKQFTYQLALLSFMTYILSINNRNPDKIFISRDTGNVYQSDLLPSINNNKPLFHNNEPVPFRLTPNIQHLIG 210 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhEEEEcCCCcEEEEeeeeeecCCCcCCCCCCcCCcccCHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999876 8999999999999999999
Q ss_pred CCCccchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCccccc
Q 000134 1984 ITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTK 2026 (2096)
Q Consensus 1984 ~~G~eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~ 2026 (2096)
++|+||.|+.+|++++++||++++.|+++|++|+|||+++|.+
T Consensus 211 ~~g~eG~f~~~~~~~~~~Lr~~~~~l~~~L~~fi~Dpl~~W~~ 253 (253)
T cd05163 211 PIGLEGILTSSMMAIARCLTEPEFDLENALQLFIRDELIAWHK 253 (253)
T ss_pred CcCcCCcHHHHHHHHHHHHhcCHHHHHHHHHHHHcChhhhhcC
Confidence 9999999999999999999999999999999999999999963
|
TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat |
| >cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-63 Score=573.21 Aligned_cols=234 Identities=34% Similarity=0.627 Sum_probs=227.3
Q ss_pred EeeecCceEEecCCCcceEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecC
Q 000134 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2096)
Q Consensus 1750 I~~f~~~v~V~~S~q~PkrI~i~gsDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~ 1829 (2096)
|.+|.+++.|++|+++||+|+++|+||+.|+||+|++||+|||+|+||+++++|.+|++++++++|++.++||.|+|+++
T Consensus 1 i~~~~~~v~v~~S~~~Pkri~~~~~dG~~~~fl~K~~dDlR~D~r~~Ql~~l~n~~l~~~~~~~~~~l~~~~y~vipls~ 80 (235)
T cd05172 1 IVGFDERVLVLSSLRKPKRITIRGSDEKEYPFLVKGGEDLRQDQRIQQLFGVMNNILAQDTACRQRALQLRTYQVIPMTP 80 (235)
T ss_pred CCCcCCceEEeccCCCCEEEEEECCCCCEEEEEEECCCcccHHHHHHHHHHHHHHHHHhChhhccCCceeecceEEEeCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHH
Q 000134 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAW 1909 (2096)
Q Consensus 1830 ~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w 1909 (2096)
++||||||+++.|+++|+++ +++++||.+.+++|.+|
T Consensus 81 ~~GlIE~v~~~~sl~~i~~~-------------------------------------------~~l~~~~~~~~~~~~~~ 117 (235)
T cd05172 81 RFGLIEWLENTTPLKEILKN-------------------------------------------DLLRRALVEMSASPEAF 117 (235)
T ss_pred CCceEEEcCCchhHHHHHhh-------------------------------------------HHHHHHHHHHCCCHHHH
Confidence 99999999999999999753 46788999999999999
Q ss_pred HHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCC-CCCCCCCCccccHHHHHhhcCCCcc
Q 000134 1910 FRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL-LEKPELVPFRLTQNMIDGLGITGYE 1988 (2096)
Q Consensus 1910 ~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~-l~~pE~VPFRLT~nmv~~mG~~G~e 1988 (2096)
|.+|++|++|+|++|++|||||||||||+||||++.||+++|||||++|++++. +++||.|||||||||+++||+.|+|
T Consensus 118 ~~~r~~F~~S~A~~S~~~YilglgDRH~~NIli~~~tG~v~HIDfg~~f~~~~~~~~~pE~vPFRLT~~~~~~~g~~g~~ 197 (235)
T cd05172 118 LSLRDHFAKSLAAMCVSHWILGIGDRHLSNFLVDLETGGLVGIDFGHAFGTATQFLPIPELMPFRLTPQFVNLMEPMKAD 197 (235)
T ss_pred HHHHHHHHHHHHHHHHHhheeeccCCCcccEEEECCCCcEEEEeeHhhhccCCccCCCCCCCCeeeCHHHHHHhCCCCCC
Confidence 999999999999999999999999999999999999999999999999999987 8899999999999999999999999
Q ss_pred chHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCccccc
Q 000134 1989 GTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTK 2026 (2096)
Q Consensus 1989 G~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~ 2026 (2096)
|.|+.+|+.++++||++++.|+++|++|+|||+++|.+
T Consensus 198 G~f~~~~~~~~~~Lr~~~~~l~~~l~~f~~dpl~~w~~ 235 (235)
T cd05172 198 GLLRSCMVHTLRALRNERHLLLSTMDVFVKEPSLDWKN 235 (235)
T ss_pred ChHHHHHHHHHHHHHcCHHHHHHHHHHHhhCchhhhcC
Confidence 99999999999999999999999999999999999963
|
DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st |
| >cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-61 Score=563.30 Aligned_cols=237 Identities=72% Similarity=1.248 Sum_probs=230.5
Q ss_pred EeeecCceEEecCCCcceEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecC
Q 000134 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2096)
Q Consensus 1750 I~~f~~~v~V~~S~q~PkrI~i~gsDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~ 1829 (2096)
|.+|++++.|++|+++||+|+++|+||+.|.||+|++||||||+|+||+++++|.+|.++++|++|++.++||.|+|+++
T Consensus 1 i~~~~~~~~v~~s~~~P~~i~~~~~dG~~~~~l~K~~dDLRqD~ri~ql~~l~n~il~~~~~~~~~~l~~~~y~Vipl~~ 80 (237)
T cd00892 1 ISGFEDEVEILNSLQKPKKITLIGSDGNSYPFLCKPKDDLRKDARLMEFNTLINRLLSKDPESRRRRLYIRTYAVIPLNE 80 (237)
T ss_pred CccccCeEEEEeccCCceEEEEEcCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCchhccCceeeEeceEEEcCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHH
Q 000134 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAW 1909 (2096)
Q Consensus 1830 ~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w 1909 (2096)
++||||||+|+.|+.+++++++ ||+|++||.++|++|.+|
T Consensus 81 ~~GlIE~v~~~~sl~~i~~~~~----------------------------------------~~~l~~~~~~~~~~~~~~ 120 (237)
T cd00892 81 ECGIIEWVPNTATLRSILLEIY----------------------------------------PPVFHEWFLENFPDPSAW 120 (237)
T ss_pred CCceEEECCCCccHHHHHHHhC----------------------------------------CHHHHHHHHHHCcCHHHH
Confidence 9999999999999999986532 578999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCCCCCCCCccccHHHHHhhcCCCccc
Q 000134 1910 FRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEG 1989 (2096)
Q Consensus 1910 ~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~~pE~VPFRLT~nmv~~mG~~G~eG 1989 (2096)
+.+|++|+.|+|++|++|||||+|||||+||||++.||+++|||||++|++|+.+++||.|||||||||+++||+.|++|
T Consensus 121 ~~~~~~F~~SlA~~s~~~YilgigDRh~~NIli~~~tG~~~HIDfg~~~~~~~~~~~pe~vPFRLT~~~~~~lg~~g~~g 200 (237)
T cd00892 121 LKARNAYTRSTAVMSMVGYILGLGDRHGENILFDSNTGDVVHVDFNCLFDKGETLEVPERVPFRLTQNMVDAMGVLGVEG 200 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCcccEEEEcCCCcEEEEehHhhhcccccCCCCCCCCcccCHHHHHHhCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCccccc
Q 000134 1990 TFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTK 2026 (2096)
Q Consensus 1990 ~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~ 2026 (2096)
.|+.+|+.++++||+|++.|+++|++|+|||+++|.+
T Consensus 201 ~F~~~~~~~~~~Lr~~~~~l~~~l~~fi~dpl~~w~~ 237 (237)
T cd00892 201 LFRKSCEVTLRLLRSNKETLMSVLETFIHDPLVEWSK 237 (237)
T ss_pred chHHHHHHHHHHHHhCHHHHHHHHHHHhhccchhccC
Confidence 9999999999999999999999999999999999974
|
ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central |
| >cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-58 Score=528.41 Aligned_cols=222 Identities=55% Similarity=0.955 Sum_probs=217.1
Q ss_pred EeeecCceEEecCCCcceEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecC
Q 000134 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2096)
Q Consensus 1750 I~~f~~~v~V~~S~q~PkrI~i~gsDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~ 1829 (2096)
|.+|++++.|++|+++||+|+++|+||+.|.||+|++||+|+|+|+||+++++|.+|+++.||++|++.++||.|+|+++
T Consensus 1 i~~~~~~v~v~~S~~~P~~i~~~~~dG~~~~fl~K~~dDlR~D~rv~ql~~~~n~il~~~~~~~~~~l~~~~y~vipls~ 80 (222)
T cd05164 1 IASFDDAVRILGSKQKPKKITLTGSDGKKYLFLVKGGEDLRQDQRIMQLFQFCNTLLAKDAECRRRKLTIRTYAVIPLNS 80 (222)
T ss_pred CccccCeeEEecccCCCEEEEEECCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCchhccCceEeecceEEEcCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHH
Q 000134 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAW 1909 (2096)
Q Consensus 1830 ~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w 1909 (2096)
++||||||+|+.|+. ++|++||...|++|++|
T Consensus 81 ~~GliE~v~~~~sl~------------------------------------------------~~l~~~~~~~~~~~~~~ 112 (222)
T cd05164 81 RSGLIEWVEGTTTLK------------------------------------------------PVLKKWFWLQFPDPEQW 112 (222)
T ss_pred CCceEEEcCCcchHH------------------------------------------------HHHHHHHHHHCcCHHHH
Confidence 999999999999986 45678999999999999
Q ss_pred HHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCCCCCCCCccccHHHHHhhcCCCccc
Q 000134 1910 FRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEG 1989 (2096)
Q Consensus 1910 ~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~~pE~VPFRLT~nmv~~mG~~G~eG 1989 (2096)
|.+|++|+.|+|++|++|||+|+|||||+||||++.||+++|||||++|++|+.+++||.|||||||||+++||+.|++|
T Consensus 113 ~~~r~~F~~SlA~~s~~~YvlglgDRh~~NIli~~~tG~v~hIDf~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~g~~G 192 (222)
T cd05164 113 FAARKNYTRSTAVMSIVGYILGLGDRHLDNILIDRETGEVVHIDFGCIFEKGKTLPVPELVPFRLTRNIINGMGITGVEG 192 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCceEEEECCCCcEEEEccHHhhccCCCCCCCCCCCEEeCHHHHHHhCCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhChhhHHHHHHHHhcC
Q 000134 1990 TFLRVCEITLSVLRTHRETLMSVLETFIHD 2019 (2096)
Q Consensus 1990 ~F~~~~~~t~~~LR~~~~~L~~iLe~fl~D 2019 (2096)
.|+.+|+.++++||+|++.|+++|++|+||
T Consensus 193 ~f~~~~~~~~~~Lr~~~~~l~s~l~~fv~d 222 (222)
T cd05164 193 LFRKICEQTLEVFRKHRDTLIAFLEVFVYD 222 (222)
T ss_pred hHHHHHHHHHHHHHhCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999997
|
Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d |
| >cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-53 Score=490.14 Aligned_cols=219 Identities=35% Similarity=0.636 Sum_probs=212.3
Q ss_pred EeeecCceEEecCCCcceEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecC
Q 000134 1750 ISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTE 1829 (2096)
Q Consensus 1750 I~~f~~~v~V~~S~q~PkrI~i~gsDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~ 1829 (2096)
+.+|.+.+.|++|+++||+|+++|+||+.|+|++|++||+|||+|+||+++++|.+|++++ ++++.+++|.|+|+++
T Consensus 1 ~~~~~~~~~v~~s~~~P~~l~~~~~dg~~~~~l~K~~ddlR~D~~~~ql~~~~n~il~~~~---~~~l~~~~y~vipls~ 77 (219)
T cd00142 1 IAIDVKICRIMPSKTRPKKLTLIGADGKEYRILFKNGDDLRQDERVLQFIRLMNKILKKEL---GLDLFLTTYSVIPLSP 77 (219)
T ss_pred CCccCCceEEEcccCCCEEEEEEccCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHhCC---CCCceEEeEEEEEecC
Confidence 3578899999999999999999999999999999999999999999999999999999886 7899999999999999
Q ss_pred CcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHH
Q 000134 1830 DCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAW 1909 (2096)
Q Consensus 1830 ~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w 1909 (2096)
++||||||+|+.|+. ++|++||...+++|++|
T Consensus 78 ~~GlIE~v~~~~sl~------------------------------------------------~~l~~~~~~~~~~~~~~ 109 (219)
T cd00142 78 RSGLIEVVPGSVTLE------------------------------------------------DDLSKWLKRKSPDEDEW 109 (219)
T ss_pred CceEEEEeCCCchhH------------------------------------------------HHHHHHHHHHCcCHHHH
Confidence 999999999999986 56788999999999999
Q ss_pred HHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCCCCCCCCccccHHHHHhhcCCCccc
Q 000134 1910 FRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEG 1989 (2096)
Q Consensus 1910 ~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~~pE~VPFRLT~nmv~~mG~~G~eG 1989 (2096)
+.+|++|+.|+|++|++|||+|+|||||+||||++.||+++|||||++|++++.+..||.|||||||||+++||+.|++|
T Consensus 110 ~~~~~~F~~SlA~~s~~~YilglgDRh~~NIli~~~~G~~~hIDfg~~~~~~~~~~~~e~vPFRLT~~~~~~~g~~~~~g 189 (219)
T cd00142 110 QEARENFISSLAGYSVAGYILGIGDRHPDNIMIDLDTGKLFHIDFGFIFGKRKKFLGRERVPFRLTPDLVNALGTGGVFG 189 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCccEEEECCCCeEEEEeeHHhhCcCcCCCCCCCCCEeccHHHHHHhCCcchhh
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhChhhHHHHHHHHhcC
Q 000134 1990 TFLRVCEITLSVLRTHRETLMSVLETFIHD 2019 (2096)
Q Consensus 1990 ~F~~~~~~t~~~LR~~~~~L~~iLe~fl~D 2019 (2096)
.|+.+|+.++++||+|++.|+++|++|++|
T Consensus 190 ~F~~~~~~~~~~lr~~~~~i~~ll~~~~~~ 219 (219)
T cd00142 190 PFRSLCVKAMLILRRHAGLLLNLLSLMLRD 219 (219)
T ss_pred hHHHHHHHHHHHHHhChHHHHHHHHHhccC
Confidence 999999999999999999999999999987
|
Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the |
| >cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-52 Score=502.38 Aligned_cols=279 Identities=22% Similarity=0.366 Sum_probs=244.0
Q ss_pred CCcceEeeec-CceEEecCCCcceEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeee
Q 000134 1745 SDLPTISGIA-DEAEILSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRT 1821 (2096)
Q Consensus 1745 ~~~v~I~~f~-~~v~V~~S~q~PkrI~i~gsD--Gk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~t 1821 (2096)
.+.+.|.+|. +++.|++|+++|++|++.|+| |+.|.|++|++||||||+++||++++||.+|+++. .+|+++|
T Consensus 54 ~p~~~i~~i~~~~~~v~~S~~~P~~l~f~~~d~~g~~~~~i~K~gDDLRqD~l~~Ql~~l~~~i~~~~~----ldl~l~~ 129 (352)
T cd00891 54 DPRLEIKGLIIEKCKVMDSKKKPLWLVFKNADPSGEPIKVIFKVGDDLRQDMLTLQMIRLMDKIWKKEG----LDLRMTP 129 (352)
T ss_pred CCceEEEEEeccceEEeccccCCcEEEEEecCCCCCEEEEEeccCCchhHHHHHHHHHHHHHHHHHHCC----CCeeeEE
Confidence 4678999996 679999999999999999999 99999999999999999999999999999998874 6899999
Q ss_pred cceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHh
Q 000134 1822 FAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLT 1901 (2096)
Q Consensus 1822 Y~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~ 1901 (2096)
|.|+|+++++|+||||+|+.|+++|..++....| .|+ .+.+++||.+
T Consensus 130 Y~Vip~~~~~GlIE~V~ns~tl~~I~~~~~~~~~--------------------------~~~-------~~~l~~~~~~ 176 (352)
T cd00891 130 YGCIATGDGVGMIEVVPNSETIAKIQKKAGGVGG--------------------------AFK-------DNPLMNWLKK 176 (352)
T ss_pred EEEEEccCCceEEEEeCCCccHHHHHHhcCcccc--------------------------ccc-------cchHHHHHHH
Confidence 9999999999999999999999999765211100 011 1357899999
Q ss_pred hCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCC-CC-CCCCCCccccHHHH
Q 000134 1902 TFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL-LE-KPELVPFRLTQNMI 1979 (2096)
Q Consensus 1902 ~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~-l~-~pE~VPFRLT~nmv 1979 (2096)
.+++|.+|..+|.+|++|+|+|||+||||||||||++||||+ .+|+++|||||++|+.++. +. .||.||||||++|+
T Consensus 177 ~~~~~~~~~~a~~nF~~S~A~ysv~~YiLgigDRH~~NILi~-~~G~~~HIDFG~ilg~~~~~~~~~~E~~PFrLT~~mv 255 (352)
T cd00891 177 KNKGEEDYEKAVENFTYSCAGYCVATYVLGIGDRHNDNIMLT-KTGHLFHIDFGHFLGNFKKKFGIKRERAPFVLTPDMA 255 (352)
T ss_pred hCCCHHHHHHHHHHHhhhHHHHHHHHHHccccccCCCceEEC-CCCCEEEEehHHhhccCCccCCCCCCCCCeeecHHHH
Confidence 999999999999999999999999999999999999999999 5999999999999987653 44 59999999999999
Q ss_pred HhhcCCCcc--chHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHhhccccc
Q 000134 1980 DGLGITGYE--GTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVG 2057 (2096)
Q Consensus 1980 ~~mG~~G~e--G~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g~~~~ 2057 (2096)
++||+.|.+ |.|+..|+.++.+||+|.+.|++++++|+++++.+|.. .+.+..+++|+..-..
T Consensus 256 ~~mGg~~s~~~~~F~~~c~~~~~~LR~~~~~il~l~~lm~~~~lp~~~~--------------~~~i~~l~~r~~l~~s- 320 (352)
T cd00891 256 YVMGGGDSEKFQRFEDLCCKAYNILRKHGNLFINLFSLMLSAGIPELQS--------------IEDIEYLRDALALDKS- 320 (352)
T ss_pred HHhCCCCCcccchHHHHHHHHHHHHhcCHHHHHHHHHhhccCCCCccCc--------------HHHHHHHHHHhCCCCC-
Confidence 999999966 99999999999999999999999999999999988752 2457788888874321
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhCcc
Q 000134 2058 VGAAPSLPLAVEGQARRLIAEAVSHK 2083 (2096)
Q Consensus 2058 ~~~~~~~~lsv~~qV~~LI~~Atd~~ 2083 (2096)
.-....++..+|++|.+..
T Consensus 321 -------~~~a~~~~~~lI~~s~~~~ 339 (352)
T cd00891 321 -------DEEATEYFRKLIHESLNSK 339 (352)
T ss_pred -------HHHHHHHHHHHHHHHHhcc
Confidence 1235567889999998764
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c |
| >cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-52 Score=500.85 Aligned_cols=284 Identities=21% Similarity=0.392 Sum_probs=250.5
Q ss_pred CCCCCcceEeeec-CceEEecCCCcceEEEEEecCC---CeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCe
Q 000134 1742 FSASDLPTISGIA-DEAEILSSLQRPKKIVLLGSDG---IKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKL 1817 (2096)
Q Consensus 1742 f~~~~~v~I~~f~-~~v~V~~S~q~PkrI~i~gsDG---k~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L 1817 (2096)
+|..+.+.|.++. +++.|++|+++|++|++.|+|| +.|.|++|++||||||+|+||++++||.+|+++. ++|
T Consensus 55 lP~dp~~~i~~i~~~~~~v~~S~~~P~~l~f~~~dg~~~~~~~~i~K~gDDLRqD~l~~Ql~~lm~~il~~~~----ldl 130 (350)
T cd00896 55 LPLDPSIEITGIIPEESSVFKSALMPLKLTFKTEKGNEEGEYPVIFKVGDDLRQDQLVIQIISLMDRLLKKEN----LDL 130 (350)
T ss_pred CCCCCCeEEEEEecCceEEeccccCceEEEEEeCCCCCCceEEEEecCCcchhHhHHHHHHHHHHHHHHHhCC----CCc
Confidence 3445678899986 6899999999999999999999 9999999999999999999999999999999874 799
Q ss_pred eeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHH
Q 000134 1818 YIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHK 1897 (2096)
Q Consensus 1818 ~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~ 1897 (2096)
+++||.|+|+++++|+||||+ +.|+++|..++.. +.+
T Consensus 131 ~l~~Y~Vip~~~~~GlIE~V~-s~tl~~i~~~~~~------------------------------------------l~~ 167 (350)
T cd00896 131 KLTPYKVLATSPTDGLVEFIP-SVTLASILKKYGG------------------------------------------ILN 167 (350)
T ss_pred eeEEEEEEEcCCCCcceEEEe-cccHHHHHHHHHH------------------------------------------HHH
Confidence 999999999999999999999 9999999765210 457
Q ss_pred HHHhhCCChhHH----HHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCCCCCCCCcc
Q 000134 1898 WFLTTFSEPAAW----FRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFR 1973 (2096)
Q Consensus 1898 wf~~~f~~p~~w----~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~~pE~VPFR 1973 (2096)
||...++++..| ..+|.+|++|+|+|||+||||||||||++||||+ .+|+++|||||++|++++ .|+.||||
T Consensus 168 ~l~~~~~~~~~~~~~~~~a~~nF~~S~A~ysvv~YiLGigDRH~~NILi~-~~G~~~HIDFG~ilg~~p---~~~~~PFr 243 (350)
T cd00896 168 YLRKLNPDDGGPLGISPEVMDTFVKSCAGYCVITYILGVGDRHLDNLLLT-KDGKLFHIDFGYILGRDP---KPFPPPMK 243 (350)
T ss_pred HHHHHCCCccccccchHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEc-CCCCEEEEEhHHhhCCCC---CCCCCCee
Confidence 888888888774 7999999999999999999999999999999999 599999999999999984 58889999
Q ss_pred ccHHHHHhhcCCCccc--hHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHh
Q 000134 1974 LTQNMIDGLGITGYEG--TFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARL 2051 (2096)
Q Consensus 1974 LT~nmv~~mG~~G~eG--~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL 2051 (2096)
||++|+++||+.|.+| .|+..|+.++.+||+|.+.|++++++|+++++.+|... ..+++..+++|+
T Consensus 244 LT~~mv~~mGg~~s~~~~~F~~~c~~~~~~lR~~~~~il~l~~lm~~~~ip~~~~~------------~~~~i~~l~~rf 311 (350)
T cd00896 244 LCKEMVEAMGGAQSEGYQEFKSYCCEAYNILRKSANLILNLFSLMVDANIPDIALD------------PDKAILKVQEKF 311 (350)
T ss_pred ccHHHHHHhCCCCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHHHcCCCCcccccC------------HHHHHHHHHHHh
Confidence 9999999999999999 99999999999999999999999999999999887541 246788999998
Q ss_pred hccccccCCCCCCCCCHHHHHHHHHHHHhCcc--hhhhcCCcccCCC
Q 000134 2052 QGSVVGVGAAPSLPLAVEGQARRLIAEAVSHK--NLGKMYIWWMPWF 2096 (2096)
Q Consensus 2052 ~g~~~~~~~~~~~~lsv~~qV~~LI~~Atd~~--nL~~My~gW~Pwl 2096 (2096)
.--.. .-....++..||++|.+.. ++.-++..|..||
T Consensus 312 ~l~~s--------~~ea~~~~~~lI~~s~~~~~t~~~d~~h~~aq~~ 350 (350)
T cd00896 312 RLDLS--------DEEAIKHFQNLINDSVNALFPVVVDRLHAWAQYW 350 (350)
T ss_pred CCCCC--------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 73221 1134567999999999874 6777777787765
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin |
| >cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-51 Score=492.48 Aligned_cols=277 Identities=22% Similarity=0.378 Sum_probs=240.0
Q ss_pred CCcceEeeec-CceEEecCCCcceEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeee
Q 000134 1745 SDLPTISGIA-DEAEILSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRT 1821 (2096)
Q Consensus 1745 ~~~v~I~~f~-~~v~V~~S~q~PkrI~i~gsD--Gk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~t 1821 (2096)
.+.+.|.++. +++.|++|+++|++|++.|+| |+.|.+++|++||||||+++||++++||++|+++. .+|+++|
T Consensus 54 ~p~~~~~~i~~~~~~v~~S~~~P~~l~f~~~d~~g~~~~~i~K~gDDLRQD~l~~Qli~lm~~i~~~~~----ldL~l~~ 129 (353)
T cd05166 54 NPALDVKGIDVRECSYFNSNALPLKISFVNADPMGENISVIFKAGDDLRQDMLVLQMINIMDKIWLQEG----LDLRMIT 129 (353)
T ss_pred CCceEEEeEEcCceEEeccccCceEEEEEecCCCCCEEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCC----CCceeEE
Confidence 4567788886 789999999999999999999 99999999999999999999999999999998864 6899999
Q ss_pred cceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHh
Q 000134 1822 FAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLT 1901 (2096)
Q Consensus 1822 Y~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~ 1901 (2096)
|.|+|+++++|+||||+|+.|+++|..++ |.. +. ++ .+.+++||..
T Consensus 130 Y~vip~~~~~GlIE~V~ns~tl~~I~~~~----g~~-----------------~~------~~-------~~~l~~~l~~ 175 (353)
T cd05166 130 FRCLSTGYDRGMVELVPDAETLRKIQVEE----GLT-----------------GS------FK-------DRPIAKWLMK 175 (353)
T ss_pred EEEEEcCCCcceEEEeCCchhHHHHHHHh----Ccc-----------------cc------cc-------chhHHHHHHH
Confidence 99999999999999999999999986542 110 00 00 1367899999
Q ss_pred hCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCC--CCCCCCccccHHHH
Q 000134 1902 TFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE--KPELVPFRLTQNMI 1979 (2096)
Q Consensus 1902 ~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~--~pE~VPFRLT~nmv 1979 (2096)
.+|++.+|..+|.+|++|+|+|||+|||||+||||++|||++ .+|+++|||||++|++++.+. .||.||||||++|+
T Consensus 176 ~~~~~~~~~~a~~nF~~S~A~ysvv~YiLgigDRH~~NILl~-~~G~l~HIDFG~~lg~~~~~~~~~~E~~PFrLT~emv 254 (353)
T cd05166 176 HNPSELEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLT-KSGHMFHIDFGKFLGHAQMFGGFKRDRAPFVFTSDMA 254 (353)
T ss_pred hCCChHHHHHHHHHHHhHHHHHHHHHHHhhccccCCCceEEC-CCCCEEEEeeHHhcccccccccCCCCCCCccccHHHH
Confidence 999999999999999999999999999999999999999999 699999999999999887543 48999999999999
Q ss_pred HhhcCC----CccchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHhhccc
Q 000134 1980 DGLGIT----GYEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQGSV 2055 (2096)
Q Consensus 1980 ~~mG~~----G~eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g~~ 2055 (2096)
++||.. +.+|.|+..|+.++.+||+|.+.|++++++|+++++.+|.. ...+..+++|+.--.
T Consensus 255 ~~~ggg~~~s~~~~~F~~~c~~~~~~lRk~~~~il~ll~~ml~s~lp~~~~--------------~~~i~~l~~r~~l~~ 320 (353)
T cd05166 255 YVINGGDKPTQRFQDFVDLCCRAYNIIRKHANLLLNLLRMMACSGLPELSK--------------IQDLKYVRDALRPQL 320 (353)
T ss_pred HHhcCCCCCcchHhHHHHHHHHHHHHHHcChHHHHHHHHHHhcCCCcccCc--------------hhHHHHHHHHhCCCC
Confidence 999854 34679999999999999999999999999999999999963 135677888876322
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHhCc
Q 000134 2056 VGVGAAPSLPLAVEGQARRLIAEAVSH 2082 (2096)
Q Consensus 2056 ~~~~~~~~~~lsv~~qV~~LI~~Atd~ 2082 (2096)
. .-....++..+|++|.+.
T Consensus 321 s--------~~ea~~~~~~~I~~s~~s 339 (353)
T cd05166 321 T--------DAEATIQFTKMIQSSLGS 339 (353)
T ss_pred C--------HHHHHHHHHHHHHHHHhh
Confidence 1 113456788999999754
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any |
| >cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-51 Score=480.00 Aligned_cols=266 Identities=21% Similarity=0.362 Sum_probs=232.7
Q ss_pred CCcceEEEEEecCCC--eeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcceeEecCCC
Q 000134 1763 LQRPKKIVLLGSDGI--KRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHT 1840 (2096)
Q Consensus 1763 ~q~PkrI~i~gsDGk--~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~ 1840 (2096)
++|||+.+..|+.+. .|.|++|++||||||+|+||++++||.+|+++ +++|.++||.|+|+++++|+||||+|+
T Consensus 15 ~~r~r~~s~~~~~~~~~~~~~i~K~gDDLRqD~l~~Ql~~~~~~i~~~~----~l~l~l~~Y~vip~~~~~GlIE~V~ns 90 (293)
T cd05168 15 KERIRKSSPYGHLKSWDLRSVIVKTGDDLRQELLAMQLIQQFDRIFKEE----GLPLWLRPYEILVTSSNSGLIETIPDT 90 (293)
T ss_pred HHHhhhcCccCcCCCCCEEEEEEeCCCCccHHHHHHHHHHHHHHHHHHC----CCCceeeeEEEEEccCCceeEEEeCCc
Confidence 679999999998755 89999999999999999999999999999976 478999999999999999999999999
Q ss_pred ccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCCh-hHHHHHHHHHHHH
Q 000134 1841 RGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEP-AAWFRARVAYAHT 1919 (2096)
Q Consensus 1841 ~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p-~~w~~~R~~ft~S 1919 (2096)
.|+++|..++.. ..+.+++||.+.|++| ..|+.+|.+|++|
T Consensus 91 ~tl~~i~k~~~~--------------------------------------~~~~l~~~f~~~~~~~~~~~~~a~~nF~~S 132 (293)
T cd05168 91 VSIDSLKKKLTS--------------------------------------KFKSLLDFFKKTFGDPSERFREAQKNFIES 132 (293)
T ss_pred hhHHHHHHHhcc--------------------------------------CCchHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 999998654210 1357889999999886 5799999999999
Q ss_pred hhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCCCCCCCCccccHHHHHhhcCCCcc--chHHHHHHH
Q 000134 1920 TAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYE--GTFLRVCEI 1997 (2096)
Q Consensus 1920 ~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~~pE~VPFRLT~nmv~~mG~~G~e--G~F~~~~~~ 1997 (2096)
+|+|||+||||||||||++||||++ +|+++|||||++|++++....||.||||||++|+++||+.|.+ |.|+..|+.
T Consensus 133 ~A~ySvv~YvLGigDRH~~NILi~~-~G~liHIDFG~~fg~~~~~~~~E~vPFrLT~~mv~~mGg~~s~~~~~F~~~c~~ 211 (293)
T cd05168 133 LAGYSLICYLLQIKDRHNGNILIDN-DGHIIHIDFGFMLSNSPGNVGFETAPFKLTQEYIEVMGGVNSDLFNYFKKLFLK 211 (293)
T ss_pred HHHHHHHHHHhhccccCCCceEEcC-CCCEEEEehHHhhcccccCCCCCCCCEEecHHHHHHhCCCCCchhHHHHHHHHH
Confidence 9999999999999999999999996 9999999999999999888889999999999999999999987 899999999
Q ss_pred HHHHHHhChhhHHHHHHHHhcCC-CcccccccCCCCccccchhHHHHHHHHHHHhhccccccCCCCCCCCCHHHHHHHHH
Q 000134 1998 TLSVLRTHRETLMSVLETFIHDP-LVEWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLI 2076 (2096)
Q Consensus 1998 t~~~LR~~~~~L~~iLe~fl~Dp-l~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g~~~~~~~~~~~~lsv~~qV~~LI 2076 (2096)
++.+||+|.+.|++++++|++|| +.+... ....+..+++|+.-... ...+..++..||
T Consensus 212 ~~~~LR~~~~~il~ll~~m~~~~~lp~f~~-------------~~~~i~~l~~r~~l~~s--------e~~a~~~~~~lI 270 (293)
T cd05168 212 GFMALRKHVDRIILLVEIMQSDSKLPCFKA-------------GEFTIQQLRDRFMLNLT--------EEQLEVFVDELI 270 (293)
T ss_pred HHHHHHhchHHHHHHHHHHccCCCCccccC-------------chHHHHHHHHHhCCCCC--------HHHHHHHHHHHH
Confidence 99999999999999999999996 333211 13568888888864321 234678999999
Q ss_pred HHHhCcchhhhcCCccc
Q 000134 2077 AEAVSHKNLGKMYIWWM 2093 (2096)
Q Consensus 2077 ~~Atd~~nL~~My~gW~ 2093 (2096)
++|.+. .-.++|-+|+
T Consensus 271 ~~s~~~-~~t~~yD~~q 286 (293)
T cd05168 271 NQSLDN-WRTRLYDKFQ 286 (293)
T ss_pred HHHHhc-hhHHHHHHHH
Confidence 999986 4667776665
|
PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII |
| >cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-50 Score=481.86 Aligned_cols=280 Identities=19% Similarity=0.306 Sum_probs=239.4
Q ss_pred CCCCcceEeeec-CceEEecCCCcceEEEEEecC-----CCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCC
Q 000134 1743 SASDLPTISGIA-DEAEILSSLQRPKKIVLLGSD-----GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRK 1816 (2096)
Q Consensus 1743 ~~~~~v~I~~f~-~~v~V~~S~q~PkrI~i~gsD-----Gk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~ 1816 (2096)
|..+.+.|.++. +++.|++|+++|++|++.|+| |+.|.+++|++||||||+++||++++||.+|+++. .+
T Consensus 57 Pl~P~~~v~~i~~~~~~v~~Sk~~P~~l~f~~~d~~~~~g~~~~~IfK~gDDLRQD~l~lQli~lm~~i~~~~~----ld 132 (366)
T cd05165 57 PLNPSLKLGELRIEKCKVMDSKKKPLWLVFENADPTALSNENVGIIFKNGDDLRQDMLTLQILRIMDSIWKEEG----LD 132 (366)
T ss_pred CCCCceeEeeeecCceEEehhhcCCcEEEEEccCcccccCCceeEEEecCCcccHHHHHHHHHHHHHHHHHhCC----CC
Confidence 445678899985 679999999999999999998 69999999999999999999999999999999864 68
Q ss_pred eeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHH
Q 000134 1817 LYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFH 1896 (2096)
Q Consensus 1817 L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~ 1896 (2096)
|+++||.|+|+++++|+||||+|+.|+.+|..+.. ... .+. | -.+.++
T Consensus 133 L~l~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~~----~~~---------------~~~------f-------~~~~l~ 180 (366)
T cd05165 133 LRMLPYGCLSTGDKIGLIEVVRDSTTIANIQQETG----GNA---------------TAA------F-------KKEALL 180 (366)
T ss_pred ceeEEEEEEEecCCceEEEEeCCchhHHHHHHhcc----ccc---------------ccc------c-------CcHHHH
Confidence 99999999999999999999999999999975421 000 000 0 123678
Q ss_pred HHHHhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCC-CC-CCCCCCccc
Q 000134 1897 KWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL-LE-KPELVPFRL 1974 (2096)
Q Consensus 1897 ~wf~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~-l~-~pE~VPFRL 1974 (2096)
+||.+.+|++..|..+|.+|++|+|+||++|||||+||||++|||+++ ||+++|||||++|+.++. ++ .||.|||||
T Consensus 181 ~wl~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRH~~NILi~~-~G~l~HIDFG~ilg~~~~~~~i~~E~~PFkL 259 (366)
T cd05165 181 HWLKEKNPTEEKLDAAIEEFTLSCAGYCVATFVLGIGDRHNDNIMVKE-TGQLFHIDFGHILGNYKSKFGINRERVPFVL 259 (366)
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcceEEcC-CCCEEEEehHHhhccCCccCCCCCCCCCeee
Confidence 999999998899999999999999999999999999999999999995 999999999999988753 55 499999999
Q ss_pred cHHHHHhhcCCCcc------chHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHH
Q 000134 1975 TQNMIDGLGITGYE------GTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIE 2048 (2096)
Q Consensus 1975 T~nmv~~mG~~G~e------G~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~ 2048 (2096)
|++|+++||+.|.+ |.|+.+|+.++.+||+|.+.|+++++.++..++.++.. ...+..++
T Consensus 260 T~emv~~mg~~~~~~~s~~f~~F~~~c~~a~~~LR~~~~~il~l~~lM~~s~ip~~~~--------------~~~i~~lr 325 (366)
T cd05165 260 TPDFVHVIGRGKKDNTSEHFQRFQDLCEKAYLALRRHGNLLIILFSMMLMSGLPELTS--------------KEDIEYLR 325 (366)
T ss_pred cHHHHHHhcccCCcCCChhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCCcccCc--------------hhHHHHHH
Confidence 99999999988776 89999999999999999999999999999988888753 13577788
Q ss_pred HHhhccccccCCCCCCCCCHHHHHHHHHHHHhC
Q 000134 2049 ARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVS 2081 (2096)
Q Consensus 2049 ~kL~g~~~~~~~~~~~~lsv~~qV~~LI~~Atd 2081 (2096)
+|+.=-.. .-....++..+|.+|.+
T Consensus 326 ~rf~l~~s--------e~eA~~~f~~~I~~s~~ 350 (366)
T cd05165 326 DTLALGKS--------EEEALKYFLDKFNEALD 350 (366)
T ss_pred HHhCCCCC--------HHHHHHHHHHHHHHHHh
Confidence 88752110 11234568889999876
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P |
| >smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-50 Score=457.59 Aligned_cols=199 Identities=39% Similarity=0.727 Sum_probs=193.0
Q ss_pred eEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCcc
Q 000134 1780 PFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDR 1859 (2096)
Q Consensus 1780 ~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~ 1859 (2096)
.|++|++||+|+|+|+||+++++|.+|++++|+++|++.++||.|+|+++++|+||||+|+.|+.+|
T Consensus 1 ~~~~K~~dDlR~D~~~~ql~~~~n~il~~~~e~~~~~l~~~~y~vip~~~~~GlIE~v~~~~sl~~i------------- 67 (202)
T smart00146 1 AVIFKGGDDLRQDERVLQLLRLMNKILQKDGETRRRDLHLRPYKVIPTGPKSGLIEVVPNSTTLHQI------------- 67 (202)
T ss_pred CeeecCCCcccHHHHHHHHHHHHHHHHHhCcccccCceEeeeeEEEEcCCCcceEEEcCCchhHHHH-------------
Confidence 4899999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCc
Q 000134 1860 QKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGEN 1939 (2096)
Q Consensus 1860 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eN 1939 (2096)
+++||.+.|++|.+|+.+|++|++|+|++|++|||+|+|||||+|
T Consensus 68 -----------------------------------l~~~~~~~~~~~~~~~~~~~~F~~SlA~~s~~~YilglgDRh~~N 112 (202)
T smart00146 68 -----------------------------------LYDWFKKKFPDPEDYFEARKNFTRSCAGYSVITYILGLGDRHNDN 112 (202)
T ss_pred -----------------------------------HHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Confidence 578999999999999999999999999999999999999999999
Q ss_pred eeeecCCCcEEeeeccccccccCCCCCC-CCCCccccHHHHHhhcCCCccchHHHHHHHHHHHHHhChhhHHHHHHHHhc
Q 000134 1940 ILFDSTTGDCVHVDFSCLFDKGLLLEKP-ELVPFRLTQNMIDGLGITGYEGTFLRVCEITLSVLRTHRETLMSVLETFIH 2018 (2096)
Q Consensus 1940 ILld~~tG~vvHIDF~~~F~kg~~l~~p-E~VPFRLT~nmv~~mG~~G~eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~ 2018 (2096)
|||+ +||+++|||||++|++++.+..| |.|||||||||+++||+.|++|.|+..|+.++++||++++.|+++|++|++
T Consensus 113 Ili~-~~G~v~hIDfg~~~~~~~~~~~~~e~vPFRLT~~~~~~lg~~~~~g~F~~~~~~~~~~Lr~~~~~i~~~l~~~~~ 191 (202)
T smart00146 113 IMLD-KTGHLFHIDFGFILGNGPKLFGFPERVPFRLTPEMVDVMGDSGYFGLFRSLCERALRALRKNSNLIMSLLELMLY 191 (202)
T ss_pred EEEe-CCCCEEEEechhhhCccccCCCCCCCCCeecCHHHHHHhCCCcccchHHHHHHHHHHHHHcCHHHHHHHHHHHcC
Confidence 9999 89999999999999999988776 999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccc
Q 000134 2019 DPLVEWTKS 2027 (2096)
Q Consensus 2019 Dpl~~W~~~ 2027 (2096)
||+.+|.+.
T Consensus 192 d~l~~~~~~ 200 (202)
T smart00146 192 DGLPDWRSG 200 (202)
T ss_pred CCChhhcCC
Confidence 999999863
|
Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities. |
| >cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-49 Score=471.69 Aligned_cols=278 Identities=22% Similarity=0.397 Sum_probs=239.4
Q ss_pred CCCCcceEeeec-CceEEecCCCcceEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeee
Q 000134 1743 SASDLPTISGIA-DEAEILSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYI 1819 (2096)
Q Consensus 1743 ~~~~~v~I~~f~-~~v~V~~S~q~PkrI~i~gsD--Gk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i 1819 (2096)
|..+.+.|.+|. +++.|++|+++|++|++.++| |+.|.+++|.+||||||+++||++++||++|+++. .+|++
T Consensus 53 Pl~P~~~i~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~IfK~gDDLRQD~l~lQli~lmd~i~~~~~----ldl~l 128 (354)
T cd05177 53 PLNPALRVKGIDADACSYFTSNAAPLKISFINANPLAKNISIIFKTGDDLRQDMLVLQIVRVMDNIWLQEG----LDMQM 128 (354)
T ss_pred CCCCCeEEEEEecCccEEehhhcCCCEEEEEecCCCCCeEEEEEeCCCcccHHHHHHHHHHHHHHHHHHcC----CCceE
Confidence 445678999997 589999999999999999999 89999999999999999999999999999999874 68999
Q ss_pred eecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHH
Q 000134 1820 RTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWF 1899 (2096)
Q Consensus 1820 ~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf 1899 (2096)
+||.|+|+++++|+||||+|+.|+++|..++ |.. +.. + .+.+.+||
T Consensus 129 ~pY~vl~t~~~~GlIE~V~ns~tl~~I~~~~----~~~-----------------~~~------~-------~~~l~~~~ 174 (354)
T cd05177 129 IIYRCLSTGKTQGLVQMVPDAVTLAKIHRES----GLI-----------------GPL------K-------ENTIEKWF 174 (354)
T ss_pred EEEEEEecCCCceEEEEeCChHhHHHHHHhh----CCC-----------------ccc------c-------hhhHHHHH
Confidence 9999999999999999999999999997642 110 000 0 12577899
Q ss_pred HhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCC--CCCCCCccccHH
Q 000134 1900 LTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE--KPELVPFRLTQN 1977 (2096)
Q Consensus 1900 ~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~--~pE~VPFRLT~n 1977 (2096)
...++++.+|..+|.+|++|+|+||++|||||+||||++|||++ .||+++|||||++|++++.+. .||+||||||++
T Consensus 175 ~~~~~~~~~~~~a~~nF~~S~AgysvvtYiLGigDRHn~NILi~-~~G~~~HIDFG~ilg~~~~~~~~~~E~~PF~LT~e 253 (354)
T cd05177 175 HMHNKLKEDYDKAVRNFFHSCAGWCVVTFILGVCDRHNDNIMLT-HSGHMFHIDFGKFLGHAQTFGSIKRDRAPFIFTSE 253 (354)
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHHHHHHHhcccCcCCCceeEc-CCCCEEEEehHHhcCCCccccCCCcCCCCeeccHH
Confidence 99999999999999999999999999999999999999999999 699999999999999997764 489999999999
Q ss_pred HHHhhcCCCccc----hHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHhhc
Q 000134 1978 MIDGLGITGYEG----TFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQG 2053 (2096)
Q Consensus 1978 mv~~mG~~G~eG----~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g 2053 (2096)
|+++||..|.++ .|+..|+.++.+||+|.+.|++++++|+++++.+|... +.+..+++|++-
T Consensus 254 mv~~~~~GG~~s~~f~~F~~~c~~a~~~lR~~~~~il~l~~lm~~s~iP~~~~~--------------~~i~~l~~~~~l 319 (354)
T cd05177 254 MEYFITEGGKKPQRFQRFVELCCRAYNIVRKHSQLLLNLLEMMLHAGLPELKDI--------------QDLKYVYNNLRP 319 (354)
T ss_pred HHHHhcCCCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccCcc--------------hHHHHHHHHhCC
Confidence 999887667654 69999999999999999999999999999999998531 236777788752
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHhC
Q 000134 2054 SVVGVGAAPSLPLAVEGQARRLIAEAVS 2081 (2096)
Q Consensus 2054 ~~~~~~~~~~~~lsv~~qV~~LI~~Atd 2081 (2096)
-.. .--...++..||++|.+
T Consensus 320 ~~s--------d~eA~~~f~~lI~~s~~ 339 (354)
T cd05177 320 QDT--------DLEATSYFTKKIKESLE 339 (354)
T ss_pred CCC--------HHHHHHHHHHHHHHHHh
Confidence 111 11234578889999886
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n |
| >cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-47 Score=460.40 Aligned_cols=280 Identities=20% Similarity=0.322 Sum_probs=236.1
Q ss_pred CCCCcceEeee-cCceEEecCCCcceEEEEEecCC-----CeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCC
Q 000134 1743 SASDLPTISGI-ADEAEILSSLQRPKKIVLLGSDG-----IKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRK 1816 (2096)
Q Consensus 1743 ~~~~~v~I~~f-~~~v~V~~S~q~PkrI~i~gsDG-----k~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~ 1816 (2096)
|..+.+.+.++ .+++.||.|+++|.++++.+.|| ..|.+++|.+||||||+++||++++||++|+++ .++
T Consensus 58 Pl~P~~~~~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~----~ld 133 (365)
T cd00894 58 PYDPGLRAGALVIEKCKVMASKKKPLWLEFKCADPTALSNETIGIIFKHGDDLRQDMLILQILRIMESIWETE----SLD 133 (365)
T ss_pred CCCCceEEEEEEcCceEEEcccCCceEEEEECCCCCccCCCceeEEEeCCCcccHHHHHHHHHHHHHHHHHHc----CCC
Confidence 33567889998 58899999999999999999887 579999999999999999999999999999875 479
Q ss_pred eeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHH
Q 000134 1817 LYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFH 1896 (2096)
Q Consensus 1817 L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~ 1896 (2096)
|++++|.|+|+++++|+||||+|+.|+++|..+.....| .++ .+.++
T Consensus 134 L~l~pY~vi~tg~~~GlIE~V~ns~tl~~I~~~~~~~~~--------------------------~~k-------~~~l~ 180 (365)
T cd00894 134 LCLLPYGCISTGDKIGMIEIVKDATTIAKIQQSTVGNTG--------------------------AFK-------DEVLS 180 (365)
T ss_pred eEEEEEEEEEecCCceEEEEcCCchhHHHHHHhcccccc--------------------------ccc-------chhHH
Confidence 999999999999999999999999999999653211000 011 13678
Q ss_pred HHHHhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCC-C-CCCCCCccc
Q 000134 1897 KWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL-E-KPELVPFRL 1974 (2096)
Q Consensus 1897 ~wf~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l-~-~pE~VPFRL 1974 (2096)
+||.+.+|++..|..++.+|++|+|+||++|||||+||||++||||+ .+|+++|||||++|+.++.+ . .||+|||||
T Consensus 181 ~~l~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLGIgDRHndNImi~-~~G~lfHIDFG~ilg~~~~~~gi~~E~~PFkL 259 (365)
T cd00894 181 HWLKEKCPIEEKFQAAVERFVYSCAGYCVATFVLGIGDRHNDNIMIT-ETGNLFHIDFGHILGNYKSFLGINKERVPFVL 259 (365)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHhHHHHHHHHhccccCccccceeEc-CCCCEEEEeeHHhhCCCCccCCCCCCCCCeee
Confidence 99999999999999999999999999999999999999999999999 59999999999999988764 3 499999999
Q ss_pred cHHHHHhhcCCCcc-----chHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHH
Q 000134 1975 TQNMIDGLGITGYE-----GTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEA 2049 (2096)
Q Consensus 1975 T~nmv~~mG~~G~e-----G~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~ 2049 (2096)
|++|+++||+.|.+ +.|+..|+.++.+||+|.+.|+++++.++..-+.+... .+.+..+++
T Consensus 260 T~e~v~vmg~~gg~~s~~f~~F~~~c~~a~~~LRk~~~lil~L~~lM~~sgip~l~~--------------~~~i~~l~~ 325 (365)
T cd00894 260 TPDFLFVMGTSGKKTSLHFQKFQDVCVKAYLALRHHTNLLIILFSMMLMTGMPQLTS--------------KEDIEYIRD 325 (365)
T ss_pred cHHHHHHhCccCCcCChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCcccCc--------------chHHHHHHH
Confidence 99999999988765 47999999999999999999999999999765555321 134777888
Q ss_pred HhhccccccCCCCCCCCCHHHHHHHHHHHHhCc
Q 000134 2050 RLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSH 2082 (2096)
Q Consensus 2050 kL~g~~~~~~~~~~~~lsv~~qV~~LI~~Atd~ 2082 (2096)
|++--.. .-....++..+|++|.+.
T Consensus 326 ~~~l~~s--------e~eA~~~f~~~I~~s~~~ 350 (365)
T cd00894 326 ALTVGKS--------EEDAKKHFLDQIEVCRDK 350 (365)
T ss_pred HhCCCCC--------HHHHHHHHHHHHHHHHhc
Confidence 8752111 112345688899998754
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and |
| >cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-47 Score=459.35 Aligned_cols=277 Identities=22% Similarity=0.326 Sum_probs=228.8
Q ss_pred CCCCcceEeeec-CceEEecCCCcceEEEEEec--CCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeee
Q 000134 1743 SASDLPTISGIA-DEAEILSSLQRPKKIVLLGS--DGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYI 1819 (2096)
Q Consensus 1743 ~~~~~v~I~~f~-~~v~V~~S~q~PkrI~i~gs--DGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i 1819 (2096)
|..+.+.|.++. +++.||+|+++|++|++.+. +|..|.+++|++||||||+++||++++||++|++. .++|++
T Consensus 56 PldP~~~v~~i~~~~~~v~~S~~~Pl~l~f~~~~~~g~~~~~IfK~gDDLRQD~l~lQli~lm~~i~k~~----~ldL~l 131 (362)
T cd05173 56 PLNPSIILSELNVEKCKYMDSKMKPLWIVYNNKLFGGDSLGIIFKNGDDLRQDMLTLQILRLMDTLWKEA----GLDLRI 131 (362)
T ss_pred CCCCceEEEEEEcCceEEecccCCCeEEEEeecCCCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHC----CCCeee
Confidence 445678999996 66999999999999999875 79999999999999999999999999999999986 478999
Q ss_pred eecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHH
Q 000134 1820 RTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWF 1899 (2096)
Q Consensus 1820 ~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf 1899 (2096)
++|.|+|+++++|+||||+|+.|+.+|..+.. ... . .. .+ -.+.+++||
T Consensus 132 ~pY~vi~t~~~~GlIE~V~ns~tl~~I~~~~~----~~~---~-----------~~------~f-------~~~~l~~~l 180 (362)
T cd05173 132 VPYGCLATGDRSGLIEVVSSAETIADIQLNSS----NVA---A-----------AA------AF-------NKDALLNWL 180 (362)
T ss_pred EEEEEEEccCCceEEEEeCCchhHHHHHHhcc----ccc---h-----------hc------cc-------ChhHHHHHH
Confidence 99999999999999999999999999964311 000 0 00 00 013678899
Q ss_pred HhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeecccccccc--CCCCCCCCCCccccHH
Q 000134 1900 LTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKG--LLLEKPELVPFRLTQN 1977 (2096)
Q Consensus 1900 ~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg--~~l~~pE~VPFRLT~n 1977 (2096)
.+.+++ ..|..++.+|++|+|+||++|||||+||||++||||+ .+|+++|||||++|+.. .....||+||||||++
T Consensus 181 ~~~~~~-~~~~~a~~nF~~S~AgYsvvtYILGIGDRHn~NILi~-~~G~l~HIDFG~ilg~~~~~~~~~~E~vPFkLT~e 258 (362)
T cd05173 181 KEYNSG-DDLERAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVR-KNGQLFHIDFGHILGNFKSKFGIKRERVPFILTYD 258 (362)
T ss_pred HhcCCc-HHHHHHHHHHHHHHHHHHHHHHHhhccccCCCceEEC-CCCCEEEEehHHhhccCCcccCCCCCCCCeeecHH
Confidence 886554 4677799999999999999999999999999999999 69999999999999863 3345699999999999
Q ss_pred HHHhhc--CCC---ccchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHhh
Q 000134 1978 MIDGLG--ITG---YEGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQ 2052 (2096)
Q Consensus 1978 mv~~mG--~~G---~eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~ 2052 (2096)
|+++|| ..| .+|.|+..|+.++.+||+|.+.|+++++.++..++.++.. .+.+..+++|+.
T Consensus 259 mv~vm~~G~~g~s~~~~~F~~~c~~a~~~LRk~~~lil~l~~lM~~s~ip~~~~--------------~~~i~~l~~r~~ 324 (362)
T cd05173 259 FIHVIQQGKTGNTEKFGRFRQYCEDAYLILRKNGNLFITLFALMLTAGLPELTS--------------VKDIQYLKDSLA 324 (362)
T ss_pred HHHHHhcCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCccccc--------------hhHHHHHHHhcC
Confidence 999995 333 4789999999999999999999999999999988877643 135677777774
Q ss_pred ccccccCCCCCCCCCHH---HHHHHHHHHHhC
Q 000134 2053 GSVVGVGAAPSLPLAVE---GQARRLIAEAVS 2081 (2096)
Q Consensus 2053 g~~~~~~~~~~~~lsv~---~qV~~LI~~Atd 2081 (2096)
= .+|-+ .+...+|.+|.+
T Consensus 325 l-----------~~se~eA~~~f~~~i~~s~~ 345 (362)
T cd05173 325 L-----------GKSEEEALKQFRQKFDEALR 345 (362)
T ss_pred C-----------CCCHHHHHHHHHHHHHHHHH
Confidence 2 22322 356677777764
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de |
| >cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-47 Score=455.04 Aligned_cols=277 Identities=19% Similarity=0.296 Sum_probs=226.2
Q ss_pred CCCCcceEeee-cCceEEecCCCcceEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeee
Q 000134 1743 SASDLPTISGI-ADEAEILSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYI 1819 (2096)
Q Consensus 1743 ~~~~~v~I~~f-~~~v~V~~S~q~PkrI~i~gsD--Gk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i 1819 (2096)
|..+.+.+.++ .+++.|++|+++|++|++.|.| |+.|.+++|++||||||+++||++++||.+|+++. .+|++
T Consensus 56 Pl~p~~~~~~~~~~~~~v~~Sk~~Pl~l~f~~~~~~g~~~~~IfK~gDDLRQD~l~~Qli~lmd~i~k~~~----ldL~l 131 (361)
T cd05174 56 PLSPSIILCEVCVDQCTFMDSKMKPLWIMYKNEEAGGGSVGIIFKNGDDLRQDMLTLQMIQLMDVLWKQEG----LDLRM 131 (361)
T ss_pred CCCCceEEEEEEcCcEEEEeccCCceEEEEeecCCCCCEEEEEEeCCCchhHHHHHHHHHHHHHHHHHHCC----CCeee
Confidence 33456677776 5899999999999999999977 99999999999999999999999999999998864 79999
Q ss_pred eecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHH
Q 000134 1820 RTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWF 1899 (2096)
Q Consensus 1820 ~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf 1899 (2096)
++|.|+|+++++|+||||+|+.|+.+|..+.... + . .+ .+. .+.+.+||
T Consensus 132 ~pY~vi~tg~~~GlIE~V~ns~Tl~~I~~~~~~~-~------~-----------~~------~f~-------~~~l~~~l 180 (361)
T cd05174 132 TPYGCLSTGDKTGLIEVVKNSDTIANIQLNKSNM-A------A-----------TA------AFN-------KDALLNWL 180 (361)
T ss_pred EEEEEEEecCCceEEEEeCCchhHHHHHHhhccc-c------h-----------hc------ccc-------chHHHHHH
Confidence 9999999999999999999999999996532100 0 0 00 000 14678999
Q ss_pred HhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccC--CCCCCCCCCccccHH
Q 000134 1900 LTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGL--LLEKPELVPFRLTQN 1977 (2096)
Q Consensus 1900 ~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~--~l~~pE~VPFRLT~n 1977 (2096)
.+.+|+ ..|..++.+|++|+|+||++||||||||||++|||++ .+|+++|||||++|+..+ ....||+||||||++
T Consensus 181 ~~~~~~-~~~~~A~~nF~~S~AgysVvtYiLGIGDRHn~NILi~-~~G~l~HIDFG~ilg~~~~~~~~~~E~vPFkLT~e 258 (361)
T cd05174 181 KSKNPG-DALDQAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIR-ESGQLFHIDFGHFLGNFKTKFGINRERVPFILTYD 258 (361)
T ss_pred HhcCCc-HHHHHHHHHHHHHHHHHHHHHHHhcccCcCccceeEc-CCCCEEEEehHHhhcCCcccCCCCCCCCCeeccHH
Confidence 998876 3566789999999999999999999999999999998 599999999999998753 334699999999999
Q ss_pred HHHhhcCCCc-----cchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHhh
Q 000134 1978 MIDGLGITGY-----EGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQ 2052 (2096)
Q Consensus 1978 mv~~mG~~G~-----eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~ 2052 (2096)
|+++||..|. .|.|+..|+.++.+||+|.+.|+++++.++...+.+... .+.+..+++|+.
T Consensus 259 ~v~vmg~G~~~~s~~f~~F~~~c~~a~~~LRk~~~~il~l~~lM~~sgip~~~~--------------~~~i~~l~~~~~ 324 (361)
T cd05174 259 FVHVIQQGKTNNSEKFERFRGYCEQAYKILRRHGTLFLHLFALMKAAGLPELNC--------------SKDIQYLKDSLA 324 (361)
T ss_pred HHHHHccCCCCCCchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCCCccCc--------------hhHHHHHHHHhC
Confidence 9999974322 369999999999999999999999999998665554321 245778888875
Q ss_pred ccccccCCCCCCCCCHH---HHHHHHHHHHhC
Q 000134 2053 GSVVGVGAAPSLPLAVE---GQARRLIAEAVS 2081 (2096)
Q Consensus 2053 g~~~~~~~~~~~~lsv~---~qV~~LI~~Atd 2081 (2096)
= .+|-+ .+...+|.+|..
T Consensus 325 l-----------~~se~ea~~~f~~~i~~s~~ 345 (361)
T cd05174 325 L-----------GKTEEEALKHFRVKFNEALR 345 (361)
T ss_pred C-----------CCCHHHHHHHHHHHHHHHHh
Confidence 2 23323 345567777763
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and |
| >cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-47 Score=450.59 Aligned_cols=257 Identities=22% Similarity=0.381 Sum_probs=219.7
Q ss_pred eEEecCCC-cceEEEEEecCC--CeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcce
Q 000134 1757 AEILSSLQ-RPKKIVLLGSDG--IKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGM 1833 (2096)
Q Consensus 1757 v~V~~S~q-~PkrI~i~gsDG--k~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GL 1833 (2096)
.++++|.. .|-.+.+.-.|| ..|.|++|++||||||+++||++++||.+|++. +++|+++||.|+|+++++|+
T Consensus 8 ~k~~~~~~~~P~~~~~~~~~~~~~~~~~i~K~gDDLRqD~l~~Ql~~l~~~i~~~~----~l~l~l~~Y~vi~~s~~~Gl 83 (289)
T cd00893 8 PKILQSALKIPYLELKKLTDSTLINSEFIVKCGDDLRQDILATQIITELQKIFELM----FLDLWLNPYLVLPVSKTGGI 83 (289)
T ss_pred chHHHHhhcCchhhccCccCCCCeeEEEEEECCCcccHHHHHHHHHHHHHHHHHHc----CCCceeEEEEEEECCCCcee
Confidence 45566654 566666655555 599999999999999999999999999999876 57999999999999999999
Q ss_pred eEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCC--ChhHHHH
Q 000134 1834 VEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFS--EPAAWFR 1911 (2096)
Q Consensus 1834 IEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~--~p~~w~~ 1911 (2096)
||||+|+.|+++|..++ .+.+++||.+.|+ ++.+|+.
T Consensus 84 IE~V~ns~tl~~i~~~~-----------------------------------------~~~l~~~~~~~~~~~~~~~~~~ 122 (289)
T cd00893 84 IEFIPNSISIHEIKKQQ-----------------------------------------INSLYDYFLELYGSYTTEAFLQ 122 (289)
T ss_pred EEEeCCchhHHHHHHhc-----------------------------------------cccHHHHHHHHcCCCCcHHHHH
Confidence 99999999999986431 0125567778876 4678999
Q ss_pred HHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCC-CCCCCCCccccHHHHHhhcCCCcc--
Q 000134 1912 ARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL-EKPELVPFRLTQNMIDGLGITGYE-- 1988 (2096)
Q Consensus 1912 ~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l-~~pE~VPFRLT~nmv~~mG~~G~e-- 1988 (2096)
+|.+|++|+|+|||+|||||+||||++|||||+ +|+++|||||++|++++.. ..||.||||||++|+++||+.|.+
T Consensus 123 a~~nF~~SlA~ySvv~YiLgigDRH~~NILid~-~G~liHIDFG~ilg~~p~~~~~~E~~PFrLT~emv~~mGg~~s~~f 201 (289)
T cd00893 123 ARYNFIESMAGYSLLCYLLQIKDRHNGNILLDS-DGHIIHIDFGFILDSSPGNNLGFEPAAFKFTKEMVDFMGGKKSDDF 201 (289)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCceEECC-CCCEEEEehHHhhCcCCcCCCCCCCCCeeecHHHHHHhCCCCChhH
Confidence 999999999999999999999999999999996 9999999999999998765 458999999999999999999987
Q ss_pred chHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHhhccccccCCCCCCCCCH
Q 000134 1989 GTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAV 2068 (2096)
Q Consensus 1989 G~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g~~~~~~~~~~~~lsv 2068 (2096)
|.|+..|+.++.+||+|.+.|++++++|+++|+.+|.. +.+..+++|++-... +-..
T Consensus 202 ~~F~~~c~~~~~~lR~~~~~il~ll~~m~~~~lp~~~~---------------~~i~~l~~r~~l~~s--------~~~a 258 (289)
T cd00893 202 KKFRYLCLRGFIAVRKHMDLVISLVYLLIFSGLPCFRG---------------STIKKLKERLCLNMS--------EKEA 258 (289)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHccCCCcccCH---------------HHHHHHHHHcCCCCC--------HHHH
Confidence 79999999999999999999999999999999998841 356778888753211 2235
Q ss_pred HHHHHHHHHHHhCc
Q 000134 2069 EGQARRLIAEAVSH 2082 (2096)
Q Consensus 2069 ~~qV~~LI~~Atd~ 2082 (2096)
...+..+|++|.+.
T Consensus 259 ~~~~~~lI~~s~~~ 272 (289)
T cd00893 259 INTVMKKIDSSYNS 272 (289)
T ss_pred HHHHHHHHHHHHhh
Confidence 56788999999874
|
PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. |
| >PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-47 Score=447.31 Aligned_cols=231 Identities=40% Similarity=0.797 Sum_probs=181.0
Q ss_pred eeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCC
Q 000134 1778 KRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKF 1857 (2096)
Q Consensus 1778 ~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~ 1857 (2096)
.|+||+|++||+|||+|+||+++++|.+|.+++++++ +++|.|+|+++++||||||+++.|+.+|+.+++...+..
T Consensus 1 ~y~~l~K~~dDlr~D~~~~ql~~~~n~~l~~~~~~~~----~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~~ 76 (235)
T PF00454_consen 1 EYSFLVKGGDDLRQDERVMQLFRLMNRILKKEGETRE----IRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGHS 76 (235)
T ss_dssp -EEEEEEESS-CHHHHHHHHHHHHHHHHHHHTT-------------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTTT
T ss_pred CceEEEECCchhhchhHHHHHHHHHHHHHhcCCCCce----EEEeEEEecCCCCceeEEeccccchhHhhcccccccccc
Confidence 4999999999999999999999999999999988665 999999999999999999999999999998876554432
Q ss_pred ccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCC
Q 000134 1858 DRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHG 1937 (2096)
Q Consensus 1858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~ 1937 (2096)
.. .+. ...... ..........++.+.+||...++++++|+.+|++|++|+|++|+++||+|+|||||
T Consensus 77 ~~---~~~-~~~~~~---------~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~r~~f~~sla~~si~~yilg~gDRh~ 143 (235)
T PF00454_consen 77 ND---NPS-RKYKAK---------LFEKQSSKVPKDGLRQYFLKSFPSAEEWFEARKNFTRSLAAYSILDYILGLGDRHP 143 (235)
T ss_dssp CS---C----------------------------TTHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHHHT-CS--T
T ss_pred cc---ccc-cccccc---------cccccccccccchHHHHHHhcCCChhhhHhhhHhhHHHHHHHhhceEEEeecCCCc
Confidence 21 110 000000 01222233445699999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCcEEeeeccccccccCCCCCCCCCCccccHHHHHhh----cCCCccchHHHHHHHHHHHHHhChhhHHHHH
Q 000134 1938 ENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGL----GITGYEGTFLRVCEITLSVLRTHRETLMSVL 2013 (2096)
Q Consensus 1938 eNILld~~tG~vvHIDF~~~F~kg~~l~~pE~VPFRLT~nmv~~m----G~~G~eG~F~~~~~~t~~~LR~~~~~L~~iL 2013 (2096)
+|||++..||+++|||||++|+ ++.+++||.||||||+||+++| |+.|.+|.|+.+|+.++++||++++.|+++|
T Consensus 144 ~Nili~~~~g~~~hIDfg~~f~-~~~~~~~e~vPFrLT~~~~~~~~~~l~~~~~~g~f~~~~~~~~~~lr~~~~~l~~ll 222 (235)
T PF00454_consen 144 GNILIDKKTGELIHIDFGFIFG-GKHLPVPETVPFRLTRNMVNAMGGYLGPSGVEGLFRSSCEAILRALRRNKDLLLSLL 222 (235)
T ss_dssp TTEEE-ETTSEEEE--HSSCTT-HHHGSSSS--SSTTHHHHHHHTTTSSSTSHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hhheeccccceeeeEEeHHhhh-ccccCCCCCCCeEeCHHHHHHHhccCCCchhHhHHHHHHHHHHHHHhcChHHHHHHH
Confidence 9999999999999999999999 8888999999999999999999 9999999999999999999999999999999
Q ss_pred HHHhcCCCccccc
Q 000134 2014 ETFIHDPLVEWTK 2026 (2096)
Q Consensus 2014 e~fl~Dpl~~W~~ 2026 (2096)
++|++||+++|.+
T Consensus 223 ~~~~~d~l~~w~~ 235 (235)
T PF00454_consen 223 ELFLRDPLIDWRK 235 (235)
T ss_dssp HHTTTSCSTTSS-
T ss_pred HHHHhCCCCCCCC
Confidence 9999999999964
|
Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A .... |
| >cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-46 Score=445.13 Aligned_cols=278 Identities=22% Similarity=0.334 Sum_probs=232.0
Q ss_pred CCCcceEeeec-CceEEecCCCcceEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeee
Q 000134 1744 ASDLPTISGIA-DEAEILSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIR 1820 (2096)
Q Consensus 1744 ~~~~v~I~~f~-~~v~V~~S~q~PkrI~i~gsD--Gk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~ 1820 (2096)
..+.+.+.++. +.+.|++|+++|++|++.++| |+.|.+++|.+||||||+++||++++||++|++.. .+|+++
T Consensus 53 l~p~~~~~~~~~~~c~v~~S~~~Pl~l~f~~~d~~g~~~~~ifK~gDDLRQD~l~lQli~lmd~i~~~~~----ldL~l~ 128 (353)
T cd05176 53 LSPSLVAKELNIKVCSFFSSNAVPLKIALVNADPLGEEINVMFKVGEDLRQDMLALQMIKIMDKIWLQEG----LDLRMV 128 (353)
T ss_pred CCcceeEccEehheeEEecccCCceEEEEEccCCCCCEEEEEEeCCCCccHHHHHHHHHHHHHHHHHHCC----CCeEEE
Confidence 34556777874 779999999999999999999 99999999999999999999999999999998764 589999
Q ss_pred ecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHH
Q 000134 1821 TFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFL 1900 (2096)
Q Consensus 1821 tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~ 1900 (2096)
+|.|+|+++++|+||||||+.|+++|..++ ...|. ++ ...+.+|+.
T Consensus 129 pY~vl~tg~~~GlIE~V~ns~tl~~I~~~~-~~~~~--------------------------~~-------~~~l~~~l~ 174 (353)
T cd05176 129 IFKCLSTGKDRGMVELVPASETLRKIQVEY-GVTGS--------------------------FK-------DKPLAEWLR 174 (353)
T ss_pred EEEEEEcCCCceEEEEeCCcHhHHHHHHHh-CcCCc--------------------------cc-------cchHHHHHH
Confidence 999999999999999999999999986532 11010 00 124678999
Q ss_pred hhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCC--CCCCCCccccHHH
Q 000134 1901 TTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE--KPELVPFRLTQNM 1978 (2096)
Q Consensus 1901 ~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~--~pE~VPFRLT~nm 1978 (2096)
..+|++.+|..+|.+|++|+|+||++|||||+||||++||||+ .+|+++|||||++|+.++.+. .||.||||||++|
T Consensus 175 ~~~~~~~~~~~a~~nFi~S~AgYsv~tYiLGIgDRHn~NILi~-~~Ghl~HIDFG~ilg~~~~~g~~~~e~~PFkLT~em 253 (353)
T cd05176 175 KYNPAEEEYEKASENFIYSCAGCCVATYVLGICDRHNDNIMLR-STGHMFHIDFGKFLGHAQMFGSFKRDRAPFVLTSDM 253 (353)
T ss_pred HhCCChHHHHHHHHHHHHHHHHHHHHhhhccccCcCCcceEEc-CCCCEEEEeeHHhcCCCccccCCCCCCCCeeecHHH
Confidence 9899999999999999999999999999999999999999998 799999999999999887653 5899999999999
Q ss_pred HHhhcCCCc----cchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHhhcc
Q 000134 1979 IDGLGITGY----EGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQGS 2054 (2096)
Q Consensus 1979 v~~mG~~G~----eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g~ 2054 (2096)
+++||..+. ...|+..|+.++.+||+|.+.|+++++.++.-.+.+... ...+..+++|++--
T Consensus 254 v~~mgG~~~~s~~f~~F~~lc~~af~~LRk~~~~il~L~~lM~~s~iP~~~~--------------~~~i~~l~~r~~l~ 319 (353)
T cd05176 254 AYVINGGEKPTIRFQLFVDLCCQAYNLIRKHSNLFLNLLSLMTQSGLPELTG--------------VQDLKYVYDALQPQ 319 (353)
T ss_pred HHHhcCCCCcchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCcccCC--------------chHHHHHHHHhCCC
Confidence 999984322 236999999999999999999999999999777766432 12467788887521
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHhCc
Q 000134 2055 VVGVGAAPSLPLAVEGQARRLIAEAVSH 2082 (2096)
Q Consensus 2055 ~~~~~~~~~~~lsv~~qV~~LI~~Atd~ 2082 (2096)
.. .-....++..||++|.+.
T Consensus 320 ~s--------d~ea~~~f~~lI~~s~~s 339 (353)
T cd05176 320 TT--------DAEATIFFTRLIESSLGS 339 (353)
T ss_pred CC--------HHHHHHHHHHHHHHHHhc
Confidence 11 112446788999988663
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n |
| >cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-46 Score=442.72 Aligned_cols=279 Identities=22% Similarity=0.346 Sum_probs=235.5
Q ss_pred CCcceEeeec-CceEEecCC-CcceEEEEEecCCC-------------eeeEEecCCCcchhhHHHHHHHHHHHHHhccC
Q 000134 1745 SDLPTISGIA-DEAEILSSL-QRPKKIVLLGSDGI-------------KRPFLCKPKDDLRKDSRMMEFTAMINRLLSKY 1809 (2096)
Q Consensus 1745 ~~~v~I~~f~-~~v~V~~S~-q~PkrI~i~gsDGk-------------~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~ 1809 (2096)
.+...+.++. ++..+|.|+ ..|-++++...|+. .+.+++|.+||||||+++||++++||++|++.
T Consensus 5 ~P~~~v~~i~~~~~~~~~S~ak~P~~l~F~~~~~~~~~~~~~~~~~~~~~~~IfK~gDDLRQD~l~~Qli~lm~~i~~~~ 84 (311)
T cd05167 5 NPDYVIVGIDYKSGTPLQSHAKAPILVTFKVKDRGGDELEEVDDGKVSWQACIFKVGDDCRQDMLALQLISLFKNIFQSA 84 (311)
T ss_pred CCceEEEEEEccccEEeccCCCCceEEEEEecCCCccccccccccccceEEEEEeCCCCccHHHHHHHHHHHHHHHHHHC
Confidence 4567888885 779999998 57999999998764 49999999999999999999999999999875
Q ss_pred CcccCCCeeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcC
Q 000134 1810 PESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILP 1889 (2096)
Q Consensus 1810 ~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 1889 (2096)
+++|++++|.|+|+++++|+||||+|+.|+++|...
T Consensus 85 ----~ldl~l~~Y~vi~t~~~~GlIE~V~ns~s~~~i~~~---------------------------------------- 120 (311)
T cd05167 85 ----GLDLYLFPYRVVATGPGCGVIEVVPNSKSRDQIGRT---------------------------------------- 120 (311)
T ss_pred ----CCCeEeEEEeEEecCCCceEEEEeCCcHHHHHHHhh----------------------------------------
Confidence 479999999999999999999999999999877321
Q ss_pred CCchHHHHHHHhhCCCh--hHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCC-CC
Q 000134 1890 MFPPVFHKWFLTTFSEP--AAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLL-EK 1966 (2096)
Q Consensus 1890 ~~~pvl~~wf~~~f~~p--~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l-~~ 1966 (2096)
....+.+||.+.|+++ .+|..+|.+|++|+|+|||+|||||+||||++|||||. +|+++|||||++|++++.. ..
T Consensus 121 -~~~~l~~~f~~~~~~~~~~~~~~a~~nF~~S~Agysv~tYiLgigDRHn~NILid~-~G~l~HIDFG~il~~~p~~~~~ 198 (311)
T cd05167 121 -TDNGLYEYFTSKYGDESSLAFQKARENFIRSMAAYSLISYLLQIKDRHNGNIMIDD-DGHIIHIDFGFIFEISPGGNLK 198 (311)
T ss_pred -cccHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccccCccceEEcC-CCCEEEEeeHHhhccCCCCCCC
Confidence 0124778999988654 78999999999999999999999999999999999996 9999999999999987653 45
Q ss_pred CCCCCccccHHHHHhhcCCCccc---hHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHH
Q 000134 1967 PELVPFRLTQNMIDGLGITGYEG---TFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRA 2043 (2096)
Q Consensus 1967 pE~VPFRLT~nmv~~mG~~G~eG---~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~ 2043 (2096)
+|+||||||++|+++||+.|..| .|+..|..++.+||+|.+.|+++++.|+...+.++. .+.
T Consensus 199 ~E~~PFkLT~emv~~mGg~~~s~~f~~F~~~~~~~~~~lR~~~~~il~l~~lm~~s~lp~~~---------------~~~ 263 (311)
T cd05167 199 FESAPFKLTKEMVQIMGGSMEATPFKWFVELCVRAFLAVRPYMDEIVSLVELMLDSGLPCFR---------------GDT 263 (311)
T ss_pred cCCCCEeecHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHcCCchhhh---------------HHH
Confidence 89999999999999999988666 677788889999999999999999999987776643 246
Q ss_pred HHHHHHHhhccccccCCCCCCCCCHHHHHHHHHHHHhCcchhhhcCCccc
Q 000134 2044 ISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHKNLGKMYIWWM 2093 (2096)
Q Consensus 2044 l~~i~~kL~g~~~~~~~~~~~~lsv~~qV~~LI~~Atd~~nL~~My~gW~ 2093 (2096)
+..+++|+.-... .-....++..||++|.+.. -.++|-.|+
T Consensus 264 i~~l~~rf~l~~s--------e~~a~~~~~~lI~~s~~~~-~t~~yD~~q 304 (311)
T cd05167 264 IKNLRQRFAPEKS--------EREAAEFMLSLIAESYEKF-RTKGYDQFQ 304 (311)
T ss_pred HHHHHHHhCCCCC--------HHHHHHHHHHHHHHHHhch-hHHHHHHHH
Confidence 7788888753211 2235678999999999874 345555443
|
PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole |
| >cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=420.50 Aligned_cols=279 Identities=20% Similarity=0.331 Sum_probs=233.7
Q ss_pred CCCCcceEeeec-CceEEecCCCcceEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeee
Q 000134 1743 SASDLPTISGIA-DEAEILSSLQRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYI 1819 (2096)
Q Consensus 1743 ~~~~~v~I~~f~-~~v~V~~S~q~PkrI~i~gsD--Gk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i 1819 (2096)
|..+.+++.++. ++..|+.|+.+|.+|++.+.| |..|.+++|.+||||||+.++|++++||++|+++. .+|++
T Consensus 53 PldP~~~v~~i~~~~~~v~~S~~~Pl~l~f~~~d~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~----ldl~l 128 (354)
T cd00895 53 PLSPSLLVKGIVPRDCSYFNSNAVPLKLSFQNVDPLGENIRVIFKCGDDLRQDMLTLQMIRIMNKIWVQEG----LDMRM 128 (354)
T ss_pred CCCCCeEEEEEEcCceEEecccCCCeEEEEEecCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHHHcC----CCceE
Confidence 345678899985 789999999999999999999 89999999999999999999999999999999974 68999
Q ss_pred eecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHH
Q 000134 1820 RTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWF 1899 (2096)
Q Consensus 1820 ~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf 1899 (2096)
++|.|+|+++++|+||||||+.|+++|..+. |.... ++ ...+.+||
T Consensus 129 ~pY~vl~tg~~~G~IE~V~ns~tl~~I~~~~----g~~g~-----------------------~~-------~~~l~~~l 174 (354)
T cd00895 129 VIFRCFSTGRGRGMVEMIPNAETLRKIQVEH----GVTGS-----------------------FK-------DRPLADWL 174 (354)
T ss_pred EEEEEEecCCCceEEEEeCChhhHHHHHHHh----CcCcc-----------------------cc-------cchHHHHH
Confidence 9999999999999999999999999997541 11000 00 12477899
Q ss_pred HhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCC--CCCCCCccccHH
Q 000134 1900 LTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE--KPELVPFRLTQN 1977 (2096)
Q Consensus 1900 ~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~--~pE~VPFRLT~n 1977 (2096)
.+.+|++.+|..+|.+|++|+|+||++|||||+||||++||||+ .+|+++|||||++|+..+.+. .+|++||+||++
T Consensus 175 ~~~~~~~~~~~~a~~nFi~S~AgYsV~tYiLgIgDRHndNImi~-~~GhlfHIDFG~iLg~~~~~g~~~re~~PF~Lt~e 253 (354)
T cd00895 175 QKHNPTEDEYEKAVENFIYSCAGCCVATYVLGICDRHNDNIMLK-TTGHMFHIDFGRFLGHAQMFGNIKRDRAPFVFTSD 253 (354)
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHHHHHHHccccccCCCceeEc-CCCCEEEEeeHHhcCCCcccCCCCcCCCCccccHH
Confidence 99999999999999999999999999999999999999999999 699999999999999876543 589999999999
Q ss_pred HHHhhcCCCcc----chHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHhhc
Q 000134 1978 MIDGLGITGYE----GTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQG 2053 (2096)
Q Consensus 1978 mv~~mG~~G~e----G~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g 2053 (2096)
|+++||..|.+ ..|+..|..++.+||+|.+.|+++++.++.--+.+... .+.+..+++|+.-
T Consensus 254 mv~vm~gg~~~S~~f~~F~~lc~~ay~~lRk~~~~il~L~~lM~~sgiP~l~~--------------~~~i~~l~~rf~l 319 (354)
T cd00895 254 MAYVINGGDKPSSRFHDFVDLCCQAYNLIRKHTHLFLNLLGLMLSCGIPELSD--------------LEDLKYVYDALRP 319 (354)
T ss_pred HHHHhcCCCCCChhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCcccCc--------------chHHHHHHHHhCC
Confidence 99999754432 36999999999999999999999999999654444321 2357778888752
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHhCc
Q 000134 2054 SVVGVGAAPSLPLAVEGQARRLIAEAVSH 2082 (2096)
Q Consensus 2054 ~~~~~~~~~~~~lsv~~qV~~LI~~Atd~ 2082 (2096)
-.. .--...++..||+.|.+.
T Consensus 320 ~~s--------e~eA~~~f~~lI~~s~~s 340 (354)
T cd00895 320 QDT--------EADATTYFTRLIESSLGS 340 (354)
T ss_pred CCC--------HHHHHHHHHHHHHHHHhh
Confidence 111 112345788999998763
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not |
| >cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=413.76 Aligned_cols=277 Identities=19% Similarity=0.316 Sum_probs=226.8
Q ss_pred CCCCcceEeeec-CceEEecCCCcceEEEEEecCC------CeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCC
Q 000134 1743 SASDLPTISGIA-DEAEILSSLQRPKKIVLLGSDG------IKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRR 1815 (2096)
Q Consensus 1743 ~~~~~v~I~~f~-~~v~V~~S~q~PkrI~i~gsDG------k~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR 1815 (2096)
|..+.+.+.++. +++.|++|+.+|.+|++.++|| ..|.+++|.+||||||+++||++++||++|++.. .
T Consensus 56 Pl~P~~~~~~i~~e~c~v~~S~~~Pl~l~f~~~d~~~~~~~~~~~~IfK~GDDLRQD~l~lQli~lmd~i~~~~~----l 131 (366)
T cd05175 56 PLNPAHQLGNLRLEECRIMSSAKRPLWLNWENPDIMSELLFQNNEIIFKNGDDLRQDMLTLQIIRIMENIWQNQG----L 131 (366)
T ss_pred CCCCceEEEEEEeccceeechhcCCeEEEEEcCCcccccccCCcceEEeCCCCccHHHHHHHHHHHHHHHHHHCC----C
Confidence 345668899985 6899999999999999999998 4699999999999999999999999999998864 6
Q ss_pred CeeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHH
Q 000134 1816 KLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVF 1895 (2096)
Q Consensus 1816 ~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl 1895 (2096)
+|++++|.|+|+++++|+||||+|+.|+.+|..+. |.. +.. ....+.+
T Consensus 132 dL~l~pY~vl~tg~~~GlIE~V~ns~tl~~I~~~~----~~~-----------------~~~-----------~~~~~~l 179 (366)
T cd05175 132 DLRMLPYGCLSIGDCVGLIEVVRNSHTIMQIQCKG----GLK-----------------GAL-----------QFNSHTL 179 (366)
T ss_pred CeEEEEEEEEEecCCceEEEEcCCchhHHHHHhcc----ccc-----------------ccc-----------ccCchhH
Confidence 89999999999999999999999999999985421 100 000 0012467
Q ss_pred HHHHHhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCC-C-CCCCCCCcc
Q 000134 1896 HKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL-L-EKPELVPFR 1973 (2096)
Q Consensus 1896 ~~wf~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~-l-~~pE~VPFR 1973 (2096)
++||.+.+++ ..|..+|.+|++|+|+||++|||||+||||++|||++ .+|+++|||||++|+.++. + ..||+||||
T Consensus 180 ~~~l~~~~~~-~~~~~a~~nF~~S~AgYsV~tYiLGIgDRHndNImi~-~~G~l~HIDFG~iLg~~p~~~~~~~E~~PFk 257 (366)
T cd05175 180 HQWLKDKNKG-EMYDAAIDLFTRSCAGYCVATFILGIGDRHNSNIMVK-DDGQLFHIDFGHFLDHKKKKFGYKRERVPFV 257 (366)
T ss_pred HHHHhhcCCc-HHHHHHHHHHHHHHHHHHHHHHHhcccccCccceeEc-CCCCEEEEehHHhhcCCCccCCCCCCCCCeE
Confidence 8899887764 5688999999999999999999999999999999999 5999999999999998764 3 469999999
Q ss_pred ccHHHHHhhcCCC-----cc--chHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHH
Q 000134 1974 LTQNMIDGLGITG-----YE--GTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISN 2046 (2096)
Q Consensus 1974 LT~nmv~~mG~~G-----~e--G~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~ 2046 (2096)
||++|+..||..+ .+ +.|+..|..++.+||+|.+.|+++++.++.--+.+... ...+..
T Consensus 258 LT~emv~v~~gg~~~~~~s~~f~~F~~lc~~ay~~lRk~~~~ii~L~~lM~~sgiP~l~~--------------~~~i~~ 323 (366)
T cd05175 258 LTQDFLIVISKGAQECTKTREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPELQS--------------FDDIAY 323 (366)
T ss_pred ecHHHHHHhccCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCC--------------ccHHHH
Confidence 9999999997532 23 58999999999999999999999999998655544321 123567
Q ss_pred HHHHhhccccccCCCCCCCCC---HHHHHHHHHHHHhCc
Q 000134 2047 IEARLQGSVVGVGAAPSLPLA---VEGQARRLIAEAVSH 2082 (2096)
Q Consensus 2047 i~~kL~g~~~~~~~~~~~~ls---v~~qV~~LI~~Atd~ 2082 (2096)
+++|+.= .+| ...+...+|.+|.+.
T Consensus 324 lr~rf~l-----------~~sd~eA~~~f~~~I~~s~~~ 351 (366)
T cd05175 324 IRKTLAL-----------DKTEQEALEYFMKQMNDAHHG 351 (366)
T ss_pred HHHhcCC-----------CCCHHHHHHHHHHHHHHHHhc
Confidence 7777652 223 334567788888653
|
PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=418.81 Aligned_cols=341 Identities=31% Similarity=0.496 Sum_probs=279.5
Q ss_pred hHHHHHHHHhcCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchh
Q 000134 1186 CMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMD 1265 (2096)
Q Consensus 1186 ~~~~vEAAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~e 1265 (2096)
+|+++|||||+|+||.+++++...+.+ +.+..+++++.++++++.+++...|+++|..++.++++.+.+
T Consensus 1 ~~~~~eaaWrl~~Wd~l~~~~~~~~~~-----------~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~ 69 (352)
T PF02259_consen 1 APLAAEAAWRLGDWDLLEEYLSQSNED-----------SPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSE 69 (352)
T ss_pred ChHHHHHHHhcCChhhHHHHHhhccCC-----------ChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 368999999999999999998876542 347889999999999999999999999999999999999999
Q ss_pred hHHhhhHHHHHhhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCC
Q 000134 1266 SYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLG 1345 (2096)
Q Consensus 1266 Sy~r~y~~l~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~ 1345 (2096)
||+++||.+++||+|+||||+.++..+.. ......+.+.+.|+.|++.++++++.|++||++|+++++.....
T Consensus 70 s~~~~y~~l~~lq~L~Elee~~~~~~~~~-------~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~ 142 (352)
T PF02259_consen 70 SYQRAYPSLVKLQQLVELEEIIELKSNLS-------QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLP 142 (352)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHhhc-------ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccch
Confidence 99999999999999999999999874211 11467888999999999999999999999999999999977777
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC------CChHHHHHHHHHHHcCCchHHHHHHHHHhhc-CCcccccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASG------APNVHMEKAKLLWSTRRSDGAIAELQQNLLN-KPVEVVGS 1418 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~------~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~-~~~~~~~~ 1418 (2096)
.+++.+|+++|++|||+|++++|.++|.++..++ .|.+.+|+||++|++|++.+|++.|+..+++ +.......
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 8999999999999999999999999999999877 8999999999999999999999999999883 22211000
Q ss_pred cccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhccchHHHHHHHH
Q 000134 1419 TAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT----GQKQKEDVITLYSRVRELQPMWEKGYFYMA 1494 (2096)
Q Consensus 1419 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~----~~~~~~~i~~~Y~~a~~l~~~weK~~~~la 1494 (2096)
. ...+..... . ........+.........|++++++|+|.+.. +....+++.+.|++|++++|+|+|+||+||
T Consensus 223 ~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a 299 (352)
T PF02259_consen 223 S-NAELKSGLL-E-SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWA 299 (352)
T ss_pred c-HHHHhhccc-c-ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 0 000000000 0 00000001112334568899999999999999 888899999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcchhhhHHHHHH
Q 000134 1495 KYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLT 1552 (2096)
Q Consensus 1495 ~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~~~q~lpRlLt 1552 (2096)
+|+|+++.......... .+....+|+..||.||++|+.+|+++++|++|||||
T Consensus 300 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ai~~y~~al~~~~~~~~~~~~RlLt 352 (352)
T PF02259_consen 300 LFNDKLLESDPREKEES-----SQEDRSEYLEQAIEGYLKALSLGSKYVRQDLPRLLT 352 (352)
T ss_pred HHHHHHHHhhhhccccc-----chhHHHHHHHHHHHHHHHHHhhCCCchHHHhhHhcC
Confidence 99999985433221110 002345799999999999999999999999999986
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=338.70 Aligned_cols=461 Identities=21% Similarity=0.292 Sum_probs=304.2
Q ss_pred HHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhhHhHHHHHHHHHHhhcCCCCCchhhhhhHHhhhcc
Q 000134 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRI 1606 (2096)
Q Consensus 1527 ~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iP~~~wl~~lPQLisRl 1606 (2096)
.|+.-|++|+......-...-.+++-=|=...........++ .-.+..|.......+.....-..+..++||+..+
T Consensus 309 KALtK~L~sv~W~~~qe~kqal~lM~~W~~id~~dalellss----~f~~~sVrayavsrl~~a~deelllYL~qlvqal 384 (843)
T KOG0906|consen 309 KALTKFLRSVNWRDPQEVKQALALMDKWEEIDVEDALELLSS----YFTHPSVRAYAVSRLKGADDEELLLYLLQLVQAL 384 (843)
T ss_pred HHHHHHHHHhhcCChHHHHHHHHHhhccccchhhhhhhhccc----cccCHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 589999999988766433333466666733221100000000 0112334444444555565666777788888877
Q ss_pred ccCc----hH-----------------------------------------HHHHHHHHHHHHHHhchhhH--HHHHHHh
Q 000134 1607 CHQN----EE-----------------------------------------IVRLVKHIITSVLRQYPQQG--LWIMAAV 1639 (2096)
Q Consensus 1607 ~h~~----~~-----------------------------------------v~~~l~~il~kv~~~yPqq~--lw~l~~~ 1639 (2096)
+..+ ++ ..++...++.+...++--.. +|++...
T Consensus 385 ~ye~~~~~p~~~~~~~v~s~~~~si~s~~t~pl~s~ss~~~ts~tke~p~~~s~La~fLi~Ral~n~~l~nflywyl~~e 464 (843)
T KOG0906|consen 385 KYENGQQLPEEGNPVPVVSEREGSIPSVATTPLESLSSRDMTSTTKEAPKAASDLATFLISRALVNPQLANFLYWYLKVE 464 (843)
T ss_pred HHHhhccCCcccCcCcccccccccccccccCccccccCCCccccccccccccchHHHHHHHHHhcCccccceEEEEEEEE
Confidence 7655 11 11356677777776643333 4555444
Q ss_pred hcCCChhHHHHHHHHHHHHH---hcCCCCCchhchHHHHHHHHHHHHHHhhccCCccccccchhHhhHHHHhhccCCccc
Q 000134 1640 SKSTIPSRREAAAEIIQAAK---KGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIM 1716 (2096)
Q Consensus 1640 ~~S~~~~R~~~~~~Il~~~~---~~~~~~~~~~~li~~~~~l~~~Li~l~~~~~~~~~~~~~l~~~f~~l~~~~~~~~i~ 1716 (2096)
..++. -.++...|+.... ...++...+...+.+...++++|.+++........++..-.. .++.++....-+
T Consensus 465 ~Ed~~--~~kry~si~~~f~~~l~K~~d~r~~~~~L~~Q~~lVd~L~~i~~~v~~~~g~~~kK~e---~L~~lL~~~~~~ 539 (843)
T KOG0906|consen 465 IEDTP--YSKRYLSIMSSFLEALSKRPDGRAIRGSLEAQQALVDELRRIMKEVKRGSGRRKKKIE---RLRGLLGDHKHM 539 (843)
T ss_pred ecCCh--HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCchHHHHH---HHHHHHhccccc
Confidence 44332 2223444443332 222222223456677788999999998643221111111111 122221110001
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCCCCcceEeee-cCceEEecCCCcceEEEEEecCCC-eeeEEecCCCcchhhHH
Q 000134 1717 PIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGI-ADEAEILSSLQRPKKIVLLGSDGI-KRPFLCKPKDDLRKDSR 1794 (2096)
Q Consensus 1717 P~~~~l~~~LP~~~~~~~~~~~~~~f~~~~~v~I~~f-~~~v~V~~S~q~PkrI~i~gsDGk-~y~fL~K~~dDlR~D~R 1794 (2096)
|+ .+.. .- |-|..+.++|.++ .++..++.|-..|-+|+|+..+|. .|+.++|.|||||||+.
T Consensus 540 ~l----------~~~~----~i--~lpldp~v~i~~Iip~t~~~FkSsl~Pl~l~fkt~~g~g~y~vIFK~GDDLrQDql 603 (843)
T KOG0906|consen 540 NL----------LDVR----LI--ALPLDPDVLIKGIIPDTASLFKSSLMPLKLTFKTDDGGGKYPVIFKKGDDLRQDQL 603 (843)
T ss_pred cc----------ccce----ee--ccCCCCCceEeeecCchhhhhhhccCceeEEEEecCCCCceeEEEecCcchhHHHH
Confidence 11 0000 01 1223467899998 588999999999999999999998 99999999999999999
Q ss_pred HHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHh
Q 000134 1795 MMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQ 1874 (2096)
Q Consensus 1795 ~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~ 1874 (2096)
+.|+.++||++|++.. -+|.+.+|.|+|+++.-|++|+|++ .++..|+.++.. +...+....
T Consensus 604 V~Qii~lMd~LLkken----lDLkLtpYkVLatg~~eG~vefI~s-~~la~Ils~~~~-------------I~~ylke~~ 665 (843)
T KOG0906|consen 604 VLQIIRLMDRLLKKEN----LDLKLTPYKVLATGPKEGFVEFIPS-KPLARILSEYHS-------------ILMYLKEDR 665 (843)
T ss_pred HHHHHHHHHHHhcccc----ccccceeeEEeccCCCcccEEeecC-CcHHHHHHHHHH-------------HHHHHHhhC
Confidence 9999999999999986 5899999999999999999999995 789999876432 111111100
Q ss_pred cCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeec
Q 000134 1875 GKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDF 1954 (2096)
Q Consensus 1875 ~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF 1954 (2096)
. ++ ..| ...=...+.+|++|||.+|+++||||+||||++|+|+. .+|++|||||
T Consensus 666 p----~e--------------------~ap-~gi~~~v~dnfVkScaGYsVitYILGvGDRhldNLllT-~dGk~FHiDF 719 (843)
T KOG0906|consen 666 P----DE--------------------NAP-FGISPEVMDNFVKSCAGYSVITYILGVGDRHLDNLLLT-KDGKLFHIDF 719 (843)
T ss_pred C----Cc--------------------CCC-CCCChhHHHHHHHhhccceeeeeeecccCCCcCceEEc-cCCcEEEEee
Confidence 0 00 000 01124567899999999999999999999999999998 5999999999
Q ss_pred cccccccCCCCCCCCCCccccHHHHHhhcCCCc--cchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCC
Q 000134 1955 SCLFDKGLLLEKPELVPFRLTQNMIDGLGITGY--EGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSG 2032 (2096)
Q Consensus 1955 ~~~F~kg~~l~~pE~VPFRLT~nmv~~mG~~G~--eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~ 2032 (2096)
|++|++. |+|-..|..|++.|+++||.... ...|+.-|..++..||++...|+++.+++...-+.+...
T Consensus 720 gyIlGRD---PKP~pp~MkL~kemve~mgg~es~~Yq~F~s~c~~Af~~LRRssnlIlnLf~LM~~~~IPDia~------ 790 (843)
T KOG0906|consen 720 GYILGRD---PKPFPPPMKLAKEMVEGMGGAESKQYQEFRSYCYEAFLILRRSSNLILNLFSLMADANIPDIAF------ 790 (843)
T ss_pred eeeccCC---CCCCCCccccCHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCceee------
Confidence 9999999 67778899999999999996543 248999999999999999999999999998665544322
Q ss_pred ccccchhHHHHHHHHHHHhhccccccCCCCCCCCCH---HHHHHHHHHHHhCc
Q 000134 2033 VEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAV---EGQARRLIAEAVSH 2082 (2096)
Q Consensus 2033 ~~~~n~~a~~~l~~i~~kL~g~~~~~~~~~~~~lsv---~~qV~~LI~~Atd~ 2082 (2096)
+..+++.++++|++= .+|- -.+.+.||++|.+.
T Consensus 791 ------dp~k~I~kvqeRfrL-----------dmSde~A~~~fq~lI~~SV~A 826 (843)
T KOG0906|consen 791 ------DPNKAILKVQERFRL-----------DMSDEAATKHFQKLINESVNA 826 (843)
T ss_pred ------CcchhhHHHHHHHcc-----------cccHHHHHHHHHHHHHHHHHH
Confidence 124678888888863 2232 23566677776653
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=354.59 Aligned_cols=380 Identities=21% Similarity=0.343 Sum_probs=286.2
Q ss_pred HHHHHHHhhcCCCCCchhhhhhHHhhhccccCchHHHHHHHHHHHHHHH--hchhhHHHHHHHhhcC-CChhHHHHHHHH
Q 000134 1578 KVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLR--QYPQQGLWIMAAVSKS-TIPSRREAAAEI 1654 (2096)
Q Consensus 1578 ~v~~~~~~~~~~iP~~~wl~~lPQLisRl~h~~~~v~~~l~~il~kv~~--~yPqq~lw~l~~~~~S-~~~~R~~~~~~I 1654 (2096)
+|.+..-.-+.+++....+..|||+|..+.+.--.-..+++-||.+-.. .+.|..+|.+.-..+. ....|. +.+
T Consensus 905 eVR~~AVqwi~~ls~DeL~d~LPQlVQALK~E~yl~S~Lv~FLL~rsl~sl~~ah~lYWlLk~~l~d~qfs~rY---q~l 981 (1639)
T KOG0905|consen 905 EVRAHAVQWIARLSNDELLDYLPQLVQALKFELYLKSALVQFLLSRSLVSLQFAHELYWLLKDALDDSQFSLRY---QNL 981 (1639)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhcchHHHHHHHHHHhhccccceeehHH---HHH
Confidence 4555555678899999999999999999988533334455566655543 4678899999765543 344444 555
Q ss_pred HHHHHhcCCCCCchhchHHHHHHHHHHHHHHhhcc--CCccccccchhHhhHHHHhhccCCcccccccccccccCCCCCC
Q 000134 1655 IQAAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHA--GQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDAN 1732 (2096)
Q Consensus 1655 l~~~~~~~~~~~~~~~li~~~~~l~~~Li~l~~~~--~~~~~~~~~l~~~f~~l~~~~~~~~i~P~~~~l~~~LP~~~~~ 1732 (2096)
+.++.... +.+..+-+.-..+|+.+|-.++... .....|...+......++..+ +.+-+..||-
T Consensus 982 l~aLl~~~--gk~L~~ef~~Q~~Lv~~L~~iae~Vr~as~s~Rq~vL~~~l~~v~~ff--------~~n~tcrLPL---- 1047 (1639)
T KOG0905|consen 982 LAALLDCC--GKNLREEFKKQHKLVNELGSIAEDVRSASGSARQHVLRTGLGRVDSFF--------LQNNTCRLPL---- 1047 (1639)
T ss_pred HHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhHHHHHHHH--------HhCCceeccc----
Confidence 55554333 1222333444566777777776432 112222223333333333321 1222333442
Q ss_pred CCCCCCCCCCCCCCcceEeeec-CceEEecCCCcceEEEEEe--cCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccC
Q 000134 1733 LTESPSSDIFSASDLPTISGIA-DEAEILSSLQRPKKIVLLG--SDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKY 1809 (2096)
Q Consensus 1733 ~~~~~~~~~f~~~~~v~I~~f~-~~v~V~~S~q~PkrI~i~g--sDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~ 1809 (2096)
.+...+.|+. ++..+++|...|-||+|+| -+|..++.++|.+||||||+.+||++++||++|.++
T Consensus 1048 ------------~Pal~vkGv~i~~CSyFnSNA~PLKitFvnadp~geni~iIfK~gDDLRQDml~lQmI~iMdkIWl~e 1115 (1639)
T KOG0905|consen 1048 ------------CPALDVKGVRIRECSYFNSNALPLKITFVNADPLGENISIIFKCGDDLRQDMLVLQMIRIMDKIWLQE 1115 (1639)
T ss_pred ------------CchheeccccccccccccCCCcceEEEEecCCCccccceeeeecCchHHHHHHHHHHHHHHHHHHHhc
Confidence 2223455664 5688899999999999999 679999999999999999999999999999999998
Q ss_pred CcccCCCeeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcC
Q 000134 1810 PESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILP 1889 (2096)
Q Consensus 1810 ~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 1889 (2096)
. -+|.+.+|.++|.+-+.|++|.|||+.||+.|-.+ +.-.|.+ |+
T Consensus 1116 g----LDlrMViFrc~stG~~rgMvElVp~a~TLrKIQve-~GltGsf--------------------------kD---- 1160 (1639)
T KOG0905|consen 1116 G----LDLRMVIFRCLSTGYDRGMVELVPNAETLRKIQVE-EGLTGSF--------------------------KD---- 1160 (1639)
T ss_pred C----CceeEEEEEeecccccccceeecccHHHHHHHHHH-hcccccc--------------------------cc----
Confidence 5 58999999999999999999999999999998543 1111211 11
Q ss_pred CCchHHHHHHHhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCC--CC
Q 000134 1890 MFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLE--KP 1967 (2096)
Q Consensus 1890 ~~~pvl~~wf~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~--~p 1967 (2096)
..+.+|+.+..|++.+|-.|-.||+.|||.||+++||||++|||.+|||+. +||++||||||-.++....|. +.
T Consensus 1161 ---~pla~WL~KhNp~e~eYekA~eNFiySCAG~cVaTYVLGIcDRHNDNIMl~-~sGHmFHIDFGKFLGhaQMfg~fKR 1236 (1639)
T KOG0905|consen 1161 ---RPLAKWLMKHNPSEFEYEKAVENFIYSCAGWCVATYVLGICDRHNDNIMLT-KSGHMFHIDFGKFLGHAQMFGGFKR 1236 (1639)
T ss_pred ---chHHHHHHhcCCCHHHHHHHHHHHHHhcccceeeeEeeecccccCCceEEe-ccCcEEEEehhhhcchHHHhccccc
Confidence 146789999999999999999999999999999999999999999999997 699999999999998876653 47
Q ss_pred CCCCccccHHHHHhhcCCCc----cchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccc
Q 000134 1968 ELVPFRLTQNMIDGLGITGY----EGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWT 2025 (2096)
Q Consensus 1968 E~VPFRLT~nmv~~mG~~G~----eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~ 2025 (2096)
.++||-+|.+|..++...+- ...|...|+.++..+|+|.+.|+++|+.++.-.+.+-+
T Consensus 1237 DRaPFVfTSdMayvINgG~kpt~~fq~FVDlCCrAyNiiRK~t~lllnlL~lM~~agiPeln 1298 (1639)
T KOG0905|consen 1237 DRAPFVFTSDMAYVINGGDKPTQRFQDFVDLCCRAYNIIRKNTNLLLNLLRLMACAGIPELN 1298 (1639)
T ss_pred ccCCeEEeccchhhhcCCCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCcc
Confidence 89999999999999875443 45899999999999999999999999999987765543
|
|
| >KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=330.36 Aligned_cols=387 Identities=19% Similarity=0.282 Sum_probs=280.6
Q ss_pred HHHHHHhhcCCCCCchhhhhhHHhhhccccCchHHHHHHHHHHHHHHHhc--hhhHHHHHHHhhcCCChhHHHHHHHHHH
Q 000134 1579 VMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQY--PQQGLWIMAAVSKSTIPSRREAAAEIIQ 1656 (2096)
Q Consensus 1579 v~~~~~~~~~~iP~~~wl~~lPQLisRl~h~~~~v~~~l~~il~kv~~~y--Pqq~lw~l~~~~~S~~~~R~~~~~~Il~ 1656 (2096)
|.++.-+++..+....++-++-|||+.+.+..-.-..+.+-++.|...++ -|..+|++.+-+... .-..|-.-|++
T Consensus 627 VR~fAV~~L~~Lsdd~l~~YLLqLVQalKyEpylds~L~rFLL~RAL~N~RIGHflFWhLRSEm~~~--~~~~RfgllLE 704 (1076)
T KOG0904|consen 627 VRAFAVRCLEQLSDDDLLQYLLQLVQALKYEPYLDSALVRFLLKRALRNQRIGHFLFWHLRSEMAQP--SVQQRFGLLLE 704 (1076)
T ss_pred HHHHHHHHHHhcChhHHHHHHHHHHHHHhccchhHhHHHHHHHHHHhhccccchhhhhhHHHHhccH--HHHHHHHHHHH
Confidence 44454566788999999999999999999976655778888888888775 789999998876433 44445566888
Q ss_pred HHHhcCCCCCchhchHHHHHHHHHHHHHHhhccCCccccccchhHhhHHHHhhccCCcccccccccccccCCCCCCCCCC
Q 000134 1657 AAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTES 1736 (2096)
Q Consensus 1657 ~~~~~~~~~~~~~~li~~~~~l~~~Li~l~~~~~~~~~~~~~l~~~f~~l~~~~~~~~i~P~~~~l~~~LP~~~~~~~~~ 1736 (2096)
...+.+.. .+ +.+...-...+.|.++.-..+. ++.+.+.+..-..++.++...-... .+. ++.
T Consensus 705 aYlRGc~~--hl-k~l~kQve~l~kLk~lt~~iK~-~~~K~~~~~~~~~l~~~lr~~~~~~--------~lq---~l~-- 767 (1076)
T KOG0904|consen 705 AYLRGCTH--HL-KVLTKQVEALEKLKKLTDLIKL-SAEKEDVSQVKEQLKLCLRQLANSE--------ALQ---NLQ-- 767 (1076)
T ss_pred HHHhccHH--HH-HHHHHHHHHHHHHHHHHHHHhh-cCccccHHHHHHHHHHHHHhHHHHH--------HHH---hcc--
Confidence 77665421 11 2333333344555554322111 1111111111122222211100000 000 000
Q ss_pred CCCCCCCCCCcceEeee-cCceEEecCCCcceEEEEEe----cCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCc
Q 000134 1737 PSSDIFSASDLPTISGI-ADEAEILSSLQRPKKIVLLG----SDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPE 1811 (2096)
Q Consensus 1737 ~~~~~f~~~~~v~I~~f-~~~v~V~~S~q~PkrI~i~g----sDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~e 1811 (2096)
.|. .+....... -++..||.|+.||-.+.+-. +++ .-..++|.|||||||..+.|+.++|+.+|+...
T Consensus 768 ---sPL--dP~~~lgel~iekckvM~SkkrPLwl~~~Np~~~s~~-~v~iIFKNGDDLRQDMLtLQmLriMd~iWk~~g- 840 (1076)
T KOG0904|consen 768 ---SPL--DPSLKLGELIIEKCKVMDSKKRPLWLVFENPDAGSNL-SVGIIFKNGDDLRQDMLTLQMLRIMDNIWKTEG- 840 (1076)
T ss_pred ---CCC--ChhhhhcchhhhhhhhhhccCCceEEEecCCCcccCC-ceeEEEcCCchHHHHHHHHHHHHHHHHHHHhcC-
Confidence 011 122233333 47899999999999999843 334 567889999999999999999999999999886
Q ss_pred ccCCCeeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCC
Q 000134 1812 SRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMF 1891 (2096)
Q Consensus 1812 trrR~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 1891 (2096)
-+|.+.+|.++|++...||||-|+|+.|+.+|-.+ .|.. ... .+--
T Consensus 841 ---lDlrm~PYgcls~Gd~iGlIEVV~~s~TIa~IQ~~----~g~~--------------------~at-------~afn 886 (1076)
T KOG0904|consen 841 ---LDLRMLPYGCLSTGDRIGLIEVVRNSETIANIQLN----TGNM--------------------AAT-------AAFN 886 (1076)
T ss_pred ---CCeeccccccccccceeeeEEEecCchhhhhhhhc----cccc--------------------eee-------ccCC
Confidence 58999999999999999999999999999888422 1111 000 0111
Q ss_pred chHHHHHHHhhCCChhHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCC-C-CCCCC
Q 000134 1892 PPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLL-L-EKPEL 1969 (2096)
Q Consensus 1892 ~pvl~~wf~~~f~~p~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~-l-~~pE~ 1969 (2096)
+..|.+|+.+..|....+=++-..||.|||.+|+++||||+||||.+|||+. .||++||||||.++|.+++ | -..|+
T Consensus 887 ~~~L~~WLKekNp~e~kld~AIe~Ft~SCAGYcVATyVLGIgDRHsDNIMvk-e~GqlFHIDFGHiLGh~KsKlGi~RER 965 (1076)
T KOG0904|consen 887 KDALLNWLKEKNPGEDKLDAAIEEFTLSCAGYCVATYVLGIGDRHSDNIMVK-ETGQLFHIDFGHILGHFKSKLGINRER 965 (1076)
T ss_pred HHHHHHHHhhcCchHHHHHHHHHHHHHhhccceeeeeeecccccccCceEEe-ccCcEEEEEhhhhhccchhhcCccccc
Confidence 3478999999888877788999999999999999999999999999999997 6999999999999998764 4 45899
Q ss_pred CCccccHHHHHhhcCCCc------cchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCccccc
Q 000134 1970 VPFRLTQNMIDGLGITGY------EGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTK 2026 (2096)
Q Consensus 1970 VPFRLT~nmv~~mG~~G~------eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~ 2026 (2096)
|||-||++++..|+-.+. .+.|+.+|+.+.-+||+|...++++...++--.+.+.+.
T Consensus 966 vPFvLT~dFl~VI~~G~~~~~~~eF~kFq~~C~~AYl~lr~H~nLfi~LFsmMl~~glPELss 1028 (1076)
T KOG0904|consen 966 VPFVLTYDFLHVIQKGKTKNSEKEFQKFQELCEKAYLALRRHGNLFISLFSMMLGTGLPELSS 1028 (1076)
T ss_pred CceEeecceeeeecccCCCCchhHHHHHHHHHHHHHHHHHHccccHHHHHHHHHhcCCCcccc
Confidence 999999999999986543 257999999999999999999999999999888877654
|
|
| >KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-28 Score=313.00 Aligned_cols=377 Identities=18% Similarity=0.300 Sum_probs=253.1
Q ss_pred HHHHHHhhcCCCCCchhhhhhHHhhhccccCchHHHHHHHHHHHHHHHhchhhHHHHHHHhhcCCChhHH-HHHHHHH--
Q 000134 1579 VMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSRR-EAAAEII-- 1655 (2096)
Q Consensus 1579 v~~~~~~~~~~iP~~~wl~~lPQLisRl~h~~~~v~~~l~~il~kv~~~yPqq~lw~l~~~~~S~~~~R~-~~~~~Il-- 1655 (2096)
+...--+.+...|+..-+..+||||+.+..+.....+-...=...-.+-+.||.+|.|.+...-+...-. ....+|+
T Consensus 1352 ~~~~~~~~l~s~~~~~~~fyvPQiVq~lryDkm~~v~~~il~~a~~s~l~aHqliWnm~~n~y~d~~~~~~~~~~~~l~~ 1431 (1803)
T KOG0902|consen 1352 LMQYAVRVLRSYSPNEMLFYVPQIVQALRYDKMGYVEEYILWAAGKSQLFAHQLIWNMKANLYVDEEAIVKADIGEILDR 1431 (1803)
T ss_pred HHHHHHHHHHhCChhhhhhhhHHHHHHHhhcchhHHHHHHHHHhhhhHHHHHHHHHHhhhhhccccccccchhHHHHHHH
Confidence 3344444577889999999999999999987643322222222233455899999999875432211111 2334444
Q ss_pred --HHHHhcCCCCCchhchHHHHHHHHHHHHHHhhc----cCCccccccchhHhhHHHHhhccCCcccccccccc-cccCC
Q 000134 1656 --QAAKKGSAHGNSANNLFGQFTSLIDHLIKLCFH----AGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLT-VTLPP 1728 (2096)
Q Consensus 1656 --~~~~~~~~~~~~~~~li~~~~~l~~~Li~l~~~----~~~~~~~~~~l~~~f~~l~~~~~~~~i~P~~~~l~-~~LP~ 1728 (2096)
+++....+.. ...++..--.+++++..+... +.. ..++-.+.++.+.++ +.| ++++|...... +.+.-
T Consensus 1432 ~~e~i~~~~s~~--a~df~~rEf~ff~~vT~ISg~l~P~~k~-~erk~~i~~~l~kik-~~~-~~YlPs~P~~~v~~i~~ 1506 (1803)
T KOG0902|consen 1432 VREEITGSLSGP--ARDFYEREFDFFNKVTSISGKLKPYPKG-DERKKAILEELSKIK-VQP-GCYLPSNPDAVVLDIDY 1506 (1803)
T ss_pred HHHHHHhcCCch--hhHHHHHHhHHHHHhhhccceeecCCCc-HHHHHHHHHHHHhhc-ccC-ceecCCCCCceEEEeec
Confidence 4444333322 234555545666666665421 111 112222233333332 222 66666544322 12222
Q ss_pred CCCCCCCCCCCCCCCCCCcceEeeecCceEEecCCCcceEEEEEecCC-------CeeeEEecCCCcchhhHHHHHHHHH
Q 000134 1729 QDANLTESPSSDIFSASDLPTISGIADEAEILSSLQRPKKIVLLGSDG-------IKRPFLCKPKDDLRKDSRMMEFTAM 1801 (2096)
Q Consensus 1729 ~~~~~~~~~~~~~f~~~~~v~I~~f~~~v~V~~S~q~PkrI~i~gsDG-------k~y~fL~K~~dDlR~D~R~mQl~~l 1801 (2096)
.++.+-.+....|| ...|. | ||+.--|-.+ +...-++|.|||+|||....|++.|
T Consensus 1507 ~Sg~plQS~aK~Pf-------matF~----v-------kr~~~~g~~~~~k~~~~~WQa~IFKvGDDcRQD~LaLQiisl 1568 (1803)
T KOG0902|consen 1507 KSGTPLQSAAKAPF-------MATFK----V-------KRLEKDGLQCRSKSQKISWQAAIFKVGDDCRQDMLALQIISL 1568 (1803)
T ss_pred CCCccchhhccCCe-------eEEEe----e-------eeccCCcccccccccchhhhhhhhhcCchHHHHHHHHHHHHH
Confidence 22222222222233 33331 1 1111111111 2234678999999999999999999
Q ss_pred HHHHhccCCcccCCCeeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHH
Q 000134 1802 INRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDE 1881 (2096)
Q Consensus 1802 iN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 1881 (2096)
+..+++.-. -++++.+|.|+|.+|.||+||.|||+.+-.++- ++..
T Consensus 1569 f~~if~~~g----Ld~~lfPYrV~aT~pGcGVIEviPn~~SRdqlG-----------r~t~------------------- 1614 (1803)
T KOG0902|consen 1569 FKNIFQLVG----LDLYLFPYRVVATAPGCGVIEVIPNSKSRDQLG-----------RETD------------------- 1614 (1803)
T ss_pred HHHHHHHcC----CceEEeeeeeeccCCCCceEEeCCCCccHHHhc-----------cccc-------------------
Confidence 999998865 589999999999999999999999998754441 1101
Q ss_pred HHHHhhcCCCchHHHHHHHhhCCCh--hHHHHHHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeecccccc
Q 000134 1882 MLKTKILPMFPPVFHKWFLTTFSEP--AAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFD 1959 (2096)
Q Consensus 1882 ~~~~~i~~~~~pvl~~wf~~~f~~p--~~w~~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~ 1959 (2096)
.-|++||...|++- ..|-++|.||.+|+|.+|+++|.|.+.|||.+||||| .-|+++|||||++|+
T Consensus 1615 -----------~glyeyF~~~~G~~~s~~fq~Ar~NF~~S~A~Ysv~s~lLq~KDRHNGNim~D-d~G~~iHIDFGf~~e 1682 (1803)
T KOG0902|consen 1615 -----------NGLYEYFTRKYGDESSEAFQTARYNFVRSMAGYSVLSYLLQIKDRHNGNIMID-DQGHIIHIDFGFMFE 1682 (1803)
T ss_pred -----------ccHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcccccccCCceeEc-cCCCEEEEeeeeEEe
Confidence 13567888888754 5799999999999999999999999999999999999 699999999999999
Q ss_pred ccCCC-CCCCCCCccccHHHHHhhcCCCc---cchHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccc
Q 000134 1960 KGLLL-EKPELVPFRLTQNMIDGLGITGY---EGTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWT 2025 (2096)
Q Consensus 1960 kg~~l-~~pE~VPFRLT~nmv~~mG~~G~---eG~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~ 2025 (2096)
..+.. -.-|. ||+||.+|+..||+.-- ...|...|..++-+.|.+.+.|.+.++.|+...|.++.
T Consensus 1683 ~sPGgnl~fE~-~fKLt~Em~~~mgG~~~~~~f~~f~elcVk~yLA~R~~~~~iv~~V~~mldsgLPCfr 1751 (1803)
T KOG0902|consen 1683 SSPGGNLGFEP-PFKLTKEMVMLMGGKMEAKPFKWFQELCVKGYLAARPYMDAIVSLVQSMLDSGLPCFR 1751 (1803)
T ss_pred cCCCCccCcCC-CccchHHHHHHhCCCCCCCcHHHHHHHHHHHHHhhchhHHHHHHHHHHHHhcCCCccC
Confidence 87765 34566 99999999999993321 12688999999999999999999999999999999984
|
|
| >KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.6e-25 Score=270.31 Aligned_cols=249 Identities=20% Similarity=0.356 Sum_probs=199.6
Q ss_pred eEEEEEec--CCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcceeEecCCCccHH
Q 000134 1767 KKIVLLGS--DGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLR 1844 (2096)
Q Consensus 1767 krI~i~gs--DGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~tl~ 1844 (2096)
|+=+..|. ++...+.+||.||||||+....|++.-+-.+|.+... .|++|+|.|+-++.+.||||.|+|+.+++
T Consensus 574 RktS~Yg~~pnWdL~SVIVKtGdDLrQE~fA~Qli~~f~~IW~Eegv----plWlRpykIlvtss~sGLIEtI~da~SIH 649 (847)
T KOG0903|consen 574 RKTSPYGHLPNWDLRSVIVKTGDDLRQELFAYQLISAFKDIWQEEGV----PLWLRPYKILVTSSDSGLIETIVDAMSIH 649 (847)
T ss_pred hccCccccCCCcceEEEeeecCchHHHHHHHHHHHHHHHHHHHHcCC----cceeeeEEEEEEecCccceeeccchhhHH
Confidence 34444443 5677889999999999999999999999999998864 89999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhC-CChhHHHHHHHHHHHHhhHH
Q 000134 1845 NILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTF-SEPAAWFRARVAYAHTTAVW 1923 (2096)
Q Consensus 1845 ~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f-~~p~~w~~~R~~ft~S~Av~ 1923 (2096)
+|-..+ + +.- .|.+||...+ ++...|-.+.+||..|+|.|
T Consensus 650 sIKk~l-------------~--------------~~~------------~l~~F~~~~g~~NS~~yk~AQrNFvqSlagY 690 (847)
T KOG0903|consen 650 SIKKRL-------------P--------------NLA------------SLRHFFAAFGKPNSEKYKSAQRNFVQSLAGY 690 (847)
T ss_pred HHHHhc-------------c--------------hhh------------hHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 984331 0 000 1223333333 45578999999999999999
Q ss_pred HHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCCCCCCCCccccHHHHHhhcCCCccc----hHHHHHHHHH
Q 000134 1924 SMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEG----TFLRVCEITL 1999 (2096)
Q Consensus 1924 S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~~pE~VPFRLT~nmv~~mG~~G~eG----~F~~~~~~t~ 1999 (2096)
|+|+|+|.+.|||.+||||| ..|+|+|||||+++...+...--|..||+||.++++.|| |++| -|+..|-..+
T Consensus 691 SLvcYlLQvKDRHNGNILiD-~EGHIIHIDFGFmLsnsPgnvgFEsAPFKLT~EylEvmg--G~~~d~FdyfK~L~l~gf 767 (847)
T KOG0903|consen 691 SLVCYLLQVKDRHNGNILID-EEGHIIHIDFGFMLSNSPGNVGFESAPFKLTTEYLEVMG--GLDSDMFDYFKSLMLQGF 767 (847)
T ss_pred HHHHHhhhcccccCCceEec-CCCCEEEEeeeeEecCCCCCcccccCchhhHHHHHHHhc--CCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999 599999999999999998887789999999999999999 8888 6899999999
Q ss_pred HHHHhChhhHHHHHHHHhcCCC-cccccccCCCCccccchhHHHHHHHHHHHhhccccccCCCCCCCCCHHHHHHHHHHH
Q 000134 2000 SVLRTHRETLMSVLETFIHDPL-VEWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAE 2078 (2096)
Q Consensus 2000 ~~LR~~~~~L~~iLe~fl~Dpl-~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g~~~~~~~~~~~~lsv~~qV~~LI~~ 2078 (2096)
..+|+|.+.|..+.|++-.+-- .++.. ..+.+.++++|++=-+. .--++..|..||+-
T Consensus 768 ~a~RKhadrIv~lvEiMq~~S~~pCF~a-------------G~~Ti~nL~~RFhLslT--------Eeq~~~lV~~LI~k 826 (847)
T KOG0903|consen 768 MALRKHADRIVLLVEIMQDGSGMPCFRA-------------GERTIQNLRQRFHLSLT--------EEQCQDLVLSLISK 826 (847)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCccccc-------------ChHHHHHHHHHhccccc--------HHHHHHHHHHHHhh
Confidence 9999999999999999876432 22221 13678888898862211 01244556666666
Q ss_pred HhCc
Q 000134 2079 AVSH 2082 (2096)
Q Consensus 2079 Atd~ 2082 (2096)
+.+.
T Consensus 827 S~~S 830 (847)
T KOG0903|consen 827 SLDS 830 (847)
T ss_pred cccc
Confidence 6543
|
|
| >smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-24 Score=219.51 Aligned_cols=103 Identities=28% Similarity=0.575 Sum_probs=98.6
Q ss_pred hhhhhHHHHHHHHHHhhhhhcCCC---ChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCCCcchhhhHHHHH
Q 000134 488 LPGFLRNHFVGLLNSIDRKMLHAE---DLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHF 564 (2096)
Q Consensus 488 ~~~fl~~~~LGil~~~~~~l~~~~---~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~ 564 (2096)
+++||++|||||++.|++++.+.. +..+|+++|+||++||+++|+||++++||||||||+||+.|+|++.|++||+.
T Consensus 1 ~~~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~~eL~~~al~~W~~ 80 (107)
T smart00802 1 LADFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEIPELRSLALRCWHV 80 (107)
T ss_pred ChHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 479999999999999999998865 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCcchhhHHHHHHHHhhhccc
Q 000134 565 FIEQLSRVSPSSTKHVISQVFAALIPFLE 593 (2096)
Q Consensus 565 fv~~L~~~~~~~l~~ll~~i~~~lip~~~ 593 (2096)
||++|++ ++++++++++|++++|+|+
T Consensus 81 ~i~~L~~---~~l~~ll~~~~~~i~~~~~ 106 (107)
T smart00802 81 LIKTLKE---EELGPLLDQIFAAILPLWP 106 (107)
T ss_pred HHHhCCH---HHHHHHHHHHHHHHHHhcc
Confidence 9999975 7999999999999999997
|
Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules. |
| >PTZ00303 phosphatidylinositol kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-23 Score=249.24 Aligned_cols=163 Identities=22% Similarity=0.401 Sum_probs=136.2
Q ss_pred cceEEEEEecCCCe-----------eeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcce
Q 000134 1765 RPKKIVLLGSDGIK-----------RPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGM 1833 (2096)
Q Consensus 1765 ~PkrI~i~gsDGk~-----------y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GL 1833 (2096)
+|.-+-+...+|.. |.||+|. +|||||+.+.|++++|+++|+++. .+|.+.+|.|+|++.+.|+
T Consensus 1027 ~pv~~p~~~~~gvs~~~~~~~~~q~~~iIyK~-gDLRQDQLVLQmIrLMDrLLKkEn----LDLKLTPYRVLATG~dsGL 1101 (1374)
T PTZ00303 1027 APVTSPVTAVNGVSPESLHDSLPQECMFLYKR-ENVERDQLMCISSRLLQMLLSSEI----GNAEMLDYSVLPLSCDSGL 1101 (1374)
T ss_pred cceeeeeeccCCcCccccccccchheeEEEec-CcHHHHHHHHHHHHHHHHHHHhcC----CCccccceEEEeccCCccc
Confidence 77788888889988 9999995 699999999999999999999986 5899999999999999999
Q ss_pred eEecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHHHHHH
Q 000134 1834 VEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRAR 1913 (2096)
Q Consensus 1834 IEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w~~~R 1913 (2096)
||.|++. ++.+|... .+.+||.. .++ ...
T Consensus 1102 IEfVps~-tLAsI~~~--------------------------------------------~Il~YLr~--~~t----~~~ 1130 (1374)
T PTZ00303 1102 IEKAEGR-ELSNLDNM--------------------------------------------DIASYVLY--RGT----RSC 1130 (1374)
T ss_pred EEEecch-HHHHhhhh--------------------------------------------HHHHHHHh--cCc----HHH
Confidence 9999974 56555321 01123321 222 125
Q ss_pred HHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCCCCCCCCccccHHHHHhhcC
Q 000134 1914 VAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGI 1984 (2096)
Q Consensus 1914 ~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~~pE~VPFRLT~nmv~~mG~ 1984 (2096)
.+|++|+|.+|+++||||+||||.+||||+ .+|+++|||||++|+....-+++-.-|-|+-..|..++|.
T Consensus 1131 ~NFi~S~AGYsViTYILgIgDRHngNILId-~dGhLfHIDFGFILg~rtfkeKl~~s~vR~D~~l~eav~~ 1200 (1374)
T PTZ00303 1131 INFLASAKLFLLLNYIFSIGDRHKGNVLIG-TNGALLHIDFRFIFSEKTFVEKLARSTVRIDDAFLAAVEQ 1200 (1374)
T ss_pred HHHHHHHHHHHHHHHHhccCcccCCceeEc-CCCCEEEEecceeecCchhhhccCCCceehhHHHHHHHHH
Confidence 799999999999999999999999999999 5999999999999998765566777899999999887654
|
|
| >PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-23 Score=210.75 Aligned_cols=103 Identities=30% Similarity=0.541 Sum_probs=98.2
Q ss_pred hhhhhHHHHHHHHHHhhhhhcC---CCChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCCCcchhhhHHHHH
Q 000134 488 LPGFLRNHFVGLLNSIDRKMLH---AEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHF 564 (2096)
Q Consensus 488 ~~~fl~~~~LGil~~~~~~l~~---~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~ 564 (2096)
+++||++|||||+++|++++.+ +.+..+|+++|+||++||+++|+||++++||||||||+||+.++|++.|++||++
T Consensus 1 ~~~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~~l~~~al~~W~~ 80 (107)
T PF08064_consen 1 IADFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIPELREEALSCWNC 80 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence 4799999999999999999987 5678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCcchhhHHHHHHHHhhhccc
Q 000134 565 FIEQLSRVSPSSTKHVISQVFAALIPFLE 593 (2096)
Q Consensus 565 fv~~L~~~~~~~l~~ll~~i~~~lip~~~ 593 (2096)
||++|++ ++|+|++++|+++++|+|+
T Consensus 81 fi~~L~~---~~l~~ll~~~~~~l~~~~~ 106 (107)
T PF08064_consen 81 FIKTLDE---EDLGPLLDQIFAILLPLWD 106 (107)
T ss_pred HHHHCCH---HHHHHHHHHHHHHHHHhcc
Confidence 9999964 8999999999999999997
|
; GO: 0004674 protein serine/threonine kinase activity |
| >PF02260 FATC: FATC domain; InterPro: IPR003152 The FATC domain is found at the C-terminal end of the PIK-related kinases | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-12 Score=104.81 Aligned_cols=32 Identities=56% Similarity=1.085 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHhCcchhhhcCCcccCCC
Q 000134 2065 PLAVEGQARRLIAEAVSHKNLGKMYIWWMPWF 2096 (2096)
Q Consensus 2065 ~lsv~~qV~~LI~~Atd~~nL~~My~gW~Pwl 2096 (2096)
++||++||++||++|||++|||+||+||+|||
T Consensus 2 ~lsv~~qV~~LI~~At~~~nLa~my~GW~pw~ 33 (33)
T PF02260_consen 2 PLSVEQQVDELISEATDPENLARMYIGWMPWW 33 (33)
T ss_dssp -S-STHHHHHHHHHHHHHHHHHHHCTSS-TT-
T ss_pred CCCHHHHHHHHHHHHcCHHHHHHHhcchhccC
Confidence 78999999999999999999999999999997
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding; PDB: 2KIT_A 1W1N_A 2KIO_A. |
| >COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.6e-06 Score=123.03 Aligned_cols=563 Identities=13% Similarity=0.068 Sum_probs=313.6
Q ss_pred CCHHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhcc-CChhH
Q 000134 1041 IPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKS-LSLQD 1119 (2096)
Q Consensus 1041 Ip~~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~-~sl~~ 1119 (2096)
+|...+....-.|..++.++++.|.++-... ....++.+..+..++.+.|...|+...... ...+.
T Consensus 1019 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~si~t~ls~~~~~~~~~~~~~~~~~~~~~~~~~l 1085 (2105)
T COG5032 1019 LPSLSIGFYESLCSFLAKLLHDEELYFFPLL-------------FVSSLETLLSVNYHINQLDLRPNILKHFGSFVRFQL 1085 (2105)
T ss_pred chhhhhhHHHHHHHHHHHHhHHHHHHhcccc-------------hHHHHHHHHhhhhhhhhhhhccCcchhhhhhhHHhh
Confidence 5555555788899999999999999875321 135678888888889999888875333221 11222
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHh--hhhhccChhhhhhHhHHHHHHHHhcC
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHV--DGLISRIPQYKKTWCMQGVQAAWRLG 1197 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~--~gl~~~~p~~~~~~~~~~vEAAWrlg 1197 (2096)
+-..+++.++|.+++.-|...............+.++|....|.|+.....+ ++.....+.. .-..+...-|+|-.|
T Consensus 1086 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~~~~~~~r-~~~~~~~~~~~~~~~ 1164 (2105)
T COG5032 1086 KPHLVKYLQRWYEALNRYFELLSKGDRLFAISFTKLRNVDALGKLELYSSLAEIDMFLSLHRRR-KLLETLVATAYEQVG 1164 (2105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhhhhhhHHHHHHHHHHHHHHhhhhccCcch-hhhhHHHHHHHHHHH
Confidence 2678899999999999999877765355666789999999999998754433 3333333211 223345667899999
Q ss_pred ChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHH-HHHHHHhhhhhhcc-chhhHHhhhHHHH
Q 000134 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKI-GVSKQVLIAPLAAA-GMDSYTRAYPFIV 1275 (2096)
Q Consensus 1198 ~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i-~~aR~~l~~~Lsa~-~~eSy~r~y~~l~ 1275 (2096)
.|+....+.+.+... ..+..|...+ .......++........ ..++..+..++... ..++|.+++-...
T Consensus 1165 ~~~~~q~~~e~~~~k-------~~~~~~~~s~--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~i~~~~~w~~a~~~~~ 1235 (2105)
T COG5032 1165 EWYKAQQLYEVAQRK-------ARSKEFPFSL--QYLYWHINDIDCADKLQSVLAELSLVTGISELLLEESWRRALFSNI 1235 (2105)
T ss_pred hHHHHHHHHHHHhhh-------cccccCchhh--HHHHHcccchhhHhhhhhhhhhcccccchhhhccchhHHHHHhhhH
Confidence 999998887765421 0222333221 23344455555444443 34566677777776 4569999998889
Q ss_pred HhhhhhHHHHHHHhhhccccccccCCCChHH--HHHHHHHHHHHhhh---ccCChhhhhhHHHHHHhhcCcCCCCchhHH
Q 000134 1276 KLHLLQELEDFHAILVNDSFLEKSFLPSDLK--FSKLMANWENRLKY---TQPSLWAREPLLAFRRMVFGASGLGAEVGN 1350 (2096)
Q Consensus 1276 kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~--~~~l~~~W~~RL~~---~~~~~~~~e~iLslRr~vl~~~~~~~~~~~ 1350 (2096)
+.....|++++........ .....- .....+.|+.+++. +...+..+.-....+-.+..+. +..+
T Consensus 1236 ~~~~~~~~~e~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~ 1305 (2105)
T COG5032 1236 KDSLESELEEIIDGMYKSN------EDFGALMLLSLSAELWDKILEGRSSCSKSIKLSLNIWLDLSIVVSPK----DEPE 1305 (2105)
T ss_pred HhhhhhhhhHHhhhhhhcc------cchHHHHHHHHHHhccchhhcchhhhhHHHHHHHHHHHHHhhhcCHh----hhhh
Confidence 9999999999887432110 011111 33456689999988 6666665544433333333333 3347
Q ss_pred HHHHHHHHHHHcC-ChHHHHHHHHHHh---h-----------cCCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccc
Q 000134 1351 CWLQYAKLCRLAG-HYETATRAILEAQ---A-----------SGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEV 1415 (2096)
Q Consensus 1351 ~WL~~AklARKag-~~~~A~~all~a~---~-----------~~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~ 1415 (2096)
.|.++++.|++.+ +.......+.+.. + ..+|...+..-+..|+......+..........++..
T Consensus 1306 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 1384 (2105)
T COG5032 1306 LFIKFVELCEASSIRSKLLEKNIQELLEKLEEIKSPLGTLRDRLPPPWALLDLKRLLATWRQNAFLRINPELLPLLSSL- 1384 (2105)
T ss_pred HHHHHHHHHhhhhHHHHhcchhHHHHHhccccccchhhhhhhcCCCCchhhhhhhhhhHHHHhhhhhhchhhccccchh-
Confidence 8999999999999 3333333333221 1 1123444444455666554443333222211111000
Q ss_pred ccccccccccccCCCCCCCCCccccccc-chhchhHHHHHHHH-HHHH---HHh-CCCCHHHHHHHHHHHHHhccchHHH
Q 000134 1416 VGSTAISSITSLSLVPLNPLPVLSNTQT-LNEKRDIAKTLLLY-SRWI---HYT-GQKQKEDVITLYSRVRELQPMWEKG 1489 (2096)
Q Consensus 1416 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~-~~~~~~~Aka~Lll-akWl---~~~-~~~~~~~i~~~Y~~a~~l~~~weK~ 1489 (2096)
.+....+ ...+..+... ..... ...-...|+.+... +.|. .-. -..+...+...|..+..+...|.++
T Consensus 1385 ~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 1458 (2105)
T COG5032 1385 LNLQSSS-----LSKQLVSRGS-SESAISINSFASVARKHFLPDNQLKKIYQLSNILISEAFLLLRYLLLCRLGRRELKA 1458 (2105)
T ss_pred hhccchh-----ccccccccch-hhhhHHHHHHHHHHHHhcCcHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhhHHHHH
Confidence 0000000 0000000000 00000 00000112222111 2222 211 1233455566777777777788888
Q ss_pred HHH-HHhhhHHHHHHHHhhhhhccc-CCcchhhhhchHHHHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCC
Q 000134 1490 YFY-MAKYCDDVLVDARKRQEENSE-IGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSS 1567 (2096)
Q Consensus 1490 ~~~-la~y~d~l~~~~~~~~e~~~~-~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~ 1567 (2096)
++. |+.-....+.+-.. .... -|..-+ .......+.....+....+.-..+..+|.+.+|...+...
T Consensus 1459 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~------ 1527 (2105)
T COG5032 1459 GLNVWNLTNLELFSDIQE---SEFFEWGKNLK--LLSIIPPIEEIFLSNALSCYLQVKDLLKKLNLFELLGSLL------ 1527 (2105)
T ss_pred HHHhhcccchhHHHHHHH---HHHHHhhhhhH--HhccCCchhHHHHhhhccchHHHHHHHHhhHHHHHhhhhh------
Confidence 887 66655544322111 0000 000000 0011112222333333344445578899999998877521
Q ss_pred ChhhhHhHHHHHHHHHHhhcCCCCCchhhhhhHHhhhccccCchHHHHHHHHHHHHHHHhchhhHHHHHHHhhcCCChhH
Q 000134 1568 SNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIPSR 1647 (2096)
Q Consensus 1568 ~~~~~~~~~~~v~~~~~~~~~~iP~~~wl~~lPQLisRl~h~~~~v~~~l~~il~kv~~~yPqq~lw~l~~~~~S~~~~R 1647 (2096)
..++......+.+.. ...|+..+||+.+++..........+..++.++++.|||+..+++.+..++....+
T Consensus 1528 ---~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~~a~~~~L~~~~~s~~~~~ 1598 (2105)
T COG5032 1528 ---SAKDAAGSYYKNFHI------FDLEISVIPFIPQLLSSLSLLDLNSAQSLLSKIGKEHPQALVFTLRSAIESTALSK 1598 (2105)
T ss_pred ---hHHHHHHhhhhhccc------ccccccccchhhhhhhhcchhHHHHHHHHHHhhhhhchhhhhhhhhHHHHHhhhhh
Confidence 112222222222222 22255555666655555555568889999999999999999999998888777766
Q ss_pred HHHHHHHHHHHHhcCC
Q 000134 1648 REAAAEIIQAAKKGSA 1663 (2096)
Q Consensus 1648 ~~~~~~Il~~~~~~~~ 1663 (2096)
...+..+....+.+.+
T Consensus 1599 e~~~~~~~~~~~~~~~ 1614 (2105)
T COG5032 1599 ESVALSLENKSRTHDP 1614 (2105)
T ss_pred HhHHHHHhhhhhcCCh
Confidence 6666566655554433
|
|
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0011 Score=89.54 Aligned_cols=474 Identities=18% Similarity=0.243 Sum_probs=252.1
Q ss_pred HHHHHHHhhcccCccchhhHHHHHHHHHHccCC----chhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhh
Q 000134 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGT----RDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVL 223 (2096)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~----~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~ 223 (2096)
+-+.++.++......+|+--+-.-+||++--+. .++...-+++.+.| +...+...||.++|.++..+-++-+
T Consensus 37 ~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~---~~~E~~~~vr~k~~dviAeia~~~l- 112 (1075)
T KOG2171|consen 37 LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEI---IQSETEPSVRHKLADVIAEIARNDL- 112 (1075)
T ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH---HHhccchHHHHHHHHHHHHHHHhcc-
Confidence 455677788887788887333333444443333 23333344445455 7788999999999999999775555
Q ss_pred hhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH---HHHHHHHHHhhCCCCcchHHH
Q 000134 224 SSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF---LFLLILLVEQLDNPHVTVRMN 300 (2096)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~---~~~l~~Li~~L~~~n~~v~~~ 300 (2096)
++ +|.+ .+..+.+ -+...|++++|+.+..+..+- ..++...- --.+-++...++-++..||..
T Consensus 113 -------~e--~WPe--ll~~L~q-~~~S~~~~~rE~al~il~s~~--~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~ 178 (1075)
T KOG2171|consen 113 -------PE--KWPE--LLQFLFQ-STKSPNPSLRESALLILSSLP--ETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVA 178 (1075)
T ss_pred -------cc--chHH--HHHHHHH-HhcCCCcchhHHHHHHHHhhh--hhhccccchhHHHHHHHHHHhccCCcchHHHH
Confidence 33 4544 2223334 445567779999988877763 22233222 234455777888888889999
Q ss_pred HHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcCchHHHHHHHHHHhCCChHHHHHhhcccccchhhhccccC
Q 000134 301 ASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDN 380 (2096)
Q Consensus 301 A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~rp~~~~~~~e~llg~~~~~fL~~~~~~~LP~LVl~~~~~ 380 (2096)
|.+-.-..+..+. ..+..++.|+. ++ -. .-.++|.++-..+.|
T Consensus 179 a~rA~~a~~~~~~---------------------------~~~~~~~~~~~-ll----P~-----~l~vl~~~i~~~d~~ 221 (1075)
T KOG2171|consen 179 AVRALGAFAEYLE---------------------------NNKSEVDKFRD-LL----PS-----LLNVLQEVIQDGDDD 221 (1075)
T ss_pred HHHHHHHHHHHhc---------------------------cchHHHHHHHH-Hh----HH-----HHHHhHhhhhccchH
Confidence 9999888766652 11112222221 00 00 001233333333221
Q ss_pred --hhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhc---cccHHHH--HHHHHHHhhhcCCChH------HHHHHhhHH
Q 000134 381 --DQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALH---QADERRL--LSALEFYCIQTGSDNQ------EIFAAALPA 447 (2096)
Q Consensus 381 --~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~---~~~~~~~--~~~l~~~~~~~~~~~~------~~~~~~~~~ 447 (2096)
..+.+.+.+++.. ..+++.+.+..|+.+-+- ..+-++- --+|.|+....+.-++ .+....+|.
T Consensus 222 ~a~~~l~~l~El~e~----~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~ 297 (1075)
T KOG2171|consen 222 AAKSALEALIELLES----EPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPV 297 (1075)
T ss_pred HHHHHHHHHHHHHhh----chHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHH
Confidence 1122344444442 234445555555555441 1111111 1233333333222111 111222222
Q ss_pred HHHHHHHhhcC---------CCchh--HhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHH
Q 000134 448 LLDELICFVDG---------GDSDE--INERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQ 516 (2096)
Q Consensus 448 ~l~eLl~~~~~---------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k 516 (2096)
++. ..+...+ -|.|+ ++.+ ...+++..+|.-+.|...++.+++ .+. .++.+.+..+|
T Consensus 298 ~l~-~mte~~~D~ew~~~d~~ded~~~~~~~--~A~~~lDrlA~~L~g~~v~p~~~~--------~l~-~~l~S~~w~~R 365 (1075)
T KOG2171|consen 298 LLA-MMTEEEDDDEWSNEDDLDEDDEETPYR--AAEQALDRLALHLGGKQVLPPLFE--------ALE-AMLQSTEWKER 365 (1075)
T ss_pred HHH-hcCCcccchhhccccccccccccCcHH--HHHHHHHHHHhcCChhhehHHHHH--------HHH-HHhcCCCHHHH
Confidence 221 1111111 11111 1111 234666666655555554443322 233 45566678888
Q ss_pred HHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCC--CcchhhhHHHHHHHHHhccCCCcchhhHHH-----HHHHHhh
Q 000134 517 KQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKE--SLQCEGLSVLHFFIEQLSRVSPSSTKHVIS-----QVFAALI 589 (2096)
Q Consensus 517 ~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~--~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~-----~i~~~li 589 (2096)
+-+|.+|+.+-+=|+.++..-+|+|+.....+|+.| ..|..||.+-.-|-. ++.|.++ ++...++
T Consensus 366 ~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~st--------dl~p~iqk~~~e~l~~aL~ 437 (1075)
T KOG2171|consen 366 HAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMST--------DLQPEIQKKHHERLPPALI 437 (1075)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhh--------hhcHHHHHHHHHhccHHHH
Confidence 999999999999999999999999999999999754 578888777554444 4444443 3444555
Q ss_pred hccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCCh
Q 000134 590 PFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENL 669 (2096)
Q Consensus 590 p~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~ 669 (2096)
..++... .+......|..++++.-.--++.+..| +|.+-+ + .|..-.++.++
T Consensus 438 ~~ld~~~-~~rV~ahAa~al~nf~E~~~~~~l~pY---------Ld~lm~--~----------------~l~~L~~~~~~ 489 (1075)
T KOG2171|consen 438 ALLDSTQ-NVRVQAHAAAALVNFSEECDKSILEPY---------LDGLME--K----------------KLLLLLQSSKP 489 (1075)
T ss_pred HHhcccC-chHHHHHHHHHHHHHHHhCcHHHHHHH---------HHHHHH--H----------------HHHHHhcCCch
Confidence 5555442 233334455566665533234555522 232210 0 34444567788
Q ss_pred hHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccC
Q 000134 670 NVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALG 740 (2096)
Q Consensus 670 ~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IG 740 (2096)
.|+.++++.+...=..-++.+.. ....++-.|.......+. .+...++-.+-+|+|.||
T Consensus 490 ~v~e~vvtaIasvA~AA~~~F~p-----------Y~d~~Mp~L~~~L~n~~~-~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 490 YVQEQAVTAIASVADAAQEKFIP-----------YFDRLMPLLKNFLQNADD-KDLRELRGKTMECLSLIA 548 (1075)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHh-----------HHHHHHHHHHHHHhCCCc-hhhHHHHhhHHHHHHHHH
Confidence 99999999988754443333222 223333333322221110 112456667778999887
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.021 Score=79.36 Aligned_cols=152 Identities=11% Similarity=0.019 Sum_probs=112.7
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHh--ccCC----h
Q 000134 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH--KSLS----L 1117 (2096)
Q Consensus 1044 ~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~--~~~s----l 1117 (2096)
..++.+....+.|.+|+.+++.-+..... ....+-.+..+|...++++....+...- ..+. .
T Consensus 129 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 196 (899)
T TIGR02917 129 ALRGLAYLGLGQLELAQKSYEQALAIDPR------------SLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDAL 196 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC------------ChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 36788899999999999999987654221 1234667889999999999988886531 1221 1
Q ss_pred hHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcC
Q 000134 1118 QDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197 (2096)
Q Consensus 1118 ~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg 1197 (2096)
......+...|++++|..+|+++++..|++......+..|+...|+++......+.+....|.... .........+..|
T Consensus 197 ~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 275 (899)
T TIGR02917 197 LLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPL-AHYLKALVDFQKK 275 (899)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCch-HHHHHHHHHHHhc
Confidence 123445788999999999999999999999988889999999999999988888776665554322 2223445678899
Q ss_pred ChhhHHHhhcc
Q 000134 1198 RWDLMDEYLSG 1208 (2096)
Q Consensus 1198 ~Wd~l~~~l~~ 1208 (2096)
+|+.-.+.+..
T Consensus 276 ~~~~A~~~~~~ 286 (899)
T TIGR02917 276 NYEDARETLQD 286 (899)
T ss_pred CHHHHHHHHHH
Confidence 99876665544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0073 Score=83.90 Aligned_cols=409 Identities=12% Similarity=0.052 Sum_probs=229.0
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----h
Q 000134 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----L 1117 (2096)
Q Consensus 1044 ~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l 1117 (2096)
..++......+.|..|+.+++..+...+. ....+..|..+|...++++....+... ...+. .
T Consensus 469 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 536 (899)
T TIGR02917 469 NLLGAIYLGKGDLAKAREAFEKALSIEPD------------FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI 536 (899)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhCCC------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 45788888999999999999987653211 123466788999999999987777542 11121 2
Q ss_pred hHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcC
Q 000134 1118 QDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197 (2096)
Q Consensus 1118 ~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg 1197 (2096)
......+...|++++|..+|+++++..|++......+.+++...|+++......+......|.....|. .-..+....|
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~ 615 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWL-MLGRAQLAAG 615 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHcC
Confidence 233455678999999999999999999999888888999999999999888888776665554433333 3355667889
Q ss_pred ChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHh
Q 000134 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKL 1277 (2096)
Q Consensus 1198 ~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kL 1277 (2096)
+|+.-.++....-.. .+.+......+|.++. ..++.....+.++.+.. ......+.+.........
T Consensus 616 ~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~l~~~~~~- 681 (899)
T TIGR02917 616 DLNKAVSSFKKLLAL------QPDSALALLLLADAYA--VMKNYAKAITSLKRALE-----LKPDNTEAQIGLAQLLLA- 681 (899)
T ss_pred CHHHHHHHHHHHHHh------CCCChHHHHHHHHHHH--HcCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHH-
Confidence 998876665543211 0112223334554443 34554444433332221 111112222222222222
Q ss_pred hhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHH
Q 000134 1278 HLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAK 1357 (2096)
Q Consensus 1278 H~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~Ak 1357 (2096)
..+.+++..+..... .. . ....... .+..+.-.-..++ .+-+=.++++ +.... . ...+...+.
T Consensus 682 --~~~~~~A~~~~~~~~--~~-~-~~~~~~~----~~~~~~~~~~g~~--~~A~~~~~~~-~~~~~---~-~~~~~~l~~ 744 (899)
T TIGR02917 682 --AKRTESAKKIAKSLQ--KQ-H-PKAALGF----ELEGDLYLRQKDY--PAAIQAYRKA-LKRAP---S-SQNAIKLHR 744 (899)
T ss_pred --cCCHHHHHHHHHHHH--hh-C-cCChHHH----HHHHHHHHHCCCH--HHHHHHHHHH-HhhCC---C-chHHHHHHH
Confidence 223333333322100 00 0 0001100 0111111111111 1111122221 21111 1 146777788
Q ss_pred HHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCC
Q 000134 1358 LCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPL 1435 (2096)
Q Consensus 1358 lARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1435 (2096)
+.++.|+++.|...+.++.... ++.+....|.++...|+..+|+..++++++..|.
T Consensus 745 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---------------------- 802 (899)
T TIGR02917 745 ALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD---------------------- 802 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC----------------------
Confidence 8888888888888777766543 3446667778888888888888888877652110
Q ss_pred CcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCC
Q 000134 1436 PVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIG 1515 (2096)
Q Consensus 1436 ~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~g 1515 (2096)
.+.++..+|......|+ .+.++.|.++.+..|.-...+..+|..+... |
T Consensus 803 --------------~~~~~~~l~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------g 851 (899)
T TIGR02917 803 --------------NAVVLNNLAWLYLELKD---PRALEYAEKALKLAPNIPAILDTLGWLLVEK--------------G 851 (899)
T ss_pred --------------CHHHHHHHHHHHHhcCc---HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc--------------C
Confidence 02233444444444444 4477888888888887777777666654221 0
Q ss_pred cchhhhhchHHHHHHHHHHhhccCCcchhhhHHHHHHhhhhcC
Q 000134 1516 PSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFG 1558 (2096)
Q Consensus 1516 ~~~~~~~~~l~~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g 1558 (2096)
-...|+..|-+++..++.. -.....+...++..|
T Consensus 852 --------~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~g 885 (899)
T TIGR02917 852 --------EADRALPLLRKAVNIAPEA-AAIRYHLALALLATG 885 (899)
T ss_pred --------CHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHcC
Confidence 1235777888888777652 223333444444444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.02 Score=83.05 Aligned_cols=345 Identities=13% Similarity=0.085 Sum_probs=179.9
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhh--hHh-----------H
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKK--TWC-----------M 1187 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~--~~~-----------~ 1187 (2096)
...+...|++++|...|+++++..|++.+.+..+-.++...|+++....+.+......|+... .|. .
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 456778999999999999999999999998888889999999999988887766554443211 111 1
Q ss_pred HHHHHHHhcCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhH
Q 000134 1188 QGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSY 1267 (2096)
Q Consensus 1188 ~~vEAAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy 1267 (2096)
...+++...|+++.-.+++..+-.. .+.+..-...+|.++ ...++..+..+..+++... .+. .
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~------~P~~~~a~~~Lg~~~--~~~g~~~eA~~~y~~aL~~-----~p~----~ 418 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQV------DNTDSYAVLGLGDVA--MARKDYAAAERYYQQALRM-----DPG----N 418 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHh-----CCC----C
Confidence 1234667889998877766544221 011122233455444 4455555444433332211 111 1
Q ss_pred HhhhHHHHHhhhhhHHHHHHHhhhccccccccCCCChHHHHHHH-----HHHHHHhhhccCChhhhhhHHHHHHhhcCcC
Q 000134 1268 TRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLM-----ANWENRLKYTQPSLWAREPLLAFRRMVFGAS 1342 (2096)
Q Consensus 1268 ~r~y~~l~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~ 1342 (2096)
..++..+..++.-...+++..++..... .......... ..|..+-......=+..+-+=.+++++ .
T Consensus 419 ~~a~~~L~~l~~~~~~~~A~~~l~~l~~------~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al-~-- 489 (1157)
T PRK11447 419 TNAVRGLANLYRQQSPEKALAFIASLSA------SQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL-A-- 489 (1157)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhCCH------HHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH-H--
Confidence 1222223333322334444443321000 0000000000 001111110000001112222223322 1
Q ss_pred CCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccc-c
Q 000134 1343 GLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGS-T 1419 (2096)
Q Consensus 1343 ~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~-~ 1419 (2096)
..++....+...|.+..+.|+++.|...+.++.... .+......+.++...|+..+|+..|+.....-....... .
T Consensus 490 -~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~ 568 (1157)
T PRK11447 490 -LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELA 568 (1157)
T ss_pred -hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHH
Confidence 122334566778888888888888888887776543 345566667777778888888887775422100000000 0
Q ss_pred -c------cccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHH
Q 000134 1420 -A------ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFY 1492 (2096)
Q Consensus 1420 -~------~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~ 1492 (2096)
. ......+. .-.+.... .......+....+++.+|.|..+.|+ .++.++.|+++++..|....+++.
T Consensus 569 ~~l~~~~~l~~a~~l~-~~G~~~eA---~~~l~~~p~~~~~~~~La~~~~~~g~--~~~A~~~y~~al~~~P~~~~a~~~ 642 (1157)
T PRK11447 569 QRLQSDQVLETANRLR-DSGKEAEA---EALLRQQPPSTRIDLTLADWAQQRGD--YAAARAAYQRVLTREPGNADARLG 642 (1157)
T ss_pred HHHhhhHHHHHHHHHH-HCCCHHHH---HHHHHhCCCCchHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 0 00000000 00000000 00000111123467788999887776 888999999999999999999999
Q ss_pred HHhhhH
Q 000134 1493 MAKYCD 1498 (2096)
Q Consensus 1493 la~y~d 1498 (2096)
+|..|.
T Consensus 643 la~~~~ 648 (1157)
T PRK11447 643 LIEVDI 648 (1157)
T ss_pred HHHHHH
Confidence 988763
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.042 Score=76.29 Aligned_cols=384 Identities=12% Similarity=0.080 Sum_probs=214.3
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHhc--cC-C---hhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHH
Q 000134 1086 DEDVSFLMEIYSFLDEPDGLSGLARLHK--SL-S---LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLL 1159 (2096)
Q Consensus 1086 ~~~~~~L~~IYa~LdEpDgl~Gi~~~~~--~~-s---l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~ 1159 (2096)
+..+.-...|+.-.++.+.+..++.... .+ + .......+...|+|.+|...|+++++..|++.+...++..++.
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3567788899999999999998876422 11 1 2223456899999999999999999999999999999999999
Q ss_pred hccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHcc
Q 000134 1160 NMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKK 1239 (2096)
Q Consensus 1160 ~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~ 1239 (2096)
..|+++..+.+.+.+....|+... +..+ ..+....|+.+.-...+...-.. .+.+......++.++. ..+
T Consensus 95 ~~g~~~eA~~~l~~~l~~~P~~~~-~~~l-a~~l~~~g~~~~Al~~l~~al~~------~P~~~~~~~~la~~l~--~~~ 164 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGAPDKAN-LLAL-AYVYKRAGRHWDELRAMTQALPR------APQTQQYPTEYVQALR--NNR 164 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHH-HHHH-HHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHH--HCC
Confidence 999999999999888877776655 4433 33455677776554444432210 0112233334444432 233
Q ss_pred CchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhhh----------------hhHHHHHHHhhhccccccccCCCC
Q 000134 1240 DHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHL----------------LQELEDFHAILVNDSFLEKSFLPS 1303 (2096)
Q Consensus 1240 d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH~----------------L~ELee~~~~~~~~~~~~~~~~~~ 1303 (2096)
......+.++. ....|=..... .......++++.. +.+++.+..... + .+.
T Consensus 165 ~~e~Al~~l~~---~~~~p~~~~~l--~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~------~--~p~ 231 (765)
T PRK10049 165 LSAPALGAIDD---ANLTPAEKRDL--EADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH------D--NPD 231 (765)
T ss_pred ChHHHHHHHHh---CCCCHHHHHHH--HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc------c--CCc
Confidence 33322222221 00000000000 0001111111111 111111111100 0 000
Q ss_pred hHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--
Q 000134 1304 DLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP-- 1381 (2096)
Q Consensus 1304 ~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~-- 1381 (2096)
........+-.|+-.+...-+..+-+-.+++ ++......+.....|+ +.+....|+++.|...+.++.+..+.
T Consensus 232 --~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~-ll~~~~~~P~~a~~~l--a~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 232 --ATADYQRARIDRLGALLARDRYKDVISEYQR-LKAEGQIIPPWAQRWV--ASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred --cchHHHHHHHHHHHHHHHhhhHHHHHHHHHH-hhccCCCCCHHHHHHH--HHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 0001111122222222111122333333444 2222211233455675 77888999999999998887654421
Q ss_pred ----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHH
Q 000134 1382 ----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLY 1457 (2096)
Q Consensus 1382 ----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~Lll 1457 (2096)
......+..+-+.|+..+|+..++.+....|..... .... ... .+.....+++++
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~------~~~~---~~~------------p~~~~~~a~~~~ 365 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRL------YGSP---TSI------------PNDDWLQGQSLL 365 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEee------cCCC---CCC------------CCchHHHHHHHH
Confidence 233334445668899999999999887654322100 0000 000 011224566777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhc
Q 000134 1458 SRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLH 1537 (2096)
Q Consensus 1458 akWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~ 1537 (2096)
+..+...|+ .++.++.|.++....|.....++.+|.-+... | -...++..|-+++.
T Consensus 366 a~~l~~~g~--~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~--------------g--------~~~~A~~~l~~al~ 421 (765)
T PRK10049 366 SQVAKYSND--LPQAEMRARELAYNAPGNQGLRIDYASVLQAR--------------G--------WPRAAENELKKAEV 421 (765)
T ss_pred HHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc--------------C--------CHHHHHHHHHHHHh
Confidence 777766665 78888999999999999998999888865322 0 12356777777777
Q ss_pred cCCcc
Q 000134 1538 RGHKN 1542 (2096)
Q Consensus 1538 ~g~~~ 1542 (2096)
.-+..
T Consensus 422 l~Pd~ 426 (765)
T PRK10049 422 LEPRN 426 (765)
T ss_pred hCCCC
Confidence 66554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.031 Score=81.08 Aligned_cols=124 Identities=13% Similarity=0.026 Sum_probs=92.5
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCChh----
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLSLQ---- 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~sl~---- 1118 (2096)
..+.+...-+.|..|+-+++..++..+. ..+.+..|..+|...++.|........ ...++..
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~------------~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~ 341 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPK------------DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDK 341 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhH
Confidence 4477788889999999999998765321 124567888999999999988777542 2222111
Q ss_pred --------------HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChh
Q 000134 1119 --------------DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2096)
Q Consensus 1119 --------------~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~ 1180 (2096)
.+...+...|++++|..+|+++++..|++...+.++=.++...|+++....+.+..+...|+
T Consensus 342 ~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~ 417 (1157)
T PRK11447 342 WESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 12234568899999999999999999998888888888999999999888877766655554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.018 Score=77.95 Aligned_cols=86 Identities=14% Similarity=0.180 Sum_probs=62.9
Q ss_pred hhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhc
Q 000134 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2096)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrl 1196 (2096)
+.++...+.+.|++++|..+|++++...|+ ...+.++-.|+..+|+|+..+...+..+...|+..+.+. ....+.-.+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~-~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALN-RRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHc
Confidence 334566678889999999999999998886 345667788999999999888877766666666544433 345566778
Q ss_pred CChhhHHH
Q 000134 1197 GRWDLMDE 1204 (2096)
Q Consensus 1197 g~Wd~l~~ 1204 (2096)
|+|+.-..
T Consensus 208 g~~~eA~~ 215 (615)
T TIGR00990 208 GKYADALL 215 (615)
T ss_pred CCHHHHHH
Confidence 88876543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.059 Score=73.51 Aligned_cols=332 Identities=13% Similarity=0.014 Sum_probs=192.3
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----hh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l~ 1118 (2096)
..+.+..+-|.+..|+-.++..+.....+ .+.+..|.-.+-..+++|........ ...|+ ..
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~------------~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~ 114 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNG------------RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVL 114 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCc------------hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 45778888999999999999877654321 23455666666678888877776542 11222 22
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCC
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~ 1198 (2096)
.....+...|++++|...|+++++..|++...+..+.+++..+|+++......+.+....|+....+.. .-+.-+.|+
T Consensus 115 ~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~--~~~l~~~g~ 192 (656)
T PRK15174 115 LVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT--CLSFLNKSR 192 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHcCC
Confidence 234567889999999999999999999999888889999999999998777666554444433222211 223556788
Q ss_pred hhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhh
Q 000134 1199 WDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLH 1278 (2096)
Q Consensus 1199 Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH 1278 (2096)
++.-.+.....-.. ...........++.++ ...++..+ .+...+..+.. . .+.. ..+ .
T Consensus 193 ~~eA~~~~~~~l~~-----~~~~~~~~~~~l~~~l--~~~g~~~e---A~~~~~~al~~--~---p~~~-~~~------~ 250 (656)
T PRK15174 193 LPEDHDLARALLPF-----FALERQESAGLAVDTL--CAVGKYQE---AIQTGESALAR--G---LDGA-ALR------R 250 (656)
T ss_pred HHHHHHHHHHHHhc-----CCCcchhHHHHHHHHH--HHCCCHHH---HHHHHHHHHhc--C---CCCH-HHH------H
Confidence 87766554432110 0000111111122222 12333332 23222222110 0 1110 000 0
Q ss_pred hhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHH
Q 000134 1279 LLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKL 1358 (2096)
Q Consensus 1279 ~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~Akl 1358 (2096)
.|..+ +... + ...+.. .+-+-.+++++ .. .++....|...+.+
T Consensus 251 ~Lg~~-----l~~~------G---~~~eA~-------------------~~A~~~~~~Al-~l---~P~~~~a~~~lg~~ 293 (656)
T PRK15174 251 SLGLA-----YYQS------G---RSREAK-------------------LQAAEHWRHAL-QF---NSDNVRIVTLYADA 293 (656)
T ss_pred HHHHH-----HHHc------C---CchhhH-------------------HHHHHHHHHHH-hh---CCCCHHHHHHHHHH
Confidence 00000 0000 0 000000 01122222221 11 12345678999999
Q ss_pred HHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCC
Q 000134 1359 CRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLP 1436 (2096)
Q Consensus 1359 ARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1436 (2096)
..+.|+++.|...+.++....+ +.+..-.+..+++.|+..+|+..+++.+...|.
T Consensus 294 l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~----------------------- 350 (656)
T PRK15174 294 LIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV----------------------- 350 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-----------------------
Confidence 9999999999999999887753 456777899999999999999999988653211
Q ss_pred cccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000134 1437 VLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2096)
Q Consensus 1437 ~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~we 1487 (2096)
.+.++..+|.-+...| ..++.++.|+++++.+|+..
T Consensus 351 -------------~~~~~~~~a~al~~~G--~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 351 -------------TSKWNRYAAAALLQAG--KTSEAESVFEHYIQARASHL 386 (656)
T ss_pred -------------chHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhChhhc
Confidence 0112233343333444 47888999999999988643
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.015 Score=76.99 Aligned_cols=325 Identities=16% Similarity=0.098 Sum_probs=179.4
Q ss_pred HHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHH----
Q 000134 1047 ARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELL---- 1122 (2096)
Q Consensus 1047 A~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil---- 1122 (2096)
|.-.+--|.+.+|...++.-|++.+.. ...+..|.+||-+.++..-..-.+-+-..++..+.-+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~~------------~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~l 213 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPRN------------PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRL 213 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCccc------------hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 333444599999999999988864321 2358899999999976654443332211122222222
Q ss_pred --HhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChh----hhhhHhH---------
Q 000134 1123 --SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ----YKKTWCM--------- 1187 (2096)
Q Consensus 1123 --~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~----~~~~~~~--------- 1187 (2096)
..++.|+|..|--||.++++..|++.........=++++|++...+.--.-+....|. +..+...
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 2489999999999999999999999877766666677888887554433334444441 1111000
Q ss_pred HHHHHHHhcCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHH--------------
Q 000134 1188 QGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQ-------------- 1253 (2096)
Q Consensus 1188 ~~vEAAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~-------------- 1253 (2096)
..-|.| |..++.++..... ..+.-+.++. |-+.|.++........|...|.
T Consensus 294 ~~~e~a-----~~~le~~~s~~~~---------~~~~ed~ni~-ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 294 NERERA-----AKALEGALSKEKD---------EASLEDLNIL-AELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred hHHHHH-----HHHHHHHHhhccc---------cccccHHHHH-HHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 011444 4467766652111 1111222333 2222333333333344443333
Q ss_pred ---Hhhhhhhccch-hhHHhhh-HHHHHhhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhh
Q 000134 1254 ---VLIAPLAAAGM-DSYTRAY-PFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAR 1328 (2096)
Q Consensus 1254 ---~l~~~Lsa~~~-eSy~r~y-~~l~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~ 1328 (2096)
.--.++...+. .||.=-. -.++-|+-|.|.|....+.... ..+... ..+.-.+.....+=+-..+
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l--~~~n~~--~~d~~dL~~d~a~al~~~~------ 428 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFL--VEDNVW--VSDDVDLYLDLADALTNIG------ 428 (895)
T ss_pred hccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHH--HHhcCC--hhhhHHHHHHHHHHHHhcc------
Confidence 00111222222 2554333 6677778887777655443200 001000 1111122222222121111
Q ss_pred hhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHH
Q 000134 1329 EPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQ 1406 (2096)
Q Consensus 1329 e~iLslRr~vl~~~~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~ 1406 (2096)
.+=++++=..--...-...-+-.|.+.|+.-+.-|+++.|..+-..+..+.+ -++.|--|-++-..|++++|+.+|++
T Consensus 429 ~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 429 KYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQ 508 (895)
T ss_pred cHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhc
Confidence 2222222111000111112266899999999999999999988888776643 46888889999999999999999998
Q ss_pred Hh
Q 000134 1407 NL 1408 (2096)
Q Consensus 1407 ~i 1408 (2096)
.+
T Consensus 509 ~~ 510 (895)
T KOG2076|consen 509 II 510 (895)
T ss_pred cc
Confidence 65
|
|
| >KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.25 Score=65.92 Aligned_cols=447 Identities=17% Similarity=0.204 Sum_probs=230.1
Q ss_pred hcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhh-HHHHHHHHHHhhhc-CChhHHHHHHHHHHHHHhhh-cccc
Q 000134 200 LNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNE-LKLLDVIKLAFTAA-DDPLILETLLESTAELMMAV-DVHS 276 (2096)
Q Consensus 200 ~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~d~~i~eTll~~~~~i~~~~-~~~~ 276 (2096)
.+..+-.|+-.+-.+..-+.|-- = |++ ..-+.+- ..|+-++.++.... +++.|+=-++..+|++-.+- ..=.
T Consensus 95 ~s~keq~rdissi~Lktvi~nl~--P-~~~--~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~ 169 (1233)
T KOG1824|consen 95 LSGKEQLRDISSIGLKTVIANLP--P-SSS--SFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLP 169 (1233)
T ss_pred ccchhhhccHHHHHHHHHHhcCC--C-ccc--cccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCc
Confidence 56666777776666665331100 0 111 1112222 45777778777774 44558877787777763211 0011
Q ss_pred hhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcCchHHHHHHHHHHhCC
Q 000134 277 QHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGV 356 (2096)
Q Consensus 277 e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~rp~~~~~~~e~llg~ 356 (2096)
+-....+.+|+.||+.+-..||-.|..-|-.+|-..+.-.| ..+.+.+.++|-.+++|+..=.
T Consensus 170 ~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly-----------~~li~~Ll~~L~~~~q~~~~rt------ 232 (1233)
T KOG1824|consen 170 NFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLY-----------VELIEHLLKGLSNRTQMSATRT------ 232 (1233)
T ss_pred chHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHH-----------HHHHHHHHhccCCCCchHHHHH------
Confidence 23445777899999999999999999999888666543222 2334557788888887744311
Q ss_pred ChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCCC-------chhHHhhhHHHHHHHHhccccHHHH-HHHHHH
Q 000134 357 ETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTD-------MVPLIVTWIPKVLAFALHQADERRL-LSALEF 428 (2096)
Q Consensus 357 ~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~-------~~~l~~~~~~~Ila~ll~~~~~~~~-~~~l~~ 428 (2096)
-++.|.+|+++.+.. ..|++.+++-+| +.+++++ ..||+-
T Consensus 233 --------------------------~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~------e~~dDELrE~~lQa 280 (1233)
T KOG1824|consen 233 --------------------------YIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKI------EEDDDELREYCLQA 280 (1233)
T ss_pred --------------------------HHHHHHHHHHHhcchhhcccchhhHHHHHHhccc------ccCcHHHHHHHHHH
Confidence 123456666655543 234444444333 3344444 667776
Q ss_pred HhhhcCCChHHHHHHhhHHHHHHHHHhh------cCCC-chhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHH
Q 000134 429 YCIQTGSDNQEIFAAALPALLDELICFV------DGGD-SDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLN 501 (2096)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~l~eLl~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~ 501 (2096)
+..+..-.++++.. ..|.++.-++-++ ..++ .|+.. . ...+. .++=
T Consensus 281 le~fl~rcp~ei~p-~~pei~~l~l~yisYDPNy~yd~~eDed~-----------~---~~ed~---eDde--------- 333 (1233)
T KOG1824|consen 281 LESFLRRCPKEILP-HVPEIINLCLSYISYDPNYNYDTEEDEDA-----------M---FLEDE---EDDE--------- 333 (1233)
T ss_pred HHHHHHhChhhhcc-cchHHHHHHHHHhccCCCCCCCCccchhh-----------h---hhhcc---ccch---------
Confidence 66555555555554 4566664333221 1111 11110 0 00000 0000
Q ss_pred HhhhhhcCCCChHHH--HHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCC-----
Q 000134 502 SIDRKMLHAEDLSLQ--KQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSP----- 574 (2096)
Q Consensus 502 ~~~~~l~~~~~~~~k--~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~~~----- 574 (2096)
-++.-...+|+.+| |.+.+++..||-=-...+..|...+.--|.+-+...| ...+..+.++++..|..+.+
T Consensus 334 -~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkERE-EnVk~dvf~~yi~ll~qt~~~~~~~ 411 (1233)
T KOG1824|consen 334 -QDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKERE-ENVKADVFHAYIALLKQTRPVIEVL 411 (1233)
T ss_pred -hccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHh-hhHHHHHHHHHHHHHHcCCCCcccc
Confidence 01111223566655 5678899888854333444444333333444442111 24445555555555543222
Q ss_pred --------cchh---hHHHH----HHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccC-----CCCCCh
Q 000134 575 --------SSTK---HVISQ----VFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEF-----PLLPSI 634 (2096)
Q Consensus 575 --------~~l~---~ll~~----i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~l-----p~Lp~i 634 (2096)
+... .+|+. |+.++-+.+. +.+-+++.....+|..||.--++.+.+|+..+ +.|++-
T Consensus 412 ~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr---~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~Dk 488 (1233)
T KOG1824|consen 412 ADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLR---EKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDK 488 (1233)
T ss_pred cCchhhhccCCccchHHHHhhhHHHHHHHHHHHh---hccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCc
Confidence 0011 34443 3444444443 22334678899999999999999999998776 445553
Q ss_pred hhhHHH--------HHHHHHhcCC--CCHHHHHH-HHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCch
Q 000134 635 AALTEV--------NKAIQEARGP--MTLKDQLL-AAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLD 703 (2096)
Q Consensus 635 p~l~~v--------~~~l~~~r~~--~~l~~~l~-~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~ 703 (2096)
...+.. ...|...... -+....+. ..+-.++..=..|..+||--..++.+.- +.+-.+-.++-.+
T Consensus 489 Ssss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvi----rpl~~~~~~d~~~ 564 (1233)
T KOG1824|consen 489 SSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVI----RPLQPPSSFDASP 564 (1233)
T ss_pred cchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHh----cccCCCccCCCCh
Confidence 333222 1222111100 01111221 1222333323455666666555554332 2222222222235
Q ss_pred hHHHHHHHHHHHhhhhccccchhhHHHHHHHhhccc
Q 000134 704 VLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGAL 739 (2096)
Q Consensus 704 vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~I 739 (2096)
.+.++..+-+.-... +..++++++++-.|+|.+
T Consensus 565 ~v~~m~~~tl~rL~a---~d~DqeVkeraIscmgq~ 597 (1233)
T KOG1824|consen 565 YVKTMYDCTLQRLKA---TDSDQEVKERAISCMGQI 597 (1233)
T ss_pred hHHHHHHHHHHHHhc---ccccHHHHHHHHHHHHHH
Confidence 677777776655433 345689999999999976
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.18 Score=68.34 Aligned_cols=50 Identities=14% Similarity=0.295 Sum_probs=42.1
Q ss_pred HHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHh
Q 000134 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHV 1171 (2096)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~ 1171 (2096)
..|.+.|+|++|..+|+.+++..|++......+-.|+..+|+|+..+...
T Consensus 168 ~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~ 217 (615)
T TIGR00990 168 ACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL 217 (615)
T ss_pred HHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34678899999999999999999999888888888999999998765433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.094 Score=71.57 Aligned_cols=309 Identities=11% Similarity=0.003 Sum_probs=171.2
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCCh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~W 1199 (2096)
=++.+-..|++.+|++.|+.+++..|++.+....+..|+...|+++..+...+.+....|+...-+. ....+.-..|++
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~-~la~~l~~~g~~ 126 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVL-LVASVLLKSKQY 126 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHHcCCH
Confidence 3566778888888888888888888888877777777888888888887777777666665443332 234556677888
Q ss_pred hhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhhh
Q 000134 1200 DLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHL 1279 (2096)
Q Consensus 1200 d~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH~ 1279 (2096)
+.-.+.+...-.. .+.+......+++++ ...++..+.. ...+..+ ...+...+.+. .+..+..
T Consensus 127 ~~Ai~~l~~Al~l------~P~~~~a~~~la~~l--~~~g~~~eA~---~~~~~~~--~~~P~~~~a~~----~~~~l~~ 189 (656)
T PRK15174 127 ATVADLAEQAWLA------FSGNSQIFALHLRTL--VLMDKELQAI---SLARTQA--QEVPPRGDMIA----TCLSFLN 189 (656)
T ss_pred HHHHHHHHHHHHh------CCCcHHHHHHHHHHH--HHCCChHHHH---HHHHHHH--HhCCCCHHHHH----HHHHHHH
Confidence 7765555443210 011222334445443 2334433322 2222111 11111111111 1112333
Q ss_pred hhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHH
Q 000134 1280 LQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLC 1359 (2096)
Q Consensus 1280 L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklA 1359 (2096)
..+++++....... ... .......... ...+ .....=+..+-+-.+++++ .. ..+....|...+.+.
T Consensus 190 ~g~~~eA~~~~~~~--l~~-~~~~~~~~~~----~l~~--~l~~~g~~~eA~~~~~~al-~~---~p~~~~~~~~Lg~~l 256 (656)
T PRK15174 190 KSRLPEDHDLARAL--LPF-FALERQESAG----LAVD--TLCAVGKYQEAIQTGESAL-AR---GLDGAALRRSLGLAY 256 (656)
T ss_pred cCCHHHHHHHHHHH--Hhc-CCCcchhHHH----HHHH--HHHHCCCHHHHHHHHHHHH-hc---CCCCHHHHHHHHHHH
Confidence 34455544433210 000 0000000000 0000 0000011223333344432 21 234467888999999
Q ss_pred HHcCChHH----HHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCC
Q 000134 1360 RLAGHYET----ATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLN 1433 (2096)
Q Consensus 1360 RKag~~~~----A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 1433 (2096)
...|+++. |...+.+|....+ +.+....|.++...|+..+|+..+++++...| .
T Consensus 257 ~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-------------------~- 316 (656)
T PRK15174 257 YQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-------------------D- 316 (656)
T ss_pred HHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-------------------C-
Confidence 99999985 6777777776643 45778889999999999999999999875211 1
Q ss_pred CCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000134 1434 PLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2096)
Q Consensus 1434 ~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~ 1497 (2096)
.+.++..+|.-+...|+ .++.+..|.++.+.+|.....++..|..+
T Consensus 317 ----------------~~~a~~~La~~l~~~G~--~~eA~~~l~~al~~~P~~~~~~~~~a~al 362 (656)
T PRK15174 317 ----------------LPYVRAMYARALRQVGQ--YTAASDEFVQLAREKGVTSKWNRYAAAAL 362 (656)
T ss_pred ----------------CHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 02234445555555554 67888999999999987655555555433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.095 Score=66.43 Aligned_cols=275 Identities=15% Similarity=0.087 Sum_probs=157.6
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccCh--h-hhhhHhHHHHHHHHhcC
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP--Q-YKKTWCMQGVQAAWRLG 1197 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p--~-~~~~~~~~~vEAAWrlg 1197 (2096)
.+.+...|++++|...|+.+++..|++...+..+-.++...|+++......+.+....+ . ........-..+.+..|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 44566889999999999999999999998888999999999999988887776544311 1 11111222345677889
Q ss_pred ChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHh
Q 000134 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKL 1277 (2096)
Q Consensus 1198 ~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kL 1277 (2096)
+++.-.+++...-.. .+........++.++ ...++..+..+..+.+... . ....... +..+
T Consensus 122 ~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~--~~~g~~~~A~~~~~~~~~~-----~---~~~~~~~---~~~~ 182 (389)
T PRK11788 122 LLDRAEELFLQLVDE------GDFAEGALQQLLEIY--QQEKDWQKAIDVAERLEKL-----G---GDSLRVE---IAHF 182 (389)
T ss_pred CHHHHHHHHHHHHcC------CcchHHHHHHHHHHH--HHhchHHHHHHHHHHHHHh-----c---CCcchHH---HHHH
Confidence 998877766554321 011112222333332 3344443333322221110 0 0000000 0000
Q ss_pred hhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHH
Q 000134 1278 HLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAK 1357 (2096)
Q Consensus 1278 H~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~Ak 1357 (2096)
...+- ..+... .. ..+....++.-++. .......|+..++
T Consensus 183 --~~~la--~~~~~~---------~~---~~~A~~~~~~al~~------------------------~p~~~~~~~~la~ 222 (389)
T PRK11788 183 --YCELA--QQALAR---------GD---LDAARALLKKALAA------------------------DPQCVRASILLGD 222 (389)
T ss_pred --HHHHH--HHHHhC---------CC---HHHHHHHHHHHHhH------------------------CcCCHHHHHHHHH
Confidence 00000 000000 00 00111111111110 0112456888999
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCC---hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCC
Q 000134 1358 LCRLAGHYETATRAILEAQASGAP---NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNP 1434 (2096)
Q Consensus 1358 lARKag~~~~A~~all~a~~~~~~---~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 1434 (2096)
+..+.|+++.|...+.++....+. .+...-+..+...|+.++|+..++.++...| .
T Consensus 223 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p-------------------~-- 281 (389)
T PRK11788 223 LALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP-------------------G-- 281 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------------------C--
Confidence 999999999999999998876543 2345567889999999999999998765211 0
Q ss_pred CCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHH
Q 000134 1435 LPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYM 1493 (2096)
Q Consensus 1435 ~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~l 1493 (2096)
. . ....+++.+...|+ .++..+.|.++++..|+....+..+
T Consensus 282 ------------~---~-~~~~la~~~~~~g~--~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 282 ------------A---D-LLLALAQLLEEQEG--PEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred ------------c---h-HHHHHHHHHHHhCC--HHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 0 0 12556666666664 7788999999999999776443333
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.19 Score=63.61 Aligned_cols=118 Identities=12% Similarity=-0.010 Sum_probs=86.3
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH-hccCCh------
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-HKSLSL------ 1117 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~-~~~~sl------ 1117 (2096)
..+..+..++.|..|+-+++.-++.. |. ....+..|..+|...++.+...-+... ...+..
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~-----p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 107 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVD-----PE-------TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRL 107 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC-----cc-------cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHH
Confidence 35778889999999999999987642 21 124567788899999998877666542 222211
Q ss_pred ---hHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhh
Q 000134 1118 ---QDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGL 1174 (2096)
Q Consensus 1118 ---~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl 1174 (2096)
..-+..|.+.|++++|..+|+.+++..|.+......+..++...|+|+......+.+
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 122456788899999999999999888887777778888888888888766655544
|
|
| >KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.08 E-value=2 Score=56.10 Aligned_cols=102 Identities=13% Similarity=0.108 Sum_probs=69.8
Q ss_pred HHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhh-
Q 000134 193 KCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMA- 271 (2096)
Q Consensus 193 ~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~- 271 (2096)
+||..+ .|+++.+|-.-|-.|.-++ +-++..++ -..|..++..+. ..|....|-.+-++..||.-
T Consensus 94 ~~l~~l-gd~~~lIr~tvGivITTI~---------s~~~~~~w---pelLp~L~~~L~-s~d~n~~EgA~~AL~KIcEDs 159 (885)
T KOG2023|consen 94 ECLHGL-GDASPLIRATVGIVITTIA---------STGGLQHW---PELLPQLCELLD-SPDYNTCEGAFGALQKICEDS 159 (885)
T ss_pred HHHhhc-cCchHHHHhhhhheeeeee---------cccccccc---hhHHHHHHHHhc-CCcccccchhHHHHHHHHhhh
Confidence 487767 9999999988877666543 43333333 556777887444 45555788888888777632
Q ss_pred -hc----ccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHH
Q 000134 272 -VD----VHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKS 308 (2096)
Q Consensus 272 -~~----~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l 308 (2096)
.. ...+-+++.+=.++++..|++|.+|+-|..=+...
T Consensus 160 a~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~ 201 (885)
T KOG2023|consen 160 AQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQF 201 (885)
T ss_pred HHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhe
Confidence 21 22244556667799999999999999998766544
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.24 Score=63.54 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh-HHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN-VHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~~-~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
+.....+..+++|.++|.++.|..++..+....+.. ..++.|.++++.|++++|.++.++++.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 335578899999999999999999999998876555 458999999999999999999998865
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.2 Score=66.29 Aligned_cols=170 Identities=19% Similarity=0.211 Sum_probs=108.6
Q ss_pred HHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcc
Q 000134 152 YFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDEN 231 (2096)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~ 231 (2096)
.|..|=+...+.|.++| ++|.+++.=...+.+ ..+...-|..+|.|++..||.-++++|....+++..
T Consensus 43 lf~~L~~~~~e~v~~~~-~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~-------- 110 (503)
T PF10508_consen 43 LFDCLNTSNREQVELIC-DILKRLLSALSPDSL---LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEG-------- 110 (503)
T ss_pred HHHHHhhcChHHHHHHH-HHHHHHHhccCHHHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHH--------
Confidence 66677777777776655 999999997775543 233445677788999999999999999887633321
Q ss_pred cccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHH-HHHHHHhhCCCCcchHHHHHHHHHHHhh
Q 000134 232 ASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFL-LILLVEQLDNPHVTVRMNASRLIRKSCF 310 (2096)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~-l~~Li~~L~~~n~~v~~~A~~~i~~l~~ 310 (2096)
....-....++..+-..+ .-.|..|.+..+..+..|.+-...-.++|..- +-.|..-+.++|.++|.-+|..+.++|+
T Consensus 111 ~~~~~~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~ 189 (503)
T PF10508_consen 111 AAQLLVDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIAS 189 (503)
T ss_pred HHHHhcCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHh
Confidence 011112233555565545 34566699999999999855222121222212 3346666777799999999999999987
Q ss_pred hhcccccccccchhhhhhhhhhHHHHHHhcC
Q 000134 311 FHLKGGCELLVSKAVLICNELFDYLSVRLAS 341 (2096)
Q Consensus 311 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~ 341 (2096)
+....- ... ....+++.+++.+.+
T Consensus 190 ~S~~~~-----~~~--~~sgll~~ll~eL~~ 213 (503)
T PF10508_consen 190 HSPEAA-----EAV--VNSGLLDLLLKELDS 213 (503)
T ss_pred cCHHHH-----HHH--HhccHHHHHHHHhcC
Confidence 763311 010 011256666666666
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=1.4 Score=62.59 Aligned_cols=355 Identities=8% Similarity=-0.034 Sum_probs=201.5
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~ 1124 (2096)
.++.-+++-|-+.+|=..+++-+...++ +..+....+.|+.+|..-+-+|+-.-+..+-..++...+-.
T Consensus 381 q~~~~~~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-- 449 (987)
T PRK09782 381 QLTWQLMQNGQSREAADLLLQRYPFQGD---------ARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQ-- 449 (987)
T ss_pred HHHHHHHHcccHHHHHHHHHHhcCCCcc---------cccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHH--
Confidence 4566678888899999999887653211 11134567799999988777666666554422222222221
Q ss_pred HhhcCHHHHHHH---HHHHHccCCC--chhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHH-HHHHHhcCC
Q 000134 1125 KKSGNWAEVFTS---CEQALQMEPT--SVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQG-VQAAWRLGR 1198 (2096)
Q Consensus 1125 E~~G~W~~A~~~---YE~~Lq~~p~--~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~-vEAAWrlg~ 1198 (2096)
-.|+..+|... +..++...|+ +...+..+-.|+.. |+++..+..........|+.. ..++ ..+.-..|+
T Consensus 450 -~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~---~~L~lA~al~~~Gr 524 (987)
T PRK09782 450 -WQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW---QHRAVAYQAYQVED 524 (987)
T ss_pred -HHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH---HHHHHHHHHHHCCC
Confidence 24455454444 4444555666 67777777788887 777666654444444445422 1221 222346788
Q ss_pred hhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhh
Q 000134 1199 WDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLH 1278 (2096)
Q Consensus 1199 Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH 1278 (2096)
++.-.+........ ++........| ...+..++.....+.+..+... . .+.+...+.....+.
T Consensus 525 ~eeAi~~~rka~~~-------~p~~~a~~~la--~all~~Gd~~eA~~~l~qAL~l-----~---P~~~~l~~~La~~l~ 587 (987)
T PRK09782 525 YATALAAWQKISLH-------DMSNEDLLAAA--NTAQAAGNGAARDRWLQQAEQR-----G---LGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHhcc-------CCCcHHHHHHH--HHHHHCCCHHHHHHHHHHHHhc-----C---CccHHHHHHHHHHHH
Confidence 87665554432210 01111122233 3334455554434333333221 0 111111000000000
Q ss_pred hhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHH
Q 000134 1279 LLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKL 1358 (2096)
Q Consensus 1279 ~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~Akl 1358 (2096)
...+.+++ +-.+++++ .. .+. ...|...|.+
T Consensus 588 ~~Gr~~eA--------------------------------------------l~~~~~AL-~l---~P~-~~a~~~LA~~ 618 (987)
T PRK09782 588 IPGQPELA--------------------------------------------LNDLTRSL-NI---APS-ANAYVARATI 618 (987)
T ss_pred hCCCHHHH--------------------------------------------HHHHHHHH-Hh---CCC-HHHHHHHHHH
Confidence 00111111 11122221 11 112 4678999999
Q ss_pred HHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCC
Q 000134 1359 CRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLP 1436 (2096)
Q Consensus 1359 ARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1436 (2096)
.++.|+++.|..++.+|....+ +.+....+-.+...|+..+|+..++++++..|.
T Consensus 619 l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~----------------------- 675 (987)
T PRK09782 619 YRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD----------------------- 675 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----------------------
Confidence 9999999999999999988764 457778888999999999999999998763221
Q ss_pred cccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCc
Q 000134 1437 VLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGP 1516 (2096)
Q Consensus 1437 ~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~g~ 1516 (2096)
-+.++.-+|.-+...|+ .++....|++|+++.|......+..|......+
T Consensus 676 -------------~~~a~~nLA~al~~lGd--~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~--------------- 725 (987)
T PRK09782 676 -------------DPALIRQLAYVNQRLDD--MAATQHYARLVIDDIDNQALITPLTPEQNQQRF--------------- 725 (987)
T ss_pred -------------CHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHH---------------
Confidence 13345556655555555 788899999999999987766666655443222
Q ss_pred chhhhhchHHHHHHHHHHhhccCCc
Q 000134 1517 SEKRWWFYVPDVLLFYAKGLHRGHK 1541 (2096)
Q Consensus 1517 ~~~~~~~~l~~ai~~Y~~sl~~g~~ 1541 (2096)
+...+.+.|-+...+...
T Consensus 726 -------~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 726 -------NFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred -------HHHHHHHHHHHHhhcCcc
Confidence 234566777777666654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.69 Score=59.44 Aligned_cols=410 Identities=17% Similarity=0.222 Sum_probs=221.3
Q ss_pred cCCCHHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChH-HHHHH-HHHhccCC
Q 000134 1039 SAIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPD-GLSGL-ARLHKSLS 1116 (2096)
Q Consensus 1039 ~~Ip~~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpD-gl~Gi-~~~~~~~s 1116 (2096)
.+.+...||.+-++-+.|..|.-|.-.-.++...+ .+.+-.|-.||.+..+.| +..|. ++++..+.
T Consensus 47 ~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~------------~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q 114 (966)
T KOG4626|consen 47 GSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTN------------TERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ 114 (966)
T ss_pred cchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCc------------ccceeeehhhhhcccchhhhhhhhhhhhhccch
Confidence 45567789999999999999999888766543211 123446778999998888 44554 34555544
Q ss_pred hhHH----HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhh-----------
Q 000134 1117 LQDE----LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQY----------- 1181 (2096)
Q Consensus 1117 l~~q----il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~----------- 1181 (2096)
..+. .-.+..-|+.++|+..|+.+++..|+.++.++|+--||..-|......+....-+.-.|+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 3332 2345677999999999999999999999999999999887776554333222111222210
Q ss_pred --------hhhHhHHHHHH------HHh-cC--------ChhhHHHhhcccCccCccccCCCCC-cchhHHHHHHHHHHH
Q 000134 1182 --------KKTWCMQGVQA------AWR-LG--------RWDLMDEYLSGADEEGLLCSSSESN-ASFDMDVAKILQAMM 1237 (2096)
Q Consensus 1182 --------~~~~~~~~vEA------AWr-lg--------~Wd~l~~~l~~~~~~gl~~~~~~~~-~~f~~~l~kaL~al~ 1237 (2096)
.+.-+.-++|+ ||. || -|.-+..|-.... -+++ ..-.+++|..+..++
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--------ldP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--------LDPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--------CCCcchHHHhhHHHHHHHHh
Confidence 00011112221 331 11 1444433322211 0111 122345555555444
Q ss_pred ccCchhHHHHHH-HHHHHhhhhhhccch-----hhHHhhhHHHHHhhhhhHHHHHHHhhhccccccccCCCChHHHHHHH
Q 000134 1238 KKDHFSVSDKIG-VSKQVLIAPLAAAGM-----DSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLM 1311 (2096)
Q Consensus 1238 ~~d~~~f~~~i~-~aR~~l~~~Lsa~~~-----eSy~r~y~~l~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~ 1311 (2096)
.-| +.+. -.|.....+..+..- .-|.+ .+ |+.++..-.+--. .+ +.+..-.
T Consensus 267 ~~d-----~Avs~Y~rAl~lrpn~A~a~gNla~iYyeq---------G~--ldlAI~~Ykral~-~~------P~F~~Ay 323 (966)
T KOG4626|consen 267 IFD-----RAVSCYLRALNLRPNHAVAHGNLACIYYEQ---------GL--LDLAIDTYKRALE-LQ------PNFPDAY 323 (966)
T ss_pred cch-----HHHHHHHHHHhcCCcchhhccceEEEEecc---------cc--HHHHHHHHHHHHh-cC------CCchHHH
Confidence 322 1111 112222222221110 01111 11 1111111000000 00 0111112
Q ss_pred HHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHH
Q 000134 1312 ANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAK 1389 (2096)
Q Consensus 1312 ~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AK 1389 (2096)
.++..-|.-.++- -|-.=.--++ +. +....++..-..+.+-|..|.++.|.+--+.|....+ ..++=--|-
T Consensus 324 ~NlanALkd~G~V---~ea~~cYnka-L~---l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~ 396 (966)
T KOG4626|consen 324 NNLANALKDKGSV---TEAVDCYNKA-LR---LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLAS 396 (966)
T ss_pred hHHHHHHHhccch---HHHHHHHHHH-HH---hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHH
Confidence 2222222222211 1100000010 10 1122344556778888888999888887777765532 234445567
Q ss_pred HHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCH
Q 000134 1390 LLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQK 1469 (2096)
Q Consensus 1390 LLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~ 1469 (2096)
++-++|+-.+||.+-+.++.- .+..|.++--+|.-+-+.|. .
T Consensus 397 i~kqqgnl~~Ai~~YkealrI------------------------------------~P~fAda~~NmGnt~ke~g~--v 438 (966)
T KOG4626|consen 397 IYKQQGNLDDAIMCYKEALRI------------------------------------KPTFADALSNMGNTYKEMGD--V 438 (966)
T ss_pred HHHhcccHHHHHHHHHHHHhc------------------------------------CchHHHHHHhcchHHHHhhh--H
Confidence 788888889999888887641 12335566666655555553 6
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc--hhhhH
Q 000134 1470 EDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN--LFQAL 1547 (2096)
Q Consensus 1470 ~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~--~~q~l 1547 (2096)
++.+.-|..|++.+|....+|-.||.-|. | .| .+..||..|-.+|...+++ .++-+
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~k----D----------sG--------ni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYK----D----------SG--------NIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhh----c----------cC--------CcHHHHHHHHHHHccCCCCchhhhHH
Confidence 77889999999999999999988887653 1 11 3567999999999988764 44433
Q ss_pred H---HHHHhhhhcC
Q 000134 1548 P---RLLTLWFDFG 1558 (2096)
Q Consensus 1548 p---RlLtLWl~~g 1558 (2096)
. .++.-|.|+.
T Consensus 497 lh~lq~vcdw~D~d 510 (966)
T KOG4626|consen 497 LHCLQIVCDWTDYD 510 (966)
T ss_pred HHHHHHHhcccchH
Confidence 2 4455576654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=3.5 Score=57.64 Aligned_cols=380 Identities=10% Similarity=-0.005 Sum_probs=205.2
Q ss_pred HHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----hhHH
Q 000134 1047 ARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQDE 1120 (2096)
Q Consensus 1047 A~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l~~q 1120 (2096)
.+.|..-|.+..|+-.++...... | .....+..|..+|...++.+...-.+.. ...+. ....
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~-----~-------~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHM-----Q-------LPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-----C-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 356777889999998888765411 1 0123477889999999999887777653 12222 1123
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd 1200 (2096)
+..+-..|+.++|+..++++++..|++.. +..+-.++...|+++..+...+......|+....+..+ ..+.-..|.-+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~l-a~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEY-VQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHCCChH
Confidence 45667899999999999999999999988 77788888899999988888877777777654433332 33444555555
Q ss_pred hHHHhhcccCccCccccCCCCCc------chhHHHHHHHHHHHccCchhH---HHHHHHHHHHhhhhhhcc--chhhHHh
Q 000134 1201 LMDEYLSGADEEGLLCSSSESNA------SFDMDVAKILQAMMKKDHFSV---SDKIGVSKQVLIAPLAAA--GMDSYTR 1269 (2096)
Q Consensus 1201 ~l~~~l~~~~~~gl~~~~~~~~~------~f~~~l~kaL~al~~~d~~~f---~~~i~~aR~~l~~~Lsa~--~~eSy~r 1269 (2096)
.--+.+...... ++. .......++.......+...+ .+.++.... +....... ....|.+
T Consensus 168 ~Al~~l~~~~~~--------p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~-ll~~~~~~p~~~~~~~~ 238 (765)
T PRK10049 168 PALGAIDDANLT--------PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDA-LEALWHDNPDATADYQR 238 (765)
T ss_pred HHHHHHHhCCCC--------HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHH-HHhhcccCCccchHHHH
Confidence 322222221110 000 001111111110000111112 122222211 11111111 1123444
Q ss_pred hh-HHHHHhhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCC-ch
Q 000134 1270 AY-PFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLG-AE 1347 (2096)
Q Consensus 1270 ~y-~~l~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~-~~ 1347 (2096)
++ +.+..|-...+.+++........ ... ...+. ....|-..+..-..++ -+-+-.++++ +...... ..
T Consensus 239 a~~d~l~~Ll~~g~~~eA~~~~~~ll--~~~--~~~P~---~a~~~la~~yl~~g~~--e~A~~~l~~~-l~~~p~~~~~ 308 (765)
T PRK10049 239 ARIDRLGALLARDRYKDVISEYQRLK--AEG--QIIPP---WAQRWVASAYLKLHQP--EKAQSILTEL-FYHPETIADL 308 (765)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhh--ccC--CCCCH---HHHHHHHHHHHhcCCc--HHHHHHHHHH-hhcCCCCCCC
Confidence 32 11222222233444443332100 000 00011 0111211111111221 1122223442 2222111 01
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC------------C-----hHHHHHHHHHHHcCCchHHHHHHHHHhhc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGA------------P-----NVHMEKAKLLWSTRRSDGAIAELQQNLLN 1410 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~~------------~-----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~ 1410 (2096)
....+...+....+.|+++.|...+.++....+ | .+..-.|.++-..|+..+|+..+++++..
T Consensus 309 ~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 309 SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 123455556666899999999999887765432 1 24567889999999999999999998763
Q ss_pred CCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHH
Q 000134 1411 KPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGY 1490 (2096)
Q Consensus 1411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~ 1490 (2096)
.| .+ ..+++.+|.-+...|+ .++.++.|++|.++.|.-...+
T Consensus 389 ~P-------------------~n-----------------~~l~~~lA~l~~~~g~--~~~A~~~l~~al~l~Pd~~~l~ 430 (765)
T PRK10049 389 AP-------------------GN-----------------QGLRIDYASVLQARGW--PRAAENELKKAEVLEPRNINLE 430 (765)
T ss_pred CC-------------------CC-----------------HHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCCChHHH
Confidence 22 11 2245555555544554 7899999999999999987777
Q ss_pred HHHHhhh
Q 000134 1491 FYMAKYC 1497 (2096)
Q Consensus 1491 ~~la~y~ 1497 (2096)
+..|.-+
T Consensus 431 ~~~a~~a 437 (765)
T PRK10049 431 VEQAWTA 437 (765)
T ss_pred HHHHHHH
Confidence 7776643
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=96.61 E-value=2.8 Score=54.14 Aligned_cols=60 Identities=18% Similarity=-0.012 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHH--Hhhc-CCChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1350 NCWLQYAKLCRLAGHYETATRAILE--AQAS-GAPNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~all~--a~~~-~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
......++++-+.|.++.|...+.+ +.+. +++......|.++|+.|++.+|.++.++++.
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5567889999999999999999995 4333 3445667899999999999999999998765
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0075 Score=67.30 Aligned_cols=92 Identities=24% Similarity=0.280 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhhhccccchhhHHHHHHHhhcccCccCcccccccccc-------c----c------cccc--cChhhHHH
Q 000134 707 TLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQ-------R----F------KIEC--SDDDLIFE 767 (2096)
Q Consensus 707 ~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~r~~~~~~~-------~----~------~~~~--~~~~f~~~ 767 (2096)
+|+..|++..+.. . +..+++.+.+|||.||||||-+....... + . .... +.++|...
T Consensus 10 ~LL~~L~~iLk~e-~---s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~y~~ 85 (160)
T PF11865_consen 10 ELLDILLNILKTE-Q---SQSIRREALRVLGILGALDPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEYYPT 85 (160)
T ss_pred HHHHHHHHHHHhC-C---CHHHHHHHHHHhhhccccCcHHHhcccccCCccccccccccchhhHHhhccCCCchHHHHHH
Confidence 5666666655543 2 26899999999999999999999732110 0 0 0111 45666666
Q ss_pred HHHHHHHHHHHcCCChhhHhHHHHHHHHHHHHcCC
Q 000134 768 LIDKHLARAFRAAPDTIIQDSAALAIQELLKIAGC 802 (2096)
Q Consensus 768 ll~~~Lv~af~s~~dt~~Q~~~A~AiQElLk~~~~ 802 (2096)
..-+.|.+.+.-.+-+..+..+..||-.+++..|+
T Consensus 86 vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~ 120 (160)
T PF11865_consen 86 VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGL 120 (160)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCc
Confidence 55577888888888888777666666666655444
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.18 E-value=7.8 Score=51.50 Aligned_cols=171 Identities=19% Similarity=0.271 Sum_probs=101.4
Q ss_pred CChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhh
Q 000134 511 EDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIP 590 (2096)
Q Consensus 511 ~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip 590 (2096)
.+...|+.++.+|+.+.....+....+..-++..|..+ + ....-.+|..+...+... |+.-+. ++..++.
T Consensus 352 ~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~----~-~~~~~~~~~~i~~ll~~~-~~~~~~----~l~~L~~ 421 (526)
T PF01602_consen 352 SDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEIS----G-DYVSNEIINVIRDLLSNN-PELREK----ILKKLIE 421 (526)
T ss_dssp --HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCT----G-GGCHCHHHHHHHHHHHHS-TTTHHH----HHHHHHH
T ss_pred cchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhc----c-ccccchHHHHHHHHhhcC-hhhhHH----HHHHHHH
Confidence 35668889999999988887544444444444444432 1 234557788877776542 222222 2333344
Q ss_pred ccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChh
Q 000134 591 FLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLN 670 (2096)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~ 670 (2096)
+++... . ..+....=+++-|..+...+ .. ...+.++.++++...|+..
T Consensus 422 ~l~~~~-~-----~~~~~~~~wilGEy~~~~~~-------------------------~~-~~~~~~~~l~~~~~~~~~~ 469 (526)
T PF01602_consen 422 LLEDIS-S-----PEALAAAIWILGEYGELIEN-------------------------TE-SAPDILRSLIENFIEESPE 469 (526)
T ss_dssp HHTSSS-S-----HHHHHHHHHHHHHHCHHHTT-------------------------TT-HHHHHHHHHHHHHTTSHHH
T ss_pred HHHHhh-H-----HHHHHHHHhhhcccCCcccc-------------------------cc-cHHHHHHHHHHhhccccHH
Confidence 443221 1 23455555666665554432 11 3456677788888888999
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhccc
Q 000134 671 VRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGAL 739 (2096)
Q Consensus 671 Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~I 739 (2096)
|+.+.++.+.++..+..+ . .....++..++..|...+. +.+++..|-++++++
T Consensus 470 vk~~ilt~~~Kl~~~~~~-----------~--~~~~~i~~~~~~~~~~~s~---~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 470 VKLQILTALAKLFKRNPE-----------N--EVQNEILQFLLSLATEDSS---DPEVRDRAREYLRLL 522 (526)
T ss_dssp HHHHHHHHHHHHHHHSCS-----------T--THHHHHHHHHHCHHHHS-S---SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCc-----------h--hhHHHHHHHHHHHhccCCC---CHHHHHHHHHHHHHH
Confidence 999999999988754431 0 1233566666666663222 368999999998876
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.04 E-value=10 Score=52.92 Aligned_cols=291 Identities=17% Similarity=0.215 Sum_probs=163.5
Q ss_pred CCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhc---c---ccccchhhHHHHHHHHhcCCCcchhh
Q 000134 485 NEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIG---S---HLTTYVPKILVLLMHAINKESLQCEG 558 (2096)
Q Consensus 485 ~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g---~---~v~~~~pqI~a~L~~aL~~~~L~~~~ 558 (2096)
++.++.=+++|+.-+..-|..+|..+.+. .|.-++++++.++...- . +....+|.++-.|+..+...+ ...+
T Consensus 146 ~~~~~~~~~~~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d-~~~a 223 (1075)
T KOG2171|consen 146 PETFGNTLQPHLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGD-DDAA 223 (1075)
T ss_pred hhhhccccchhHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccc-hHHH
Confidence 34555667888888999999998776555 89999999999999983 2 566778999999999997554 2345
Q ss_pred hHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHh---hcccC-------
Q 000134 559 LSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQ---HIHEF------- 628 (2096)
Q Consensus 559 l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~---~i~~l------- 628 (2096)
.++...|+..+. .+|.-+++++++|+..-+....... -...+|..|.+++-.+..--..+.+. +++.|
T Consensus 224 ~~~l~~l~El~e-~~pk~l~~~l~~ii~~~l~Ia~n~~-l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~ 301 (1075)
T KOG2171|consen 224 KSALEALIELLE-SEPKLLRPHLSQIIQFSLEIAKNKE-LENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAM 301 (1075)
T ss_pred HHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHHhhccc-ccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHh
Confidence 666667766654 3577899999999998887775332 22346778888777765442222221 12221
Q ss_pred -CCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccC-CC-hhHHHHHHHHHHHHHhhc-----HHHHHH-HHhccCC
Q 000134 629 -PLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNH-EN-LNVRYMVVCELSKLLKLK-----SEDVTA-LINGEAC 699 (2096)
Q Consensus 629 -p~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~-en-~~Vr~~aL~eL~~~L~~~-----~~~l~~-~~~~e~~ 699 (2096)
+.+.+-++..+-. .+.+--+. +....=...++|+.. -+ ..|....+..+..+|..- +..+.+ ...+|+.
T Consensus 302 mte~~~D~ew~~~d-~~ded~~~-~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc 379 (1075)
T KOG2171|consen 302 MTEEEDDDEWSNED-DLDEDDEE-TPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGC 379 (1075)
T ss_pred cCCcccchhhcccc-cccccccc-CcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccc
Confidence 1111111110000 00000000 000000112222221 11 233444445555555421 111221 2334544
Q ss_pred CC--chhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCccCcccccccccccccccccChhhHHHHHHHHHHHHH
Q 000134 700 SD--LDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAF 777 (2096)
Q Consensus 700 ~~--~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~r~~~~~~~~~~~~~~~~~f~~~ll~~~Lv~af 777 (2096)
.+ .+.+.+++.-.+.+..+ ..++++.+|--|+|.+-. - +.-+-..+....+-..|+...
T Consensus 380 ~~~m~~~l~~Il~~Vl~~l~D-----phprVr~AA~naigQ~st----d----------l~p~iqk~~~e~l~~aL~~~l 440 (1075)
T KOG2171|consen 380 SDVMIGNLPKILPIVLNGLND-----PHPRVRYAALNAIGQMST----D----------LQPEIQKKHHERLPPALIALL 440 (1075)
T ss_pred HHHHHHHHHHHHHHHHhhcCC-----CCHHHHHHHHHHHHhhhh----h----------hcHHHHHHHHHhccHHHHHHh
Confidence 32 12334444444444443 247999999999997521 0 000111122333334466677
Q ss_pred HcCCChhhHhHHHHHHHHHHHHc
Q 000134 778 RAAPDTIIQDSAALAIQELLKIA 800 (2096)
Q Consensus 778 ~s~~dt~~Q~~~A~AiQElLk~~ 800 (2096)
-++.+++.|-.+|-|+=+++..|
T Consensus 441 d~~~~~rV~ahAa~al~nf~E~~ 463 (1075)
T KOG2171|consen 441 DSTQNVRVQAHAAAALVNFSEEC 463 (1075)
T ss_pred cccCchHHHHHHHHHHHHHHHhC
Confidence 77899999999999999998875
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=8 Score=58.00 Aligned_cols=465 Identities=15% Similarity=0.106 Sum_probs=239.7
Q ss_pred ccchhhHHHHHHHHHHccCCchh-hhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh-hh-hhhhhccCcccccchh
Q 000134 161 SEEVQLSCVRVIRRILVHGTRDV-LLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ-DT-VLSSLFLDENASSRSN 237 (2096)
Q Consensus 161 ~~~v~~~~~~~l~~il~h~~~~~-~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~ 237 (2096)
..++|...+.+|.-++.|+.... .+.. ..-+.+|-.+|.+++..+|..+++.++.+.. +. .-..+.+
T Consensus 417 ~~evQ~~Av~aL~~L~~~~~e~~~aIi~-~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIie--------- 486 (2102)
T PLN03200 417 TADVQEELIRALSSLCCGKGGLWEALGG-REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITA--------- 486 (2102)
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH---------
Confidence 46899999999999998866331 1111 1123455556689999999999999987540 00 0001111
Q ss_pred hHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccch-hHH--HHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcc
Q 000134 238 ELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQ-HFL--FLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLK 314 (2096)
Q Consensus 238 ~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e-~~~--~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~ 314 (2096)
-..+-.+-+.+. ..|+.++|-..-+++-|.. ...+.. ++. -++-.|++.|.+.++-++..|..-|.+++..-..
T Consensus 487 -aGaIP~LV~LL~-s~~~~iqeeAawAL~NLa~-~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~ 563 (2102)
T PLN03200 487 -AGGIPPLVQLLE-TGSQKAKEDSATVLWNLCC-HSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA 563 (2102)
T ss_pred -CCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhC-CcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch
Confidence 122344455444 4567799998888888843 111111 111 2355689999999999999999999888554221
Q ss_pred cccccccchhhhhhhhhhHHHHHHhc-CchHHHHHHHH---HHhCCC-hHHHHHhh--cccccchhhhccccChh-----
Q 000134 315 GGCELLVSKAVLICNELFDYLSVRLA-SRPIMVREFAE---AAFGVE-TEELVKKM--IPAVLPKLVVSQQDNDQ----- 382 (2096)
Q Consensus 315 ~~~~l~~~~~~~~~~~l~~~~~~~l~-~rp~~~~~~~e---~llg~~-~~~fL~~~--~~~~LP~LVl~~~~~~~----- 382 (2096)
. .+ ..++.-|. ..|.+.....+ .++.+. -+++.... ..-.+|.|+---+....
T Consensus 564 ~----------~I-----~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~ 628 (2102)
T PLN03200 564 A----------TI-----SQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEK 628 (2102)
T ss_pred h----------HH-----HHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHH
Confidence 1 11 11221121 22222222111 122222 22323221 23477777764322211
Q ss_pred HHHHHHHHHHHcCCCchhHHh-hhHHHHHHHHhcccc--HHHHHHHHHHHhhhcCCC-hHHHHH-HhhHHHHHHHHHhhc
Q 000134 383 AVNIINELAKCLNTDMVPLIV-TWIPKVLAFALHQAD--ERRLLSALEFYCIQTGSD-NQEIFA-AALPALLDELICFVD 457 (2096)
Q Consensus 383 ~~~~i~~ia~~~~~~~~~l~~-~~~~~Ila~ll~~~~--~~~~~~~l~~~~~~~~~~-~~~~~~-~~~~~~l~eLl~~~~ 457 (2096)
+..+|..|+...+.-...++. +-+|.++.+|-.... ..+.+.+|..+......+ ...++. .++|.++ +|+ .
T Consensus 629 Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~-~LL---~ 704 (2102)
T PLN03200 629 AASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLI-KLA---K 704 (2102)
T ss_pred HHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHH-HHH---h
Confidence 334555555533333344443 355555555544333 345667776666422211 123344 3556655 554 3
Q ss_pred CCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHh-------
Q 000134 458 GGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMI------- 530 (2096)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~------- 530 (2096)
..|.+. +..++..++.+...++.-..+.+...+..+..+= ......-|+.|-.+|..|.+-.
T Consensus 705 ~~d~~v-------~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lL----r~G~~~~k~~Aa~AL~~L~~~~~~~~~~~ 773 (2102)
T PLN03200 705 SSSIEV-------AEQAVCALANLLSDPEVAAEALAEDIILPLTRVL----REGTLEGKRNAARALAQLLKHFPVDDVLK 773 (2102)
T ss_pred CCChHH-------HHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHH----HhCChHHHHHHHHHHHHHHhCCChhHHHH
Confidence 333322 2345555666777777677777665555444432 3344556777777666654311
Q ss_pred cc-ccccchhhHHHHHHHHhcCCCcchh----hhH-----------------HHHHHHHHhccCCCcchhhHHHHHHHHh
Q 000134 531 GS-HLTTYVPKILVLLMHAINKESLQCE----GLS-----------------VLHFFIEQLSRVSPSSTKHVISQVFAAL 588 (2096)
Q Consensus 531 g~-~v~~~~pqI~a~L~~aL~~~~L~~~----~l~-----------------~W~~fv~~L~~~~~~~l~~ll~~i~~~l 588 (2096)
+. +-..+..-++.+|.+. ++... ++. -|..|+.. |+.++|++.-+
T Consensus 774 ~~~~~~g~v~~l~~~L~~~----~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~-----p~~l~~l~~~l---- 840 (2102)
T PLN03200 774 DSVQCRGTVLALVDLLNST----DLDSSATSEALEALALLARTKGGANFSHPPWAVLAEV-----PSSLEPLVRCL---- 840 (2102)
T ss_pred HHHHHhCcHHHHHHHHhcC----CcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhc-----cCchHHHHHHH----
Confidence 11 1122333333333322 22221 222 34444432 45555544322
Q ss_pred hhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHH-hhccCC
Q 000134 589 IPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAV-DGLNHE 667 (2096)
Q Consensus 589 ip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~-~~l~~e 667 (2096)
. +.....+++|.+||+.|-.+....|++.+..-+- .| ..++ |.+++.
T Consensus 841 ----~---~~~p~~~~kai~il~~~~~~~~~~~~~~~~~~~~--~~-----------------------~~~~~~~~~~~ 888 (2102)
T PLN03200 841 ----A---EGHPLVQDKAIEILSRLCRDQPVVLGDLIANASK--CI-----------------------SSLADRIINSS 888 (2102)
T ss_pred ----H---cCChHHHHHHHHHHHHHhccChhHHHHHHhcccc--hH-----------------------HHHHHHHhhcC
Confidence 1 2222457999999999988888888877644321 11 1222 334566
Q ss_pred ChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhh
Q 000134 668 NLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAE 718 (2096)
Q Consensus 668 n~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~ 718 (2096)
|+.|+.-+-.-|----+.|+....+.+ .+ ......||.+|++-...
T Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~ 934 (2102)
T PLN03200 889 SLEVKIGGTALLICAAKEHRQLVMEAL-DE----SGYLKLLIQALVDMLKQ 934 (2102)
T ss_pred CceEEecchhhhhhhhhhhHHHHHHHH-Hh----hccHHHHHHHHHHHHhc
Confidence 777777666555555555554332222 11 13566788888776543
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=14 Score=51.08 Aligned_cols=144 Identities=17% Similarity=0.096 Sum_probs=88.8
Q ss_pred ChhhHHHHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhh
Q 000134 144 DFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVL 223 (2096)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~ 223 (2096)
|++.+.+-+.+++-.. .-+++--|+--|-+..+-.++..++ -+-.+..=+.|++..+|-.|=|++.++-.
T Consensus 65 DvS~LF~dVvk~~~S~-d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~---- 134 (746)
T PTZ00429 65 DVSYLFVDVVKLAPST-DLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRV---- 134 (746)
T ss_pred CchHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc----
Confidence 3444444444433222 3444444555555554432222211 12344444589999999999998888541
Q ss_pred hhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHH--HHHHHHHhhCCCCcchHHHH
Q 000134 224 SSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLF--LLILLVEQLDNPHVTVRMNA 301 (2096)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~--~l~~Li~~L~~~n~~v~~~A 301 (2096)
...-+.++.-+++.+.+ ++|-|.=|...+++.|.. ...|++.- -+-.|.+.|..+|+.|.+.|
T Consensus 135 -----------~~i~e~l~~~lkk~L~D-~~pYVRKtAalai~Kly~---~~pelv~~~~~~~~L~~LL~D~dp~Vv~nA 199 (746)
T PTZ00429 135 -----------SSVLEYTLEPLRRAVAD-PDPYVRKTAAMGLGKLFH---DDMQLFYQQDFKKDLVELLNDNNPVVASNA 199 (746)
T ss_pred -----------HHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHh---hCcccccccchHHHHHHHhcCCCccHHHHH
Confidence 22235566677887765 668899999999999854 23333210 12346777899999999999
Q ss_pred HHHHHHHhhhh
Q 000134 302 SRLIRKSCFFH 312 (2096)
Q Consensus 302 ~~~i~~l~~~~ 312 (2096)
..-+..++...
T Consensus 200 l~aL~eI~~~~ 210 (746)
T PTZ00429 200 AAIVCEVNDYG 210 (746)
T ss_pred HHHHHHHHHhC
Confidence 99999986543
|
|
| >KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.48 E-value=7.6 Score=51.02 Aligned_cols=394 Identities=15% Similarity=0.149 Sum_probs=193.8
Q ss_pred hhhHHHHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhh
Q 000134 145 FSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLS 224 (2096)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~ 224 (2096)
--++++.|...|-...-..++=+++....-.-.|+-.+ +.++..+-.+-++-+ .-|.+.||.|+..-++..+
T Consensus 53 v~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~-d~~~~~~~~~~~~~~-~tps~~~q~~~~~~l~~~~------ 124 (569)
T KOG1242|consen 53 VLNLKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIV-DPRPISIIEILLEEL-DTPSKSVQRAVSTCLPPLV------ 124 (569)
T ss_pred HHHHHHHHHHHhccchhHHHhhhhHHHHHHHHHhcccc-CcchhHHHHHHHHhc-CCCcHHHHHHHHHHhhhHH------
Confidence 34577777777766666666666665555555666533 222222232444545 8899999999999888864
Q ss_pred hhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHH
Q 000134 225 SLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRL 304 (2096)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~ 304 (2096)
-..+ ......++..+-+.++.++-..-..---.-.|- .++-.+..+-=.-.+.-|-+.....++..+.-+--.
T Consensus 125 ~~~~------~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~-v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~ 197 (569)
T KOG1242|consen 125 VLSK------GLSGEYVLELLLELLTSTKIAERAGAAYGLAGL-VNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALL 197 (569)
T ss_pred HHhh------ccCHHHHHHHHHHHhccccHHHHhhhhHHHHHH-HcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHH
Confidence 1111 112233444444444422211111111111111 111111111111233445555666666555532222
Q ss_pred HHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcCchHHHHHHHH----H----HhCCChHHHHHhhcccccchhhhc
Q 000134 305 IRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAE----A----AFGVETEELVKKMIPAVLPKLVVS 376 (2096)
Q Consensus 305 i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~rp~~~~~~~e----~----llg~~~~~fL~~~~~~~LP~LVl~ 376 (2096)
....+..+ .| ..+.+|..++ ++-+..++-.+-.-+|+-|. + +-...|..|| |+.|+-+.-.
T Consensus 198 a~~~~~~~-Lg--~~~EPyiv~~----lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~ll----psll~~l~~~ 266 (569)
T KOG1242|consen 198 AFEAAQGN-LG--PPFEPYIVPI----LPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLL----PSLLGSLLEA 266 (569)
T ss_pred HHHHHHHh-cC--CCCCchHHhh----HHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhh----hhhHHHHHHH
Confidence 22222222 22 2355666544 34444444333333333222 1 2222233222 2233333322
Q ss_pred c-ccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccHH---HHHHHHHHHhhhcCCChHHHHHHhhHHHHHHH
Q 000134 377 Q-QDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADER---RLLSALEFYCIQTGSDNQEIFAAALPALLDEL 452 (2096)
Q Consensus 377 ~-~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~eL 452 (2096)
+ +....+++.+..+|.+..+-+..++-+=.|.+ +-.+.-..++ ..-.||.-+... ++..+ +....|.+++-
T Consensus 267 kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~l-sevl~DT~~evr~a~~~~l~~~~sv--idN~d-I~~~ip~Lld~- 341 (569)
T KOG1242|consen 267 KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVL-SEVLWDTKPEVRKAGIETLLKFGSV--IDNPD-IQKIIPTLLDA- 341 (569)
T ss_pred hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHH-HHHHccCCHHHHHHHHHHHHHHHHh--hccHH-HHHHHHHHHHH-
Confidence 1 11112345555555554443333332222222 2223221222 222333222211 12222 33345555542
Q ss_pred HHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHh-c
Q 000134 453 ICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMI-G 531 (2096)
Q Consensus 453 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~-g 531 (2096)
+++ +. .+....++.+. ...+-.|..+-=|.||.-+=..=++..+...||++..-++.|-++. -
T Consensus 342 ---l~d--p~------~~~~e~~~~L~-----~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveD 405 (569)
T KOG1242|consen 342 ---LAD--PS------CYTPECLDSLG-----ATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVED 405 (569)
T ss_pred ---hcC--cc------cchHHHHHhhc-----ceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcC
Confidence 233 21 12334444433 2334445555566676655433334456778899999999999999 4
Q ss_pred c-ccccchhhHHHHHHHHhc--CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHH
Q 000134 532 S-HLTTYVPKILVLLMHAIN--KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVF 585 (2096)
Q Consensus 532 ~-~v~~~~pqI~a~L~~aL~--~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~ 585 (2096)
+ -+.+|+|+++=.|+..+. .|+.|..+.++...+++.+.++.-.++.|.+....
T Consensus 406 p~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~ 462 (569)
T KOG1242|consen 406 PKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSFDDLIPELSETL 462 (569)
T ss_pred HHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhh
Confidence 4 799999999999998875 58999999999999999987654445555555444
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.47 E-value=6.8 Score=52.05 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=47.6
Q ss_pred hhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHH
Q 000134 250 TAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKS 308 (2096)
Q Consensus 250 ~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l 308 (2096)
.+.+|+.++=..-+.+..+ ...+.|+..++.=.|..-|.++|+.+|+.|.+-+.++
T Consensus 51 ~~s~~~~~Krl~yl~l~~~---~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i 106 (526)
T PF01602_consen 51 ISSKDLELKRLGYLYLSLY---LHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNI 106 (526)
T ss_dssp CSSSSHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHH---hhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhh
Confidence 3489999999999999987 3457777767777799999999999999999999888
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.30 E-value=4.9 Score=53.56 Aligned_cols=356 Identities=13% Similarity=0.111 Sum_probs=192.5
Q ss_pred hhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHH----HHHHHHHhhhcCChhHHHHHHHHHHHHHhhh--
Q 000134 199 LLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKL----LDVIKLAFTAADDPLILETLLESTAELMMAV-- 272 (2096)
Q Consensus 199 ~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~-- 272 (2096)
+.+||..=|+|+..+..+.+ ++.+.-+...+ +--|-..+. -+.-.+++|.=-|+|+|....
T Consensus 373 i~~pdwr~reaavmAFGSIl------------~gp~~~~Lt~iV~qalp~ii~lm~-D~sl~VkdTaAwtlgrI~d~l~e 439 (859)
T KOG1241|consen 373 IQNPDWRNREAAVMAFGSIL------------EGPEPDKLTPIVIQALPSIINLMS-DPSLWVKDTAAWTLGRIADFLPE 439 (859)
T ss_pred cCCcchhhhhHHHHHHHhhh------------cCCchhhhhHHHhhhhHHHHHHhc-CchhhhcchHHHHHHHHHhhchh
Confidence 48999999999999999987 22222222221 112222222 233457889999999996433
Q ss_pred c-ccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcCchHH------
Q 000134 273 D-VHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIM------ 345 (2096)
Q Consensus 273 ~-~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~rp~~------ 345 (2096)
. ++.+..-..+..|++-| +.+|-|+.++..-+.++|++.-..+- +++-+.+....|++++..|+.-.+.
T Consensus 440 ~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea~~eA~~---s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqs 515 (859)
T KOG1241|consen 440 AIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEAAYEAAV---SNGQTDPATPFYEAIIGSLLKVTDRADGNQS 515 (859)
T ss_pred hcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHHHHHhcc---CCCCCCccchhHHHHHHHHHhhccccccchh
Confidence 2 33444444455566666 45699999999999999988755422 2223333345688888887622211
Q ss_pred ------HHHHHHHHhCCChHHHHHhhcccccchhhhccccChhHHHHHH----HHHHHcCC-CchhHHhhhHHHHHHHHh
Q 000134 346 ------VREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIIN----ELAKCLNT-DMVPLIVTWIPKVLAFAL 414 (2096)
Q Consensus 346 ------~~~~~e~llg~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~----~ia~~~~~-~~~~l~~~~~~~Ila~ll 414 (2096)
=..+.| +...++++-....+..++=-+. |-+ ++|. ..+..-+- +++.++.+.+..|+.-+=
T Consensus 516 NLR~AAYeALmE-lIk~st~~vy~~v~~~~l~il~---kl~----q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~ 587 (859)
T KOG1241|consen 516 NLRSAAYEALME-LIKNSTDDVYPMVQKLTLVILE---KLD----QTISSQILSLADRAQLNELQSLLCNTLQSIIRKVG 587 (859)
T ss_pred hHHHHHHHHHHH-HHHcCcHHHHHHHHHHHHHHHH---HHH----HHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 223333 5555555544433222221111 111 1222 11211111 256666677777766554
Q ss_pred c--cccHHHHHHHH-HHHhhhcCC--ChHHH--------------HHHhhHHHHHHHHHhhcCCCchhHhhhhcchhHHH
Q 000134 415 H--QADERRLLSAL-EFYCIQTGS--DNQEI--------------FAAALPALLDELICFVDGGDSDEINERLNRVPRVI 475 (2096)
Q Consensus 415 ~--~~~~~~~~~~l-~~~~~~~~~--~~~~~--------------~~~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~ 475 (2096)
. .+..+.++..+ ..+.+ +++ -..+. |....|.+.-=|++ |..+.+|.--.. -++
T Consensus 588 ~~~~~~~d~iM~lflri~~s-~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~--gL~n~~e~qVc~----~aV 660 (859)
T KOG1241|consen 588 SDIREVSDQIMGLFLRIFES-KRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLM--GLSNFQEYQVCA----AAV 660 (859)
T ss_pred ccchhHHHHHHHHHHHHHcC-CccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--HhhcchHHHHHH----HHH
Confidence 3 11123333322 22222 111 12222 23333333332222 222222211000 011
Q ss_pred HHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCC-ChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHh--cC-
Q 000134 476 RKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAE-DLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAI--NK- 551 (2096)
Q Consensus 476 ~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~-~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL--~~- 551 (2096)
--++.+ ...+.+=+.++-=++|+.+-..+.++. .-..|=..|-.+|.+---+|.+--+++--||.+||.|= +-
T Consensus 661 glVgdl---~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d 737 (859)
T KOG1241|consen 661 GLVGDL---ARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLEMVMPLLQQASSVQTD 737 (859)
T ss_pred HHHHHH---HHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCC
Confidence 111100 123445566677778888776665542 12245567888999888889999999999999999775 21
Q ss_pred ----------CCcchhhhHHHHHHHHHhcc-CCCcchhhHHHHHHHHhh
Q 000134 552 ----------ESLQCEGLSVLHFFIEQLSR-VSPSSTKHVISQVFAALI 589 (2096)
Q Consensus 552 ----------~~L~~~~l~~W~~fv~~L~~-~~~~~l~~ll~~i~~~li 589 (2096)
++||+.++.+..-.++-|.. .++..+.|++..||..+=
T Consensus 738 ~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi~ 786 (859)
T KOG1241|consen 738 PADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFID 786 (859)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHHH
Confidence 36899999999998888862 123456688887776653
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=95.27 E-value=5.7 Score=52.68 Aligned_cols=157 Identities=18% Similarity=0.209 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGAP--NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~~~--~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~ 1425 (2096)
..+..+-=||+-.++|.++.|..++-.|..+... ...-.-||.+-.-|+..+|.+++.-......
T Consensus 227 ~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~------------- 293 (517)
T PF12569_consen 227 LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV------------- 293 (517)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-------------
Confidence 4566777788888888888888888888877543 4555778888888888888887765422100
Q ss_pred ccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHH
Q 000134 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDAR 1505 (2096)
Q Consensus 1426 ~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~ 1505 (2096)
++...+.+-|-.---...|++++..|+| ....+.|..+.+....|..-.|-+-.|+=+-
T Consensus 294 -------~~~~~L~~mQc~Wf~~e~a~a~~r~~~~---------~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK----- 352 (517)
T PF12569_consen 294 -------DPLSNLNDMQCMWFETECAEAYLRQGDY---------GLALKRFHAVLKHFDDFEEDQFDFHSYCLRK----- 352 (517)
T ss_pred -------CcccCHHHHHHHHHHHHHHHHHHHHhhH---------HHHHHHHHHHHHHHHHHhcccccHHHHHHhh-----
Confidence 0000001111111112346666666555 3356667777766666665555444443211
Q ss_pred hhhhhcccCCcchhhhhchHHHHHHHHHHhhcc-----CCcchhhhHHHHHHhhhhcCc
Q 000134 1506 KRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHR-----GHKNLFQALPRLLTLWFDFGS 1559 (2096)
Q Consensus 1506 ~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~-----g~~~~~q~lpRlLtLWl~~g~ 1559 (2096)
..+..|+.-|++ ++.+.+.+....+.+|+..-.
T Consensus 353 ---------------------~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d 390 (517)
T PF12569_consen 353 ---------------------MTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHD 390 (517)
T ss_pred ---------------------ccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhc
Confidence 245556665543 345566777778888877554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0915 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.27 E-value=24 Score=50.70 Aligned_cols=179 Identities=16% Similarity=0.257 Sum_probs=101.5
Q ss_pred hhcccccchhhhccccChh--HHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccHH----HHHHHHHHHhhhcCCCh
Q 000134 364 KMIPAVLPKLVVSQQDNDQ--AVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADER----RLLSALEFYCIQTGSDN 437 (2096)
Q Consensus 364 ~~~~~~LP~LVl~~~~~~~--~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~~----~~~~~l~~~~~~~~~~~ 437 (2096)
...+..+|.|...+ .|+. +......|=+.+=++-+..+..++-.|+--|+.+.+.. ..++||....--.+.+
T Consensus 994 p~l~kLIPrLyRY~-yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~- 1071 (1702)
T KOG0915|consen 994 PYLKKLIPRLYRYQ-YDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRP- 1071 (1702)
T ss_pred hHHHHhhHHHhhhc-cCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCC-
Confidence 34444689999874 3332 23455566667777778888899999999999877743 4678887644333333
Q ss_pred HHHHHHhhHHHHHHHHHhhcCCCchhHhhhh-cchhHHHHHHhhhccCC-CChhhhhHHHHHHHH-HH-hhhhhcCCCCh
Q 000134 438 QEIFAAALPALLDELICFVDGGDSDEINERL-NRVPRVIRKVSTVLTGN-EDLPGFLRNHFVGLL-NS-IDRKMLHAEDL 513 (2096)
Q Consensus 438 ~~~~~~~~~~~l~eLl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~fl~~~~LGil-~~-~~~~l~~~~~~ 513 (2096)
.+-+.+-+|.+...+..-+++ =-|+.|.. .+..+++.++--.+.++ +... -+.++.++ -+ ++.-++ ++-.
T Consensus 1072 ~~~~~e~lpelw~~~fRvmDD--IKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~---~~~~l~~iLPfLl~~gim-s~v~ 1145 (1702)
T KOG0915|consen 1072 FDQVKEKLPELWEAAFRVMDD--IKESVREAADKAARALSKLCVRICDVTNGAK---GKEALDIILPFLLDEGIM-SKVN 1145 (1702)
T ss_pred hHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhhcccCCccc---HHHHHHHHHHHHhccCcc-cchH
Confidence 334455666665444433322 12221111 12222222211111111 1110 12233332 11 333333 2223
Q ss_pred HHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhc
Q 000134 514 SLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAIN 550 (2096)
Q Consensus 514 ~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~ 550 (2096)
+.++-+|.-+..|++-.|+.+.++.|+.+.+|..+..
T Consensus 1146 evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s 1182 (1702)
T KOG0915|consen 1146 EVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYS 1182 (1702)
T ss_pred HHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHcc
Confidence 4567788889999999999999999999999998874
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=9.4 Score=52.85 Aligned_cols=333 Identities=12% Similarity=0.055 Sum_probs=179.2
Q ss_pred CCHHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCcc--------------------------ccCCC-CChhhHHHHH
Q 000134 1041 IPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAA--------------------------EKSGT-FEDEDVSFLM 1093 (2096)
Q Consensus 1041 Ip~~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~--------------------------~~~~~-~~~~~~~~L~ 1093 (2096)
+.+..+..+-.++|.+..|+..++.-.+... .|+. .+.|. .....+..|+
T Consensus 190 ~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~---~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li 266 (697)
T PLN03081 190 ASWGTIIGGLVDAGNYREAFALFREMWEDGS---DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALI 266 (697)
T ss_pred eeHHHHHHHHHHCcCHHHHHHHHHHHHHhCC---CCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHH
Confidence 3456667777777888888887776543211 1100 00000 0112457889
Q ss_pred HHHhcCCChHHHHHHHHHhcc---CChhHHHHHhHhhcCHHHHHHHHHHHHcc--CCCchhhhhhHHHHHHhccChHHHH
Q 000134 1094 EIYSFLDEPDGLSGLARLHKS---LSLQDELLSNKKSGNWAEVFTSCEQALQM--EPTSVQRHSDVLNCLLNMCHLQAMV 1168 (2096)
Q Consensus 1094 ~IYa~LdEpDgl~Gi~~~~~~---~sl~~qil~~E~~G~W~~A~~~YE~~Lq~--~p~~~~~~~glL~CL~~LGq~~~ll 1168 (2096)
+.|..-++.|.+..+...... .+-+.-|-.|-+.|++++|+..|+...+. .|+.. ....+++++.++|.++...
T Consensus 267 ~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~ 345 (697)
T PLN03081 267 DMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF-TFSIMIRIFSRLALLEHAK 345 (697)
T ss_pred HHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhccchHHHH
Confidence 999999999988888764222 23345566789999999999999876543 35443 4557888888889888655
Q ss_pred HHhhhhhccChhhhhhHhHHHHHHHHhcCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHH
Q 000134 1169 THVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKI 1248 (2096)
Q Consensus 1169 ~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i 1248 (2096)
...+.+...........+..-+.+-.+.|+++.-.+....+... ...+|+. +..++ .++++..+..+..
T Consensus 346 ~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~--------d~~t~n~-lI~~y--~~~G~~~~A~~lf 414 (697)
T PLN03081 346 QAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK--------NLISWNA-LIAGY--GNHGRGTKAVEMF 414 (697)
T ss_pred HHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC--------CeeeHHH-HHHHH--HHcCCHHHHHHHH
Confidence 54433322211111122333456667788888887777665431 1234543 22233 2455555555555
Q ss_pred HHHHHHhhhhhhccchhhHHhhhHHHHHhhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhh
Q 000134 1249 GVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAR 1328 (2096)
Q Consensus 1249 ~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~ 1328 (2096)
+++... .+.+. ..+|...-....+.-.+.|-.++.+.+... .+..++......+.+.+-+. ..+..-
T Consensus 415 ~~M~~~---g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~----~g~~p~~~~y~~li~~l~r~-----G~~~eA 481 (697)
T PLN03081 415 ERMIAE---GVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSEN----HRIKPRAMHYACMIELLGRE-----GLLDEA 481 (697)
T ss_pred HHHHHh---CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHh----cCCCCCccchHhHHHHHHhc-----CCHHHH
Confidence 444322 11111 112332222222222222222222211100 00001111111121111110 001000
Q ss_pred hhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--hHHHHHHHHHHHcCCchHHHHHHHH
Q 000134 1329 EPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP--NVHMEKAKLLWSTRRSDGAIAELQQ 1406 (2096)
Q Consensus 1329 e~iLslRr~vl~~~~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~--~~~iE~AKLLW~~g~~~~Ai~~L~~ 1406 (2096)
..+ +++. .... ...+|-.....+|++|.++.|..+..++..+++. ..+.--+.++-+.|+.++|.+.++.
T Consensus 482 ~~~--~~~~-----~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 482 YAM--IRRA-----PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHH--HHHC-----CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 011 1111 1111 2457999999999999999999999888776543 4566667889999999999999987
Q ss_pred Hhh
Q 000134 1407 NLL 1409 (2096)
Q Consensus 1407 ~i~ 1409 (2096)
.-+
T Consensus 554 m~~ 556 (697)
T PLN03081 554 LKR 556 (697)
T ss_pred HHH
Confidence 654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=95.18 E-value=8.3 Score=49.83 Aligned_cols=290 Identities=9% Similarity=-0.030 Sum_probs=147.1
Q ss_pred hhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhc
Q 000134 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2096)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrl 1196 (2096)
...+.+..-.+|+|+.|.....++....|++.-..+-.-+.....|+++....+.+......|+.........++.....
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 34455666788888888888888777777766555545556667788877766666544444443222222245666677
Q ss_pred CChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHH
Q 000134 1197 GRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVK 1276 (2096)
Q Consensus 1197 g~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~k 1276 (2096)
|+|+.-.+.+....... +.+..-..-+ +...+..+|.....+.+...++.. ....+.+.... ....
T Consensus 167 ~~~~~Al~~l~~l~~~~------P~~~~~l~ll--~~~~~~~~d~~~a~~~l~~l~k~~-----~~~~~~~~~l~-~~a~ 232 (409)
T TIGR00540 167 NELHAARHGVDKLLEMA------PRHKEVLKLA--EEAYIRSGAWQALDDIIDNMAKAG-----LFDDEEFADLE-QKAE 232 (409)
T ss_pred CCHHHHHHHHHHHHHhC------CCCHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHcC-----CCCHHHHHHHH-HHHH
Confidence 78764433333222110 0111111112 222344556555544444333321 00011110000 0000
Q ss_pred hhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHH
Q 000134 1277 LHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYA 1356 (2096)
Q Consensus 1277 LH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~A 1356 (2096)
.+.+. +... ......+...|+. ++-- .......++..|
T Consensus 233 ~~~l~------~~~~------------~~~~~~L~~~~~~-~p~~-----------------------~~~~~~l~~~~a 270 (409)
T TIGR00540 233 IGLLD------EAMA------------DEGIDGLLNWWKN-QPRH-----------------------RRHNIALKIALA 270 (409)
T ss_pred HHHHH------HHHH------------hcCHHHHHHHHHH-CCHH-----------------------HhCCHHHHHHHH
Confidence 11110 0000 0011223333322 1000 001256788999
Q ss_pred HHHHHcCChHHHHHHHHHHhhcCCChH-----HHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCC
Q 000134 1357 KLCRLAGHYETATRAILEAQASGAPNV-----HMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVP 1431 (2096)
Q Consensus 1357 klARKag~~~~A~~all~a~~~~~~~~-----~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~ 1431 (2096)
++..+.|.++.|...+.++.+..+++. .+..+-.+ ..++...+++.+++.++..|.
T Consensus 271 ~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l-~~~~~~~~~~~~e~~lk~~p~------------------ 331 (409)
T TIGR00540 271 EHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRL-KPEDNEKLEKLIEKQAKNVDD------------------ 331 (409)
T ss_pred HHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhc-CCCChHHHHHHHHHHHHhCCC------------------
Confidence 999999999999999999987544332 33222222 246677888888887653221
Q ss_pred CCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHhccchHHHHHHHHhhhHHH
Q 000134 1432 LNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYS--RVRELQPMWEKGYFYMAKYCDDV 1500 (2096)
Q Consensus 1432 ~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~--~a~~l~~~weK~~~~la~y~d~l 1500 (2096)
++. +.....+|+-....+ ..++..++|+ .+.+.+|+-+- +.++|.-+.+.
T Consensus 332 ---------------~~~-~~ll~sLg~l~~~~~--~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~ 383 (409)
T TIGR00540 332 ---------------KPK-CCINRALGQLLMKHG--EFIEAADAFKNVAACKEQLDAND-LAMAADAFDQA 383 (409)
T ss_pred ---------------Chh-HHHHHHHHHHHHHcc--cHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHc
Confidence 111 123334443332222 3567778888 57778887766 44777776543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=9.8 Score=49.02 Aligned_cols=110 Identities=13% Similarity=0.091 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG-APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~-~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~ 1427 (2096)
...++.+|+...+.|..+.|...+.++...+ ++...+-++++ ..|+..+|++.+++.++..|.
T Consensus 263 ~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~-------------- 326 (398)
T PRK10747 263 VALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGD-------------- 326 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCC--------------
Confidence 5678899999999999999999999987743 34455556655 348889999999988764221
Q ss_pred CCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHH
Q 000134 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDD 1499 (2096)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~ 1499 (2096)
-+..++.+|+-....++ .+...++|.++.+..|+- ..|..+|.-+++
T Consensus 327 ----------------------~~~l~l~lgrl~~~~~~--~~~A~~~le~al~~~P~~-~~~~~La~~~~~ 373 (398)
T PRK10747 327 ----------------------TPLLWSTLGQLLMKHGE--WQEASLAFRAALKQRPDA-YDYAWLADALDR 373 (398)
T ss_pred ----------------------CHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHH
Confidence 03345666665554443 678889999999999975 456677776653
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.059 Score=50.56 Aligned_cols=55 Identities=22% Similarity=0.373 Sum_probs=49.5
Q ss_pred hhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChh
Q 000134 1126 KSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2096)
Q Consensus 1126 ~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~ 1180 (2096)
+.|+|++|...|+.+++..|++.+...++-+|+...|+++......+.+....|+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 5799999999999999999999999999999999999999998888887776665
|
... |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.67 E-value=8 Score=49.41 Aligned_cols=66 Identities=14% Similarity=0.182 Sum_probs=51.9
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhH
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTW 1185 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~ 1185 (2096)
.---+-.+|.+++|..||..++...|+......+.--|+-.+|.|..+..-.-.-+.-.|++.+.+
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl 186 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKAL 186 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHH
Confidence 334466889999999999999999999777788899999999999988765554445556655543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=39 Score=48.99 Aligned_cols=326 Identities=10% Similarity=-0.015 Sum_probs=183.4
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhc----cCC--
Q 000134 1043 KVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHK----SLS-- 1116 (2096)
Q Consensus 1043 ~~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~----~~s-- 1116 (2096)
+..+..+..+++.+..|+..++.-.+.. ..| ....+..|+..|+..++.|.+..+..... .++
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~G---l~p--------D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv 508 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAG---LKA--------DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH 508 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcC---CCC--------CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 3456677788999999999888754321 111 23568999999999999999998875322 122
Q ss_pred -hhHHHHHhHhhcCHHHHHHHHHHHHcc--CCCchhhhhhHHHHHHhccChHHHHHHhhhhhcc----ChhhhhhHhHHH
Q 000134 1117 -LQDELLSNKKSGNWAEVFTSCEQALQM--EPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISR----IPQYKKTWCMQG 1189 (2096)
Q Consensus 1117 -l~~qil~~E~~G~W~~A~~~YE~~Lq~--~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~----~p~~~~~~~~~~ 1189 (2096)
...-|-.|-+.|++++|...|+...+. .|+ ......+++++.+.|+++......+.+... .|+. ..+..-
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~--vTynaL 585 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH--ITVGAL 585 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH--HHHHHH
Confidence 223456789999999999999987654 354 344567899999999999877766665431 2321 122334
Q ss_pred HHHHHhcCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHh
Q 000134 1190 VQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTR 1269 (2096)
Q Consensus 1190 vEAAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r 1269 (2096)
+.+.-+.|+++...+....+...|. .+....|+ .+..++ .+.++.++..+....++.. .+.+. ..+|..
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi----~p~~~tyn-sLI~ay--~k~G~~deAl~lf~eM~~~---Gv~PD-~~Tyns 654 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNI----KGTPEVYT-IAVNSC--SQKGDWDFALSIYDDMKKK---GVKPD-EVFFSA 654 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCC----CCChHHHH-HHHHHH--HhcCCHHHHHHHHHHHHHc---CCCCC-HHHHHH
Confidence 5666688999888777766654321 11112332 222222 2345544444444443322 11111 223433
Q ss_pred hhHHHHHhhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChh-hhhhHHHHHHhhcCcCCCCchh
Q 000134 1270 AYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLW-AREPLLAFRRMVFGASGLGAEV 1348 (2096)
Q Consensus 1270 ~y~~l~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~-~~e~iLslRr~vl~~~~~~~~~ 1348 (2096)
..+...+.-.+.|..++...+.. .....+......+....-+- ..+. ..+-+-.++. .+...+
T Consensus 655 LI~a~~k~G~~eeA~~l~~eM~k-----~G~~pd~~tynsLI~ay~k~-----G~~eeA~~lf~eM~~-----~g~~Pd- 718 (1060)
T PLN03218 655 LVDVAGHAGDLDKAFEILQDARK-----QGIKLGTVSYSSLMGACSNA-----KNWKKALELYEDIKS-----IKLRPT- 718 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHH-----cCCCCC-
Confidence 33333333333333333222211 11112222222333222110 0110 0000101111 112222
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-Ch--HHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA-PN--VHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~-~~--~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
..+|-.......+.|+++.|...+.+....+. |+ .+---...+-+.|+.++|.+.++..++
T Consensus 719 vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999998776652 33 122233567778999999999998865
|
|
| >KOG0212 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.21 E-value=15 Score=47.72 Aligned_cols=293 Identities=17% Similarity=0.220 Sum_probs=159.0
Q ss_pred HHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHhhhcCC-hhHHHHHHHHHHHHHhhhccc
Q 000134 197 FLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADD-PLILETLLESTAELMMAVDVH 275 (2096)
Q Consensus 197 ~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~eTll~~~~~i~~~~~~~ 275 (2096)
..+.||-=+=|+|++-.+...+.+-+ ..++-....+++..+..-+.-.-+ ++=+ --|+-+|....|-..+
T Consensus 7 r~ltdKlYekRKaaalelEk~Vk~l~--------~~~~~~~i~k~I~~L~~d~a~s~~~n~rk-GgLiGlAA~~iaLg~~ 77 (675)
T KOG0212|consen 7 RGLTDKLYEKRKAAALELEKLVKDLV--------NNNDYDQIRKVISELAGDYAYSPHANMRK-GGLIGLAAVAIALGIK 77 (675)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH--------ccCcHHHHHHHHHHHHHHhccCccccccc-chHHHHHHHHHHhccc
Confidence 34588989999999999888764322 223344456777755443443322 2222 4455555543333222
Q ss_pred ch-hHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcCchHHHHHHHHHHh
Q 000134 276 SQ-HFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAF 354 (2096)
Q Consensus 276 ~e-~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~rp~~~~~~~e~ll 354 (2096)
+- ..-.++--.+.+++.++.-||--|...+-++|+-.+.. +..++ +.+|+-+.|-..--.++++.-|| |+
T Consensus 78 ~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~----v~~~F----n~iFdvL~klsaDsd~~V~~~ae-LL 148 (675)
T KOG0212|consen 78 DAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGE----VLVYF----NEIFDVLCKLSADSDQNVRGGAE-LL 148 (675)
T ss_pred cHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccC----cccch----HHHHHHHHHHhcCCccccccHHH-HH
Confidence 21 23334444788999999999999999999999988664 34566 66788888877777888888887 22
Q ss_pred CCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccc--cHHHHHHHHHHHhhh
Q 000134 355 GVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQA--DERRLLSALEFYCIQ 432 (2096)
Q Consensus 355 g~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~--~~~~~~~~l~~~~~~ 432 (2096)
+.+++-+ |..+.. ---|.+ ..|++.+. +.... ++..+-+=|..+.+-
T Consensus 149 ----dRLikdI--------Vte~~~----tFsL~~--------~ipLL~er-------iy~~n~~tR~flv~Wl~~Lds~ 197 (675)
T KOG0212|consen 149 ----DRLIKDI--------VTESAS----TFSLPE--------FIPLLRER-------IYVINPMTRQFLVSWLYVLDSV 197 (675)
T ss_pred ----HHHHHHh--------cccccc----ccCHHH--------HHHHHHHH-------HhcCCchHHHHHHHHHHHHhcC
Confidence 3333332 111100 000111 11222221 11111 122233333333322
Q ss_pred cCCChHHHHHHhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCC
Q 000134 433 TGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAED 512 (2096)
Q Consensus 433 ~~~~~~~~~~~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~ 512 (2096)
..-++++ .+|.+++-|..++|+...+.....-.-..+-++++. +++..+ +| =.+++.+-.. +.++.
T Consensus 198 ---P~~~m~~-yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~---s~P~s~-d~-----~~~i~vlv~~-l~ss~ 263 (675)
T KOG0212|consen 198 ---PDLEMIS-YLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR---SSPSSM-DY-----DDMINVLVPH-LQSSE 263 (675)
T ss_pred ---CcHHHHh-cchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh---cCcccc-Cc-----ccchhhcccc-ccCCc
Confidence 2334444 778888888878877644321111111122233322 222222 11 0111111111 23455
Q ss_pred hHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCC
Q 000134 513 LSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKE 552 (2096)
Q Consensus 513 ~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~ 552 (2096)
...|..||.=|.+++++-|..+-.+.++|..-+.-.+...
T Consensus 264 ~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~ 303 (675)
T KOG0212|consen 264 PEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDT 303 (675)
T ss_pred HHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCC
Confidence 6788999999999999999988888888776665555433
|
|
| >KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.02 E-value=10 Score=51.14 Aligned_cols=37 Identities=19% Similarity=0.112 Sum_probs=32.1
Q ss_pred hcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHH
Q 000134 272 VDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKS 308 (2096)
Q Consensus 272 ~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l 308 (2096)
-|.+-|++.+..=+|---|-|+|-+|=|.|.+-+.++
T Consensus 98 LdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i 134 (866)
T KOG1062|consen 98 LDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNI 134 (866)
T ss_pred hccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhcc
Confidence 4667888877777899999999999999999988877
|
|
| >KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.97 E-value=31 Score=46.06 Aligned_cols=335 Identities=13% Similarity=0.177 Sum_probs=176.6
Q ss_pred cccCCChhhHHHHHHHhhcc-cCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHh
Q 000134 139 LNFHSDFSFLLNIYFEFLYD-ESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYF 217 (2096)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~-~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~ 217 (2096)
|-....++.+-+ |.|.++. ..|-+-+=-+++....|.....+.++--- ...++||+.+|.|..+.||.-.+-++++.
T Consensus 503 vasalgip~llp-fLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl-~~lv~ii~~gl~De~qkVR~itAlalsal 580 (1172)
T KOG0213|consen 503 VASALGIPALLP-FLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHL-KPLVKIIEHGLKDEQQKVRTITALALSAL 580 (1172)
T ss_pred HHHHhCcHHHHH-HHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhh-HHHHHHHHHhhcccchhhhhHHHHHHHHH
Confidence 445667788888 8888888 44777777788888877777666654332 45789999999999999999998888885
Q ss_pred hhhhhhhhhccCcccccchhh-HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcc
Q 000134 218 LQDTVLSSLFLDENASSRSNE-LKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVT 296 (2096)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~ 296 (2096)
.++.. - -+..- ..+|.-+ |..| +.. ++.. +.+|..-+.||-+-.--
T Consensus 581 aeaa~---------P-ygie~fDsVlkpL-------------------wkgi--r~h-rgk~-laafLkAigyliplmd~ 627 (1172)
T KOG0213|consen 581 AEAAT---------P-YGIEQFDSVLKPL-------------------WKGI--RQH-RGKE-LAAFLKAIGYLIPLMDA 627 (1172)
T ss_pred HHhcC---------C-cchHHHHHHHHHH-------------------HHHH--HHc-cChH-HHHHHHHHhhccccccH
Confidence 42211 1 11111 1122222 2222 221 2222 23666677777665444
Q ss_pred hHHHHHH-HHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcCchHHHHHHHHHHhCCChHHHHHhhcccccchhhh
Q 000134 297 VRMNASR-LIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVV 375 (2096)
Q Consensus 297 v~~~A~~-~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~rp~~~~~~~e~llg~~~~~fL~~~~~~~LP~LVl 375 (2096)
..+.-|+ ++.-+-.+- +-++...| =..+.| .+++.| +.-|++. ++++.- +||....
T Consensus 628 eya~yyTrevmlil~rE-------f~sPDeem----kkivLK-------Vv~qcc-~t~Gv~~-~y~r~d---ilp~ff~ 684 (1172)
T KOG0213|consen 628 EYASYYTREVMLILIRE-------FGSPDEEM----KKIVLK-------VVKQCC-ATDGVEP-AYIRFD---ILPEFFF 684 (1172)
T ss_pred HHHHHhHHHHHHHHHHh-------hCCChHHH----HHHHHH-------HHHHHh-cccCCCH-HHHhhh---hhHHHHh
Confidence 4444443 333331111 11233222 122221 344544 4555443 344433 4555443
Q ss_pred c---------cccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccHHHHHHHHHHHhhhcCCChHHHHHHhhH
Q 000134 376 S---------QQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLLSALEFYCIQTGSDNQEIFAAALP 446 (2096)
Q Consensus 376 ~---------~~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 446 (2096)
. ++...+.+.+-.+||...+.+ +.+...+.-+..+ . +=++....
T Consensus 685 ~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~----------------------~~v~R~v~~lkde----~-e~yrkm~~ 737 (1172)
T KOG0213|consen 685 SFWGRRMALDRRNYKQLVDTTVEIAAKVGSD----------------------PIVSRVVLDLKDE----P-EQYRKMVA 737 (1172)
T ss_pred hhhhhhhhccccchhhHHHHHHHHHHHhCch----------------------HHHHHHhhhhccc----c-HHHHHHHH
Confidence 2 333333444555666655421 1122222111111 0 00111111
Q ss_pred HHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHH
Q 000134 447 ALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEIL 526 (2096)
Q Consensus 447 ~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~l 526 (2096)
.++...+-.+|..|-|+.. -+..+=||+.-|...-.. + .-.+..+|..
T Consensus 738 etv~ri~~~lg~~diderl--------------------------eE~lidgil~Afqeqtt~--d----~vml~gfg~V 785 (1172)
T KOG0213|consen 738 ETVSRIVGRLGAADIDERL--------------------------EERLIDGILYAFQEQTTE--D----SVMLLGFGTV 785 (1172)
T ss_pred HHHHHHHhccccccccHHH--------------------------HHHHHHHHHHHHHhcccc--h----hhhhhhHHHH
Confidence 2222223345555544311 122344777777643211 1 2457889999
Q ss_pred HHHhccccccchhhHHHHHHHHhcC--CCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccc
Q 000134 527 IEMIGSHLTTYVPKILVLLMHAINK--ESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLE 593 (2096)
Q Consensus 527 i~l~g~~v~~~~pqI~a~L~~aL~~--~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~ 593 (2096)
..-+|+.+..++||||.+..--|++ +..|..+.+.-..+...|.. |.+ +.++...-++|.-|+.
T Consensus 786 ~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlkt-c~e--e~~m~~lGvvLyEylg 851 (1172)
T KOG0213|consen 786 VNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKT-CGE--EKLMGHLGVVLYEYLG 851 (1172)
T ss_pred HHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHh-ccH--HHHHHHhhHHHHHhcC
Confidence 9999999999999999998888874 44677777666665555543 221 2334444455666664
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=93.34 E-value=62 Score=49.32 Aligned_cols=387 Identities=12% Similarity=0.094 Sum_probs=179.4
Q ss_pred CChhHHHHHHHHHHHHHhhhcccchh-H-HHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhh
Q 000134 253 DDPLILETLLESTAELMMAVDVHSQH-F-LFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNE 330 (2096)
Q Consensus 253 ~d~~i~eTll~~~~~i~~~~~~~~e~-~-~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~ 330 (2096)
.++++++-.+.+++-|....+.+... . .-++-.|+..|.+++.-++-.|..-|.++|.+. .+--..+. +..
T Consensus 458 ~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~-~qir~iV~------~aG 530 (2102)
T PLN03200 458 SSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHS-EDIRACVE------SAG 530 (2102)
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCc-HHHHHHHH------HCC
Confidence 56778888888888874322221111 1 123456888889999999999999999998742 11000110 112
Q ss_pred hhHHHHHHhcCchHHHH-----HHHHHHhCCChHHHHHhhcccccchhhh--ccccChhHHHHHHHHHHHcC---C-Cch
Q 000134 331 LFDYLSVRLASRPIMVR-----EFAEAAFGVETEELVKKMIPAVLPKLVV--SQQDNDQAVNIINELAKCLN---T-DMV 399 (2096)
Q Consensus 331 l~~~~~~~l~~rp~~~~-----~~~e~llg~~~~~fL~~~~~~~LP~LVl--~~~~~~~~~~~i~~ia~~~~---~-~~~ 399 (2096)
..+++++-|.+....++ .++. ++....++ ++|.|+- ..+........++.|+..+. . +.+
T Consensus 531 AIppLV~LL~sgd~~~q~~Aa~AL~n-Li~~~d~~--------~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~ 601 (2102)
T PLN03200 531 AVPALLWLLKNGGPKGQEIAAKTLTK-LVRTADAA--------TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLV 601 (2102)
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHH-HHhccchh--------HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHH
Confidence 24455555554322222 2222 22212111 2222221 11111111123333333222 1 111
Q ss_pred hH--HhhhHHHHHHHHhccccHH---HHHHHHHHHhhhcCCChHHHH-HHhhHHHHHHHHHhhcCCCchhHhhhhcchhH
Q 000134 400 PL--IVTWIPKVLAFALHQADER---RLLSALEFYCIQTGSDNQEIF-AAALPALLDELICFVDGGDSDEINERLNRVPR 473 (2096)
Q Consensus 400 ~l--~~~~~~~Ila~ll~~~~~~---~~~~~l~~~~~~~~~~~~~~~-~~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~ 473 (2096)
.- ..+..-..|..|+...+++ ....+|.-+.+......+.++ ...+|.++ +|+. .++.+.. +. ...
T Consensus 602 ~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV-~LLs---s~~~~v~-ke---AA~ 673 (2102)
T PLN03200 602 REGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCI-KLLT---NNTEAVA-TQ---SAR 673 (2102)
T ss_pred HHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHH-HHHh---cCChHHH-HH---HHH
Confidence 11 1233444555566555543 344444433322111122333 35556666 4433 2332221 11 233
Q ss_pred HHHHHhhhccCC-CChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccc----cccchhhHHHHHHHH
Q 000134 474 VIRKVSTVLTGN-EDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSH----LTTYVPKILVLLMHA 548 (2096)
Q Consensus 474 ~~~~~~~~~~~~-~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~----v~~~~pqI~a~L~~a 548 (2096)
++-.+.+ .+. +....+++.. .+.-+- .++..++...+..++.+|+.+.+.-... -..++|.++..|+++
T Consensus 674 AL~nL~~--~~~~~q~~~~v~~G---aV~pL~-~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G 747 (2102)
T PLN03200 674 ALAALSR--SIKENRKVSYAAED---AIKPLI-KLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREG 747 (2102)
T ss_pred HHHHHHh--CCCHHHHHHHHHcC---CHHHHH-HHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhC
Confidence 3333332 112 1223333332 222222 1334556777888999999887754221 235678899999887
Q ss_pred hcCCCcchhhhHHHHHHHHHhccCCCcc-hhhHHHH--HHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhc
Q 000134 549 INKESLQCEGLSVLHFFIEQLSRVSPSS-TKHVISQ--VFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHI 625 (2096)
Q Consensus 549 L~~~~L~~~~l~~W~~fv~~L~~~~~~~-l~~ll~~--i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i 625 (2096)
.++-+..|..+-..+++.-. .++ +...+.. ++..++.+++.-+-+ ....-.|.+.|.+|...... ...
T Consensus 748 --~~~~k~~Aa~AL~~L~~~~~---~~~~~~~~~~~~g~v~~l~~~L~~~~~~-~~~~~~al~~l~~l~~~~~~---~~~ 818 (2102)
T PLN03200 748 --TLEGKRNAARALAQLLKHFP---VDDVLKDSVQCRGTVLALVDLLNSTDLD-SSATSEALEALALLARTKGG---ANF 818 (2102)
T ss_pred --ChHHHHHHHHHHHHHHhCCC---hhHHHHHHHHHhCcHHHHHHHHhcCCcc-hhhHHHHHHHHHHHHhhccc---CCC
Confidence 45567777666666666532 123 2222221 233334444433211 11222466666665432110 011
Q ss_pred ccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHh
Q 000134 626 HEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALIN 695 (2096)
Q Consensus 626 ~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~ 695 (2096)
.. |.+. ++-+..+ -|.-+++.+.|+|+.|-.-|..=|.++.+....-+.+++.
T Consensus 819 ~~-------~~~~----~~~e~p~------~l~~l~~~l~~~~p~~~~kai~il~~~~~~~~~~~~~~~~ 871 (2102)
T PLN03200 819 SH-------PPWA----VLAEVPS------SLEPLVRCLAEGHPLVQDKAIEILSRLCRDQPVVLGDLIA 871 (2102)
T ss_pred CC-------Cchh----hHHhccC------chHHHHHHHHcCChHHHHHHHHHHHHHhccChhHHHHHHh
Confidence 11 1111 1111111 2334456668888888888888888777666554444443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.19 Score=46.90 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=50.9
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccCh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p 1179 (2096)
+...+...|+|++|..+|+.+++..|++.+...++=.|+...|+++......+......|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 456788999999999999999999999999999999999999999988777666554444
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=93.14 E-value=5.3 Score=45.52 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=98.8
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----hh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l~ 1118 (2096)
.++.....-+.|..|+.+++..+...+. ....+..+..+|...+++|........ ...+. ..
T Consensus 36 ~la~~~~~~~~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 103 (234)
T TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEHDPD------------DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLN 103 (234)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 4678888899999999999987654211 123456788888888988877776542 11121 11
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccC--CCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhc
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQME--PTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~--p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrl 1196 (2096)
.....+...|++++|..+|+++++.. +........+-.|+...|+++......+......|+... .......+....
T Consensus 104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~ 182 (234)
T TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPE-SLLELAELYYLR 182 (234)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChH-HHHHHHHHHHHc
Confidence 23445678899999999999888643 333444555667788889888777766655554444322 222334666778
Q ss_pred CChhhHHHhhcc
Q 000134 1197 GRWDLMDEYLSG 1208 (2096)
Q Consensus 1197 g~Wd~l~~~l~~ 1208 (2096)
|+|+.-.+++..
T Consensus 183 ~~~~~A~~~~~~ 194 (234)
T TIGR02521 183 GQYKDARAYLER 194 (234)
T ss_pred CCHHHHHHHHHH
Confidence 888776665554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.84 Score=58.76 Aligned_cols=189 Identities=15% Similarity=0.116 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh--
Q 000134 1305 LKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN-- 1382 (2096)
Q Consensus 1305 ~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~~-- 1382 (2096)
...+.+.+.|++|=+.- .-|.+=+..+.. +.+-.+.|+..|-.--..|..+.|..+-.+|.++++..
T Consensus 117 e~ysn~aN~~kerg~~~--------~al~~y~~aiel---~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~c 185 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQ--------DALALYRAAIEL---KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYC 185 (966)
T ss_pred HHHHHHHHHHHHhchHH--------HHHHHHHHHHhc---CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhh
Confidence 34556778898885322 122222333332 24557789999999999999999999999999887643
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHH
Q 000134 1383 VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIH 1462 (2096)
Q Consensus 1383 ~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~ 1462 (2096)
+.-.-..|+-++|.-++|-.+-.++|..-|.. |-++--+|--..
T Consensus 186 a~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f------------------------------------AiawsnLg~~f~ 229 (966)
T KOG4626|consen 186 ARSDLGNLLKAEGRLEEAKACYLKAIETQPCF------------------------------------AIAWSNLGCVFN 229 (966)
T ss_pred hhcchhHHHHhhcccchhHHHHHHHHhhCCce------------------------------------eeeehhcchHHh
Confidence 23334567888899999999888887643211 111222222223
Q ss_pred HhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHH--HHHhhhhhcccCCcchhh----------hhchHHHHHH
Q 000134 1463 YTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLV--DARKRQEENSEIGPSEKR----------WWFYVPDVLL 1530 (2096)
Q Consensus 1463 ~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~--~~~~~~e~~~~~g~~~~~----------~~~~l~~ai~ 1530 (2096)
++|. ....+.+|.+|++++|..-.+|+.||.-|..... .+-.+.+......+.... -+..+..||.
T Consensus 230 ~~Ge--i~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~ 307 (966)
T KOG4626|consen 230 AQGE--IWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAID 307 (966)
T ss_pred hcch--HHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHH
Confidence 3332 5567899999999999999999999998876531 111110000001110000 0124567899
Q ss_pred HHHHhhccCCcc
Q 000134 1531 FYAKGLHRGHKN 1542 (2096)
Q Consensus 1531 ~Y~~sl~~g~~~ 1542 (2096)
+|-+++...+.+
T Consensus 308 ~Ykral~~~P~F 319 (966)
T KOG4626|consen 308 TYKRALELQPNF 319 (966)
T ss_pred HHHHHHhcCCCc
Confidence 999999888764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=92.87 E-value=68 Score=46.61 Aligned_cols=303 Identities=10% Similarity=0.059 Sum_probs=167.1
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhc----cCC--
Q 000134 1043 KVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHK----SLS-- 1116 (2096)
Q Consensus 1043 ~~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~----~~s-- 1116 (2096)
+..|..+-.+||.+..|+..++.-.... ..| ....+..|+..|.+.++.|.+..+..... .++
T Consensus 475 ynsLI~~y~k~G~vd~A~~vf~eM~~~G---v~P--------dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~v 543 (1060)
T PLN03218 475 YTTLISTCAKSGKVDAMFEVFHEMVNAG---VEA--------NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRV 543 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcC---CCC--------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 4567778889999999999998754321 111 23578999999999999999888865321 122
Q ss_pred -hhHHHHHhHhhcCHHHHHHHHHHHHcc----CCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHH
Q 000134 1117 -LQDELLSNKKSGNWAEVFTSCEQALQM----EPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQ 1191 (2096)
Q Consensus 1117 -l~~qil~~E~~G~W~~A~~~YE~~Lq~----~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vE 1191 (2096)
...-|-.+-+.|++++|...|+..... .|+. ....-+++++.+.|+++.+....+.+...........+...+.
T Consensus 544 TYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~-vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH-ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 233456788999999999999987642 4553 3455789999999999988777776654321111222334566
Q ss_pred HHHhcCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhh
Q 000134 1192 AAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAY 1271 (2096)
Q Consensus 1192 AAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y 1271 (2096)
+--+.|+|+...+.+..+...|.. ++......+..++ .+.++.++..+.++.++..- +. ....+|..-.
T Consensus 623 ay~k~G~~deAl~lf~eM~~~Gv~-----PD~~TynsLI~a~--~k~G~~eeA~~l~~eM~k~G---~~-pd~~tynsLI 691 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKKGVK-----PDEVFFSALVDVA--GHAGDLDKAFEILQDARKQG---IK-LGTVSYSSLM 691 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHcC---CC-CCHHHHHHHH
Confidence 667889998888877766554311 2211111222222 23455555555555444321 11 1122444333
Q ss_pred HHHHHhhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHH
Q 000134 1272 PFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNC 1351 (2096)
Q Consensus 1272 ~~l~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~ 1351 (2096)
....+.-.+.|..++..-+.. ....++... |..=+......-...+-+--++.. . ..+...+ ..+
T Consensus 692 ~ay~k~G~~eeA~~lf~eM~~-----~g~~Pdvvt-------yN~LI~gy~k~G~~eeAlelf~eM-~-~~Gi~Pd-~~T 756 (1060)
T PLN03218 692 GACSNAKNWKKALELYEDIKS-----IKLRPTVST-------MNALITALCEGNQLPKALEVLSEM-K-RLGLCPN-TIT 756 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHH-----cCCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHH-H-HcCCCCC-HHH
Confidence 444444333333333222110 001111111 222222111111111111111111 0 1122222 346
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-CChH
Q 000134 1352 WLQYAKLCRLAGHYETATRAILEAQASG-APNV 1383 (2096)
Q Consensus 1352 WL~~AklARKag~~~~A~~all~a~~~~-~~~~ 1383 (2096)
|-.....+.+.|.++.|...+.++.+.+ .|+.
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 6667788999999999999999988776 3443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=92.63 E-value=3 Score=47.62 Aligned_cols=151 Identities=12% Similarity=0.067 Sum_probs=106.8
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH-hccC-------
Q 000134 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-HKSL------- 1115 (2096)
Q Consensus 1044 ~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~-~~~~------- 1115 (2096)
..++.....-+.|..|+-+++..+...+. ....+..+..+|...+++|........ ....
T Consensus 69 ~~la~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 136 (234)
T TIGR02521 69 LALALYYQQLGELEKAEDSFRRALTLNPN------------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPAR 136 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchH
Confidence 35678888889999999999988764211 123566788899999999887776542 1111
Q ss_pred ChhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHh
Q 000134 1116 SLQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWR 1195 (2096)
Q Consensus 1116 sl~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWr 1195 (2096)
........+...|++++|..+|+++++..|++......+-.++...|+++....+.+......|.. .............
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 215 (234)
T TIGR02521 137 SLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQT-AESLWLGIRIARA 215 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence 111234567889999999999999999999988877788889999999998777666544333322 2222345667778
Q ss_pred cCChhhHHHhhc
Q 000134 1196 LGRWDLMDEYLS 1207 (2096)
Q Consensus 1196 lg~Wd~l~~~l~ 1207 (2096)
.|+++....+..
T Consensus 216 ~~~~~~a~~~~~ 227 (234)
T TIGR02521 216 LGDVAAAQRYGA 227 (234)
T ss_pred HhhHHHHHHHHH
Confidence 888887766543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.93 Score=55.10 Aligned_cols=221 Identities=17% Similarity=0.135 Sum_probs=69.2
Q ss_pred hHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhhHH
Q 000134 1124 NKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMD 1203 (2096)
Q Consensus 1124 ~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l~ 1203 (2096)
.+..|+++.|..+|++.++..+.+......++.. ...|+++.....++....+.+ ...+....++.+.+.|+|+.+.
T Consensus 54 a~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~--~~~~l~~~l~~~~~~~~~~~~~ 130 (280)
T PF13429_consen 54 AWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG--DPRYLLSALQLYYRLGDYDEAE 130 (280)
T ss_dssp -------------------------------------------------------------------H-HHHTT-HHHHH
T ss_pred cccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc--ccchhhHHHHHHHHHhHHHHHH
Confidence 4678899999999999998887766555555555 567888877776655433332 2233345667788999999999
Q ss_pred HhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhhhhhHH
Q 000134 1204 EYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLLQEL 1283 (2096)
Q Consensus 1204 ~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH~L~EL 1283 (2096)
+.+...... ...+.+..|.... +-.....|+..+..+.++++- - ..+.+.--+. .+ ++.+.+.
T Consensus 131 ~~l~~~~~~----~~~~~~~~~~~~~--a~~~~~~G~~~~A~~~~~~al---~----~~P~~~~~~~--~l--~~~li~~ 193 (280)
T PF13429_consen 131 ELLEKLEEL----PAAPDSARFWLAL--AEIYEQLGDPDKALRDYRKAL---E----LDPDDPDARN--AL--AWLLIDM 193 (280)
T ss_dssp HHHHHHHH-----T---T-HHHHHHH--HHHHHHCCHHHHHHHHHHHHH---H----H-TT-HHHHH--HH--HHHHCTT
T ss_pred HHHHHHHhc----cCCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHH---H----cCCCCHHHHH--HH--HHHHHHC
Confidence 888764421 0111222333333 333445555544333333221 1 1111110000 00 1111111
Q ss_pred HHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHcC
Q 000134 1284 EDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAG 1363 (2096)
Q Consensus 1284 ee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklARKag 1363 (2096)
. ...+...++..|.... .+ ....|..+|...-.-|
T Consensus 194 ~------------------~~~~~~~~l~~~~~~~---~~------------------------~~~~~~~la~~~~~lg 228 (280)
T PF13429_consen 194 G------------------DYDEAREALKRLLKAA---PD------------------------DPDLWDALAAAYLQLG 228 (280)
T ss_dssp C------------------HHHHHHHHHHHHHHH----HT------------------------SCCHCHHHHHHHHHHT
T ss_pred C------------------ChHHHHHHHHHHHHHC---cC------------------------HHHHHHHHHHHhcccc
Confidence 0 1112233444444433 11 1235677788888899
Q ss_pred ChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1364 HYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1364 ~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
+++.|...+.++.... +|.+....|..|+..|+.++|....+++..
T Consensus 229 ~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 229 RYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999987753 678999999999999999999999887754
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=92.25 E-value=1.5 Score=55.60 Aligned_cols=112 Identities=12% Similarity=0.029 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccC
Q 000134 1351 CWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLS 1428 (2096)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~ 1428 (2096)
.+..-|.-|.+.|.++.|...+.+|.... .+.+....|..+...|+..+|+..+++++.-.|
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P---------------- 67 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP---------------- 67 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----------------
Confidence 46788999999999999999999998775 456888999999999999999999999876211
Q ss_pred CCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000134 1429 LVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2096)
Q Consensus 1429 ~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l 1500 (2096)
..+.+++.+|.-+...|+ .++++..|.++++++|.....+..+++...++
T Consensus 68 --------------------~~~~a~~~lg~~~~~lg~--~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 68 --------------------SLAKAYLRKGTACMKLEE--YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred --------------------CCHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 114456666665555544 78899999999999999888777776655444
|
|
| >KOG1248 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.23 E-value=71 Score=45.36 Aligned_cols=96 Identities=15% Similarity=0.193 Sum_probs=62.0
Q ss_pred CChHHHHHHHHHHHHHHHH--hccccccchhhHHHHHHHHhc--CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHH
Q 000134 511 EDLSLQKQALKRIEILIEM--IGSHLTTYVPKILVLLMHAIN--KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFA 586 (2096)
Q Consensus 511 ~~~~~k~~~l~sl~~li~l--~g~~v~~~~pqI~a~L~~aL~--~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~ 586 (2096)
.+...|+++-+=|++++.. +-..+....-.|+-.|..+++ ...-+...++||+.+++.++ .+.-.++...+.
T Consensus 666 ~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~----~e~~~~i~k~I~ 741 (1176)
T KOG1248|consen 666 SSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLS----AEHCDLIPKLIP 741 (1176)
T ss_pred ccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHH
Confidence 3456788888888888887 222456666777777777775 35577889999999999875 233233333222
Q ss_pred -HhhhccccCCCCchhhHHHHHHHHHHHH
Q 000134 587 -ALIPFLERDKDNPSVLLNKVVKILEDLV 614 (2096)
Q Consensus 587 -~lip~~~~~~~~~~~~~~~~~~il~~Li 614 (2096)
.++.+ . +.....++-+.++|.+|-
T Consensus 742 EvIL~~-K---e~n~~aR~~Af~lL~~i~ 766 (1176)
T KOG1248|consen 742 EVILSL-K---EVNVKARRNAFALLVFIG 766 (1176)
T ss_pred HHHHhc-c---cccHHHHhhHHHHHHHHH
Confidence 23333 2 333445777888887775
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=92.18 E-value=43 Score=47.71 Aligned_cols=322 Identities=9% Similarity=-0.002 Sum_probs=168.0
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhcc---CChhHH
Q 000134 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKS---LSLQDE 1120 (2096)
Q Consensus 1044 ~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~---~sl~~q 1120 (2096)
..+-.+..+.+.+..|...++.-.+..- .+ ....+..|++.|...++.|.+..+...... .+-+.-
T Consensus 393 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~---~~--------~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~m 461 (857)
T PLN03077 393 ASVLSACACLGDLDVGVKLHELAERKGL---IS--------YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSI 461 (857)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhCC---Cc--------chHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHH
Confidence 3455577788999999988887554321 11 224678999999999999999998764322 344556
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd 1200 (2096)
|..|.+.|++.+|+..|+..++.-+.+......+|.++-++|.++.......-+...--........--+.+-.+.|+++
T Consensus 462 i~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~ 541 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN 541 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHH
Confidence 77889999999999999987754333434445677777777877644332211111100000011112234445566665
Q ss_pred hHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhhhh
Q 000134 1201 LMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLL 1280 (2096)
Q Consensus 1201 ~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH~L 1280 (2096)
.-.+....... ...+|+. +..++ .++++..+..+..+++... .+.+. ..+|........+.-.+
T Consensus 542 ~A~~~f~~~~~---------d~~s~n~-lI~~~--~~~G~~~~A~~lf~~M~~~---g~~Pd-~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 542 YAWNQFNSHEK---------DVVSWNI-LLTGY--VAHGKGSMAVELFNRMVES---GVNPD-EVTFISLLCACSRSGMV 605 (857)
T ss_pred HHHHHHHhcCC---------ChhhHHH-HHHHH--HHcCCHHHHHHHHHHHHHc---CCCCC-cccHHHHHHHHhhcChH
Confidence 55444433321 1123432 22222 2455555544444443322 11111 11232222222222222
Q ss_pred hHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHHH
Q 000134 1281 QELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCR 1360 (2096)
Q Consensus 1281 ~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklAR 1360 (2096)
.|-.++.+.+.. ..+..++..-...+...+-+ .. ...|-.--++.. ....+ ...|-.....||
T Consensus 606 ~ea~~~f~~M~~----~~gi~P~~~~y~~lv~~l~r-~G------~~~eA~~~~~~m-----~~~pd-~~~~~aLl~ac~ 668 (857)
T PLN03077 606 TQGLEYFHSMEE----KYSITPNLKHYACVVDLLGR-AG------KLTEAYNFINKM-----PITPD-PAVWGALLNACR 668 (857)
T ss_pred HHHHHHHHHHHH----HhCCCCchHHHHHHHHHHHh-CC------CHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHH
Confidence 222222111110 00011111111111111111 00 001111001111 11112 567888888899
Q ss_pred HcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1361 LAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1361 Kag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
.+|..+.|..+..++.++.+ +..++--+.++-+.|+.++|.+..+..-+
T Consensus 669 ~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 669 IHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred HcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 99999999998888777653 45677778888899999999998877654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=92.11 E-value=3.8 Score=47.62 Aligned_cols=115 Identities=15% Similarity=0.195 Sum_probs=81.8
Q ss_pred hhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHH-HcCC--chHHHHH
Q 000134 1329 EPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLW-STRR--SDGAIAE 1403 (2096)
Q Consensus 1329 e~iLslRr~vl~~~~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW-~~g~--~~~Ai~~ 1403 (2096)
+-+..+++.+-. +.+..+.|...+++....|+++.|..++.+|..+. ++.+....|..++ ..|+ ..+|.+.
T Consensus 57 ~~i~~l~~~L~~----~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 57 AQLQALQDKIRA----NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred HHHHHHHHHHHH----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 445556554321 22446789999999999999999999999999886 4667888899775 5566 4899999
Q ss_pred HHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 000134 1404 LQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQ 1483 (2096)
Q Consensus 1404 L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~ 1483 (2096)
++++++..|.+ ..++.++|--..+.|. .++.+..|+++.++.
T Consensus 133 l~~al~~dP~~------------------------------------~~al~~LA~~~~~~g~--~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 133 IDKALALDANE------------------------------------VTALMLLASDAFMQAD--YAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHhCCCC------------------------------------hhHHHHHHHHHHHcCC--HHHHHHHHHHHHhhC
Confidence 99998642211 2345555554444444 667778888887777
Q ss_pred cc
Q 000134 1484 PM 1485 (2096)
Q Consensus 1484 ~~ 1485 (2096)
|.
T Consensus 175 ~~ 176 (198)
T PRK10370 175 SP 176 (198)
T ss_pred CC
Confidence 64
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.33 Score=59.03 Aligned_cols=165 Identities=15% Similarity=0.178 Sum_probs=82.2
Q ss_pred HhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH-hccC--C-----hhHHHH
Q 000134 1051 FRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-HKSL--S-----LQDELL 1122 (2096)
Q Consensus 1051 ~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~-~~~~--s-----l~~qil 1122 (2096)
..-+.|.+|+-++|.-++..+ + ...+..+..+|...++.+.+..+... .... . ......
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~---~----------~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~ 154 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDG---D----------PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAE 154 (280)
T ss_dssp -------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHH
T ss_pred ccccccccccccccccccccc---c----------cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence 467888999999887665321 1 13456677889999999988888653 1111 1 123445
Q ss_pred HhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhhH
Q 000134 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLM 1202 (2096)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l 1202 (2096)
.+++.|++++|..+|++++...|++.+...+++..+.+.|+.+.+...++.+....|....-|. .-..+-..+|+-+.-
T Consensus 155 ~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~-~la~~~~~lg~~~~A 233 (280)
T PF13429_consen 155 IYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWD-ALAAAYLQLGRYEEA 233 (280)
T ss_dssp HHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCH-HHHHHHHHHT-HHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHH-HHHHHhccccccccc
Confidence 6789999999999999999999999998889999999999998755555444333332222222 234566778887665
Q ss_pred HHhhcccCccCccccCCCCCcchhHHHHHHHHH
Q 000134 1203 DEYLSGADEEGLLCSSSESNASFDMDVAKILQA 1235 (2096)
Q Consensus 1203 ~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~a 1235 (2096)
-+++...-.. .+.+..+...+|.++..
T Consensus 234 l~~~~~~~~~------~p~d~~~~~~~a~~l~~ 260 (280)
T PF13429_consen 234 LEYLEKALKL------NPDDPLWLLAYADALEQ 260 (280)
T ss_dssp HHHHHHHHHH------STT-HHHHHHHHHHHT-
T ss_pred cccccccccc------ccccccccccccccccc
Confidence 5554432210 11234455556666543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.27 E-value=28 Score=46.05 Aligned_cols=231 Identities=16% Similarity=0.237 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
...|++-+.+-+.+|..+.=..-+.+|-... .+-+-+=+||..|.-|+...|..+|.++++.+|..- . + -+.+
T Consensus 550 ~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnse-e---i-wlaa 624 (913)
T KOG0495|consen 550 KSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSE-E---I-WLAA 624 (913)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcH-H---H-HHHH
Confidence 3456666666666665554433333443332 233555566666666666666666666665333210 0 0 0000
Q ss_pred cCCCCCCCCCcccccccchhchhH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDI---------AKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~---------Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~ 1497 (2096)
..+-.. ..|...-+.+. ++++.+.+...-..+ ..++.++...++++..|...|-|..+|+-+
T Consensus 625 vKle~e-------n~e~eraR~llakar~~sgTeRv~mKs~~~er~ld--~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~ 695 (913)
T KOG0495|consen 625 VKLEFE-------NDELERARDLLAKARSISGTERVWMKSANLERYLD--NVEEALRLLEEALKSFPDFHKLWLMLGQIE 695 (913)
T ss_pred HHHhhc-------cccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhh--hHHHHHHHHHHHHHhCCchHHHHHHHhHHH
Confidence 000000 00100001111 233444444333333 368888888999999999999999999987
Q ss_pred HHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhhHhHHH
Q 000134 1498 DDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNG 1577 (2096)
Q Consensus 1498 d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~ 1577 (2096)
+.. ..+..+-..|..++..-+. ++| ||+..+....+. ....
T Consensus 696 e~~----------------------~~ie~aR~aY~~G~k~cP~----~ip----LWllLakleEk~---------~~~~ 736 (913)
T KOG0495|consen 696 EQM----------------------ENIEMAREAYLQGTKKCPN----SIP----LWLLLAKLEEKD---------GQLV 736 (913)
T ss_pred HHH----------------------HHHHHHHHHHHhccccCCC----Cch----HHHHHHHHHHHh---------cchh
Confidence 533 1234567778876655433 333 777655321111 1112
Q ss_pred HHHHHHHhhcCCCCCchhhhhhHHhhhccccCchHHHHHHHHHHHHHHHhchhhH-HHHH
Q 000134 1578 KVMSIMRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQG-LWIM 1636 (2096)
Q Consensus 1578 ~v~~~~~~~~~~iP~~~wl~~lPQLisRl~h~~~~v~~~l~~il~kv~~~yPqq~-lw~l 1636 (2096)
+-..++++..-+=|-.. +.||--+=-.+.+.| .+....++.+..+..|... +|.=
T Consensus 737 rAR~ildrarlkNPk~~-~lwle~Ir~ElR~gn---~~~a~~lmakALQecp~sg~LWaE 792 (913)
T KOG0495|consen 737 RARSILDRARLKNPKNA-LLWLESIRMELRAGN---KEQAELLMAKALQECPSSGLLWAE 792 (913)
T ss_pred hHHHHHHHHHhcCCCcc-hhHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCccchhHHH
Confidence 22344555444444322 223333344455666 4567788999999999887 4543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=91.13 E-value=4.1 Score=44.72 Aligned_cols=107 Identities=8% Similarity=-0.052 Sum_probs=79.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCC
Q 000134 1352 WLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSL 1429 (2096)
Q Consensus 1352 WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~ 1429 (2096)
|...+..+...|+++.|.....++....+ +.+....|.++...|+..+|+..++.++.-.|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p----------------- 89 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA----------------- 89 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----------------
Confidence 66778888999999999999888877754 46788899999999999999999998875211
Q ss_pred CCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000134 1430 VPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2096)
Q Consensus 1430 ~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y 1496 (2096)
.+ +.++.-+|.-+...|+ .++.++.|.+|+++.|.-...|...|.-
T Consensus 90 --~~-----------------~~a~~~lg~~l~~~g~--~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 90 --SH-----------------PEPVYQTGVCLKMMGE--PGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred --CC-----------------cHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 10 2344555554444444 7888899999999999877666555443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=91.04 E-value=3 Score=57.20 Aligned_cols=99 Identities=10% Similarity=0.014 Sum_probs=70.5
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~ 1124 (2096)
+||++.+++|.|.-|+..||..+.-..+ -...... -+...
T Consensus 91 ~La~i~~~~g~~~ea~~~l~~~~~~~Pd-------------------------------~~~a~~~---------~a~~L 130 (694)
T PRK15179 91 LVARALEAAHRSDEGLAVWRGIHQRFPD-------------------------------SSEAFIL---------MLRGV 130 (694)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhhCCC-------------------------------cHHHHHH---------HHHHH
Confidence 6899999999999999999998754221 1111110 01123
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhh
Q 000134 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKK 1183 (2096)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~ 1183 (2096)
.+.++.++|+.+++++++..|++.+.+.-+=.||.++|+|+......+.++...|+...
T Consensus 131 ~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~ 189 (694)
T PRK15179 131 KRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFEN 189 (694)
T ss_pred HHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHH
Confidence 36678888888888888888888888887888888888888877777766655554433
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.44 Score=44.82 Aligned_cols=54 Identities=9% Similarity=0.204 Sum_probs=46.9
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhcc-ChHHHHHHhhh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMC-HLQAMVTHVDG 1173 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LG-q~~~ll~~~~g 1173 (2096)
....+...|+|++|..+|+++++..|++.....++=.|+..+| +++..+.+.+.
T Consensus 9 ~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 9 LGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 4556788999999999999999999999999999999999999 78877666554
|
... |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.95 E-value=18 Score=45.54 Aligned_cols=97 Identities=20% Similarity=0.124 Sum_probs=67.7
Q ss_pred HHHHHHHHHhhhccCCh--hhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-hHHH
Q 000134 1309 KLMANWENRLKYTQPSL--WAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP-NVHM 1385 (2096)
Q Consensus 1309 ~l~~~W~~RL~~~~~~~--~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~-~~~i 1385 (2096)
.+...|+.||...-+.. ...+|++..=..-+.... +....|....++|+|++.+..|..++..|....+. +...
T Consensus 289 ~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~---~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~ 365 (400)
T COG3071 289 ALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHP---EDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYA 365 (400)
T ss_pred HHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCC---CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHH
Confidence 45567777765444432 333444433222222221 22357899999999999999999999998887654 5677
Q ss_pred HHHHHHHHcCCchHHHHHHHHHh
Q 000134 1386 EKAKLLWSTRRSDGAIAELQQNL 1408 (2096)
Q Consensus 1386 E~AKLLW~~g~~~~Ai~~L~~~i 1408 (2096)
+-|+.+=+.|+..+|=+.=+.++
T Consensus 366 ~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 366 ELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 88999999999999988777765
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=90.48 E-value=7.8 Score=45.62 Aligned_cols=177 Identities=18% Similarity=0.246 Sum_probs=101.9
Q ss_pred CChHHHHHHHHHHHHHHHHhccccccchhhHHHHHH-------HHhc--CCCcchhhhHHHHHHHHHhccCCCcchhhHH
Q 000134 511 EDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLM-------HAIN--KESLQCEGLSVLHFFIEQLSRVSPSSTKHVI 581 (2096)
Q Consensus 511 ~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~-------~aL~--~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll 581 (2096)
.+-..|..+|..|..+++--. -....+.+..+|+ ..+. ...+...|+.++..+...+.. ++++++
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~--~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~----~~~~~~ 92 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNA--PEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS----HFEPYA 92 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-------HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG----GGHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCC--ccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH----hHHHHH
Confidence 345666777777777766441 1123333333333 3332 234667888999999999863 599999
Q ss_pred HHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 000134 582 SQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAV 661 (2096)
Q Consensus 582 ~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~ 661 (2096)
+.++..|+.... +....+++.|...|..++.... +.+.+ .+..+.
T Consensus 93 ~~~l~~Ll~~~~---~~~~~i~~~a~~~L~~i~~~~~-----------~~~~~---------------------~~~~l~ 137 (228)
T PF12348_consen 93 DILLPPLLKKLG---DSKKFIREAANNALDAIIESCS-----------YSPKI---------------------LLEILS 137 (228)
T ss_dssp HHHHHHHHHGGG------HHHHHHHHHHHHHHHTTS------------H--HH---------------------HHHHHH
T ss_pred HHHHHHHHHHHc---cccHHHHHHHHHHHHHHHHHCC-----------cHHHH---------------------HHHHHH
Confidence 999988887776 3333455666666665543211 01111 123455
Q ss_pred hhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhccc
Q 000134 662 DGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGAL 739 (2096)
Q Consensus 662 ~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~I 739 (2096)
..++|.|+.||..++.-|...+......-. .......+.+++..+..+-.+.+ +++|..+-+|+..+
T Consensus 138 ~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~------~l~~~~~~~~l~~~l~~~l~D~~-----~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 138 QGLKSKNPQVREECAEWLAIILEKWGSDSS------VLQKSAFLKQLVKALVKLLSDAD-----PEVREAARECLWAL 204 (228)
T ss_dssp HHTT-S-HHHHHHHHHHHHHHHTT-----G------GG--HHHHHHHHHHHHHHHTSS------HHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHccchHh------hhcccchHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHH
Confidence 677899999999999999999988761100 00111235667777766666543 68999999998876
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=90.31 E-value=3.2 Score=45.56 Aligned_cols=110 Identities=7% Similarity=0.076 Sum_probs=76.0
Q ss_pred HHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHH
Q 000134 1372 ILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIA 1451 (2096)
Q Consensus 1372 ll~a~~~~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~A 1451 (2096)
+.+|.+.. |......+..+...|+.++|+..++.++...|. .+
T Consensus 16 ~~~al~~~-p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~------------------------------------~~ 58 (144)
T PRK15359 16 LKQLLSVD-PETVYASGYASWQEGDYSRAVIDFSWLVMAQPW------------------------------------SW 58 (144)
T ss_pred HHHHHHcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------------------------------------cH
Confidence 33444333 444556789999999999999999998753221 02
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHH
Q 000134 1452 KTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLF 1531 (2096)
Q Consensus 1452 ka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~ 1531 (2096)
.++..+|.-....|+ .++.+..|.+|++++|.+..+|+.+|..+... |. ...|+..
T Consensus 59 ~a~~~lg~~~~~~g~--~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~--------------g~--------~~eAi~~ 114 (144)
T PRK15359 59 RAHIALAGTWMMLKE--YTTAINFYGHALMLDASHPEPVYQTGVCLKMM--------------GE--------PGLAREA 114 (144)
T ss_pred HHHHHHHHHHHHHhh--HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc--------------CC--------HHHHHHH
Confidence 234444443333333 56788999999999999999999999976432 11 2358999
Q ss_pred HHHhhccCCcc
Q 000134 1532 YAKGLHRGHKN 1542 (2096)
Q Consensus 1532 Y~~sl~~g~~~ 1542 (2096)
|-+++...+.+
T Consensus 115 ~~~Al~~~p~~ 125 (144)
T PRK15359 115 FQTAIKMSYAD 125 (144)
T ss_pred HHHHHHhCCCC
Confidence 99999887764
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=90.26 E-value=12 Score=46.35 Aligned_cols=35 Identities=20% Similarity=0.158 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN 1382 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~~~~ 1382 (2096)
..+.|...+++..+.|+++.|..+..+|...++++
T Consensus 235 ~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 235 LCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 46689999999999999999999999998877554
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.23 E-value=3 Score=51.08 Aligned_cols=58 Identities=17% Similarity=0.114 Sum_probs=30.8
Q ss_pred HHHHhhhcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhh
Q 000134 6 SEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLS 70 (2096)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (2096)
.+.|--.|.|+...||.+|+..+.-+ .+ ..+|..+..+.+++...|++.-...||.|.
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~---~~----~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg 82 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLR---GG----QDVFRLAIELCSSKNPIERDIGADILSQLG 82 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhc---Cc----chHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 34444455666666666666554322 22 234444444555555566666666666654
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=89.74 E-value=86 Score=41.89 Aligned_cols=365 Identities=14% Similarity=0.155 Sum_probs=173.7
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchh
Q 000134 245 IKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKA 324 (2096)
Q Consensus 245 ~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~ 324 (2096)
++..+... +++..+.+...+..++.+. ...++.....-.|..-|-|+++.||..|.++|.+++.+. .+..+++..
T Consensus 43 lf~~L~~~-~~e~v~~~~~iL~~~l~~~-~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~-- 117 (503)
T PF10508_consen 43 LFDCLNTS-NREQVELICDILKRLLSAL-SPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLLVD-- 117 (503)
T ss_pred HHHHHhhc-ChHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHhcC--
Confidence 44545544 4444555567788887755 344446677788999999999999999999998886544 221222221
Q ss_pred hhhhhhhhHHHHHHhcCchHHHHHHHHHHhCCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCCCchhHHhh
Q 000134 325 VLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVT 404 (2096)
Q Consensus 325 ~~~~~~l~~~~~~~l~~rp~~~~~~~e~llg~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~~~~l~~~ 404 (2096)
+.+++.++..+...--.+.+.| .++|..||+. ......++.+
T Consensus 118 ----~~l~~~i~~~L~~~d~~Va~~A---------------------------------~~~L~~l~~~-~~~~~~l~~~ 159 (503)
T PF10508_consen 118 ----NELLPLIIQCLRDPDLSVAKAA---------------------------------IKALKKLASH-PEGLEQLFDS 159 (503)
T ss_pred ----ccHHHHHHHHHcCCcHHHHHHH---------------------------------HHHHHHHhCC-chhHHHHhCc
Confidence 2234444444433322233222 1233333321 1112223333
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHhhhcCCChH--HHHH--HhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhh
Q 000134 405 WIPKVLAFALHQADERRLLSALEFYCIQTGSDNQ--EIFA--AALPALLDELICFVDGGDSDEINERLNRVPRVIRKVST 480 (2096)
Q Consensus 405 ~~~~Ila~ll~~~~~~~~~~~l~~~~~~~~~~~~--~~~~--~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (2096)
++...|.-++.+++...-..++..+......+.. +... ..++.++.|| ... |.=.+ ..+.+.+..++.
T Consensus 160 ~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL----~~d--DiLvq--lnalell~~La~ 231 (503)
T PF10508_consen 160 NLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKEL----DSD--DILVQ--LNALELLSELAE 231 (503)
T ss_pred chHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHh----cCc--cHHHH--HHHHHHHHHHHc
Confidence 3333333344332222222233332222222211 1111 1233333333 332 21111 123444444442
Q ss_pred hccCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHH------HHHHHHHHHHHhcc-ccccchhhHHHHHHHHhc--C
Q 000134 481 VLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQ------ALKRIEILIEMIGS-HLTTYVPKILVLLMHAIN--K 551 (2096)
Q Consensus 481 ~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~------~l~sl~~li~l~g~-~v~~~~pqI~a~L~~aL~--~ 551 (2096)
...-..||.+. |++..+.+.+.++..-+ +-. .|+..|.|-.. .+ .+....|+++.+|...++ .
T Consensus 232 ----~~~g~~yL~~~--gi~~~L~~~l~~~~~dp-~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d 303 (503)
T PF10508_consen 232 ----TPHGLQYLEQQ--GIFDKLSNLLQDSEEDP-RLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLESQD 303 (503)
T ss_pred ----ChhHHHHHHhC--CHHHHHHHHHhccccCC-cccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCC
Confidence 34446777775 77766665554432111 111 23444554444 33 566677999999998775 5
Q ss_pred CCcchhhhHHHHHHHHHhccCCCcch----hhHHHHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhccc
Q 000134 552 ESLQCEGLSVLHFFIEQLSRVSPSST----KHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHE 627 (2096)
Q Consensus 552 ~~L~~~~l~~W~~fv~~L~~~~~~~l----~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~ 627 (2096)
+..+..|+.+|..+-.+.+.. .-| ++-+..++..+-.+.. ..+...+-.+.+-|..++.-
T Consensus 304 ~~~~~~A~dtlg~igst~~G~--~~L~~~~~~~~~~~l~~~~~~~~---~~~~~lk~r~l~al~~il~~----------- 367 (503)
T PF10508_consen 304 PTIREVAFDTLGQIGSTVEGK--QLLLQKQGPAMKHVLKAIGDAIK---SGSTELKLRALHALASILTS----------- 367 (503)
T ss_pred hhHHHHHHHHHHHHhCCHHHH--HHHHhhcchHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHHhc-----------
Confidence 668889999999876653220 111 1112222222222222 22223344455555444311
Q ss_pred CCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHH
Q 000134 628 FPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSE 688 (2096)
Q Consensus 628 lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~ 688 (2096)
+.-+.-..+..+....-+.-+.-+... .++..++.-=+++|.-|+.=|..+..+.-.
T Consensus 368 -~~~~~~~~i~~~~~~w~~~~~~~~~~~---~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg 424 (503)
T PF10508_consen 368 -GTDRQDNDILSITESWYESLSGSPLSN---LLMSLLKQPFPELRCAAYRLLQALAAQPWG 424 (503)
T ss_pred -CCCCchHHHHHHHHHHHHHhcCCchHH---HHHHHhcCCchHHHHHHHHHHHHHhcCHHH
Confidence 111111222222222222222222222 455556554478899888888887776543
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=89.64 E-value=1.5 Score=46.72 Aligned_cols=83 Identities=13% Similarity=0.142 Sum_probs=63.7
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCc---hhhhhhHHHHHHhccChHHHHHHhhhhhccChh--hhhhHhHHHHHHH
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTS---VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ--YKKTWCMQGVQAA 1193 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~---~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~--~~~~~~~~~vEAA 1193 (2096)
+....|...|+.++|...|++++....+. ....+++=.++.++|+++..+...+......|+ +...+..+..-+.
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 34567889999999999999999976554 345678888999999999888777766666554 3344555666788
Q ss_pred HhcCChhh
Q 000134 1194 WRLGRWDL 1201 (2096)
Q Consensus 1194 Wrlg~Wd~ 1201 (2096)
+..|+++.
T Consensus 86 ~~~gr~~e 93 (120)
T PF12688_consen 86 YNLGRPKE 93 (120)
T ss_pred HHCCCHHH
Confidence 89999865
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=89.00 E-value=4.9 Score=41.33 Aligned_cols=103 Identities=18% Similarity=0.176 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1350 NCWLQYAKLCRLAGHYETATRAILEAQASGA-----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~all~a~~~~~-----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
+.+...+....+.|.++.|...+.++....+ +.+.+..+..+.+.|+..+|+..++..+...|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----------- 71 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK----------- 71 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC-----------
Confidence 5678889999999999999999988876543 347888999999999999999999988753221
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~we 1487 (2096)
. +..+.+++.+|..+...++ .++..+.|.++++..|...
T Consensus 72 --------~--------------~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 72 --------S--------------PKAPDALLKLGMSLQELGD--KEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred --------C--------------CcccHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHCcCCh
Confidence 0 0113345566665555443 6778888899988888654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=88.90 E-value=1.3 Score=41.60 Aligned_cols=62 Identities=15% Similarity=0.205 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcC-CchHHHHHHHHHhh
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTR-RSDGAIAELQQNLL 1409 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g-~~~~Ai~~L~~~i~ 1409 (2096)
.+..|...|....+.|.++.|.....+|.++.+ +.+..-.+..++..| +..+|++.++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 467899999999999999999999999998865 457889999999999 68999999999876
|
... |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=88.50 E-value=4.4 Score=51.85 Aligned_cols=115 Identities=17% Similarity=0.250 Sum_probs=85.8
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1344 LGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1344 ~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
.+..+.+..+++- ...++++.|.+.+.+..+. .|++.+--||++-..++..+|++.++++++..|..
T Consensus 167 ~~NyLv~~Ll~~l---~~t~~~~~ai~lle~L~~~-~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d--------- 233 (395)
T PF09295_consen 167 VNNYLVDTLLKYL---SLTQRYDEAIELLEKLRER-DPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQD--------- 233 (395)
T ss_pred cchHHHHHHHHHH---hhcccHHHHHHHHHHHHhc-CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC---------
Confidence 3445555555554 4467899999888887654 47777778999999999999999999998643210
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l 1500 (2096)
+..+...++++...++ .+.+.+..++|+++.|.--++|+.||+.|=++
T Consensus 234 ---------------------------~~LL~~Qa~fLl~k~~--~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~ 281 (395)
T PF09295_consen 234 ---------------------------SELLNLQAEFLLSKKK--YELALEIAKKAVELSPSEFETWYQLAECYIQL 281 (395)
T ss_pred ---------------------------HHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence 3345555666665554 47888899999999999999999999998543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.50 E-value=2.7 Score=50.76 Aligned_cols=98 Identities=16% Similarity=0.063 Sum_probs=76.2
Q ss_pred HHHHcCChHHHHHHHHHHhhcCCCh--HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCC
Q 000134 1358 LCRLAGHYETATRAILEAQASGAPN--VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPL 1435 (2096)
Q Consensus 1358 lARKag~~~~A~~all~a~~~~~~~--~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1435 (2096)
=+-|+|.|+.|..--.+|..+.+.+ .+--+|--+-+-|+...||+-.+.+|.-
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------------------------- 144 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI------------------------- 144 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-------------------------
Confidence 3568899999999999999987554 4557899999999999999999887651
Q ss_pred CcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHH
Q 000134 1436 PVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYM 1493 (2096)
Q Consensus 1436 ~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~l 1493 (2096)
++...|+|..+|.-.... ...++.+..|++|++++|.|+-.+-.|
T Consensus 145 -----------Dp~yskay~RLG~A~~~~--gk~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 145 -----------DPHYSKAYGRLGLAYLAL--GKYEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred -----------ChHHHHHHHHHHHHHHcc--CcHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 123478888888765444 447888888999999999998444333
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=88.26 E-value=12 Score=53.36 Aligned_cols=149 Identities=13% Similarity=0.135 Sum_probs=99.1
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH-h-ccCChhH-HH
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-H-KSLSLQD-EL 1121 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~-~-~~~sl~~-qi 1121 (2096)
.++.+..+.|.|..|+.+++.-.... | .....-.+..++.+.++++........ . ..++... ..
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~~-----p--------~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~ 580 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLHD-----M--------SNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYW 580 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhccC-----C--------CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHH
Confidence 45677789999999999998743321 1 012344667788889999887776542 1 1122111 11
Q ss_pred H---HhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCC
Q 000134 1122 L---SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2096)
Q Consensus 1122 l---~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~ 1198 (2096)
. ..+..|++++|..+|+++++..|+ .+...++-.++.++|+++......+......|+...-+..++ -+....|+
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG-~aL~~~G~ 658 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALG-YALWDSGD 658 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHCCC
Confidence 1 223449999999999999999996 777788888999999999988877776666665543333332 23445677
Q ss_pred hhhHHHhhcc
Q 000134 1199 WDLMDEYLSG 1208 (2096)
Q Consensus 1199 Wd~l~~~l~~ 1208 (2096)
++.-.+.+..
T Consensus 659 ~eeAi~~l~~ 668 (987)
T PRK09782 659 IAQSREMLER 668 (987)
T ss_pred HHHHHHHHHH
Confidence 7665554443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=87.83 E-value=19 Score=48.53 Aligned_cols=109 Identities=14% Similarity=-0.019 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHH--HhccCCh----hHHHHHhHhh
Q 000134 1054 QAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLAR--LHKSLSL----QDELLSNKKS 1127 (2096)
Q Consensus 1054 ~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~--~~~~~sl----~~qil~~E~~ 1127 (2096)
+.+.+|+-+++.-+.-. |. ....+..|..+|...+++|...-... +...|+- ......+...
T Consensus 318 ~~~~~A~~~~~~Al~ld-----P~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 385 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-----HN-------NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMA 385 (553)
T ss_pred hHHHHHHHHHHHHHhcC-----CC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 34677777777665432 21 12344556667776776665555433 1222221 1123345667
Q ss_pred cCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhh
Q 000134 1128 GNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGL 1174 (2096)
Q Consensus 1128 G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl 1174 (2096)
|++++|..+|+++++..|.+.......+..+...|+++......+..
T Consensus 386 G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 386 GQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred CCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 77777777777777777765543333333344466666655555443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=87.69 E-value=1.4e+02 Score=41.63 Aligned_cols=321 Identities=11% Similarity=0.004 Sum_probs=170.7
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhcc---CChhHH
Q 000134 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKS---LSLQDE 1120 (2096)
Q Consensus 1044 ~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~---~sl~~q 1120 (2096)
..+..+..+++.+..|...++.-.+.. ..| ....+..|...|++.++.|.+..+...... .+-+.-
T Consensus 127 ~~ll~a~~~~~~~~~a~~l~~~m~~~g---~~~--------~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~l 195 (697)
T PLN03081 127 DALVEACIALKSIRCVKAVYWHVESSG---FEP--------DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTI 195 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhC---CCc--------chHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHH
Confidence 345566667777766655555433221 111 234688999999999999999998764322 344555
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCC-chhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCCh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPT-SVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~-~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~W 1199 (2096)
+-.|-+.|++++|+..|+..++..+. +......+++++.++|..+.......-+....-......+..-+.+--+.|++
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 275 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCH
Confidence 66789999999999999987765432 23334567888777777654322211111000000111122335666678888
Q ss_pred hhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhhh
Q 000134 1200 DLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHL 1279 (2096)
Q Consensus 1200 d~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH~ 1279 (2096)
+...+....+... ....|+. +..++ .+.++.++..+...+++.. .+... ..+|...-....++..
T Consensus 276 ~~A~~vf~~m~~~--------~~vt~n~-li~~y--~~~g~~~eA~~lf~~M~~~---g~~pd-~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 276 EDARCVFDGMPEK--------TTVAWNS-MLAGY--ALHGYSEEALCLYYEMRDS---GVSID-QFTFSIMIRIFSRLAL 340 (697)
T ss_pred HHHHHHHHhCCCC--------ChhHHHH-HHHHH--HhCCCHHHHHHHHHHHHHc---CCCCC-HHHHHHHHHHHHhccc
Confidence 8887777665531 1223432 33233 2445555555444444332 11111 2255555555555555
Q ss_pred hhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHH
Q 000134 1280 LQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLC 1359 (2096)
Q Consensus 1280 L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklA 1359 (2096)
+.+-+++...+.. .+...+......+.+..-. ...+..=+ .+|... ......+|-....-.
T Consensus 341 ~~~a~~i~~~m~~-----~g~~~d~~~~~~Li~~y~k-----~G~~~~A~-------~vf~~m--~~~d~~t~n~lI~~y 401 (697)
T PLN03081 341 LEHAKQAHAGLIR-----TGFPLDIVANTALVDLYSK-----WGRMEDAR-------NVFDRM--PRKNLISWNALIAGY 401 (697)
T ss_pred hHHHHHHHHHHHH-----hCCCCCeeehHHHHHHHHH-----CCCHHHHH-------HHHHhC--CCCCeeeHHHHHHHH
Confidence 5555554443321 0001111111122222111 00111000 011110 001124688888888
Q ss_pred HHcCChHHHHHHHHHHhhcCC-Ch--HHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1360 RLAGHYETATRAILEAQASGA-PN--VHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1360 RKag~~~~A~~all~a~~~~~-~~--~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
-++|+.+.|...+.+....|. |+ .+.--..-+-+.|..++|.+.++...+
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 889999999988888776652 33 233334455677888889888887654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.58 E-value=66 Score=43.05 Aligned_cols=47 Identities=6% Similarity=-0.053 Sum_probs=28.9
Q ss_pred hhcCHHHHHHHHHHHHccCCCchhhhhhHHH-----HHHhccChHHHHHHhhhhhcc
Q 000134 1126 KSGNWAEVFTSCEQALQMEPTSVQRHSDVLN-----CLLNMCHLQAMVTHVDGLISR 1177 (2096)
Q Consensus 1126 ~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~-----CL~~LGq~~~ll~~~~gl~~~ 1177 (2096)
+.-+|.+|..+|+...+..++. ||.. .+.+++.|+......+-+...
T Consensus 331 s~y~~~~A~~~~~klp~h~~nt-----~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~ 382 (638)
T KOG1126|consen 331 SQYNCREALNLFEKLPSHHYNT-----GWVLSQLGRAYFELIEYDQAERIFSLVRRI 382 (638)
T ss_pred HHHHHHHHHHHHHhhHHhcCCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4458999999999844433332 3433 345677777766665554433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=87.33 E-value=5.9 Score=54.37 Aligned_cols=112 Identities=14% Similarity=0.117 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
.+.....|++....|+++.|...+..+.++.+ ..+.+..|..|-+.++.++|+...++.+...|
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-------------- 151 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-------------- 151 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC--------------
Confidence 34556677777788888888887777776653 35777788888888888888887777764211
Q ss_pred cCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d 1498 (2096)
+.+.++..+|.-+.+.|+ .++....|.++..-+|.-+++|..+|.-+.
T Consensus 152 ----------------------~~~~~~~~~a~~l~~~g~--~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~ 199 (694)
T PRK15179 152 ----------------------SSAREILLEAKSWDEIGQ--SEQADACFERLSRQHPEFENGYVGWAQSLT 199 (694)
T ss_pred ----------------------CCHHHHHHHHHHHHHhcc--hHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 114456666776666665 677777788777777777777777777553
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=87.14 E-value=1.6e+02 Score=41.79 Aligned_cols=124 Identities=12% Similarity=0.135 Sum_probs=96.8
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccC-Ch---hHH
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSL-SL---QDE 1120 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~-sl---~~q 1120 (2096)
.-+...++-|.|..|+-++++..+..+.+ ...+..|..+|..++..+.+.-.+.....+ +. ...
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~------------~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPLQ------------SGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCccc------------hhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence 44667889999999999999987653211 112347889999999999888877643222 11 112
Q ss_pred --HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChh
Q 000134 1121 --LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2096)
Q Consensus 1121 --il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~ 1180 (2096)
+..+...|+|++|.+.|+++++.+|++.+...|+...+...|+.+..+..++.+....|+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT 168 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc
Confidence 336788999999999999999999999999899988889999999999999888777665
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.83 E-value=1.2 Score=42.26 Aligned_cols=57 Identities=14% Similarity=0.330 Sum_probs=48.5
Q ss_pred HhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccCh
Q 000134 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2096)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p 1179 (2096)
.|.+.++|++|..++|.+++..|++.......=.|+..+|.|+......+..+...|
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 367889999999999999999999998888888899999999988777776665555
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=86.58 E-value=1.7e+02 Score=41.68 Aligned_cols=317 Identities=11% Similarity=-0.009 Sum_probs=168.6
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhcc---CChhHH
Q 000134 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKS---LSLQDE 1120 (2096)
Q Consensus 1044 ~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~---~sl~~q 1120 (2096)
..+..+..+.+....|.-.++.-.+.. ..| ....+..|+..|...++.|.+..+...... .+-+.-
T Consensus 292 ~~ll~a~~~~g~~~~a~~l~~~~~~~g---~~~--------d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~l 360 (857)
T PLN03077 292 TSVISACELLGDERLGREMHGYVVKTG---FAV--------DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAM 360 (857)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhC---Ccc--------chHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHH
Confidence 345556666666666655555433321 111 235689999999999999999999764332 344556
Q ss_pred HHHhHhhcCHHHHHHHHHHHHcc--CCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCC
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQM--EPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~--~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~ 1198 (2096)
|..|-+.|++++|+..|+...+. .|+..+ ...++..+.+.|+++......+-+...-.......+..-+.+-.+.|+
T Consensus 361 i~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 439 (857)
T PLN03077 361 ISGYEKNGLPDKALETYALMEQDNVSPDEIT-IASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCCcee-HHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC
Confidence 77899999999999999976543 465543 446788888889988765544433222111112223344667778899
Q ss_pred hhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhh
Q 000134 1199 WDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLH 1278 (2096)
Q Consensus 1199 Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH 1278 (2096)
++...+.+..+... ...+|+. +..++ ..+++..+..+...+++. .+.+ ...+|........++-
T Consensus 440 ~~~A~~vf~~m~~~--------d~vs~~~-mi~~~--~~~g~~~eA~~lf~~m~~----~~~p-d~~t~~~lL~a~~~~g 503 (857)
T PLN03077 440 IDKALEVFHNIPEK--------DVISWTS-IIAGL--RLNNRCFEALIFFRQMLL----TLKP-NSVTLIAALSACARIG 503 (857)
T ss_pred HHHHHHHHHhCCCC--------CeeeHHH-HHHHH--HHCCCHHHHHHHHHHHHh----CCCC-CHhHHHHHHHHHhhhc
Confidence 99888877766532 1234543 22233 234444433333333322 1111 1224444444444444
Q ss_pred hhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHH
Q 000134 1279 LLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKL 1358 (2096)
Q Consensus 1279 ~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~Akl 1358 (2096)
.+.+-.++...... .+...+......+.+.+-. ...++.- . .+|... .....+|-.....
T Consensus 504 ~l~~~~~i~~~~~~-----~g~~~~~~~~naLi~~y~k-----~G~~~~A--~-----~~f~~~---~~d~~s~n~lI~~ 563 (857)
T PLN03077 504 ALMCGKEIHAHVLR-----TGIGFDGFLPNALLDLYVR-----CGRMNYA--W-----NQFNSH---EKDVVSWNILLTG 563 (857)
T ss_pred hHHHhHHHHHHHHH-----hCCCccceechHHHHHHHH-----cCCHHHH--H-----HHHHhc---CCChhhHHHHHHH
Confidence 44444444333211 0000111111122222211 0111100 0 011111 1123467777777
Q ss_pred HHHcCChHHHHHHHHHHhhcCC-Ch--HHHHHHHHHHHcCCchHHHHHHHHHh
Q 000134 1359 CRLAGHYETATRAILEAQASGA-PN--VHMEKAKLLWSTRRSDGAIAELQQNL 1408 (2096)
Q Consensus 1359 ARKag~~~~A~~all~a~~~~~-~~--~~iE~AKLLW~~g~~~~Ai~~L~~~i 1408 (2096)
.-++|+.+.|.....+....+. |+ .+.--..-+-+.|..++|.+.++...
T Consensus 564 ~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 7888888888888777665542 22 12222234566777888888887765
|
|
| >smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain) | Back alignment and domain information |
|---|
Probab=86.04 E-value=3.2 Score=47.63 Aligned_cols=127 Identities=13% Similarity=0.110 Sum_probs=76.2
Q ss_pred HHHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhhHhHHHHHHHHHHhhcCCCCCchhhhhhHHhhhc
Q 000134 1526 PDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSR 1605 (2096)
Q Consensus 1526 ~~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iP~~~wl~~lPQLisR 1605 (2096)
+.++.-|++|+...+.........++.-|-..+....-.- -...+ .+..|....-+.+...|....+.++||||+.
T Consensus 43 p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~~~~~~aL~L--L~~~~--~~~~Vr~yAV~~L~~~~d~~l~~yLpQLVQa 118 (184)
T smart00145 43 PKALPKFLLSVNWSDADEVAQALSLLKKWAPLDPEDALEL--LSPKF--PDPFVRAYAVERLESASDEELLLYLLQLVQA 118 (184)
T ss_pred hHHHHHHHhcCCCCCHHHHHHHHHHHHcCCCCCHHHHHHH--hCccC--CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3577778888888877655566678888854332100000 00000 1234555555678899999999999999999
Q ss_pred cccCchHHHHHHHHHHHHHHH--hchhhHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 000134 1606 ICHQNEEIVRLVKHIITSVLR--QYPQQGLWIMAAVSKSTIPSRREAAAEIIQAA 1658 (2096)
Q Consensus 1606 l~h~~~~v~~~l~~il~kv~~--~yPqq~lw~l~~~~~S~~~~R~~~~~~Il~~~ 1658 (2096)
+.+....-..+..-||.+... .+-|+.+|.+.+-+.. +.-..+...+++.+
T Consensus 119 Lr~E~~~~~~L~~fLl~ra~~s~~~~~~l~W~L~~e~~~--~~~~~r~~~~le~~ 171 (184)
T smart00145 119 LKYEPYLDSALARFLLERALKNQRLGHFFYWYLKSELED--PHYSIRFGLLLEAY 171 (184)
T ss_pred HHcccccccHHHHHHHHHHhhCHHHHHHHHHHHHHHccC--chhHHHHHHHHHHH
Confidence 988732223444444444443 3578899999877633 22334444444443
|
PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=86.02 E-value=8.5 Score=36.15 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--hHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1351 CWLQYAKLCRLAGHYETATRAILEAQASGAP--NVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~all~a~~~~~~--~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
.|...|......|.++.|...+.++....+. .+....|..++..|+..+|+..++..+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788888999999999999999888766443 5777889999999999999999988765
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=85.90 E-value=1.4 Score=43.38 Aligned_cols=78 Identities=14% Similarity=0.279 Sum_probs=54.4
Q ss_pred hcCHHHHHHHHHHHHccCCCc--hhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhhHHH
Q 000134 1127 SGNWAEVFTSCEQALQMEPTS--VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDE 1204 (2096)
Q Consensus 1127 ~G~W~~A~~~YE~~Lq~~p~~--~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l~~ 1204 (2096)
.|+|++|+..||+.++..|++ ......+-.|+.++|+|+..+...+. ....+.. ....-+..+|...+|+|+.-.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHHH
Confidence 589999999999999999953 34455678999999999988887765 2222211 1222344789999999987655
Q ss_pred hh
Q 000134 1205 YL 1206 (2096)
Q Consensus 1205 ~l 1206 (2096)
.+
T Consensus 80 ~l 81 (84)
T PF12895_consen 80 AL 81 (84)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=85.39 E-value=3.3 Score=44.10 Aligned_cols=86 Identities=9% Similarity=0.088 Sum_probs=62.9
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCCh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~W 1199 (2096)
....+...|+..+|..+|+.+++..|++......+-.|+..+|+++......+......|+....+.. ...+-+..|+|
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-la~~~~~~g~~ 101 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH-AAECLLALGEP 101 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH-HHHHHHHcCCH
Confidence 34456688999999999999999999988888888899999999988777666554444543333332 33477888888
Q ss_pred hhHHHhh
Q 000134 1200 DLMDEYL 1206 (2096)
Q Consensus 1200 d~l~~~l 1206 (2096)
+.-.+++
T Consensus 102 ~~A~~~~ 108 (135)
T TIGR02552 102 ESALKAL 108 (135)
T ss_pred HHHHHHH
Confidence 8765544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=85.30 E-value=4.4 Score=51.43 Aligned_cols=89 Identities=15% Similarity=0.220 Sum_probs=69.6
Q ss_pred hHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcC
Q 000134 1118 QDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197 (2096)
Q Consensus 1118 ~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg 1197 (2096)
..+....-..|+|++|..+|+++++..|++.....++-.|+..+|+++..+..++..+...|....-+. ....+...+|
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~-~lg~~~~~lg 84 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYL-RKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHH-HHHHHHHHhC
Confidence 345666778899999999999999999999999989999999999999988888776666665444333 2345667889
Q ss_pred ChhhHHHhhc
Q 000134 1198 RWDLMDEYLS 1207 (2096)
Q Consensus 1198 ~Wd~l~~~l~ 1207 (2096)
+|+.-.+++.
T Consensus 85 ~~~eA~~~~~ 94 (356)
T PLN03088 85 EYQTAKAALE 94 (356)
T ss_pred CHHHHHHHHH
Confidence 9887655544
|
|
| >cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases | Back alignment and domain information |
|---|
Probab=84.95 E-value=4 Score=46.26 Aligned_cols=127 Identities=17% Similarity=0.222 Sum_probs=81.2
Q ss_pred HHHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhhHhHHHHHHHHHHhhcCCCCCchhhhhhHHhhhc
Q 000134 1526 PDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSR 1605 (2096)
Q Consensus 1526 ~~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iP~~~wl~~lPQLisR 1605 (2096)
+.++..+++|+...+......+..+|.-|-.......-. --...+ ....|.+..-+.++.+|......++||||+.
T Consensus 38 p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~i~~~~aLe--LL~~~f--~d~~VR~yAV~~L~~~sd~eL~~yL~QLVQa 113 (171)
T cd00872 38 PQALPKLLLSVKWNKRDDVAQMYQLLKRWPKLKPEQALE--LLDCNF--PDEHVREFAVRCLEKLSDDELLQYLLQLVQV 113 (171)
T ss_pred cHHHHHHHhhCCCCCHHHHHHHHHHHHCCCCCCHHHHHH--HCCCcC--CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 357888899999888766667778888894432210000 000000 1134555555678899999999999999999
Q ss_pred cccCchHHHHHHHHHHHHHHHh--chhhHHHHHHHhhcCCChhHHHHHHHHHHHH
Q 000134 1606 ICHQNEEIVRLVKHIITSVLRQ--YPQQGLWIMAAVSKSTIPSRREAAAEIIQAA 1658 (2096)
Q Consensus 1606 l~h~~~~v~~~l~~il~kv~~~--yPqq~lw~l~~~~~S~~~~R~~~~~~Il~~~ 1658 (2096)
+.+....-..+..-+|.|...+ .-|+.+|.+.+-+.. +.-+.|...|++..
T Consensus 114 LKyE~~~ds~La~FLl~Ral~n~~igh~lfW~L~~E~~~--~~~~~R~~~~le~~ 166 (171)
T cd00872 114 LKYEPYHDSDLVRFLLKRALRNQRIGHFFFWHLRSEMHN--PSVSQRFGLLLEAY 166 (171)
T ss_pred HHcccccCCHHHHHHHHHHhcCHHHHHHHHHHHHHhhcC--hHHHHHHHHHHHHH
Confidence 9986533345556666666544 578889999876543 33344555555544
|
Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways. |
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=84.53 E-value=5.2 Score=39.37 Aligned_cols=86 Identities=17% Similarity=0.307 Sum_probs=64.9
Q ss_pred HHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCc
Q 000134 151 IYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDE 230 (2096)
Q Consensus 151 ~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~ 230 (2096)
.+.+.|..+.+..|+..++..|.++ +. .+-+.+|-.++.|++..||.+++.++..+
T Consensus 3 ~L~~~l~~~~~~~vr~~a~~~L~~~---~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i------------- 58 (88)
T PF13646_consen 3 ALLQLLQNDPDPQVRAEAARALGEL---GD--------PEAIPALIELLKDEDPMVRRAAARALGRI------------- 58 (88)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHCC---TH--------HHHHHHHHHHHTSSSHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc---CC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh-------------
Confidence 3667777889999999999998833 22 12455777777999999999999999873
Q ss_pred ccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHH
Q 000134 231 NASSRSNELKLLDVIKLAFTAADDPLILETLLESTA 266 (2096)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~ 266 (2096)
.....+..+.+.+...++..++++++.++|
T Consensus 59 ------~~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 59 ------GDPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ------HHHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ------CCHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 123456677777888888888999988876
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=84.43 E-value=20 Score=44.30 Aligned_cols=103 Identities=16% Similarity=-0.003 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
..+..|...+.+-.+.|.++.|.....+|.+..+ +.+....+.++...|+.++|+..++++++-.|
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P------------ 129 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP------------ 129 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------------
Confidence 4477899999999999999999999999988753 56888899999999999999999998875211
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~we 1487 (2096)
. .+.++..+|..+...| ..++.++.|.++++.+|...
T Consensus 130 -------~-----------------~~~a~~~lg~~l~~~g--~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 130 -------T-----------------YNYAYLNRGIALYYGG--RYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred -------C-----------------CHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCH
Confidence 1 1335566666555555 47888999999999999764
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=84.39 E-value=1.5e+02 Score=39.87 Aligned_cols=75 Identities=13% Similarity=0.142 Sum_probs=42.3
Q ss_pred cccCCChhhHHHHHHHhhcc---cCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHh
Q 000134 139 LNFHSDFSFLLNIYFEFLYD---ESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIG 215 (2096)
Q Consensus 139 ~~~~~~~~~~~~~~~~~l~~---~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~ 215 (2096)
..|=-.|+.++.--++-++| ..+..||+..|+.|+.++++..+.+. ...--|--||...+...+.+.-.++-
T Consensus 47 ~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~-----kvaDvL~QlL~tdd~~E~~~v~~sL~ 121 (556)
T PF05918_consen 47 PKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS-----KVADVLVQLLQTDDPVELDAVKNSLM 121 (556)
T ss_dssp HHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH-----HHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred HHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh-----HHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34445677788877777666 66677999999999999999653320 01111222457777777777766666
Q ss_pred Hhh
Q 000134 216 YFL 218 (2096)
Q Consensus 216 ~~~ 218 (2096)
.++
T Consensus 122 ~ll 124 (556)
T PF05918_consen 122 SLL 124 (556)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=83.98 E-value=4.5 Score=41.61 Aligned_cols=88 Identities=14% Similarity=0.113 Sum_probs=58.8
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCc---hhhhhhHHHHHHhccChHHHHHHhhhhhccChhhh--hhHhHHHHHHHH
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTS---VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK--KTWCMQGVQAAW 1194 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~---~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~--~~~~~~~vEAAW 1194 (2096)
.+..+...|+|++|...|+.+++..|++ .+.+..+-+|+...|+++....+.+.+....|+.. .........+..
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 3455677899999999999988888875 34556678888899999888887776665544421 112223344555
Q ss_pred hcCChhhHHHhhc
Q 000134 1195 RLGRWDLMDEYLS 1207 (2096)
Q Consensus 1195 rlg~Wd~l~~~l~ 1207 (2096)
.+|+++.-.+++.
T Consensus 88 ~~~~~~~A~~~~~ 100 (119)
T TIGR02795 88 ELGDKEKAKATLQ 100 (119)
T ss_pred HhCChHHHHHHHH
Confidence 6777766555443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=83.54 E-value=5.2 Score=45.99 Aligned_cols=129 Identities=17% Similarity=0.167 Sum_probs=79.6
Q ss_pred HHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhhHhHHHHHHHHHHhhcCCCCCchhhhhhHHhhhcc
Q 000134 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRI 1606 (2096)
Q Consensus 1527 ~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iP~~~wl~~lPQLisRl 1606 (2096)
.++..+++|+...+.........+|.-|-.......-. --...+. ...|....-+.++.+|......++||||..|
T Consensus 45 ~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~~~p~~AL~--LL~~~f~--~~~VR~yAv~~L~~~~d~~l~~yLpQLVQaL 120 (184)
T PF00613_consen 45 EALPKLLRSVDWWNPEEVSEAYQLLLQWPPISPEDALE--LLSPNFP--DPFVRQYAVRRLESLSDEELLFYLPQLVQAL 120 (184)
T ss_dssp GGHHHHHTTSTTTSHHHHHHHHHHHHTSHCTTHHHHHH--CTSTT-----HHHHHHHHHHHCTS-HHHHHHHHHHHHHHG
T ss_pred hHHHHHHhhCCCCchhhHHHHHHHHHcCCCCCHHHHHH--HHHhhcc--HHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 46667788888776655556667777784432110000 0000111 1346666667789999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHHHHh--chhhHHHHHHHhhcCCChhHHHHHHHHHHHHHhc
Q 000134 1607 CHQNEEIVRLVKHIITSVLRQ--YPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKG 1661 (2096)
Q Consensus 1607 ~h~~~~v~~~l~~il~kv~~~--yPqq~lw~l~~~~~S~~~~R~~~~~~Il~~~~~~ 1661 (2096)
.+.......+..-||.+...+ .-|+.+|.+.+-. ..+.-..+...+++.+...
T Consensus 121 r~e~~~~s~L~~fLl~ra~~s~~ia~~l~W~L~~e~--~~~~~~~r~~~~~~~~l~~ 175 (184)
T PF00613_consen 121 RYEPYHDSPLARFLLRRALKSPRIAHQLFWYLKAEL--HDPEYSERYQLLLEAFLDG 175 (184)
T ss_dssp GGSSSSS-HHHHHHHHHHHHSHHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHHH
T ss_pred eeccccccHHHHHHHHHHHhCHHHHHHHHHHHHHhc--cCccHHHHHHHHHHHHHHH
Confidence 988444455666666665544 5788999998876 3333455566666665443
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A .... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=83.42 E-value=5 Score=37.24 Aligned_cols=63 Identities=29% Similarity=0.447 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHh
Q 000134 1385 MEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT 1464 (2096)
Q Consensus 1385 iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~ 1464 (2096)
+..|+.++..|+..+|+..+++.++..| ..+.+++.+|......
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P------------------------------------~~~~a~~~lg~~~~~~ 44 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDP------------------------------------DNPEAWYLLGRILYQQ 44 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCST------------------------------------THHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCC------------------------------------CCHHHHHHHHHHHHHc
Confidence 3578999999999999999999876322 2256788888877766
Q ss_pred CCCCHHHHHHHHHHHHHhccc
Q 000134 1465 GQKQKEDVITLYSRVRELQPM 1485 (2096)
Q Consensus 1465 ~~~~~~~i~~~Y~~a~~l~~~ 1485 (2096)
|+ .++.+..|+++++..|.
T Consensus 45 g~--~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 45 GR--YDEALAYYERALELDPD 63 (65)
T ss_dssp T---HHHHHHHHHHHHHHSTT
T ss_pred CC--HHHHHHHHHHHHHHCcC
Confidence 65 77788999999998885
|
|
| >KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.25 E-value=0.098 Score=76.32 Aligned_cols=233 Identities=6% Similarity=-0.150 Sum_probs=159.5
Q ss_pred CCCcceEEEEEecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcceeEecCCCc
Q 000134 1762 SLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTR 1841 (2096)
Q Consensus 1762 S~q~PkrI~i~gsDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~ 1841 (2096)
+...+|..+-.+++++......|..+++|+++-.++- ...| .+.|.+.+-..+|.++++..+-+|-+|+.|+.
T Consensus 2174 ~~~~~~~sse~et~~~l~k~~~~~~~~~~er~~q~~~-~~~~------~~~rq~~lDe~~l~~l~~~r~~fL~~Alt~Yl 2246 (2806)
T KOG0892|consen 2174 EDEERRSSSEFETLKDLQKLERSTVEASNEREEQMRK-NHHV------RVQRQLILDEEELLALSEDRSKFLTLALTNYL 2246 (2806)
T ss_pred hHHHHHhHHHHhhHHHHHHHHHhhhhhhHHHHHHHHH-HHHH------HHHHHHhccHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4456777778888888877778888999998877775 2333 34455678889999999999989888888765
Q ss_pred cHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCC---hHHHHHHhhc----CCCchHHHHHHHh---hCCChhHHHH
Q 000134 1842 GLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIP---EDEMLKTKIL----PMFPPVFHKWFLT---TFSEPAAWFR 1911 (2096)
Q Consensus 1842 tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~----~~~~pvl~~wf~~---~f~~p~~w~~ 1911 (2096)
..-.. .....+..+.|....+-.... -...+++++. .+|-|++++.--+ ...++-.|..
T Consensus 2247 ~cl~~-----------~~~~D~~~i~R~cslWfsns~~~evn~~mk~~i~~ipsyKFip~~yQlAaRl~~~~~~~fq~~L 2315 (2806)
T KOG0892|consen 2247 NCLSE-----------SDEYDVDLIFRCCSLWFSNSHLKEVNNSLKHEIQTVPSYKFIPLVYQLAARLGNSENNSFQKSL 2315 (2806)
T ss_pred HHHhh-----------cccccHHHHHHHhhhhccccchHHHHHHHHHHhccCCcchhHHHHHHHHHHhccccCchHHHHH
Confidence 43222 221122233333222111110 0123344443 2455655543322 3567778999
Q ss_pred HHHHHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccCCCCCCCCCCccccHHHHHhhcCCCccchH
Q 000134 1912 ARVAYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEGTF 1991 (2096)
Q Consensus 1912 ~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~~pE~VPFRLT~nmv~~mG~~G~eG~F 1991 (2096)
-+..|..+.+.-.-.+|+++.+++|--+ |+.-.++=+ | ++.++.||++|+..-++++++.++.+.+
T Consensus 2316 ~~Li~r~~~dhPyhtly~L~~L~~~~rd-------~e~~n~sr~-----s--l~~~rki~a~l~~~~v~~~~~~~v~~v~ 2381 (2806)
T KOG0892|consen 2316 TSLIYRVGRDHPYHTLYQLLSLVNAVRD-------NEDENRSRG-----S--IDRDRKIAAELDLCDVNQGAGNMVRQLE 2381 (2806)
T ss_pred HHHHHHHhccCchHHHHHHHHHHhcCcC-------hhhhhhccc-----c--cchhHHHHHHHhhhHhhccchhHHHHHH
Confidence 9999999999999999999988877655 121111111 2 6779999999999999999999999999
Q ss_pred HHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccc
Q 000134 1992 LRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKS 2027 (2096)
Q Consensus 1992 ~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~ 2027 (2096)
+.|++-+.-+- -......++.+..-.++...|.+.
T Consensus 2382 ~lc~~yI~lAn-l~~~q~~t~~k~v~~p~~~~~~K~ 2416 (2806)
T KOG0892|consen 2382 CLCEAYISLAN-LKTSQNDTTSKLVRLPGYQWFLKQ 2416 (2806)
T ss_pred HHHHHHHHHhc-CcccccchhhhhhcCccccHHHhh
Confidence 99998887776 556677778887788888888764
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.07 E-value=5.8 Score=55.20 Aligned_cols=241 Identities=20% Similarity=0.206 Sum_probs=155.9
Q ss_pred cccchhhhhhhhhhchhhhhh---h---cCc-cchHHHHHHHhhhchh-hhhhhhhhccchhhhhhhcc-Cccccccccc
Q 000134 13 LRDEFDEVRAEAVISLPVIVM---W---SGL-GVLTNVFKRLESLGKD-ECEKVKRVFPISFGFLSCLS-GTCSSIVDWD 83 (2096)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~---~---~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 83 (2096)
++|....||++|+..+--++- = ++- =+-.+.|+.|-++..| ...-|+=.+|..++.|+=+- +
T Consensus 471 ~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r--------- 541 (1431)
T KOG1240|consen 471 LMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR--------- 541 (1431)
T ss_pred hcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHH---------
Confidence 578889999999887643321 1 111 1235789999999999 88889999999999887432 1
Q ss_pred ccccccccccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHH---HHHhhcccC
Q 000134 84 KNACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNI---YFEFLYDES 160 (2096)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~ 160 (2096)
|+ .+-|.-+|.--++.-.+++ . .+-.++-+--.|+-+ .+--|+.++
T Consensus 542 ------Fl------------e~~q~~~~~g~~n~~nset---------~----~~~~~~~~~~~L~~~V~~~v~sLlsd~ 590 (1431)
T KOG1240|consen 542 ------FL------------ELTQELRQAGMLNDPNSET---------A----PEQNYNTELQALHHTVEQMVSSLLSDS 590 (1431)
T ss_pred ------HH------------HHHHHHHhcccccCccccc---------c----cccccchHHHHHHHHHHHHHHHHHcCC
Confidence 11 1222333331111111100 0 011111111122222 233455666
Q ss_pred ccchhhHHHHHHHHHHccCC----chhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccch
Q 000134 161 SEEVQLSCVRVIRRILVHGT----RDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRS 236 (2096)
Q Consensus 161 ~~~v~~~~~~~l~~il~h~~----~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (2096)
+.-|+=+.+++|.+++.+=. .|+++.- .+.|| +|+|..+|-||=-.|.. -++|-|. ++
T Consensus 591 ~~~Vkr~Lle~i~~LC~FFGk~ksND~iLsh------LiTfL-NDkDw~LR~aFfdsI~g-------vsi~VG~----rs 652 (1431)
T KOG1240|consen 591 PPIVKRALLESIIPLCVFFGKEKSNDVILSH------LITFL-NDKDWRLRGAFFDSIVG-------VSIFVGW----RS 652 (1431)
T ss_pred chHHHHHHHHHHHHHHHHhhhcccccchHHH------HHHHh-cCccHHHHHHHHhhccc-------eEEEEee----ee
Confidence 68899999999999987643 4554432 44666 99999999999777663 1233333 44
Q ss_pred hhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhh
Q 000134 237 NELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2096)
Q Consensus 237 ~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~ 312 (2096)
-.+=++=-+.+++++.+.- |.+..|.++.-+++-..++--...-.+-+-..+|.|||.-||-.+..-|..+++.-
T Consensus 653 ~seyllPLl~Q~ltD~EE~-Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 653 VSEYLLPLLQQGLTDGEEA-VIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHHHHHHHHHHhccCcchh-hHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence 4667777888999998887 99999999888877665555555555566778899999999999999998886554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.80 E-value=28 Score=42.59 Aligned_cols=117 Identities=10% Similarity=0.115 Sum_probs=80.9
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHH-HhccC-----Chh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLAR-LHKSL-----SLQ 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~-~~~~~-----sl~ 1118 (2096)
.+++.=++-|.|-||=..+-+...+.+ ..+.+-.|.+.|..||.|....-+.. -..++ -+.
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~-------------~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~ 294 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFP-------------HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLL 294 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCC-------------chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhh
Confidence 577777888888888777776655432 23567789999999999987665532 22222 244
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhh
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGL 1174 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl 1174 (2096)
.++..||..|+.++|+..|..++..+|.+++...-+-.-+---|+++..+.|-+-+
T Consensus 295 g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 295 GQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 68899999999999999999999999999875321111123345566555555543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=82.44 E-value=5.8 Score=37.32 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=53.7
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCCh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~W 1199 (2096)
....+...|++.+|..+++.+++..|++......+-.|+...|+++....+.+......|.... .......+....|++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAK-AYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchh-HHHHHHHHHHHHHhH
Confidence 3445566788888888888888888877666677777888888887776666554443333221 112223445556666
Q ss_pred hhHHHh
Q 000134 1200 DLMDEY 1205 (2096)
Q Consensus 1200 d~l~~~ 1205 (2096)
+.-.++
T Consensus 85 ~~a~~~ 90 (100)
T cd00189 85 EEALEA 90 (100)
T ss_pred HHHHHH
Confidence 554443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=80.91 E-value=2.1e+02 Score=38.34 Aligned_cols=58 Identities=21% Similarity=0.177 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHh
Q 000134 1351 CWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNL 1408 (2096)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i 1408 (2096)
+|.-.|+.--.-|.++.|...|-+|....+ ++.++-.||++-..|+..+|...++.+-
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar 255 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAR 255 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 335559999999999999999999988764 5789999999999999999999998764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=80.88 E-value=27 Score=49.85 Aligned_cols=212 Identities=17% Similarity=0.144 Sum_probs=125.1
Q ss_pred HHHHhhhcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccc
Q 000134 6 SEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKN 85 (2096)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (2096)
.+-|--+|+|+...||..|+..+.-+- + ....+.|..+.+|....||..-+.+||-+. ... ... .
T Consensus 623 ~~~L~~~L~D~d~~VR~~Av~~L~~~~----~---~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~---~~~----~~~-~ 687 (897)
T PRK13800 623 VAELAPYLADPDPGVRRTAVAVLTETT----P---PGFGPALVAALGDGAAAVRRAAAEGLRELV---EVL----PPA-P 687 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhhhc----c---hhHHHHHHHHHcCCCHHHHHHHHHHHHHHH---hcc----Cch-H
Confidence 344556789999999999999887652 2 234556666678888999998888887652 000 000 0
Q ss_pred ccccccccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccchh
Q 000134 86 ACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQ 165 (2096)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~ 165 (2096)
...-.++..+..--...-+.|.... .-+ . ..+.+. +...+.+|+
T Consensus 688 ~L~~~L~~~d~~VR~~A~~aL~~~~-------------------------------~~~---~-~~l~~~-L~D~d~~VR 731 (897)
T PRK13800 688 ALRDHLGSPDPVVRAAALDVLRALR-------------------------------AGD---A-ALFAAA-LGDPDHRVR 731 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhc-------------------------------cCC---H-HHHHHH-hcCCCHHHH
Confidence 0000111111000001111111110 001 1 134443 456666899
Q ss_pred hHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHH
Q 000134 166 LSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVI 245 (2096)
Q Consensus 166 ~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (2096)
.+.+..|.++- .. +.|..++.|++..||.+++.++..+= . ... .-+..+
T Consensus 732 ~~Av~aL~~~~---~~-----------~~l~~~l~D~~~~VR~~aa~aL~~~~-----------~---~~~---~~~~~L 780 (897)
T PRK13800 732 IEAVRALVSVD---DV-----------ESVAGAATDENREVRIAVAKGLATLG-----------A---GGA---PAGDAV 780 (897)
T ss_pred HHHHHHHhccc---Cc-----------HHHHHHhcCCCHHHHHHHHHHHHHhc-----------c---ccc---hhHHHH
Confidence 99999998751 11 12344679999999999999888732 1 011 012334
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHH
Q 000134 246 KLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKS 308 (2096)
Q Consensus 246 ~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l 308 (2096)
.+ +..-+|+.|..+.+.++|.++... ++ .-.|+..|..+++.||..|..-+-.+
T Consensus 781 ~~-ll~D~d~~VR~aA~~aLg~~g~~~----~~----~~~l~~aL~d~d~~VR~~Aa~aL~~l 834 (897)
T PRK13800 781 RA-LTGDPDPLVRAAALAALAELGCPP----DD----VAAATAALRASAWQVRQGAARALAGA 834 (897)
T ss_pred HH-HhcCCCHHHHHHHHHHHHhcCCcc----hh----HHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 44 334467999999999999984321 11 13478888999999999998888655
|
|
| >KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.41 E-value=2.4e+02 Score=38.66 Aligned_cols=143 Identities=13% Similarity=0.204 Sum_probs=82.4
Q ss_pred hhhHHHHHHHHhcCCCcchhhhHHHHH--HHHHhccCCCc-----chhhHHHHHHHHhhhccccCCCCchhhHHHHHHHH
Q 000134 538 VPKILVLLMHAINKESLQCEGLSVLHF--FIEQLSRVSPS-----STKHVISQVFAALIPFLERDKDNPSVLLNKVVKIL 610 (2096)
Q Consensus 538 ~pqI~a~L~~aL~~~~L~~~~l~~W~~--fv~~L~~~~~~-----~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il 610 (2096)
.+.+..+|..+|..++ +-.+=-||.. |+....+-.++ ...|...-|+..|+.--++-+-..+-.|.-+++-|
T Consensus 447 l~~~l~~l~~gL~DeP-rva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeAL 525 (859)
T KOG1241|consen 447 LQSKLSALLEGLNDEP-RVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEAL 525 (859)
T ss_pred hhHHHHHHHHHhhhCc-hHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHH
Confidence 3556666777775444 3333357776 66554322121 23477888888998877765433344677889999
Q ss_pred HHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHH-----------HHHHHHhhccCCChhHHHHHHHHH
Q 000134 611 EDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKD-----------QLLAAVDGLNHENLNVRYMVVCEL 679 (2096)
Q Consensus 611 ~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~-----------~l~~~~~~l~~en~~Vr~~aL~eL 679 (2096)
-.||.-..+..+.....+. .-.++++++.++...-...-++ -|...++..+++-..+..+-+.-+
T Consensus 526 mElIk~st~~vy~~v~~~~----l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lf 601 (859)
T KOG1241|consen 526 MELIKNSTDDVYPMVQKLT----LVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLF 601 (859)
T ss_pred HHHHHcCcHHHHHHHHHHH----HHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHH
Confidence 9988776665554432221 1134566666662222222122 245566777776666666666666
Q ss_pred HHHHhh
Q 000134 680 SKLLKL 685 (2096)
Q Consensus 680 ~~~L~~ 685 (2096)
-+.++.
T Consensus 602 lri~~s 607 (859)
T KOG1241|consen 602 LRIFES 607 (859)
T ss_pred HHHHcC
Confidence 666665
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.22 E-value=2.5e+02 Score=38.65 Aligned_cols=134 Identities=20% Similarity=0.269 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
-+.|+.-|.+--+.|+-+.|..+|.+|....+ +......+.++-.+|+..+|.+.+-.++.-.
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld--------------- 714 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD--------------- 714 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC---------------
Confidence 46799999999999999999999999987753 4566677788888899999998877665421
Q ss_pred cCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHh
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARK 1506 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~ 1506 (2096)
|+..++ ..-.|++++.. |+..-.+.....+.|.+++|..-++||++|.-+.+.
T Consensus 715 ----P~hv~s----------~~Ala~~lle~-------G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~------ 767 (799)
T KOG4162|consen 715 ----PDHVPS----------MTALAELLLEL-------GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKL------ 767 (799)
T ss_pred ----CCCcHH----------HHHHHHHHHHh-------CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc------
Confidence 221110 11234444444 444444555567899999999999999999865432
Q ss_pred hhhhcccCCcchhhhhchHHHHHHHHHHhhccCC
Q 000134 1507 RQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGH 1540 (2096)
Q Consensus 1507 ~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~ 1540 (2096)
| -...|.+||.-|+....
T Consensus 768 --------G--------d~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 768 --------G--------DSKQAAECFQAALQLEE 785 (799)
T ss_pred --------c--------chHHHHHHHHHHHhhcc
Confidence 1 12368999998887654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 2096 | ||||
| 3l54_A | 966 | Structure Of Pi3k Gamma With Inhibitor Length = 966 | 6e-07 | ||
| 4anv_A | 980 | Complexes Of Pi3kgamma With Isoform Selective Inhib | 6e-07 | ||
| 4anu_A | 980 | Complexes Of Pi3kgamma With Isoform Selective Inhib | 8e-07 | ||
| 3apc_A | 966 | Crystal Structure Of Human Pi3k-Gamma In Complex Wi | 8e-07 | ||
| 1he8_A | 965 | Ras G12v-Pi 3-Kinase Gamma Complex Length = 965 | 8e-07 | ||
| 3dbs_A | 960 | Structure Of Pi3k Gamma In Complex With Gdc0941 Len | 8e-07 | ||
| 3cst_A | 966 | Crystal Structure Of Pi3k P110gamma Catalytical Dom | 8e-07 | ||
| 4dk5_A | 959 | Crystal Structure Of Human Pi3k-Gamma In Complex Wi | 8e-07 | ||
| 1e8y_A | 966 | Structure Determinants Of Phosphoinositide 3-Kinase | 8e-07 | ||
| 3qaq_A | 960 | Crystal Structure Of Pi3k-Gamma In Complex With Tri | 8e-07 | ||
| 3nzs_A | 954 | Structure-Based Optimization Of Pyrazolo -Pyrimidin | 8e-07 | ||
| 3ene_A | 959 | Complex Of Pi3k Gamma With An Inhibitor Length = 95 | 8e-07 | ||
| 1e8x_A | 961 | Structural Insights Into Phoshoinositide 3-Kinase E | 2e-06 | ||
| 1e7u_A | 961 | Structure Determinants Of Phosphoinositide 3-Kinase | 2e-06 | ||
| 4anx_A | 980 | Complexes Of Pi3kgamma With Isoform Selective Inhib | 2e-06 | ||
| 3ihy_A | 600 | Human Pik3c3 Crystal Structure Length = 600 | 6e-06 | ||
| 3ls8_A | 614 | Crystal Structure Of Human Pik3c3 In Complex With 3 | 7e-06 | ||
| 2y3a_A | 1092 | Crystal Structure Of P110beta In Complex With Icsh2 | 8e-06 |
| >pdb|3L54|A Chain A, Structure Of Pi3k Gamma With Inhibitor Length = 966 | Back alignment and structure |
|
| >pdb|4ANV|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors Length = 980 | Back alignment and structure |
|
| >pdb|4ANU|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors. Length = 980 | Back alignment and structure |
|
| >pdb|3APC|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With Ch5132799 Length = 966 | Back alignment and structure |
|
| >pdb|1HE8|A Chain A, Ras G12v-Pi 3-Kinase Gamma Complex Length = 965 | Back alignment and structure |
|
| >pdb|3DBS|A Chain A, Structure Of Pi3k Gamma In Complex With Gdc0941 Length = 960 | Back alignment and structure |
|
| >pdb|3CST|A Chain A, Crystal Structure Of Pi3k P110gamma Catalytical Domain In Complex With Organoruthenium Inhibitor E5e2 Length = 966 | Back alignment and structure |
|
| >pdb|4DK5|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With A Pyridyl- Triazine Inhibitor Length = 959 | Back alignment and structure |
|
| >pdb|1E8Y|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin And Staurosporine Length = 966 | Back alignment and structure |
|
| >pdb|3QAQ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With Triazine-Benzimidazole 1 Length = 960 | Back alignment and structure |
|
| >pdb|3NZS|A Chain A, Structure-Based Optimization Of Pyrazolo -Pyrimidine And -Pyridine Inhibitors Of Pi3-Kinase Length = 954 | Back alignment and structure |
|
| >pdb|3ENE|A Chain A, Complex Of Pi3k Gamma With An Inhibitor Length = 959 | Back alignment and structure |
|
| >pdb|1E8X|A Chain A, Structural Insights Into Phoshoinositide 3-Kinase Enzymatic Mechanism And Signalling Length = 961 | Back alignment and structure |
|
| >pdb|4ANX|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors Length = 980 | Back alignment and structure |
|
| >pdb|3IHY|A Chain A, Human Pik3c3 Crystal Structure Length = 600 | Back alignment and structure |
|
| >pdb|3LS8|A Chain A, Crystal Structure Of Human Pik3c3 In Complex With 3-[4-(4- Morpholinyl)thieno[3,2-D]pyrimidin-2-Yl]-Phenol Length = 614 | Back alignment and structure |
|
| >pdb|2Y3A|A Chain A, Crystal Structure Of P110beta In Complex With Icsh2 Of P85beta And The Drug Gdc-0941 Length = 1092 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A Length = 614 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-27
Identities = 50/278 (17%), Positives = 103/278 (37%), Gaps = 49/278 (17%)
Query: 1746 DLPTISGIADEAEILSSLQRPKKIVLLGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRL 1805
+ I + A + S P ++ DG K P + K DDLR+D +++ +++++L
Sbjct: 333 QVKIRGIIPETATLFKSALMPAQLFFKTEDGGKYPVIFKHGDDLRQDQLILQIISLMDKL 392
Query: 1806 LSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQ 1865
L K L + + V+ + G ++++ + +L F +
Sbjct: 393 LRKE----NLDLKLTPYKVLATSTKHGFMQFIQSVP-VAEVLDTEGSIQNFFRK------ 441
Query: 1866 IKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSM 1925
+ + Y + A + +
Sbjct: 442 --------------------------------YAPSENGPNGISAEVMDTYVKSCAGYCV 469
Query: 1926 VGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGIT 1985
+ +I+G+GDRH +N+L TG H+DF + + KP P +L + M++G+G T
Sbjct: 470 ITYILGVGDRHLDNLLLTK-TGKLFHIDFGYILGRD---PKPLPPPMKLNKEMVEGMGGT 525
Query: 1986 GYEG--TFLRVCEITLSVLRTHRETLMSVLETFIHDPL 2021
E F + C LR + ++++ + +
Sbjct: 526 QSEQYQEFRKQCYTAFLHLRRYSNLILNLFSLMVDANI 563
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* Length = 940 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 4e-26
Identities = 69/448 (15%), Positives = 139/448 (31%), Gaps = 72/448 (16%)
Query: 1586 CLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLR--QYPQQGLWIMAAVSKST 1643
L+ L + L QLV + +++ L K ++ L + W + +
Sbjct: 495 SLRKLTDDELFQYLLQLVQVLKYESYLDCELTKFLLGRALANRKIGHFLFWHLRSEMHVP 554
Query: 1644 IPSRREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEF 1703
+ R + + L Q + L L S +T
Sbjct: 555 SVALRFG----LIMEAYCRGSTHHMKVLMKQGE-ALSKLKALNDFVKVSSQKTTKP---- 605
Query: 1704 SALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSL 1763
+ + + M + + PS+ + ++ + S
Sbjct: 606 ---QTKEMMHMCMRQETYMEA---LSHLQSPLDPSTLLEEV--------CVEQCTFMDSK 651
Query: 1764 QRPKKIVL---LGSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIR 1820
+P I+ + K DDLR+D ++ +++ L + L +
Sbjct: 652 MKPLWIMYSSEEAGSAGNVGIIFKNGDDLRQDMLTLQMIQLMDVLW----KQEGLDLRMT 707
Query: 1821 TFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPED 1880
+ +P + G++E V H+ + NI + K + + + K P +
Sbjct: 708 PYGCLPTGDRTGLIEVVLHSDTIANIQLNKSNMAATAAFNK-----DALLNWLKSKNPGE 762
Query: 1881 EMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENI 1940
+ RA + + A + + +++G+GDRH +NI
Sbjct: 763 ALD---------------------------RAIEEFTLSCAGYCVATYVLGIGDRHSDNI 795
Query: 1941 LFDSTTGDCVHVDFSCLF--DKGLLLEKPELVPFRLTQNMIDGLGITGYEGT-----FLR 1993
+ +G H+DF K E VPF LT + + + + F
Sbjct: 796 MIRE-SGQLFHIDFGHFLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNNSEKFERFRG 854
Query: 1994 VCEITLSVLRTHRETLMSVLETFIHDPL 2021
CE ++LR H + + L
Sbjct: 855 YCERAYTILRRHGLLFLHLFALMRAAGL 882
|
| >2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus} Length = 1092 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 6e-25
Identities = 71/445 (15%), Positives = 142/445 (31%), Gaps = 67/445 (15%)
Query: 1586 CLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLRQYPQQGLWIMAAVSKSTIP 1645
CL+ + + L QLV + ++ L + ++ L S+ P
Sbjct: 648 CLRQMSDEELSQYLLQLVQVLKYEPFLDCALSRFLLERALDNRRIGQFLFWHLRSEVHTP 707
Query: 1646 SRREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSA 1705
+ I++A +GS + ++ L KL K + +S
Sbjct: 708 AVSVQFGVILEAYCRGS------VGHMKVLSKQVEALNKLKTLNSLIKLNAVKLSRAKGK 761
Query: 1706 LKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEILSSLQR 1765
L + + P +P + ++ + + S +
Sbjct: 762 EAMHTCLKQSAYREALSDLQSP-------LNPCVILSEL--------YVEKCKYMDSKMK 806
Query: 1766 PKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFA 1823
P +V + K DDLR+D ++ +++ L + L + +
Sbjct: 807 PLWLVYSSRAFGEDSVGVIFKNGDDLRQDMLTLQMLRLMDLLW----KEAGLDLRMLPYG 862
Query: 1824 VIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEML 1883
+ + G++E V + + +I + K + + + D+
Sbjct: 863 CLATGDRSGLIEVVSTSETIADIQLNSSNVAATAAFNK-----DALLNWLKEYNSGDD-- 915
Query: 1884 KTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLGDRHGENILFD 1943
RA + + A + + +++G+GDRH +NI+
Sbjct: 916 -------------------------LDRAIEEFTLSCAGYCVASYVLGIGDRHSDNIMVK 950
Query: 1944 STTGDCVHVDFSCLF--DKGLLLEKPELVPFRLTQNMIDGLGITGYEGT-----FLRVCE 1996
TG H+DF + K K E VPF LT + I + T F + CE
Sbjct: 951 K-TGQLFHIDFGHILGNFKSKFGIKRERVPFILTYDFIHVIQQGKTGNTEKFGRFRQCCE 1009
Query: 1997 ITLSVLRTHRETLMSVLETFIHDPL 2021
+LR H +++ + L
Sbjct: 1010 DAYLILRRHGNLFITLFALMLTAGL 1034
|
| >2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A* Length = 696 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 8e-25
Identities = 47/331 (14%), Positives = 102/331 (30%), Gaps = 58/331 (17%)
Query: 1694 SRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGI 1753
+ + K ++ + P I +
Sbjct: 362 VKLVAKEPGNRNKKTEKFQKLLAEQDMFKVNFTNFEPIPFPLDPEIYITKI--------V 413
Query: 1754 ADEAEILSSLQRPKKIVLLGSDGIKR-PFLCKPKDDLRKDSRMMEFTAMINRLLSKYPES 1812
+ S P K+ + S + K DDLR+D +++ ++++LL +
Sbjct: 414 PMRTSLFKSALMPAKLTFVTSIAHHEYAAIFKHGDDLRQDQLILQMITLMDKLLRRE--- 470
Query: 1813 RRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQ 1872
L + + V+ + G +++V + R +
Sbjct: 471 -NLDLKLTPYKVLATSSKHGFLQYVDSC--------------------TVAEVLAREGNI 509
Query: 1873 FQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGL 1932
F K Y + A + ++ +++G+
Sbjct: 510 HN-------------------FFRKHHPCDNGPYGISAEVMDTYIKSCAGYCVITYLLGV 550
Query: 1933 GDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEG--T 1990
GDRH +N+L + G H+DF + + KP P +L++ M++ +G E
Sbjct: 551 GDRHLDNLLLTT-NGKLFHIDFGYILGRD---PKPMPPPMKLSKEMVEAMGGISSEHHHE 606
Query: 1991 FLRVCEITLSVLRTHRETLMSVLETFIHDPL 2021
F + C LR H ++++ + +
Sbjct: 607 FRKQCYTAYLHLRRHANVMLNLFSLMVDATV 637
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A Length = 1091 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 2e-23
Identities = 67/457 (14%), Positives = 139/457 (30%), Gaps = 80/457 (17%)
Query: 1583 MRGCLKDLPAYQWLTVLPQLVSRICHQNEEIVRLVKHIITSVLR--QYPQQGLW-IMAAV 1639
+R K L + L QLV + ++ LV+ ++ L + W + + +
Sbjct: 639 VRCLEKYLTDDKLSQYLIQLVQVLKYEQYLDNLLVRFLLKKALTNQRIGHFFFWHLKSEM 698
Query: 1640 SKSTIPSRREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINI 1699
T+ R E + ++ + KL K +
Sbjct: 699 HNKTVSQRFGLLLESYC---------RACGMYLKHLNRQVEAMEKLINLTDILKQEKKDE 749
Query: 1700 STEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIADEAEI 1759
+ + + + + P + +E I
Sbjct: 750 TQKVQMKFLVEQMRRPDFMDALQGFLSP---------------LNPAHQLGNLRLEECRI 794
Query: 1760 LSSLQRPKKIVLLGSD------GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESR 1813
+SS +RP + D + K DDLR+D ++ ++ + +++
Sbjct: 795 MSSAKRPLWLNWENPDIMSELLFQNNEIIFKNGDDLRQDMLTLQIIRIMENIW----QNQ 850
Query: 1814 RRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQF 1873
L + + + + + G++E V ++ + I + T ++
Sbjct: 851 GLDLRMLPYGCLSIGDCVGLIEVVRNSHTIMQIQCKGGLKGALQFNSHT------LHQWL 904
Query: 1874 QGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTAVWSMVGHIVGLG 1933
+ K + + A + + A + + I+G+G
Sbjct: 905 KDKNKGEI---------------------------YDAAIDLFTRSCAGYCVATFILGIG 937
Query: 1934 DRHGENILFDSTTGDCVHVDFSCLF--DKGLLLEKPELVPFRLTQNMIDGLGITGYEGT- 1990
DRH NI+ G H+DF K K E VPF LTQ+ + + E T
Sbjct: 938 DRHNSNIMVKD-DGQLFHIDFGHFLDHKKKKFGYKRERVPFVLTQDFLIVISKGAQECTK 996
Query: 1991 ------FLRVCEITLSVLRTHRETLMSVLETFIHDPL 2021
F +C +R H +++ + +
Sbjct: 997 TREFERFQEMCYKAYLAIRQHANLFINLFSMMLGSGM 1033
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.2 bits (176), Expect = 2e-12
Identities = 89/598 (14%), Positives = 178/598 (29%), Gaps = 169/598 (28%)
Query: 193 KCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAA 252
+ + L + + + + C + + ++LS +D S+ L
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPK-SILSKEEIDHIIMSKDAVSGTL---------- 65
Query: 253 DDPLILETLLESTAEL--MMAVDVHSQHFLFLL--------------ILLVEQLD----N 292
+ TLL E+ +V ++ FL+ + +EQ D +
Sbjct: 66 ---RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 293 PHVTVRMNASRL-----IRKSCFFHLK----------GGCELLVSKAVLICNELFDYLSV 337
V + N SRL +R+ L+ G K + + Y
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQ-ALLELRPAKNVLIDGVLGS----GKTWVALDVCLSYKVQ 177
Query: 338 RLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVS-QQDNDQAVNI---INELAKC 393
I + E V +M+ +L ++ + +D + NI I+ +
Sbjct: 178 CKMDFKIFWLNLKN----CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 394 LNTDMVP------LIV---TWIPKVL-AFALHQADERRLLSALEFYCIQTGSDNQEIFAA 443
L + L+V K AF L C +
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS--------------C-KI---------- 268
Query: 444 ALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSI 503
L+ +D ++ +T ++ + + LL
Sbjct: 269 --------LLTTRFKQVTDFLSA----------ATTTHISLDHHSMTLTPDEVKSLL--- 307
Query: 504 DRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLS-VL 562
K L L ++ L + +I + L N + + C+ L+ ++
Sbjct: 308 -LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG-------LATWDNWKHVNCDKLTTII 359
Query: 563 HFFIEQLSRVSPSSTKHVISQ--VF--AALIP-------FLERDKDNPSVLLNKVVKILE 611
+ L P+ + + + VF +A IP + + K + V++NK+ K
Sbjct: 360 ESSLNVL---EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS- 415
Query: 612 DLVLKNRAILKQHIHE--FPLLPSIAALTEVNKAIQEA-RGPMTLK--DQLLAAVDG--L 664
LV K I L + ++++I + P T D + +D
Sbjct: 416 -LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 665 NHENLNVRY-MVVCELSKL-------------LKLKSEDVTALINGEACSDLDVLSTL 708
+H + + + E + L+ K + N S L+ L L
Sbjct: 475 SH----IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG-SILNTLQQL 527
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.8 bits (175), Expect = 2e-12
Identities = 101/672 (15%), Positives = 209/672 (31%), Gaps = 223/672 (33%)
Query: 76 CSSIVDWDKNA-----CKLLLNVEDDILSQTVDYLLENFW--CSKCDTNVVHNQELSSKI 128
C + D K+ ++ +D + S T L FW SK +E+ K
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAV-SGT--LRL--FWTLLSK-------QEEMVQKF 82
Query: 129 VNPSDVQSKDLNF--------HSDFSFLLNIYFEF---LYDESSEEVQLSCVRV-----I 172
V +V + F S + +Y E LY+++ + + R+ +
Sbjct: 83 VE--EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 173 RR----------ILVHG-------------TRDVLLKTRSE----WIK-----CIEFLLL 200
R+ +L+ G ++ + + W+ E +L
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 201 NKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILET 260
+K QI D N +SRS+ +++ L + +
Sbjct: 201 MLQK-----LLYQI--------------DPNWTSRSD------------HSSNIKLRIHS 229
Query: 261 LLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELL 320
+ L+ + LL+ L N V+ ++ F+L C++L
Sbjct: 230 IQAELRRLLK----SKPYENCLLV-----LLN----VQ--NAKAWNA---FNL--SCKIL 269
Query: 321 V---SKAVLICNELFDYLSVRLASRPIMVRE---FAEAAFGVETEELVKK---MIPAVLP 371
+ K V D+LS + + E + L+ K P LP
Sbjct: 270 LTTRFKQV------TDFLSAATTTHISLDHHSMTLTPD----EVKSLLLKYLDCRPQDLP 319
Query: 372 KLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLLSALE-FYC 430
+ V+ N + ++II E + D + W + +L + +E
Sbjct: 320 REVL--TTNPRRLSIIAESIR----DGLATWDNW---------KHVNCDKLTTIIESSLN 364
Query: 431 IQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGN--EDL 488
+ ++ +++F D L F + +P + +++ + +
Sbjct: 365 VLEPAEYRKMF--------DRLSVFPP--SAH--------IP---TILLSLIWFDVIKSD 403
Query: 489 PGFLRNHFV--GLLNSIDRKM----LHAEDLSLQKQALKRIEI---LIE----------- 528
+ N L+ K + + L L+ + + +++
Sbjct: 404 VMVVVNKLHKYSLVEK-QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 529 -MIGSHLTTYVPKILVLLMHAINKESLQ-CEGLSVLHF---FIEQ------LSRVSPSST 577
+I +L Y + H N E + ++ F+EQ + + S
Sbjct: 463 DLIPPYLDQYFYSHIG--HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 578 KHVISQV--FAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIA 635
+ + Q+ + I D D ++V + D + K L ++ L IA
Sbjct: 521 LNTLQQLKFYKPYI----CDNDP---KYERLVNAILDFLPKIEENL--ICSKYTDLLRIA 571
Query: 636 ALTEVNKAIQEA 647
+ E +EA
Sbjct: 572 LMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.6 bits (164), Expect = 4e-11
Identities = 106/635 (16%), Positives = 192/635 (30%), Gaps = 172/635 (27%)
Query: 1225 FDM-DVAKILQAMMKKDHFSVSDKIGVSKQV------LIAPLAAAGMDSYTRA------- 1270
FD DV + ++++ K+ D I +SK L L + + +
Sbjct: 33 FDCKDVQDMPKSILSKEEI---DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 1271 -YPFIV-KLH--------LLQELEDFHAILVNDS-FLEKSFLPSDLKFSKLMANWENRLK 1319
Y F++ + + + + L ND+ K + + KL L
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL----RQALL 145
Query: 1320 YTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASG 1379
+P+ ++ G G G K +A + ++ +
Sbjct: 146 ELRPAKNV---------LIDGVLGSG-----------KTW-VAL--DVCLSYKVQCKMDF 182
Query: 1380 APNVHMEKAKLLW---STRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLP 1436
+ W S + E+ Q LL + + S S + L
Sbjct: 183 --KIF-------WLNLKNCNSPETVLEMLQKLLYQ----IDPNWTSRSDHSSNIKLRIHS 229
Query: 1437 VLSNTQTLNEKRDIAKTLL-LYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYF-YMA 1494
+ + + L + + LL L +V +
Sbjct: 230 IQAELRRLLKSKPYENCLLVL-------------LNV-------------QNAKAWNAFN 263
Query: 1495 KYCDDVLVDARKRQ-------EENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNL-FQA 1546
C +L+ R +Q + I +V K L ++L +
Sbjct: 264 LSCK-ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 1547 L---PRLLTLWFDFGSICQRAGSSSNKDLKNVNG-KVMSIMRGCLKDL-PA-----YQWL 1596
L PR L++ R G ++ + K+VN K+ +I+ L L PA + L
Sbjct: 323 LTTNPRRLSI---IAESI-RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 1597 TVLP-------QLVSRI-CHQNEEIVRLV--KHIITSVLRQYPQQGLW-IMAAVSKSTIP 1645
+V P L+S I + V +V K S++ + P++ I + + +
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 1646 SRREAA--AEII---QAAKKGSAHGNSANNLFGQFTSLI-DHLI---------------- 1683
E A I+ K + L F S I HL
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 1684 -------KLCFHAGQSKSRTINISTEFSALKRMMPLGIIM--PIQQSLTVT----LPPQD 1730
K+ H + + + +I LK P I P + L LP +
Sbjct: 499 DFRFLEQKIR-HDSTAWNASGSILNTLQQLKFYKPY-ICDNDPKYERLVNAILDFLPKIE 556
Query: 1731 ANLTESPSSDIFSASDLPTISGIADEAEILSSLQR 1765
NL S +D+ + + I +EA +QR
Sbjct: 557 ENLICSKYTDLLRIALMAEDEAIFEEAH--KQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 4e-10
Identities = 104/651 (15%), Positives = 198/651 (30%), Gaps = 180/651 (27%)
Query: 806 LD-ENVPASILQVLKDKEHLTVVASGTMGSDNIHEMNMRGRKFW----------DRFSIY 854
D ++V +L +E ++ S ++ R FW +F
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSK-------DAVSGTLRLFWTLLSKQEEMVQKF--- 82
Query: 855 VKEIIAP---CLTSRFQLPSGSDSVSTGPIYLPSMSFRRWIYYWIRKLTVHATGSRASIF 911
V+E++ L S + PSM R +I R ++ + +
Sbjct: 83 VEEVLRINYKFLMSPIKTEQRQ----------PSMMTRMYIEQRDR---LYNDNQVFAKY 129
Query: 912 NACRGIVRHDMQTAIYLL---PYLVLNAVCHGTEEARLGIAQEILSVLDAAASD----HS 964
N R ++ A+ L +++ G LG + + LD S
Sbjct: 130 NVSRLQPYLKLRQALLELRPAKNVLI----DGV----LGSGKTWV-ALDVCLSYKVQCKM 180
Query: 965 GASVHGISGQSEVCIQAIFTLLDNLGQWVDDVKQELALSESLTSKQQGSKSKHPASSMHQ 1024
+ ++ ++ + + +L L +D + S+ ++ + S
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQID--PNWTSRSDHSSNIKLRIHSIQAELRR-- 236
Query: 1025 DQLLTQCQYVSGLLSAI------PKVTLARA-SFRCQAYA----RSLMYFESHVREKSGS 1073
LL Y + LL + K A + C+ + + F S S
Sbjct: 237 --LLKSKPYENCLL--VLLNVQNAKA--WNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 1074 FNPAAEKSGTF-EDEDVSFLMEIYSFLD-EPDGLSGLAR----LHKSL---SLQDELLSN 1124
+ S T DE S L+ +LD P L S+ S++D L +
Sbjct: 291 LD---HHSMTLTPDEVKSLLL---KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKT 1184
NW V +C++ + +S+ +VL + + IP
Sbjct: 345 D---NWKHV--NCDKLTTIIESSL----NVLEPAEYRKMFDRLSVFPPS--AHIPT--IL 391
Query: 1185 WCMQGVQAAWRLGRWDLMDEYLSGADEE---------GLLCSSSESNASFDMDVAKILQA 1235
+ + W + + D L+ + + + L+
Sbjct: 392 LSL--------I--WFDVIKS----DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 1236 MMKKD---HFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLL-----QELEDFH 1287
++ + H S+ D + K L +D Y Y I HL + + F
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF--YSHIGH-HLKNIEHPERMTLFR 494
Query: 1288 AILVNDSFLEK-------------SFLP--SDLKFSKLMANWENRLKYTQPSLWAREPLL 1332
+ ++ FLE+ S L LKF K Y + +P
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK---------PYICDN----DP-- 539
Query: 1333 AFRRMV-----FGASGLGAEVGNCWLQYAKLCRLA------GHYETATRAI 1372
+ R+V F + + +Y L R+A +E A + +
Sbjct: 540 KYERLVNAILDF-LPKIEENLICS--KYTDLLRIALMAEDEAIFEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 7e-09
Identities = 124/759 (16%), Positives = 231/759 (30%), Gaps = 235/759 (30%)
Query: 549 INKESLQCEGLSVLHF---FIEQLS-RVSPSSTKHVISQVFAALIPFLERDKDNPSVLLN 604
+ Q + + + F F++ + K ++S+ I + KD ++
Sbjct: 11 TGEHQYQYKDI-LSVFEDAFVDNFDCKDVQDMPKSILSK---EEIDHIIMSKDA----VS 62
Query: 605 KVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQ-EARGPMTLKDQLLAAVDG 663
+++ L+ K ++++ + E L + L I+ E R P + + D
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEV-LRINYKFLMS---PIKTEQRQPSMMTRMYIEQRDR 118
Query: 664 LNHEN-----LNV-RYMVVCEL-SKLLKLKSED-VTALINGEACSDLDVLSTLISSLLRG 715
L ++N NV R +L LL+L+ V I+G + G
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL--IDG----------------VLG 160
Query: 716 CAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLAR 775
G K A V C +K++C D IF L +L
Sbjct: 161 S--------G---KTWVA-----------LDV----CLSYKVQCKMDFKIFWL---NLKN 191
Query: 776 AFRAAPDTIIQDSAALAIQELLKIAGCEASLDENVPASILQV-------LKDKEH---LT 825
P+T+++ L Q + + N+ I + LK K + L
Sbjct: 192 CNS--PETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 826 VVASGTMGSDNIHEMNMRGRKFWDRFSIYVKEIIAPCLTSRFQLPSGSDSVSTGPIYLPS 885
V+ N+ + K W+ F++ K ++ T+RF+ +D +S S
Sbjct: 249 VL-------LNV-----QNAKAWNAFNLSCKILL----TTRFK--QVTDFLSAATTTHIS 290
Query: 886 MSFRRWIYYWIRKLTVHATGSRASIFNACRGIVRHDMQTAIYLLPYLVLNAVCHGTEEAR 945
+ LT S+ D LP E
Sbjct: 291 LDHHSM------TLTPDEV---KSLLLKYLDCRPQD-------LP-----------REV- 322
Query: 946 LGIAQEILSVLDAAASDHSGASVHGISGQSEVCIQAIFTLLDNLGQWVDDVKQELALSES 1005
L LS++ S+ D L W D+ K +
Sbjct: 323 LTTNPRRLSII--------AESIR-----------------DGLATW-DNWKH--VNCDK 354
Query: 1006 LTSKQQGSKSKHPASSMHQDQLLTQCQYVSGLLS------AIPKVTLARASFRCQAYARS 1059
LT+ + S + + + + LS IP + L+
Sbjct: 355 LTTIIESSLN-------VLEPAEYRKMFDR--LSVFPPSAHIPTILLSL--IWFDVIKSD 403
Query: 1060 LMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSL---- 1115
+M + + + S EK E + IY L+ L LH+S+
Sbjct: 404 VMVVVNKLHKYS-----LVEKQP---KESTISIPSIY--LELKVKLENEYALHRSIVDHY 453
Query: 1116 SLQDELLSNKKSGNWAE--VF-------TSCEQALQMEPTSVQRHSDVLNCLLNMCHLQA 1166
++ S+ + + + + E +R + L+ L+
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP--------ERMTLFRMVFLDFRFLEQ 505
Query: 1167 MVTHVDG----------LISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLC 1216
+ H + ++ YK C + + ++D +L EE L+C
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN--AILD-FLPKI-EENLIC 561
Query: 1217 SSSESNASFDMDVAKILQ-AMMKKDHFSVSDKIGVSKQV 1254
S +L+ A+M +D + KQV
Sbjct: 562 SKY----------TDLLRIALMAEDEAIFEEA---HKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 4e-08
Identities = 98/624 (15%), Positives = 186/624 (29%), Gaps = 200/624 (32%)
Query: 1132 EVFTSCE-QALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGV 1190
+ + E + M +V + LL+ + + V+ ++ YK + M +
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSK-QEEMVQKFVEEVLR--INYK--FLMSPI 98
Query: 1191 QAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDM----DVAKILQAMMK-KDH--FS 1243
+ R + Y+ D L + ++ A +++ K+ QA+++ +
Sbjct: 99 KTEQR-QPSMMTRMYIEQRDR---LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 1244 VSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIV----------KLHLLQELEDFHAILVND 1293
+ +G K + + + F + +L+ L+ + +
Sbjct: 155 IDGVLGSGKTWVALDVCLS--YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 1294 SFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREP----LLAFRRMVFGASGLGAEVG 1349
+ +S S++K + + + L+ L +P LL V
Sbjct: 213 -WTSRSDHSSNIKLR--IHSIQAELRR----LLKSKPYENCLLVLL-----------NVQ 254
Query: 1350 NCW-LQYAKL-CR--LAGHYETATRAILEAQASGAPNVHMEK-----------AKLLWST 1394
N L C+ L ++ T + A + H K L
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-C 313
Query: 1395 RRSD-------------GAIAELQQNLLN--KPVEVVGSTAISSITSLSLVPLNP----- 1434
R D IAE ++ L + V +++I SL L P
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 1435 ----LPVLSN-----TQTL---------NEKRDIAKTLLLYS---RW-------IH--YT 1464
L V T L ++ + L YS + I Y
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 1465 GQKQKED--------VITLYSRVR-----ELQPMWEKGYFYMAKYCDDVLVDARKRQEEN 1511
K K + ++ Y+ + +L P + YFY
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY------------------- 474
Query: 1512 SEIGPSEKRWWFYVPDVLLFYAKGLHRGHK-NLFQALPRLLTLWFDF--------GSICQ 1562
S IG + K + + LF R++ L F F +
Sbjct: 475 SHIG---------------HHLKNIEHPERMTLF----RMVFLDFRFLEQKIRHDSTAWN 515
Query: 1563 RAGSSSN--KDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRICH---QNEEIVRLV 1617
+GS N + LK + C D P Y+ +LV+ I + EE +
Sbjct: 516 ASGSILNTLQQLKFYKPYI------CDND-PKYE------RLVNAILDFLPKIEENLICS 562
Query: 1618 KHIITSVLR---QYPQQGLWIMAA 1638
K+ T +LR + ++ A
Sbjct: 563 KY--TDLLRIALMAEDEAIFEEAH 584
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 1e-06
Identities = 41/314 (13%), Positives = 95/314 (30%), Gaps = 82/314 (26%)
Query: 1 MTESDS-EILDLALRDEFDEVRAEAVISLPVIVMWSGLG-VLTNVFKRLESLGKDECEKV 58
+T + +L L ++ E + + P + S + + + ++ C+K+
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL--SIIAESIRDGLATWDNWKHVNCDKL 355
Query: 59 KR----------------------VFP----ISFGFLSCLSGTCSSIVDWDKNACKLLLN 92
VFP I LS + W ++ +
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI---------W----FDVIKS 402
Query: 93 VEDDILSQTVDYLLENFWCSKCDTNVVHN------------QELSSKIVNPSDVQSKDLN 140
++++ Y L K T + + L IV+ ++ +
Sbjct: 403 DVMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 141 FHSDFSFLLNIYFEFL-Y----DESSEEVQLSCVRVIRRILVHGTRDV------LLKTRS 189
+L ++ + + E E + L R + + D + +
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTL-----FRMVFL----DFRFLEQKIRHDST 512
Query: 190 EWIKCIEFL-LLNKRKAIRDAFCTQIGYFLQDTVLSSL--FLDENASSRSNELKLLDVIK 246
W L L + K + C + + +++++ FL K D+++
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKY--ERLVNAILDFL-PKIEENLICSKYTDLLR 569
Query: 247 LAFTAADDPLILET 260
+A A D+ + E
Sbjct: 570 IALMAEDEAIFEEA 583
|
| >1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A Length = 33 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 3e-09
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 2066 LAVEGQARRLIAEAVSHKNLGKMYIWWMPW 2095
L V Q +LI +A S + L + YI W P+
Sbjct: 3 LDVPEQVDKLIQQATSIERLCQHYIGWCPF 32
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2096 | |||
| 2x6h_A | 696 | GH13170P, VPS34, phosphotidylinositol 3 kinase 59F | 100.0 | |
| 1e7u_A | 961 | Phosphatidylinositol 3-kinase catalytic subunit; p | 100.0 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 100.0 | |
| 3ls8_A | 614 | Phosphatidylinositol 3-kinase catalytic subunit ty | 100.0 | |
| 2y3a_A | 1092 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 100.0 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 100.0 | |
| 1w1n_A | 33 | Phosphatidylinositol 3-kinase TOR1; target of rapa | 99.34 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.02 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.99 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 98.97 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 98.77 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 98.74 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 98.7 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.69 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 98.68 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 98.67 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.58 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 98.53 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 98.38 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 98.37 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 98.31 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 98.29 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 98.27 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 98.22 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 98.18 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 98.04 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 98.01 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 97.88 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 97.78 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 97.73 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 97.7 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 97.69 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 97.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 97.62 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 97.62 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 97.56 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 97.53 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 97.51 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 97.44 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 97.43 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 97.35 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 97.31 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 97.25 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 97.23 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 97.21 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 97.19 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 97.19 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 97.12 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 97.08 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 97.0 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 96.99 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 96.93 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 96.88 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 96.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 96.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 96.72 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 96.65 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 96.64 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 96.58 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 96.45 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 96.43 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 96.43 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 96.42 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 96.39 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 96.34 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 96.32 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 96.32 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 96.31 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 96.28 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 96.24 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 96.23 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 96.23 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 96.15 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 96.14 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 96.13 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 96.11 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 96.05 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 96.0 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 95.96 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 95.96 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 95.9 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 95.86 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 95.83 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 95.82 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 95.81 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 95.8 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 95.67 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 95.66 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 95.65 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 95.59 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 95.58 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 95.57 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 95.52 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 95.49 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 95.47 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 95.46 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 95.45 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 95.45 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 95.37 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 95.3 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 95.28 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 95.25 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 95.19 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 95.16 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.11 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 95.09 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 95.04 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 94.94 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 94.91 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 94.89 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 94.87 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 94.79 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 94.57 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 94.4 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 94.38 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 94.35 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 94.32 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 94.3 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 94.3 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 94.29 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 94.21 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 94.2 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 94.0 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 93.95 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 93.91 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 93.85 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 93.62 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 93.6 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 93.58 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 93.56 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 93.52 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 93.48 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 93.41 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 93.28 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 93.17 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 93.15 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 93.15 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 93.13 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 93.11 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 93.09 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 93.03 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 93.03 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 93.02 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 92.88 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 92.88 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 92.86 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 92.84 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 92.84 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 92.82 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 92.82 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 92.77 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 92.77 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 92.74 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 92.48 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 92.41 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 92.41 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 92.39 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 92.27 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 92.25 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 92.16 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 92.13 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 91.98 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 91.96 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 91.96 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 91.95 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 91.88 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 91.85 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 91.81 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 91.8 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 91.8 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 91.69 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 91.58 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 91.55 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 91.53 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 91.46 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 91.31 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 91.19 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 91.08 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 91.05 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 90.95 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 90.75 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 90.66 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 90.53 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 90.47 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 90.43 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 90.28 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 90.25 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 90.0 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 89.93 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 89.89 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 89.83 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 89.79 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 89.67 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 89.46 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 89.22 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 89.13 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 88.99 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 88.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 88.32 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 88.32 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 88.28 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 87.95 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 87.76 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 87.66 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 87.55 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 87.36 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 87.13 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 87.02 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 86.9 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 86.79 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 86.51 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 86.39 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 86.21 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 86.08 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 85.94 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 85.75 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 85.63 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 85.5 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 85.03 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 85.01 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 84.97 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 84.4 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 84.08 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 83.87 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 83.51 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 83.26 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 83.25 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 82.98 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 82.83 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 82.78 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 82.73 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 82.66 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 82.64 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 82.14 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 81.78 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 81.67 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 81.55 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 81.05 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 80.85 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 80.74 |
| >2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-57 Score=584.50 Aligned_cols=461 Identities=17% Similarity=0.283 Sum_probs=340.3
Q ss_pred HHHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhhH-----hHHHHHHHHHHhhcCCCCCchhhhhhH
Q 000134 1526 PDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLK-----NVNGKVMSIMRGCLKDLPAYQWLTVLP 1600 (2096)
Q Consensus 1526 ~~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~iP~~~wl~~lP 1600 (2096)
+.|+.-|++|+...+..-......+|.-|-..+.. .++. -.+..|.+..-+.+...|....+.+||
T Consensus 76 ~~aL~kfL~sv~W~~~~e~~~a~~lL~~W~~~~~~---------dALeLL~~~f~~~~VR~yAV~~L~~~~de~L~~YLl 146 (696)
T 2x6h_A 76 KKALTKFLKCINWKLEDEVTQALWMLANWAPMDVE---------DALELLSPTFTHPQVRKYAVSRLAQAPDEDLLLYLL 146 (696)
T ss_dssp HHHHHHHGGGTTTSCHHHHHHHHHHHHHSCCCCHH---------HHHHHHSTTCCCHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hhHHHHHHhhCCCCCHHHHHHHHHHHhcCCCCCHH---------HHHHHhcccCCCHHHHHHHHHHHHhCChHHHHHHHH
Confidence 47899999999888765444455799999543321 0110 012345666666778899999999999
Q ss_pred HhhhccccCchH--------------------------------------------------------------------
Q 000134 1601 QLVSRICHQNEE-------------------------------------------------------------------- 1612 (2096)
Q Consensus 1601 QLisRl~h~~~~-------------------------------------------------------------------- 1612 (2096)
|||+.|.+.+.+
T Consensus 147 QLVQALKyE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (696)
T 2x6h_A 147 QLVQALKYEDPRHIVHLHGCIFPERDVVRSILDDNGSLLDQSSLSDLSATSSGLHASVIPANQRAASVLAAIKSDKSVSP 226 (696)
T ss_dssp HHHHHGGGSCHHHHHHHHHHHC----------------------------------------------------------
T ss_pred HHHHHHHhcchhhhcccccccccchhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999987310
Q ss_pred --------------------------------------------------HHHHHHHHHHHHHH--hchhhHHHHHHHhh
Q 000134 1613 --------------------------------------------------IVRLVKHIITSVLR--QYPQQGLWIMAAVS 1640 (2096)
Q Consensus 1613 --------------------------------------------------v~~~l~~il~kv~~--~yPqq~lw~l~~~~ 1640 (2096)
...+..-||.+... ...|+.+|+|.+.+
T Consensus 227 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~La~FLl~rA~~n~~i~h~l~W~L~~e~ 306 (696)
T 2x6h_A 227 GSAGGSGSGGQGSVALPNPSAPATPGSSSLPCDSNSNALMLAEGISFGSVPANLCTFLIQRACTNATLANYFYWYLSIEV 306 (696)
T ss_dssp ----------------------------------------------------CHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccCCHHHHHHHHHHhhChhhHHHHHHHhHhhc
Confidence 01122223333332 25789999999887
Q ss_pred cC--CC----hhHHHHHHHHHHHHHhcCCC----CCchhchHHHHHHHHHHHHHHhhccCCccccccchhHhhHHHHhhc
Q 000134 1641 KS--TI----PSRREAAAEIIQAAKKGSAH----GNSANNLFGQFTSLIDHLIKLCFHAGQSKSRTINISTEFSALKRMM 1710 (2096)
Q Consensus 1641 ~S--~~----~~R~~~~~~Il~~~~~~~~~----~~~~~~li~~~~~l~~~Li~l~~~~~~~~~~~~~l~~~f~~l~~~~ 1710 (2096)
.. .. +....+...|++.+...... .......+.....++++|.+++......+. +-......++...
T Consensus 307 ~~~~~~~~~~~~~~~~~~~il~~~l~~l~~g~~~~~~~~~~l~~Q~~~~~~L~~i~~~ik~~~~---~~~~k~e~L~~~L 383 (696)
T 2x6h_A 307 EEVESVRKQDERAHDMYAMVLKMFLKVLENGNFNLRGIFYNLRKQRRFIDELVKLVKLVAKEPG---NRNKKTEKFQKLL 383 (696)
T ss_dssp CC-----CCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS---CHHHHHHHHHHHH
T ss_pred cCccccccccchHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHhccCc---cHHHHHHHHHHHh
Confidence 65 11 23355566666655421111 011234566666788888887743211110 0011111222221
Q ss_pred cCCcccccccccccccCCCCCCCCCCCCCCCCCCCCcceEeeecC-ceEEecCCCcceEEEEEecC-CCeeeEEecCCCc
Q 000134 1711 PLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIAD-EAEILSSLQRPKKIVLLGSD-GIKRPFLCKPKDD 1788 (2096)
Q Consensus 1711 ~~~~i~P~~~~l~~~LP~~~~~~~~~~~~~~f~~~~~v~I~~f~~-~v~V~~S~q~PkrI~i~gsD-Gk~y~fL~K~~dD 1788 (2096)
...- +. ...+.. . ..-++|..+.++|.+|.+ .+.|++|+++||+|+|+|+| |+.|+||+|++||
T Consensus 384 ~~~~--~~----~~~l~~----~----~~~~lP~~p~v~I~~~~~~~~~V~~S~~~P~~l~~~gsD~G~~y~~i~K~gDD 449 (696)
T 2x6h_A 384 AEQD--MF----KVNFTN----F----EPIPFPLDPEIYITKIVPMRTSLFKSALMPAKLTFVTSIAHHEYAAIFKHGDD 449 (696)
T ss_dssp HSTT--SS----SSCTTS----C----CCEECSSCTTSEEEEECGGGCEECSSSSCCEEEEEEETTTTCEEEEEEECSSC
T ss_pred cchh--hc----cccccc----C----CCccCCCCCCeEEEEEecCeEEEcccccCCeEEEEEecCCCCceeEEEecCcc
Confidence 1000 00 000100 0 012344456789999985 69999999999999999999 9999999999999
Q ss_pred chhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcceeEecCCCccHHHHHHHHHHhcCCCccccCChHHHH
Q 000134 1789 LRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYISCGKFDRQKTNPQIKR 1868 (2096)
Q Consensus 1789 lR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~ 1868 (2096)
+|||+|+||+|++||.+|+++. |+|++++|.|||+++++||||||++ .|+++|+.++ +
T Consensus 450 LRQD~rv~Ql~~lmn~il~~~~----~~L~i~~Y~Vipls~~~GLIE~V~s-~tl~~i~~~~----~------------- 507 (696)
T 2x6h_A 450 LRQDQLILQMITLMDKLLRREN----LDLKLTPYKVLATSSKHGFLQYVDS-CTVAEVLARE----G------------- 507 (696)
T ss_dssp THHHHHHHHHHHHHHHHHHHTT----CCCCCCCCCEEESSTTCEEEECCCC-EEHHHHHHHS----S-------------
T ss_pred cchhHHHHHHHHHHHHHHHhCC----CCcEEeccEEEeccCCCCeeeeCCC-ccHHHHHHhc----C-------------
Confidence 9999999999999999999984 8999999999999999999999975 7999997531 0
Q ss_pred HHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHHH----HHHHHHHHHhhHHHHHhhhccccCCCCCceeeec
Q 000134 1869 IYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWF----RARVAYAHTTAVWSMVGHIVGLGDRHGENILFDS 1944 (2096)
Q Consensus 1869 ~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w~----~~R~~ft~S~Av~S~vgYILGLGDRH~eNILld~ 1944 (2096)
.+++||.+.||++..|| .+|++|++|+|+|||+|||||||||||+|||||
T Consensus 508 -------------------------~l~~~f~~~~p~~~~~~~~~~~ar~nF~~SlA~~Svv~YILGlGDRH~~NILid- 561 (696)
T 2x6h_A 508 -------------------------NIHNFFRKHHPCDNGPYGISAEVMDTYIKSCAGYCVITYLLGVGDRHLDNLLLT- 561 (696)
T ss_dssp -------------------------SHHHHHHHHSBCTTSSSSBCHHHHHHHHHHHHHHHHHHHHHTCCCCCTTTEEEC-
T ss_pred -------------------------hHHHHHHHHCCCccchhhhHHHHHHHHHHHHHHHHHHHHHccCCCCCCcceEEe-
Confidence 15689999999998887 799999999999999999999999999999999
Q ss_pred CCCcEEeeeccccccccCCCCCCCCCCccccHHHHHhhcCCCccc--hHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCc
Q 000134 1945 TTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEG--TFLRVCEITLSVLRTHRETLMSVLETFIHDPLV 2022 (2096)
Q Consensus 1945 ~tG~vvHIDF~~~F~kg~~l~~pE~VPFRLT~nmv~~mG~~G~eG--~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~ 2022 (2096)
.||+++|||||++|+++ +.||.|||||||||+++||+.|+|| .|+.+|+.++++||+|++.|++++++|++||+.
T Consensus 562 ~tG~v~HIDFG~~f~~~---p~pe~VPFRLT~~mv~~mG~~g~eg~~~Fr~~c~~~~~~LR~~~~~il~ll~lml~~~lp 638 (696)
T 2x6h_A 562 TNGKLFHIDFGYILGRD---PKPMPPPMKLSKEMVEAMGGISSEHHHEFRKQCYTAYLHLRRHANVMLNLFSLMVDATVP 638 (696)
T ss_dssp TTSCEEECCCCSCTTCC---SSSCCCSSCCCHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTCCCT
T ss_pred CCCCEEEEeehhhhccC---CCCcCCCeecCHHHHHHhCCCCcccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHcCCCC
Confidence 59999999999999988 4799999999999999999999998 599999999999999999999999999999999
Q ss_pred ccccccCCCCccccchhHHHHHHHHHHHhhccccccCCCCCCCCCHHHHHHHHHHHHhCcc
Q 000134 2023 EWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSHK 2083 (2096)
Q Consensus 2023 ~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g~~~~~~~~~~~~lsv~~qV~~LI~~Atd~~ 2083 (2096)
+|.... ..++..+++|+...+.. -....+|..||++|.+..
T Consensus 639 ~~~~~~------------~~~i~~l~~rf~l~lse--------eea~~~~~~lI~~S~~s~ 679 (696)
T 2x6h_A 639 DIALEP------------DKAVKKVEENLQLGLTD--------EEAVQHLQSLLDVSITAV 679 (696)
T ss_dssp TTTSSG------------GGHHHHHHHHHTTTSCH--------HHHHHHHHHHHHHHHHHH
T ss_pred ccccCH------------HHHHHHHHHHhCCCCCH--------HHHHHHHHHHHHHHHhhh
Confidence 996421 25688899999753321 134578999999998754
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-56 Score=590.29 Aligned_cols=462 Identities=18% Similarity=0.230 Sum_probs=338.3
Q ss_pred HHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhh-----HhHHHHHHHHHHhhcCCCCCchhhhhhHH
Q 000134 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDL-----KNVNGKVMSIMRGCLKDLPAYQWLTVLPQ 1601 (2096)
Q Consensus 1527 ~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~iP~~~wl~~lPQ 1601 (2096)
.++.-+++|+.+.+......+..+|.-|-..... .++ .-.+..|.+..-+.+..+|...|+.++||
T Consensus 440 ~aL~~~l~sv~w~~~~~~~~~~~ll~~W~~~~~~---------~ALeLL~~~f~d~~Vr~yAv~~L~~~~d~~l~~yL~Q 510 (940)
T 2wxf_A 440 EALARLLLVTKWNKHEDVAQMLYLLCSWPELPVL---------SALELLDFSFPDCYVGSFAIKSLRKLTDDELFQYLLQ 510 (940)
T ss_dssp GGHHHHHTTSCTTCHHHHHHHHHHHHTCCCCCHH---------HHHHHTSTTCCCHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hHHHHHHhccCCCCHHHHHHHHHHHccCCCCCHH---------HHHHhcCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4677788888877655444556777788433210 010 01134577777788999999999999999
Q ss_pred hhhccccCchHHHHHHHHHHHHHHHh--chhhHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCCCchhchHHHHHHHH
Q 000134 1602 LVSRICHQNEEIVRLVKHIITSVLRQ--YPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGNSANNLFGQFTSLI 1679 (2096)
Q Consensus 1602 LisRl~h~~~~v~~~l~~il~kv~~~--yPqq~lw~l~~~~~S~~~~R~~~~~~Il~~~~~~~~~~~~~~~li~~~~~l~ 1679 (2096)
||+.|.|.+..-..+..-||.+...+ ++|+.+|+|.+.+.+ +....+...+++.+..... ... ..+.....+.
T Consensus 511 LVQaLkyE~~~~s~L~~fLl~ra~~n~~i~h~l~W~l~~e~~~--~~~~~r~~~ile~~~~~~~--~~~-~~l~~q~~~~ 585 (940)
T 2wxf_A 511 LVQVLKYESYLDCELTKFLLGRALANRKIGHFLFWHLRSEMHV--PSVALRFGLIMEAYCRGST--HHM-KVLMKQGEAL 585 (940)
T ss_dssp HHHHGGGCSSSSCHHHHHHHHHHHHCHHHHHHHHHHHHTTTTC--HHHHHHHHHHHHHHHHHCH--HHH-HHHHHHHHHH
T ss_pred HHHHHhhccccccHHHHHHHHHHHhChHHHHHHHHHheecccC--chHHHHHHHHHHHHHhhcH--HHH-HHHHHHHHHH
Confidence 99999998543345666677777744 899999999887654 4456677888888765432 111 2333344677
Q ss_pred HHHHHHhhccCCccccccchhHhhHHHHhhccCCcccccccccccccCCCCCCCCCCCCCCCCCCCCcceEeeec-CceE
Q 000134 1680 DHLIKLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIA-DEAE 1758 (2096)
Q Consensus 1680 ~~Li~l~~~~~~~~~~~~~l~~~f~~l~~~~~~~~i~P~~~~l~~~LP~~~~~~~~~~~~~~f~~~~~v~I~~f~-~~v~ 1758 (2096)
++|.+++..... .....+-.+....|++.+...- . ...+|+ .+. |..+.++|.+|. +.+.
T Consensus 586 ~~L~~i~~~ik~-~~~~~~r~k~~~~L~~~l~~~~------~-~~~~~~---------~~l--P~~P~~~I~~~~~~~~~ 646 (940)
T 2wxf_A 586 SKLKALNDFVKV-SSQKTTKPQTKEMMHMCMRQET------Y-MEALSH---------LQS--PLDPSTLLEEVCVEQCT 646 (940)
T ss_dssp HHHHHHHHHHHH-HTTTSCHHHHHHHHHHHHTSHH------H-HHHHSS---------EEE--TTEEEEEECEECGGGCE
T ss_pred HHHHHHHHHHhh-ccccccHHHHHHHHHHHHhccc------h-hhccCC---------CCC--CCCCceeEEEeccCceE
Confidence 788877753210 0000111122333444322100 0 001111 112 224568999997 7899
Q ss_pred EecCCCcceEEEEEecC---CCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcceeE
Q 000134 1759 ILSSLQRPKKIVLLGSD---GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVE 1835 (2096)
Q Consensus 1759 V~~S~q~PkrI~i~gsD---Gk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIE 1835 (2096)
|++|+++||+|+|+|+| |+.|+|++|++||||||+|+||++++||.+|+++ +|+|.+++|.|||+++++||||
T Consensus 647 V~~S~~~P~~l~~~gsD~~~G~~~~~i~K~gDDLRqD~rv~Ql~~lmn~il~~~----~~~L~i~~Y~Vipls~~~GlIE 722 (940)
T 2wxf_A 647 FMDSKMKPLWIMYSSEEAGSAGNVGIIFKNGDDLRQDMLTLQMIQLMDVLWKQE----GLDLRMTPYGCLPTGDRTGLIE 722 (940)
T ss_dssp ECSSTTCCEEEEEECTTTGGGGCEEEEEEESSCCHHHHHHHHHHHHHHHHHHHT----TCCCCCCCCCEEEEETTEEEEE
T ss_pred EcccccCCeEEEEEecCcCCCcceeEEEecCcccchhHHHHHHHHHHHHHHHhC----CCCeEEEeeeEEEecCCCCeEe
Confidence 99999999999999999 9999999999999999999999999999999997 4799999999999999999999
Q ss_pred ecCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCC-chHHHHHHHhhCCChhHHHHHHH
Q 000134 1836 WVPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMF-PPVFHKWFLTTFSEPAAWFRARV 1914 (2096)
Q Consensus 1836 wv~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~pvl~~wf~~~f~~p~~w~~~R~ 1914 (2096)
||+|+.|+++|+.+ .+.... ...+ .+++++||.+.+|+ ..|+.+|.
T Consensus 723 ~V~ns~tl~~I~~~----~~~~~~----------------------------~~~f~~~~l~~~~~~~~~~-~~~~~a~~ 769 (940)
T 2wxf_A 723 VVLHSDTIANIQLN----KSNMAA----------------------------TAAFNKDALLNWLKSKNPG-EALDRAIE 769 (940)
T ss_dssp CCSSEEEHHHHHTC----CSSSTT----------------------------CCSSGGGHHHHHHHHHSCT-THHHHHHH
T ss_pred ECCCCccHHHHHHh----hccchh----------------------------hhccCchhHHHHHHHhCCH-HHHHHHHH
Confidence 99999999998642 111100 0012 24789999999954 67778999
Q ss_pred HHHHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccC-CCCC-CCCCCccccHHHHHhhcCC--Ccc--
Q 000134 1915 AYAHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGL-LLEK-PELVPFRLTQNMIDGLGIT--GYE-- 1988 (2096)
Q Consensus 1915 ~ft~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~-~l~~-pE~VPFRLT~nmv~~mG~~--G~e-- 1988 (2096)
+|++|+|+|||+|||||||||||+|||||+ ||+++|||||++|+.++ .+.. ||.|||||||||+++||+. |.+
T Consensus 770 ~F~~S~A~~Svv~YILGlgDRH~~NILid~-tG~v~HIDFG~~f~~~~~~l~~~pE~VPFRLT~~mv~~mg~g~~~~s~~ 848 (940)
T 2wxf_A 770 EFTLSCAGYCVATYVLGIGDRHSDNIMIRE-SGQLFHIDFGHFLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNNSEK 848 (940)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCGGGEEEET-TSCEEECCCCCCTTCC---------CCCCCCCHHHHHHHTTTCSCCHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCcccEEEec-CCCEEEEeehhhhcccccccCCCCCCCCccCCHHHHHHHcCCCCCCCcc
Confidence 999999999999999999999999999995 99999999999999763 4555 9999999999999999863 444
Q ss_pred -chHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHhhccccccCCCCCCCCC
Q 000134 1989 -GTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLA 2067 (2096)
Q Consensus 1989 -G~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g~~~~~~~~~~~~ls 2067 (2096)
|.|+.+|+.++++||+|++.|+++|++|++||+.+|... ..+..+++|+.--.. +-.
T Consensus 849 ~g~Fr~~c~~~~~~LR~~~~~ll~ll~lml~~~lp~~~~~--------------~~i~~l~~r~~l~~s--------e~e 906 (940)
T 2wxf_A 849 FERFRGYCERAYTILRRHGLLFLHLFALMRAAGLPELSCS--------------KDIQYLKDSLALGKT--------EEE 906 (940)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHGGGCCTTSCSH--------------HHHHHHHHHHTTTSC--------HHH
T ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCcccCch--------------HHHHHHHHHhCCCCC--------HHH
Confidence 899999999999999999999999999999999999641 346677788752111 112
Q ss_pred HHHHHHHHHHHHhC
Q 000134 2068 VEGQARRLIAEAVS 2081 (2096)
Q Consensus 2068 v~~qV~~LI~~Atd 2081 (2096)
...++..+|++|.+
T Consensus 907 a~~~~~~~i~~s~~ 920 (940)
T 2wxf_A 907 ALKHFRVKFNEALR 920 (940)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34567899999873
|
| >3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-55 Score=559.69 Aligned_cols=462 Identities=18% Similarity=0.290 Sum_probs=332.8
Q ss_pred HHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhhHhHHHHHHHHHHhhcCCCCCchhhhhhHHhhhcc
Q 000134 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRI 1606 (2096)
Q Consensus 1527 ~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iP~~~wl~~lPQLisRl 1606 (2096)
.|+.-|++|+......-......+|.-|-.......-.- -.. .-.+..|.+..-+.+..++....+.+|||||+.+
T Consensus 63 ~aL~kfL~sV~W~~~~e~~~a~~LL~~W~~i~~~dALEL--L~~--~f~d~~VR~yAV~~L~~~~D~eL~lYLlQLVQAL 138 (614)
T 3ls8_A 63 KALTKFLKCVNWDLPQEAKQALELLGKWKPMDVEDSLEL--LSS--HYTNPTVRRYAVARLRQADDEDLLMYLLQLVQAL 138 (614)
T ss_dssp GGHHHHHTTCCTTSHHHHHHHHHHHHHSCCCCHHHHGGG--GST--TCCCHHHHHHHHHHHTTSCHHHHHHTHHHHHHHG
T ss_pred hHHHHHhccCCCCCHHHHHHHHHHHhhCCCCCHHHHHHh--Ccc--cCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHhh
Confidence 477888999988876544334589999954432100000 000 0112346666667789999999999999999999
Q ss_pred ccCchHH--------------------------------------------------------------HHHHHHHHHHH
Q 000134 1607 CHQNEEI--------------------------------------------------------------VRLVKHIITSV 1624 (2096)
Q Consensus 1607 ~h~~~~v--------------------------------------------------------------~~~l~~il~kv 1624 (2096)
.+.+-.- ..+..-+|.|.
T Consensus 139 KyE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~La~FLi~RA 218 (614)
T 3ls8_A 139 KYENFDDIKNGLEPTKKDSQSSVSENVSNSGINSAEIDSSQIITSPLPSVSSPPPASKTKEVPDGENLEQDLCTFLISRA 218 (614)
T ss_dssp GGSCHHHHHHTC------------------------CCGGGSTTCCCCC-------------------CCCHHHHHHHHH
T ss_pred hcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCChHHHHHHHHH
Confidence 8764322 23566777777
Q ss_pred HHh--chhhHHHHHHHhhcCCC-----hhHHHHHHHHHHHHHhcCCCCC----chhchHHHHHHHHHHHHHHhhccCCcc
Q 000134 1625 LRQ--YPQQGLWIMAAVSKSTI-----PSRREAAAEIIQAAKKGSAHGN----SANNLFGQFTSLIDHLIKLCFHAGQSK 1693 (2096)
Q Consensus 1625 ~~~--yPqq~lw~l~~~~~S~~-----~~R~~~~~~Il~~~~~~~~~~~----~~~~li~~~~~l~~~Li~l~~~~~~~~ 1693 (2096)
..+ --+..+|++.+-+.... +.-.+++..++..+......+. .....+.....+.+.|.+++.......
T Consensus 219 l~n~~ig~~lyW~L~~E~~~~~~~~~~~~~~~~Y~~vl~~~l~~l~~g~~~~~~~r~~L~~Q~~~~~~L~~l~~~v~~~~ 298 (614)
T 3ls8_A 219 CKNSTLANYLYWYVIVECEDQDTQQRDPKTHEMYLNVMRRFSQALLKGDKSVRVMRSLLAAQQTFVDRLVHLMKAVQRES 298 (614)
T ss_dssp HTCHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred hcCHHHHHHHHhheeeeccCccccccchHHHHHHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 654 35677999988765421 1112344445444332111111 112233344466777777664211100
Q ss_pred ccccchhHhhHHHHhhccCCcccccccccccccCCCCCCCCCCCCCCCCCCCCcceEeeecC-ceEEecCCCcceEEEEE
Q 000134 1694 SRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIAD-EAEILSSLQRPKKIVLL 1772 (2096)
Q Consensus 1694 ~~~~~l~~~f~~l~~~~~~~~i~P~~~~l~~~LP~~~~~~~~~~~~~~f~~~~~v~I~~f~~-~v~V~~S~q~PkrI~i~ 1772 (2096)
. +..+.-..++.+... |. ...++.. ..-++|..+.++|.+|.+ .+.|++|+++||+|+|+
T Consensus 299 ~---~~~kk~e~L~~~L~~----~~----~~~l~~~--------~~~~lPl~P~v~I~~i~p~~~~V~~Sk~~P~~l~~~ 359 (614)
T 3ls8_A 299 G---NRKKKNERLQALLGD----NE----KMNLSDV--------ELIPLPLEPQVKIRGIIPETATLFKSALMPAQLFFK 359 (614)
T ss_dssp S---CHHHHHHHHHHHHHC----HH----HHCCSSC--------SSEEETTEEEEEEEEECGGGCEECSSTTCCEEEEEE
T ss_pred c---chHHHHHHHHHHHhc----hh----hcccccC--------CCCCCCCCCceEEEEEecCeeEEeecccCeEEEEEE
Confidence 0 000111122222110 00 0111110 112455567899999985 79999999999999999
Q ss_pred ecCCCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcceeEecCCCccHHHHHHHHHH
Q 000134 1773 GSDGIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTRGLRNILQDIYI 1852 (2096)
Q Consensus 1773 gsDGk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~tl~~il~~~~~ 1852 (2096)
|+||+.|+|++|++||||||+|+||++++||.+|+++ +++|.+++|.|||+++++||||||++ .|+.+++.+
T Consensus 360 gsDG~~y~~i~K~gDDLRQD~~~~Ql~~l~n~il~~~----~ldL~i~~Y~Vipls~~~GlIE~V~~-~tl~~il~~--- 431 (614)
T 3ls8_A 360 TEDGGKYPVIFKHGDDLRQDQLILQIISLMDKLLRKE----NLDLKLTPYKVLATSTKHGFMQFIQS-VPVAEVLDT--- 431 (614)
T ss_dssp ETTSCEEEEEEEESSCCHHHHHHHHHHHHHHHHHHHT----TCCCCCCCCCEEESSSSEEEEECCCC-EEHHHHHHH---
T ss_pred ccCCCEEEEEEecCCcchHHHHHHHHHHHHHHHHHhc----CCCceeeccEEEEecCCCceEEEeCC-ccHHHHHHc---
Confidence 9999999999999999999999999999999999987 47999999999999999999999997 578777642
Q ss_pred hcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHH----HHHHHHHHHHhhHHHHHhh
Q 000134 1853 SCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAW----FRARVAYAHTTAVWSMVGH 1928 (2096)
Q Consensus 1853 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w----~~~R~~ft~S~Av~S~vgY 1928 (2096)
.| .+.+||.+.+|++..| +.+|.+|++|+|+|||+||
T Consensus 432 -~~--------------------------------------~l~~~f~~~~~~~~~~~~~~~~a~~nF~~S~A~ySvv~Y 472 (614)
T 3ls8_A 432 -EG--------------------------------------SIQNFFRKYAPSENGPNGISAEVMDTYVKSCAGYCVITY 472 (614)
T ss_dssp -TS--------------------------------------SHHHHHHHHSBCTTSGGGBCHHHHHHHHHHHHHHHHHHH
T ss_pred -cC--------------------------------------hHHHHHHHhCCCccccccccHHHHHHHHHHHHHHhHhhe
Confidence 00 2456888888887766 4799999999999999999
Q ss_pred hccccCCCCCceeeecCCCcEEeeeccccccccCCCCCCCCCCccccHHHHHhhcCCCccc--hHHHHHHHHHHHHHhCh
Q 000134 1929 IVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGLLLEKPELVPFRLTQNMIDGLGITGYEG--TFLRVCEITLSVLRTHR 2006 (2096)
Q Consensus 1929 ILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~~l~~pE~VPFRLT~nmv~~mG~~G~eG--~F~~~~~~t~~~LR~~~ 2006 (2096)
||||||||++||||| .||+++|||||++|+++ ++||.||||||+||+++||+.|+|| .|+.+|+.++.+||+|.
T Consensus 473 ILGigDRH~~NILld-~tG~v~HIDFG~~f~~~---p~pe~vPFRLT~~mv~~mG~~~~e~f~~Fr~~c~~~~~~LR~~~ 548 (614)
T 3ls8_A 473 ILGVGDRHLDNLLLT-KTGKLFHIDFGYILGRD---PKPLPPPMKLNKEMVEGMGGTQSEQYQEFRKQCYTAFLHLRRYS 548 (614)
T ss_dssp HHTCCCCCTTSEEEC-TTSCEEECCCSSCTTCC---SSSSCCSSCCCHHHHHHTTCTTSHHHHHHHHHHHHHHHHHHHTH
T ss_pred eeeccCCCCcceeEc-CCCCEeeeehHHhhccC---CCCCCCCeecCHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHCH
Confidence 999999999999999 69999999999999987 5799999999999999999999997 99999999999999999
Q ss_pred hhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHhhccccccCCCCCCCCCHHHHHHHHHHHHhCc
Q 000134 2007 ETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARRLIAEAVSH 2082 (2096)
Q Consensus 2007 ~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g~~~~~~~~~~~~lsv~~qV~~LI~~Atd~ 2082 (2096)
+.|++++++|+.+++.+|.... ..++..+++|+.--.. .--...++..||+++.+.
T Consensus 549 ~~il~l~~lM~~s~lp~~~~~~------------~~~i~~l~~rf~l~ls--------e~ea~~~~~~lI~~S~~s 604 (614)
T 3ls8_A 549 NLILNLFSLMVDANIPDIALEP------------DKTVKKVQDKFRLDLS--------DEEAVHYMQSLIDESVHA 604 (614)
T ss_dssp HHHHHHHHTTTTSCCHHHHTSG------------GGHHHHHHHHTTTTSC--------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCccccCh------------HHHHHHHHHHcCCCCC--------HHHHHHHHHHHHHHHHhh
Confidence 9999999999999999986421 2568888888863221 112446788999988654
|
| >2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-55 Score=589.20 Aligned_cols=468 Identities=18% Similarity=0.240 Sum_probs=343.3
Q ss_pred HHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhhHhHHHHHHHHHHhhcCCCCCchhhhhhHHhhhcc
Q 000134 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLTVLPQLVSRI 1606 (2096)
Q Consensus 1527 ~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iP~~~wl~~lPQLisRl 1606 (2096)
.++.-+++|+.+.+......+..+|.-|-.......-. --... -.+..|.+..-+.+..+|...++.+|||||+.|
T Consensus 593 ~aL~k~l~sv~w~~~~e~~e~~~lL~~W~~i~p~~ALe--LL~~~--f~d~~VR~yAV~~L~~~~d~~l~~yLpQLVQaL 668 (1092)
T 2y3a_A 593 QSLPKLLLSIKWNKLEDVAQLQALLQIWPKLPPREALE--LLDFN--YPDQYVREYAVGCLRQMSDEELSQYLLQLVQVL 668 (1092)
T ss_dssp GGHHHHHHHSCTTCHHHHHHHHHHHHTSCCCCHHHHGG--GGSTT--CCCTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHccCCCCCHHHHHH--hcCcc--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 47777888888876654455667888884332100000 00000 012345566667788999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHHHHh--chhhHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCCCchhchHHHHHHHHHHHHH
Q 000134 1607 CHQNEEIVRLVKHIITSVLRQ--YPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDHLIK 1684 (2096)
Q Consensus 1607 ~h~~~~v~~~l~~il~kv~~~--yPqq~lw~l~~~~~S~~~~R~~~~~~Il~~~~~~~~~~~~~~~li~~~~~l~~~Li~ 1684 (2096)
.|.......+..-||.+...+ ++|+.+|+|.+.+.. +....+...+++.+...... .. ..+.....++++|.+
T Consensus 669 kyE~~~~s~L~~fLl~ra~~n~~i~h~l~W~L~~e~~~--~~~~~r~~~lle~~~~~~~~--~~-~~l~~Q~~~~~~L~~ 743 (1092)
T 2y3a_A 669 KYEPFLDCALSRFLLERALDNRRIGQFLFWHLRSEVHT--PAVSVQFGVILEAYCRGSVG--HM-KVLSKQVEALNKLKT 743 (1092)
T ss_dssp HHCSSSSCHHHHHHHHHHTSCSSHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHTTT--TH-HHHHHHHHHHHHHHH
T ss_pred hcccccccHHHHHHHHHHhhChHHHHHHHHHeeecccC--chHHHHHHHHHHHHHhhcHH--HH-HHHHHHHHHHHHHHH
Confidence 987644356677777777764 799999999988754 44556777888887765432 22 233333467778887
Q ss_pred HhhccCCccccccchhHhhHHHHhhccCCcccccccccccccCCCCCCCCCCCCCCCCCCCCcceEeeec-CceEEecCC
Q 000134 1685 LCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIA-DEAEILSSL 1763 (2096)
Q Consensus 1685 l~~~~~~~~~~~~~l~~~f~~l~~~~~~~~i~P~~~~l~~~LP~~~~~~~~~~~~~~f~~~~~v~I~~f~-~~v~V~~S~ 1763 (2096)
+|..... ..+..+-.+....|++.+...- . ...+|+ .+ .|..+.++|.+|. +.+.|++|+
T Consensus 744 is~~ik~-~~~~~~r~k~~e~L~~~l~~~~------~-~~~~~~---------~~--lP~~P~v~I~~~~~~~~~V~~S~ 804 (1092)
T 2y3a_A 744 LNSLIKL-NAVKLSRAKGKEAMHTCLKQSA------Y-REALSD---------LQ--SPLNPCVILSELYVEKCKYMDSK 804 (1092)
T ss_dssp HHHHHHH-HHHHSCHHHHHHHHHHHHHSTT------H-HHHTSS---------SC--CSSCSSBCCCCCCGGGCEECSST
T ss_pred HHHHHhh-ccccccHHHHHHHHHHHhhccc------h-hhcCCC---------CC--CCCCCceEEEEEecCceEEeccc
Confidence 7743210 0000111112233443321100 0 011121 12 2335778999997 689999999
Q ss_pred CcceEEEEEecC--CCeeeEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcceeEecCCCc
Q 000134 1764 QRPKKIVLLGSD--GIKRPFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEWVPHTR 1841 (2096)
Q Consensus 1764 q~PkrI~i~gsD--Gk~y~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIEwv~n~~ 1841 (2096)
++||+|+|+|+| |+.|+||+|++||||||+|+||++++||.+|+++ +|+|.+++|.|||+++++||||||+|+.
T Consensus 805 ~~P~rL~~~gsD~~G~~y~~L~K~gDDLRQD~rv~Ql~~lmn~ll~~~----~~~L~i~~Y~Vipls~~~GLIE~V~ns~ 880 (1092)
T 2y3a_A 805 MKPLWLVYSSRAFGEDSVGVIFKNGDDLRQDMLTLQMLRLMDLLWKEA----GLDLRMLPYGCLATGDRSGLIEVVSTSE 880 (1092)
T ss_dssp TCCEEEEEECTTTSSSEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHH----SCCCCCCCCCEECCSSSCCEEECCTTCC
T ss_pred cCceEEEEEecCCCCceeeEEEecCcccchhHHHHHHHHHHHHHHHhC----CCCeEEecceEEEecCCCCeEeeCCCCc
Confidence 999999999999 9999999999999999999999999999999987 4799999999999999999999999999
Q ss_pred cHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHHHHHHHHHHHHhh
Q 000134 1842 GLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAYAHTTA 1921 (2096)
Q Consensus 1842 tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w~~~R~~ft~S~A 1921 (2096)
|+++|+.+ .+.... .+ ..-.+++++||.+.++ +..|+.+|.+|++|+|
T Consensus 881 TL~~I~~~----~~~~~~--------------~~-------------~f~~~~L~~~~~~~~~-~~~~~~ar~nF~~SlA 928 (1092)
T 2y3a_A 881 TIADIQLN----SSNVAA--------------TA-------------AFNKDALLNWLKEYNS-GDDLDRAIEEFTLSCA 928 (1092)
T ss_dssp BHHHHHSS----SCTTTT--------------TS-------------CSSTTHHHHHHHHHCC-THHHHHHHHHHHHHHH
T ss_pred cHHHHHHh----hccchh--------------hh-------------ccCchHHHHHHHHhCC-HHHHHHHHHHHHHHHH
Confidence 99998642 111100 00 0113578999999994 4678899999999999
Q ss_pred HHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccC-CCC-CCCCCCccccHHHHHhhcCC--Ccc---chHHHH
Q 000134 1922 VWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGL-LLE-KPELVPFRLTQNMIDGLGIT--GYE---GTFLRV 1994 (2096)
Q Consensus 1922 v~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~-~l~-~pE~VPFRLT~nmv~~mG~~--G~e---G~F~~~ 1994 (2096)
+|||+|||||||||||+|||||+ ||+++|||||++|+.++ .+. .||.|||||||||+++||+. |.+ |.|+.+
T Consensus 929 ~ySvv~YILGlGDRH~~NILid~-tG~v~HIDFG~~f~~~~~~l~~~pE~VPFRLT~~mv~~mg~g~~~~s~~fg~Fr~~ 1007 (1092)
T 2y3a_A 929 GYCVASYVLGIGDRHSDNIMVKK-TGQLFHIDFGHILGNFKSKFGIKRERVPFILTYDFIHVIQQGKTGNTEKFGRFRQC 1007 (1092)
T ss_dssp HHHHHHHHTTCCCCCTTTEEECT-TSCEEECCCSCCSSCCCCGGGCCCCCCCCCCCHHHHHHHHTTCSSCSSSTTHHHHH
T ss_pred HHHHHHHHhcCCCCCCccEEEec-CCCEEEEeehhhhhcCCccCCCCCCCCCccCCHHHHHHHccCCCCCCcchhhHHHH
Confidence 99999999999999999999995 99999999999999763 454 49999999999999999753 454 999999
Q ss_pred HHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHhhccccccCCCCCCCCCHHHHHHH
Q 000134 1995 CEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLAVEGQARR 2074 (2096)
Q Consensus 1995 ~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g~~~~~~~~~~~~lsv~~qV~~ 2074 (2096)
|+.++++||+|++.|++++++|++||+.+|... ..+..+++|+.--.. .-....++..
T Consensus 1008 c~~a~~~LR~~~~~Il~ll~lml~~~Lp~~~~~--------------~~i~~lr~rf~l~~s--------eeeA~~~~~~ 1065 (1092)
T 2y3a_A 1008 CEDAYLILRRHGNLFITLFALMLTAGLPELTSV--------------KDIQYLKDSLALGKS--------EEEALKQFKQ 1065 (1092)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHTSTTCCSSCSSH--------------HHHHHHHHHTTCSSC--------HHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHhCCCCccccch--------------hHHHHHHHhhCCCCC--------HHHHHHHHHH
Confidence 999999999999999999999999999999641 346667777752111 1123456789
Q ss_pred HHHHHhC
Q 000134 2075 LIAEAVS 2081 (2096)
Q Consensus 2075 LI~~Atd 2081 (2096)
+|++|.+
T Consensus 1066 ~I~~s~~ 1072 (1092)
T 2y3a_A 1066 KFDEALR 1072 (1092)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999873
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=548.22 Aligned_cols=467 Identities=17% Similarity=0.206 Sum_probs=328.0
Q ss_pred HHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhhHhHHHHHHHHHHhhc-CCCCCchhhhhhHHhhhc
Q 000134 1527 DVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCL-KDLPAYQWLTVLPQLVSR 1605 (2096)
Q Consensus 1527 ~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~iP~~~wl~~lPQLisR 1605 (2096)
.++.-+++|+...+......+..+|.-|-.......-.- -.. .-.+..|.+..-+.+ ..+|....+..|||||+.
T Consensus 586 ~aL~k~L~sV~W~~~~e~~e~~~LL~~W~~i~~~~ALeL--L~~--~f~d~~VR~yAV~~L~~~~~ddeLl~YLlQLVQA 661 (1091)
T 3hhm_A 586 EILPKLLLSVKWNSRDEVAQMYCLVKDWPPIKPEQAMEL--LDC--NYPDPMVRGFAVRCLEKYLTDDKLSQYLIQLVQV 661 (1091)
T ss_dssp GGHHHHHTTSCTTCHHHHHHHHHHHHTCCCCCHHHHHHT--TST--TCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHG
T ss_pred hHHHHHheeCCCCCHHHHHHHHHHHhcCCCCCHHHHHHh--Ccc--cCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 578888888888776544456688888843321100000 000 001234555555667 789999999999999999
Q ss_pred cccCchHHHHHHHHHHHHHHHh--chhhHHHHHHHhhcCCChhHHHHHHHHHHHHHhcCCCCCchhchHHHHHHHHHHHH
Q 000134 1606 ICHQNEEIVRLVKHIITSVLRQ--YPQQGLWIMAAVSKSTIPSRREAAAEIIQAAKKGSAHGNSANNLFGQFTSLIDHLI 1683 (2096)
Q Consensus 1606 l~h~~~~v~~~l~~il~kv~~~--yPqq~lw~l~~~~~S~~~~R~~~~~~Il~~~~~~~~~~~~~~~li~~~~~l~~~Li 1683 (2096)
|.+....-..+..-||.|..++ .-|+.+|+|.+-+.... -..+...+++.....+. .....+..| ..+.+.|.
T Consensus 662 LKyE~~~ds~La~FLl~RAl~n~~igh~lfW~L~~E~~~~~--~~~r~~~lLe~~~~~~~--~~~~~l~rQ-~~~~~~L~ 736 (1091)
T 3hhm_A 662 LKYEQYLDNLLVRFLLKKALTNQRIGHFFFWHLKSEMHNKT--VSQRFGLLLESYCRACG--MYLKHLNRQ-VEAMEKLI 736 (1091)
T ss_dssp GGGCSSSSCHHHHHHHHHHTTCHHHHHHHHHHHHTTTTCTT--THHHHHHHHHHHHHHSC--THHHHHHHH-HHHHHHHH
T ss_pred HhhccccccHHHHHHHHHHhhCHHHHHHHHHHeeecccCch--HHHHHHHHHHHHHhhCH--HHHHHHHHH-HHHHHHHH
Confidence 9987533245555666665543 57888999988764432 23456677777765443 222233333 45777777
Q ss_pred HHhhccCCccccccchhHhhHHHHhhccCCcccccccccccccCCCCCCCCCCCCCCCCCCCCcceEeeec-CceEEecC
Q 000134 1684 KLCFHAGQSKSRTINISTEFSALKRMMPLGIIMPIQQSLTVTLPPQDANLTESPSSDIFSASDLPTISGIA-DEAEILSS 1762 (2096)
Q Consensus 1684 ~l~~~~~~~~~~~~~l~~~f~~l~~~~~~~~i~P~~~~l~~~LP~~~~~~~~~~~~~~f~~~~~v~I~~f~-~~v~V~~S 1762 (2096)
+++........ ..+-...-..++..+... .. ...+. . -+.|..+.++|.+|. +.+.|++|
T Consensus 737 ~is~~ik~~~~-~~~~~~k~~~L~~~L~~~---~~-----~~~~~--------~--~~lPl~P~~~I~~i~~~~~~V~~S 797 (1091)
T 3hhm_A 737 NLTDILKQEKK-DETQKVQMKFLVEQMRRP---DF-----MDALQ--------G--FLSPLNPAHQLGNLRLEECRIMSS 797 (1091)
T ss_dssp HHHHHTTSTTC-CSCHHHHHHHHHHHHHSH---HH-----HHHSS--------S--EEETTEEEEEECSBCGGGCEECCS
T ss_pred HHHHHHhhhcc-ccchHHHHHHHHHHHhcc---ch-----hhccc--------C--CCCCCCcceEEEEEeeceEEEeec
Confidence 77754322110 000011011122211000 00 00000 0 012334668999997 67999999
Q ss_pred CCcceEEEEEecC--CCee----eEEecCCCcchhhHHHHHHHHHHHHHhccCCcccCCCeeeeecceeeecCCcceeEe
Q 000134 1763 LQRPKKIVLLGSD--GIKR----PFLCKPKDDLRKDSRMMEFTAMINRLLSKYPESRRRKLYIRTFAVIPLTEDCGMVEW 1836 (2096)
Q Consensus 1763 ~q~PkrI~i~gsD--Gk~y----~fL~K~~dDlR~D~R~mQl~~liN~lL~~~~etrrR~L~i~tY~ViPLs~~~GLIEw 1836 (2096)
+++|++|+|+|+| |+.| .|++|++||||||+|+||++++||.+|++++ ++|.+++|.|||+++++|||||
T Consensus 798 ~~~P~~L~f~g~D~~G~~y~~~~~~i~K~gDDLRQD~~v~Qli~lmn~il~~~~----~dL~l~~Y~Vip~s~~~GlIE~ 873 (1091)
T 3hhm_A 798 AKRPLWLNWENPDIMSELLFQNNEIIFKNGDDLRQDMLTLQIIRIMENIWQNQG----LDLRMLPYGCLSIGDCVGLIEV 873 (1091)
T ss_dssp SSCCEEEEECCCSTTSTTTSCCEEEEEEESSCCHHHHHHHHHHHHHHHHHHTTT----CCCCCCCCCEEEEETTEEEEEC
T ss_pred ccCcEEEEEecCCCCCccccccceEEEEcCcchhHHHHHHHHHHHHHHHHHhCC----CCceEeeeeEEEccCCCcceee
Confidence 9999999999998 8999 9999999999999999999999999999984 8999999999999999999999
Q ss_pred cCCCccHHHHHHHHHHhcCCCccccCChHHHHHHHHHhcCCChHHHHHHhhcCCCchHHHHHHHhhCCChhHHHHHHHHH
Q 000134 1837 VPHTRGLRNILQDIYISCGKFDRQKTNPQIKRIYDQFQGKIPEDEMLKTKILPMFPPVFHKWFLTTFSEPAAWFRARVAY 1916 (2096)
Q Consensus 1837 v~n~~tl~~il~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pvl~~wf~~~f~~p~~w~~~R~~f 1916 (2096)
|+|+.|+++|+.+. |... .. ..-++++++||.+.| ++..|+.+|.+|
T Consensus 874 V~ns~Tl~~I~~~~----~~~~---------------~~-------------~f~~~~L~~~f~~~~-~~~~~~~ar~nF 920 (1091)
T 3hhm_A 874 VRNSHTIMQIQCKG----GLKG---------------AL-------------QFNSHTLHQWLKDKN-KGEIYDAAIDLF 920 (1091)
T ss_dssp CSSEEEHHHHHHSC----TTTC---------------TT-------------CCCTTHHHHHHHTTS-CTTSHHHHHHHH
T ss_pred cCCchhHHHHHHhh----Cccc---------------cc-------------ccCchHHHHHHHhcC-ChHHHHHHHHHH
Confidence 99999999997531 1100 00 001357899999999 666789999999
Q ss_pred HHHhhHHHHHhhhccccCCCCCceeeecCCCcEEeeeccccccccC-CC-CCCCCCCccccHHHHHhhcC--CCcc----
Q 000134 1917 AHTTAVWSMVGHIVGLGDRHGENILFDSTTGDCVHVDFSCLFDKGL-LL-EKPELVPFRLTQNMIDGLGI--TGYE---- 1988 (2096)
Q Consensus 1917 t~S~Av~S~vgYILGLGDRH~eNILld~~tG~vvHIDF~~~F~kg~-~l-~~pE~VPFRLT~nmv~~mG~--~G~e---- 1988 (2096)
++|+|+|||+||||||||||++|||||+ ||+++|||||++|++++ .+ ..||.||||||+||+++||+ .|+|
T Consensus 921 ~~S~A~ysvv~YiLgigDRH~~NILid~-tG~v~HIDFG~~f~~~~~~~~~~~E~vPFrLT~~mv~vmg~G~~~~e~s~~ 999 (1091)
T 3hhm_A 921 TRSCAGYCVATFILGIGDRHNSNIMVKD-DGQLFHIDFGHFLDHKKKKFGYKRERVPFVLTQDFLIVISKGAQECTKTRE 999 (1091)
T ss_dssp HHHHHHHHHHHHHHTCCCCCTTTEEEET-TSCEEECCCCCCSCC------------CCCCCHHHHHHSSCSSSCCSSSHH
T ss_pred HHHhhhhhheEEEEeecCCCCcceEEeC-CCCEEEEeehhhhccCCccCCCCcCCCCceeHHHHHHHHhcCCCCcccchh
Confidence 9999999999999999999999999995 99999999999999864 33 46999999999999999964 4444
Q ss_pred -chHHHHHHHHHHHHHhChhhHHHHHHHHhcCCCcccccccCCCCccccchhHHHHHHHHHHHhhccccccCCCCCCCCC
Q 000134 1989 -GTFLRVCEITLSVLRTHRETLMSVLETFIHDPLVEWTKSHKSSGVEVENPHAQRAISNIEARLQGSVVGVGAAPSLPLA 2067 (2096)
Q Consensus 1989 -G~F~~~~~~t~~~LR~~~~~L~~iLe~fl~Dpl~~W~~~~~~~~~~~~n~~a~~~l~~i~~kL~g~~~~~~~~~~~~ls 2067 (2096)
|.|+.+|+.++.+||+|.+.|++++++|+++|+.+|... ..+..+++|+.--.. .-.
T Consensus 1000 fg~Fr~~c~~a~~~LR~~~~~il~LlelM~~s~lp~~~~~--------------~~i~~lr~rf~l~ls--------eee 1057 (1091)
T 3hhm_A 1000 FERFQEMCYKAYLAIRQHANLFINLFSMMLGSGMPELQSF--------------DDIAYIRKTLALDKT--------EQE 1057 (1091)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHGGGSCCTTCSSH--------------HHHHHHHHHSCCSSC--------HHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCccCch--------------HHHHHHHHHhCCCCC--------HHH
Confidence 999999999999999999999999999999999999641 346677888752211 012
Q ss_pred HHHHHHHHHHHHhC
Q 000134 2068 VEGQARRLIAEAVS 2081 (2096)
Q Consensus 2068 v~~qV~~LI~~Atd 2081 (2096)
...++..+|.+|.+
T Consensus 1058 A~~~f~~~i~~s~~ 1071 (1091)
T 3hhm_A 1058 ALEYFMKQMNDARH 1071 (1091)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHh
Confidence 34567788988874
|
| >1w1n_A Phosphatidylinositol 3-kinase TOR1; target of rapamycin, Ser/Thr kinase, redox-regulation, disulfide bond, transferase; NMR {Saccharomyces cerevisiae} PDB: 2kio_A 2kit_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2e-13 Score=107.38 Aligned_cols=32 Identities=38% Similarity=0.646 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHHhCcchhhhcCCcccCCC
Q 000134 2065 PLAVEGQARRLIAEAVSHKNLGKMYIWWMPWF 2096 (2096)
Q Consensus 2065 ~lsv~~qV~~LI~~Atd~~nL~~My~gW~Pwl 2096 (2096)
++||++||++||++|||++|||+||+||+|||
T Consensus 2 ~lsv~~QV~~LI~~At~~~NL~~my~GW~p~w 33 (33)
T 1w1n_A 2 ELDVPEQVDKLIQQATSIERLCQHYIGWCPFW 33 (33)
T ss_dssp CSCSTHHHHHHHHHHHHHHHHHTTSCSCCTTC
T ss_pred CCCHHHHHHHHHHHhcCHHHHHHHhhhcccCC
Confidence 68999999999999999999999999999997
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.02 E-value=4.5e-06 Score=114.51 Aligned_cols=668 Identities=15% Similarity=0.149 Sum_probs=367.5
Q ss_pred hcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccccccccc
Q 000134 12 ALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKNACKLLL 91 (2096)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (2096)
+|.|+...||..++..+-.|+-..+|.....+...|..........+++.-...||.+.--++.. .+... +
T Consensus 98 ~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~---~~~~~----~-- 168 (852)
T 4fdd_A 98 NIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI---LDSDV----L-- 168 (852)
T ss_dssp TTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTH---HHHCS----S--
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHH---hchhh----h--
Confidence 47888999999999999999887777666666666666666666677776655555554333211 00000 0
Q ss_pred ccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccchhhHHHHH
Q 000134 92 NVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRV 171 (2096)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~ 171 (2096)
+.....-+..+++++.-+.-+.+...-.-. ..++... .. ...-.+..+-+.+++++- ..+++|+.+++.+
T Consensus 169 ---~~~~~~il~~l~~~l~~~~~~vR~~A~~aL-~~~~~~~---~~--~~~~~~~~~l~~l~~~~~-d~~~~vr~~a~~~ 238 (852)
T 4fdd_A 169 ---DRPLNIMIPKFLQFFKHSSPKIRSHAVACV-NQFIISR---TQ--ALMLHIDSFIENLFALAG-DEEPEVRKNVCRA 238 (852)
T ss_dssp ---SSCHHHHHHHHTTTTTCSSHHHHHHHHHHH-HTTTTTT---CH--HHHTSHHHHHHHHHHHHT-CCCHHHHHHHHHH
T ss_pred ---cchHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHHHhcc---cH--HHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 000111122233333211100000000000 0011000 00 011123344455666554 4577899999999
Q ss_pred HHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHh--
Q 000134 172 IRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAF-- 249 (2096)
Q Consensus 172 l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 249 (2096)
|.++..+.... +..-....+..+-.++.|++..||..++..+..+.+.......+. .....++..+...+
T Consensus 239 L~~l~~~~~~~-~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~-------~~~~~l~p~ll~~l~~ 310 (852)
T 4fdd_A 239 LVMLLEVRMDR-LLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLV-------RHLPKLIPVLVNGMKY 310 (852)
T ss_dssp HHHHHHHCHHH-HGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHT-------TTHHHHHHHHHHHTSC
T ss_pred HHHHHHhCHHH-HHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHH-------HHHHHHHHHHHHHcCC
Confidence 99999876532 212122333333345589999999999988887664332111111 01112222222222
Q ss_pred ---------hh-----c-----CChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhh
Q 000134 250 ---------TA-----A-----DDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCF 310 (2096)
Q Consensus 250 ---------~~-----~-----~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~ 310 (2096)
.+ . .+..+......+++.+.... +.+++...+=.|.+.|.+++.-+|..|..-+-.++.
T Consensus 311 ~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~--~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~ 388 (852)
T 4fdd_A 311 SDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVY--RDELLPHILPLLKELLFHHEWVVKESGILVLGAIAE 388 (852)
T ss_dssp CHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHH--GGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTT
T ss_pred cHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 11 0 23357778888888885433 567777677778889999999999999999999987
Q ss_pred hhcccccccccchhhhhhhhhhHHHHHHhcCchHHHHHHHHHHhCCChHHHH-----Hhhcccccchhhhcc-ccChh--
Q 000134 311 FHLKGGCELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELV-----KKMIPAVLPKLVVSQ-QDNDQ-- 382 (2096)
Q Consensus 311 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~rp~~~~~~~e~llg~~~~~fL-----~~~~~~~LP~LVl~~-~~~~~-- 382 (2096)
.... .+.++. +.+.+.+...+......++.-|...+|- ..+.+ ......++|.|+-.- ..+..
T Consensus 389 ~~~~----~~~~~l----~~~l~~l~~~l~d~~~~Vr~~a~~~l~~-l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr 459 (852)
T 4fdd_A 389 GCMQ----GMIPYL----PELIPHLIQCLSDKKALVRSITCWTLSR-YAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQ 459 (852)
T ss_dssp TTHH----HHGGGH----HHHHHHHHHHTTCSSHHHHHHHHHHHHH-THHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHH
T ss_pred cchH----HHHHHH----HHHHHHHHHHcCCCCHHHHHHHHHHHHH-HHHHhccchHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 6533 122222 4556777777765444455533334441 11211 112234556665421 11222
Q ss_pred --HHHHHHHHHHHcCCCchhHHhhhHHHHHHHHh---ccccHH---HHHHHHHHHhhhcCC--ChHHHHHHhhHHHHHHH
Q 000134 383 --AVNIINELAKCLNTDMVPLIVTWIPKVLAFAL---HQADER---RLLSALEFYCIQTGS--DNQEIFAAALPALLDEL 452 (2096)
Q Consensus 383 --~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll---~~~~~~---~~~~~l~~~~~~~~~--~~~~~~~~~~~~~l~eL 452 (2096)
+...|..+++..+....+ +++.|+..|+ .+.... .+.+++..+....+. ...+.+...+|.++.-+
T Consensus 460 ~~a~~aL~~l~~~~~~~l~~----~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~ 535 (852)
T 4fdd_A 460 EAACSAFATLEEEACTELVP----YLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKW 535 (852)
T ss_dssp HHHHHHHHHHHHHHGGGGGG----GHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHhhHh----HHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHH
Confidence 335666777666654444 4555555444 222222 245666655433332 22345555566666432
Q ss_pred HHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhh------------cCCCChHHHHHHH
Q 000134 453 ICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKM------------LHAEDLSLQKQAL 520 (2096)
Q Consensus 453 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l------------~~~~~~~~k~~~l 520 (2096)
-.+.+.+.+- + .+.+++..+++.+. ..+..|+.+=+-.++..+...+ ...++...+..++
T Consensus 536 -~~l~d~~~~~---~--~~~~~l~~i~~~~g--~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l 607 (852)
T 4fdd_A 536 -NMLKDEDKDL---F--PLLECLSSVATALQ--SGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVAL 607 (852)
T ss_dssp -HHSCTTCTTH---H--HHHHHHHHHHHHHG--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHH
T ss_pred -HhcccccHHH---H--HHHHHHHHHHHHHh--HhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHH
Confidence 2333332211 1 24455555554432 2344555553333444444332 1123455677889
Q ss_pred HHHHHHHHHhccccccch--hhHHHHHHHHhcC--CCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccccCC
Q 000134 521 KRIEILIEMIGSHLTTYV--PKILVLLMHAINK--ESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDK 596 (2096)
Q Consensus 521 ~sl~~li~l~g~~v~~~~--pqI~a~L~~aL~~--~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~ 596 (2096)
..|+.+++-+|+++..+. ++++..|...++. ++++..++.+|..+...+. ..+.+++..++..++..++..
T Consensus 608 ~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~----~~~~~~l~~~lp~l~~~l~~~- 682 (852)
T 4fdd_A 608 DLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACF----QHVKPCIADFMPILGTNLNPE- 682 (852)
T ss_dssp HHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG----GGTGGGHHHHHHHHHHTCCTT-
T ss_pred HHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHcCcc-
Confidence 999999999999988886 8899988888864 5789999999999998753 578999999888888887421
Q ss_pred CCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCC--ChhHHHH
Q 000134 597 DNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHE--NLNVRYM 674 (2096)
Q Consensus 597 ~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~e--n~~Vr~~ 674 (2096)
.+ ..++.|...+..+...-.+.+ -|.++ .-+..+++.+++. +..|+..
T Consensus 683 -~~-~v~~~a~~alg~i~~~~~~~~---------~p~~~-------------------~il~~L~~~l~~~~~~~~~~~~ 732 (852)
T 4fdd_A 683 -FI-SVCNNATWAIGEISIQMGIEM---------QPYIP-------------------MVLHQLVEIINRPNTPKTLLEN 732 (852)
T ss_dssp -SH-HHHHHHHHHHHHHHHHHGGGG---------GGGTH-------------------HHHHHHHHHHTCSSCCHHHHHH
T ss_pred -ch-HHHHHHHHHHHHHHHHhhHhH---------HHHHH-------------------HHHHHHHHHhCCCCCCchHHHH
Confidence 22 345666666666653322111 12221 1122223333322 3467777
Q ss_pred HHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCccCccccccccccc
Q 000134 675 VVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQR 754 (2096)
Q Consensus 675 aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~r~~~~~~~~ 754 (2096)
+..-+.++...+.+.+. |-+++++..+++.-.+.. +.+-+..+.++|+.|=..-|+.+.
T Consensus 733 a~~~igrl~~~~~~~~~-----------~~l~~~~~~~~~~l~~~~----d~~e~~~a~~~l~~li~~~p~~~~------ 791 (852)
T 4fdd_A 733 TAITIGRLGYVCPQEVA-----------PMLQQFIRPWCTSLRNIR----DNEEKDSAFRGICTMISVNPSGVI------ 791 (852)
T ss_dssp HHHHHHHHHHHCHHHHG-----------GGHHHHHHHHHHHHHTSC----SSHHHHHHHHHHHHHHHHCGGGTG------
T ss_pred HHHHHHHHHHhCHHHhC-----------ccHHHHHHHHHHHhcccc----ccHHHHHHHHHHHHHHHhChHhHH------
Confidence 77777777766655332 346667777666554321 235678888888887666665332
Q ss_pred ccccccChhhHHHHHHHHHHHHHHcCCChhhHhHHHHHHHHHHHHc
Q 000134 755 FKIECSDDDLIFELIDKHLARAFRAAPDTIIQDSAALAIQELLKIA 800 (2096)
Q Consensus 755 ~~~~~~~~~f~~~ll~~~Lv~af~s~~dt~~Q~~~A~AiQElLk~~ 800 (2096)
.+|++ ++.|.-+-.+++.+ +.=+++.+|..+
T Consensus 792 -------~~~~~------~~~~~~~~~~~~~~--l~~~~~~~l~~~ 822 (852)
T 4fdd_A 792 -------QDFIF------FCDAVASWINPKDD--LRDMFCKILHGF 822 (852)
T ss_dssp -------GGHHH------HHHHHHTCSSCCHH--HHHHHHHHHHHH
T ss_pred -------HHHHH------HHHHHHhcCCCCHH--HHHHHHHHHHHH
Confidence 23442 34566666666443 444888888753
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.99 E-value=7.6e-06 Score=111.70 Aligned_cols=594 Identities=12% Similarity=0.095 Sum_probs=304.0
Q ss_pred hhhHHHHHHHhhccc-CccchhhHHHHHHHHHHccCCchhhhhh-hhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhh--
Q 000134 145 FSFLLNIYFEFLYDE-SSEEVQLSCVRVIRRILVHGTRDVLLKT-RSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQD-- 220 (2096)
Q Consensus 145 ~~~~~~~~~~~l~~~-~~~~v~~~~~~~l~~il~h~~~~~~~~~-~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~-- 220 (2096)
+..+-+.+...|-++ .+.+|+.+.+.+|..++.....+..... +...+..|..++.+++..+|.+++..+..+++.
T Consensus 177 ~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~ 256 (861)
T 2bpt_A 177 SNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYY 256 (861)
T ss_dssp HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 344556666777664 4788999999998887765432211000 011223334445788888888888877766521
Q ss_pred ---------hhhhhhcc---CcccccchhhHHHHH------------------------------------HHHHHhhhc
Q 000134 221 ---------TVLSSLFL---DENASSRSNELKLLD------------------------------------VIKLAFTAA 252 (2096)
Q Consensus 221 ---------~~~~~~~~---~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~ 252 (2096)
.++..+.. +.+...+..-..|+. .+...+...
T Consensus 257 ~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~ 336 (861)
T 2bpt_A 257 TFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQ 336 (861)
T ss_dssp GGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 22221111 111111111111221 111222211
Q ss_pred ------CChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhh
Q 000134 253 ------DDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVL 326 (2096)
Q Consensus 253 ------~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~ 326 (2096)
+++.+..+...+++.+.... +.+++...+=.+.+.|.+++.-+|-.|..-+-.++..... +.+.++.
T Consensus 337 ~~d~~d~~~~~r~~a~~~L~~l~~~~--~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~---~~~~~~l-- 409 (861)
T 2bpt_A 337 NEDPEDDDWNVSMSAGACLQLFAQNC--GNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDK---VQRTYYV-- 409 (861)
T ss_dssp CCC-CCCCCHHHHHHHHHHHHHHHHH--GGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH---HHHHHHH--
T ss_pred ccccccccCcHHHHHHHHHHHHHHHc--cHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCH---HHHHHHH--
Confidence 22456666666676664333 4556655555677778888888888888888888643321 1112222
Q ss_pred hhhhhhHHHHHHhcCchHHHHHHHHHHhCCChHHHHH------hhcccccchhhhccccChh----HHHHHHHHHHHcCC
Q 000134 327 ICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVK------KMIPAVLPKLVVSQQDNDQ----AVNIINELAKCLNT 396 (2096)
Q Consensus 327 ~~~~l~~~~~~~l~~rp~~~~~~~e~llg~~~~~fL~------~~~~~~LP~LVl~~~~~~~----~~~~i~~ia~~~~~ 396 (2096)
+.+.+.+...+......++.-|...+| ...+++. ...+.++|.|+-.-+.+.. +...+..+++..+.
T Consensus 410 --~~il~~l~~~l~d~~~~vr~~a~~~l~-~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~ 486 (861)
T 2bpt_A 410 --HQALPSILNLMNDQSLQVKETTAWCIG-RIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAE 486 (861)
T ss_dssp --HHHHHHHHHGGGCSCHHHHHHHHHHHH-HHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSS
T ss_pred --HHHHHHHHHHcCCCcHHHHHHHHHHHH-HHHHHhhhhcCCHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhccc
Confidence 344555665554322223332211222 0111110 1122334444432111211 22456666665542
Q ss_pred CchhHHhhhHHHHHHHHhc----ccc----HHHHHHHHHHHhhhcCCChHHHHHHhhHHHHHHHHHhhcC-----CCc--
Q 000134 397 DMVPLIVTWIPKVLAFALH----QAD----ERRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDG-----GDS-- 461 (2096)
Q Consensus 397 ~~~~l~~~~~~~Ila~ll~----~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~eLl~~~~~-----~~~-- 461 (2096)
.....+..+++.|+..|+. .+. +..+.++|..+....+.+....+...+|.++.-|.-.+.. .+.
T Consensus 487 ~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~ 566 (861)
T 2bpt_A 487 ATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDA 566 (861)
T ss_dssp SSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhH
Confidence 1112233455555554442 121 3456777777776666555556666666666544322111 111
Q ss_pred hhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccccccchhhH
Q 000134 462 DEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKI 541 (2096)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI 541 (2096)
++.......+..++..+.+.+. ..+..|+.+-+-.++..++..- .+ ..+..++.+++.+++.+|.++..+.|+|
T Consensus 567 ~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~l~~~l~~~l~~~~---~~-~v~~~~~~~l~~l~~~~~~~~~~~l~~i 640 (861)
T 2bpt_A 567 QSLQELQSNILTVLAAVIRKSP--SSVEPVADMLMGLFFRLLEKKD---SA-FIEDDVFYAISALAASLGKGFEKYLETF 640 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCG--GGTGGGHHHHHHHHHHHHHSTT---GG-GTHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHccCC---CC-cHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 1111111223444444443332 2344555544444444444211 11 4578899999999999999988899999
Q ss_pred HHHHHHHhc--CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHH
Q 000134 542 LVLLMHAIN--KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRA 619 (2096)
Q Consensus 542 ~a~L~~aL~--~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~ 619 (2096)
+-.|...++ .++.+..++.+-..+++.+. +.+.+++..++..++..+.... .....+..+...+..++...++
T Consensus 641 ~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~~l~~~l~~~l~~~~-~~~~vr~~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 641 SPYLLKALNQVDSPVSITAVGFIADISNSLE----EDFRRYSDAMMNVLAQMISNPN-ARRELKPAVLSVFGDIASNIGA 715 (861)
T ss_dssp HHHHHHHHHCTTSHHHHHHHHHHHHHHHHTG----GGGHHHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHhc----hhccchHHHHHHHHHHHhCCcc-ccHhhhHHHHHHHHHHHHHhhh
Confidence 988888885 34567777787777777764 4688889998888888775321 1123567788888777665433
Q ss_pred HHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCC
Q 000134 620 ILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEAC 699 (2096)
Q Consensus 620 ~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~ 699 (2096)
.+..|+..+ +|. +...++...+.-+ .+ ...+ ...||..++..+..++..-.+. . +..
T Consensus 716 ~~~~~l~~~-----l~~---l~~~~~~~~~~~d-~d-~~~~-------~~~vr~~~l~~~~~i~~~l~~~-~-----~~~ 772 (861)
T 2bpt_A 716 DFIPYLNDI-----MAL---CVAAQNTKPENGT-LE-ALDY-------QIKVLEAVLDAYVGIVAGLHDK-P-----EAL 772 (861)
T ss_dssp GGHHHHHHH-----HHH---HHHHHTCCCSSSS-HH-HHHH-------HHHHHHHHHHHHHHHHHHTTTC-H-----HHH
T ss_pred hHHHHHHHH-----HHH---HHHHHhcCCCCCC-hH-HHHH-------HHHHHHHHHHHHHHHHHHHccC-H-----HHH
Confidence 332222111 111 1111110000000 00 0001 1245666666666555332110 0 001
Q ss_pred CCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCc-c-CcccccccccccccccccChhhHHHHHHHHHHHHH
Q 000134 700 SDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGA-V-DPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAF 777 (2096)
Q Consensus 700 ~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGa-l-Dp~r~~~~~~~~~~~~~~~~~f~~~ll~~~Lv~af 777 (2096)
.+.+..++..|..++.+.+. ..+..++..|+.|||.+.. + .+ .+. . .-...|+-. |.+..
T Consensus 773 --~~~~~~i~~~l~~~~~d~~~-~~~~~vr~~a~~~l~~l~~~~~g~-~~~--------~-~~~~~~~~~-----ll~~l 834 (861)
T 2bpt_A 773 --FPYVGTIFQFIAQVAEDPQL-YSEDATSRAAVGLIGDIAAMFPDG-SIK--------Q-FYGQDWVID-----YIKRT 834 (861)
T ss_dssp --GGGHHHHHHHHHHHHHCHHH-HTSHHHHHHHHHHHHHHHHHCTTS-TTG--------G-GTTCHHHHH-----HHHHH
T ss_pred --HHHHHHHHHHHHHHHcCccc-CCcHHHHHHHHHHHHHHHHHcCCc-hHH--------H-HHhcHHHHH-----HHHHH
Confidence 14677888888777765310 0025899999999998843 3 22 111 0 111133332 44555
Q ss_pred Hc--CCChhhHhHHHHHHHHHHHHc
Q 000134 778 RA--APDTIIQDSAALAIQELLKIA 800 (2096)
Q Consensus 778 ~s--~~dt~~Q~~~A~AiQElLk~~ 800 (2096)
.. ..+.+..+.+++|+.++=+..
T Consensus 835 ~~~~~~~~~~~~~~~wa~~~~~~~~ 859 (861)
T 2bpt_A 835 RSGQLFSQATKDTARWAREQQKRQL 859 (861)
T ss_dssp HHCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHh
Confidence 53 567788999999999886543
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.9e-06 Score=121.06 Aligned_cols=523 Identities=13% Similarity=0.166 Sum_probs=279.8
Q ss_pred hcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccccccccc
Q 000134 12 ALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKNACKLLL 91 (2096)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (2096)
+|.|...+||..|+..+--++-.-++..+..+...|...-.+....|+......||.++-..|.... + +
T Consensus 56 ~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~--~-----~---- 124 (1230)
T 1u6g_C 56 LLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS--G-----S---- 124 (1230)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC------------C----
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc--c-----c----
Confidence 4679999999999999988887666666677777776666677778888877777766544332200 0 0
Q ss_pred ccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccchhhHHHHH
Q 000134 92 NVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRV 171 (2096)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~ 171 (2096)
.+.. .-..++-+.+++.+-+..+.+++-+++.+
T Consensus 125 -------------------------~~~~----------------------~~~~~llp~L~~~l~~~~~~~~~~~al~~ 157 (1230)
T 1u6g_C 125 -------------------------ALAA----------------------NVCKKITGRLTSAIAKQEDVSVQLEALDI 157 (1230)
T ss_dssp -------------------------CTHH----------------------HHHHHHHHHHHHHHSCCSCHHHHHHHHHH
T ss_pred -------------------------chHH----------------------HHHHHHHHHHHHHHcCCCchHHHHHHHHH
Confidence 0000 00123445566666544567899999999
Q ss_pred HHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHhhh
Q 000134 172 IRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTA 251 (2096)
Q Consensus 172 l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (2096)
|..++......+. .-....+.++-..+.|++..||.++++.+..+.+.. . ...-..++..+...+..
T Consensus 158 l~~~~~~~~~~l~-~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~------~------~~~~~~~l~~l~~~L~~ 224 (1230)
T 1u6g_C 158 MADMLSRQGGLLV-NFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC------G------NIVFVDLIEHLLSELSK 224 (1230)
T ss_dssp HHHHHHHTCSSCT-TTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----------------CTTHHHHHHHHHHH
T ss_pred HHHHHHHhHhHHH-HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhc------C------HHHHHHHHHHHHHHhcc
Confidence 9999976543321 122445566666679999999999999999976211 0 00112345555555555
Q ss_pred cCChhHHHHHHHHHHHHHhhhccc-chhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhh
Q 000134 252 ADDPLILETLLESTAELMMAVDVH-SQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNE 330 (2096)
Q Consensus 252 ~~d~~i~eTll~~~~~i~~~~~~~-~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~ 330 (2096)
.+++.+..+.+.+++.|+.++... ...+.-.+=.++..+...++-+|..|..-+..+++..... +.++. +.
T Consensus 225 ~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~l----~~ 296 (1230)
T 1u6g_C 225 NDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE----VYPHV----ST 296 (1230)
T ss_dssp TCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC----CHHHH----HH
T ss_pred CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHH----HHHhH----HH
Confidence 555567777888889886643110 0111223344666777888999999999999888865332 11111 11
Q ss_pred hhHHHHHHhcCchH------------------------------------------HHHHHHHHHhCC------------
Q 000134 331 LFDYLSVRLASRPI------------------------------------------MVREFAEAAFGV------------ 356 (2096)
Q Consensus 331 l~~~~~~~l~~rp~------------------------------------------~~~~~~e~llg~------------ 356 (2096)
+.+.+.+.+...|. .+..+.. +...
T Consensus 297 li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~-l~~~~~~~~~~~~~~l 375 (1230)
T 1u6g_C 297 IINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDA-VVSTRHEMLPEFYKTV 375 (1230)
T ss_dssp HHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHH-HHTTCCTTHHHHHTTT
T ss_pred HHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHH-HHHhchhHHHHHHHHH
Confidence 11111111111110 0000100 1110
Q ss_pred -----------------------------------------------ChHHHHHhhcccccchhhhc-cccChh----HH
Q 000134 357 -----------------------------------------------ETEELVKKMIPAVLPKLVVS-QQDNDQ----AV 384 (2096)
Q Consensus 357 -----------------------------------------------~~~~fL~~~~~~~LP~LVl~-~~~~~~----~~ 384 (2096)
+..+.+....+.++|.+.-. +..+.. +.
T Consensus 376 ~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~ 455 (1230)
T 1u6g_C 376 SPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCF 455 (1230)
T ss_dssp HHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHH
Confidence 01122222223333322210 111111 12
Q ss_pred HHHHHHHHHcCCCchhHHhhhHHHHHHHHhcccc-HHHHHHHHHHHhhh---cCCC-hHHHHHHhhHHHHHHHHHhhcCC
Q 000134 385 NIINELAKCLNTDMVPLIVTWIPKVLAFALHQAD-ERRLLSALEFYCIQ---TGSD-NQEIFAAALPALLDELICFVDGG 459 (2096)
Q Consensus 385 ~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~-~~~~~~~l~~~~~~---~~~~-~~~~~~~~~~~~l~eLl~~~~~~ 459 (2096)
..+.++++.....+.+.+..-++.|+..|--... .+....++..+... .+.+ ....+...+|.++. .+.+.
T Consensus 456 ~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~----~l~d~ 531 (1230)
T 1u6g_C 456 NMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVA----CVGDP 531 (1230)
T ss_dssp HHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHH----HHTCS
T ss_pred HHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHH----HHccc
Confidence 3344444443322322222222222222211111 12222233322222 1111 22233333344332 23332
Q ss_pred CchhHhhhhcchhHHHHHHhhhccC-----CCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhcccc
Q 000134 460 DSDEINERLNRVPRVIRKVSTVLTG-----NEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHL 534 (2096)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v 534 (2096)
+... + ..+..++..+.+.+.. +..+..|+..=+=.++..+.. ...+...|..++.++|.|++.+|+.+
T Consensus 532 ~~~v---~-~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~---~d~~~~vr~~a~~~lg~L~~~~g~~~ 604 (1230)
T 1u6g_C 532 FYKI---T-SEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKA---ADIDQEVKERAISCMGQIICNLGDNL 604 (1230)
T ss_dssp SHHH---H-HHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSC---SSSCHHHHHHHHHHHHHHHHHTGGGC
T ss_pred chHH---H-HHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHHHHHhCchh
Confidence 2110 0 1122334443433322 234555554333333344421 22345678889999999999999999
Q ss_pred ccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccccCCCCchhhHHHHHHHHHHHH
Q 000134 535 TTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLV 614 (2096)
Q Consensus 535 ~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li 614 (2096)
....|+++..|...+..+.-+..++++........ .+.++.+++..++..+...+... ....+..+...+..++
T Consensus 605 ~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~---~~~~~~~~~~~i~~~L~~~l~~~---~~~~r~~a~~al~~l~ 678 (1230)
T 1u6g_C 605 GSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSP---LKIDLRPVLGEGVPILASFLRKN---QRALKLGTLSALDILI 678 (1230)
T ss_dssp CTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCS---SCCCCHHHHHHHHHHHHHHTTSC---CHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCc---cccchHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHH
Confidence 99999999999999988777777777777665532 23467888999999888877632 2346778888888888
Q ss_pred HHhH-----HHHHhhcccCCCC
Q 000134 615 LKNR-----AILKQHIHEFPLL 631 (2096)
Q Consensus 615 ~~n~-----~~L~~~i~~lp~L 631 (2096)
..+. +.+...+..+.++
T Consensus 679 ~~~~~~~~~~~v~~~l~~ll~l 700 (1230)
T 1u6g_C 679 KNYSDSLTAAMIDAVLDELPPL 700 (1230)
T ss_dssp HHCCTTCCHHHHHHHHTTCGGG
T ss_pred hcccccCCHHHHHHHHHHHHhh
Confidence 7763 4455555555444
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=3.3e-06 Score=115.82 Aligned_cols=544 Identities=12% Similarity=0.161 Sum_probs=296.9
Q ss_pred hhcccchhhhhhhhhhchhhhhhhcCcc---chHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCcccccccc-cccc
Q 000134 11 LALRDEFDEVRAEAVISLPVIVMWSGLG---VLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDW-DKNA 86 (2096)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 86 (2096)
-+++|+..+||..|+-.+--++-..+.. .+..+.+.|-.+..++...|++.....||.++=.++.. ..+ -.+-
T Consensus 181 ~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~---~~~~l~~l 257 (852)
T 4fdd_A 181 QFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDR---LLPHMHNI 257 (852)
T ss_dssp TTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHH---HGGGHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHH---HHHHHHHH
Confidence 4678899999999998886555432211 12344455555566777889998888888776544311 000 0111
Q ss_pred cccccccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhc---------
Q 000134 87 CKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLY--------- 157 (2096)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------- 157 (2096)
...+++.... ....+...--.||...|+.....+ . ..--...+-+.+++.+.
T Consensus 258 ~~~l~~~~~~-~~~~vr~~a~e~l~~l~~~~~~~~------~------------~~~~~~~l~p~ll~~l~~~e~d~~~~ 318 (852)
T 4fdd_A 258 VEYMLQRTQD-QDENVALEACEFWLTLAEQPICKD------V------------LVRHLPKLIPVLVNGMKYSDIDIILL 318 (852)
T ss_dssp HHHHHHHHTC-SSHHHHHHHHHHHHHHTTSTTHHH------H------------HTTTHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHccC-CcHHHHHHHHHHHHHHhcchhHHH------H------------HHHHHHHHHHHHHHHcCCcHhHHHHh
Confidence 2222222111 112233333445666665432111 0 01123344455555552
Q ss_pred -cc-----------CccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhh
Q 000134 158 -DE-----------SSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSS 225 (2096)
Q Consensus 158 -~~-----------~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~ 225 (2096)
++ .+..|+.+....|.++..+...++. . ..+..+..++.|++-.+|++++.++..+.+...
T Consensus 319 ~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~-~---~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~--- 391 (852)
T 4fdd_A 319 KGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELL-P---HILPLLKELLFHHEWVVKESGILVLGAIAEGCM--- 391 (852)
T ss_dssp HC------------CCCCHHHHHHHHHHHHHHHHGGGGH-H---HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH---
T ss_pred cCCcccccccccccccchHHHHHHHHHHHHHHhccHHHH-H---HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcch---
Confidence 11 3446788888888888877654432 2 244455556689999999999999999762111
Q ss_pred hccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhc--ccchhHHHHHHHHHHhhCCCCcchHHHHHH
Q 000134 226 LFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVD--VHSQHFLFLLILLVEQLDNPHVTVRMNASR 303 (2096)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~--~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~ 303 (2096)
.........++..+...+.+ .++.|..+...++|+++.... .....+.-.+-.|+..|..+++-||..|..
T Consensus 392 ------~~~~~~l~~~l~~l~~~l~d-~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~ 464 (852)
T 4fdd_A 392 ------QGMIPYLPELIPHLIQCLSD-KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACS 464 (852)
T ss_dssp ------HHHGGGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 11111224566666665543 568899999999999865331 123445555666889998899999999999
Q ss_pred HHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcC--chHH------HHHHHHHHhCCC--hHHHHHhhcccccchh
Q 000134 304 LIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLAS--RPIM------VREFAEAAFGVE--TEELVKKMIPAVLPKL 373 (2096)
Q Consensus 304 ~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~--rp~~------~~~~~e~llg~~--~~~fL~~~~~~~LP~L 373 (2096)
-|.++|+..... +.++...+ .+.+.+-+.. +... +..+++ ..|-. ..+++. .++|.|
T Consensus 465 aL~~l~~~~~~~----l~~~l~~l----l~~L~~~l~~~~~~~~~~~~~ai~~l~~-~~~~~~~~~~~~~----~l~p~l 531 (852)
T 4fdd_A 465 AFATLEEEACTE----LVPYLAYI----LDTLVFAFSKYQHKNLLILYDAIGTLAD-SVGHHLNKPEYIQ----MLMPPL 531 (852)
T ss_dssp HHHHHHHHHGGG----GGGGHHHH----HHHHHHHHHHCCHHHHHHHHHHHHHHHH-HHGGGGCCHHHHH----HHHHHH
T ss_pred HHHHHHHHhhHh----hHhHHHHH----HHHHHHHHHHhChHHHHHHHHHHHHHHH-HhhhhhccHHHHH----HHHHHH
Confidence 999999876432 33444333 3333333321 1111 222222 22211 133444 345555
Q ss_pred hh----ccccChh---HHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhcc----------------ccHHHHHH---HHH
Q 000134 374 VV----SQQDNDQ---AVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQ----------------ADERRLLS---ALE 427 (2096)
Q Consensus 374 Vl----~~~~~~~---~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~----------------~~~~~~~~---~l~ 427 (2096)
+- .+..+.. +.+.+..|++.++....+.+..-++.++..+-.. ++++.... .+.
T Consensus 532 ~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~ 611 (852)
T 4fdd_A 532 IQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLS 611 (852)
T ss_dssp HHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHH
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHH
Confidence 51 1111111 3466677888887766555444444433332110 12232222 222
Q ss_pred HHhhhcCCChHHHHHHhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhh
Q 000134 428 FYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKM 507 (2096)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l 507 (2096)
-+....+.+....+.+ +.++.-++-.+.+...+. |. .+...+..+++.. ...+..|+. .++..+...+
T Consensus 612 ~l~~~l~~~~~~~~~~--~~~~~~l~~~l~~~~~~v---r~-~a~~~l~~l~~~~--~~~~~~~l~----~~lp~l~~~l 679 (852)
T 4fdd_A 612 GLAEGLGGNIEQLVAR--SNILTLMYQCMQDKMPEV---RQ-SSFALLGDLTKAC--FQHVKPCIA----DFMPILGTNL 679 (852)
T ss_dssp HHHHHHGGGGHHHHHT--CCHHHHHHHHTTCSSHHH---HH-HHHHHHHHHHHHC--GGGTGGGHH----HHHHHHHHTC
T ss_pred HHHHHHhHhHHHHhcC--CcHHHHHHHHhCCCChhH---HH-HHHHHHHHHHHHh--hHHHHHHHH----HHHHHHHHHc
Confidence 2333333333333310 122221222233322221 11 1222333333221 223444443 3444444333
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCCCcchhhhH-HHHHHHHHhccCCCcchhhHHHHHHH
Q 000134 508 LHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLS-VLHFFIEQLSRVSPSSTKHVISQVFA 586 (2096)
Q Consensus 508 ~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~~L~~~~l~-~W~~fv~~L~~~~~~~l~~ll~~i~~ 586 (2096)
+.++.+.++.++.++|++.+.+|..+.++.+.|+..|..-|+.++.+..... ++..+- .|...+|+.+.|++++++.
T Consensus 680 -~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~ig-rl~~~~~~~~~~~l~~~~~ 757 (852)
T 4fdd_A 680 -NPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIG-RLGYVCPQEVAPMLQQFIR 757 (852)
T ss_dssp -CTTSHHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHH-HHHHHCHHHHGGGHHHHHH
T ss_pred -CccchHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHH-HHHHhCHHHhCccHHHHHH
Confidence 3445678889999999999999999999999999999998887766544443 333333 3333467788899999888
Q ss_pred HhhhccccCCCCchhhHHHHHHHHHHHHHHhHH
Q 000134 587 ALIPFLERDKDNPSVLLNKVVKILEDLVLKNRA 619 (2096)
Q Consensus 587 ~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~ 619 (2096)
.+...+..-.+. ..+..|..-|-.||..|..
T Consensus 758 ~~~~~l~~~~d~--~e~~~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 758 PWCTSLRNIRDN--EEKDSAFRGICTMISVNPS 788 (852)
T ss_dssp HHHHHHHTSCSS--HHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHhcccccc--HHHHHHHHHHHHHHHhChH
Confidence 876666432222 2367788888888888775
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.6e-05 Score=113.45 Aligned_cols=694 Identities=13% Similarity=0.167 Sum_probs=331.3
Q ss_pred HHHhhhcccchhhhhhhhhhchhhhhhhcCccchHHHHHHH-hhhchhhhhhhhhhccchhhhhhhccCccccccccccc
Q 000134 7 EILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRL-ESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKN 85 (2096)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (2096)
..+--.|.|+...||..|+.++..++...+...+..+...| ..+.++....+++.....+|.++-..|.. ....-..
T Consensus 178 ~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~l~~ 255 (1230)
T 1u6g_C 178 TCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHR--IGEYLEK 255 (1230)
T ss_dssp HHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGG--GTTSCTT
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHH--HHHHHHH
Confidence 34444678888899999999999999888765544422222 23332222356666666666665444421 1111111
Q ss_pred cccccccccccccc---ccHHhhhhcccccccCCccccc-ccccccccC----CCccc---ccc----cc---cCCChhh
Q 000134 86 ACKLLLNVEDDILS---QTVDYLLENFWCSKCDTNVVHN-QELSSKIVN----PSDVQ---SKD----LN---FHSDFSF 147 (2096)
Q Consensus 86 ~~~~~~~~~~~~~~---~~~~~~~~~~~c~~c~~~~~~~-~~~~~~~~~----~~~~~---~~~----~~---~~~~~~~ 147 (2096)
-...++..-+...+ ......+ +++|..|...+... .+.-..++. -+... +.+ .+ .+-+...
T Consensus 256 l~~~ll~~l~d~~~~vR~~a~~~l-~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~ 334 (1230)
T 1u6g_C 256 IIPLVVKFCNVDDDELREYCIQAF-ESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQG 334 (1230)
T ss_dssp HHHHHHHHHSSCCTTTHHHHHHHH-HHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------------------
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHH-HHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhh
Confidence 22222222111111 1111122 34455565432110 000000000 00000 000 00 0000000
Q ss_pred HHHHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhc
Q 000134 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLF 227 (2096)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~ 227 (2096)
...-| . .-+..+.+|+-+....|..+..... +........-+..+...+.|++..||.++..++..++.......-.
T Consensus 335 ~~~~~-~-~~~d~~~~vR~~A~~~l~~l~~~~~-~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~ 411 (1230)
T 1u6g_C 335 SDDEY-S-DDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSW 411 (1230)
T ss_dssp ------------CTTHHHHHHHHHHHHHHTTCC-TTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC---
T ss_pred ccccc-c-cccccCHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhcccccc
Confidence 00000 0 0123456788899999999887543 2111111111233333447899999999999998877432110000
Q ss_pred cCcccc-----c-----chhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccc---hhHHHHHHHHHHhhCCCC
Q 000134 228 LDENAS-----S-----RSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHS---QHFLFLLILLVEQLDNPH 294 (2096)
Q Consensus 228 ~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~---e~~~~~l~~Li~~L~~~n 294 (2096)
.++... + ......++..+.+.+. .+++.+++.++..+++++... .+ .-+...+-.++..|..++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~-~~~~~vr~~~~~~L~~l~~~~--~~~l~~~l~~ll~~l~~~L~d~~ 488 (1230)
T 1u6g_C 412 LCDPDAMEQGETPLTMLQSQVPNIVKALHKQMK-EKSVKTRQCCFNMLTELVNVL--PGALTQHIPVLVPGIIFSLNDKS 488 (1230)
T ss_dssp ---------CCCHHHHHHHHTTHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHS--TTTTGGGHHHHHHHHHHHTTCSS
T ss_pred ccCccccccccchHHHHHHHhhHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHc--hhhhHHHHHHHHHHHHHHHcCCC
Confidence 000000 0 0111223333444343 456779999999999986642 22 233445556788888887
Q ss_pred c--chHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcCchH--------HHHHHHHHHhCC-------C
Q 000134 295 V--TVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASRPI--------MVREFAEAAFGV-------E 357 (2096)
Q Consensus 295 ~--~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~rp~--------~~~~~~e~llg~-------~ 357 (2096)
+ -++..|...+..+++.+.. +.+.++. +.+.+.+.+.+..+.. .+.++++ .+|- .
T Consensus 489 ~~~~v~~~a~~~l~~~~~~~~~---~~~~~~l----~~llp~L~~~l~d~~~~v~~~al~~l~~l~~-~~~~~~~~~~~~ 560 (1230)
T 1u6g_C 489 SSSNLKIDALSCLYVILCNHSP---QVFHPHV----QALVPPVVACVGDPFYKITSEALLVTQQLVK-VIRPLDQPSSFD 560 (1230)
T ss_dssp SCHHHHHHHHHHHHHHHHSSCG---GGGHHHH----TTTHHHHHHHHTCSSHHHHHHHHHHHHHHHH-HHCCSSSCCCCC
T ss_pred CcchHHHHHHHHHHHHHHhCCH---HHHHhHH----HHHHHHHHHHHcccchHHHHHHHHHHHHHHH-HhcCcccccccc
Confidence 5 7888888888888765533 2223333 4455666665554433 2344443 4454 4
Q ss_pred hHHHHHhhcccccchhhhccccChh----HHHHHHHHHHHcCCCchhHHhhhHHHHHHHHh---ccc-cHHHHHHHHHHH
Q 000134 358 TEELVKKMIPAVLPKLVVSQQDNDQ----AVNIINELAKCLNTDMVPLIVTWIPKVLAFAL---HQA-DERRLLSALEFY 429 (2096)
Q Consensus 358 ~~~fL~~~~~~~LP~LVl~~~~~~~----~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll---~~~-~~~~~~~~l~~~ 429 (2096)
...++..+.+..+++|-.. ..+.. +...+..++...+..+.+ .++.++..|. ..+ .+.....++..+
T Consensus 561 ~~~~~~~ll~~ll~~l~~~-d~~~~vr~~a~~~lg~L~~~~g~~~~~----~~~~~l~~L~~~l~~e~~r~~~~~al~~i 635 (1230)
T 1u6g_C 561 ATPYIKDLFTCTIKRLKAA-DIDQEVKERAISCMGQIICNLGDNLGS----DLPNTLQIFLERLKNEITRLTTVKALTLI 635 (1230)
T ss_dssp CHHHHHHHHHHHHHHHSCS-SSCHHHHHHHHHHHHHHHHHTGGGCCT----HHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhCchhhh----hHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 4566666666666665311 12222 235677777777766644 3455554443 222 234455666655
Q ss_pred hhhc-CCChHHHHHHhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhc
Q 000134 430 CIQT-GSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKML 508 (2096)
Q Consensus 430 ~~~~-~~~~~~~~~~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~ 508 (2096)
.... +.+...++...+|.+.. .+...+. .. |. ....++..+..... .... .+++..++..+- .++
T Consensus 636 ~~~~~~~~~~~~~~~i~~~L~~----~l~~~~~--~~-r~-~a~~al~~l~~~~~-~~~~----~~~v~~~l~~ll-~ll 701 (1230)
T 1u6g_C 636 AGSPLKIDLRPVLGEGVPILAS----FLRKNQR--AL-KL-GTLSALDILIKNYS-DSLT----AAMIDAVLDELP-PLI 701 (1230)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHH----HTTSCCH--HH-HH-HHHHHHHHHHHHCC-TTCC----HHHHHHHHTTCG-GGS
T ss_pred HhCccccchHHHHHHHHHHHHH----HHHhCCH--HH-HH-HHHHHHHHHHhccc-ccCC----HHHHHHHHHHHH-hhc
Confidence 4322 23455556655555443 3333322 11 11 23344444443322 1112 234444443321 223
Q ss_pred CCCChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCC--cchhhHHHHHHH
Q 000134 509 HAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSP--SSTKHVISQVFA 586 (2096)
Q Consensus 509 ~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~~~--~~l~~ll~~i~~ 586 (2096)
+..|..++..++..+..|++..++.+....+.++..+...+..+.++..++.+-..+++.+...++ ..+.+++..+
T Consensus 702 ~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l-- 779 (1230)
T 1u6g_C 702 SESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLRML-- 779 (1230)
T ss_dssp CTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHH--
T ss_pred CcchHHHHHHHHHHHHHHHHhCchhHHHhHHhHHHHHHHHHcCcccchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH--
Confidence 446777888899999999987776554445555544444454444555555554445555433222 2344444433
Q ss_pred HhhhccccCCC--CchhhHHHHHHHHHHHHHHhH----HHHHhhcccCCCCCChhhhHHHH-HHHHHh--cCCCC-HHHH
Q 000134 587 ALIPFLERDKD--NPSVLLNKVVKILEDLVLKNR----AILKQHIHEFPLLPSIAALTEVN-KAIQEA--RGPMT-LKDQ 656 (2096)
Q Consensus 587 ~lip~~~~~~~--~~~~~~~~~~~il~~Li~~n~----~~L~~~i~~lp~Lp~ip~l~~v~-~~l~~~--r~~~~-l~~~ 656 (2096)
..-+..... ........+...+..++.... ..+..++..+-.-...+...... ..+.+. +..+. ..+.
T Consensus 780 --~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~l 857 (1230)
T 1u6g_C 780 --TGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLEL 857 (1230)
T ss_dssp --STTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSCCCSCTHH
T ss_pred --hccccCCCCccccchhhHHHHHHHHHHHHhcchhhHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhcccCCCcccccH
Confidence 222211000 011123445566666665432 33444444332100111111111 111221 11121 2345
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHH----H------------------HHHhccCCC-CchhHHHHHHHHH
Q 000134 657 LLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDV----T------------------ALINGEACS-DLDVLSTLISSLL 713 (2096)
Q Consensus 657 l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l----~------------------~~~~~e~~~-~~~vi~~Lv~sLL 713 (2096)
+..|.+.+++.+..||..|...|..+...+-+.+ . ..+...... -.+.+.++...|+
T Consensus 858 ~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~~~~~lp~ll~~l~~~~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~ 937 (1230)
T 1u6g_C 858 KSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLL 937 (1230)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHhHHHhccCHHHHHHHHHHHHhccchhhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHH
Confidence 6778889999999999988777776554442211 1 111111111 1245667777777
Q ss_pred HHhhhhccccchhhHHHHHHHhhcccCccCcc
Q 000134 714 RGCAEESRTVVGQKLKLVCADCLGALGAVDPA 745 (2096)
Q Consensus 714 ~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~ 745 (2096)
+.+.+. ++.++..+|+|||.|...||.
T Consensus 938 ~~~~~~-----~~~~r~~~a~~lg~l~~~~~~ 964 (1230)
T 1u6g_C 938 KHCECA-----EEGTRNVVAECLGKLTLIDPE 964 (1230)
T ss_dssp TCCCCS-----STTHHHHHHHHHHHHHHSSGG
T ss_pred HHhcCc-----chhhHHHHHHHHhhhhccChH
Confidence 665432 246888999999999999883
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=2.1e-05 Score=96.55 Aligned_cols=372 Identities=12% Similarity=0.093 Sum_probs=213.9
Q ss_pred HHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----hhH
Q 000134 1046 LARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQD 1119 (2096)
Q Consensus 1046 LA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l~~ 1119 (2096)
+|...++.|.|..|+.+++..++..+. ....+..|..+|.+.++.|...-.... ...+. ...
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~ 72 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPD------------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSN 72 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHH
Confidence 578889999999999999987765321 124566888999999999988777542 22232 233
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCCh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~W 1199 (2096)
....+...|++++|..+|+++++..|++.+...++-.|+...|+++......+......|+....+. .-..+...+|+|
T Consensus 73 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~l~~~~~~~g~~ 151 (388)
T 1w3b_A 73 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRS-DLGNLLKALGRL 151 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHH-HHHHHHHTTSCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH-HHHHHHHHccCH
Confidence 5567889999999999999999999999998899999999999999888777766655565433222 223456678999
Q ss_pred hhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhhh
Q 000134 1200 DLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHL 1279 (2096)
Q Consensus 1200 d~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH~ 1279 (2096)
+.-.++....-.. .+........+|.++ ...++..+..+..+++.. +.+...+.|...-.......
T Consensus 152 ~~A~~~~~~al~~------~p~~~~~~~~l~~~~--~~~g~~~~A~~~~~~al~-----~~p~~~~~~~~lg~~~~~~~- 217 (388)
T 1w3b_A 152 EEAKACYLKAIET------QPNFAVAWSNLGCVF--NAQGEIWLAIHHFEKAVT-----LDPNFLDAYINLGNVLKEAR- 217 (388)
T ss_dssp HHHHHHHHHHHHH------CTTCHHHHHHHHHHH--HTTTCHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHh------CCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHh-----cCCCcHHHHHHHHHHHHHcC-
Confidence 8776665443211 011122333455443 334444433333332221 11111111111111111111
Q ss_pred hhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHH
Q 000134 1280 LQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLC 1359 (2096)
Q Consensus 1280 L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklA 1359 (2096)
+.+++........ . ..+.... .|...-......-+..+-+-.+++++ . ..+.....|...+.+.
T Consensus 218 --~~~~A~~~~~~al--~--~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~al-~---~~p~~~~~~~~l~~~~ 281 (388)
T 1w3b_A 218 --IFDRAVAAYLRAL--S--LSPNHAV------VHGNLACVYYEQGLIDLAIDTYRRAI-E---LQPHFPDAYCNLANAL 281 (388)
T ss_dssp --CTTHHHHHHHHHH--H--HCTTCHH------HHHHHHHHHHHTTCHHHHHHHHHHHH-H---TCSSCHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHH--h--hCcCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHH-h---hCCCCHHHHHHHHHHH
Confidence 1111111110000 0 0000000 01110000000001111122222221 1 1223456788888888
Q ss_pred HHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCc
Q 000134 1360 RLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPV 1437 (2096)
Q Consensus 1360 RKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1437 (2096)
.+.|+++.|...+.++....+ +.+....+.++...|+..+|+..++++++..|
T Consensus 282 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------------------------- 336 (388)
T 1w3b_A 282 KEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP------------------------- 336 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-------------------------
T ss_pred HHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-------------------------
Confidence 888888888888887776643 34566777888888888888888887764211
Q ss_pred ccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000134 1438 LSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2096)
Q Consensus 1438 ~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d 1498 (2096)
..+.++..+|.-+...|+ .++.++.|+++++++|....+|+.+|..+.
T Consensus 337 -----------~~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 337 -----------EFAAAHSNLASVLQQQGK--LQEALMHYKEAIRISPTFADAYSNMGNTLK 384 (388)
T ss_dssp -----------TCHHHHHHHHHHHHTTTC--CHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred -----------CcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHHHhHHHHHH
Confidence 012345555555544443 677888888888888888888888887553
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.69 E-value=3.8e-05 Score=104.94 Aligned_cols=472 Identities=12% Similarity=0.088 Sum_probs=257.7
Q ss_pred hhHHHHHHHhhcc------cCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh
Q 000134 146 SFLLNIYFEFLYD------ESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ 219 (2096)
Q Consensus 146 ~~~~~~~~~~l~~------~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~ 219 (2096)
.++-+.+++.|.. +.+.+++.++...|..+..+...++ +. ..+..+...+.|++..+|.+++..+..+.+
T Consensus 320 ~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~-~~---~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~ 395 (876)
T 1qgr_A 320 QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI-VP---HVLPFIKEHIKNPDWRYRDAAVMAFGCILE 395 (876)
T ss_dssp HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGG-HH---HHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhh-HH---HHHHHHHHHccCCChHHHHHHHHHHHHHHc
Confidence 3445556666643 2345788888888888877765433 22 233444555689999999999999988651
Q ss_pred hhhhhhhccCcc-cccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcc---cchhHHHHHHHHHHhhCCCCc
Q 000134 220 DTVLSSLFLDEN-ASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDV---HSQHFLFLLILLVEQLDNPHV 295 (2096)
Q Consensus 220 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~---~~e~~~~~l~~Li~~L~~~n~ 295 (2096)
+.. ..-......++..+...+.. .++.|+++.+.++++++..... ..+.+...+-.|+..|.++ +
T Consensus 396 ---------~~~~~~~~~~~~~~l~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~ 464 (876)
T 1qgr_A 396 ---------GPEPSQLKPLVIQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-P 464 (876)
T ss_dssp ---------SSCHHHHHHHHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-H
T ss_pred ---------CCCHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-H
Confidence 110 00001113355555555543 4578999999999999654322 2355666666788888775 8
Q ss_pred chHHHHHHHHHHHhhhhc-------cc---ccccccchhhhhhhhhhHHHHHHhcCc----hH----H---HHHHHHHHh
Q 000134 296 TVRMNASRLIRKSCFFHL-------KG---GCELLVSKAVLICNELFDYLSVRLASR----PI----M---VREFAEAAF 354 (2096)
Q Consensus 296 ~v~~~A~~~i~~l~~~~~-------~~---~~~l~~~~~~~~~~~l~~~~~~~l~~r----p~----~---~~~~~e~ll 354 (2096)
-|+..|..-|..++.... +. ..+.+.++.. .+.+.+.+-+... +. . +..++. ..
T Consensus 465 ~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~----~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~-~~ 539 (876)
T 1qgr_A 465 RVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFE----LIVQKLLETTDRPDGHQNNLRSSAYESLMEIVK-NS 539 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHH----HHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHH-TC
T ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHH----HHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHH-HC
Confidence 899999999988887653 10 1123444543 3344444444321 11 1 222332 34
Q ss_pred CCChHHHHHhhcccccchhhhc--------cccChh--------HHHHHHHHHHHcC-CCchhHHhhhHHHHHHHHh---
Q 000134 355 GVETEELVKKMIPAVLPKLVVS--------QQDNDQ--------AVNIINELAKCLN-TDMVPLIVTWIPKVLAFAL--- 414 (2096)
Q Consensus 355 g~~~~~fL~~~~~~~LP~LVl~--------~~~~~~--------~~~~i~~ia~~~~-~~~~~l~~~~~~~Ila~ll--- 414 (2096)
|-....++....+.++..+-.. ...|.. +...+..+++.++ ..+.+ +++.|+..++
T Consensus 540 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~----~~~~l~~~l~~~l 615 (876)
T 1qgr_A 540 AKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQ----ISDVVMASLLRMF 615 (876)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHT----THHHHHHHHHHHC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhH----HHHHHHHHHHHHH
Confidence 4444445555444444333221 111100 1234455555444 33433 4444444433
Q ss_pred -ccc----cHHHHHHHHHHHhhhcCCChHHHHHHhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChh
Q 000134 415 -HQA----DERRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLP 489 (2096)
Q Consensus 415 -~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (2096)
... ..+.+..++..+....+......+...+|.++ ..++..+..+. +. .....+..+.+... +.+
T Consensus 616 ~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~----~~l~~~~~~~v--r~-~a~~~l~~l~~~~~--~~~- 685 (876)
T 1qgr_A 616 QSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLG----IGLKNYAEYQV--CL-AAVGLVGDLCRALQ--SNI- 685 (876)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHH----HHHHHCTTHHH--HH-HHHHHHHHHHHHHG--GGG-
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHcCcchHHH--HH-HHHHHHHHHHHHHH--Hhh-
Confidence 221 13445555555544433333222333333332 23333212221 11 12233333333221 223
Q ss_pred hhhHHHHHHHHHHhhhhhcCC-CChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCC-------------Ccc
Q 000134 490 GFLRNHFVGLLNSIDRKMLHA-EDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKE-------------SLQ 555 (2096)
Q Consensus 490 ~fl~~~~LGil~~~~~~l~~~-~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~-------------~L~ 555 (2096)
.+++-.++..+-..+.+. .+...|..++.++|.+++.+|+....++|.|+-.|..++..+ .++
T Consensus 686 ---~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r 762 (876)
T 1qgr_A 686 ---IPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELR 762 (876)
T ss_dssp ---HHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHH
T ss_pred ---hhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHH
Confidence 344444444443333232 234577889999999999999999899999999999888633 577
Q ss_pred hhhhHHHHHHHHHhccCC------CcchhhHHHHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHH-HHHhhcccC
Q 000134 556 CEGLSVLHFFIEQLSRVS------PSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRA-ILKQHIHEF 628 (2096)
Q Consensus 556 ~~~l~~W~~fv~~L~~~~------~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~-~L~~~i~~l 628 (2096)
..++.+|..+++.+.... ...+.+++..++..+....+.. .....++..|...|..|+..-+. .+..++.
T Consensus 763 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-- 839 (876)
T 1qgr_A 763 ESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDE-DHTDGVVACAAGLIGDLCTAFGKDVLKLVEA-- 839 (876)
T ss_dssp HHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCS-CCCHHHHHHHHHHHHHHHHHHCTHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHHhCcHHHHHHHh--
Confidence 788999999998876421 1467888888876665544321 10235677888888877654322 2221110
Q ss_pred CCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHh-hccCCChhHHHHHHHHHHHH
Q 000134 629 PLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVD-GLNHENLNVRYMVVCELSKL 682 (2096)
Q Consensus 629 p~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~-~l~~en~~Vr~~aL~eL~~~ 682 (2096)
...+..+++ .+.+.+..||..|...+..+
T Consensus 840 -------------------------~~~i~~ll~~~l~~~~~~~r~~a~~a~~~~ 869 (876)
T 1qgr_A 840 -------------------------RPMIHELLTEGRRSKTNKAKTLARWATKEL 869 (876)
T ss_dssp -------------------------SHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred -------------------------cHHHHHHHHHHhhcCCHhHHHHHHHHHHHH
Confidence 012334444 55677888887776666554
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-05 Score=109.95 Aligned_cols=436 Identities=14% Similarity=0.109 Sum_probs=251.0
Q ss_pred hhHHHHHHHhhcccC------ccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh
Q 000134 146 SFLLNIYFEFLYDES------SEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ 219 (2096)
Q Consensus 146 ~~~~~~~~~~l~~~~------~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~ 219 (2096)
..+-+.+++.|-+.. +..++.++...|..+..+...++. ......+...+.+++-.+|++++..+..+.+
T Consensus 323 ~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~----~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~ 398 (861)
T 2bpt_A 323 KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL----EPVLEFVEQNITADNWRNREAAVMAFGSIMD 398 (861)
T ss_dssp HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH----HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHH----HHHHHHHHHHcCCCChhHHHHHHHHHHHHHc
Confidence 345555666665422 235778888888888877664432 2344455556689999999999999888651
Q ss_pred hhhhhhhccCcc-cccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcc---cchhHHHHHHHHHHhhCCCCc
Q 000134 220 DTVLSSLFLDEN-ASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDV---HSQHFLFLLILLVEQLDNPHV 295 (2096)
Q Consensus 220 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~---~~e~~~~~l~~Li~~L~~~n~ 295 (2096)
+.. .........++..+...+.. .++.+.++.+.++|+++..... ..+.+...+-.|+..|..+ +
T Consensus 399 ---------~~~~~~~~~~l~~il~~l~~~l~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~ 467 (861)
T 2bpt_A 399 ---------GPDKVQRTYYVHQALPSILNLMND-QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-P 467 (861)
T ss_dssp ---------SSCHHHHHHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-H
T ss_pred ---------CCCHHHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-h
Confidence 110 00011113456666665544 4788999999999998654321 2445656666688888775 8
Q ss_pred chHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcC---chHH-------HHHHHHHHhCCChHHHHHhh
Q 000134 296 TVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLAS---RPIM-------VREFAEAAFGVETEELVKKM 365 (2096)
Q Consensus 296 ~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~---rp~~-------~~~~~e~llg~~~~~fL~~~ 365 (2096)
-++..|..-+.++++.......+.+.++. +.+.+.+.+.+.+ .+.+ +..+++ ..|-....++..+
T Consensus 468 ~v~~~a~~al~~l~~~~~~~~~~~l~~~~----~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~-~~~~~~~~~~~~l 542 (861)
T 2bpt_A 468 KVATNCSWTIINLVEQLAEATPSPIYNFY----PALVDGLIGAANRIDNEFNARASAFSALTTMVE-YATDTVAETSASI 542 (861)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSCGGGGGH----HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHH-HCCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccchhhHHHH----HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHH-HcchhhHHHHHHH
Confidence 89999999998888765310012233444 3344555555542 1332 122222 2333333344443
Q ss_pred cccccchhhhc--------c----ccC----hhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhcc---ccHHHHHHHH
Q 000134 366 IPAVLPKLVVS--------Q----QDN----DQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQ---ADERRLLSAL 426 (2096)
Q Consensus 366 ~~~~LP~LVl~--------~----~~~----~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~---~~~~~~~~~l 426 (2096)
.+..+..|--. . ... ..+..++..|++..+..+.+.+..-++.++..+=.. ..++.+..++
T Consensus 543 ~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l 622 (861)
T 2bpt_A 543 STFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAI 622 (861)
T ss_dssp HHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHH
Confidence 33333333211 0 000 023466777777777766665544444444433222 1234455556
Q ss_pred HHHhhhcCCChHHHHHHhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhh
Q 000134 427 EFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRK 506 (2096)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~ 506 (2096)
..+....+.+....+...+|.++. .+...+.+ .+. .+...+..+.+.+. +. +.+++-.++..+-..
T Consensus 623 ~~l~~~~~~~~~~~l~~i~~~l~~----~l~~~~~~--vr~--~a~~~l~~l~~~~~--~~----~~~~~~~l~~~l~~~ 688 (861)
T 2bpt_A 623 SALAASLGKGFEKYLETFSPYLLK----ALNQVDSP--VSI--TAVGFIADISNSLE--ED----FRRYSDAMMNVLAQM 688 (861)
T ss_dssp HHHHHHHGGGGHHHHHHHHHHHHH----HHHCTTSH--HHH--HHHHHHHHHHHHTG--GG----GHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH----HhccccHH--HHH--HHHHHHHHHHHHhc--hh----ccchHHHHHHHHHHH
Confidence 555544444444444444444442 23332222 111 12333433343321 23 344444444444333
Q ss_pred hcCCC-ChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCC-------------CcchhhhHHHHHHHHHhccC
Q 000134 507 MLHAE-DLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKE-------------SLQCEGLSVLHFFIEQLSRV 572 (2096)
Q Consensus 507 l~~~~-~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~-------------~L~~~~l~~W~~fv~~L~~~ 572 (2096)
+.+++ +...|..++.+++.+++.+|+.+.++.++|+-.|..+++.. .++..++++|..++..+.+.
T Consensus 689 l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~ 768 (861)
T 2bpt_A 689 ISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK 768 (861)
T ss_dssp HHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 33332 35678899999999999999999999999999998888632 36788999999999988642
Q ss_pred CCcchhhHHHHHHHHhhhccccCC-CCchhhHHHHHHHHHHHHHH
Q 000134 573 SPSSTKHVISQVFAALIPFLERDK-DNPSVLLNKVVKILEDLVLK 616 (2096)
Q Consensus 573 ~~~~l~~ll~~i~~~lip~~~~~~-~~~~~~~~~~~~il~~Li~~ 616 (2096)
+..+.+++..++..+........ +....++..|...+..|...
T Consensus 769 -~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~ 812 (861)
T 2bpt_A 769 -PEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAM 812 (861)
T ss_dssp -HHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHH
Confidence 45688888888888877764210 00234677888888877554
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=98.67 E-value=0.00012 Score=99.96 Aligned_cols=591 Identities=12% Similarity=0.096 Sum_probs=302.9
Q ss_pred ChhhHHHHHHHhhccc-CccchhhHHHHHHHHHHccCCchhhhhh-hhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhh-
Q 000134 144 DFSFLLNIYFEFLYDE-SSEEVQLSCVRVIRRILVHGTRDVLLKT-RSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQD- 220 (2096)
Q Consensus 144 ~~~~~~~~~~~~l~~~-~~~~v~~~~~~~l~~il~h~~~~~~~~~-~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~- 220 (2096)
.+..+-+.+.+.|-++ ++.+|+.+++.+|..++.+...+..... +...+..+..++.+++..||.+++..+..+++.
T Consensus 169 ~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~ 248 (876)
T 1qgr_A 169 KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248 (876)
T ss_dssp GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 3556666677777665 4789999999999999877443321111 111233334445788899999998888776521
Q ss_pred ----------hhhhhhccC---cccccchhh----------------------------------------HHHHHHHHH
Q 000134 221 ----------TVLSSLFLD---ENASSRSNE----------------------------------------LKLLDVIKL 247 (2096)
Q Consensus 221 ----------~~~~~~~~~---~~~~~~~~~----------------------------------------~~~~~~~~~ 247 (2096)
.++..++.. .+...+..- ..++..+..
T Consensus 249 ~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~ 328 (876)
T 1qgr_A 249 YQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ 328 (876)
T ss_dssp GGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHH
Confidence 233222221 110100000 111122222
Q ss_pred Hhhh------cCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhccccccccc
Q 000134 248 AFTA------ADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLV 321 (2096)
Q Consensus 248 ~~~~------~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~ 321 (2096)
.+.. -++..+......+++.+.... +.+++...+=.+...|.+++.-+|..|..-+-.++..... +.+.
T Consensus 329 ~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~--~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~---~~~~ 403 (876)
T 1qgr_A 329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCC--EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP---SQLK 403 (876)
T ss_dssp HTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH--GGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH---HHHH
T ss_pred HhhcccccccccccHHHHHHHHHHHHHHHHC--cHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCH---HHHH
Confidence 2221 123557777777777774433 4556655555677888899999999999999888754321 0111
Q ss_pred chhhhhhhhhhHHHHHHhcCchHHHHHHHHHHhCCChHHHHHhh---------cccccchhhhccccCh----hHHHHHH
Q 000134 322 SKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKM---------IPAVLPKLVVSQQDND----QAVNIIN 388 (2096)
Q Consensus 322 ~~~~~~~~~l~~~~~~~l~~rp~~~~~~~e~llg~~~~~fL~~~---------~~~~LP~LVl~~~~~~----~~~~~i~ 388 (2096)
++. +.+.+.+++.|...-..++.-|...+| .|.... .+.++|.|+-.-+.+. .+...|.
T Consensus 404 ~~~----~~~l~~l~~~l~d~~~~vr~~a~~~l~----~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~~al~ 475 (876)
T 1qgr_A 404 PLV----IQAMPTLIELMKDPSVVVRDTAAWTVG----RICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFS 475 (876)
T ss_dssp HHH----HHHHHHHHHHHTCSSHHHHHHHHHHHH----HHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHhCCCCHHHHHHHHHHHH----HHHHhCchhcccHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 222 445566666665433333433322222 222211 1223333332211111 1234555
Q ss_pred HHHHHcC-------CC---chhHHhhhHHHHHHHHhc---cc---c---HHHHHHHHHHHhhhcCCChHHHHHHhhHHHH
Q 000134 389 ELAKCLN-------TD---MVPLIVTWIPKVLAFALH---QA---D---ERRLLSALEFYCIQTGSDNQEIFAAALPALL 449 (2096)
Q Consensus 389 ~ia~~~~-------~~---~~~l~~~~~~~Ila~ll~---~~---~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 449 (2096)
.++...+ .. -...+..+++.|+..|+. .. . +..+.++|..+....+.+....+...+|.++
T Consensus 476 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~ 555 (876)
T 1qgr_A 476 SLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIM 555 (876)
T ss_dssp HHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHH
T ss_pred HHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHH
Confidence 5555433 00 011223355555555542 11 1 2346677776666666666666666666666
Q ss_pred HHHHHhh--cC---CCchhH--hhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCC-hHHHHHHHH
Q 000134 450 DELICFV--DG---GDSDEI--NERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAED-LSLQKQALK 521 (2096)
Q Consensus 450 ~eLl~~~--~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~-~~~k~~~l~ 521 (2096)
..+--.+ .. ++.|.. ......+...+..+.+.+ |.+.+..|+. .|+..+-..+.+..+ ...+..++.
T Consensus 556 ~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~-~~~~~~~~~~----~l~~~l~~~l~~~~~~~~v~~~a~~ 630 (876)
T 1qgr_A 556 ERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKV-QHQDALQISD----VVMASLLRMFQSTAGSGGVQEDALM 630 (876)
T ss_dssp HHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTS-CHHHHHTTHH----HHHHHHHHHC-----CCHHHHHHHH
T ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHh-ChhhhhHHHH----HHHHHHHHHHHhccCCCCccHHHHH
Confidence 4332111 00 122210 000011223333333211 1123444442 233222221212111 245778999
Q ss_pred HHHHHHHHhccccccchhhHHHHHHHHhc---CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccccCCCC
Q 000134 522 RIEILIEMIGSHLTTYVPKILVLLMHAIN---KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDN 598 (2096)
Q Consensus 522 sl~~li~l~g~~v~~~~pqI~a~L~~aL~---~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~ 598 (2096)
.++.+++-+|....++.++++-.|...|. .++++..++.+...+++.+. ..+.+++..++..++..+.... .
T Consensus 631 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~----~~~~~~~~~i~~~l~~~l~~~~-~ 705 (876)
T 1qgr_A 631 AVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ----SNIIPFCDEVMQLLLENLGNEN-V 705 (876)
T ss_dssp HHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG----GGGHHHHHHHHHHHHHHHTCTT-S
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHH----HhhhhhHHHHHHHHHHHhCCcc-c
Confidence 99999999999888888888888887774 45678889999999998875 4688899999999998886421 1
Q ss_pred chhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHH-hcCCCCH-HHHHHHHHhhccCCChhHHHHHH
Q 000134 599 PSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQE-ARGPMTL-KDQLLAAVDGLNHENLNVRYMVV 676 (2096)
Q Consensus 599 ~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~-~r~~~~l-~~~l~~~~~~l~~en~~Vr~~aL 676 (2096)
....+..+...+..+....+ ..+ .|.+|.+- ..+.. .....+. .+....+ ...+|..++
T Consensus 706 ~~~~~~~~~~~l~~i~~~~g----~~~-----~~~l~~~~---~~l~~~~~~~~~~~d~~~~~~-------~~~~r~~~~ 766 (876)
T 1qgr_A 706 HRSVKPQILSVFGDIALAIG----GEF-----KKYLEVVL---NTLQQASQAQVDKSDYDMVDY-------LNELRESCL 766 (876)
T ss_dssp CGGGHHHHHHHHHHHHHHHG----GGG-----GGGHHHHH---HHHHHHHTCCCCTTCHHHHHH-------HHHHHHHHH
T ss_pred cHHhhHHHHHHHHHHHHHhc----hhH-----HHHHHHHH---HHHHHHHhccCCCCChHHHHH-------HHHHHHHHH
Confidence 12346677777777755432 222 12223221 11211 1111100 0000111 113555555
Q ss_pred HHHHHHHhhcHHHHHHHHh--cc-CCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCccCcc-ccccccc
Q 000134 677 CELSKLLKLKSEDVTALIN--GE-ACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPA-KVKGFSC 752 (2096)
Q Consensus 677 ~eL~~~L~~~~~~l~~~~~--~e-~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~-r~~~~~~ 752 (2096)
..+...+..... .+. +. ...-.+.+..++..|...+.+.++ +..++..|+.|||.++..-+. .+.
T Consensus 767 ~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~---~~~vr~~a~~~l~~l~~~~~~~~~~---- 835 (876)
T 1qgr_A 767 EAYTGIVQGLKG----DQENVHPDVMLVQPRVEFILSFIDHIAGDEDH---TDGVVACAAGLIGDLCTAFGKDVLK---- 835 (876)
T ss_dssp HHHHHHHHHHHC----SSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCC---CHHHHHHHHHHHHHHHHHHCTHHHH----
T ss_pred HHHHHHHHHHcc----CcccccchHHHHHHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHHHHHHhCcHHHH----
Confidence 555444332111 000 00 011125677777666555543211 258999999999998754322 211
Q ss_pred ccccccccChhh-HHHHHHHHHHH-HHHcCCChhhHhHHHHHHHHHHHH
Q 000134 753 QRFKIECSDDDL-IFELIDKHLAR-AFRAAPDTIIQDSAALAIQELLKI 799 (2096)
Q Consensus 753 ~~~~~~~~~~~f-~~~ll~~~Lv~-af~s~~dt~~Q~~~A~AiQElLk~ 799 (2096)
+| .-.++.. |++ ++ ...|+.....++||+..+.+.
T Consensus 836 ----------~~~~~~~i~~-ll~~~l-~~~~~~~r~~a~~a~~~~~~~ 872 (876)
T 1qgr_A 836 ----------LVEARPMIHE-LLTEGR-RSKTNKAKTLARWATKELRKL 872 (876)
T ss_dssp ----------HHHTSHHHHH-HHHHHH-HCSCHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHhcHHHHH-HHHHHh-hcCCHhHHHHHHHHHHHHHHh
Confidence 11 1122332 334 44 567888899999999998875
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.58 E-value=0.00046 Score=89.60 Aligned_cols=556 Identities=14% Similarity=0.131 Sum_probs=286.9
Q ss_pred HHHHhhhcccchhhhhhhhhhchhhhhhhcCccc-hHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCcccccccccc
Q 000134 6 SEILDLALRDEFDEVRAEAVISLPVIVMWSGLGV-LTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDK 84 (2096)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (2096)
...+-..|.++..++|..|+..+.-++..-||.. ...+...|.... +..+.|++.++..||-+....|..
T Consensus 12 i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~~~~~l~~~L~~~~-d~~~~vr~~~~~~L~~~~~~~~~~-------- 82 (588)
T 1b3u_A 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTI-YDEDEVLLALAEQLGTFTTLVGGP-------- 82 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTC-CCCHHHHHHHHHHHTTCSGGGTSG--------
T ss_pred HHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHhccCcH--------
Confidence 3455567899999999999999988887767642 122233333222 334456666555555332211100
Q ss_pred cccccccccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccch
Q 000134 85 NACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEV 164 (2096)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v 164 (2096)
.. ...+-+++..+ ....+.+|
T Consensus 83 --------------------------------~~--------------------------~~~ll~~L~~l-~~~~~~~v 103 (588)
T 1b3u_A 83 --------------------------------EY--------------------------VHCLLPPLESL-ATVEETVV 103 (588)
T ss_dssp --------------------------------GG--------------------------GGGGHHHHHHH-TTSSCHHH
T ss_pred --------------------------------HH--------------------------HHHHHHHHHHH-HhCchHHH
Confidence 00 01133434443 34456789
Q ss_pred hhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHH
Q 000134 165 QLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDV 244 (2096)
Q Consensus 165 ~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (2096)
+-+.+..|..+..+.+.+..... ...-+..+..+++..+|.+++..+..+... .+ ......++..
T Consensus 104 R~~a~~~L~~l~~~~~~~~~~~~---l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~---------~~---~~~~~~l~~~ 168 (588)
T 1b3u_A 104 RDKAVESLRAISHEHSPSDLEAH---FVPLVKRLAGGDWFTSRTSACGLFSVCYPR---------VS---SAVKAELRQY 168 (588)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHT---HHHHHHHHHTCSSHHHHHHHGGGHHHHTTT---------SC---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHH---HHHHHHHHhcCCCcHHHHHHHHHHHHHHHh---------cC---HHHHHHHHHH
Confidence 99999999999988775422122 233344455788889999999888875411 11 1123444444
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH-HHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccch
Q 000134 245 IKLAFTAADDPLILETLLESTAELMMAVDVHSQHFL-FLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSK 323 (2096)
Q Consensus 245 ~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~-~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~ 323 (2096)
+... ..-+|+.|....+.++|.++.. .+.+... ..+=.|+..+..++..||..|..-+..++......
T Consensus 169 l~~l-~~d~~~~VR~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-------- 237 (588)
T 1b3u_A 169 FRNL-CSDDTPMVRRAAASKLGEFAKV--LELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE-------- 237 (588)
T ss_dssp HHHH-HTCSCHHHHHHHHHHHHHHHHT--SCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--------
T ss_pred HHHH-hCCCCHHHHHHHHHHHHHHHHH--hcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--------
Confidence 4443 3446788999999999998543 2443322 22334667778889999999999998887654221
Q ss_pred hhhhhhhhhHHHHHHhcCchHHHHHHHHHHhCCChHHHHH-----hhcccccchhhhcc-ccChhH----HHHHHHHHHH
Q 000134 324 AVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVK-----KMIPAVLPKLVVSQ-QDNDQA----VNIINELAKC 393 (2096)
Q Consensus 324 ~~~~~~~l~~~~~~~l~~rp~~~~~~~e~llg~~~~~fL~-----~~~~~~LP~LVl~~-~~~~~~----~~~i~~ia~~ 393 (2096)
...+.+.+.+.+.+...-..+|..|-..+| .+.. ...+.++|.++-.- ..+..+ ...+..++..
T Consensus 238 --~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~----~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~ 311 (588)
T 1b3u_A 238 --DLEALVMPTLRQAAEDKSWRVRYMVADKFT----ELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCEN 311 (588)
T ss_dssp --HHHHHTHHHHHHHHTCSSHHHHHHHHHTHH----HHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHccCCCHHHHHHHHHHHH----HHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 111222333333222221223333222222 1111 11234566665432 222222 2445556655
Q ss_pred cCCCch--hHHhhhHHHHHHHHhccccH---HHHHHHHHHHhhhcCCChHHHHHHhhHHHHHHHHHhhcCCCchhHhhhh
Q 000134 394 LNTDMV--PLIVTWIPKVLAFALHQADE---RRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERL 468 (2096)
Q Consensus 394 ~~~~~~--~l~~~~~~~Ila~ll~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~eLl~~~~~~~~~~~~~~~ 468 (2096)
++.... +.+..-+|.+.. ++...+. ..+..+|..+....+. +......+|.++ + .+++.+.+ .+..
T Consensus 312 ~~~~~~~~~~~~~l~p~l~~-~l~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~p~l~-~---~l~d~~~~--Vr~~ 382 (588)
T 1b3u_A 312 LSADCRENVIMSQILPCIKE-LVSDANQHVKSALASVIMGLSPILGK--DNTIEHLLPLFL-A---QLKDECPE--VRLN 382 (588)
T ss_dssp SCTTTHHHHHHHTHHHHHHH-HHTCSCHHHHHHHHTTGGGGHHHHCH--HHHHHHTHHHHH-H---HHTCSCHH--HHHH
T ss_pred hChhhhhhHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHhhH--hHHHHHHHHHHH-H---HhCCCchH--HHHH
Confidence 544321 111122222222 2222221 2233333333322221 111222333333 2 33443322 1111
Q ss_pred cchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHH
Q 000134 469 NRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHA 548 (2096)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~a 548 (2096)
+..++..+.+.+ +.+ .+.+.++-.+..+ ...++...|..++..|+.+.+.+|+. .+.|+++..|...
T Consensus 383 --a~~~l~~l~~~~-~~~----~~~~~~lp~l~~~----~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~ 449 (588)
T 1b3u_A 383 --IISNLDCVNEVI-GIR----QLSQSLLPAIVEL----AEDAKWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAW 449 (588)
T ss_dssp --HHTTCHHHHHHS-CHH----HHHHHHHHHHHHH----HTCSSHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHG
T ss_pred --HHHHHHHHHHhc-CHH----HHHHHHHHHHHHH----hcCCCchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHH
Confidence 122222222211 111 1223333333221 23345667788999999999999985 3457888888888
Q ss_pred hcC--CCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcc
Q 000134 549 INK--ESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIH 626 (2096)
Q Consensus 549 L~~--~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~ 626 (2096)
|.. +++|..++.++..++..+.. + ..+..++..++.+.. +.....+..+...+..+.......
T Consensus 450 l~d~~~~Vr~~a~~~l~~l~~~~~~---~---~~~~~llp~l~~~~~---~~~~~~R~~a~~~l~~l~~~~~~~------ 514 (588)
T 1b3u_A 450 LVDHVYAIREAATSNLKKLVEKFGK---E---WAHATIIPKVLAMSG---DPNYLHRMTTLFCINVLSEVCGQD------ 514 (588)
T ss_dssp GGCSSHHHHHHHHHHHHHHHHHHCH---H---HHHHHTHHHHHHTTT---CSCHHHHHHHHHHHHHHHHHHHHH------
T ss_pred hcCCcHHHHHHHHHHHHHHHHHhCc---h---hHHHHHHHHHHHHhh---CCCHHHHHHHHHHHHHHHHhcCHH------
Confidence 864 35889999999999888642 1 123344444444433 222344556666666553321110
Q ss_pred cCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHH
Q 000134 627 EFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLS 706 (2096)
Q Consensus 627 ~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~ 706 (2096)
. -...-+..+.+.++++++.||..++.-|..+...-..... -.
T Consensus 515 ---------------~---------~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~-------------~~ 557 (588)
T 1b3u_A 515 ---------------I---------TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL-------------QS 557 (588)
T ss_dssp ---------------H---------HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHH-------------HH
T ss_pred ---------------H---------HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhh-------------HH
Confidence 0 0123345566778888999999999999887754322110 01
Q ss_pred HHHHHHHHHhhhhccccchhhHHHHHHHhhcccC
Q 000134 707 TLISSLLRGCAEESRTVVGQKLKLVCADCLGALG 740 (2096)
Q Consensus 707 ~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IG 740 (2096)
.++..|.....+ .+.+++..+.++|+.|.
T Consensus 558 ~~~p~l~~l~~d-----~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 558 EVKPILEKLTQD-----QDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHTTC-----SSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC-----CchhHHHHHHHHHHHhh
Confidence 222222222222 24689999999998764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.53 E-value=0.0002 Score=85.38 Aligned_cols=325 Identities=13% Similarity=0.038 Sum_probs=191.2
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~ 1124 (2096)
.++...++-|.|..|+-+++..+... | +.++...+. ...+
T Consensus 8 ~~~~~~~~~g~~~~A~~~~~~~l~~~-----p-----------------------~~~~~~~~~------------a~~~ 47 (359)
T 3ieg_A 8 ELGKKLLAAGQLADALSQFHAAVDGD-----P-----------------------DNYIAYYRR------------ATVF 47 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----T-----------------------TCHHHHHHH------------HHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-----c-----------------------ccHHHHHHH------------HHHH
Confidence 57888899999999999999877642 1 111222222 2234
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccCh---hhhhhHhHHH-----------H
Q 000134 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP---QYKKTWCMQG-----------V 1190 (2096)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p---~~~~~~~~~~-----------v 1190 (2096)
...|+|++|..+|+++++..|++......+-.|+...|+++......+......| +....+..++ .
T Consensus 48 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 127 (359)
T 3ieg_A 48 LAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQA 127 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888887787777777777777788888777776666555555 4333332222 4
Q ss_pred HHHHhcCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhh
Q 000134 1191 QAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRA 1270 (2096)
Q Consensus 1191 EAAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~ 1270 (2096)
......|+|+.-.+++...-.. .+.+......+|.++ +..++..+..+.++.+.. +.....+ .
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~~~~-----~~~~~~~----~ 190 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEV------CVWDAELRELRAECF--IKEGEPRKAISDLKAASK-----LKSDNTE----A 190 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHT-----TCSCCHH----H
T ss_pred HHHHHccCHHHHHHHHHHHHHh------CCCchHHHHHHHHHH--HHCCCHHHHHHHHHHHHH-----hCCCCHH----H
Confidence 6677888887776666543221 011223333444443 445555544443332221 1111111 1
Q ss_pred hHHHHHh-hhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhH
Q 000134 1271 YPFIVKL-HLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVG 1349 (2096)
Q Consensus 1271 y~~l~kL-H~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~ 1349 (2096)
+-.+-.+ ....+.+++...+ +.=+..-..+...+..+-.+. ..
T Consensus 191 ~~~la~~~~~~~~~~~A~~~~------------------------~~a~~~~~~~~~~~~~~~~~~------------~~ 234 (359)
T 3ieg_A 191 FYKISTLYYQLGDHELSLSEV------------------------RECLKLDQDHKRCFAHYKQVK------------KL 234 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH------------------------HHHHHHCTTCHHHHHHHHHHH------------HH
T ss_pred HHHHHHHHHHcCCHHHHHHHH------------------------HHHHhhCccchHHHHHHHHHH------------HH
Confidence 1111111 1112222222211 111111111111111111111 12
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh------HHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1350 NCWLQYAKLCRLAGHYETATRAILEAQASGAPN------VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~all~a~~~~~~~------~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
...+..|.+..+.|.++.|...+.++....+.+ +....|..+...|+..+|+..++++++..|
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----------- 303 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP----------- 303 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-----------
Confidence 334566888999999999999999988765442 344578999999999999999999876311
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l 1500 (2096)
..+.++..+|......|+ .++....|+++++++|....++..+++-+..+
T Consensus 304 -------------------------~~~~~~~~~~~~~~~~g~--~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 304 -------------------------DNVNALKDRAEAYLIEEM--YDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp -------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred -------------------------ccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 013456677776666664 78899999999999999988888888776543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00029 Score=91.25 Aligned_cols=151 Identities=9% Similarity=-0.047 Sum_probs=99.9
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH-hcc--------
Q 000134 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-HKS-------- 1114 (2096)
Q Consensus 1044 ~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~-~~~-------- 1114 (2096)
..++.+..++|.|.+|+.+++....... ....+..|..+|...++.|....+... ...
T Consensus 121 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 187 (597)
T 2xpi_A 121 FWLAQVYCCTGDYARAKCLLTKEDLYNR-------------SSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNAN 187 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHTCGGGT-------------CHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC-------
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHhcccc-------------chhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccc
Confidence 3688999999999999999987532110 124677899999999999988887651 111
Q ss_pred -------------CChhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHH-------------------------
Q 000134 1115 -------------LSLQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLN------------------------- 1156 (2096)
Q Consensus 1115 -------------~sl~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~------------------------- 1156 (2096)
......+..|.+.|++++|..+|+++++..|++.+....+..
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 267 (597)
T 2xpi_A 188 KLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED 267 (597)
T ss_dssp ---CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGG
T ss_pred cccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccch
Confidence 112345667889999999999999999999987665433322
Q ss_pred -------------HHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhhHHHhhccc
Q 000134 1157 -------------CLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2096)
Q Consensus 1157 -------------CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l~~~l~~~ 1209 (2096)
++.+.|+++......+.+... |.. .......+.+..+.|+++.-.++...+
T Consensus 268 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 331 (597)
T 2xpi_A 268 AAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKS-SDLLLCKADTLFVRSRFIDVLAITTKI 331 (597)
T ss_dssp HHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-Cch-HHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 223446666655555544332 221 122233456777888888776665543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=98.37 E-value=0.00057 Score=85.02 Aligned_cols=325 Identities=12% Similarity=0.049 Sum_probs=182.7
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~ 1124 (2096)
.++....++|.|..|+-+++..+... |. ....+..+..+|
T Consensus 31 ~~~~~~~~~g~~~~A~~~~~~~l~~~-----p~-------~~~~~~~l~~~~---------------------------- 70 (450)
T 2y4t_A 31 ELGKKLLAAGQLADALSQFHAAVDGD-----PD-------NYIAYYRRATVF---------------------------- 70 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----TT-------CHHHHHHHHHHH----------------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-----Cc-------cHHHHHHHHHHH----------------------------
Confidence 57888899999999999999876532 10 112233333343
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhh---hhHhH-----------HHH
Q 000134 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK---KTWCM-----------QGV 1190 (2096)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~---~~~~~-----------~~v 1190 (2096)
...|++++|..+|+++++..|++......+-.|+..+|+++......+......|... ..+.. ...
T Consensus 71 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 150 (450)
T 2y4t_A 71 LAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQA 150 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666556666666666666665555554444334322 11111 113
Q ss_pred HHHHhcCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhh
Q 000134 1191 QAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRA 1270 (2096)
Q Consensus 1191 EAAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~ 1270 (2096)
.+....|+|+.-.+++..+-.. .+.+......+|.++ ...++..+..+.++.+... .......
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~-----~~~~~~~---- 213 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILEV------CVWDAELRELRAECF--IKEGEPRKAISDLKAASKL-----KNDNTEA---- 213 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHH--HHTTCGGGGHHHHHHHHHH-----HCSCHHH----
T ss_pred HHHHHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHH--HHCCCHHHHHHHHHHHHHh-----CCCCHHH----
Confidence 4456778887766655543211 011222333444443 4456665555444433221 1111111
Q ss_pred hHHHHH-hhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhH
Q 000134 1271 YPFIVK-LHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVG 1349 (2096)
Q Consensus 1271 y~~l~k-LH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~ 1349 (2096)
+-.+.. +....+.+++...+ +.=+..-.++...+..+-.++ ..
T Consensus 214 ~~~l~~~~~~~g~~~~A~~~~------------------------~~~~~~~p~~~~~~~~~~~~~------------~~ 257 (450)
T 2y4t_A 214 FYKISTLYYQLGDHELSLSEV------------------------RECLKLDQDHKRCFAHYKQVK------------KL 257 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH------------------------HHHHHHCTTCHHHHHHHHHHH------------HH
T ss_pred HHHHHHHHHHcCCHHHHHHHH------------------------HHHHHhCCChHHHHHHHHHHH------------HH
Confidence 111111 11112222222221 111111111111111111111 12
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh------HHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1350 NCWLQYAKLCRLAGHYETATRAILEAQASGAPN------VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~all~a~~~~~~~------~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
..++..+....+.|.++.|...+.++....+.+ +....|.++...|+..+|+..+++++...|
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p----------- 326 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP----------- 326 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-----------
Confidence 345667999999999999999999988765432 566778999999999999999999875211
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l 1500 (2096)
..+.++..+|......|+ .++.+..|++++++.|....+|..+|......
T Consensus 327 -------------------------~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 376 (450)
T 2y4t_A 327 -------------------------DNVNALKDRAEAYLIEEM--YDEAIQDYETAQEHNENDQQIREGLEKAQRLL 376 (450)
T ss_dssp -------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred -------------------------ccHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCcchHHHHHHHHHHHHHh
Confidence 013456666666655554 78899999999999999999999998765443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00015 Score=85.56 Aligned_cols=278 Identities=10% Similarity=0.046 Sum_probs=176.7
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcC-
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG- 1197 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg- 1197 (2096)
..+..+...|+|++|...|+.+++..|.+......+..|+..+|+++......+......|.....+.. ...+....|
T Consensus 27 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~ 105 (330)
T 3hym_B 27 SLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFA-VGCYYLMVGH 105 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH-HHHHHHHSCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHH-HHHHHHHhhh
Confidence 345556678999999999999999999999888889999999999999988888776666654443333 345677889
Q ss_pred ChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHh
Q 000134 1198 RWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKL 1277 (2096)
Q Consensus 1198 ~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kL 1277 (2096)
+|+.-.+++...-.. .+........+|.++ ...++..+..+.++.+... .......+.. .-.-+
T Consensus 106 ~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~---l~~~~ 169 (330)
T 3hym_B 106 KNEHARRYLSKATTL------EKTYGPAWIAYGHSF--AVESEHDQAMAAYFTAAQL-----MKGCHLPMLY---IGLEY 169 (330)
T ss_dssp CHHHHHHHHHHHHTT------CTTCTHHHHHHHHHH--HHHTCHHHHHHHHHHHHHH-----TTTCSHHHHH---HHHHH
T ss_pred hHHHHHHHHHHHHHh------CCccHHHHHHHHHHH--HHccCHHHHHHHHHHHHHh-----ccccHHHHHH---HHHHH
Confidence 898666665543221 011223334455444 3345554444333332221 1110011000 00000
Q ss_pred hhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHH
Q 000134 1278 HLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAK 1357 (2096)
Q Consensus 1278 H~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~Ak 1357 (2096)
....+.+++.. .+ +++ +.. .+.....|...+.
T Consensus 170 ~~~~~~~~A~~------------------------~~--------------------~~a-l~~---~~~~~~~~~~l~~ 201 (330)
T 3hym_B 170 GLTNNSKLAER------------------------FF--------------------SQA-LSI---APEDPFVMHEVGV 201 (330)
T ss_dssp HHTTCHHHHHH------------------------HH--------------------HHH-HTT---CTTCHHHHHHHHH
T ss_pred HHHhhHHHHHH------------------------HH--------------------HHH-HHh---CCCChHHHHHHHH
Confidence 00111111111 11 111 111 1123567889999
Q ss_pred HHHHcCChHHHHHHHHHHhhc-----------CCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1358 LCRLAGHYETATRAILEAQAS-----------GAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1358 lARKag~~~~A~~all~a~~~-----------~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
+..+.|+++.|...+.++... ..+.+....|.++...|+..+|+..++++++..|
T Consensus 202 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-------------- 267 (330)
T 3hym_B 202 VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP-------------- 267 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------------
T ss_pred HHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc--------------
Confidence 999999999999999888654 2246888999999999999999999999876311
Q ss_pred cCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHH
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDD 1499 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~ 1499 (2096)
. .+.++..+|......|+ .++..+.|+++.++.|....+++.+|..+..
T Consensus 268 -----~-----------------~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 316 (330)
T 3hym_B 268 -----Q-----------------NASTYSAIGYIHSLMGN--FENAVDYFHTALGLRRDDTFSVTMLGHCIEM 316 (330)
T ss_dssp -----T-----------------CSHHHHHHHHHHHHHTC--HHHHHHHHHTTTTTCSCCHHHHHHHHHHHHT
T ss_pred -----c-----------------chHHHHHHHHHHHHhcc--HHHHHHHHHHHHccCCCchHHHHHHHHHHHH
Confidence 0 02245556666555554 6788899999999999999999999887643
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00013 Score=94.73 Aligned_cols=479 Identities=12% Similarity=0.085 Sum_probs=249.4
Q ss_pred cchhhhhhhhhhchhhhhhhc-CccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccccccccccc
Q 000134 15 DEFDEVRAEAVISLPVIVMWS-GLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKNACKLLLNV 93 (2096)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (2096)
|+.++||..++..+.-++..- |+.....++..|+.+..++...|++....+||-+.-..+.. ...+
T Consensus 59 d~~~~vr~~~~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~-----~~~~-------- 125 (588)
T 1b3u_A 59 YDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS-----DLEA-------- 125 (588)
T ss_dssp CCCHHHHHHHHHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH-----HHHH--------
T ss_pred CCcHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH-----HHHH--------
Confidence 778899999998888776553 45556667777887877778899999888888876544321 0000
Q ss_pred ccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccchhhHHHHHHH
Q 000134 94 EDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCVRVIR 173 (2096)
Q Consensus 94 ~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~ 173 (2096)
.+..++..+. .-+...+. +.-..++. .+. ..++ ...-..+.+++.+++ ...+.+|+.++...|.
T Consensus 126 -------~l~~~l~~l~--~~~~~~~R--~~a~~~l~--~~~-~~~~-~~~~~~l~~~l~~l~-~d~~~~VR~~a~~~l~ 189 (588)
T 1b3u_A 126 -------HFVPLVKRLA--GGDWFTSR--TSACGLFS--VCY-PRVS-SAVKAELRQYFRNLC-SDDTPMVRRAAASKLG 189 (588)
T ss_dssp -------THHHHHHHHH--TCSSHHHH--HHHGGGHH--HHT-TTSC-HHHHHHHHHHHHHHH-TCSCHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHh--cCCCcHHH--HHHHHHHH--HHH-HhcC-HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 0001111100 00000000 00000000 000 0000 001245677666665 4568899999999999
Q ss_pred HHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHhhhcC
Q 000134 174 RILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAAD 253 (2096)
Q Consensus 174 ~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (2096)
.+..+...+... ...+..+..++.|++..||.+++..+..+.+. +. .......++..+... ..-+
T Consensus 190 ~l~~~~~~~~~~---~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~------~~-----~~~~~~~~~~~l~~~-~~d~ 254 (588)
T 1b3u_A 190 EFAKVLELDNVK---SEIIPMFSNLASDEQDSVRLLAVEACVNIAQL------LP-----QEDLEALVMPTLRQA-AEDK 254 (588)
T ss_dssp HHHHTSCHHHHH---HTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHH------SC-----HHHHHHHTHHHHHHH-HTCS
T ss_pred HHHHHhcHHhHH---HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHh------CC-----HHHHHHHHHHHHHHH-ccCC
Confidence 999987754221 22334555666999999999999999886521 01 011123344444443 3456
Q ss_pred ChhHHHHHHHHHHHHHhhhcccchhHH-HHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhh
Q 000134 254 DPLILETLLESTAELMMAVDVHSQHFL-FLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELF 332 (2096)
Q Consensus 254 d~~i~eTll~~~~~i~~~~~~~~e~~~-~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~ 332 (2096)
++.+..+...++|.|+... +.+.+. ..+=.|+..|..+++-||..|..-+-.++....... ......+.+.
T Consensus 255 ~~~vR~~a~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~------~~~~~~~~l~ 326 (588)
T 1b3u_A 255 SWRVRYMVADKFTELQKAV--GPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC------RENVIMSQIL 326 (588)
T ss_dssp SHHHHHHHHHTHHHHHHHH--CHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT------HHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHHHHHh--CcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh------hhhHHHHHHH
Confidence 7889999999999996543 334322 223346677788999999999999988877653210 0001124455
Q ss_pred HHHHHHhcCchHHHHHHHHHHhCCChHHHH--Hhhcccccchhhhc-cccChhHH----HHHHHHHHHcCCCchhHHhhh
Q 000134 333 DYLSVRLASRPIMVREFAEAAFGVETEELV--KKMIPAVLPKLVVS-QQDNDQAV----NIINELAKCLNTDMVPLIVTW 405 (2096)
Q Consensus 333 ~~~~~~l~~rp~~~~~~~e~llg~~~~~fL--~~~~~~~LP~LVl~-~~~~~~~~----~~i~~ia~~~~~~~~~l~~~~ 405 (2096)
+++.+.+......++.-+-..+|- .-..+ ....++++|.|+-. +..+..++ ..+..+++..+.. .+...-
T Consensus 327 p~l~~~l~d~~~~vR~~a~~~l~~-l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~~ 403 (588)
T 1b3u_A 327 PCIKELVSDANQHVKSALASVIMG-LSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR--QLSQSL 403 (588)
T ss_dssp HHHHHHHTCSCHHHHHHHHTTGGG-GHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH--HHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHH-HHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH--HHHHHH
Confidence 665554443323344332212221 11000 01234566665532 22221211 1222233322211 111122
Q ss_pred HHHHHHHHhcccc---HHHHHHHHHHHhhhcCCChHHHHHHhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhc
Q 000134 406 IPKVLAFALHQAD---ERRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVL 482 (2096)
Q Consensus 406 ~~~Ila~ll~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (2096)
+|.+... +.... ...+..+|..+....+.+. + .+.++.-|+..+.+.+.. .+.. +..++..+.+.+
T Consensus 404 lp~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~---~---~~~l~~~l~~~l~d~~~~--Vr~~--a~~~l~~l~~~~ 472 (588)
T 1b3u_A 404 LPAIVEL-AEDAKWRVRLAIIEYMPLLAGQLGVEF---F---DEKLNSLCMAWLVDHVYA--IREA--ATSNLKKLVEKF 472 (588)
T ss_dssp HHHHHHH-HTCSSHHHHHHHHHHHHHHHHHHCGGG---C---CHHHHHHHHHGGGCSSHH--HHHH--HHHHHHHHHHHH
T ss_pred HHHHHHH-hcCCCchHHHHHHHHHHHHHHHcCHHH---H---HHHHHHHHHHHhcCCcHH--HHHH--HHHHHHHHHHHh
Confidence 3333322 21111 2234445544443333211 0 122332333344444332 1111 233443333322
Q ss_pred cCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcC--CCcchhhhH
Q 000134 483 TGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINK--ESLQCEGLS 560 (2096)
Q Consensus 483 ~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~--~~L~~~~l~ 560 (2096)
. + .|..+.++-.+.. +...++...|..++.+++.+.+.+|... +.++++-.|...+.. +++|..+++
T Consensus 473 ~-~----~~~~~~llp~l~~----~~~~~~~~~R~~a~~~l~~l~~~~~~~~--~~~~~~~~l~~~l~d~~~~Vr~~a~~ 541 (588)
T 1b3u_A 473 G-K----EWAHATIIPKVLA----MSGDPNYLHRMTTLFCINVLSEVCGQDI--TTKHMLPTVLRMAGDPVANVRFNVAK 541 (588)
T ss_dssp C-H----HHHHHHTHHHHHH----TTTCSCHHHHHHHHHHHHHHHHHHHHHH--HHHHTHHHHHHGGGCSCHHHHHHHHH
T ss_pred C-c----hhHHHHHHHHHHH----HhhCCCHHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhhCCCCCchHHHHHHH
Confidence 1 1 2333344443332 2234456778889999999999998743 667788788877854 568888999
Q ss_pred HHHHHHHHhc
Q 000134 561 VLHFFIEQLS 570 (2096)
Q Consensus 561 ~W~~fv~~L~ 570 (2096)
++..+...+.
T Consensus 542 ~l~~l~~~~~ 551 (588)
T 1b3u_A 542 SLQKIGPILD 551 (588)
T ss_dssp HHHHHGGGSC
T ss_pred HHHHHHHHhc
Confidence 9998887763
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00057 Score=81.43 Aligned_cols=304 Identities=13% Similarity=0.094 Sum_probs=187.7
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCCh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~W 1199 (2096)
....+...|+|++|..+|+.+++..|++......+-.|+..+|+++..+...+......|+....+ .....+.+..|+|
T Consensus 9 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 9 LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAAR-LQRGHLLLKQGKL 87 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHH-HHHHHHHHHcCCh
Confidence 445677899999999999999999999999999999999999999998888877666566544322 3445677889999
Q ss_pred hhHHHhhcccCccCccccCCC-CCcchhHHHHH----------HHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHH
Q 000134 1200 DLMDEYLSGADEEGLLCSSSE-SNASFDMDVAK----------ILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYT 1268 (2096)
Q Consensus 1200 d~l~~~l~~~~~~gl~~~~~~-~~~~f~~~l~k----------aL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~ 1268 (2096)
+.-.+++...-... +.. ........++. +......++..+..+.++.+... ..
T Consensus 88 ~~A~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~------- 151 (359)
T 3ieg_A 88 DEAEDDFKKVLKSN----PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV-----CV------- 151 (359)
T ss_dssp HHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT-------
T ss_pred HHHHHHHHHHHhcC----CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CC-------
Confidence 87766655432210 000 01111112221 11112222222222222111100 00
Q ss_pred hhhHHHHHhhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhh--hccCChhhhhhHHHHHHhhcCcCCCCc
Q 000134 1269 RAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLK--YTQPSLWAREPLLAFRRMVFGASGLGA 1346 (2096)
Q Consensus 1269 r~y~~l~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~--~~~~~~~~~e~iLslRr~vl~~~~~~~ 1346 (2096)
.... .|..+-. .-..++ .+-+-.++++ +.. .+
T Consensus 152 ----------------------------------~~~~------~~~~~~~~~~~~~~~--~~A~~~~~~~-~~~---~~ 185 (359)
T 3ieg_A 152 ----------------------------------WDAE------LRELRAECFIKEGEP--RKAISDLKAA-SKL---KS 185 (359)
T ss_dssp ----------------------------------TCHH------HHHHHHHHHHHTTCH--HHHHHHHHHH-HTT---CS
T ss_pred ----------------------------------CchH------HHHHHHHHHHHCCCH--HHHHHHHHHH-HHh---CC
Confidence 0000 0000000 000010 1111112221 111 12
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChH--------------HHHHHHHHHHcCCchHHHHHHHHHhhcCC
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNV--------------HMEKAKLLWSTRRSDGAIAELQQNLLNKP 1412 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~~~--------------~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~ 1412 (2096)
.....|...+.+..+.|.++.|...+.++....+... .+..|..+...|+..+|+..++++++..|
T Consensus 186 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 265 (359)
T 3ieg_A 186 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP 265 (359)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3457899999999999999999999999887654321 23558889999999999999999876321
Q ss_pred cccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHH
Q 000134 1413 VEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFY 1492 (2096)
Q Consensus 1413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~ 1492 (2096)
. .......++..+|......|+ .++.++.|.++++.+|....+|+.
T Consensus 266 ~--------------------------------~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~ 311 (359)
T 3ieg_A 266 S--------------------------------VAEYTVRSKERICHCFSKDEK--PVEAIRICSEVLQMEPDNVNALKD 311 (359)
T ss_dssp S--------------------------------SHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred C--------------------------------chHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCcccHHHHHH
Confidence 1 011234556677777666664 889999999999999999999999
Q ss_pred HHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1493 MAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1493 la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
+|..|.+. | -...|+..|-+++...+++
T Consensus 312 ~~~~~~~~--------------g--------~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 312 RAEAYLIE--------------E--------MYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HHHHHHHT--------------T--------CHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHc--------------C--------CHHHHHHHHHHHHhcCCCC
Confidence 99887432 1 1236888888888877654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.0026 Score=82.35 Aligned_cols=393 Identities=11% Similarity=0.049 Sum_probs=212.5
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHh--ccCC---hh
Q 000134 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH--KSLS---LQ 1118 (2096)
Q Consensus 1044 ~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~--~~~s---l~ 1118 (2096)
..++....+.|.|..|+.+++.-+... | ....+..|..+|...++++....+.... ...+ ..
T Consensus 88 ~~~~~~~~~~g~~~~A~~~~~~~~~~~-----p--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 154 (597)
T 2xpi_A 88 RLWRHDALMQQQYKCAAFVGEKVLDIT-----G--------NPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRY 154 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-----C--------CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHH
T ss_pred HHHHHHHHHccCchHHHHHHHHHHhhC-----C--------CchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHH
Confidence 357788899999999999999876432 1 1235678999999999999877776532 1112 22
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccC----------------CCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhh
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQME----------------PTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK 1182 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~----------------p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~ 1182 (2096)
..+..|.+.|+|++|...|+...... |.+......+..++.+.|+++..+...+.+....|+..
T Consensus 155 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 234 (597)
T 2xpi_A 155 LAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCY 234 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhh
Confidence 34567899999999999998532222 22356677888999999999988887776655545422
Q ss_pred hhHhHHH-------------------------------------HHHHHhcCChhhHHHhhcccCccCccccCCCCCcch
Q 000134 1183 KTWCMQG-------------------------------------VQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASF 1225 (2096)
Q Consensus 1183 ~~~~~~~-------------------------------------vEAAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f 1225 (2096)
..+..++ +.+..+.|+|+.-.+++..+... +.+...
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~ 307 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-------EKSSDL 307 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-------GGCHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-------CchHHH
Confidence 2211111 11122345555554444443220 122223
Q ss_pred hHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhhhhhHHHHHHHhhhccccccccCCCChH
Q 000134 1226 DMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDL 1305 (2096)
Q Consensus 1226 ~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~ 1305 (2096)
...++.++ ...++..+..+..+++... .......+...-....+. .+.+++..+..... +. .+.+.
T Consensus 308 ~~~l~~~~--~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~---~~-~~~~~ 373 (597)
T 2xpi_A 308 LLCKADTL--FVRSRFIDVLAITTKILEI-----DPYNLDVYPLHLASLHES---GEKNKLYLISNDLV---DR-HPEKA 373 (597)
T ss_dssp HHHHHHHH--HHTTCHHHHHHHHHHHHHH-----CTTCCTTHHHHHHHHHHH---TCHHHHHHHHHHHH---HH-CTTSH
T ss_pred HHHHHHHH--HHhcCHHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHHh---CCHHHHHHHHHHHH---hh-CcccH
Confidence 33344333 3455555444444333221 111111222211222222 22233222221000 00 00111
Q ss_pred HHHHHHHHHHHHhhh--ccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CC
Q 000134 1306 KFSKLMANWENRLKY--TQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--AP 1381 (2096)
Q Consensus 1306 ~~~~l~~~W~~RL~~--~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~ 1381 (2096)
. .|...... -...+ .+-+-.+++++ . ........|...+.+..+.|+++.|...+.++.... .+
T Consensus 374 ~------~~~~l~~~~~~~g~~--~~A~~~~~~~~-~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 441 (597)
T 2xpi_A 374 V------TWLAVGIYYLCVNKI--SEARRYFSKSS-T---MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH 441 (597)
T ss_dssp H------HHHHHHHHHHHTTCH--HHHHHHHHHHH-H---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS
T ss_pred H------HHHHHHHHHHHhccH--HHHHHHHHHHH-H---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence 0 11111000 00111 11111122211 1 112335678888888888888888888888776654 34
Q ss_pred hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHH
Q 000134 1382 NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWI 1461 (2096)
Q Consensus 1382 ~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl 1461 (2096)
.+....+..+...|+..+|+..++++++..+. .+.++..+|...
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------------------------------~~~~~~~l~~~~ 485 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALFQY------------------------------------DPLLLNELGVVA 485 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------------ChHHHHHHHHHH
Confidence 56667778888888888888888877642110 022344555555
Q ss_pred HHhCCCCHHHHHHHHHHHHHh------ccc-hHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHH
Q 000134 1462 HYTGQKQKEDVITLYSRVREL------QPM-WEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAK 1534 (2096)
Q Consensus 1462 ~~~~~~~~~~i~~~Y~~a~~l------~~~-weK~~~~la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~ 1534 (2096)
...|+ .++..+.|+++.+. .|. |..+|+.+|..|-+. | -...|+..|-+
T Consensus 486 ~~~g~--~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~--------------g--------~~~~A~~~~~~ 541 (597)
T 2xpi_A 486 FNKSD--MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL--------------K--------MYDAAIDALNQ 541 (597)
T ss_dssp HHTTC--HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT--------------T--------CHHHHHHHHHH
T ss_pred HHhCC--HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh--------------c--------CHHHHHHHHHH
Confidence 55554 67788888888877 443 467777777765321 1 12356777777
Q ss_pred hhccCCcc
Q 000134 1535 GLHRGHKN 1542 (2096)
Q Consensus 1535 sl~~g~~~ 1542 (2096)
++..+++.
T Consensus 542 ~~~~~p~~ 549 (597)
T 2xpi_A 542 GLLLSTND 549 (597)
T ss_dssp HHHHSSCC
T ss_pred HHHhCCCC
Confidence 77766543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0011 Score=80.98 Aligned_cols=332 Identities=15% Similarity=0.100 Sum_probs=181.2
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCCh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~W 1199 (2096)
....+-+.|++++|...|+.+++..|++......+-.++...|+++......+......|.....+. ....+..+.|+|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~-~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS-NLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHH-HHHHHHHHCCCH
Confidence 3455667888888888888888888888777666667777778887776666555444454332222 233455677787
Q ss_pred hhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhhh
Q 000134 1200 DLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLHL 1279 (2096)
Q Consensus 1200 d~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH~ 1279 (2096)
+.-.++...+-.. .+........+|.++. ..++..+..+..+.+... . ++.+...+..-.-+..
T Consensus 84 ~~A~~~~~~al~~------~p~~~~~~~~l~~~~~--~~g~~~~A~~~~~~al~~-----~---p~~~~~~~~l~~~~~~ 147 (388)
T 1w3b_A 84 QEAIEHYRHALRL------KPDFIDGYINLAAALV--AAGDMEGAVQAYVSALQY-----N---PDLYCVRSDLGNLLKA 147 (388)
T ss_dssp HHHHHHHHHHHHH------CTTCHHHHHHHHHHHH--HHSCSSHHHHHHHHHHHH-----C---TTCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc------CcchHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHh-----C---CCcHHHHHHHHHHHHH
Confidence 7665555433210 0011222344554443 344544444333322211 1 1111000001111112
Q ss_pred hhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHH
Q 000134 1280 LQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLC 1359 (2096)
Q Consensus 1280 L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklA 1359 (2096)
+.+.+++........ .. .+... ..|...-......-+..+-+-.+++++ . ..+.....|...+.+.
T Consensus 148 ~g~~~~A~~~~~~al--~~--~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~al-~---~~p~~~~~~~~lg~~~ 213 (388)
T 1w3b_A 148 LGRLEEAKACYLKAI--ET--QPNFA------VAWSNLGCVFNAQGEIWLAIHHFEKAV-T---LDPNFLDAYINLGNVL 213 (388)
T ss_dssp TSCHHHHHHHHHHHH--HH--CTTCH------HHHHHHHHHHHTTTCHHHHHHHHHHHH-H---HCTTCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH--Hh--CCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHH-h---cCCCcHHHHHHHHHHH
Confidence 223333332221000 00 00000 011111111100001111222222221 1 1223466788999999
Q ss_pred HHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCc
Q 000134 1360 RLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPV 1437 (2096)
Q Consensus 1360 RKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1437 (2096)
.+.|.++.|...+.++....+ +.+....+.++...|+..+|+..++++++..|.
T Consensus 214 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------------------ 269 (388)
T 1w3b_A 214 KEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH------------------------ 269 (388)
T ss_dssp HTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS------------------------
T ss_pred HHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------------------
Confidence 999999999999888877654 456677888999999999999999988752110
Q ss_pred ccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcc
Q 000134 1438 LSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPS 1517 (2096)
Q Consensus 1438 ~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~g~~ 1517 (2096)
.+.++..+|......|+ .++.++.|.++++..|....+|+.+|..+.+. |
T Consensus 270 ------------~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--------------g-- 319 (388)
T 1w3b_A 270 ------------FPDAYCNLANALKEKGS--VAEAEDCYNTALRLCPTHADSLNNLANIKREQ--------------G-- 319 (388)
T ss_dssp ------------CHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT--------------T--
T ss_pred ------------CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc--------------C--
Confidence 02345566666666664 77888999999999998888888887765321 1
Q ss_pred hhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1518 EKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1518 ~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
-...++..|-+++...+.+
T Consensus 320 ------~~~~A~~~~~~al~~~p~~ 338 (388)
T 1w3b_A 320 ------NIEEAVRLYRKALEVFPEF 338 (388)
T ss_dssp ------CHHHHHHHHHHHTTSCTTC
T ss_pred ------CHHHHHHHHHHHHhcCCCc
Confidence 1235778888888766553
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0018 Score=81.57 Aligned_cols=262 Identities=10% Similarity=0.021 Sum_probs=154.0
Q ss_pred hcCHHHHHHHHHHHHc-----c--CCC-------chhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHH
Q 000134 1127 SGNWAEVFTSCEQALQ-----M--EPT-------SVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQA 1192 (2096)
Q Consensus 1127 ~G~W~~A~~~YE~~Lq-----~--~p~-------~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEA 1192 (2096)
.|++++|..+|+.+++ . .|+ +......+-.|+...|+++..+...+......|. .........+
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHH
Confidence 7888889888888887 4 333 3344556677788888888887777766555554 2233344566
Q ss_pred HHhcCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhH
Q 000134 1193 AWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYP 1272 (2096)
Q Consensus 1193 AWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~ 1272 (2096)
.+..|+|+.-.+++...-.. .+........+|.++ ...++..+..+.++.+... ...... ++-
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~-----~~~~~~----~~~ 342 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKL------DSNNSSVYYHRGQMN--FILQNYDQAGKDFDKAKEL-----DPENIF----PYI 342 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTT------CTTCTHHHHHHHHHH--HHTTCTTHHHHHHHHHHHT-----CSSCSH----HHH
T ss_pred HHHCCCHHHHHHHHHHHhhc------CcCCHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHh-----ChhhHH----HHH
Confidence 77888887765555433211 011122333344333 3445554444433332211 111000 010
Q ss_pred HHHH-hhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHH
Q 000134 1273 FIVK-LHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNC 1351 (2096)
Q Consensus 1273 ~l~k-LH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~ 1351 (2096)
.+.. +....+.+++... + ++++ .. .......
T Consensus 343 ~l~~~~~~~~~~~~A~~~------------------------~--------------------~~~~-~~---~~~~~~~ 374 (514)
T 2gw1_A 343 QLACLAYRENKFDDCETL------------------------F--------------------SEAK-RK---FPEAPEV 374 (514)
T ss_dssp HHHHHTTTTTCHHHHHHH------------------------H--------------------HHHH-HH---STTCSHH
T ss_pred HHHHHHHHcCCHHHHHHH------------------------H--------------------HHHH-HH---cccCHHH
Confidence 0000 0001111111111 1 1100 00 0112457
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC--CCh------HHHHHHHHHHH---cCCchHHHHHHHHHhhcCCcccccccc
Q 000134 1352 WLQYAKLCRLAGHYETATRAILEAQASG--APN------VHMEKAKLLWS---TRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2096)
Q Consensus 1352 WL~~AklARKag~~~~A~~all~a~~~~--~~~------~~iE~AKLLW~---~g~~~~Ai~~L~~~i~~~~~~~~~~~~ 1420 (2096)
|...+.+..+.|+++.|...+.++.... .+. +....|.++.. .|+..+|+..+++++...|.
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~------- 447 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR------- 447 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-------
Confidence 8899999999999999999998886653 222 88899999999 99999999999998752110
Q ss_pred cccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHH
Q 000134 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYM 1493 (2096)
Q Consensus 1421 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~l 1493 (2096)
.+.++..+|......|+ .++....|+++.++.|+....+..+
T Consensus 448 -----------------------------~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 448 -----------------------------SEQAKIGLAQMKLQQED--IDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp -----------------------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred -----------------------------cHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhccccHHHHHHH
Confidence 02345666666655554 7888999999999999988887766
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0029 Score=78.54 Aligned_cols=302 Identities=11% Similarity=0.071 Sum_probs=183.0
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd 1200 (2096)
+..+...|+|++|..+|+.+++..|++......+-.|+..+|+++..+...+......|+....+ .....+....|+++
T Consensus 33 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-~~l~~~~~~~g~~~ 111 (450)
T 2y4t_A 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAAR-LQRGHLLLKQGKLD 111 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-HHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH-HHHHHHHHHcCCHH
Confidence 44577899999999999999999999999999999999999999998888877666555443222 23456677899998
Q ss_pred hHHHhhcccCccCccccCCCCCc---chhHHHHHH----------HHHHHccCchhHHHHHHHHHHHhhhhhhccchhhH
Q 000134 1201 LMDEYLSGADEEGLLCSSSESNA---SFDMDVAKI----------LQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSY 1267 (2096)
Q Consensus 1201 ~l~~~l~~~~~~gl~~~~~~~~~---~f~~~l~ka----------L~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy 1267 (2096)
.-.+++..+-... +... .....++.+ ......++..+..+.++.+... ..
T Consensus 112 ~A~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~------ 174 (450)
T 2y4t_A 112 EAEDDFKKVLKSN------PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-----CV------ 174 (450)
T ss_dssp HHHHHHHHHHTSC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CT------
T ss_pred HHHHHHHHHHhcC------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC------
Confidence 8776665432210 0111 111111111 1111222222211111111100 00
Q ss_pred HhhhHHHHHhhhhhHHHHHHHhhhccccccccCCCChHHH-HHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCc
Q 000134 1268 TRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKF-SKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGA 1346 (2096)
Q Consensus 1268 ~r~y~~l~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~-~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~ 1346 (2096)
..... ..+.. .-.+..... +-+-.+++++ .. ..
T Consensus 175 -----------------------------------~~~~~~~~l~~-~~~~~g~~~------~A~~~~~~~~-~~---~~ 208 (450)
T 2y4t_A 175 -----------------------------------WDAELRELRAE-CFIKEGEPR------KAISDLKAAS-KL---KN 208 (450)
T ss_dssp -----------------------------------TCHHHHHHHHH-HHHHTTCGG------GGHHHHHHHH-HH---HC
T ss_pred -----------------------------------CChHHHHHHHH-HHHHCCCHH------HHHHHHHHHH-Hh---CC
Confidence 00000 00000 000000000 1111111111 00 11
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChH--H------------HHHHHHHHHcCCchHHHHHHHHHhhcCC
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNV--H------------MEKAKLLWSTRRSDGAIAELQQNLLNKP 1412 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~~~--~------------iE~AKLLW~~g~~~~Ai~~L~~~i~~~~ 1412 (2096)
.....|...+.+..+.|+++.|...+.++....+... . ++.+..+...|+..+|+..++++++..|
T Consensus 209 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p 288 (450)
T 2y4t_A 209 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP 288 (450)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 2356899999999999999999999999877654332 1 3348899999999999999999876321
Q ss_pred cccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHH
Q 000134 1413 VEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFY 1492 (2096)
Q Consensus 1413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~ 1492 (2096)
. .....+.++..+|......|+ .++.+..|+++++..|....+|+.
T Consensus 289 ~--------------------------------~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 289 S--------------------------------IAEYTVRSKERICHCFSKDEK--PVEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp S--------------------------------SHHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred c--------------------------------chHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCcccHHHHHH
Confidence 1 011224566677776665554 889999999999999999999999
Q ss_pred HHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1493 MAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1493 la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
+|..|... | -...|+..|-+++...+++
T Consensus 335 l~~~~~~~--------------~--------~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 335 RAEAYLIE--------------E--------MYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp HHHHHHHT--------------T--------CHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHh--------------c--------CHHHHHHHHHHHHHhCcch
Confidence 99887422 1 1235888888888876653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0037 Score=79.45 Aligned_cols=112 Identities=15% Similarity=0.175 Sum_probs=77.8
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
.....|...+.+..+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++++++..|.
T Consensus 308 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----------- 376 (537)
T 3fp2_A 308 EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT----------- 376 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------
Confidence 345678888888888888888888888887664 3567778888888888888888888887653210
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y 1496 (2096)
+ +.++..+|......|+ .++.++.|.++++..|.....|+.+|.+
T Consensus 377 --------~-----------------~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 421 (537)
T 3fp2_A 377 --------L-----------------PEVPTFFAEILTDRGD--FDTAIKQYDIAKRLEEVQEKIHVGIGPL 421 (537)
T ss_dssp --------C-----------------THHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHCSSCSSTTHHH
T ss_pred --------C-----------------hHHHHHHHHHHHHhCC--HHHHHHHHHHHHHcCCcchhhHHHHHHH
Confidence 0 1234445555544443 6778888888888887665555544433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0034 Score=79.07 Aligned_cols=92 Identities=8% Similarity=-0.051 Sum_probs=70.0
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHH--hccCC---hhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhcc
Q 000134 1088 DVSFLMEIYSFLDEPDGLSGLARL--HKSLS---LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMC 1162 (2096)
Q Consensus 1088 ~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s---l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LG 1162 (2096)
.+-.+...|...++.+........ ...++ .......+.+.|+|++|..+|+++++..|++......+-.|+..+|
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 87 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLG 87 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHh
Confidence 455677888889999888777542 22333 2234566788999999999999999999999888888889999999
Q ss_pred ChHHHHHHhhhhhccCh
Q 000134 1163 HLQAMVTHVDGLISRIP 1179 (2096)
Q Consensus 1163 q~~~ll~~~~gl~~~~p 1179 (2096)
+++......+......|
T Consensus 88 ~~~~A~~~~~~~~~~~~ 104 (514)
T 2gw1_A 88 KFADAMFDLSVLSLNGD 104 (514)
T ss_dssp CHHHHHHHHHHHHHSSS
T ss_pred hHHHHHHHHHHHHhcCC
Confidence 99988777766554444
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.01 Score=82.50 Aligned_cols=196 Identities=10% Similarity=0.096 Sum_probs=98.7
Q ss_pred ChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccC--CCcchhhHHHHHHHHhh
Q 000134 512 DLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRV--SPSSTKHVISQVFAALI 589 (2096)
Q Consensus 512 ~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~--~~~~l~~ll~~i~~~li 589 (2096)
+....+++.+.++.|++.+|+.+.++.|+++..|..+++..+. ...+..=..++..+... ....+..++..++..++
T Consensus 706 ~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~-~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~ 784 (971)
T 2x1g_F 706 EIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC-APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSF 784 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC-HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999999999999977554 22344444466655431 01124444444444444
Q ss_pred hccccC-----CCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhc
Q 000134 590 PFLERD-----KDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGL 664 (2096)
Q Consensus 590 p~~~~~-----~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l 664 (2096)
..+... .+.| .+++....++..++..+...+ ++ .+.++..-+...+..+
T Consensus 785 ~~l~~~~~~~~~~~p-d~~~~~f~ll~~~l~~~p~~~---------~~----------------s~~~l~~i~~~~~~~l 838 (971)
T 2x1g_F 785 KLFESTPEQNFSNIS-DTMETFFGCLTQIIKKIPQVL---------ED----------------KTLAYDRLVFYAQRGM 838 (971)
T ss_dssp HHHTSCTTTHHHHTH-HHHHHHHHHHHHHHHSSGGGG---------GC----------------TTSCHHHHHHHHHHHH
T ss_pred HHHhcccccCCccCc-hHHHHHHHHHHHHHHhCcHHH---------cC----------------CcccHHHHHHHHHHHc
Confidence 444321 0111 112222222222222222111 11 1122444455555666
Q ss_pred cCCChhHHHHHHHHHHHHHhhc--HHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCcc
Q 000134 665 NHENLNVRYMVVCELSKLLKLK--SEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAV 742 (2096)
Q Consensus 665 ~~en~~Vr~~aL~eL~~~L~~~--~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGal 742 (2096)
.++...+..-+++-|..++... +..++..+.. ....|+..++.+...... .......+++|+.|+..
T Consensus 839 ~~~~~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~-------~g~~l~~~l~~~~~~~~~----~s~~~~~a~~l~~l~~~ 907 (971)
T 2x1g_F 839 TLPESGAIRNSIQFLTHFVMQSRNHAHVTEVVLA-------TGEQTLYTAMMCVGYLTP----RSQVDKFADILLAMNRK 907 (971)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHH-------HHHHHHHHHHHHHHTTSC----GGGGGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-------hHHHHHHHHHHHhcccCC----hhHHHHHHHHHHHHHHH
Confidence 6666666666666666655542 2223333331 234566666555432111 12233456677777766
Q ss_pred Ccc
Q 000134 743 DPA 745 (2096)
Q Consensus 743 Dp~ 745 (2096)
.|.
T Consensus 908 ~~~ 910 (971)
T 2x1g_F 908 YAA 910 (971)
T ss_dssp HHH
T ss_pred CcH
Confidence 664
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=97.70 E-value=0.023 Score=78.77 Aligned_cols=148 Identities=11% Similarity=0.176 Sum_probs=88.8
Q ss_pred ChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccC--CCcchhhHHHHHHHHhh
Q 000134 512 DLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRV--SPSSTKHVISQVFAALI 589 (2096)
Q Consensus 512 ~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~--~~~~l~~ll~~i~~~li 589 (2096)
+......+.+.++.++..+|.+..++.|+++..+.......+. ...++.-..++...... ....+..++..++..++
T Consensus 698 ~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l 776 (963)
T 2x19_B 698 DAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSTIPQ-ASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTL 776 (963)
T ss_dssp CHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHHSCC-HHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHcCCc-cHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999888777654322 23445555566633211 01123333344444444
Q ss_pred hcccc-CCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCC
Q 000134 590 PFLER-DKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHEN 668 (2096)
Q Consensus 590 p~~~~-~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en 668 (2096)
+.+.. ..+.| .+++...+++..++..+...+ ++ .+..+..-+..++..+++..
T Consensus 777 ~~~~~~~~~~p-d~~~~~f~ll~~~~~~~~~~~---------~~----------------~~~~~~~i~~~~~~~l~~~~ 830 (963)
T 2x19_B 777 TLFQQGPRDHP-DIVDSFMQLLAQALKRKPDLF---------LC----------------ERLDVKAVFQCAVLALKFPE 830 (963)
T ss_dssp HHHHHCTTTCH-HHHHHHHHHHHHHHHHCGGGG---------GC----------------TTSCHHHHHHHHHHHTTCSC
T ss_pred HHHhhCcccCc-hHHHHHHHHHHHHHHhCcHHH---------cC----------------CcccHHHHHHHHHHHcCCCC
Confidence 44432 21222 345556666665554333221 01 11124555666777888889
Q ss_pred hhHHHHHHHHHHHHHhhc
Q 000134 669 LNVRYMVVCELSKLLKLK 686 (2096)
Q Consensus 669 ~~Vr~~aL~eL~~~L~~~ 686 (2096)
..|...++.-|..++...
T Consensus 831 ~~~~~~~l~~l~~l~~~~ 848 (963)
T 2x19_B 831 APTVKASCGFFTELLPRC 848 (963)
T ss_dssp HHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999999999988653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0027 Score=76.51 Aligned_cols=114 Identities=13% Similarity=0.096 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
...|...+.+..+.|.++.|...+.++....+ +.+....|.++...|+..+|+..+++++...|
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------- 282 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-------------- 282 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------
Confidence 56788899999999999999999999887653 46788899999999999999999999876211
Q ss_pred cCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch-----------HHHHHHHHh
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW-----------EKGYFYMAK 1495 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~w-----------eK~~~~la~ 1495 (2096)
..+.++..+|......|+ .++.+..|++++++.|.. ..+|+.+|.
T Consensus 283 ----------------------~~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~ 338 (368)
T 1fch_A 283 ----------------------GYIRSRYNLGISCINLGA--HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRL 338 (368)
T ss_dssp ----------------------TCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHH
T ss_pred ----------------------CcHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHH
Confidence 013355666666666664 788899999999999887 788999988
Q ss_pred hhHHH
Q 000134 1496 YCDDV 1500 (2096)
Q Consensus 1496 y~d~l 1500 (2096)
.|..+
T Consensus 339 ~~~~~ 343 (368)
T 1fch_A 339 ALSML 343 (368)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0035 Score=79.72 Aligned_cols=112 Identities=10% Similarity=0.086 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
...|...+.+..+.|.++.|...+.++.... .+.+....|.++...|+..+|+..+++++...|.
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------- 342 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE------------- 342 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-------------
Confidence 5678888888888888888888888877654 3567778888888888888888888887652110
Q ss_pred cCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d 1498 (2096)
+ +.++..+|......|+ .++.++.|+++++..|....+|+.+|..|-
T Consensus 343 ------~-----------------~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 343 ------N-----------------VYPYIQLACLLYKQGK--FTESEAFFNETKLKFPTLPEVPTFFAEILT 389 (537)
T ss_dssp ------C-----------------SHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred ------C-----------------HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 0 1234555555555554 677888888888888888788888877763
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0096 Score=67.28 Aligned_cols=99 Identities=12% Similarity=0.031 Sum_probs=79.1
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
.....|...+.+..+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++.+++..|
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------------ 204 (258)
T 3uq3_A 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP------------ 204 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH------------
Confidence 356678999999999999999999999988765 356788899999999999999999999876321
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQ 1483 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~ 1483 (2096)
..+.++..+|......|+ .++....|++++++.
T Consensus 205 ------------------------~~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 205 ------------------------NFVRAYIRKATAQIAVKE--YASALETLDAARTKD 237 (258)
T ss_dssp ------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhC
Confidence 013456667776666664 778888999999988
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.011 Score=69.51 Aligned_cols=61 Identities=11% Similarity=0.003 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
...|...+.+..+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++++++
T Consensus 236 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 236 EPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 5679999999999999999999999988764 467888999999999999999999998765
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0038 Score=73.41 Aligned_cols=256 Identities=11% Similarity=-0.010 Sum_probs=154.7
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCC
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~ 1198 (2096)
.+...+...|+|++|..+|+++++..|++......+-.|+...|+++....+.+......|.....+. ....+....|+
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~la~~~~~~~~ 104 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA-ALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHH-HHHHHHHHcCC
Confidence 44556677888888888888888888888877777888888888888877776665554454322222 23455567777
Q ss_pred hhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHH-HH-
Q 000134 1199 WDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFI-VK- 1276 (2096)
Q Consensus 1199 Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l-~k- 1276 (2096)
|+.-.+++...-... +........+...+ ..... .+ .+ -.
T Consensus 105 ~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~------------------------------~~~~~-~~-~~~~~~ 146 (327)
T 3cv0_A 105 ANAALASLRAWLLSQ------PQYEQLGSVNLQAD------------------------------VDIDD-LN-VQSEDF 146 (327)
T ss_dssp HHHHHHHHHHHHHTS------TTTTTC----------------------------------------------------C
T ss_pred HHHHHHHHHHHHHhC------CccHHHHHHHhHHH------------------------------HHHHH-HH-HHHHhH
Confidence 776555443321100 00000000000000 00000 00 00 00
Q ss_pred -hhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHH
Q 000134 1277 -LHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQY 1355 (2096)
Q Consensus 1277 -LH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~ 1355 (2096)
+....+.+++...+ +.=+.. . ......|...
T Consensus 147 ~~~~~~~~~~A~~~~------------------------~~~~~~-------------------~-----~~~~~~~~~l 178 (327)
T 3cv0_A 147 FFAAPNEYRECRTLL------------------------HAALEM-------------------N-----PNDAQLHASL 178 (327)
T ss_dssp CTTSHHHHHHHHHHH------------------------HHHHHH-------------------S-----TTCHHHHHHH
T ss_pred HHHHcccHHHHHHHH------------------------HHHHhh-------------------C-----CCCHHHHHHH
Confidence 01111111111111 110000 0 1124578888
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCC
Q 000134 1356 AKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLN 1433 (2096)
Q Consensus 1356 AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 1433 (2096)
+.+..+.|+++.|...+.++....+ +.+....|.++...|+..+|+..++++++..|.
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------------------- 238 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-------------------- 238 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------------------
Confidence 9999999999999999999877653 567888999999999999999999998763110
Q ss_pred CCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc------------hHHHHHHHHhhhHH
Q 000134 1434 PLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM------------WEKGYFYMAKYCDD 1499 (2096)
Q Consensus 1434 ~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~------------weK~~~~la~y~d~ 1499 (2096)
.+.++..+|......|+ .++..+.|+++++..|. ...+|+.+|..|.+
T Consensus 239 ----------------~~~~~~~l~~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 298 (327)
T 3cv0_A 239 ----------------YVRVMYNMAVSYSNMSQ--YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNV 298 (327)
T ss_dssp ----------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHH
T ss_pred ----------------CHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHh
Confidence 02345556665555554 78889999999999998 78888888887654
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=97.53 E-value=0.22 Score=65.28 Aligned_cols=461 Identities=13% Similarity=0.131 Sum_probs=234.6
Q ss_pred HHHHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhc
Q 000134 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLF 227 (2096)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~ 227 (2096)
+..-+.++ ......+++-.+...+..+++..++...+ -+..+..-|.|++..+|-.|-+++..+.
T Consensus 50 ~~~~vi~l-~~s~~~~~Krl~yl~l~~~~~~~~e~~~l-----~~n~l~kdL~~~n~~ir~~AL~~L~~i~--------- 114 (591)
T 2vgl_B 50 LFPDVVNC-MQTDNLELKKLVYLYLMNYAKSQPDMAIM-----AVNSFVKDCEDPNPLIRALAVRTMGCIR--------- 114 (591)
T ss_dssp GHHHHHHT-TSSSCHHHHHHHHHHHHHHHHHSHHHHHT-----THHHHGGGSSSSSHHHHHHHHHHHHTCC---------
T ss_pred HHHHHHHH-hCCCCHHHHHHHHHHHHHHcccCchHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCC---------
Confidence 44445554 34455666666666776666543322111 1234455579999999999988887743
Q ss_pred cCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHhhCCCCcchHHHHHHHH
Q 000134 228 LDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDNPHVTVRMNASRLI 305 (2096)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~~n~~v~~~A~~~i 305 (2096)
+..-.+.++..+.+.+. -+||.|+.+...+++.|.. ...|... -.+=.|.+.|..+|+.|+..|..-+
T Consensus 115 ------~~~~~~~l~~~l~~~L~-d~~~~VRk~A~~al~~i~~---~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL 184 (591)
T 2vgl_B 115 ------VDKITEYLCEPLRKCLK-DEDPYVRKTAAVCVAKLHD---INAQMVEDQGFLDSLRDLIADSNPMVVANAVAAL 184 (591)
T ss_dssp ------SGGGHHHHHHHHHHHSS-CSCHHHHHHHHHHHHHHHH---SSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHh---hChhhcccccHHHHHHHHhCCCChhHHHHHHHHH
Confidence 11122445666777665 5689999999999999955 2345443 2345688889999999999999999
Q ss_pred HHHhhhhccc-ccccccchhhhhhhhhhHHHHHHhc-CchHHHHHHHHHHhCCChHHHHHhhcccccchhhhccccChhH
Q 000134 306 RKSCFFHLKG-GCELLVSKAVLICNELFDYLSVRLA-SRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDNDQA 383 (2096)
Q Consensus 306 ~~l~~~~~~~-~~~l~~~~~~~~~~~l~~~~~~~l~-~rp~~~~~~~e~llg~~~~~fL~~~~~~~LP~LVl~~~~~~~~ 383 (2096)
.++|...... .+.+ ....+..+++.+. ..|..-..+.+ +|.... | +.+...
T Consensus 185 ~~i~~~~~~~~~~~l--------~~~~~~~Ll~~l~~~~~~~q~~il~---------~l~~l~----~------~~~~~~ 237 (591)
T 2vgl_B 185 SEISESHPNSNLLDL--------NPQNINKLLTALNECTEWGQIFILD---------CLSNYN----P------KDDREA 237 (591)
T ss_dssp HHHTTSCCSCCSCCC--------HHHHHHHHHHHHHHCCHHHHHHHHH---------HHHTSC----C------CSHHHH
T ss_pred HHHHhhCCCccchhc--------cHHHHHHHHHcCCCCCchHHHHHHH---------HHHHhC----C------CChHHH
Confidence 9998765321 0111 1122333443332 11211111100 111110 1 111011
Q ss_pred HHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccHHHHHHHHHHHhhhc-----CCC-hHHHHHHhhHHHHHHHHHhhc
Q 000134 384 VNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRLLSALEFYCIQT-----GSD-NQEIFAAALPALLDELICFVD 457 (2096)
Q Consensus 384 ~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~~~~~~~l~~~~~~~-----~~~-~~~~~~~~~~~~l~eLl~~~~ 457 (2096)
...+..+.. ++...+..-..++...+.... ..+ .+.++....+.++ . +.
T Consensus 238 ~~~l~~l~~--------------------~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~-~----L~ 292 (591)
T 2vgl_B 238 QSICERVTP--------------------RLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLV-T----LL 292 (591)
T ss_dssp HHHHHHHTT--------------------CSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHH-H----HT
T ss_pred HHHHHHHHH--------------------HHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH-H----Hh
Confidence 111111111 111222333334444333322 111 2222333333333 2 22
Q ss_pred CCCchhHhhhhcchhHHHHHHhhhcc-CCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhcccccc
Q 000134 458 GGDSDEINERLNRVPRVIRKVSTVLT-GNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTT 536 (2096)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~ 536 (2096)
.++.+ .+. -++..+..+.. .++.+..++. .|- +.. .++...|++++.-+.. ++...
T Consensus 293 ~~d~~--vr~-----~aL~~l~~i~~~~p~~~~~~~~--------~~~-~~~-~d~~~Ir~~al~~L~~---l~~~~--- 349 (591)
T 2vgl_B 293 SGEPE--VQY-----VALRNINLIVQKRPEILKQEIK--------VFF-VKY-NDPIYVKLEKLDIMIR---LASQA--- 349 (591)
T ss_dssp TSCHH--HHH-----HHHHHHHHHHHHCCSTTTTCTT--------TTS-CCT-TSCHHHHHHHHHHHHH---TCCSS---
T ss_pred cCCcc--HHH-----HHHHHHHHHHHhChHHHHHHHH--------hhe-ecc-CChHHHHHHHHHHHHH---HCChh---
Confidence 23322 111 12333333222 2332222211 110 111 3457788888754443 33331
Q ss_pred chhhHHHHHHHHhcC--CCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccccCCCCchhhHHHHHHHHHHHH
Q 000134 537 YVPKILVLLMHAINK--ESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLV 614 (2096)
Q Consensus 537 ~~pqI~a~L~~aL~~--~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li 614 (2096)
-...|+.-|...+.. ++++..++.+-..+... ..+....++..++.++... .....+.+...+..|+
T Consensus 350 nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~--------~~~~~~~~v~~Ll~ll~~~---~~~v~~e~i~~l~~ii 418 (591)
T 2vgl_B 350 NIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIK--------VEQSAERCVSTLLDLIQTK---VNYVVQEAIVVIRDIF 418 (591)
T ss_dssp THHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------ChhHHHHHHHHHHHHHccc---chHHHHHHHHHHHHHH
Confidence 134455555555543 34555544333333322 2233455666677777522 2234566666777777
Q ss_pred HHhHH-------HHHhhcccCCCCCChhhhH-HHHHHHHHhcCC-CCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhh
Q 000134 615 LKNRA-------ILKQHIHEFPLLPSIAALT-EVNKAIQEARGP-MTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKL 685 (2096)
Q Consensus 615 ~~n~~-------~L~~~i~~lp~Lp~ip~l~-~v~~~l~~~r~~-~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~ 685 (2096)
.++.+ .|.+.+.+ .. .|+.. .+--.+-++... .+..+.++.|+++...|+..|+.++|+.+.++..+
T Consensus 419 ~~~p~~~~~~v~~L~~~l~~---~~-~~~~~~~~~wilGey~~~~~~~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~ 494 (591)
T 2vgl_B 419 RKYPNKYESIIATLCENLDS---LD-EPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLK 494 (591)
T ss_dssp HHSCSSCCTTHHHHHHTTTT---CC-SHHHHHHHHHHHHTTCTTCTTHHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTT
T ss_pred HHCcchHHHHHHHHHHHHHh---cc-CHHHHHHHHHHHHcccccccCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhc
Confidence 66542 22222222 11 23221 122223344333 24678899999999999999999999999998765
Q ss_pred cHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCc
Q 000134 686 KSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGA 741 (2096)
Q Consensus 686 ~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGa 741 (2096)
..+ ....++..+|..|...+ .+.+++..|.+.++++..
T Consensus 495 ~p~---------------~~~~~i~~ll~~~~~d~---~d~evrdRA~~y~~ll~~ 532 (591)
T 2vgl_B 495 KPS---------------ETQELVQQVLSLATQDS---DNPDLRDRGYIYWRLLST 532 (591)
T ss_dssp CCS---------------TTHHHHHHHHHHHHTTC---CCHHHHHHHHHHHTTTTT
T ss_pred Cch---------------HHHHHHHHHHHHhhhcC---CChHHHHHHHHHHHHHCc
Confidence 421 12356677777765322 236899999999999965
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0041 Score=73.14 Aligned_cols=62 Identities=15% Similarity=0.031 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLN 1410 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~ 1410 (2096)
...|...+.+..+.|+++.|...+.++.... .+.+....|.++...|+..+|+..+++++..
T Consensus 206 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 206 AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4678999999999999999999999987765 3567888999999999999999999998763
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.005 Score=74.47 Aligned_cols=256 Identities=12% Similarity=-0.015 Sum_probs=149.4
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCC
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~ 1198 (2096)
.....+...|++++|..+|+++++..|++......+-.|+..+|+++..+...+......|+....+. ....+.+..|+
T Consensus 70 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~l~~~~~~~g~ 148 (365)
T 4eqf_A 70 EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALM-ALAVSYTNTSH 148 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH-HHHHHHHcccc
Confidence 34556678888888888888888888888888888888888888888877777665554454332222 23345567777
Q ss_pred hhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhh
Q 000134 1199 WDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLH 1278 (2096)
Q Consensus 1199 Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH 1278 (2096)
++.-.+++...-. +. .+.......+ . .....+.. .-.-+.
T Consensus 149 ~~~A~~~~~~al~------------------------~~-p~~~~~~~~~-------~-----~~~~~~~~---l~~~~~ 188 (365)
T 4eqf_A 149 QQDACEALKNWIK------------------------QN-PKYKYLVKNK-------K-----GSPGLTRR---MSKSPV 188 (365)
T ss_dssp HHHHHHHHHHHHH------------------------HC-HHHHCC----------------------------------
T ss_pred HHHHHHHHHHHHH------------------------hC-ccchHHHhhh-------c-----cchHHHHH---HHHHHh
Confidence 7665443322110 00 0000000000 0 00000000 000000
Q ss_pred hhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHH
Q 000134 1279 LLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKL 1358 (2096)
Q Consensus 1279 ~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~Akl 1358 (2096)
...+.+++...+ +.=+.. .+.. .....|...+.+
T Consensus 189 ~~g~~~~A~~~~------------------------~~al~~-------------------~p~~---~~~~~~~~l~~~ 222 (365)
T 4eqf_A 189 DSSVLEGVKELY------------------------LEAAHQ-------------------NGDM---IDPDLQTGLGVL 222 (365)
T ss_dssp CCHHHHHHHHHH------------------------HHHHHH-------------------SCSS---CCHHHHHHHHHH
T ss_pred hhhhHHHHHHHH------------------------HHHHHh-------------------CcCc---cCHHHHHHHHHH
Confidence 111222222211 100000 0100 124568888899
Q ss_pred HHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCC
Q 000134 1359 CRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLP 1436 (2096)
Q Consensus 1359 ARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1436 (2096)
..+.|+++.|...+.++.... .+.+....+.++...|+..+|+..++++++..|.
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~----------------------- 279 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG----------------------- 279 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------------
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----------------------
Confidence 999999999999999887764 3467788899999999999999999988763110
Q ss_pred cccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch------------HHHHHHHHhhhHH
Q 000134 1437 VLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW------------EKGYFYMAKYCDD 1499 (2096)
Q Consensus 1437 ~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~w------------eK~~~~la~y~d~ 1499 (2096)
.+.++..+|.-....|+ .++.+..|++|+++.|+. ...|..+|..+..
T Consensus 280 -------------~~~~~~~l~~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (365)
T 4eqf_A 280 -------------FIRSRYNLGISCINLGA--YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSL 339 (365)
T ss_dssp -------------CHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHH
T ss_pred -------------chHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHH
Confidence 13456666666655665 678888999999988762 4556666665543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.013 Score=67.32 Aligned_cols=135 Identities=15% Similarity=0.062 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccccc
Q 000134 1350 NCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2096)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~ 1427 (2096)
..|...+.+..+.|.++.|...+.++.... .+.+....+...+..++..+|+..++++++..|.
T Consensus 109 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-------------- 174 (272)
T 3u4t_A 109 DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN-------------- 174 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc--------------
Confidence 458888889999999999999999987764 3456777786777788999999999998763211
Q ss_pred CCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhc---cc-----hHHHHHHHHhhhH
Q 000134 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQ-KEDVITLYSRVRELQ---PM-----WEKGYFYMAKYCD 1498 (2096)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~-~~~i~~~Y~~a~~l~---~~-----weK~~~~la~y~d 1498 (2096)
...++..+|.-....+... .++.+..|.+++++. +. +..+|+.+|.+|.
T Consensus 175 ----------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 232 (272)
T 3u4t_A 175 ----------------------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT 232 (272)
T ss_dssp ----------------------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH
T ss_pred ----------------------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 0234444555444444322 455777888888876 43 3467888888774
Q ss_pred HHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1499 DVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1499 ~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
.. | -...|+..|-+++...+++
T Consensus 233 ~~--------------~--------~~~~A~~~~~~al~~~p~~ 254 (272)
T 3u4t_A 233 IN--------------R--------DKVKADAAWKNILALDPTN 254 (272)
T ss_dssp HT--------------T--------CHHHHHHHHHHHHHHCTTC
T ss_pred Hc--------------C--------CHHHHHHHHHHHHhcCccH
Confidence 32 0 1236888888888776553
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0022 Score=74.16 Aligned_cols=177 Identities=16% Similarity=0.210 Sum_probs=128.8
Q ss_pred CCCChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhc-CC--CcchhhhHHHHHHHHHhccCCCcchhhHHHHHH
Q 000134 509 HAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAIN-KE--SLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVF 585 (2096)
Q Consensus 509 ~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~-~~--~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~ 585 (2096)
++++..+|+.++..|+.+++-+++.......+|+..|...|. .+ ..+..++.|-..+...+. ..+.+++..++
T Consensus 25 ~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~----~~~~~~~~~il 100 (242)
T 2qk2_A 25 EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA----KRFSNYASACV 100 (242)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG----GGGHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh----hhHHHHHHHHH
Confidence 346788899999999999987655455556889999999995 43 467799999999998885 36888889888
Q ss_pred HHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhcc
Q 000134 586 AALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLN 665 (2096)
Q Consensus 586 ~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~ 665 (2096)
..++..+. +....+++.+...+..++. ..++..-+..+...++
T Consensus 101 p~ll~~l~---d~~~~vr~~a~~aL~~~~~----------------------------------~~~~~~ll~~l~~~l~ 143 (242)
T 2qk2_A 101 PSLLEKFK---EKKPNVVTALREAIDAIYA----------------------------------STSLEAQQESIVESLS 143 (242)
T ss_dssp HHHHHGGG---CCCHHHHHHHHHHHHHHHT----------------------------------TSCHHHHHHHHHHHTT
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHHH----------------------------------cCCHHHHHHHHHHHHc
Confidence 88888775 3333456666666665533 1234455667788899
Q ss_pred CCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccC
Q 000134 666 HENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALG 740 (2096)
Q Consensus 666 ~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IG 740 (2096)
|.|+.||..++.-|...+.....+ .. ..+.+..++..|+.+..+.+ .+++..+.+|||.|+
T Consensus 144 ~~~~~vr~~~l~~l~~~l~~~~~~--------~~-~~~~l~~l~p~l~~~l~D~~-----~~VR~~A~~~l~~l~ 204 (242)
T 2qk2_A 144 NKNPSVKSETALFIARALTRTQPT--------AL-NKKLLKLLTTSLVKTLNEPD-----PTVRDSSAEALGTLI 204 (242)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCCGG--------GC-CHHHHHHHHHHHHHHHTSSC-----HHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHcCCC--------Cc-cHHHHHHHHHHHHHHhcCCC-----hHHHHHHHHHHHHHH
Confidence 999999999999999887664211 00 11346677777777665432 589999999999966
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.073 Score=66.43 Aligned_cols=401 Identities=13% Similarity=0.106 Sum_probs=194.9
Q ss_pred HhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchh-hH-HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhccc
Q 000134 198 LLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSN-EL-KLLDVIKLAFTAADDPLILETLLESTAELMMAVDVH 275 (2096)
Q Consensus 198 ~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~ 275 (2096)
.+.+++..+|..+...+..++... .+...... +. .++..+-+.+...+|+.++...+..++.|.......
T Consensus 28 ~l~s~~~~~r~~A~~~L~~l~~~~--------~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 99 (450)
T 2jdq_A 28 MIFSKSPEQQLSATQKFRKLLSKE--------PNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQ 99 (450)
T ss_dssp HHHSSCHHHHHHHHHHHHHHHHSS--------SSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHhcCC--------CCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHH
Confidence 348999999999999999865210 00010111 11 466777776766668999999999999985421111
Q ss_pred chhH--HHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcC--chHHHHHHHH
Q 000134 276 SQHF--LFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLAS--RPIMVREFAE 351 (2096)
Q Consensus 276 ~e~~--~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~--rp~~~~~~~e 351 (2096)
...+ .-++=.|+..|.++++.+|..|..-+.+++...... +..-+...+.+.+++-+.. .+.+.+..+
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~-------~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~- 171 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMC-------RDYVLDCNILPPLLQLFSKQNRLTMTRNAV- 171 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH-------HHHHHHTTCHHHHHHHTTSCCCHHHHHHHH-
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHH-------HHHHHHCCCHHHHHHHhcCCCCHHHHHHHH-
Confidence 1111 124455888899999999999999999997643110 0000111223444444442 122222211
Q ss_pred HHhCCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHc-CCCchhHHhhhHHHHHHHHhccccHH---HHHHHHH
Q 000134 352 AAFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCL-NTDMVPLIVTWIPKVLAFALHQADER---RLLSALE 427 (2096)
Q Consensus 352 ~llg~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~-~~~~~~l~~~~~~~Ila~ll~~~~~~---~~~~~l~ 427 (2096)
..+..|+... ...-..++..-+|. |..++...+++ .+..+|.
T Consensus 172 ---------------------------------~~L~~l~~~~~~~~~~~~~~~~l~~-L~~~l~~~~~~v~~~a~~~L~ 217 (450)
T 2jdq_A 172 ---------------------------------WALSNLCRGKSPPPEFAKVSPCLNV-LSWLLFVSDTDVLADACWALS 217 (450)
T ss_dssp ---------------------------------HHHHHHHCCSSSCCCGGGTGGGHHH-HHHHTTCCCHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHhCCCCCCCCHHHHHHHHHH-HHHHHccCCHHHHHHHHHHHH
Confidence 1122221110 00001111111222 22222222322 2333444
Q ss_pred HHhhhcCCChHHHHH-HhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhh-hhHHHHHHHHHHhhh
Q 000134 428 FYCIQTGSDNQEIFA-AALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPG-FLRNHFVGLLNSIDR 505 (2096)
Q Consensus 428 ~~~~~~~~~~~~~~~-~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-fl~~~~LGil~~~~~ 505 (2096)
.+........+.+.. ..+|.++ + .+...+... + ..++..++.+..+.+.... ++.. |++..+-.
T Consensus 218 ~l~~~~~~~~~~~~~~~~i~~L~-~---ll~~~~~~v--~-----~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~ 283 (450)
T 2jdq_A 218 YLSDGPNDKIQAVIDAGVCRRLV-E---LLMHNDYKV--V-----SPALRAVGNIVTGDDIQTQVILNC---SALQSLLH 283 (450)
T ss_dssp HHTSSSHHHHHHHHHTTTHHHHH-H---HTTCSCHHH--H-----HHHHHHHHHHTTSCHHHHHHHHTT---THHHHHHH
T ss_pred HHHCCCcHHHHHHHHcCcHHHHH-H---HHCCCchhH--H-----HHHHHHHHHHhhCChHHHHHHHHC---ccHHHHHH
Confidence 443211101112222 2334444 2 333333211 1 2233334444344332221 1221 55555543
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHhcccc-----ccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhH
Q 000134 506 KMLHAEDLSLQKQALKRIEILIEMIGSHL-----TTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHV 580 (2096)
Q Consensus 506 ~l~~~~~~~~k~~~l~sl~~li~l~g~~v-----~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~l 580 (2096)
.+ ..++...|+.++.+|+.+..-....+ ..+.|.++..|.+. .++++..++.+-..+...- +++.+..+
T Consensus 284 ll-~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~---~~~~~~~l 357 (450)
T 2jdq_A 284 LL-SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA--EFRTRKEAAWAITNATSGG---SAEQIKYL 357 (450)
T ss_dssp HT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHC---CHHHHHHH
T ss_pred HH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCC---CHHHHHHH
Confidence 33 34467788899999988764111111 24566666666653 4556666666655555532 23344444
Q ss_pred HH-HHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHH
Q 000134 581 IS-QVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLA 659 (2096)
Q Consensus 581 l~-~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~ 659 (2096)
++ .++..|+.+++.. ....+..+...|..|+......-.. .. ..++ .+...+.+..+ .+.|
T Consensus 358 ~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~~~~~~~--~~----~~~~---~~~~~l~~~g~----~~~l-- 419 (450)
T 2jdq_A 358 VELGCIKPLCDLLTVM---DSKIVQVALNGLENILRLGEQEAKR--NG----TGIN---PYCALIEEAYG----LDKI-- 419 (450)
T ss_dssp HHHTCHHHHHHGGGSS---CHHHHHHHHHHHHHHHHHHHHHHHH--SC----SCCC---HHHHHHHHHHC----HHHH--
T ss_pred HHCCCHHHHHHHhcCC---CHHHHHHHHHHHHHHHHhchhhhhc--cc----cchh---HHHHHHHHcCc----HHHH--
Confidence 43 3566666766532 3356788888888887654322110 00 0111 12223333322 1222
Q ss_pred HHhhccCCChhHHHHHHHHHHHHHhhcH
Q 000134 660 AVDGLNHENLNVRYMVVCELSKLLKLKS 687 (2096)
Q Consensus 660 ~~~~l~~en~~Vr~~aL~eL~~~L~~~~ 687 (2096)
..-..|+|..|+..|+.-|..++....
T Consensus 420 -~~l~~~~~~~v~~~a~~~l~~~~~~~~ 446 (450)
T 2jdq_A 420 -EFLQSHENQEIYQKAFDLIEHYFGTED 446 (450)
T ss_dssp -HHHHCHHHHHHHHHHHHHHHHHHCCC-
T ss_pred -HHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 333567788999999998888875443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0049 Score=69.25 Aligned_cols=109 Identities=10% Similarity=0.054 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccC
Q 000134 1351 CWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLS 1428 (2096)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~ 1428 (2096)
.|...+.+..+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++++++..+
T Consensus 127 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------------- 190 (243)
T 2q7f_A 127 LFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP---------------- 190 (243)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT----------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----------------
Confidence 46777888888899999988888887664 356777888999999999999999988765211
Q ss_pred CCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000134 1429 LVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2096)
Q Consensus 1429 ~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~ 1497 (2096)
..+.++..+|......|+ .++..+.|+++.++.|....+++.++...
T Consensus 191 --------------------~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 191 --------------------GHADAFYNAGVTYAYKEN--REKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp --------------------TCHHHHHHHHHHHHHTTC--TTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred --------------------ccHHHHHHHHHHHHHccC--HHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 013356666766666665 56778889999999998888888776654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.032 Score=68.33 Aligned_cols=109 Identities=11% Similarity=0.024 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC----C----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG----A----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGST 1419 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~----~----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~ 1419 (2096)
.+.+|...+.+..+.|+++.|...+.++.... . ..+....|.+++..|+..+|+..+++++...+
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------- 334 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQ------- 334 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------
Confidence 45678999999999999999999888776542 2 34677889999999999999999999875210
Q ss_pred ccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHH
Q 000134 1420 AISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEK 1488 (2096)
Q Consensus 1420 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK 1488 (2096)
........+.++..+|+.....|+ .++....|++|.++.+....
T Consensus 335 -----------------------~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~ 378 (411)
T 4a1s_A 335 -----------------------ELGDRIGEARACWSLGNAHSAIGG--HERALKYAEQHLQLAXXXXX 378 (411)
T ss_dssp -----------------------HHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCCHHHH
T ss_pred -----------------------HCCChHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHhhccc
Confidence 001123457788888988877775 78899999999999886643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.052 Score=65.73 Aligned_cols=122 Identities=9% Similarity=0.036 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGS 1418 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~----~~----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~ 1418 (2096)
..+.+|...+.+..+.|.++.|...+.++... +. ..+....|.++...|+..+|+..++++++..+
T Consensus 225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~------ 298 (406)
T 3sf4_A 225 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ------ 298 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH------
Confidence 44668899999999999999999988887644 22 34667889999999999999999999875210
Q ss_pred cccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch------HHHHHH
Q 000134 1419 TAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW------EKGYFY 1492 (2096)
Q Consensus 1419 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~w------eK~~~~ 1492 (2096)
........+.++..+|......|+ .++..+.|++|.++.+.. ..++..
T Consensus 299 ------------------------~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 352 (406)
T 3sf4_A 299 ------------------------ELNDRIGEGRACWSLGNAYTALGN--HDQAMHFAEKHLEISREVGDKSGELTARLN 352 (406)
T ss_dssp ------------------------HTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------------hcCCcHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCCcchhHHHHH
Confidence 000123446778888888777775 788899999998885543 456667
Q ss_pred HHhhhHHH
Q 000134 1493 MAKYCDDV 1500 (2096)
Q Consensus 1493 la~y~d~l 1500 (2096)
+|..|..+
T Consensus 353 l~~~~~~~ 360 (406)
T 3sf4_A 353 LSDLQMVL 360 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77666443
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.052 Score=69.96 Aligned_cols=400 Identities=11% Similarity=0.082 Sum_probs=194.9
Q ss_pred hcccHHHHHHHHHHHhHhhhh---hhhhhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccc
Q 000134 200 LNKRKAIRDAFCTQIGYFLQD---TVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHS 276 (2096)
Q Consensus 200 ~~~~r~vR~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~ 276 (2096)
.+++..+|..++..+..++.. +-...+. ...++..+.+.+...+|+.+++..+.+++.|........
T Consensus 97 ~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~----------~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 97 NSDDMQEQLSATVKFRQILSREHRPPIDVVI----------QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp SCSSHHHHHHHHHHHHHHTCCSSSCSHHHHH----------HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCCccHHHHH----------HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 788899999999999887621 1111111 123455666666655689999999999999844211111
Q ss_pred hhH--HHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcCc-hHHHHHHHHHH
Q 000134 277 QHF--LFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASR-PIMVREFAEAA 353 (2096)
Q Consensus 277 e~~--~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~r-p~~~~~~~e~l 353 (2096)
..+ .-++-.|+..|.++++-++..|..-|.++|...... +..-+.....+.++.-+... +.+.+..
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~-------~~~~~~~~~l~~L~~ll~~~~~~v~~~a---- 235 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY-------RDYVLQCNAMEPILGLFNSNKPSLIRTA---- 235 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH-------HHHHHHTTCHHHHHHGGGSCCHHHHHHH----
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccc-------hHHHHHcCcHHHHHHHhccCCHHHHHHH----
Confidence 111 112445777778899999999999999997542110 00000111223333333321 1111111
Q ss_pred hCCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccHHH---HHHHHHHHh
Q 000134 354 FGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERR---LLSALEFYC 430 (2096)
Q Consensus 354 lg~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~~~---~~~~l~~~~ 430 (2096)
...|..|+...+..............|..++...+++. +..+|..+.
T Consensus 236 ------------------------------~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 236 ------------------------------TWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLS 285 (530)
T ss_dssp ------------------------------HHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 12222222211011112222333333444444444333 334444443
Q ss_pred hhcCCChHHHHH-HhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChh-hhhHHHHHHHHHHhhhhhc
Q 000134 431 IQTGSDNQEIFA-AALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLP-GFLRNHFVGLLNSIDRKML 508 (2096)
Q Consensus 431 ~~~~~~~~~~~~-~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~fl~~~~LGil~~~~~~l~ 508 (2096)
.......+.++. ..+|.++ + .+..++... + ..++..++.+..+.+... .++.. |++..+-..+
T Consensus 286 ~~~~~~~~~~~~~~~v~~Lv-~---lL~~~~~~v--~-----~~a~~~L~~l~~~~~~~~~~~~~~---~~l~~L~~lL- 350 (530)
T 1wa5_B 286 DGPQEAIQAVIDVRIPKRLV-E---LLSHESTLV--Q-----TPALRAVGNIVTGNDLQTQVVINA---GVLPALRLLL- 350 (530)
T ss_dssp SSCHHHHHHHHHTTCHHHHH-H---GGGCSCHHH--H-----HHHHHHHHHHTTSCHHHHHHHHHT---THHHHHHHHT-
T ss_pred CCCHHHHHHHHhcCcHHHHH-H---HHCCCChhh--H-----HHHHHHHHHHHcCCHHHHHHHHHc---chHHHHHHHH-
Confidence 221111122232 2233333 2 344433221 1 223444444444433222 22322 4444444333
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcccc-----ccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHH-
Q 000134 509 HAEDLSLQKQALKRIEILIEMIGSHL-----TTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVIS- 582 (2096)
Q Consensus 509 ~~~~~~~k~~~l~sl~~li~l~g~~v-----~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~- 582 (2096)
...+...++.++.+|+.+..-...++ ..+.|.++..|.+ ..++++..++.+-..+...-.. .|+....++.
T Consensus 351 ~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~--~~~~v~~~a~~aL~~l~~~~~~-~~~~~~~l~~~ 427 (530)
T 1wa5_B 351 SSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV--AEYKTKKEACWAISNASSGGLQ-RPDIIRYLVSQ 427 (530)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHTTT-CTHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHC
Confidence 34467788999999988764111122 2466777777764 2456666766666556554210 0123333332
Q ss_pred HHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHh
Q 000134 583 QVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVD 662 (2096)
Q Consensus 583 ~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~ 662 (2096)
.++..|+.++.. .....+..+...|..|+............ . ...+...+.+.. . +..+..
T Consensus 428 ~~l~~L~~ll~~---~~~~v~~~al~aL~~l~~~~~~~~~~~~~------~---~~~~~~~l~~~g----~---~~~L~~ 488 (530)
T 1wa5_B 428 GCIKPLCDLLEI---ADNRIIEVTLDALENILKMGEADKEARGL------N---INENADFIEKAG----G---MEKIFN 488 (530)
T ss_dssp TCHHHHHHHTTT---CCHHHHHHHHHHHHHHHHHHHHHHHHHTC------S---SCHHHHHHHHTT----H---HHHHHG
T ss_pred CCHHHHHHHHhC---CCHHHHHHHHHHHHHHHHhhhhhhhcccc------c---ccHHHHHHHHcC----c---HHHHHH
Confidence 244555555542 23456788888888887654432211000 0 111222222211 1 233344
Q ss_pred hccCCChhHHHHHHHHHHHHHhhcH
Q 000134 663 GLNHENLNVRYMVVCELSKLLKLKS 687 (2096)
Q Consensus 663 ~l~~en~~Vr~~aL~eL~~~L~~~~ 687 (2096)
-++|+|..|+..|..-|..++....
T Consensus 489 L~~~~~~~v~~~a~~il~~~~~~~~ 513 (530)
T 1wa5_B 489 CQQNENDKIYEKAYKIIETYFGEEE 513 (530)
T ss_dssp GGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred HHcCCCHHHHHHHHHHHHHHCCccc
Confidence 5678999999999999988886543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.02 Score=69.18 Aligned_cols=240 Identities=12% Similarity=0.089 Sum_probs=140.3
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHH
Q 000134 1043 KVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELL 1122 (2096)
Q Consensus 1043 ~~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil 1122 (2096)
...++....+-|.|..|+.+++..+... | +.++....+ ..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-----p-----------------------~~~~~~~~l------------g~ 107 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-----P-----------------------GDAEAWQFL------------GI 107 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-----T-----------------------TCHHHHHHH------------HH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-----c-----------------------CCHHHHHHH------------HH
Confidence 5578899999999999999999987642 1 111222222 23
Q ss_pred HhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhhH
Q 000134 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLM 1202 (2096)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l 1202 (2096)
.|...|++++|..+|+++++..|++......+-.|+..+|+++..+.+.+......|+....+...+.
T Consensus 108 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~------------ 175 (365)
T 4eqf_A 108 TQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKG------------ 175 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------------------
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhcc------------
Confidence 45678999999999999999999999988899999999999998887776655544433221111100
Q ss_pred HHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHH-hhhhh
Q 000134 1203 DEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVK-LHLLQ 1281 (2096)
Q Consensus 1203 ~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~k-LH~L~ 1281 (2096)
.......+|.++ ...++..+..+.++++... ...... ...+-.+-. +....
T Consensus 176 -------------------~~~~~~~l~~~~--~~~g~~~~A~~~~~~al~~-----~p~~~~--~~~~~~l~~~~~~~g 227 (365)
T 4eqf_A 176 -------------------SPGLTRRMSKSP--VDSSVLEGVKELYLEAAHQ-----NGDMID--PDLQTGLGVLFHLSG 227 (365)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHHHH-----SCSSCC--HHHHHHHHHHHHHHT
T ss_pred -------------------chHHHHHHHHHH--hhhhhHHHHHHHHHHHHHh-----CcCccC--HHHHHHHHHHHHHCC
Confidence 000111122121 1122222222222222111 000000 001111110 11111
Q ss_pred HHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHH
Q 000134 1282 ELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRL 1361 (2096)
Q Consensus 1282 ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklARK 1361 (2096)
+.+++...+ +.=+.. . +.....|...+.+..+
T Consensus 228 ~~~~A~~~~------------------------~~al~~-------------------~-----p~~~~~~~~l~~~~~~ 259 (365)
T 4eqf_A 228 EFNRAIDAF------------------------NAALTV-------------------R-----PEDYSLWNRLGATLAN 259 (365)
T ss_dssp CHHHHHHHH------------------------HHHHHH-------------------C-----TTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHH------------------------HHHHHh-------------------C-----CCCHHHHHHHHHHHHH
Confidence 222222211 100000 0 1235679999999999
Q ss_pred cCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhc
Q 000134 1362 AGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLN 1410 (2096)
Q Consensus 1362 ag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~ 1410 (2096)
.|+++.|...+.++....+ +.+....+.++...|+..+|+..++++++-
T Consensus 260 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 260 GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999987753 567888999999999999999999999863
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.18 Score=64.88 Aligned_cols=399 Identities=15% Similarity=0.100 Sum_probs=196.6
Q ss_pred hhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccch--hhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccc
Q 000134 199 LLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRS--NELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHS 276 (2096)
Q Consensus 199 ~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~ 276 (2096)
|.+++..+|..++..+..++ ++....... .....+..+-+.+...+++.+++..+.+++.|+.......
T Consensus 83 L~s~~~~~~~~A~~~L~~l~---------s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 83 VYSDDNNLQLEATTQFRKLL---------SIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp HTSSCHHHHHHHHHHHHHHH---------TCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHh---------cCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 38889999999999998875 211100000 1123455666666665669999999999999954222122
Q ss_pred hhHHH--HHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcC--chHHHHHHHHH
Q 000134 277 QHFLF--LLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLAS--RPIMVREFAEA 352 (2096)
Q Consensus 277 e~~~~--~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~--rp~~~~~~~e~ 352 (2096)
..+.- ++-.|+..|.++++-++..|..-+.++|...... +...+.....+.+++-|.. .|.+.+..|
T Consensus 154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~-------~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~-- 224 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC-------RDLVLANGALLPLLAQLNEHTKLSMLRNAT-- 224 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHH-------HHHHHHTTCHHHHHHTCCTTCCHHHHHHHH--
T ss_pred HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhh-------HHHHHHCCcHHHHHHHHhcCCCHHHHHHHH--
Confidence 22211 4555889999999999999999999997543110 0000001122333333311 222222222
Q ss_pred HhCCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhccccHHHH---HHHHHHH
Q 000134 353 AFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQADERRL---LSALEFY 429 (2096)
Q Consensus 353 llg~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~~~~~---~~~l~~~ 429 (2096)
.+|..++.... .............|..++...+++.. ..+|..+
T Consensus 225 --------------------------------~~L~~L~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l 271 (528)
T 4b8j_A 225 --------------------------------WTLSNFCRGKP-QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYL 271 (528)
T ss_dssp --------------------------------HHHHHHHCSSS-CCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred --------------------------------HHHHHHHcCCC-CCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 12222221100 00111112222333334444444333 3344444
Q ss_pred hhhcCCChHHHHH-HhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChh-hhhHHHHHHHHHHhhhhh
Q 000134 430 CIQTGSDNQEIFA-AALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLP-GFLRNHFVGLLNSIDRKM 507 (2096)
Q Consensus 430 ~~~~~~~~~~~~~-~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~fl~~~~LGil~~~~~~l 507 (2096)
........+.++. ..+|.++ + .+..++... ...++..++.+..+.+... .++.. |++..+-..+
T Consensus 272 ~~~~~~~~~~~~~~g~v~~Lv-~---lL~~~~~~v-------~~~a~~~L~nl~~~~~~~~~~~~~~---~~l~~L~~lL 337 (528)
T 4b8j_A 272 SDGTNDKIQAVIEAGVCPRLV-E---LLLHPSPSV-------LIPALRTVGNIVTGDDAQTQCIIDH---QALPCLLSLL 337 (528)
T ss_dssp TSSCHHHHHHHHHTTCHHHHH-H---HTTCSCHHH-------HHHHHHHHHHHTTSCHHHHHHHHTT---THHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCHHHHHH-H---HHcCCChhH-------HHHHHHHHHHHHcCCHHHHHHHHHh---hhHHHHHHHH
Confidence 3221111112222 2233333 2 344443221 1234444454544443222 22222 4444443333
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhcccc-----ccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHH
Q 000134 508 LHAEDLSLQKQALKRIEILIEMIGSHL-----TTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVIS 582 (2096)
Q Consensus 508 ~~~~~~~~k~~~l~sl~~li~l~g~~v-----~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~ 582 (2096)
.++.+...++.+..+|+.|..--...+ ..+.|.++..|.+. .++++..++.+...+...- +++....++.
T Consensus 338 ~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~~---~~~~~~~l~~ 412 (528)
T 4b8j_A 338 TQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNATSGG---SHDQIKYLVS 412 (528)
T ss_dssp HSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHS---CHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCC---CHHHHHHHHH
Confidence 333267788999999988864111111 14567777777664 5567777776666665541 1233333332
Q ss_pred -HHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 000134 583 -QVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAV 661 (2096)
Q Consensus 583 -~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~ 661 (2096)
.++..|+.++... ....+..+...|..|+......-. .... +. ..+...+.+..+ +..+.
T Consensus 413 ~~~i~~L~~lL~~~---d~~v~~~al~~L~~l~~~~~~~~~-~~~~----~~----~~~~~~i~~~~~-------~~~l~ 473 (528)
T 4b8j_A 413 EGCIKPLCDLLICP---DIRIVTVCLEGLENILKVGETDKT-LAAG----DV----NVFSQMIDEAEG-------LEKIE 473 (528)
T ss_dssp TTCHHHHHHGGGCS---CHHHHHHHHHHHHHHHHHHHHHHH-HHTC----SC----CHHHHHHHHTTH-------HHHHH
T ss_pred CCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhhh-cccc----cc----cHHHHHHHHCCc-------HHHHH
Confidence 3555666666532 235677888888888765433211 1100 11 112223332221 22333
Q ss_pred hhccCCChhHHHHHHHHHHHHHhhc
Q 000134 662 DGLNHENLNVRYMVVCELSKLLKLK 686 (2096)
Q Consensus 662 ~~l~~en~~Vr~~aL~eL~~~L~~~ 686 (2096)
+-..|+|..|+..|..-|..++...
T Consensus 474 ~L~~~~~~~v~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 474 NLQSHDNNEIYEKAVKILEAYWMDE 498 (528)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 4467899999999998888887653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.04 Score=66.12 Aligned_cols=62 Identities=19% Similarity=0.056 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--C-----------ChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG--A-----------PNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~--~-----------~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
....|...+.+..+.|.++.|...+.++.... . +.+....+..+...|+.++|....+..+.
T Consensus 284 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 284 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 35678899999999999999999988876542 2 45677888999999999999888776554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.066 Score=62.40 Aligned_cols=107 Identities=9% Similarity=0.057 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGS 1418 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~----~~----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~ 1418 (2096)
..+.+|...+.+..+.|+++.|...+.++... +. ..+....|.++...|+..+|+..+++++...+
T Consensus 221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~------ 294 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ------ 294 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH------
Confidence 44668899999999999999999888877543 22 34667788999999999999999998875210
Q ss_pred cccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000134 1419 TAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2096)
Q Consensus 1419 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~ 1485 (2096)
........+.++..+|+.....|+ .++....|+++.++.++
T Consensus 295 ------------------------~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 295 ------------------------ELKDRIGEGRACWSLGNAYTALGN--HDQAMHFAEKHLEISRE 335 (338)
T ss_dssp ------------------------HHTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHC---
T ss_pred ------------------------hcCCcHHHHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHHHHh
Confidence 001123446678888888777775 77888888888887664
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.055 Score=67.65 Aligned_cols=147 Identities=12% Similarity=0.079 Sum_probs=91.4
Q ss_pred HHHHhhccc-CccchhhHHHHHHHHHHccCCchh-----------hhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhh
Q 000134 151 IYFEFLYDE-SSEEVQLSCVRVIRRILVHGTRDV-----------LLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFL 218 (2096)
Q Consensus 151 ~~~~~l~~~-~~~~v~~~~~~~l~~il~h~~~~~-----------~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~ 218 (2096)
.+..+|-+. .+.+|+-++...|++.+++...+. .-..+..-...|-.++.+++..| .++|..+..+.
T Consensus 39 ~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia 117 (462)
T 1ibr_B 39 ELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIA 117 (462)
T ss_dssp HHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHH
Confidence 344555554 467899898899999987653111 00111112222333447777777 77888887764
Q ss_pred hhhhhhhhccCcccccchhhHHHHHHHHHHhhhcC-ChhHHHHHHHHHHHHHhhhc--ccchhHHHHHHHHHHhhCCC--
Q 000134 219 QDTVLSSLFLDENASSRSNELKLLDVIKLAFTAAD-DPLILETLLESTAELMMAVD--VHSQHFLFLLILLVEQLDNP-- 293 (2096)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~i~eTll~~~~~i~~~~~--~~~e~~~~~l~~Li~~L~~~-- 293 (2096)
... +.. ..+ ..++..+...+...+ |+.+++..+.+++.+++... .-...+...+-.|+..|.++
T Consensus 118 ~~~-----~~~---~~w---~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~ 186 (462)
T 1ibr_B 118 CAE-----IPV---NQW---PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP 186 (462)
T ss_dssp HHH-----GGG---TCC---TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCC
T ss_pred HHh-----ccc---ccc---HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCC
Confidence 211 110 112 346666666666544 88999999999999976431 11233344555688888888
Q ss_pred CcchHHHHHHHHHHHh
Q 000134 294 HVTVRMNASRLIRKSC 309 (2096)
Q Consensus 294 n~~v~~~A~~~i~~l~ 309 (2096)
++.||..|..-+.++.
T Consensus 187 ~~~vr~~a~~~l~~~~ 202 (462)
T 1ibr_B 187 SNNVKLAATNALLNSL 202 (462)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHH
Confidence 7899999988887764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.071 Score=60.34 Aligned_cols=104 Identities=15% Similarity=0.069 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
...|...+.+..+.|+++.|...+.++.... .+.+....|.++...|+..+|+..++++++..+.
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------------- 207 (252)
T 2ho1_A 141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ------------- 207 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC-------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-------------
Confidence 3456677777788888888888887776654 3456777888888888888888888877642110
Q ss_pred cCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHH
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGY 1490 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~ 1490 (2096)
...++..++......| +.++..+.|+++.+..|.-...+
T Consensus 208 -----------------------~~~~~~~~~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 208 -----------------------NARSLLLGIRLAKVFE--DRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp -----------------------CHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTSHHHH
T ss_pred -----------------------cHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHHCCCCHHHH
Confidence 0223444444444444 36777777888888777654443
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.22 Score=62.19 Aligned_cols=189 Identities=12% Similarity=0.117 Sum_probs=112.3
Q ss_pred CCCChHHHHHHHHHHHHHHHHhccccccchh-hHHHHHHHHhc--CCCcchhhhHHHHHHHHHhc------c--------
Q 000134 509 HAEDLSLQKQALKRIEILIEMIGSHLTTYVP-KILVLLMHAIN--KESLQCEGLSVLHFFIEQLS------R-------- 571 (2096)
Q Consensus 509 ~~~~~~~k~~~l~sl~~li~l~g~~v~~~~p-qI~a~L~~aL~--~~~L~~~~l~~W~~fv~~L~------~-------- 571 (2096)
...+...|+.++..++.+++..+..+..+.+ .|+..+...+. .++++..++..|..++.... +
T Consensus 227 ~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 306 (462)
T 1ibr_B 227 QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRP 306 (462)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence 4456778888999999999988777777777 77776666664 45688999999999887641 0
Q ss_pred ---CCCcchhhHHHHHHHHhhhccccCCC----CchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHH
Q 000134 572 ---VSPSSTKHVISQVFAALIPFLERDKD----NPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAI 644 (2096)
Q Consensus 572 ---~~~~~l~~ll~~i~~~lip~~~~~~~----~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l 644 (2096)
.....+++.+..++..++..+...++ .....+..+...|..|....
T Consensus 307 ~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~--------------------------- 359 (462)
T 1ibr_B 307 PEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC--------------------------- 359 (462)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT---------------------------
T ss_pred ccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhc---------------------------
Confidence 01112334445555555554432110 01122444555554443221
Q ss_pred HHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCC-chhHHHHHHHHHHHhhhhcccc
Q 000134 645 QEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSD-LDVLSTLISSLLRGCAEESRTV 723 (2096)
Q Consensus 645 ~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~-~~vi~~Lv~sLL~~c~~~~~t~ 723 (2096)
+..-+..-+..+...+++.+..+|.-|+.-|..+... ..+.. .+.+..++..|+.+..+.
T Consensus 360 ----~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~-----------~~~~~~~~~l~~~~~~l~~~l~d~---- 420 (462)
T 1ibr_B 360 ----EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG-----------PEPSQLKPLVIQAMPTLIELMKDP---- 420 (462)
T ss_dssp ----TTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS-----------SCTTTTCTTTTTHHHHHHHGGGCS----
T ss_pred ----cHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC-----------CcHHHHHHHHHHHHHHHHHHhcCC----
Confidence 1111112233445566678888999888887766532 11100 134456777777766543
Q ss_pred chhhHHHHHHHhhcccCccCc
Q 000134 724 VGQKLKLVCADCLGALGAVDP 744 (2096)
Q Consensus 724 ~~~~I~~lca~CLG~IGalDp 744 (2096)
...++..|+.|||.++..-+
T Consensus 421 -~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 421 -SVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp -CHHHHHHHHHHHHHHHHHGG
T ss_pred -CHHHHHHHHHHHHHHHHhcc
Confidence 25899999999999986543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.042 Score=61.94 Aligned_cols=61 Identities=11% Similarity=0.023 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
...|...+.+..+.|.++.|...+.++....+ +.+....|.+++..|+..+|+..++++++
T Consensus 173 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 173 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45788899999999999999999999887653 46788899999999999999999999876
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.51 Score=66.21 Aligned_cols=259 Identities=12% Similarity=0.075 Sum_probs=156.9
Q ss_pred CCCHHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChh-
Q 000134 1040 AIPKVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQ- 1118 (2096)
Q Consensus 1040 ~Ip~~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~- 1118 (2096)
.....-+|..+..-+.|+-|...+|..-+ ....+..+|.+++..|.+.-+......+.+-
T Consensus 1049 ~~d~~eIA~Iai~lglyEEAf~IYkKa~~-------------------~~~A~~VLie~i~nldrAiE~Aervn~p~vWs 1109 (1630)
T 1xi4_A 1049 NYDAPDIANIAISNELFEEAFAIFRKFDV-------------------NTSAVQVLIEHIGNLDRAYEFAERCNEPAVWS 1109 (1630)
T ss_pred hccHHHHHHHHHhCCCHHHHHHHHHHcCC-------------------HHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHH
Confidence 34466799999999999999999987521 0111222233444444444433221111111
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCC
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~ 1198 (2096)
+-.-.++..|+|.+|..+|+++ ++.+....+.+|+.++|+|+.++.+..--....++. .+...-+.|-.++++
T Consensus 1110 qLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~--~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A 1110 QLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNR 1182 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc--cccHHHHHHHHhhcC
Confidence 2234578999999999999875 566677789999999999999888765322111110 011113345566799
Q ss_pred hhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHHhh
Q 000134 1199 WDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVKLH 1278 (2096)
Q Consensus 1199 Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~kLH 1278 (2096)
++.+++|+.... ...+. .+|..+ ...++.++....-+.+ ..|.+.-..++++
T Consensus 1183 leele~fI~~~n-----------~ad~~-~iGd~l--e~eg~YeeA~~~Y~kA-------------~ny~rLA~tLvkL- 1234 (1630)
T 1xi4_A 1183 LAELEEFINGPN-----------NAHIQ-QVGDRC--YDEKMYDAAKLLYNNV-------------SNFGRLASTLVHL- 1234 (1630)
T ss_pred HHHHHHHHhCCC-----------HHHHH-HHHHHH--HhcCCHHHHHHHHHhh-------------hHHHHHHHHHHHh-
Confidence 999999875322 12333 355444 3344444333322211 2333333333333
Q ss_pred hhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHH
Q 000134 1279 LLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKL 1358 (2096)
Q Consensus 1279 ~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~Akl 1358 (2096)
.|++++++.. |++ ...++|.+.+-.
T Consensus 1235 --ge~q~AIEaa--------------------------------------------rKA---------~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1235 --GEYQAAVDGA--------------------------------------------RKA---------NSTRTWKEVCFA 1259 (1630)
T ss_pred --CCHHHHHHHH--------------------------------------------HHh---------CCHHHHHHHHHH
Confidence 3444444332 221 012578888999
Q ss_pred HHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1359 CRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1359 ARKag~~~~A~~all~a~~~~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
|-..|.+..|..+.++. ...|+..-+-++.+-+.|..++||..++.++.
T Consensus 1260 cve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred HhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999999999988863 23455555778889999999999999998875
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.024 Score=70.99 Aligned_cols=318 Identities=11% Similarity=0.006 Sum_probs=154.7
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHH----Hhc-cC---
Q 000134 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLAR----LHK-SL--- 1115 (2096)
Q Consensus 1044 ~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~----~~~-~~--- 1115 (2096)
..||..-..=|.|..||-++++.+.-.+... +. . .....-..+..|..+|..+++.+-...... +.. ..
T Consensus 55 n~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~-~~-~-~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 55 NLLAYLKHLKGQNEAALECLRKAEELIQQEH-AD-Q-AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS-GG-G-CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcC-cc-c-cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 3678888888999999999998754221100 00 0 001112346789999999999998766542 111 11
Q ss_pred Chh------HHHHHh--HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHH---hccChHHHHHHhhhhhccChhhhhh
Q 000134 1116 SLQ------DELLSN--KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLL---NMCHLQAMVTHVDGLISRIPQYKKT 1184 (2096)
Q Consensus 1116 sl~------~qil~~--E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~---~LGq~~~ll~~~~gl~~~~p~~~~~ 1184 (2096)
... .....+ ...+++++|..+|+++++..|++.+...++-.++. +.|+++..+...+..+...|+....
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~ 211 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHH
Confidence 111 111222 23457999999999999999999988877666644 4455554444333322333332222
Q ss_pred HhHHHHH---HHHhcCChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhc
Q 000134 1185 WCMQGVQ---AAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAA 1261 (2096)
Q Consensus 1185 ~~~~~vE---AAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa 1261 (2096)
+..++.. .....|+++.-.+++...-.. .+........+|.++ ...++.....+..+++... .+
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~------~~~~~~~~~~lg~~~--~~~~~~~~A~~~~~~al~~-----~p 278 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEK------APGVTDVLRSAAKFY--RRKDEPDKAIELLKKALEY-----IP 278 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHH------CSSCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHH-----ST
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh------CccHHHHHHHHHHHH--HHcCchHHHHHHHHHHHHh-----CC
Confidence 2222221 112234555544444332110 001122233455444 3445554444444333211 11
Q ss_pred cchhhHHhhhHHHHHhhhhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCc
Q 000134 1262 AGMDSYTRAYPFIVKLHLLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGA 1341 (2096)
Q Consensus 1262 ~~~eSy~r~y~~l~kLH~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~ 1341 (2096)
..... |..+-.++. +.......... .. ... .......+ .+.+-.++++ ...
T Consensus 279 ~~~~~----~~~lg~~y~----~~~~~~~~~~~---~~-~~~---~~~~~~~~-------------~~A~~~~~~a-~~~ 329 (472)
T 4g1t_A 279 NNAYL----HCQIGCCYR----AKVFQVMNLRE---NG-MYG---KRKLLELI-------------GHAVAHLKKA-DEA 329 (472)
T ss_dssp TCHHH----HHHHHHHHH----HHHHHHHHC----------C---HHHHHHHH-------------HHHHHHHHHH-HHH
T ss_pred ChHHH----HHHHHHHHH----HHHHHhhhHHH---HH-HHH---HHHHHhhH-------------HHHHHHHHHH-hhc
Confidence 11111 111111110 00000000000 00 000 00000000 0111112221 111
Q ss_pred CCCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh-----HHHHHHHHH-HHcCCchHHHHHHHHHhh
Q 000134 1342 SGLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN-----VHMEKAKLL-WSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1342 ~~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~~-----~~iE~AKLL-W~~g~~~~Ai~~L~~~i~ 1409 (2096)
.......|...+.+..+.|+++.|.....+|.....+. +....+.++ ...|+.++|+...+++++
T Consensus 330 ---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 330 ---NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp ---CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred ---CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 12234468889999999999999999999988765433 234445543 567889999999999876
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=96.72 E-value=2.4 Score=54.09 Aligned_cols=134 Identities=12% Similarity=0.141 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHHcC----Ch----HHHHHHHHHHhhc--CCChHHHHHHHHHHH-------cCCch-------HHHHH
Q 000134 1348 VGNCWLQYAKLCRLAG----HY----ETATRAILEAQAS--GAPNVHMEKAKLLWS-------TRRSD-------GAIAE 1403 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag----~~----~~A~~all~a~~~--~~~~~~iE~AKLLW~-------~g~~~-------~Ai~~ 1403 (2096)
....|..+...-++++ .. +.|.....+|... ..+.+.+.+|++++. .|+.. +|+..
T Consensus 229 ~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 3568888887777643 11 2444444455443 357899999999997 78877 89999
Q ss_pred HHHHhhc-CCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 000134 1404 LQQNLLN-KPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVREL 1482 (2096)
Q Consensus 1404 L~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l 1482 (2096)
++++++. .| ..+.+++.++.+....|+ .+++.+.|.++++.
T Consensus 309 ~~~Al~~~~p------------------------------------~~~~l~~~~~~~~~~~g~--~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 309 YERAISTLLK------------------------------------KNMLLYFAYADYEESRMK--YEKVHSIYNRLLAI 350 (530)
T ss_dssp HHHHTTTTCS------------------------------------SCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHS
T ss_pred HHHHHHHhCc------------------------------------ccHHHHHHHHHHHHhcCC--HHHHHHHHHHHhCc
Confidence 9998752 11 014467778887777664 88999999999999
Q ss_pred ccch-HHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCc
Q 000134 1483 QPMW-EKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHK 1541 (2096)
Q Consensus 1483 ~~~w-eK~~~~la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~ 1541 (2096)
.|.. ..+|..+|.++.+.- -...+...|-+++...+.
T Consensus 351 ~p~~~~~~~~~~~~~~~~~~----------------------~~~~A~~~~~~Al~~~~~ 388 (530)
T 2ooe_A 351 EDIDPTLVYIQYMKFARRAE----------------------GIKSGRMIFKKAREDART 388 (530)
T ss_dssp SSSCHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHTCTTC
T ss_pred cccCchHHHHHHHHHHHHhc----------------------CHHHHHHHHHHHHhccCC
Confidence 9875 468999988864321 122477778888876543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.16 Score=55.84 Aligned_cols=107 Identities=16% Similarity=0.042 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
...|...+.+..+.|+++.|...+.++.... .+.+....|.+++..|+..+|+..+++++...|.
T Consensus 113 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------------- 179 (225)
T 2vq2_A 113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV------------- 179 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS-------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------
Confidence 4567788888899999999999888887664 3567788899999999999999999988652110
Q ss_pred cCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHH
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFY 1492 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~ 1492 (2096)
. + ..++..++......|. .+++...++.+.+..|....++..
T Consensus 180 -----~--------------~---~~~~~~~~~~~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 180 -----L--------------Q---ADDLLLGWKIAKALGN--AQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp -----C--------------C---HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred -----C--------------C---HHHHHHHHHHHHhcCc--HHHHHHHHHHHHHhCCCCHHHHHH
Confidence 0 0 1223344444444443 667777777777888876655443
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=96.64 E-value=1.1 Score=62.09 Aligned_cols=388 Identities=11% Similarity=0.093 Sum_probs=191.6
Q ss_pred hcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHhhhc--CChhHHHHHHHHHHHHHhhhcccch
Q 000134 200 LNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAA--DDPLILETLLESTAELMMAVDVHSQ 277 (2096)
Q Consensus 200 ~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~eTll~~~~~i~~~~~~~~e 277 (2096)
.+++-..|+|++..+.++.+. -.... ..++..+-..+... .+|.|..+.+.++|+...-...+.+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~---------~~~~~----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~ 525 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAET---------IDVNY----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV 525 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTS---------CCSSC----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH
T ss_pred CCCchHHHHHHHHHHHHHHhh---------cCchh----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH
Confidence 456667899998888886521 11111 12344444333332 4789999999999998553333456
Q ss_pred hHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHH---hcCchHHHHHHHHHHh
Q 000134 278 HFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVR---LASRPIMVREFAEAAF 354 (2096)
Q Consensus 278 ~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~---l~~rp~~~~~~~e~ll 354 (2096)
.+..++=.|+..|.+ +-|+..|...+.++|+.... .+.++...+.+.|...+.+. -..++.....++. ++
T Consensus 526 ~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~----~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~-i~ 598 (963)
T 2x19_B 526 MINSVLPLVLHALGN--PELSVSSVSTLKKICRECKY----DLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGF-LL 598 (963)
T ss_dssp HHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGG----GCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHH-HH
Confidence 676667778899965 78999999999999987643 24466655544444444431 1233444555553 44
Q ss_pred C-CChHHHHH---hhcccccchhhh--ccccChhH-------HHHHHHHHHHcCCC----------------------ch
Q 000134 355 G-VETEELVK---KMIPAVLPKLVV--SQQDNDQA-------VNIINELAKCLNTD----------------------MV 399 (2096)
Q Consensus 355 g-~~~~~fL~---~~~~~~LP~LVl--~~~~~~~~-------~~~i~~ia~~~~~~----------------------~~ 399 (2096)
. ++.+++.. ...+..++.+-. ....+... ...|..+++.++.. ..
T Consensus 599 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (963)
T 2x19_B 599 SALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVV 678 (963)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchH
Confidence 3 33233322 222222222211 11112121 13344566665532 11
Q ss_pred hHHhhhHHHHHHHHhc--cccHHHHHHHHHHHhh---hcCCChHHHHHHhhHHHHHHHHH-hhcCCCchhHhhhhcchhH
Q 000134 400 PLIVTWIPKVLAFALH--QADERRLLSALEFYCI---QTGSDNQEIFAAALPALLDELIC-FVDGGDSDEINERLNRVPR 473 (2096)
Q Consensus 400 ~l~~~~~~~Ila~ll~--~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~eLl~-~~~~~~~~~~~~~~~~~~~ 473 (2096)
+++..-++-++ .++. ..+.+....+..++.. ..+.+.. ..+|.++..++. +.+... +.+-.
T Consensus 679 ~~~~~~~~~~~-~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~----~~l~~~~~~l~~~~~~~~~--------~~~l~ 745 (963)
T 2x19_B 679 VVLQQVFQLIQ-KVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA----PMVPQLCEMLGRMYSTIPQ--------ASALD 745 (963)
T ss_dssp HHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG----GGHHHHHHHHHHHHHHSCC--------HHHHH
T ss_pred HHHHHHHHHHH-HHHHhccCchHHHHHHHHHHHHHHHhhccccc----ccHHHHHHHHHHHHHcCCc--------cHHHH
Confidence 22222222222 2221 1122222323333322 2332222 223444433322 111111 01111
Q ss_pred HHHHHhhhccCCCC----hhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhcccc--ccc-hhhHHHHHH
Q 000134 474 VIRKVSTVLTGNED----LPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHL--TTY-VPKILVLLM 546 (2096)
Q Consensus 474 ~~~~~~~~~~~~~~----~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v--~~~-~pqI~a~L~ 546 (2096)
.+..+.+.....+. +..+++.-+-.++..|++.+ .+....++....-++.+++-+.+.+ ++. ...|+.++.
T Consensus 746 l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~--~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~~~~i~~~~~ 823 (963)
T 2x19_B 746 LTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGP--RDHPDIVDSFMQLLAQALKRKPDLFLCERLDVKAVFQCAV 823 (963)
T ss_dssp HHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCT--TTCHHHHHHHHHHHHHHHHHCGGGGGCTTSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCc--ccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHH
Confidence 12222111111222 22333322222222233211 1235567888999999998887754 344 677888888
Q ss_pred HHhcC--CCcchhhhHHHHHHHHHhccCC------CcchhhHHHHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhH
Q 000134 547 HAINK--ESLQCEGLSVLHFFIEQLSRVS------PSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNR 618 (2096)
Q Consensus 547 ~aL~~--~~L~~~~l~~W~~fv~~L~~~~------~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~ 618 (2096)
.+|.. ++....++..|..++....... ......++.+++..+. . ..++...+.+.++|..|+..++
T Consensus 824 ~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~---~---~~~~~~~~~~~~il~~l~~~~~ 897 (963)
T 2x19_B 824 LALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIG---G---QASRSLMDCFADILFALNKHCF 897 (963)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHT---T---TSCGGGHHHHHHHHHHHHHHSH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhc---c---cCChhHHHHHHHHHHHHHHHCh
Confidence 88853 3456678888888876532100 0122344444544442 1 1222334667778888888788
Q ss_pred HHHHhhcccC
Q 000134 619 AILKQHIHEF 628 (2096)
Q Consensus 619 ~~L~~~i~~l 628 (2096)
+.+.+++..+
T Consensus 898 ~~~~~~l~~~ 907 (963)
T 2x19_B 898 SLLSMWIKEA 907 (963)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.025 Score=58.44 Aligned_cols=114 Identities=13% Similarity=0.052 Sum_probs=94.1
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccc
Q 000134 1344 LGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAI 1421 (2096)
Q Consensus 1344 ~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~ 1421 (2096)
++++.++.|-.-+....+.|.++.|.....+|....+ +.+....|..+...|+..+|+..++++++-.|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--------- 78 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS--------- 78 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh---------
Confidence 5678888999999999999999999999999988754 56788899999999999999999999876211
Q ss_pred ccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHh
Q 000134 1422 SSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAK 1495 (2096)
Q Consensus 1422 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~ 1495 (2096)
..++++..+|.-....|+ .++.++.|++|++++|+...++..++.
T Consensus 79 ---------------------------~~~~a~~~lg~~~~~~~~--~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 79 ---------------------------KFIKGYIRKAACLVAMRE--WSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp ---------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---------------------------hhhHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 114567777776666654 788999999999999999888887765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.087 Score=70.81 Aligned_cols=137 Identities=16% Similarity=0.203 Sum_probs=112.2
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
.+.++.|...+.+.++.|+++.|..+..+|.++. .+.+....|.++.+.|+..+|+..++++++-.|
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P----------- 74 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP----------- 74 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----------
Confidence 3567889999999999999999999999998875 356788899999999999999999999886221
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHH
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVD 1503 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~ 1503 (2096)
..+.++..+|.-+.+.|+ .++.++.|++|++++|+...+|+.+|.-|.+.
T Consensus 75 -------------------------~~~~a~~nLg~~l~~~g~--~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~--- 124 (723)
T 4gyw_A 75 -------------------------TFADAYSNMGNTLKEMQD--VQGALQCYTRAIQINPAFADAHSNLASIHKDS--- 124 (723)
T ss_dssp -------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT---
T ss_pred -------------------------CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---
Confidence 115567777777766665 78899999999999999999999999876432
Q ss_pred HHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1504 ARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1504 ~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
| -...|+.+|-+++...+++
T Consensus 125 -----------g--------~~~eAi~~~~~Al~l~P~~ 144 (723)
T 4gyw_A 125 -----------G--------NIPEAIASYRTALKLKPDF 144 (723)
T ss_dssp -----------T--------CHHHHHHHHHHHHHHCSCC
T ss_pred -----------C--------CHHHHHHHHHHHHHhCCCC
Confidence 1 1236899999999988765
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.22 Score=62.08 Aligned_cols=154 Identities=12% Similarity=0.055 Sum_probs=103.1
Q ss_pred HHHHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhh--hhhh
Q 000134 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDT--VLSS 225 (2096)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~--~~~~ 225 (2096)
.-+.+.++|-++.+.+|+.....+|..+..+.+.....-....-+..+-.++.+++..||+.++..+..+..+. .-..
T Consensus 65 ~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~ 144 (450)
T 2jdq_A 65 VVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144 (450)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence 44557777777768899999999999999876543210011223445555668999999999999999875221 0000
Q ss_pred hccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhh--cccchhHHHHHHHHHHhhCCCCcchHHHHHH
Q 000134 226 LFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAV--DVHSQHFLFLLILLVEQLDNPHVTVRMNASR 303 (2096)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~--~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~ 303 (2096)
++. ...+..+-+.+....++.+++..+.+++.++... ........-++-.|+..|.++++-++..|..
T Consensus 145 ~~~----------~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~ 214 (450)
T 2jdq_A 145 VLD----------CNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACW 214 (450)
T ss_dssp HHH----------TTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHH----------CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 110 1234555565555578899999999999996432 1122223334556788888999999999999
Q ss_pred HHHHHhhh
Q 000134 304 LIRKSCFF 311 (2096)
Q Consensus 304 ~i~~l~~~ 311 (2096)
-+.++|..
T Consensus 215 ~L~~l~~~ 222 (450)
T 2jdq_A 215 ALSYLSDG 222 (450)
T ss_dssp HHHHHTSS
T ss_pred HHHHHHCC
Confidence 99888764
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.66 Score=59.64 Aligned_cols=148 Identities=8% Similarity=0.025 Sum_probs=92.2
Q ss_pred HHHHhhcccCccchhhHHHHHHHHHHccCC-ch--hhhhhhhHHHHHHHHHhhcc-cHHHHHHHHHHHhHhhhh--hhhh
Q 000134 151 IYFEFLYDESSEEVQLSCVRVIRRILVHGT-RD--VLLKTRSEWIKCIEFLLLNK-RKAIRDAFCTQIGYFLQD--TVLS 224 (2096)
Q Consensus 151 ~~~~~l~~~~~~~v~~~~~~~l~~il~h~~-~~--~~~~~~~~w~~~~~~~~~~~-~r~vR~a~~~~~~~~~~~--~~~~ 224 (2096)
.+++.|..+ +.+++..++..|++++.+.. .. ..+. ...+.-|-.+|.++ +..||..++..+..+... ....
T Consensus 91 ~lv~~L~s~-~~~~~~~A~~~L~~ll~~~~~~~~~~~~~--~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~ 167 (530)
T 1wa5_B 91 QMTQQLNSD-DMQEQLSATVKFRQILSREHRPPIDVVIQ--AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK 167 (530)
T ss_dssp HHHHHHSCS-SHHHHHHHHHHHHHHTCCSSSCSHHHHHH--TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHHhCCCCCccHHHHHH--CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence 355666554 57899999999999998753 21 1111 11223333344776 899999999999886521 0111
Q ss_pred hhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHhhCCCCcchHHHHH
Q 000134 225 SLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDNPHVTVRMNAS 302 (2096)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~~n~~v~~~A~ 302 (2096)
.+.. ...+..+.+.+. ..|+.+++..+.+++.|........+.+. -++-.|+..|.++++-++..|.
T Consensus 168 ~~~~----------~g~i~~Lv~lL~-~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~ 236 (530)
T 1wa5_B 168 VVVD----------ADAVPLFIQLLY-TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTAT 236 (530)
T ss_dssp HHHH----------TTCHHHHHHHHH-HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHH
T ss_pred HHHH----------CCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHH
Confidence 1111 112333444333 36889999999999999542111111111 1344588888888999999999
Q ss_pred HHHHHHhhhh
Q 000134 303 RLIRKSCFFH 312 (2096)
Q Consensus 303 ~~i~~l~~~~ 312 (2096)
.-+.++|...
T Consensus 237 ~~L~~L~~~~ 246 (530)
T 1wa5_B 237 WTLSNLCRGK 246 (530)
T ss_dssp HHHHHHHCCS
T ss_pred HHHHHHhCCC
Confidence 9999998764
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.72 Score=64.00 Aligned_cols=389 Identities=13% Similarity=0.096 Sum_probs=178.0
Q ss_pred ccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHhhh-cCChhHHHHHHHHHHHHHhhhcccchhHH
Q 000134 202 KRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTA-ADDPLILETLLESTAELMMAVDVHSQHFL 280 (2096)
Q Consensus 202 ~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~eTll~~~~~i~~~~~~~~e~~~ 280 (2096)
++=..|+|+...+.++.+. -..........++..+ -.+.. ..+|.|++|.+.++|+...-...+.+.+.
T Consensus 476 ~~w~~~eaal~~l~~iae~---------~~~~~~~~l~~l~~~l-~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~ 545 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEH---------FGGEEKRQIPRLMRVL-AEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP 545 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC---------------CHHHHHHHHH-HHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH
T ss_pred CcHHHHHHHHHHHHHHHhh---------cChhhhHHHHHHHHHH-HhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 4556788988888885411 1111112223344422 22332 13799999999999998654444456777
Q ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHH---hcCchHHHHHHHHHHhC-C
Q 000134 281 FLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVR---LASRPIMVREFAEAAFG-V 356 (2096)
Q Consensus 281 ~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~---l~~rp~~~~~~~e~llg-~ 356 (2096)
-++=.|+..|+ +-|+..|..-|.++|+.... .+.++...+.+.++..+.+. -..++...+.++. +++ +
T Consensus 546 ~vl~~l~~~l~---~~v~~~A~~al~~l~~~~~~----~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~-i~~~~ 617 (971)
T 2x1g_F 546 PAINLLVRGLN---SSMSAQATLGLKELCRDCQL----QLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGK-LMSLL 617 (971)
T ss_dssp HHHHHHHHHHH---SSCHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHH-HHHTS
T ss_pred HHHHHHHHHhC---hHHHHHHHHHHHHHHHHHHH----hccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHH-HHHhC
Confidence 77777888883 67899999999999976643 23455544544444444431 2234444555553 333 2
Q ss_pred ChHH---HHHhhcccccchhhhcccc---C----hhHHHH---HHHHHHHcCC-------------CchhHHhhhHHHHH
Q 000134 357 ETEE---LVKKMIPAVLPKLVVSQQD---N----DQAVNI---INELAKCLNT-------------DMVPLIVTWIPKVL 410 (2096)
Q Consensus 357 ~~~~---fL~~~~~~~LP~LVl~~~~---~----~~~~~~---i~~ia~~~~~-------------~~~~l~~~~~~~Il 410 (2096)
+.++ ++....+.++..+-...+. + ...... |..+...++. ...+.+..-++-+.
T Consensus 618 ~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 697 (971)
T 2x1g_F 618 RPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFK 697 (971)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHH
Confidence 2222 2222222222222111010 1 112223 3333333332 12333333333222
Q ss_pred HHHhc-c-ccHHHHHHHHHHHhh---hcCCChHHHHHHhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhcc--
Q 000134 411 AFALH-Q-ADERRLLSALEFYCI---QTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLT-- 483 (2096)
Q Consensus 411 a~ll~-~-~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 483 (2096)
.++- . .+.+...++..++.. ..+.+ +...+|.++.-|+..+.... ....+..++.++.
T Consensus 698 -~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~----~~p~l~~~~~~l~~~~~~~~----------~~~~l~l~~~~i~~~ 762 (971)
T 2x1g_F 698 -RIAEMWVEEIDVLEAACSAMKHAITNLRSS----FQPMLQDLCLFIVASFQTRC----------CAPTLEISKTAIVMF 762 (971)
T ss_dssp -HHHHHTTTCHHHHHHHHHHHHHHHHHHHC------CTHHHHHHHHHHHHCC--C----------CHHHHHHHHHHHTTC
T ss_pred -HHHHhccccHHHHHHHHHHHHHHHHhhhhh----ccccHHHHHHHHHHHHhcCC----------chHHHHHHHHHHHHh
Confidence 2321 1 123333333333332 22211 12234555533332222111 0112222222222
Q ss_pred CC-CChhhhhHHHHHHHHHHhhhhhcCC------CChHHHHHHHHHHHHHHHHhcccc--ccc-hhhHHHHHHHHhc--C
Q 000134 484 GN-EDLPGFLRNHFVGLLNSIDRKMLHA------EDLSLQKQALKRIEILIEMIGSHL--TTY-VPKILVLLMHAIN--K 551 (2096)
Q Consensus 484 ~~-~~~~~fl~~~~LGil~~~~~~l~~~------~~~~~k~~~l~sl~~li~l~g~~v--~~~-~pqI~a~L~~aL~--~ 551 (2096)
|. +...+.+.+-+-.++..+-..+... .....++..+.=+..+++.+-.++ ++. .+.|+-+...+|. .
T Consensus 763 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~~i~~~~~~~l~~~~ 842 (971)
T 2x1g_F 763 FKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYDRLVFYAQRGMTLPE 842 (971)
T ss_dssp CC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHHHHHHHHHHHHTSSC
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCC
Confidence 22 2333333333333333221111111 122344555566667776554443 355 7888888888874 3
Q ss_pred CCcchhhhHHHHHHHHHhccCCCcchhhHH----HHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhccc
Q 000134 552 ESLQCEGLSVLHFFIEQLSRVSPSSTKHVI----SQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHE 627 (2096)
Q Consensus 552 ~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll----~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~ 627 (2096)
++-...++++|..++.. .. ..+.+..++ ..++..++.-+. ...+....+.+..+|..|+..+.+....++..
T Consensus 843 ~~~~~s~~~fl~~~i~~-~~-~~~~~~~~~~~~g~~l~~~l~~~~~--~~~~~s~~~~~a~~l~~l~~~~~~~~~~~l~~ 918 (971)
T 2x1g_F 843 SGAIRNSIQFLTHFVMQ-SR-NHAHVTEVVLATGEQTLYTAMMCVG--YLTPRSQVDKFADILLAMNRKYAAEMAVWMKS 918 (971)
T ss_dssp SSHHHHHHHHHHHHHHH-HT-TCHHHHHHHHHHHHHHHHHHHHHHH--TTSCGGGGGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc-CC-chHHHHHHHHHhHHHHHHHHHHHhc--ccCChhHHHHHHHHHHHHHHHCcHHHHHHHHH
Confidence 44556788999998776 21 123333333 223333322221 11223334567788999988888777666653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.16 Score=54.81 Aligned_cols=136 Identities=15% Similarity=0.202 Sum_probs=99.1
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
+.+..|+..+.+.++.|.++.|.....+|.+.. .+.+....|.++...|+..+|+..++.++...+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~----------- 71 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT----------- 71 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-----------
Confidence 457789999999999999999999999998775 4567889999999999999999999988653211
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHH
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDA 1504 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~ 1504 (2096)
.+.++..+|......++ .+.....|.++.+..|....+|+.+|..|.+.
T Consensus 72 -------------------------~~~~~~~~~~~~~~~~~--~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~---- 120 (184)
T 3vtx_A 72 -------------------------SAEAYYILGSANFMIDE--KQAAIDALQRAIALNTVYADAYYKLGLVYDSM---- 120 (184)
T ss_dssp -------------------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----
T ss_pred -------------------------hHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCccchHHHHHHHHHHHHh----
Confidence 02344555555444443 66777788888888888888888887766422
Q ss_pred HhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1505 RKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1505 ~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
| -...|+..|-+++...+.+
T Consensus 121 ----------g--------~~~~A~~~~~~~l~~~p~~ 140 (184)
T 3vtx_A 121 ----------G--------EHDKAIEAYEKTISIKPGF 140 (184)
T ss_dssp ----------T--------CHHHHHHHHHHHHHHCTTC
T ss_pred ----------C--------CchhHHHHHHHHHHhcchh
Confidence 0 1135777777777766543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.077 Score=64.22 Aligned_cols=62 Identities=15% Similarity=0.059 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~----~~----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
.+..|...|.+..+.|.++.|...+.+|... +. +.+....|.++...|+..+|+..++++++
T Consensus 266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4667889999999999999999988887654 22 34677889999999999999999999875
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=96.32 E-value=1.5 Score=56.62 Aligned_cols=103 Identities=8% Similarity=0.018 Sum_probs=69.1
Q ss_pred hhcccHHHHHHHHHHHhHhh---hhhhhhhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhccc
Q 000134 199 LLNKRKAIRDAFCTQIGYFL---QDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVH 275 (2096)
Q Consensus 199 ~~~~~r~vR~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~ 275 (2096)
+.+.|..++..+...+..++ .++-++.+.. ..++-.+-+.+...+++.++....-+++.|....+.+
T Consensus 85 l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~----------~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~ 154 (529)
T 3tpo_A 85 INSNNLESQLQATQAARKLLSREKQPPIDNIIR----------AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 154 (529)
T ss_dssp HTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHH----------TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHH----------CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 37888888888888887766 1222222222 2245566666767788999998888888884332222
Q ss_pred chhHHH--HHHHHHHhhCCCCcchHHHHHHHHHHHhhh
Q 000134 276 SQHFLF--LLILLVEQLDNPHVTVRMNASRLIRKSCFF 311 (2096)
Q Consensus 276 ~e~~~~--~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~ 311 (2096)
.+.+.- ++=.|+..|.++++-++-.|..-+.+||..
T Consensus 155 ~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~ 192 (529)
T 3tpo_A 155 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGA 192 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 222211 345688999999999999999999998754
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.55 Score=60.24 Aligned_cols=346 Identities=13% Similarity=0.124 Sum_probs=175.0
Q ss_pred HHHhhcccCccchhhHHHHHHHHHHccCC-ch--hhhhhhhHHHHHHHHHhhccc-HHHHHHHHHHHhHhhhhhhhhhhc
Q 000134 152 YFEFLYDESSEEVQLSCVRVIRRILVHGT-RD--VLLKTRSEWIKCIEFLLLNKR-KAIRDAFCTQIGYFLQDTVLSSLF 227 (2096)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~-~~--~~~~~~~~w~~~~~~~~~~~~-r~vR~a~~~~~~~~~~~~~~~~~~ 227 (2096)
+.+.|..+ ..+++...+..|++++.... .. ..+. ...+.-|-.+|.+++ ..+|..++..+..+..
T Consensus 79 lv~~L~s~-~~~~~~~A~~~L~~l~s~~~~~~~~~~~~--~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~-------- 147 (528)
T 4b8j_A 79 MIGGVYSD-DNNLQLEATTQFRKLLSIERSPPIEEVIQ--SGVVPRFVQFLTREDFPQLQFEAAWALTNIAS-------- 147 (528)
T ss_dssp HHHHHTSS-CHHHHHHHHHHHHHHHTCSSSCCHHHHHH--TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHT--------
T ss_pred HHHHHcCC-CHHHHHHHHHHHHHHhcCCCCchHHHHHH--CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC--------
Confidence 55566544 67899999999999988765 22 1111 112223333447776 9999999999988651
Q ss_pred cCcccccch--hhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHH--HHHHHHHhh-CCCCcchHHHHH
Q 000134 228 LDENASSRS--NELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLF--LLILLVEQL-DNPHVTVRMNAS 302 (2096)
Q Consensus 228 ~~~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~--~l~~Li~~L-~~~n~~v~~~A~ 302 (2096)
++. ..+. .....+..+-..+.. .++.+++..+.+++.|........+.+.- ++-.|+..| .++++.++..|.
T Consensus 148 -~~~-~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~ 224 (528)
T 4b8j_A 148 -GTS-ENTKVVIDHGAVPIFVKLLGS-SSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNAT 224 (528)
T ss_dssp -SCH-HHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHH
T ss_pred -CCH-HHHHHHHhCCcHHHHHHHhcC-CCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHH
Confidence 110 0000 001245555564544 68899999999999995322111122211 345688888 678899999999
Q ss_pred HHHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcCc-hHHHHHHHHHHh--CCChHHHH-Hhhcccccchhhhccc
Q 000134 303 RLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLASR-PIMVREFAEAAF--GVETEELV-KKMIPAVLPKLVVSQQ 378 (2096)
Q Consensus 303 ~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~r-p~~~~~~~e~ll--g~~~~~fL-~~~~~~~LP~LVl~~~ 378 (2096)
.-|.++|........ .......+.+++-|.+. |......|..|- ....++.. .....-++|.||-.-+
T Consensus 225 ~~L~~L~~~~~~~~~--------~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~ 296 (528)
T 4b8j_A 225 WTLSNFCRGKPQPSF--------EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLL 296 (528)
T ss_dssp HHHHHHHCSSSCCCH--------HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHcCCCCCcH--------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc
Confidence 999999876522111 11133456666666533 333333332111 11222222 2223356777775322
Q ss_pred c-Ch-hHHHHHHHHHHHcCCC---chhHHhhhHHHHHHHHhccc-cHHHHHHHHHHHhhhcCCChH---HHHH-HhhHHH
Q 000134 379 D-ND-QAVNIINELAKCLNTD---MVPLIVTWIPKVLAFALHQA-DERRLLSALEFYCIQTGSDNQ---EIFA-AALPAL 448 (2096)
Q Consensus 379 ~-~~-~~~~~i~~ia~~~~~~---~~~l~~~~~~~Ila~ll~~~-~~~~~~~~l~~~~~~~~~~~~---~~~~-~~~~~~ 448 (2096)
. +. .....+..|+.....+ ...++.......|..++... .+.....+...+.+.+..+.. .++. ..+|.+
T Consensus 297 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L 376 (528)
T 4b8j_A 297 HPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPL 376 (528)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHH
T ss_pred CCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHH
Confidence 1 21 1224444554443322 22333344444445555544 443333333334433332222 2333 233444
Q ss_pred HHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHH
Q 000134 449 LDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIE 528 (2096)
Q Consensus 449 l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~ 528 (2096)
+ +++ ..++.+ .++ .+..++..++.. +......+|.. .|++..|-.- +...+...+..++.+|+.|++
T Consensus 377 ~-~lL---~~~~~~-v~~---~a~~aL~nl~~~--~~~~~~~~l~~--~~~i~~L~~l-L~~~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 377 V-NLL---QTAEFD-IKK---EAAWAISNATSG--GSHDQIKYLVS--EGCIKPLCDL-LICPDIRIVTVCLEGLENILK 443 (528)
T ss_dssp H-HHH---HHSCHH-HHH---HHHHHHHHHHHH--SCHHHHHHHHH--TTCHHHHHHG-GGCSCHHHHHHHHHHHHHHHH
T ss_pred H-HHH---hcCCHH-HHH---HHHHHHHHHHcC--CCHHHHHHHHH--CCCHHHHHHH-HcCCCHHHHHHHHHHHHHHHH
Confidence 4 343 223322 111 123344333321 12222222221 1455554433 344567788899999999988
Q ss_pred Hhcc
Q 000134 529 MIGS 532 (2096)
Q Consensus 529 l~g~ 532 (2096)
....
T Consensus 444 ~~~~ 447 (528)
T 4b8j_A 444 VGET 447 (528)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7644
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.31 E-value=2 Score=58.04 Aligned_cols=508 Identities=13% Similarity=0.071 Sum_probs=252.5
Q ss_pred ccchhhHHHHHHHHHHccCCchhhhhhhhHHHH-HHHHH---hhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccch
Q 000134 161 SEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIK-CIEFL---LLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRS 236 (2096)
Q Consensus 161 ~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~-~~~~~---~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (2096)
.+++|-.+--+|.||..-...|- .|+.+.+ |-+|+ +...+-+-..-+..+ +..+|.+.......
T Consensus 217 ~~~~r~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a---------lt~i~~g~~~~~~~ 284 (810)
T 3now_A 217 TGSSSTIASVCLARIYENMYYDE---AKARFTDQIDEYIKDKLLAPDMESKVRVTVA---------ITALLNGPLDVGNQ 284 (810)
T ss_dssp CTTHHHHHHHHHHHHHHTCCSHH---HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHH---------HHHHHSSSHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHhccch---hHHHHHHHHHHHHHHHhccCChHhHHHHHHH---------HHHHhcCCHHHHHH
Confidence 34455556666666666655542 2344442 43333 122222222222333 44455554221111
Q ss_pred h--hHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcc
Q 000134 237 N--ELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLK 314 (2096)
Q Consensus 237 ~--~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~ 314 (2096)
- .+-++..+-+ +...+|+.+++-.++.++.++........+.....=.|+..|...+..+|..|.--+++++.....
T Consensus 285 ~~~~~G~v~~li~-Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~ 363 (810)
T 3now_A 285 VVAREGILQMILA-MATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQ 363 (810)
T ss_dssp HHHTTTHHHHHHH-HHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTT
T ss_pred HHhccchHHHHHH-HhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 0 2345666665 445678889999999999986554444455544445577777788888898888877777542210
Q ss_pred ccc-ccccchhhhhhhhhhHHHHHHhcCc---hHHHHHHHHHHhCCCh----HHHHHhhcccccchhhhcccc-Ch-hHH
Q 000134 315 GGC-ELLVSKAVLICNELFDYLSVRLASR---PIMVREFAEAAFGVET----EELVKKMIPAVLPKLVVSQQD-ND-QAV 384 (2096)
Q Consensus 315 ~~~-~l~~~~~~~~~~~l~~~~~~~l~~r---p~~~~~~~e~llg~~~----~~fL~~~~~~~LP~LVl~~~~-~~-~~~ 384 (2096)
.+. .-+.... + ..+.+.+++-|.+. +...+.-++.|.-++. .+-+.. ..-++|.||-.-+. |. ..-
T Consensus 364 d~~~~~~~~g~--i-~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~-d~g~Ip~LV~LL~s~d~~i~~ 439 (810)
T 3now_A 364 DAAIRPFGDGA--A-LKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIE-DKASIHALMDLARGGNQSCLY 439 (810)
T ss_dssp TTSCCSSTTTH--H-HHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHH-CHHHHHHHHHHHHTTCGGGHH
T ss_pred Cccccchhhcc--H-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHH-ccchHHHHHHHhCCCChHHHH
Confidence 000 0111111 1 23344455555543 3333333333222222 222221 23478888864221 21 122
Q ss_pred HHHHHHHHHcCCC-----------------------------------chhHHhhhHHHHHHHHhccccH---HHHHHHH
Q 000134 385 NIINELAKCLNTD-----------------------------------MVPLIVTWIPKVLAFALHQADE---RRLLSAL 426 (2096)
Q Consensus 385 ~~i~~ia~~~~~~-----------------------------------~~~l~~~~~~~Ila~ll~~~~~---~~~~~~l 426 (2096)
..+..|++....+ .+.++....-..|..++...++ +++..+|
T Consensus 440 ~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL 519 (810)
T 3now_A 440 GVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVL 519 (810)
T ss_dssp HHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3344444433311 0223333445566667766554 4555666
Q ss_pred HHHhhhcCCChHHHHH-HhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhh
Q 000134 427 EFYCIQTGSDNQEIFA-AALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDR 505 (2096)
Q Consensus 427 ~~~~~~~~~~~~~~~~-~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~ 505 (2096)
.-+..... .-+.++. ..+|.++ +|+ ..++. +.+ + .+..++..++ .+.++-..|-.....|.+..+-.
T Consensus 520 ~NLA~d~~-~r~~Vv~~Gaip~Lv-~LL---~s~~~-~~k-~--~Aa~AL~nL~---~~~~p~~~~~~~~~~~aIppLv~ 587 (810)
T 3now_A 520 NAVCGLKE-LRGKVVQEGGVKALL-RMA---LEGTE-KGK-R--HATQALARIG---ITINPEVSFSGQRSLDVIRPLLN 587 (810)
T ss_dssp HHHHTSHH-HHHHHHHTTHHHHHH-HHH---HSSCH-HHH-H--HHHHHHHHHH---HHSCHHHHTTTHHHHHTHHHHHH
T ss_pred HHHcCCHH-HHHHHHHCCCHHHHH-HHH---ccCCH-HHH-H--HHHHHHHHHh---cCCChhhhhcchhhhcHHHHHHH
Confidence 55543211 2233344 3456555 443 33332 222 1 1234444333 22222112212234566665554
Q ss_pred hhcCCC-ChHHHHHHHHHHHHHHHHh---ccc-c-ccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhh
Q 000134 506 KMLHAE-DLSLQKQALKRIEILIEMI---GSH-L-TTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKH 579 (2096)
Q Consensus 506 ~l~~~~-~~~~k~~~l~sl~~li~l~---g~~-v-~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ 579 (2096)
+++++ +...+..++.+|..|...- ... + ..+.|++..+|.+. .+.++..|+.+...++.. ++....
T Consensus 588 -LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~--~~~Vq~~A~~~L~NLa~~-----~~~~~~ 659 (810)
T 3now_A 588 -LLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED--HLYLTRAAAQCLCNLVMS-----EDVIKM 659 (810)
T ss_dssp -TTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC--CTTHHHHHHHHHHHHTTS-----HHHHHH
T ss_pred -HhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCC-----hHHHHH
Confidence 34433 4444566777777654321 111 1 24679999988863 677888888877666542 223333
Q ss_pred HH--HHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHH
Q 000134 580 VI--SQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQL 657 (2096)
Q Consensus 580 ll--~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l 657 (2096)
++ ...+..|+.+++.. ...+++.|...|..|-..+....+..+. . ..-+
T Consensus 660 ~v~~~g~l~~Lv~LL~s~---d~~vq~~Aa~ALanLt~~s~~~~~~ii~-------------------~-------~g~I 710 (810)
T 3now_A 660 FEGNNDRVKFLALLCEDE---DEETATACAGALAIITSVSVKCCEKILA-------------------I-------ASWL 710 (810)
T ss_dssp HHSSSSHHHHHHHGGGCS---SHHHHHHHHHHHHHHHHHCHHHHHHHHT-------------------S-------TTHH
T ss_pred HHhccCcHHHHHHHhcCC---CHHHHHHHHHHHHHHhCCCHHHHHHHHH-------------------H-------cCCH
Confidence 33 23566777777643 2346777888888876544433321111 0 0123
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhc
Q 000134 658 LAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLG 737 (2096)
Q Consensus 658 ~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG 737 (2096)
..+++-+.+.+..|+..|+.-|..+.....+....++.. +++..|+.- |. ..+ ..+.+|...+.+||-
T Consensus 711 ~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~------G~i~~L~~L-L~---~~d--~~~~~i~e~Al~aL~ 778 (810)
T 3now_A 711 DILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFET------DIMELLSGL-GQ---LPD--DTRAKAREVATQCLA 778 (810)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTS------THHHHHTTS-CC---CTT--STTHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC------CCHHHHHHH-Hh---Ccc--cCcHHHHHHHHHHHH
Confidence 344566678999999999999999988655433333221 344433332 22 111 013577777777764
Q ss_pred ---ccCccCccc
Q 000134 738 ---ALGAVDPAK 746 (2096)
Q Consensus 738 ---~IGalDp~r 746 (2096)
..|.+||+.
T Consensus 779 ~ll~~g~~~~~~ 790 (810)
T 3now_A 779 AAERYRIIERSD 790 (810)
T ss_dssp HHHHHHTC----
T ss_pred HHHhCCCccCCC
Confidence 568888866
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=96.28 E-value=0.36 Score=59.81 Aligned_cols=60 Identities=10% Similarity=0.117 Sum_probs=49.0
Q ss_pred HhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccC-hHHHHHHhhhhhccChhhh
Q 000134 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCH-LQAMVTHVDGLISRIPQYK 1182 (2096)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq-~~~ll~~~~gl~~~~p~~~ 1182 (2096)
.+.+.|++++|+.+|+++++..|++......+-.|+..+|+ ++..+...+..+...|+..
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~ 166 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY 166 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH
Confidence 35678999999999999999999999888888889999997 9888777766555555443
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=96.24 E-value=2.4 Score=57.54 Aligned_cols=149 Identities=7% Similarity=0.038 Sum_probs=87.9
Q ss_pred HHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhh-cccHHHHHHHHHHHhHhhhhh-hhhhhc
Q 000134 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLL-NKRKAIRDAFCTQIGYFLQDT-VLSSLF 227 (2096)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~-~~~r~vR~a~~~~~~~~~~~~-~~~~~~ 227 (2096)
+.+.++|. ....+|+..++.+|..|..|......+.....-+..|-.+|. +.+..+|..++..+..+-.+. ....++
T Consensus 153 p~Lv~lL~-~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~ 231 (780)
T 2z6g_A 153 PELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIF 231 (780)
T ss_dssp HHHHHHHH-CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 33455554 345677888888888887765422111111122333223334 448999999999998853111 011111
Q ss_pred cCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH--HHHHHHHHHhhCCCCcchHHHHHHHH
Q 000134 228 LDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF--LFLLILLVEQLDNPHVTVRMNASRLI 305 (2096)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~--~~~l~~Li~~L~~~n~~v~~~A~~~i 305 (2096)
. ...+..+.+.+ ...|+.+++..+.+++.|+.......+.+ .-++-.|++.|.+++.-++..|..-+
T Consensus 232 ~----------~g~I~~Lv~lL-~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL 300 (780)
T 2z6g_A 232 K----------SGGIPALVNML-GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCL 300 (780)
T ss_dssp H----------TTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHH
T ss_pred H----------cCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1 12344555533 34578899999999999965422222222 12445688999999988888888888
Q ss_pred HHHhh
Q 000134 306 RKSCF 310 (2096)
Q Consensus 306 ~~l~~ 310 (2096)
..+|.
T Consensus 301 ~~La~ 305 (780)
T 2z6g_A 301 QILAY 305 (780)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 77765
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.43 Score=66.35 Aligned_cols=379 Identities=11% Similarity=0.067 Sum_probs=194.2
Q ss_pred HHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhccc-HHHHHHHHHHHhHhhhhhhhhhhccCccc----ccchhhHHH
Q 000134 167 SCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKR-KAIRDAFCTQIGYFLQDTVLSSLFLDENA----SSRSNELKL 241 (2096)
Q Consensus 167 ~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~-r~vR~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 241 (2096)
.++..+.+.+.|...|+-.-+...|...+..+-..+. ..++..+...++.+++.-+--..|...+. .+...+..|
T Consensus 332 ~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F 411 (980)
T 3ibv_A 332 NLFPYLIRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEF 411 (980)
T ss_dssp HTHHHHHHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHH
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHH
Confidence 3788888889998877766688889877665532221 12334444444444322122222433222 122444666
Q ss_pred HHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHH----HHHHHH-HhhC---CCCcchHHHHHHHHHHHhhhhc
Q 000134 242 LDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLF----LLILLV-EQLD---NPHVTVRMNASRLIRKSCFFHL 313 (2096)
Q Consensus 242 ~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~----~l~~Li-~~L~---~~n~~v~~~A~~~i~~l~~~~~ 313 (2096)
.+.+++ +. +++-+++.+ ++++..- .+--++ ..|. +++=-..-.|.-.+..+++...
T Consensus 412 ~e~Rk~---------l~-~l~d~~~~l------~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~ 475 (980)
T 3ibv_A 412 QEMRKK---------LK-IFQDTINSI------DSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLR 475 (980)
T ss_dssp HHHHHH---------HH-HHHHHHHHH------CHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHH---------HH-HHHHHHHhc------ChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcc
Confidence 664444 55 677777666 2333322 233333 3343 2223334555556666666554
Q ss_pred ccccccccchhhhhhhhhhHHHHHHh------cCchHHHHHHHHHHhCCChHHHHHh---hcccccchhhh-----cccc
Q 000134 314 KGGCELLVSKAVLICNELFDYLSVRL------ASRPIMVREFAEAAFGVETEELVKK---MIPAVLPKLVV-----SQQD 379 (2096)
Q Consensus 314 ~~~~~l~~~~~~~~~~~l~~~~~~~l------~~rp~~~~~~~e~llg~~~~~fL~~---~~~~~LP~LVl-----~~~~ 379 (2096)
..+... .......++|.++++.-+ ..+|..-...|+ ++| .+.+++.. ..+.+|+.++- .+..
T Consensus 476 ~~~~~~--~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~-~l~-rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~ 551 (980)
T 3ibv_A 476 GPDAFF--NEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYME-ILV-RYASFFDYESAAIPALIEYFVGPRGIHNTNE 551 (980)
T ss_dssp SGGGTB--CSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHH-HHH-HTGGGGGTCCTTHHHHHHHHTSTTTTTCCCT
T ss_pred cccccc--CcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHH-HHH-HHHHHHhcCchhHHHHHHHHhccccccCCCh
Confidence 322222 111111245666666544 578888777776 665 44455432 23344555443 1211
Q ss_pred Chh--HHHHHHHHHHHcCCCchhHHhhhHHHHHHHH---hcc-----ccH-------------------HHHHHHHHHHh
Q 000134 380 NDQ--AVNIINELAKCLNTDMVPLIVTWIPKVLAFA---LHQ-----ADE-------------------RRLLSALEFYC 430 (2096)
Q Consensus 380 ~~~--~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~l---l~~-----~~~-------------------~~~~~~l~~~~ 430 (2096)
... +...+..+++..+..+. ++++.|+..+ |.- .+. -.+.+++..+.
T Consensus 552 ~V~~~a~~af~~f~~~~~~~L~----~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li 627 (980)
T 3ibv_A 552 RVRPRAWYLFYRFVKSIKKQVV----NYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLI 627 (980)
T ss_dssp TTHHHHHHHHHHHHHHTTTTCS----SSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhHHhh----hHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHH
Confidence 111 44788888888886654 4555566654 331 111 12678888777
Q ss_pred hhcCCCh---HHHHHHhhHHHHHHHHHhhcCCCch-hHhhhhcchhHHHHHHhhhccCC-CChhhhhHHHHHHHHHHhhh
Q 000134 431 IQTGSDN---QEIFAAALPALLDELICFVDGGDSD-EINERLNRVPRVIRKVSTVLTGN-EDLPGFLRNHFVGLLNSIDR 505 (2096)
Q Consensus 431 ~~~~~~~---~~~~~~~~~~~l~eLl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fl~~~~LGil~~~~~ 505 (2096)
...+.+. .+.+...++.++..+-..+.....+ +.......+--++..+++-+.+. ..... ....|.-++..+-.
T Consensus 628 ~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p-~~~~f~~~~~~il~ 706 (980)
T 3ibv_A 628 SSGNLTPEEQALYCDSLINALIGKANAALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVA-WLASFNKASDEIFL 706 (980)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCS-HHHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCc-HHHHHHHHHHHHHH
Confidence 6655433 3445566666665554333222211 11101111223334444433221 11111 22333333333322
Q ss_pred hhcC-CCChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhcc
Q 000134 506 KMLH-AEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSR 571 (2096)
Q Consensus 506 ~l~~-~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~ 571 (2096)
.+.. +++...+.++..++..||..+|.++.+++|+++..|.+..+..++.+ -+..-..+|+....
T Consensus 707 ~l~~~~~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll~~~~~~e~~~-fL~l~~qli~~f~~ 772 (980)
T 3ibv_A 707 ILDRMGFNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILLNSIDMNELVD-VLSFISQLIHIYKD 772 (980)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHHHHCCTTTHHH-HHHHHHHHHHHTTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHHHH
Confidence 2211 23566788899999999999999999999999999997666555322 23444446666653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.16 Score=57.40 Aligned_cols=152 Identities=9% Similarity=0.003 Sum_probs=112.1
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----hh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l~ 1118 (2096)
.++......+.|..|+-+++..+..... ....+..|..+|...++++........ ...+. ..
T Consensus 42 ~~a~~~~~~~~~~~A~~~~~~al~~~~~------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 42 QLGLGYLQRGNTEQAKVPLRKALEIDPS------------SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp HHHHHHHHTTCTGGGHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcCCC------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 6788889999999999999998764211 124567889999999999988887642 11221 12
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHc--cCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhc
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQ--MEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq--~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrl 1196 (2096)
.....+...|+|++|..+|+.+++ ..|.+......+-.|+...|+++....+.+......|.... .......+....
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~ 188 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS-VALEMADLLYKE 188 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH-HHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHH-HHHHHHHHHHHc
Confidence 244567899999999999999999 77888888888889999999999888877765554443322 223345667889
Q ss_pred CChhhHHHhhccc
Q 000134 1197 GRWDLMDEYLSGA 1209 (2096)
Q Consensus 1197 g~Wd~l~~~l~~~ 1209 (2096)
|+|+.-.+++...
T Consensus 189 g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 189 REYVPARQYYDLF 201 (252)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9998877766553
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.055 Score=60.57 Aligned_cols=188 Identities=9% Similarity=-0.028 Sum_probs=114.8
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----
Q 000134 1043 KVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS---- 1116 (2096)
Q Consensus 1043 ~~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s---- 1116 (2096)
...+|....+.+.|..|+-+++..+... |. ....+..+..+|...++++........ ...+.
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----~~-------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 93 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-----KE-------DAIPYINFANLLSSVNELERALAFYDKALELDSSAATA 93 (243)
T ss_dssp ----------------CCTTHHHHHTTC-----TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-----cc-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHH
Confidence 4467888899999999999999987632 11 134567889999999999988877642 11221
Q ss_pred hhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhc
Q 000134 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2096)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrl 1196 (2096)
.......+...|+|++|..+|+++++..|++......+-.|+...|+++....+.+......|+... .......+....
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 172 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE-ARFQFGMCLANE 172 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHH-HHHHHHHHHHHc
Confidence 1224456789999999999999999999999888888899999999999888877766555554322 223345667789
Q ss_pred CChhhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHH
Q 000134 1197 GRWDLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVS 1251 (2096)
Q Consensus 1197 g~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~a 1251 (2096)
|+|+.-.+++...-.. .+........+|.++ ...++..+..+.++++
T Consensus 173 ~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~--~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 173 GMLDEALSQFAAVTEQ------DPGHADAFYNAGVTY--AYKENREKALEMLDKA 219 (243)
T ss_dssp TCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHH--HHTTCTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh------CcccHHHHHHHHHHH--HHccCHHHHHHHHHHH
Confidence 9998877766543221 011122333444443 4456666555555443
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=96.14 E-value=1.6 Score=55.94 Aligned_cols=107 Identities=7% Similarity=0.006 Sum_probs=73.0
Q ss_pred HHHHHhhcccHHHHHHHHHHHhHhh---hhhhhhhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 000134 194 CIEFLLLNKRKAIRDAFCTQIGYFL---QDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMM 270 (2096)
Q Consensus 194 ~~~~~~~~~~r~vR~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~ 270 (2096)
.|..+ .+.|..++..+...++.++ .|+-++.+...| .+-.+-+.|...+++.+|+-..-+++.|..
T Consensus 62 ~v~~l-~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G----------~ip~LV~lL~~~~~~~lq~~Aa~aL~nias 130 (510)
T 3ul1_B 62 IVKGI-NSNNLESQLQATQAARKLLSREKQPPIDNIIRAG----------LIPKFVSFLGKTDCSPIQFESAWALTNIAS 130 (510)
T ss_dssp HHHHH-TSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTT----------HHHHHHHHTTCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHh-cCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCC----------CHHHHHHHHCCCCCHHHHHHHHHHHHHHhc
Confidence 44445 9999999999999998876 222222222222 355666666677889999988888888843
Q ss_pred hhcccchhHH--HHHHHHHHhhCCCCcchHHHHHHHHHHHhhh
Q 000134 271 AVDVHSQHFL--FLLILLVEQLDNPHVTVRMNASRLIRKSCFF 311 (2096)
Q Consensus 271 ~~~~~~e~~~--~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~ 311 (2096)
+.+.+...+. -++=.||..|.++++-|+-.|..-+.++|..
T Consensus 131 ~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d 173 (510)
T 3ul1_B 131 GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 173 (510)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 2222222221 1344689999999999999999999999754
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.28 Score=59.87 Aligned_cols=64 Identities=13% Similarity=0.020 Sum_probs=53.1
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhhc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLLN 1410 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~----~~----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~ 1410 (2096)
.....|...|.+..+.|+++.|...+.++... +. ..+....|+++...|+..+|+..+++++.-
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 301 VEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34667889999999999999999988887654 22 236778899999999999999999998763
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.56 Score=53.39 Aligned_cols=152 Identities=13% Similarity=0.037 Sum_probs=113.7
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH-hcc---CCh---
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-HKS---LSL--- 1117 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~-~~~---~sl--- 1117 (2096)
..|...+..|.|..|+-+++..+...+. ....+..|..+|..+++++........ ... +..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 75 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYN------------SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSA 75 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCC------------CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHH
Confidence 4678888999999999999998764321 113567888999999999987777542 221 122
Q ss_pred --hHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHh
Q 000134 1118 --QDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWR 1195 (2096)
Q Consensus 1118 --~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWr 1195 (2096)
......+...|++++|..+|+++++..|++......+-.|+..+|+++..+.+.+......|.....+..++ ...+.
T Consensus 76 ~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~-~~~~~ 154 (272)
T 3u4t_A 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG-QAYYY 154 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH-HHHHH
Confidence 345667899999999999999999999999988889999999999999998888876666665444333333 14566
Q ss_pred cCChhhHHHhhccc
Q 000134 1196 LGRWDLMDEYLSGA 1209 (2096)
Q Consensus 1196 lg~Wd~l~~~l~~~ 1209 (2096)
.++|+.-.+++...
T Consensus 155 ~~~~~~A~~~~~~a 168 (272)
T 3u4t_A 155 NKEYVKADSSFVKV 168 (272)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67887776665543
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=96.05 E-value=6 Score=53.57 Aligned_cols=149 Identities=12% Similarity=0.066 Sum_probs=87.9
Q ss_pred HHHHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhc
Q 000134 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLF 227 (2096)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~ 227 (2096)
..+.+.+.|-.+ +++++-++...|+.+ .+..+. .+-|-.-+ .+|.+++..||+.+..++..+-.+.--...+
T Consensus 116 ~i~~lv~~L~~~-~~~~r~~a~~~l~~~-----~~~~i~-~g~ip~Lv-~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i 187 (780)
T 2z6g_A 116 AHPTNVQRLAEP-SQMLKHAVVNLINYQ-----DDAELA-TRAIPELT-KLLNDEDQVVVNKAAVMVHQLSKKEASRHAI 187 (780)
T ss_dssp ----------CC-SCHHHHHHHHHHHHH-----HHHHHH-HHHHHHHH-HHHHCSCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred cHHHHHHHhcCc-cHHHHHHHHHHHHhh-----hHHHHH-hCCHHHHH-HHHCCCCHHHHHHHHHHHHHHhCCChhHHHH
Confidence 334455666554 667887777766643 122222 22333333 3458999999999999998864211100000
Q ss_pred cCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH-HHHHHHHHhhCCCCcchHHHHHHHHH
Q 000134 228 LDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFL-FLLILLVEQLDNPHVTVRMNASRLIR 306 (2096)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~-~~l~~Li~~L~~~n~~v~~~A~~~i~ 306 (2096)
. ....++..+-+.+...+|+.+++....++..+.........+.. -++-.|++.|.++++-++..|..-|.
T Consensus 188 ~--------~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~ 259 (780)
T 2z6g_A 188 M--------RSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLH 259 (780)
T ss_dssp T--------TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred H--------hccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 0 01246667777776677999999999999887432211111221 13445899999999999999999999
Q ss_pred HHhhhh
Q 000134 307 KSCFFH 312 (2096)
Q Consensus 307 ~l~~~~ 312 (2096)
++|...
T Consensus 260 nLa~~~ 265 (780)
T 2z6g_A 260 NLLLHQ 265 (780)
T ss_dssp HHHHHS
T ss_pred HHhCCC
Confidence 998764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.31 Score=53.38 Aligned_cols=151 Identities=16% Similarity=0.111 Sum_probs=107.4
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----hh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l~ 1118 (2096)
.++......|.|..|+.+++..+...+. ....+..+..+|...++.+........ ...+. ..
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 80 (225)
T 2vq2_A 13 QLAMEYMRGQDYRQATASIEDALKSDPK------------NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINN 80 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCcc------------chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHH
Confidence 5788889999999999999998764321 124567888999999998887776542 11221 12
Q ss_pred HHHHHhHhh-cCHHHHHHHHHHHHc--cCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHh
Q 000134 1119 DELLSNKKS-GNWAEVFTSCEQALQ--MEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWR 1195 (2096)
Q Consensus 1119 ~qil~~E~~-G~W~~A~~~YE~~Lq--~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWr 1195 (2096)
.....+... |+|++|..+|+.+++ ..|.+......+-.|+...|+++....+.+......|+.... ......+.+.
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~la~~~~~ 159 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPA-FKELARTKML 159 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH-HHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchH-HHHHHHHHHH
Confidence 244567788 999999999999998 566666777788889999999998877777655555543222 2234566778
Q ss_pred cCChhhHHHhhcc
Q 000134 1196 LGRWDLMDEYLSG 1208 (2096)
Q Consensus 1196 lg~Wd~l~~~l~~ 1208 (2096)
.|+|+.-.+++..
T Consensus 160 ~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 160 AGQLGDADYYFKK 172 (225)
T ss_dssp HTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 8998876665544
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=95.96 E-value=4.1 Score=53.30 Aligned_cols=185 Identities=10% Similarity=0.094 Sum_probs=107.4
Q ss_pred cCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhh
Q 000134 159 ESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNE 238 (2096)
Q Consensus 159 ~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (2096)
.+...|+...++.|.+|- ..++. ......|..++.|++..||.+|+..+..+.+ .. .+.-..
T Consensus 97 ~~n~~ir~~AL~~L~~i~---~~~~~----~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~---------~~--p~~~~~ 158 (591)
T 2vgl_B 97 DPNPLIRALAVRTMGCIR---VDKIT----EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHD---------IN--AQMVED 158 (591)
T ss_dssp SSSHHHHHHHHHHHHTCC---SGGGH----HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHH---------SS--CCCHHH
T ss_pred CCCHHHHHHHHHHHHcCC---hHHHH----HHHHHHHHHHcCCCChHHHHHHHHHHHHHHh---------hC--hhhccc
Confidence 455667777777777663 33321 1122345556799999999999999998652 11 222222
Q ss_pred HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhccc--chhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccc
Q 000134 239 LKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVH--SQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGG 316 (2096)
Q Consensus 239 ~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~--~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~ 316 (2096)
..++..+.+.+. -+|+.|+...+.++++|+...... -.+..-.+-.|+..|..+++..+....+.+..++. ..
T Consensus 159 ~~~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~---~~- 233 (591)
T 2vgl_B 159 QGFLDSLRDLIA-DSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNP---KD- 233 (591)
T ss_dssp HHHHHHHHHTTS-CSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCC---CS-
T ss_pred ccHHHHHHHHhC-CCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCC---CC-
Confidence 468889999775 578899999999999995432111 12233345667777778888877666554433321 10
Q ss_pred cccccchhhhhhhhhhHHHHHHhcCc-hHHHHHHHHHHhCCC-----hHHHHHhhcccccchhh
Q 000134 317 CELLVSKAVLICNELFDYLSVRLASR-PIMVREFAEAAFGVE-----TEELVKKMIPAVLPKLV 374 (2096)
Q Consensus 317 ~~l~~~~~~~~~~~l~~~~~~~l~~r-p~~~~~~~e~llg~~-----~~~fL~~~~~~~LP~LV 374 (2096)
... ...+.+++...+.+. |.+..+-+..+..+. ..+.+.....-+.|.||
T Consensus 234 -------~~~-~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~ 289 (591)
T 2vgl_B 234 -------DRE-AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLV 289 (591)
T ss_dssp -------HHH-HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHH
T ss_pred -------hHH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence 011 234556666656543 444455454344432 12444444444556555
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.13 Score=50.92 Aligned_cols=116 Identities=11% Similarity=0.024 Sum_probs=92.9
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
......|...|......|.++.|...+.++.... .+.+....|.++...|+..+|+..+++++...|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------- 78 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA---------- 78 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc----------
Confidence 4557789999999999999999999999987764 3567788999999999999999999998762110
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHH
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDD 1499 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~ 1499 (2096)
.+.++..+|......|+ .++.++.|.++++..|....+++.+|..+.+
T Consensus 79 --------------------------~~~~~~~~~~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 79 --------------------------YSKAYGRMGLALSSLNK--HVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp --------------------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred --------------------------CHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 03356666666665554 7889999999999999888889888887653
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.17 Score=58.92 Aligned_cols=62 Identities=15% Similarity=0.051 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~----~~----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
....|...|.+..+.|.++.|...+.+|... +. ..+....|++++..|+..+|+..+++++.
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 262 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3567888999999999999999988877544 33 23666789999999999999999999876
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.14 Score=55.29 Aligned_cols=136 Identities=14% Similarity=0.179 Sum_probs=105.1
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
.....|...|.+..+.|.++.|...+.++.... .+.+....+...+..++...|+..+++++...|.
T Consensus 37 ~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~----------- 105 (184)
T 3vtx_A 37 NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTV----------- 105 (184)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----------
Confidence 346789999999999999999999999987764 4567788899999999999999999988753210
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHH
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDA 1504 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~ 1504 (2096)
...++..+|......|+ .++.++.|+++++.+|....+|+.+|..|.+.
T Consensus 106 -------------------------~~~~~~~lg~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~---- 154 (184)
T 3vtx_A 106 -------------------------YADAYYKLGLVYDSMGE--HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK---- 154 (184)
T ss_dssp -------------------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT----
T ss_pred -------------------------chHHHHHHHHHHHHhCC--chhHHHHHHHHHHhcchhhhHHHHHHHHHHHC----
Confidence 02345555665555554 78899999999999999999999999887432
Q ss_pred HhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1505 RKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1505 ~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
| -...|+.+|-+++...+++
T Consensus 155 ----------g--------~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 155 ----------G--------LRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp ----------T--------CHHHHHHHHHHHHHTTHHH
T ss_pred ----------C--------CHHHHHHHHHHHHhCCccC
Confidence 1 1236888888888876653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.83 E-value=0.11 Score=50.44 Aligned_cols=112 Identities=10% Similarity=-0.062 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~ 1425 (2096)
....|...+......|.++.|...+.++.... .+.+....|.+++..|+..+|+..++++++..|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------ 70 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD------------ 70 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc------------
Confidence 35679999999999999999999999987764 4567888999999999999999999998763110
Q ss_pred ccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000134 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2096)
Q Consensus 1426 ~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~ 1497 (2096)
.+.++..+|......|+ .++..+.|+++++..|....+++.+|...
T Consensus 71 ------------------------~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 71 ------------------------WGKGYSRKAAALEFLNR--FEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp ------------------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred ------------------------cHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 03345666666555554 78889999999999999988888887653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.94 Score=53.55 Aligned_cols=260 Identities=14% Similarity=0.106 Sum_probs=143.8
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCc-hhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCCh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTS-VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~-~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~W 1199 (2096)
|...-+.|+.++|....+......|++ .+...-+.+++..+|+++.++...+.. ..|.. ..+ ..-.+..-..|++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~--~~~~~-~a~-~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS--SAPEL-QAV-RMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT--SCHHH-HHH-HHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc--CChhH-HHH-HHHHHHHcCCCcH
Confidence 344568999999999998777777776 456677889999999999998877652 22211 111 1112333355666
Q ss_pred hhHHHhhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhhHHhhhHHHHH-hh
Q 000134 1200 DLMDEYLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDSYTRAYPFIVK-LH 1278 (2096)
Q Consensus 1200 d~l~~~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eSy~r~y~~l~k-LH 1278 (2096)
+.--+.+...-.. ...+.+..+...+|.++ +..++..+..+.+++ + .+.. ++-.+.. +.
T Consensus 82 ~~A~~~l~~ll~~----~~~P~~~~~~~~la~~~--~~~g~~~~Al~~l~~----------~---~~~~-~~~~l~~~~~ 141 (291)
T 3mkr_A 82 DAIVAELDREMSR----SVDVTNTTFLLMAASIY--FYDQNPDAALRTLHQ----------G---DSLE-CMAMTVQILL 141 (291)
T ss_dssp HHHHHHHHHHHHS----CCCCSCHHHHHHHHHHH--HHTTCHHHHHHHHTT----------C---CSHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhc----ccCCCCHHHHHHHHHHH--HHCCCHHHHHHHHhC----------C---CCHH-HHHHHHHHHH
Confidence 5443333321000 00112233444455443 455665544443322 1 1111 1111111 11
Q ss_pred hhhHHHHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHH
Q 000134 1279 LLQELEDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKL 1358 (2096)
Q Consensus 1279 ~L~ELee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~Akl 1358 (2096)
.+.+.+++...+. +.. . ..|+. ....++..|+. +
T Consensus 142 ~~g~~~~A~~~l~--------------------~~~----~-~~p~~------------------~~~~l~~a~~~---l 175 (291)
T 3mkr_A 142 KLDRLDLARKELK--------------------KMQ----D-QDEDA------------------TLTQLATAWVS---L 175 (291)
T ss_dssp HTTCHHHHHHHHH--------------------HHH----H-HCTTC------------------HHHHHHHHHHH---H
T ss_pred HCCCHHHHHHHHH--------------------HHH----h-hCcCc------------------HHHHHHHHHHH---H
Confidence 2222232222211 100 0 01110 00112334443 3
Q ss_pred HHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCC
Q 000134 1359 CRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLP 1436 (2096)
Q Consensus 1359 ARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1436 (2096)
....|+++.|...+.++....+ +.+....|..+...|+..+|+..+++++...|.
T Consensus 176 ~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~----------------------- 232 (291)
T 3mkr_A 176 AAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG----------------------- 232 (291)
T ss_dssp HHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------------------
T ss_pred HhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------------
Confidence 4567899999999988877643 456677889999999999999999998863221
Q ss_pred cccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000134 1437 VLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2096)
Q Consensus 1437 ~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~we 1487 (2096)
-+.++.-+|......|+ ..+.+.+.++++.+++|...
T Consensus 233 -------------~~~~l~~l~~~~~~~g~-~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 233 -------------HPETLINLVVLSQHLGK-PPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp -------------CHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHCTTCH
T ss_pred -------------CHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCCCCh
Confidence 03345555655555665 34557788899999999764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.14 Score=51.29 Aligned_cols=115 Identities=10% Similarity=0.077 Sum_probs=92.5
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
......|...|....+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++++++..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---------- 82 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT---------- 82 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT----------
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC----------
Confidence 4567889999999999999999999999998765 3567888999999999999999999998763110
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d 1498 (2096)
.+.++..+|.-....|+ .++.++.|.++++..|....+++.+|..+.
T Consensus 83 --------------------------~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 83 --------------------------FIKGYTRKAAALEAMKD--YTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp --------------------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred --------------------------chHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 13355566665555554 788899999999999999889988887764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.12 Score=58.11 Aligned_cols=131 Identities=11% Similarity=0.032 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
...|...+....+.|+++.|...+.+|.... .+.+....|.++...|+..+|+..++++++-.|..
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~------------ 72 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRY------------ 72 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------------
Confidence 4578999999999999999999999998775 45688899999999999999999999988632210
Q ss_pred cCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHhccchHHHHHHHHh
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT-----------GQKQKEDVITLYSRVRELQPMWEKGYFYMAK 1495 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~-----------~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~ 1495 (2096)
+.++..+|...... | ..++.+..|++|++++|....+|+.+|.
T Consensus 73 ------------------------~~a~~~lg~~~~~~~~~~~~~~~~~g--~~~~A~~~~~~al~~~P~~~~~~~~lg~ 126 (217)
T 2pl2_A 73 ------------------------LGGYMVLSEAYVALYRQAEDRERGKG--YLEQALSVLKDAERVNPRYAPLHLQRGL 126 (217)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHTCSSHHHHHH--HHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHhhhhhhhhccccc--CHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 22333333333333 3 2577889999999999999999999988
Q ss_pred hhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccC
Q 000134 1496 YCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRG 1539 (2096)
Q Consensus 1496 y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g 1539 (2096)
.|... | -...++..|-+++...
T Consensus 127 ~~~~~--------------g--------~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 127 VYALL--------------G--------ERDKAEASLKQALALE 148 (217)
T ss_dssp HHHHT--------------T--------CHHHHHHHHHHHHHHC
T ss_pred HHHHc--------------C--------ChHHHHHHHHHHHhcc
Confidence 76422 1 1135777777777665
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.018 Score=61.26 Aligned_cols=105 Identities=14% Similarity=0.086 Sum_probs=81.5
Q ss_pred HHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCC
Q 000134 1356 AKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLN 1433 (2096)
Q Consensus 1356 AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 1433 (2096)
+.+.|+.|.++.|..++.+|....+ +...+..|+++...|+..+|+..++++++-.|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p--------------------- 62 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE--------------------- 62 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------------------
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------------
Confidence 4456777888999999988876532 34567789999999999999999999886322
Q ss_pred CCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000134 1434 PLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2096)
Q Consensus 1434 ~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d 1498 (2096)
..+.++..+|.-....|+ .++.+..|++|++++|+...+|+.+|..|-
T Consensus 63 ---------------~~~~a~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 110 (150)
T 4ga2_A 63 ---------------RDPKAHRFLGLLYELEEN--TDKAVECYRRSVELNPTQKDLVLKIAELLC 110 (150)
T ss_dssp ---------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ---------------CCHHHHHHHHHHHHHcCc--hHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 114567777877766665 788999999999999999999999998764
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=95.66 E-value=13 Score=52.10 Aligned_cols=168 Identities=14% Similarity=0.109 Sum_probs=96.4
Q ss_pred ccchhhHHHHHHHHhcCC--C-cchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhc----c-ccCCCCchhhHHHH
Q 000134 535 TTYVPKILVLLMHAINKE--S-LQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPF----L-ERDKDNPSVLLNKV 606 (2096)
Q Consensus 535 ~~~~pqI~a~L~~aL~~~--~-L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~----~-~~~~~~~~~~~~~~ 606 (2096)
.++.|+++..+..-.... . -....+.+...++..+. +.+.+.+.+++..+... + +.+.+.| .+++..
T Consensus 750 ~~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~----~~~~~~l~~i~~~l~~~~~~~i~~~~~~~p-d~~~~~ 824 (1049)
T 3m1i_C 750 KVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVG----HMIPQGVILILQSVFECTLDMINKDFTEYP-EHRVEF 824 (1049)
T ss_dssp HHTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHG----GGCHHHHHHHHHHHHHHHHHHHSSCSSSSH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHH----HhhhhhHHHHHHHHHHHHHHHHhcchhhCH-HHHHHH
Confidence 355677776655443221 0 01458899999999886 35666666666665433 3 2333333 456667
Q ss_pred HHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhc
Q 000134 607 VKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLK 686 (2096)
Q Consensus 607 ~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~ 686 (2096)
..++..++..+...+.. +| |. .+..-+...+..+.|....+...|++-|..++...
T Consensus 825 f~ll~~i~~~~~~~l~~-------~~--~~---------------~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~ 880 (1049)
T 3m1i_C 825 YKLLKVINEKSFAAFLE-------LP--PA---------------AFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNI 880 (1049)
T ss_dssp HHHHHHHHHHCTHHHHH-------SC--HH---------------HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHc-------CC--HH---------------HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Confidence 77777776665544421 11 11 12334556667888889999999999999988864
Q ss_pred HH----HHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhc
Q 000134 687 SE----DVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLG 737 (2096)
Q Consensus 687 ~~----~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG 737 (2096)
.. +.......... .+++..++..|.+.+.+..- +....+-.+.+.
T Consensus 881 ~~~~~~~~~~~f~~~~~--~~l~~~~~~~l~~~~h~s~~----~~~~~~l~~l~~ 929 (1049)
T 3m1i_C 881 ERMGNVPFANEFHKNYF--FIFVSETFFVLTDSDHKSGF----SKQALLLMKLIS 929 (1049)
T ss_dssp HHSCSCHHHHHHHHHHH--HHHHHHHHHHHHSTTCGGGH----HHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHH--HHHHHHHHHHHhcchHhhhH----HHHHHHHHHHHH
Confidence 32 11111111000 15777888888888765432 344445555443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.096 Score=58.54 Aligned_cols=113 Identities=17% Similarity=0.110 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHH----------------HHHHHHHcCCchHHHHHHHHHhhc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHME----------------KAKLLWSTRRSDGAIAELQQNLLN 1410 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE----------------~AKLLW~~g~~~~Ai~~L~~~i~~ 1410 (2096)
.+.++.-+....+.|.++.|...+.++....+ +.+... .|..+...|+..+|+..++++++.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45688889999999999999999999887653 345555 899999999999999999998863
Q ss_pred CCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHH
Q 000134 1411 KPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGY 1490 (2096)
Q Consensus 1411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~ 1490 (2096)
.|. .+.++..+|.-....|+ .++.+..|+++++++|....+|
T Consensus 84 ~p~------------------------------------~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~P~~~~a~ 125 (208)
T 3urz_A 84 APN------------------------------------NVDCLEACAEMQVCRGQ--EKDALRMYEKILQLEADNLAAN 125 (208)
T ss_dssp CTT------------------------------------CHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCC------------------------------------CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHH
Confidence 221 13456667776666665 7889999999999999999999
Q ss_pred HHHHhhhHH
Q 000134 1491 FYMAKYCDD 1499 (2096)
Q Consensus 1491 ~~la~y~d~ 1499 (2096)
+.+|..|-.
T Consensus 126 ~~lg~~~~~ 134 (208)
T 3urz_A 126 IFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988743
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.59 E-value=1.7 Score=54.09 Aligned_cols=87 Identities=14% Similarity=0.043 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCccccccc
Q 000134 1366 ETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQT 1443 (2096)
Q Consensus 1366 ~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 1443 (2096)
+.|.....+|.... .+.+....|.++...|+..+|+..++++++..+
T Consensus 317 ~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~------------------------------- 365 (472)
T 4g1t_A 317 GHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL------------------------------- 365 (472)
T ss_dssp HHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC-------------------------------
T ss_pred HHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC-------------------------------
Confidence 33444444444333 233455566777777777777777777764211
Q ss_pred chhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch
Q 000134 1444 LNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW 1486 (2096)
Q Consensus 1444 ~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~w 1486 (2096)
.......++..+|..... .....++.+..|.+|+++.|+.
T Consensus 366 --~~~~~~~~~~~~~~~~~~-~~~~~~~Ai~~y~kal~i~~~~ 405 (472)
T 4g1t_A 366 --TPVAKQLLHLRYGNFQLY-QMKCEDKAIHHFIEGVKINQKS 405 (472)
T ss_dssp --CHHHHHHHHHHHHHHHHH-TSSCHHHHHHHHHHHHHSCCCC
T ss_pred --CChHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCccc
Confidence 001112345556655432 2345788889999999988763
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.41 Score=53.46 Aligned_cols=120 Identities=12% Similarity=0.055 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccccc
Q 000134 1350 NCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2096)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~ 1427 (2096)
..|...+.+..+.|.++.|...+.+|....+ +.+....|.++...|+..+|+..++++++..|..
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------------- 109 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN------------- 109 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------------
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc-------------
Confidence 4677789999999999999999999988765 4578889999999999999999999988632210
Q ss_pred CCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc--hHHHHHHHHhhhHHH
Q 000134 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM--WEKGYFYMAKYCDDV 1500 (2096)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~--weK~~~~la~y~d~l 1500 (2096)
..-....+.++..+|......|+ .++.++.|++|++++|. ...+|+.+|..|-..
T Consensus 110 ----------------~~~~~~~~~~~~~~g~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 166 (228)
T 4i17_A 110 ----------------ATIEKLYAIYYLKEGQKFQQAGN--IEKAEENYKHATDVTSKKWKTDALYSLGVLFYNN 166 (228)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHhHHHHHhcc--HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 00122456788888988877765 89999999999999999 889999999987544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.26 Score=55.42 Aligned_cols=136 Identities=14% Similarity=0.014 Sum_probs=107.5
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHc-----------CCchHHHHHHHHHhhcCC
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWST-----------RRSDGAIAELQQNLLNKP 1412 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~-----------g~~~~Ai~~L~~~i~~~~ 1412 (2096)
+.....|...+.+..+.|+++.|...+.+|....+ +.+....+.++... |+..+|+..++++++..|
T Consensus 36 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P 115 (217)
T 2pl2_A 36 PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP 115 (217)
T ss_dssp SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc
Confidence 34567899999999999999999999999988754 45788889999999 999999999999876322
Q ss_pred cccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHH
Q 000134 1413 VEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFY 1492 (2096)
Q Consensus 1413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~ 1492 (2096)
..+.++..+|..+...|+ .++.+..|++|+++. ....+|+.
T Consensus 116 ------------------------------------~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~-~~~~~~~~ 156 (217)
T 2pl2_A 116 ------------------------------------RYAPLHLQRGLVYALLGE--RDKAEASLKQALALE-DTPEIRSA 156 (217)
T ss_dssp ------------------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred ------------------------------------ccHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhcc-cchHHHHH
Confidence 114466777777766665 789999999999999 88889999
Q ss_pred HHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1493 MAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1493 la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
+|..|-..= -...++..|-+++...+.+
T Consensus 157 la~~~~~~g----------------------~~~~A~~~~~~al~~~P~~ 184 (217)
T 2pl2_A 157 LAELYLSMG----------------------RLDEALAQYAKALEQAPKD 184 (217)
T ss_dssp HHHHHHHHT----------------------CHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHcC----------------------CHHHHHHHHHHHHHhCCCC
Confidence 998764320 1235788888888877664
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.26 Score=48.32 Aligned_cols=113 Identities=16% Similarity=0.182 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~ 1425 (2096)
....|...+....+.|.++.|...+.++.... .+.+....|..+...|+..+|+..+++++...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------------ 75 (125)
T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN------------ 75 (125)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc------------
Confidence 36789999999999999999999999987764 3457788899999999999999999988752110
Q ss_pred ccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000134 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2096)
Q Consensus 1426 ~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d 1498 (2096)
...++..+|......|+ .++..+.|.++.+..|....+++.+|..+.
T Consensus 76 ------------------------~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 76 ------------------------NAEAWYNLGNAYYKQGD--YDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp ------------------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ------------------------cHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 02245555665555554 788899999999999998888888877653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.16 Score=51.22 Aligned_cols=112 Identities=11% Similarity=-0.029 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
+.+..|...+....+.|.++.|.....+|....+ +.+....|..+...|+..+|+..+++++...|
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------------ 69 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP------------ 69 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------------
Confidence 3467899999999999999999999999987753 56788899999999999999999999876321
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc------cchHHHHHHHHhh
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQ------PMWEKGYFYMAKY 1496 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~------~~weK~~~~la~y 1496 (2096)
..++++..+|.-....|+ .++.+..|+++++++ |.....+..+++-
T Consensus 70 ------------------------~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 70 ------------------------NFVRAYIRKATAQIAVKE--YASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp ------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred ------------------------CcHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 013456666666655554 788899999999999 6666666555544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.095 Score=55.83 Aligned_cols=113 Identities=9% Similarity=-0.022 Sum_probs=92.0
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccc
Q 000134 1345 GAEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAIS 1422 (2096)
Q Consensus 1345 ~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~ 1422 (2096)
....+..|...+....+.|.++.|...+.+|.... .+.+....|..+...|+..+|+..+++++...|
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---------- 76 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP---------- 76 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----------
Confidence 34567889999999999999999999999998775 456788999999999999999999999876321
Q ss_pred cccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHh
Q 000134 1423 SITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAK 1495 (2096)
Q Consensus 1423 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~ 1495 (2096)
..+.++..+|.-....|+ .++.++.|+++++++|....+|+..|.
T Consensus 77 --------------------------~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 77 --------------------------KYSKAWSRLGLARFDMAD--YKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp --------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred --------------------------CCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 014466777776666654 788999999999999998887776554
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.46 E-value=3.6 Score=54.30 Aligned_cols=105 Identities=13% Similarity=0.089 Sum_probs=68.8
Q ss_pred HHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchh---hHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhc
Q 000134 197 FLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSN---ELKLLDVIKLAFTAADDPLILETLLESTAELMMAVD 273 (2096)
Q Consensus 197 ~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~ 273 (2096)
.+|.+++..||..++..+..+-.+. ..+.. ...++..+-+.+...+|+.+++....++..+.....
T Consensus 21 ~lL~~~~~~vr~~A~~~L~~La~~~-----------~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~ 89 (644)
T 2z6h_A 21 KLLNDEDQVVVNKAAVMVHQLSKKE-----------ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE 89 (644)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHTST-----------THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHCCC-----------hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChh
Confidence 3457888888988888888754111 11110 123455666666666788888888888887643221
Q ss_pred ccchhHH-HHHHHHHHhhCCCCcchHHHHHHHHHHHhhhh
Q 000134 274 VHSQHFL-FLLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2096)
Q Consensus 274 ~~~e~~~-~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~ 312 (2096)
....+.. -++-.|++.|.++++.++..|..-|.++|...
T Consensus 90 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~ 129 (644)
T 2z6h_A 90 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 129 (644)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Confidence 1111111 13456899999999999999999999998764
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.22 Score=57.17 Aligned_cols=153 Identities=12% Similarity=0.103 Sum_probs=109.2
Q ss_pred ChhhHHHHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhh
Q 000134 144 DFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVL 223 (2096)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~ 223 (2096)
+|.++-+.+.++|-+.....|+-+...+|..+.++...+. ..-....+.+|-..+.|++..||.+++.++..++++.
T Consensus 53 ~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~-~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-- 129 (242)
T 2qk2_A 53 EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF-SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST-- 129 (242)
T ss_dssp CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS--
T ss_pred CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC--
Confidence 3555666666666435677788899999999998766442 1111233445555569999999999999999987311
Q ss_pred hhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhc---ccchhHHHHHHHHHHhhCCCCcchHHH
Q 000134 224 SSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVD---VHSQHFLFLLILLVEQLDNPHVTVRMN 300 (2096)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~---~~~e~~~~~l~~Li~~L~~~n~~v~~~ 300 (2096)
.-..++..+..++.. ++|++++.++..++.+..... .....+...+=.|+..|..+++-||..
T Consensus 130 -------------~~~~ll~~l~~~l~~-~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~ 195 (242)
T 2qk2_A 130 -------------SLEAQQESIVESLSN-KNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDS 195 (242)
T ss_dssp -------------CHHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred -------------CHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 124577788887764 689999999999999754431 122334444555999999999999999
Q ss_pred HHHHHHHHhhhhc
Q 000134 301 ASRLIRKSCFFHL 313 (2096)
Q Consensus 301 A~~~i~~l~~~~~ 313 (2096)
|..-|-.+++.-.
T Consensus 196 A~~~l~~l~~~vg 208 (242)
T 2qk2_A 196 SAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcC
Confidence 9999999977663
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.082 Score=62.79 Aligned_cols=147 Identities=13% Similarity=0.054 Sum_probs=109.3
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCChh-HH
Q 000134 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLSLQ-DE 1120 (2096)
Q Consensus 1044 ~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~sl~-~q 1120 (2096)
..++....+-|.|..|+-+++. . . ..+.+-.+..+|..++++|........ ...++-. -+
T Consensus 105 ~~la~~~~~~g~~~~Al~~l~~-----~--~----------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~ 167 (291)
T 3mkr_A 105 LMAASIYFYDQNPDAALRTLHQ-----G--D----------SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQ 167 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTT-----C--C----------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHhC-----C--C----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHH
Confidence 3678888999999999999876 1 0 124567889999999999998887653 1122211 11
Q ss_pred H-----HHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHh
Q 000134 1121 L-----LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWR 1195 (2096)
Q Consensus 1121 i-----l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWr 1195 (2096)
+ ..+...|++++|..+|+.+++..|++.....++-.|+..+|+|+......+..+...|+....+..+ ..+.+.
T Consensus 168 l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l-~~~~~~ 246 (291)
T 3mkr_A 168 LATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINL-VVLSQH 246 (291)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHH
Confidence 1 1223459999999999999999999999888999999999999999888887777667655555444 357788
Q ss_pred cCChhh-HHHhhcc
Q 000134 1196 LGRWDL-MDEYLSG 1208 (2096)
Q Consensus 1196 lg~Wd~-l~~~l~~ 1208 (2096)
+|+++. ..+++.+
T Consensus 247 ~g~~~eaa~~~~~~ 260 (291)
T 3mkr_A 247 LGKPPEVTNRYLSQ 260 (291)
T ss_dssp TTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHH
Confidence 999964 5556543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.16 Score=53.69 Aligned_cols=150 Identities=10% Similarity=0.005 Sum_probs=109.1
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----hh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l~ 1118 (2096)
.++......+.|..|+.+++..+... |. ....+..+..+|...++++........ ...++ ..
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~-------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 80 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDAD-----AF-------DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVAT 80 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTT-----SC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-----cc-------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 56788889999999999998765431 11 234567889999999999987777542 11221 12
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCC
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~ 1198 (2096)
.....+...|+|++|..+|+.+++..|++......+-.|+...|+++....+.+......|+... .......+....|+
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~ 159 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGK-VHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchH-HHHHHHHHHHHcCC
Confidence 24456788999999999999999999999888888889999999999888877765555454322 22234556778888
Q ss_pred hhhHHHhhc
Q 000134 1199 WDLMDEYLS 1207 (2096)
Q Consensus 1199 Wd~l~~~l~ 1207 (2096)
|+.-.+++.
T Consensus 160 ~~~A~~~~~ 168 (186)
T 3as5_A 160 HEEALPHFK 168 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887665544
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=95.30 E-value=12 Score=49.37 Aligned_cols=130 Identities=11% Similarity=-0.033 Sum_probs=86.9
Q ss_pred ccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHH
Q 000134 161 SEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELK 240 (2096)
Q Consensus 161 ~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (2096)
.-+.+-.++-.+..+++..++..++ -+-++..-+.|++..+|-.|-+++..+-... --+.
T Consensus 87 ~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e---------------~~~~ 146 (621)
T 2vgl_A 87 RYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNPTFMGLALHCIANVGSRE---------------MAEA 146 (621)
T ss_dssp CHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHCCHH---------------HHHH
T ss_pred CHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccCCHH---------------HHHH
Confidence 3344444555555554433211111 2345666679999999999999999864211 1245
Q ss_pred HHHHHHHHhh-hcCChhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhc
Q 000134 241 LLDVIKLAFT-AADDPLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDNPHVTVRMNASRLIRKSCFFHL 313 (2096)
Q Consensus 241 ~~~~~~~~~~-~~~d~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~ 313 (2096)
++..+++.+. .-.+|-|.-+...++..+.+- ..|+.. -.+=.|.+.|+.+|+.|.+.|...+..+|....
T Consensus 147 l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~---~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 219 (621)
T 2vgl_A 147 FAGEIPKILVAGDTMDSVKQSAALCLLRLYRT---SPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP 219 (621)
T ss_dssp HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHH---CGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh---ChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh
Confidence 6667777663 356888999999999999662 344443 334556777889999999999999999988653
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.26 Score=50.32 Aligned_cols=113 Identities=17% Similarity=0.051 Sum_probs=89.7
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA-----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~-----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~ 1420 (2096)
......|...|..+.+.|.++.|...+.++....+ +.+....|..+...|+..+|+..++.++...|.
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------- 97 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG------- 97 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-------
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-------
Confidence 45678899999999999999999999999988764 456778899999999999999999998752110
Q ss_pred cccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000134 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2096)
Q Consensus 1421 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y 1496 (2096)
.+.++..+|.-....++ .++.++.|++++++.|.....+..+++.
T Consensus 98 -----------------------------~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 98 -----------------------------DVKALYRRSQALEKLGR--LDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred -----------------------------CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 03355666666555554 7888999999999999888777766554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.2 Score=57.05 Aligned_cols=55 Identities=18% Similarity=0.098 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHH
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAEL 1404 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~~~~~iE~AKLLW~~g~~~~Ai~~L 1404 (2096)
...|...|.+..+.|+++.|...+.++....+.+ ..+.+..++..|+..+|+..+
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVANNVHN-FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT-CHHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh-HHHHHHHHHHHHHHHhhHHHH
Confidence 5789999999999999999999999998775433 445577788888888888766
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=95.19 E-value=3.3 Score=54.51 Aligned_cols=106 Identities=15% Similarity=0.076 Sum_probs=66.2
Q ss_pred HHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 000134 192 IKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMA 271 (2096)
Q Consensus 192 ~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~ 271 (2096)
+.-|..++.|++..||.+|+.++..+.... . ...+.++..+.+.+. -+||.|+-..+..+++|+..
T Consensus 144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-----------p--~~v~~~~~~l~~lL~-D~d~~V~~~Al~~L~~i~~~ 209 (618)
T 1w63_A 144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKV-----------P--ELMEMFLPATKNLLN-EKNHGVLHTSVVLLTEMCER 209 (618)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-----------G--GGGGGGGGGTTTSTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-----------h--HHHHHHHHHHHHHhC-CCCHhHHHHHHHHHHHHHHh
Confidence 345566679999999999999999875210 0 111356667777554 47888999999999998532
Q ss_pred hcccchhH---HHHHHHHHHhh------------CCCCcchHHHHHHHHHHHhhh
Q 000134 272 VDVHSQHF---LFLLILLVEQL------------DNPHVTVRMNASRLIRKSCFF 311 (2096)
Q Consensus 272 ~~~~~e~~---~~~l~~Li~~L------------~~~n~~v~~~A~~~i~~l~~~ 311 (2096)
.....+.+ .-.++.++..+ +.+++.+.....+.+..++..
T Consensus 210 ~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~ 264 (618)
T 1w63_A 210 SPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRN 264 (618)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCC
Confidence 11000111 11233344433 346788888877777777543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.35 Score=54.03 Aligned_cols=133 Identities=11% Similarity=-0.021 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC---ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA---PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~---~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~ 1425 (2096)
...|...+....+.|.++.|.....++....+ +.+....|..+...|+..+|+..++++++..|
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------------- 73 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY------------- 73 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-------------
Confidence 46899999999999999999999999987764 34666789999999999999999999876321
Q ss_pred ccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHH-------HHHHHhhhH
Q 000134 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKG-------YFYMAKYCD 1498 (2096)
Q Consensus 1426 ~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~-------~~~la~y~d 1498 (2096)
..+.++..+|.-....|+ .++.++.|++++++.|..... |+.+|..+.
T Consensus 74 -----------------------~~~~~~~~l~~~~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~ 128 (228)
T 4i17_A 74 -----------------------NLANAYIGKSAAYRDMKN--NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQ 128 (228)
T ss_dssp -----------------------SHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------chHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHH
Confidence 124466677776665554 788999999999999987744 555554442
Q ss_pred HHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCc
Q 000134 1499 DVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHK 1541 (2096)
Q Consensus 1499 ~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~ 1541 (2096)
.. | -...|+..|-+++...+.
T Consensus 129 ~~--------------~--------~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 129 QA--------------G--------NIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HT--------------T--------CHHHHHHHHHHHTTSSCH
T ss_pred Hh--------------c--------cHHHHHHHHHHHHhcCCC
Confidence 11 1 124699999999998766
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.11 E-value=17 Score=51.53 Aligned_cols=329 Identities=16% Similarity=0.122 Sum_probs=193.1
Q ss_pred HHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHH-HHHHHHhcCCChHHHHHHHHHhccCChhHHHHHhHh
Q 000134 1048 RASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVS-FLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNKK 1126 (2096)
Q Consensus 1048 ~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~-~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~E~ 1126 (2096)
++=+.-+.|..||-.+|.-+.+.+... ....++ .|+...-..|=..+++-+.+.- .....+-....++
T Consensus 993 Kaf~~aglp~EaieLLEKivl~~s~fs----------~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd-~~d~~eIA~Iai~ 1061 (1630)
T 1xi4_A 993 KAFMTADLPNELIELLEKIVLDNSVFS----------EHRNLQNLLILTAIKADRTRVMEYINRLD-NYDAPDIANIAIS 1061 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCccc----------ccHHHHHHHHHHHHHhChhhHHHHHHHhh-hccHHHHHHHHHh
Confidence 333477889999999998774422000 011222 2333333334455555555543 4455666677889
Q ss_pred hcCHHHHHHHHHHHHccCCCchhhhhhHHHHH-HhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhhH-HH
Q 000134 1127 SGNWAEVFTSCEQALQMEPTSVQRHSDVLNCL-LNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLM-DE 1204 (2096)
Q Consensus 1127 ~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL-~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l-~~ 1204 (2096)
.|.+++|..+|+++- .... -+.-| .++|.|+....+++.... | ..|..+| .|-=..|+|+.- +.
T Consensus 1062 lglyEEAf~IYkKa~-----~~~~---A~~VLie~i~nldrAiE~Aervn~--p---~vWsqLA-KAql~~G~~kEAIds 1127 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFD-----VNTS---AVQVLIEHIGNLDRAYEFAERCNE--P---AVWSQLA-KAQLQKGMVKEAIDS 1127 (1630)
T ss_pred CCCHHHHHHHHHHcC-----CHHH---HHHHHHHHHhhHHHHHHHHHhcCC--H---HHHHHHH-HHHHhCCCHHHHHHH
Confidence 999999999999862 1111 12223 378999988888775421 2 3344332 233346788554 33
Q ss_pred hhcccCccCccccCCCCCcchhHHHHHHHHHHHccCchhHHHHHHHHHHHhhhhhhccchhh-HHhhhHHHHHhhhhhHH
Q 000134 1205 YLSGADEEGLLCSSSESNASFDMDVAKILQAMMKKDHFSVSDKIGVSKQVLIAPLAAAGMDS-YTRAYPFIVKLHLLQEL 1283 (2096)
Q Consensus 1205 ~l~~~~~~gl~~~~~~~~~~f~~~l~kaL~al~~~d~~~f~~~i~~aR~~l~~~Lsa~~~eS-y~r~y~~l~kLH~L~EL 1283 (2096)
|.. ++ +.+....++.+ +.+.++.++.-+.+..+|...-.+- .++ ..-+ .-++..+.|+
T Consensus 1128 YiK-Ad-----------D~say~eVa~~--~~~lGkyEEAIeyL~mArk~~~e~~----Idt~Lafa---YAKl~rleel 1186 (1630)
T 1xi4_A 1128 YIK-AD-----------DPSSYMEVVQA--ANTSGNWEELVKYLQMARKKARESY----VETELIFA---LAKTNRLAEL 1186 (1630)
T ss_pred HHh-cC-----------ChHHHHHHHHH--HHHcCCHHHHHHHHHHHHhhccccc----ccHHHHHH---HHhhcCHHHH
Confidence 322 21 12333445544 3556777777788887776431110 111 1111 1233455566
Q ss_pred HHHHHhhhccccccccCCCChHHHHHHHHHHHHHhhhccCChhhhhhHHHHHHhhcCcCCCCchhHHHHHHHHHHHHHcC
Q 000134 1284 EDFHAILVNDSFLEKSFLPSDLKFSKLMANWENRLKYTQPSLWAREPLLAFRRMVFGASGLGAEVGNCWLQYAKLCRLAG 1363 (2096)
Q Consensus 1284 ee~~~~~~~~~~~~~~~~~~~~~~~~l~~~W~~RL~~~~~~~~~~e~iLslRr~vl~~~~~~~~~~~~WL~~AklARKag 1363 (2096)
+++..- ... ..+. .|-.|+...+..-..... ..+ +..|.+.|+.--+.|
T Consensus 1187 e~fI~~------------~n~---ad~~-~iGd~le~eg~YeeA~~~---Y~k------------A~ny~rLA~tLvkLg 1235 (1630)
T 1xi4_A 1187 EEFING------------PNN---AHIQ-QVGDRCYDEKMYDAAKLL---YNN------------VSNFGRLASTLVHLG 1235 (1630)
T ss_pred HHHHhC------------CCH---HHHH-HHHHHHHhcCCHHHHHHH---HHh------------hhHHHHHHHHHHHhC
Confidence 655321 111 2233 477777766654333322 121 357999999999999
Q ss_pred ChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCccccccc
Q 000134 1364 HYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQT 1443 (2096)
Q Consensus 1364 ~~~~A~~all~a~~~~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~ 1443 (2096)
.++.|..+..+| +++.+..|.+-..-+.|+.+.|..+....+.+
T Consensus 1236 e~q~AIEaarKA---~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~--------------------------------- 1279 (1630)
T 1xi4_A 1236 EYQAAVDGARKA---NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH--------------------------------- 1279 (1630)
T ss_pred CHHHHHHHHHHh---CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcC---------------------------------
Confidence 999999999988 45566666666677788888888876542210
Q ss_pred chhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000134 1444 LNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2096)
Q Consensus 1444 ~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d 1498 (2096)
+..+.-+++|....|. .+++++.|.++..+++.+.-.|..+|..|-
T Consensus 1280 -------~deLeeli~yYe~~G~--feEAI~LlE~aL~LeraH~gmftELaiLya 1325 (1630)
T 1xi4_A 1280 -------ADELEELINYYQDRGY--FEELITMLEAALGLERAHMGMFTELAILYS 1325 (1630)
T ss_pred -------HHHHHHHHHHHHHcCC--HHHHHHHHHHHhccChhHhHHHHHHHHHHH
Confidence 2223345666665665 789999999999999887777777766654
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.28 Score=57.13 Aligned_cols=183 Identities=11% Similarity=0.149 Sum_probs=113.2
Q ss_pred CCCChHHHHHHHHHHHH-HHHHhcccc--ccchhhHHHHHHHHhc-CC--CcchhhhHHHHHHHHHhccCCCcchh-hHH
Q 000134 509 HAEDLSLQKQALKRIEI-LIEMIGSHL--TTYVPKILVLLMHAIN-KE--SLQCEGLSVLHFFIEQLSRVSPSSTK-HVI 581 (2096)
Q Consensus 509 ~~~~~~~k~~~l~sl~~-li~l~g~~v--~~~~pqI~a~L~~aL~-~~--~L~~~~l~~W~~fv~~L~~~~~~~l~-~ll 581 (2096)
.+.+-.+|+.++.+|.. +++=+...+ ..-..+++..|...|. .. ..+..|+.|...|...|.. ..+. ++.
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~---~~f~~~y~ 102 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT---PGFSKDYV 102 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT---TTSCHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc---ccccHHHH
Confidence 44567788888888777 764221222 2233588888999993 33 3688999999999988841 2477 888
Q ss_pred HHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhhhHHHHHHHHHhcCCCCHHHHHHHHH
Q 000134 582 SQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAALTEVNKAIQEARGPMTLKDQLLAAV 661 (2096)
Q Consensus 582 ~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~l~~v~~~l~~~r~~~~l~~~l~~~~ 661 (2096)
..++..++..+. +.....++.+..-+..++. ++... .+. ..+..-+..+.
T Consensus 103 ~~llp~ll~~l~---dkk~~V~~aa~~al~~i~~--------~~~~~--~~~-----------------~~l~~ll~~l~ 152 (249)
T 2qk1_A 103 SLVFTPLLDRTK---EKKPSVIEAIRKALLTICK--------YYDPL--ASS-----------------GRNEDMLKDIL 152 (249)
T ss_dssp HHHHHHHHHGGG---CCCHHHHHHHHHHHHHHHH--------HSCTT--CTT-----------------CTTHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHH--------Hcccc--ccC-----------------CcHHHHHHHHH
Confidence 888887776664 3222233333333333321 11110 010 01234455667
Q ss_pred hhccCCChhHHHHHHHHHHHHHhhcH---HHHHHHHhccCCCCchhH-HHHHHHHHHHhhhhccccchhhHHHHHHHhhc
Q 000134 662 DGLNHENLNVRYMVVCELSKLLKLKS---EDVTALINGEACSDLDVL-STLISSLLRGCAEESRTVVGQKLKLVCADCLG 737 (2096)
Q Consensus 662 ~~l~~en~~Vr~~aL~eL~~~L~~~~---~~l~~~~~~e~~~~~~vi-~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG 737 (2096)
..++|.|+.||.+++.-|..++.... +.+.. .+ ..++..|..+..+. +.++|..|.+|||
T Consensus 153 ~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~-----------~l~~~iip~l~~~l~D~-----~~~VR~aA~~~l~ 216 (249)
T 2qk1_A 153 EHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQR-----------YLKDEVVPIVIQIVNDT-----QPAIRTIGFESFA 216 (249)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHH-----------HHTTTHHHHHHHHHTCS-----SHHHHHHHHHHHH
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHH-----------HHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHH
Confidence 78889999999999999999987654 22322 23 34555555544432 3689999999999
Q ss_pred ccC
Q 000134 738 ALG 740 (2096)
Q Consensus 738 ~IG 740 (2096)
.|.
T Consensus 217 ~i~ 219 (249)
T 2qk1_A 217 ILI 219 (249)
T ss_dssp HHH
T ss_pred HHH
Confidence 954
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.04 E-value=14 Score=48.71 Aligned_cols=148 Identities=9% Similarity=0.083 Sum_probs=92.1
Q ss_pred HHHHHhhcccCccchhhHHHHHHHHHHccCCch-hhhhhhhHHHHHHHHHhhc-ccHHHHHHHHHHHhHhhhh-hhhhhh
Q 000134 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD-VLLKTRSEWIKCIEFLLLN-KRKAIRDAFCTQIGYFLQD-TVLSSL 226 (2096)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~-~~~~~~~~w~~~~~~~~~~-~~r~vR~a~~~~~~~~~~~-~~~~~~ 226 (2096)
+.+.++|.+ ...+|+..++..|.++..+...- ..... ...+..|-.+|.+ ++..+|.++++++..+-.+ .....+
T Consensus 17 ~~Lv~lL~~-~~~~vr~~A~~~L~~La~~~~~~~~i~~~-~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i 94 (644)
T 2z6h_A 17 PELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRS-PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 94 (644)
T ss_dssp HHHHHHHTC-SCHHHHHHHHHHHHHHHTSTTHHHHHTTC-HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHcC-CCHHHHHHHHHHHHHHHCCChhHHHHHhc-cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHH
Confidence 335566664 46689999999999999887522 11111 1233333333354 4899999999999876411 111112
Q ss_pred ccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH--HHHHHHHHHhhCCCCcchHHHHHHH
Q 000134 227 FLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF--LFLLILLVEQLDNPHVTVRMNASRL 304 (2096)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~--~~~l~~Li~~L~~~n~~v~~~A~~~ 304 (2096)
+.. ..+..+-+.+ ...|+.+++..+.+++.|........+.+ .-++=.|++.|.++++-++..|..-
T Consensus 95 ~~~----------g~i~~Lv~lL-~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~ 163 (644)
T 2z6h_A 95 FKS----------GGIPALVKML-GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 163 (644)
T ss_dssp HTT----------THHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred HHc----------CCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHH
Confidence 211 2344455533 34678899999999999854321122211 1245569999999999888888888
Q ss_pred HHHHhh
Q 000134 305 IRKSCF 310 (2096)
Q Consensus 305 i~~l~~ 310 (2096)
+.++|.
T Consensus 164 L~~La~ 169 (644)
T 2z6h_A 164 LQILAY 169 (644)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 888875
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.12 Score=69.37 Aligned_cols=115 Identities=16% Similarity=0.172 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
+....|...+.+..+.|+++.|..+..+|.++.+ +.+....+.++...|+..+|+..++++++-.|
T Consensus 41 ~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P------------ 108 (723)
T 4gyw_A 41 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP------------ 108 (723)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------
Confidence 4467899999999999999999999999988764 56888999999999999999999999886221
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHH
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDD 1499 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~ 1499 (2096)
..+.++..+|.-+...|+ .++.++.|++|++++|+...+|+.+|..|..
T Consensus 109 ------------------------~~~~a~~~Lg~~~~~~g~--~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 109 ------------------------AFADAHSNLASIHKDSGN--IPEAIASYRTALKLKPDFPDAYCNLAHCLQI 157 (723)
T ss_dssp ------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred ------------------------CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCChHHHhhhhhHHHh
Confidence 115567777777766665 8899999999999999999999999987754
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=94.91 E-value=0.47 Score=46.94 Aligned_cols=121 Identities=10% Similarity=-0.013 Sum_probs=92.5
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
+.+..|...+....+.|.++.|...+.++.... .+.+....|.++...|+..+|+..+++++...+.
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~----------- 70 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRE----------- 70 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----------
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccc-----------
Confidence 457789999999999999999999999988765 3567788999999999999999999998762110
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHH
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDD 1499 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~ 1499 (2096)
+ .......+.++..+|......|+ .++..+.|.++.+..|. ...+..++.....
T Consensus 71 --------~----------~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~ 124 (131)
T 1elr_A 71 --------N----------REDYRQIAKAYARIGNSYFKEEK--YKDAIHFYNKSLAEHRT-PDVLKKCQQAEKI 124 (131)
T ss_dssp --------S----------TTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred --------c----------chhHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence 0 00112336677788877766664 78899999999999884 6667777665543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.1 Score=53.67 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=58.6
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----hh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l~ 1118 (2096)
-++...++-|.|..|+-+++..+...+. ....+..+..+|..+++.+........ ...++ ..
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRDPE------------NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 3678889999999999999998764321 123455566666666665554444321 11111 11
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHH
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCL 1158 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL 1158 (2096)
.....|...|+|++|..+|+++++..|++.+.+.++-+||
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 2334455566666666666666666666555555555543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.56 Score=53.72 Aligned_cols=113 Identities=11% Similarity=0.025 Sum_probs=85.8
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccc
Q 000134 1345 GAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA-----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGST 1419 (2096)
Q Consensus 1345 ~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~-----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~ 1419 (2096)
.......+...|....+.|.++.|...+.++....+ +.+.+..|..++..|+..+|+..+++.++..|.
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~------ 84 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI------ 84 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC------
Confidence 344567899999999999999999999999987642 457889999999999999999999999874321
Q ss_pred ccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhccchHHHH
Q 000134 1420 AISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTG------QKQKEDVITLYSRVRELQPMWEKGY 1490 (2096)
Q Consensus 1420 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~------~~~~~~i~~~Y~~a~~l~~~weK~~ 1490 (2096)
++..+.++..+|.-....+ ....++.+..|+++++..|....++
T Consensus 85 ---------------------------~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 134 (261)
T 3qky_A 85 ---------------------------DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD 134 (261)
T ss_dssp ---------------------------CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred ---------------------------CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH
Confidence 1122445666666554411 3347888999999999999765554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.79 E-value=0.39 Score=52.76 Aligned_cols=116 Identities=12% Similarity=-0.056 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CC----------------hHHHHHHHHHHHcCCchHHHHHHHHHh
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--AP----------------NVHMEKAKLLWSTRRSDGAIAELQQNL 1408 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~----------------~~~iE~AKLLW~~g~~~~Ai~~L~~~i 1408 (2096)
..+..|...+..+.+.|.++.|.....+|.... .+ .+....|..+...|+..+|+..++.++
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 456779999999999999999999999998763 34 677888999999999999999999987
Q ss_pred hcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHH
Q 000134 1409 LNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEK 1488 (2096)
Q Consensus 1409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK 1488 (2096)
...| ..++++..+|.-....|+ .++.++.|+++++++|....
T Consensus 116 ~~~p------------------------------------~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~p~~~~ 157 (198)
T 2fbn_A 116 KIDK------------------------------------NNVKALYKLGVANMYFGF--LEEAKENLYKAASLNPNNLD 157 (198)
T ss_dssp HHST------------------------------------TCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHSTTCHH
T ss_pred HhCc------------------------------------ccHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHCCCcHH
Confidence 6211 114466677776666665 78889999999999999999
Q ss_pred HHHHHHhhhHHH
Q 000134 1489 GYFYMAKYCDDV 1500 (2096)
Q Consensus 1489 ~~~~la~y~d~l 1500 (2096)
++..++..+..+
T Consensus 158 ~~~~l~~~~~~~ 169 (198)
T 2fbn_A 158 IRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999998877654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.25 Score=52.26 Aligned_cols=115 Identities=16% Similarity=0.087 Sum_probs=88.4
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
.+....|+..|++-.+.|.++.|...+.+|.... .+.+....+.++...|+..+|+..++++++-.|.
T Consensus 28 p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---------- 97 (150)
T 4ga2_A 28 RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT---------- 97 (150)
T ss_dssp HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----------
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC----------
Confidence 3455678999999999999999999999998875 4678889999999999999999999998863221
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~ 1497 (2096)
.+.++..+|.-+...++.. +.+...+++|++++|+...+|.-.++.+
T Consensus 98 --------------------------~~~~~~~la~~~~~~~~~~-~aa~~~~~~al~l~P~~~~~~~l~~~ll 144 (150)
T 4ga2_A 98 --------------------------QKDLVLKIAELLCKNDVTD-GRAKYWVERAAKLFPGSPAVYKLKEQLL 144 (150)
T ss_dssp --------------------------CHHHHHHHHHHHHHHCSSS-SHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred --------------------------CHHHHHHHHHHHHHcCChH-HHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence 1345677777666666532 2333445899999999888877666554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.56 Score=47.47 Aligned_cols=102 Identities=11% Similarity=0.052 Sum_probs=82.6
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
...+..|...+....+.|.++.|...+.++....+ +.+....|.++...|+..+|+..+++++...|
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p----------- 74 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG----------- 74 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-----------
Confidence 34578899999999999999999999999887753 56788999999999999999999999876211
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~ 1485 (2096)
..+.++..+|......|+ .++.+..|++++++.|.
T Consensus 75 -------------------------~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 75 -------------------------QSVKAHFFLGQCQLEMES--YDEAIANLQRAYSLAKE 109 (137)
T ss_dssp -------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHH
T ss_pred -------------------------hhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHChh
Confidence 013456677776666664 78889999999999887
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=94.38 E-value=0.53 Score=49.01 Aligned_cols=112 Identities=12% Similarity=-0.016 Sum_probs=88.5
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
+.+..|...|....+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++++++..|.
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----------- 79 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK----------- 79 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----------
Confidence 456789999999999999999999999988765 3567788899999999999999999998763110
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y 1496 (2096)
.+.++..+|......|+ .++.++.|.++++..|....++..++..
T Consensus 80 -------------------------~~~~~~~~a~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 124 (166)
T 1a17_A 80 -------------------------YIKGYYRRAASNMALGK--FRAALRDYETVVKVKPHDKDAKMKYQEC 124 (166)
T ss_dssp -------------------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred -------------------------cHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 13356666666655554 7889999999999999887777655543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=94.35 E-value=0.36 Score=59.83 Aligned_cols=139 Identities=9% Similarity=0.029 Sum_probs=106.6
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCC-chHHHHHHHHHhhcCCcccccccc
Q 000134 1344 LGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRR-SDGAIAELQQNLLNKPVEVVGSTA 1420 (2096)
Q Consensus 1344 ~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~-~~~Ai~~L~~~i~~~~~~~~~~~~ 1420 (2096)
+.......|...+.+..+.|+++.|.....+|..+.+ +.+....+.++...|+ ..+|+..+++++...|.
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~------- 164 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------- 164 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-------
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-------
Confidence 4567788899999999999999999999999988764 4577889999999997 99999999998863221
Q ss_pred cccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000134 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2096)
Q Consensus 1421 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l 1500 (2096)
.+.++..+|.-+...|+ .++.+..|++|++++|+...+|+++|..+.++
T Consensus 165 -----------------------------~~~a~~~~g~~~~~~g~--~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~ 213 (382)
T 2h6f_A 165 -----------------------------NYQVWHHRRVLVEWLRD--PSQELEFIADILNQDAKNYHAWQHRQWVIQEF 213 (382)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHTC--CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred -----------------------------CHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc
Confidence 13345555555555554 56788899999999999999999998877543
Q ss_pred HHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1501 LVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1501 ~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
= . ...++.+|-+++...+.+
T Consensus 214 g--------------~--------~~eAl~~~~~al~l~P~~ 233 (382)
T 2h6f_A 214 K--------------L--------WDNELQYVDQLLKEDVRN 233 (382)
T ss_dssp T--------------C--------CTTHHHHHHHHHHHCTTC
T ss_pred C--------------C--------hHHHHHHHHHHHHhCCCC
Confidence 0 0 014788888888776654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=94.32 E-value=0.3 Score=59.09 Aligned_cols=117 Identities=14% Similarity=-0.004 Sum_probs=96.3
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-----------------hHHHHHHHHHHHcCCchHHHHHHHHHh
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP-----------------NVHMEKAKLLWSTRRSDGAIAELQQNL 1408 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~-----------------~~~iE~AKLLW~~g~~~~Ai~~L~~~i 1408 (2096)
...+..|...+....+.|.++.|.....+|..+.+. .+....|.++...|+..+|+..+++++
T Consensus 144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356778999999999999999999999999877532 577889999999999999999999987
Q ss_pred hcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHH
Q 000134 1409 LNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEK 1488 (2096)
Q Consensus 1409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK 1488 (2096)
...| ..++++..+|.-+...|+ .++.+..|++|++++|....
T Consensus 224 ~~~p------------------------------------~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~P~~~~ 265 (336)
T 1p5q_A 224 ELDS------------------------------------NNEKGLSRRGEAHLAVND--FELARADFQKVLQLYPNNKA 265 (336)
T ss_dssp HHCT------------------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCSSCHH
T ss_pred HhCC------------------------------------CcHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHCCCCHH
Confidence 6211 114567777776666664 78899999999999999999
Q ss_pred HHHHHHhhhHHH
Q 000134 1489 GYFYMAKYCDDV 1500 (2096)
Q Consensus 1489 ~~~~la~y~d~l 1500 (2096)
+++.+|..+.++
T Consensus 266 a~~~l~~~~~~~ 277 (336)
T 1p5q_A 266 AKTQLAVCQQRI 277 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=94.30 E-value=0.59 Score=46.05 Aligned_cols=113 Identities=14% Similarity=0.176 Sum_probs=56.2
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----hh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l~ 1118 (2096)
.++......+.|..|+.+++..+...+. ....+..+..+|...++++........ ...+. ..
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 73 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELDPR------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY 73 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcCCc------------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHH
Confidence 4677778889999999999987653210 112333445555555554444443321 00111 11
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHH
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVT 1169 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~ 1169 (2096)
.....+...|+|++|..+|+.+++..|++......+..++...|+++....
T Consensus 74 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 124 (136)
T 2fo7_A 74 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 124 (136)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHH
Confidence 122234445555555555555555555444444444444445555444433
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=94.30 E-value=0.18 Score=53.97 Aligned_cols=95 Identities=11% Similarity=0.034 Sum_probs=74.4
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~ 1124 (2096)
.++...++-|.|..|+-+++.-+... | ++++.+.++.. .+
T Consensus 41 ~lg~~~~~~g~~~eA~~~~~~al~~~-----P-----------------------~~~~~~~~lg~------------~~ 80 (151)
T 3gyz_A 41 SYAYDFYNKGRIEEAEVFFRFLCIYD-----F-----------------------YNVDYIMGLAA------------IY 80 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----T-----------------------TCHHHHHHHHH------------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-----C-----------------------CCHHHHHHHHH------------HH
Confidence 56788888999999999999876542 2 23444444322 35
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccCh
Q 000134 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2096)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p 1179 (2096)
...|++++|..+|+++++..|++...+.++=.|+..+|+++..+...+..+...|
T Consensus 81 ~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 81 QIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 6889999999999999999999999999999999999999988887776554444
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.4 Score=62.14 Aligned_cols=139 Identities=17% Similarity=0.138 Sum_probs=107.9
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
.....|...|.+..+.|+++.|...+.+|.+..+ +.+....|.++...|+..+|+..++++++..|.
T Consensus 21 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----------- 89 (568)
T 2vsy_A 21 QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE----------- 89 (568)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----------
Confidence 4467899999999999999999999999988753 567889999999999999999999998763210
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHH
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDA 1504 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~ 1504 (2096)
.+.++..+|......|+ .++.++.|+++.+++|....+++.+|..|...-
T Consensus 90 -------------------------~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--- 139 (568)
T 2vsy_A 90 -------------------------HPGIALWLGHALEDAGQ--AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC--- 139 (568)
T ss_dssp -------------------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT---
T ss_pred -------------------------CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh---
Confidence 13456667776666665 788999999999999999899999988764320
Q ss_pred HhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1505 RKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1505 ~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
..| -...++..|-+++..++..
T Consensus 140 --------~~g--------~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 140 --------DWR--------ALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp --------CCT--------THHHHHHHHHHHHHHTCCC
T ss_pred --------ccc--------cHHHHHHHHHHHHhcCCcc
Confidence 001 1235788888888877664
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=94.21 E-value=3.4 Score=57.22 Aligned_cols=167 Identities=9% Similarity=0.078 Sum_probs=99.9
Q ss_pred cchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhh------cccHHHHHHHHHHHhHhhhhhhhhhhccCccc--c
Q 000134 162 EEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLL------NKRKAIRDAFCTQIGYFLQDTVLSSLFLDENA--S 233 (2096)
Q Consensus 162 ~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~------~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~--~ 233 (2096)
+.++.+....|..+..+-. +..+..-.+++ ...+. +++=..|+|+-..+.++.+.-. .+ ..+-. .
T Consensus 375 ~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i---~~~l~~~~~~~~~~w~~reaal~algaia~~~~-~~--~~~~~~~~ 447 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNE-VLVTNIFLAHM---KGFVDQYMSDPSKNWKFKDLYIYLFTALAINGN-IT--NAGVSSTN 447 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCH-HHHHHHHHHHH---HHHHHHHHC----CHHHHHHHHHHHHHHHBSSC-CB--TTBCCCBC
T ss_pred cCcHHHHHHHHHHHHHHcc-hhHHHHHHHHH---HHHHHHhccCcchhHHHHHHHHHHHHHHHHHhc-cc--cCCccccc
Confidence 3677888888888887765 33333322332 22223 4555688999888888641100 00 00000 0
Q ss_pred cchhhHHHHH-HHHHHhhhc--CChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhh
Q 000134 234 SRSNELKLLD-VIKLAFTAA--DDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCF 310 (2096)
Q Consensus 234 ~~~~~~~~~~-~~~~~~~~~--~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~ 310 (2096)
..-.-..||. .+...+... .+|.++-+.+.++|++ +...+.|.+.-++=.|+..|.++++.|+..|..-|.++|.
T Consensus 448 ~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~--~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 448 NLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTF--RNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp TTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHT--GGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHH--HhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 0013344443 344444444 3899999999999998 4456778777777789999999999999999999999988
Q ss_pred hhc---ccc----cccccchhhhhhhhhhHHHHH
Q 000134 311 FHL---KGG----CELLVSKAVLICNELFDYLSV 337 (2096)
Q Consensus 311 ~~~---~~~----~~l~~~~~~~~~~~l~~~~~~ 337 (2096)
... .+. -+.+.++...+...|+..+.+
T Consensus 526 ~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~ 559 (960)
T 1wa5_C 526 IRESNTSPAFIFHKEDISNSTEILLKNLIALILK 559 (960)
T ss_dssp CBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHT
T ss_pred cccccccccccccHHHhhhhHHHHHHHHHHHHHh
Confidence 532 000 123456665555555544433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.20 E-value=0.19 Score=51.25 Aligned_cols=98 Identities=12% Similarity=0.205 Sum_probs=71.8
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHH
Q 000134 1043 KVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELL 1122 (2096)
Q Consensus 1043 ~~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil 1122 (2096)
.-.++...++-|.|..|+.+++.-+...+ +.+++...+. .
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P----------------------------~~~~a~~~lg------------~ 59 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEP----------------------------EREEAWRSLG------------L 59 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST----------------------------TCHHHHHHHH------------H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC----------------------------CCHHHHHHHH------------H
Confidence 34678888999999999999998876421 1122222221 2
Q ss_pred HhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChh
Q 000134 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2096)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~ 1180 (2096)
.+...|++++|..+|+++++..|++...+..+-.|+..+|+++..+...+..+...|+
T Consensus 60 ~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 60 TQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 2446789999999999999999999998888889999999999887777766555553
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.94 Score=49.64 Aligned_cols=132 Identities=8% Similarity=-0.085 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCC
Q 000134 1350 NCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSL 1429 (2096)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~all~a~~~~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~ 1429 (2096)
..+...|....+.|.++.|...+.++.. ..+.+....|..++..|+..+|+..+++++...|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~----------------- 68 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQD-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK----------------- 68 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----------------
Confidence 3467888999999999999999998852 3567888999999999999999999999876211
Q ss_pred CCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH----------------HHHHHH
Q 000134 1430 VPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE----------------KGYFYM 1493 (2096)
Q Consensus 1430 ~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~we----------------K~~~~l 1493 (2096)
..+.++..+|......|+ .++.++.|+++++..|... .+|+.+
T Consensus 69 -------------------~~~~~~~~lg~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (213)
T 1hh8_A 69 -------------------HLAVAYFQRGMLYYQTEK--YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNI 127 (213)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHH
T ss_pred -------------------cchHHHHHHHHHHHHccc--HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHH
Confidence 013456677776666554 7889999999999666543 888888
Q ss_pred HhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1494 AKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1494 a~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
|..|.+. | -...|+..|-+++...++.
T Consensus 128 ~~~~~~~--------------g--------~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 128 AFMYAKK--------------E--------EWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHT--------------T--------CHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHc--------------c--------CHHHHHHHHHHHHHcCccc
Confidence 8876432 0 1235778888888776654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.49 Score=48.47 Aligned_cols=109 Identities=8% Similarity=-0.022 Sum_probs=86.5
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
.+.+..|-..+....+.|.++.|.....+|..+.+ +.+..-.|..+...|+..+|+..++++++-.|.
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~---------- 74 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRE---------- 74 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcc----------
Confidence 35667788889999999999999999999988764 456778899999999999999999998862110
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~ 1485 (2096)
. .......|+++..+|......++ .++.++.|++|++.+|+
T Consensus 75 ---------~----------~~~~~~~a~~~~~lg~~~~~~~~--~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 75 ---------T----------RADYKLIAKAMSRAGNAFQKQND--LSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp ---------T----------TCCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSCC
T ss_pred ---------c----------chhhHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCcC
Confidence 0 01123568899999998877765 78888999999888775
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.3 Score=62.12 Aligned_cols=118 Identities=8% Similarity=0.060 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHHHHcCCh-HHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHY-ETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~-~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
..+..|...+++....|.+ +.|...+.+|.+..+ +.+....|.+++..|+..+|+..++++++..|.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------- 169 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN---------- 169 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC----------
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----------
Confidence 4577899999999999999 999999999987753 568889999999999999999999998763210
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQ-------KQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~-------~~~~~i~~~Y~~a~~l~~~weK~~~~la~y 1496 (2096)
+.++..+|.-+...+. ...++.++.|++|++++|....+|+.+|..
T Consensus 170 ---------------------------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 222 (474)
T 4abn_A 170 ---------------------------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNA 222 (474)
T ss_dssp ---------------------------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1233334433322200 125678899999999999999999999998
Q ss_pred hHHHH
Q 000134 1497 CDDVL 1501 (2096)
Q Consensus 1497 ~d~l~ 1501 (2096)
|-..+
T Consensus 223 ~~~~~ 227 (474)
T 4abn_A 223 YLSLY 227 (474)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87663
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=93.85 E-value=0.68 Score=45.64 Aligned_cols=110 Identities=16% Similarity=0.245 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccccc
Q 000134 1350 NCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSL 1427 (2096)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~ 1427 (2096)
..|...+......|.++.|...+.++.... .+......|.++...|+..+|+..+++++...+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-------------- 67 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-------------- 67 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC--------------
Confidence 468889999999999999999999887654 3456677899999999999999999988752110
Q ss_pred CCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000134 1428 SLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2096)
Q Consensus 1428 ~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~ 1497 (2096)
...++..+|......| +.++..+.|.++++..|....+|+.+|..|
T Consensus 68 ----------------------~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 113 (136)
T 2fo7_A 68 ----------------------SAEAWYNLGNAYYKQG--DYDEAIEYYQKALELDPRSAEAWYNLGNAY 113 (136)
T ss_dssp ----------------------CHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ----------------------chHHHHHHHHHHHHhc--CHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 0223445555444444 478889999999999998888888888765
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.62 E-value=0.6 Score=45.20 Aligned_cols=96 Identities=7% Similarity=0.085 Sum_probs=67.5
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~ 1124 (2096)
.++......+.|..|+.+++..+...+ ++++....+ ...+
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~~~----------------------------~~~~~~~~~------------a~~~ 48 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKLDP----------------------------HNHVLYSNR------------SAAY 48 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT----------------------------TCHHHHHHH------------HHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCC----------------------------CcHHHHHHH------------HHHH
Confidence 467788888999999999988765321 112222222 2235
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChh
Q 000134 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2096)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~ 1180 (2096)
...|+|++|..+|+++++..|++......+-.|+..+|+++....+.+......|+
T Consensus 49 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 49 AKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 56788899999999888888888777777778888888888877766655554443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.38 Score=64.15 Aligned_cols=137 Identities=14% Similarity=-0.003 Sum_probs=106.8
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
.+....|+..|.+..+.|+++.|...+.+|.+.. .+.+....+.++...|+..+|+..++++++-.|.
T Consensus 430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---------- 499 (681)
T 2pzi_A 430 SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG---------- 499 (681)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT----------
T ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------
Confidence 3456789999999999999999999999988764 4568889999999999999999999999863221
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHH
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVD 1503 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~ 1503 (2096)
+ +.++..+|.-....|+. ++ ++.|++|++++|....+|+.+|.-|.+.
T Consensus 500 ---------~-----------------~~~~~~lg~~~~~~g~~--~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~--- 547 (681)
T 2pzi_A 500 ---------E-----------------LAPKLALAATAELAGNT--DE-HKFYQTVWSTNDGVISAAFGLARARSAE--- 547 (681)
T ss_dssp ---------C-----------------SHHHHHHHHHHHHHTCC--CT-TCHHHHHHHHCTTCHHHHHHHHHHHHHT---
T ss_pred ---------C-----------------hHHHHHHHHHHHHcCCh--HH-HHHHHHHHHhCCchHHHHHHHHHHHHHc---
Confidence 0 23455566656666653 45 7899999999999999999999876432
Q ss_pred HHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcch
Q 000134 1504 ARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNL 1543 (2096)
Q Consensus 1504 ~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~~ 1543 (2096)
| -...|+..|-+++...+.+.
T Consensus 548 -----------g--------~~~~A~~~~~~al~l~P~~~ 568 (681)
T 2pzi_A 548 -----------G--------DRVGAVRTLDEVPPTSRHFT 568 (681)
T ss_dssp -----------T--------CHHHHHHHHHTSCTTSTTHH
T ss_pred -----------C--------CHHHHHHHHHhhcccCcccH
Confidence 1 12368889999998887753
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=93.58 E-value=0.7 Score=45.54 Aligned_cols=107 Identities=11% Similarity=0.116 Sum_probs=56.7
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----hh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l~ 1118 (2096)
.++......+.|..|+.+++..+..... ....+..+..+|...++++........ ...++ ..
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 84 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIELNPA------------NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYG 84 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCC------------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHH
Confidence 6788888999999999999987764211 112344555555555555544444321 11111 11
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccC
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCH 1163 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq 1163 (2096)
.....+...|+|++|..+|+.+++..|++......+-.|+..+|+
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 122344555555555555555555555544444444444444443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=93.56 E-value=1.1 Score=47.13 Aligned_cols=113 Identities=13% Similarity=0.031 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~ 1425 (2096)
....|...+.+..+.|.++.|...+.++.... .+.+....|.++...|+..+|+..+++++...+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~------------ 108 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI------------ 108 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH------------
Confidence 35678888999999999999999888887664 3457778888999999999999999887652110
Q ss_pred ccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000134 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2096)
Q Consensus 1426 ~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d 1498 (2096)
.+.++..+|......|+ .++..+.|.++++..|....+|+.+|..|.
T Consensus 109 ------------------------~~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 155 (186)
T 3as5_A 109 ------------------------NFNVRFRLGVALDNLGR--FDEAIDSFKIALGLRPNEGKVHRAIAFSYE 155 (186)
T ss_dssp ------------------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ------------------------hHHHHHHHHHHHHHcCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 02345555655554443 778888899999999888888888888764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.84 Score=45.59 Aligned_cols=107 Identities=16% Similarity=0.061 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CC---hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1350 NCWLQYAKLCRLAGHYETATRAILEAQASG--AP---NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~all~a~~~~--~~---~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
+.+...|....+.|.++.|...+.++.... .+ .+....|..+...|+..+|+..++..++..|.
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~----------- 71 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT----------- 71 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-----------
Confidence 347788999999999999999999887653 33 57888999999999999999999998763221
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHH
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYF 1491 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~ 1491 (2096)
+...+.++..+|......|+ .++.++.|+++++..|....+..
T Consensus 72 ----------------------~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 72 ----------------------HDKAAGGLLKLGLSQYGEGK--NTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp ----------------------STTHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTSHHHHH
T ss_pred ----------------------CcccHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCCCChHHHH
Confidence 11234567777877766665 78889999999999987655443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=93.48 E-value=2 Score=54.09 Aligned_cols=59 Identities=14% Similarity=0.058 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
..+|....-.|...|.+..|..+.++.. ..|+-..+-..++-+.|+..+||..|++++.
T Consensus 177 ~~~Wk~v~~aCv~~~ef~lA~~~~l~L~--~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 177 TRTWKEVCFACVDGKEFRLAQMCGLHIV--VHADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHTTTTTT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHcCcHHHHHHHHHHHH--hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 3578888889999999999977766532 3444444556788889999999999999874
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.24 Score=49.97 Aligned_cols=87 Identities=11% Similarity=0.211 Sum_probs=65.7
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCC
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGR 1198 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~ 1198 (2096)
.....+.+.|+|++|..+|+++++..|++.....++-.|+..+|+|+..+...+......|+....+. ....+...+|+
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-~lg~~~~~~~~ 87 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYI-RKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH-HHHHHHHHHhC
Confidence 34556778999999999999999999999888888889999999999888877766665665443333 23445667888
Q ss_pred hhhHHHhh
Q 000134 1199 WDLMDEYL 1206 (2096)
Q Consensus 1199 Wd~l~~~l 1206 (2096)
++.-.+++
T Consensus 88 ~~~A~~~~ 95 (126)
T 3upv_A 88 YASALETL 95 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87655443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=93.28 E-value=0.63 Score=57.31 Aligned_cols=116 Identities=10% Similarity=0.026 Sum_probs=93.4
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhh----------------cC--CChHHHHHHHHHHHcCCchHHHHHHHHHh
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQA----------------SG--APNVHMEKAKLLWSTRRSDGAIAELQQNL 1408 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~----------------~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i 1408 (2096)
+.+..|...|..+.+.|.++.|.....+|.. .. .+.+....|..+...|+..+|+..+++++
T Consensus 221 ~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 221 LISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4466799999999999999999998888875 21 23567788999999999999999999987
Q ss_pred hcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHH
Q 000134 1409 LNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEK 1488 (2096)
Q Consensus 1409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK 1488 (2096)
+..| ..++++..+|..+...++ .++.++.|++|.++.|....
T Consensus 301 ~~~p------------------------------------~~~~a~~~lg~~~~~~g~--~~eA~~~l~~Al~l~P~~~~ 342 (370)
T 1ihg_A 301 EIDP------------------------------------SNTKALYRRAQGWQGLKE--YDQALADLKKAQEIAPEDKA 342 (370)
T ss_dssp TTCT------------------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHH
T ss_pred HhCc------------------------------------hhHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHH
Confidence 6211 115677777777666664 78899999999999999988
Q ss_pred HHHHHHhhhHHH
Q 000134 1489 GYFYMAKYCDDV 1500 (2096)
Q Consensus 1489 ~~~~la~y~d~l 1500 (2096)
++..++..+..+
T Consensus 343 ~~~~l~~~~~~~ 354 (370)
T 1ihg_A 343 IQAELLKVKQKI 354 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888877655
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.17 E-value=0.51 Score=59.96 Aligned_cols=152 Identities=11% Similarity=-0.040 Sum_probs=112.2
Q ss_pred HHHHHHHHhchhH-HHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCCh---
Q 000134 1044 VTLARASFRCQAY-ARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLSL--- 1117 (2096)
Q Consensus 1044 ~lLA~aA~~C~ay-aRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~sl--- 1117 (2096)
..++.+...-+.| ..|+-+++..+...+. ....+..|..+|...++++........ ...++.
T Consensus 106 ~~lg~~~~~~g~~~~~A~~~~~~al~~~p~------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 173 (474)
T 4abn_A 106 MLKGKALNVTPDYSPEAEVLLSKAVKLEPE------------LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSL 173 (474)
T ss_dssp HHHHHHHTSSSSCCHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHH
Confidence 3678888889999 9999999998765321 134677899999999999988777642 222331
Q ss_pred hHHHHHhHhh---------cCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhc--------cChHHHHHHhhhhhccCh-
Q 000134 1118 QDELLSNKKS---------GNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNM--------CHLQAMVTHVDGLISRIP- 1179 (2096)
Q Consensus 1118 ~~qil~~E~~---------G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~L--------Gq~~~ll~~~~gl~~~~p- 1179 (2096)
......+... |+|++|..+|+++++..|++......+-.|+..+ |+++..+.+.+......|
T Consensus 174 ~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 253 (474)
T 4abn_A 174 QNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK 253 (474)
T ss_dssp HHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC
Confidence 1223445677 9999999999999999999998888888899888 999988887776555555
Q ss_pred --hhhhhHhHHHHHHHHhcCChhhHHHhhcc
Q 000134 1180 --QYKKTWCMQGVQAAWRLGRWDLMDEYLSG 1208 (2096)
Q Consensus 1180 --~~~~~~~~~~vEAAWrlg~Wd~l~~~l~~ 1208 (2096)
.....+ .....+.+.+|+|+.-.+++..
T Consensus 254 ~~~~~~~~-~~lg~~~~~~g~~~~A~~~~~~ 283 (474)
T 4abn_A 254 ASSNPDLH-LNRATLHKYEESYGEALEGFSQ 283 (474)
T ss_dssp GGGCHHHH-HHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccCHHHH-HHHHHHHHHcCCHHHHHHHHHH
Confidence 333322 2345677889999887666554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=93.15 E-value=2.6 Score=49.76 Aligned_cols=111 Identities=12% Similarity=0.086 Sum_probs=83.3
Q ss_pred hhHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHhh-cCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1347 EVGNCWLQYAKLCRL-------AGHY-------ETATRAILEAQA-SGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1347 ~~~~~WL~~AklARK-------ag~~-------~~A~~all~a~~-~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
.....|+..+.+... .|.+ +.|...+.+|.. +.+ +.+.+..|.++...|+..+|+..++++++
T Consensus 48 ~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 127 (308)
T 2ond_A 48 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 127 (308)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 346789999998864 4776 889999999987 443 35788999999999999999999999876
Q ss_pred cCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHH
Q 000134 1410 NKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKG 1489 (2096)
Q Consensus 1410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~ 1489 (2096)
..| .+ . ..++..+|.+....|. .++..+.|.+|++..|.....
T Consensus 128 ~~p-------------------~~--------------~--~~~~~~~~~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~ 170 (308)
T 2ond_A 128 IED-------------------ID--------------P--TLVYIQYMKFARRAEG--IKSGRMIFKKAREDARTRHHV 170 (308)
T ss_dssp SSS-------------------SC--------------T--HHHHHHHHHHHHHHHC--HHHHHHHHHHHHTSTTCCTHH
T ss_pred ccc-------------------cC--------------c--cHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCCCHHH
Confidence 211 10 0 1157777888776665 788899999999998876555
Q ss_pred HHHHH
Q 000134 1490 YFYMA 1494 (2096)
Q Consensus 1490 ~~~la 1494 (2096)
|..+|
T Consensus 171 ~~~~a 175 (308)
T 2ond_A 171 YVTAA 175 (308)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.15 E-value=1.2 Score=52.37 Aligned_cols=157 Identities=6% Similarity=-0.145 Sum_probs=98.3
Q ss_pred HHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHH----Hhc-cC------
Q 000134 1047 ARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLAR----LHK-SL------ 1115 (2096)
Q Consensus 1047 A~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~----~~~-~~------ 1115 (2096)
+..-...|.|..|+-+++.-+.-.....++.. ....+..|..+|..++++|....... +.. ..
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDE------AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34455688999999999887653321111100 11356778889999998887766532 111 11
Q ss_pred -ChhHHHHHhHhh-cCHHHHHHHHHHHHccCCCc------hhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhh---
Q 000134 1116 -SLQDELLSNKKS-GNWAEVFTSCEQALQMEPTS------VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKT--- 1184 (2096)
Q Consensus 1116 -sl~~qil~~E~~-G~W~~A~~~YE~~Lq~~p~~------~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~--- 1184 (2096)
....-...|+.. |++++|..+|+++++..|++ .....++-.++.++|+|+..+.+.+......|+....
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 122334567785 99999999999999876643 2334556677888999998888777655444332110
Q ss_pred ---HhHHHHHHHHhcCChhhHHHhhccc
Q 000134 1185 ---WCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2096)
Q Consensus 1185 ---~~~~~vEAAWrlg~Wd~l~~~l~~~ 1209 (2096)
.......+...+|+++.-.++...+
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1112234566789998777766554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=93.13 E-value=2.1 Score=50.52 Aligned_cols=115 Identities=10% Similarity=0.042 Sum_probs=87.7
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--Ch-HHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PN-VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~-~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
.....|+.++.+-.+.|.++.|.....+|....+ +. +.+..+.++...|+..+|+..++++++..|.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~---------- 166 (308)
T 2ond_A 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART---------- 166 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC----------
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC----------
Confidence 3456899999999999999999999999987753 44 7899999999999999999999998763110
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d 1498 (2096)
. +.+++..+. +........++.++.|.+|++.+|.....|..+|.++.
T Consensus 167 ---------~-----------------~~~~~~~a~-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 214 (308)
T 2ond_A 167 ---------R-----------------HHVYVTAAL-MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS 214 (308)
T ss_dssp ---------C-----------------THHHHHHHH-HHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------C-----------------HHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 0 112222211 11122356889999999999999999999999888763
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=93.11 E-value=1.1 Score=46.47 Aligned_cols=106 Identities=9% Similarity=-0.019 Sum_probs=82.8
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccc
Q 000134 1344 LGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAI 1421 (2096)
Q Consensus 1344 ~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~ 1421 (2096)
+.+.....|...|....+.|+++.|...+.++....+ +.+....+..+...|+..+|+..+++++.-.|
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------- 83 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI--------- 83 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---------
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---------
Confidence 4456678899999999999999999999999887754 56778889999999999999999999876321
Q ss_pred ccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000134 1422 SSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2096)
Q Consensus 1422 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~we 1487 (2096)
.+ ..++..+|.-+...|+ .++.++.|.+++++.|...
T Consensus 84 ----------~~-----------------~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 84 ----------NE-----------------PRFPFHAAECHLQLGD--LDGAESGFYSARALAAAQP 120 (142)
T ss_dssp ----------TC-----------------THHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHTCG
T ss_pred ----------CC-----------------cHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCc
Confidence 11 2245556666655554 7888899999999988543
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=93.09 E-value=1 Score=51.42 Aligned_cols=148 Identities=14% Similarity=0.122 Sum_probs=95.5
Q ss_pred HHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh-hh-hhhhhccC
Q 000134 152 YFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ-DT-VLSSLFLD 229 (2096)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~-~~-~~~~~~~~ 229 (2096)
|++.|.. .+.+++..+...|++++.........-....-+..|-.+|.+++..+|..++..+..+.. ++ .-..+.
T Consensus 17 ~~~~L~s-~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-- 93 (252)
T 4db8_A 17 MTQQLNS-DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-- 93 (252)
T ss_dssp HHHHHHS-SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHH--
T ss_pred HHHHHcC-CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHH--
Confidence 5666655 456789999999999888733221100111233445556699999999999999998651 10 000001
Q ss_pred cccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhccc-chhHHH-HHHHHHHhhCCCCcchHHHHHHHHHH
Q 000134 230 ENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVH-SQHFLF-LLILLVEQLDNPHVTVRMNASRLIRK 307 (2096)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~-~e~~~~-~l~~Li~~L~~~n~~v~~~A~~~i~~ 307 (2096)
+...+..+-+.+.. .|+.+++..+.+++.|....... ..+... ++=.|+..|.++++-++..|..-+.+
T Consensus 94 --------~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 164 (252)
T 4db8_A 94 --------DAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164 (252)
T ss_dssp --------HTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred --------HcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 11245566665554 67889999999999984322222 112211 34458899999999999999999999
Q ss_pred Hhhh
Q 000134 308 SCFF 311 (2096)
Q Consensus 308 l~~~ 311 (2096)
+|..
T Consensus 165 l~~~ 168 (252)
T 4db8_A 165 IASG 168 (252)
T ss_dssp HTTS
T ss_pred HHcC
Confidence 9754
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=93.03 E-value=0.56 Score=62.59 Aligned_cols=155 Identities=7% Similarity=-0.113 Sum_probs=110.5
Q ss_pred HHHHHhchhHHHHHHHHHHHHhhh---cCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----h
Q 000134 1047 ARASFRCQAYARSLMYFESHVREK---SGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----L 1117 (2096)
Q Consensus 1047 A~aA~~C~ayaRAL~ylE~~~r~~---~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l 1117 (2096)
...++.-+.|.+|+-+++..++.. ....+|. ..+.+-.+..+|..+++.|........ ...++ .
T Consensus 398 ~~~a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 470 (681)
T 2pzi_A 398 VLQATVLSQPVQTLDSLRAARHGALDADGVDFSE-------SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLV 470 (681)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTC-------CCTT-------CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HhhcccccCHHHHHHHHHHhhhhccccccccccc-------chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHH
Confidence 345588999999999999987211 0001121 124567888999999999988776542 22222 2
Q ss_pred hHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcC
Q 000134 1118 QDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197 (2096)
Q Consensus 1118 ~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg 1197 (2096)
......|...|++++|..+|+++++..|++...+.++=.|+..+|+|+. +.+.+..+...|+....+. ....+...+|
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~-~lg~~~~~~g 548 (681)
T 2pzi_A 471 WYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAF-GLARARSAEG 548 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHH-HHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHH-HHHHHHHHcC
Confidence 2345678899999999999999999999999988888899999999998 7777766666665544333 3345677899
Q ss_pred ChhhHHHhhcccC
Q 000134 1198 RWDLMDEYLSGAD 1210 (2096)
Q Consensus 1198 ~Wd~l~~~l~~~~ 1210 (2096)
+++.-.+++..+-
T Consensus 549 ~~~~A~~~~~~al 561 (681)
T 2pzi_A 549 DRVGAVRTLDEVP 561 (681)
T ss_dssp CHHHHHHHHHTSC
T ss_pred CHHHHHHHHHhhc
Confidence 9988777666543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=93.03 E-value=0.46 Score=60.14 Aligned_cols=116 Identities=12% Similarity=-0.001 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--C---------------ChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--A---------------PNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~---------------~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
..+..|...+....+.|+++.|.....+|..+. . ..+....|..+.+.|+..+|+..+++++.
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 557789999999999999999999999987753 2 25777889999999999999999999876
Q ss_pred cCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHH
Q 000134 1410 NKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKG 1489 (2096)
Q Consensus 1410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~ 1489 (2096)
..| ..++++..+|.-+...++ .++++..|++|++++|....+
T Consensus 346 ~~p------------------------------------~~~~a~~~~g~a~~~~g~--~~~A~~~~~~al~l~P~~~~a 387 (457)
T 1kt0_A 346 LDS------------------------------------ANEKGLYRRGEAQLLMNE--FESAKGDFEKVLEVNPQNKAA 387 (457)
T ss_dssp HST------------------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTC----CH
T ss_pred cCC------------------------------------ccHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHH
Confidence 211 114566667766655554 788999999999999999999
Q ss_pred HHHHHhhhHHH
Q 000134 1490 YFYMAKYCDDV 1500 (2096)
Q Consensus 1490 ~~~la~y~d~l 1500 (2096)
|..+|..+.++
T Consensus 388 ~~~l~~~~~~~ 398 (457)
T 1kt0_A 388 RLQISMCQKKA 398 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887665
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=93.02 E-value=0.53 Score=45.21 Aligned_cols=95 Identities=7% Similarity=-0.015 Sum_probs=68.2
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~ 1124 (2096)
.++....+-+.|.+|+.+++..+.... ++++...+ ....+
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~~----------------------------~~~~~~~~------------~a~~~ 50 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLDP----------------------------EESKYWLM------------KGKAL 50 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHCC----------------------------CCHHHHHH------------HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCc----------------------------CCHHHHHH------------HHHHH
Confidence 456777788888888888888665321 01111122 12345
Q ss_pred HhhcCHHHHHHHHHHHHccCCC--chhhhhhHHHHHHhc-cChHHHHHHhhhhhccCh
Q 000134 1125 KKSGNWAEVFTSCEQALQMEPT--SVQRHSDVLNCLLNM-CHLQAMVTHVDGLISRIP 1179 (2096)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~--~~~~~~glL~CL~~L-Gq~~~ll~~~~gl~~~~p 1179 (2096)
...|+|++|..+|+++++..|+ +......+-.|+..+ |+++....+.+......|
T Consensus 51 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 51 YNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 6789999999999999999998 888888888899999 999888777766555444
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=92.88 E-value=0.93 Score=53.31 Aligned_cols=151 Identities=16% Similarity=0.030 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~ 1425 (2096)
..+.++..|..+...|+++.|...+.++.... .+.+....|.++...|+..+|+..+++++...|
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p------------- 182 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ------------- 182 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC-------------
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc-------------
Confidence 35678999999999999999999999987765 456888999999999999999999987643111
Q ss_pred ccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHH
Q 000134 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDAR 1505 (2096)
Q Consensus 1426 ~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~ 1505 (2096)
...-..+..+.-+...+. .++.+..|+++++.+|....+|+.+|..|-..
T Consensus 183 -----------------------~~~~~~~~~~~~l~~~~~--~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~----- 232 (287)
T 3qou_A 183 -----------------------DTRYQGLVAQIELLXQAA--DTPEIQQLQQQVAENPEDAALATQLALQLHQV----- 232 (287)
T ss_dssp -----------------------SHHHHHHHHHHHHHHHHT--SCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-----
T ss_pred -----------------------chHHHHHHHHHHHHhhcc--cCccHHHHHHHHhcCCccHHHHHHHHHHHHHc-----
Confidence 001112222222222232 23457889999999999999999998876322
Q ss_pred hhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcch-hhhHHHHHHhhhhcC
Q 000134 1506 KRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNL-FQALPRLLTLWFDFG 1558 (2096)
Q Consensus 1506 ~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~~-~q~lpRlLtLWl~~g 1558 (2096)
| -...|+..|.+++...+.+. -+...++..++-..|
T Consensus 233 ---------g--------~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 233 ---------G--------RNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp ---------T--------CHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred ---------c--------cHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 1 12358888888888766552 233344444554444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=92.88 E-value=0.88 Score=48.62 Aligned_cols=107 Identities=8% Similarity=-0.112 Sum_probs=84.5
Q ss_pred CCCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccc
Q 000134 1343 GLGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2096)
Q Consensus 1343 ~~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~ 1420 (2096)
.++++....|...+....+.|+++.|.....+|....+ +.+....+..+...|+..+|+..+++++.-.|
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-------- 101 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-------- 101 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS--------
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC--------
Confidence 34567788999999999999999999999999988754 56778889999999999999999999876322
Q ss_pred cccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000134 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2096)
Q Consensus 1421 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~we 1487 (2096)
.+ +.++..+|.-+...|+ .++.++.|++|+++.|.-+
T Consensus 102 -----------~~-----------------~~~~~~lg~~~~~lg~--~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 102 -----------ND-----------------YTPVFHTGQCQLRLKA--PLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp -----------SC-----------------CHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCCCHH
T ss_pred -----------CC-----------------cHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCHH
Confidence 11 2245555655555554 7889999999999998643
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=92.86 E-value=1.2 Score=50.84 Aligned_cols=133 Identities=13% Similarity=0.035 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-----ChHHHHHHHHHHH--------cCCchHHHHHHHHHhhcCCc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGA-----PNVHMEKAKLLWS--------TRRSDGAIAELQQNLLNKPV 1413 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~~-----~~~~iE~AKLLW~--------~g~~~~Ai~~L~~~i~~~~~ 1413 (2096)
.....|...|.+..+.|.++.|...+.++....+ +.+....+..++. .|+..+|+..+++.++..|.
T Consensus 50 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 129 (261)
T 3qky_A 50 WAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN 129 (261)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence 3467899999999999999999999999887633 3567788999999 99999999999999875442
Q ss_pred ccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc---hHHHH
Q 000134 1414 EVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM---WEKGY 1490 (2096)
Q Consensus 1414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~---weK~~ 1490 (2096)
.. ................+..++.+|......|+ .++.+..|+++++..|. -..++
T Consensus 130 ~~-------------------~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~a~ 188 (261)
T 3qky_A 130 HE-------------------LVDDATQKIRELRAKLARKQYEAARLYERREL--YEAAAVTYEAVFDAYPDTPWADDAL 188 (261)
T ss_dssp CT-------------------THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTSTTHHHHH
T ss_pred ch-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHCCCCchHHHHH
Confidence 10 00000000001112334555777777766665 78999999999999997 56799
Q ss_pred HHHHhhhHHH
Q 000134 1491 FYMAKYCDDV 1500 (2096)
Q Consensus 1491 ~~la~y~d~l 1500 (2096)
+.+|.-|.++
T Consensus 189 ~~l~~~~~~~ 198 (261)
T 3qky_A 189 VGAMRAYIAY 198 (261)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987655
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=92.84 E-value=0.39 Score=50.95 Aligned_cols=86 Identities=13% Similarity=0.127 Sum_probs=60.2
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd 1200 (2096)
...+...|+|++|..+|+++++..|++.....++-.|+..+|+|+..+.+.+..+...|+...-+. ....+...+|+|+
T Consensus 18 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~lg~~~~~~g~~~ 96 (164)
T 3sz7_A 18 GNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS-RLGLARFDMADYK 96 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHccCHH
Confidence 445667888888888888888888888887778888888888888877777665555555433333 2345566778887
Q ss_pred hHHHhhc
Q 000134 1201 LMDEYLS 1207 (2096)
Q Consensus 1201 ~l~~~l~ 1207 (2096)
.-.+++.
T Consensus 97 ~A~~~~~ 103 (164)
T 3sz7_A 97 GAKEAYE 103 (164)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=92.84 E-value=0.86 Score=51.61 Aligned_cols=150 Identities=13% Similarity=0.133 Sum_probs=98.5
Q ss_pred HHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh-hhh-hhhhc
Q 000134 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ-DTV-LSSLF 227 (2096)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~-~~~-~~~~~ 227 (2096)
+.+.++|-++ +.+|+..+..+|..+..+.......-.....+..+-.++.+++..+|.+++..+..+.. ++- ...+
T Consensus 47 ~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~- 124 (252)
T 4hxt_A 47 EVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI- 124 (252)
T ss_dssp HHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHH-
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH-
Confidence 3466666654 58899999999999988754321111112344555666799999999999999999751 111 0000
Q ss_pred cCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHhhCCCCcchHHHHHHHH
Q 000134 228 LDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDNPHVTVRMNASRLI 305 (2096)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~~n~~v~~~A~~~i 305 (2096)
.+...+..+-+.+. ..|+.+++..+.+++.+....+...+.+. -++-.|+..|.++++.++..|..-|
T Consensus 125 ---------~~~~~i~~L~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 194 (252)
T 4hxt_A 125 ---------VDAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARAL 194 (252)
T ss_dssp ---------HHTTHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ---------HHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 11234556666444 56688999999999998542211111111 1444588899999999999999999
Q ss_pred HHHhhh
Q 000134 306 RKSCFF 311 (2096)
Q Consensus 306 ~~l~~~ 311 (2096)
.++|..
T Consensus 195 ~~l~~~ 200 (252)
T 4hxt_A 195 ANIASG 200 (252)
T ss_dssp HHHTTS
T ss_pred HHHHcC
Confidence 999763
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=92.82 E-value=1.9 Score=48.42 Aligned_cols=170 Identities=12% Similarity=-0.017 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC-----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA-----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~-----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
...|...|...-+.|.++.|...+.++....+ +.+.+..|..+...|+..+|+..+++.++..|..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~--------- 74 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH--------- 74 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---------
Confidence 35688889999999999999999999876532 2578889999999999999999999998743311
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhccchH
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT----------------GQKQKEDVITLYSRVRELQPMWE 1487 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~----------------~~~~~~~i~~~Y~~a~~l~~~we 1487 (2096)
.....++..+|.-.... .+.+.++.++.|+++++.+|+..
T Consensus 75 ------------------------~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~ 130 (225)
T 2yhc_A 75 ------------------------PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ 130 (225)
T ss_dssp ------------------------TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred ------------------------CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence 01122333343322221 12347888999999999999876
Q ss_pred HHHHH---HHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc--hhhhHHHHHHhhhhcCc
Q 000134 1488 KGYFY---MAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN--LFQALPRLLTLWFDFGS 1559 (2096)
Q Consensus 1488 K~~~~---la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~--~~q~lpRlLtLWl~~g~ 1559 (2096)
.++.. ++.....+-.........-... .-...|+..|-+.+..-++. ..+++.++-..+...|.
T Consensus 131 ~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~ 199 (225)
T 2yhc_A 131 YTTDATKRLVFLKDRLAKYEYSVAEYYTER--------GAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM 199 (225)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC
Confidence 55432 2222211110000000000000 01236888888888654443 33566677777766664
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=92.82 E-value=0.43 Score=50.39 Aligned_cols=91 Identities=14% Similarity=0.089 Sum_probs=67.4
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~ 1124 (2096)
.++...++-|.|..|+-+++.-+... | ++++...++ ...+
T Consensus 26 ~~g~~~~~~g~~~~A~~~~~~al~~~-----p-----------------------~~~~~~~~l------------g~~~ 65 (148)
T 2vgx_A 26 SLAFNQYQSGXYEDAHXVFQALCVLD-----H-----------------------YDSRFFLGL------------GACR 65 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----T-----------------------TCHHHHHHH------------HHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC-----c-----------------------ccHHHHHHH------------HHHH
Confidence 46777888899999999888866532 1 122333332 2235
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhh
Q 000134 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLI 1175 (2096)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~ 1175 (2096)
...|+|++|..+|+++++..|++......+=.|+..+|+++......+...
T Consensus 66 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 66 QAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 678999999999999999999998888888889999999988766655433
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.77 E-value=1.9 Score=49.56 Aligned_cols=27 Identities=7% Similarity=-0.042 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1383 VHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1383 ~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
+....|.++...|+..+|+..++++++
T Consensus 280 ~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 280 TLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455555556666666665555543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=92.77 E-value=0.4 Score=47.43 Aligned_cols=88 Identities=6% Similarity=0.045 Sum_probs=64.9
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhh------hhHhHHHHHHHH
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK------KTWCMQGVQAAW 1194 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~------~~~~~~~vEAAW 1194 (2096)
...+...|+|++|..+|+.+++..|++......+-.|+...|+++....+.+......|... .........+..
T Consensus 11 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 90 (131)
T 1elr_A 11 GNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF 90 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH
Confidence 44567899999999999999999999988888889999999999988877766544434321 112223346677
Q ss_pred hcCChhhHHHhhcc
Q 000134 1195 RLGRWDLMDEYLSG 1208 (2096)
Q Consensus 1195 rlg~Wd~l~~~l~~ 1208 (2096)
..|+|+.-.+++..
T Consensus 91 ~~~~~~~A~~~~~~ 104 (131)
T 1elr_A 91 KEEKYKDAIHFYNK 104 (131)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HhccHHHHHHHHHH
Confidence 88998877665543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=92.74 E-value=0.71 Score=54.37 Aligned_cols=115 Identities=14% Similarity=0.069 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh--HHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccccc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN--VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~~~~--~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~ 1425 (2096)
....|+..|.+....|+++.|...+.++....+.. ..+..+-.+-..|+...|+..+++++...|.
T Consensus 150 ~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~------------ 217 (287)
T 3qou_A 150 NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPE------------ 217 (287)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT------------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc------------
Confidence 35679999999999999999999999987654422 2333333466778888999999998763221
Q ss_pred ccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch--HHHHHHHHhhhHHH
Q 000134 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW--EKGYFYMAKYCDDV 1500 (2096)
Q Consensus 1426 ~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~w--eK~~~~la~y~d~l 1500 (2096)
-+.+++.+|..+...|+ .++.+..|.++++.+|.+ ..+|..+|..|+.+
T Consensus 218 ------------------------~~~~~~~la~~l~~~g~--~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 218 ------------------------DAALATQLALQLHQVGR--NEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp ------------------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred ------------------------cHHHHHHHHHHHHHccc--HHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 14467778888777776 899999999999999999 88999999988654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.48 E-value=0.5 Score=48.03 Aligned_cols=59 Identities=8% Similarity=-0.088 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1351 CWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
.|+..+....+.|.++.|...+.+|.... .+.+....+.++...|+..+|+..+++++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 79 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 47788888888888888888888887664 355777788888888888888888888776
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=1.5 Score=46.20 Aligned_cols=104 Identities=11% Similarity=-0.010 Sum_probs=81.6
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccc
Q 000134 1344 LGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAI 1421 (2096)
Q Consensus 1344 ~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~ 1421 (2096)
+.++....|...+....+.|+++.|...+.++.... .+.+....+..+...|+..+|+..+++++.-.|
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--------- 86 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI--------- 86 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---------
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---------
Confidence 345667789999999999999999999999987765 456777889999999999999999999876221
Q ss_pred ccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000134 1422 SSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2096)
Q Consensus 1422 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~ 1485 (2096)
.+ +.++..+|.-....|+ .++.++.|.+++++.|.
T Consensus 87 ----------~~-----------------~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 87 ----------XE-----------------PRFPFHAAECLLQXGE--LAEAESGLFLAQELIAN 121 (148)
T ss_dssp ----------TC-----------------THHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHTT
T ss_pred ----------CC-----------------chHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCcC
Confidence 11 2245566666666665 78888999999998875
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=92.41 E-value=14 Score=47.26 Aligned_cols=152 Identities=14% Similarity=0.084 Sum_probs=94.2
Q ss_pred HHHHHHhhcccCccchhhHHHHHHHHHHccCCch--hhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhh-hhh-h
Q 000134 149 LNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD--VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQD-TVL-S 224 (2096)
Q Consensus 149 ~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~--~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~-~~~-~ 224 (2096)
-+.+-++|-.....++|..+..+|..|..|.+.. ..++. --+..|-.+|.+++..||+.++.++..+..+ +-. .
T Consensus 102 ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~--GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~ 179 (510)
T 3ul1_B 102 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG--GAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 179 (510)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC--CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 4557777776667789988888999988776644 22222 1233445566999999999999999886421 110 0
Q ss_pred hhccCcccccchhhHHHHHHHHHHhhhcC----ChhHHHHHHHHHHHHHhhhcccchhH--HHHHHHHHHhhCCCCcchH
Q 000134 225 SLFLDENASSRSNELKLLDVIKLAFTAAD----DPLILETLLESTAELMMAVDVHSQHF--LFLLILLVEQLDNPHVTVR 298 (2096)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~i~eTll~~~~~i~~~~~~~~e~~--~~~l~~Li~~L~~~n~~v~ 298 (2096)
.+.. ...+..+-..+...+ ...++.++..+++.+++......+.. .-++-.|+..|.++++-++
T Consensus 180 ~v~~----------~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~ 249 (510)
T 3ul1_B 180 LVIK----------HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVL 249 (510)
T ss_dssp HHHH----------TTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHH----------cCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHH
Confidence 0011 112233334333222 23356677777777754333333322 2344458888999999999
Q ss_pred HHHHHHHHHHhhhh
Q 000134 299 MNASRLIRKSCFFH 312 (2096)
Q Consensus 299 ~~A~~~i~~l~~~~ 312 (2096)
..|..-|..++...
T Consensus 250 ~~A~~aL~~L~~~~ 263 (510)
T 3ul1_B 250 ADSCWAISYLTDGP 263 (510)
T ss_dssp HHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHhhch
Confidence 99999999997643
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=92.39 E-value=2.5 Score=48.36 Aligned_cols=137 Identities=8% Similarity=0.041 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHH----cCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWS----TRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~~~~~~iE~AKLLW~----~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
....|...+.+..+.|.++.|...+.+|...+++.+....+.++.. .|+..+|+..++++++..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------ 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------------ 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------------
Confidence 4567899999999999999999999999988888899999999999 999999999999886520
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHH
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT--GQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVL 1501 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~--~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~ 1501 (2096)
.+.++..+|...... .....++.++.|++|++.. ...+++.+|..|.+-.
T Consensus 73 --------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 --------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGK 124 (273)
T ss_dssp --------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCS
T ss_pred --------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCC
Confidence 033556666655441 1345888999999999884 5678899988774210
Q ss_pred HHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1502 VDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1502 ~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
...+ -...++..|-+++..|+..
T Consensus 125 ----------~~~~--------~~~~A~~~~~~a~~~~~~~ 147 (273)
T 1ouv_A 125 ----------VVTR--------DFKKAVEYFTKACDLNDGD 147 (273)
T ss_dssp ----------SSCC--------CHHHHHHHHHHHHHTTCHH
T ss_pred ----------Cccc--------CHHHHHHHHHHHHhcCcHH
Confidence 0011 1246888888888887543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=92.27 E-value=1.6 Score=46.06 Aligned_cols=116 Identities=9% Similarity=-0.071 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc------------------C--CChHHHHHHHHHHHcCCchHHHHHHHH
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS------------------G--APNVHMEKAKLLWSTRRSDGAIAELQQ 1406 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~------------------~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~ 1406 (2096)
..+..|...+....+.|.++.|.....+|..+ . .+.+....|..+...|+..+|+..++.
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45778999999999999999999988887765 1 124677788999999999999999999
Q ss_pred HhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch
Q 000134 1407 NLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW 1486 (2096)
Q Consensus 1407 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~w 1486 (2096)
++.-.| ..++++..+|.-....|+ .++.+..|++|++++|..
T Consensus 89 al~~~p------------------------------------~~~~a~~~~g~~~~~~g~--~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 89 VLKREE------------------------------------TNEKALFRRAKARIAAWK--LDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp HHHHST------------------------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCGGG
T ss_pred HHhcCC------------------------------------cchHHHHHHHHHHHHHhc--HHHHHHHHHHHHhcCCCC
Confidence 876211 115567777776666664 788899999999999987
Q ss_pred H-HHHHHHHhhhHHH
Q 000134 1487 E-KGYFYMAKYCDDV 1500 (2096)
Q Consensus 1487 e-K~~~~la~y~d~l 1500 (2096)
. .....++.-..++
T Consensus 131 ~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 131 ASVVAREMKIVTERR 145 (162)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 6 4455665554433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=92.25 E-value=0.31 Score=52.93 Aligned_cols=85 Identities=16% Similarity=0.251 Sum_probs=66.0
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCC-------chh-----hhhhHHHHHHhccChHHHHHHhhhhhcc-------Ch
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPT-------SVQ-----RHSDVLNCLLNMCHLQAMVTHVDGLISR-------IP 1179 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~-------~~~-----~~~glL~CL~~LGq~~~ll~~~~gl~~~-------~p 1179 (2096)
.....+.+.|+|++|..+|+++|+..|+ +.. .+.+.=.|+.++|+|+..+...+..+.. .|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 3455677899999999999999999998 443 5667778999999999988888776666 78
Q ss_pred hhhhhH----hHHHHHHHHhcCChhhHHH
Q 000134 1180 QYKKTW----CMQGVQAAWRLGRWDLMDE 1204 (2096)
Q Consensus 1180 ~~~~~~----~~~~vEAAWrlg~Wd~l~~ 1204 (2096)
++...| +..+. |--.+|+++.--+
T Consensus 96 d~~~A~~~~~~~rG~-aL~~lgr~eEAl~ 123 (159)
T 2hr2_A 96 DEGKLWISAVYSRAL-ALDGLGRGAEAMP 123 (159)
T ss_dssp THHHHHHHHHHHHHH-HHHHTTCHHHHHH
T ss_pred chHHHHHHHHHhHHH-HHHHCCCHHHHHH
Confidence 777767 54443 6667888876443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.16 E-value=0.46 Score=47.36 Aligned_cols=83 Identities=12% Similarity=0.235 Sum_probs=42.3
Q ss_pred HhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhhH
Q 000134 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLM 1202 (2096)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l 1202 (2096)
.+...|+|++|..+|+++++..|++......+-.|+...|+++..+.+.+......|.....+. ....+....|+|+.-
T Consensus 25 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~la~~~~~~~~~~~A 103 (133)
T 2lni_A 25 ECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYT-RKAAALEAMKDYTKA 103 (133)
T ss_dssp HHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHH-HHHHHHHHHhhHHHH
Confidence 3445666666666666666666665555555555666666666555554443333332222111 222344555665554
Q ss_pred HHhh
Q 000134 1203 DEYL 1206 (2096)
Q Consensus 1203 ~~~l 1206 (2096)
.+++
T Consensus 104 ~~~~ 107 (133)
T 2lni_A 104 MDVY 107 (133)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.13 E-value=1.9 Score=50.12 Aligned_cols=160 Identities=10% Similarity=0.027 Sum_probs=105.2
Q ss_pred CChhhHHHHHHHhhcccCccchhhHHHHHHHHHHccCC-chhhhhhhhHHH-HHHHHHhhcccHHHHHHHHHHHhHhhhh
Q 000134 143 SDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGT-RDVLLKTRSEWI-KCIEFLLLNKRKAIRDAFCTQIGYFLQD 220 (2096)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~-~~~~~~~~~~w~-~~~~~~~~~~~r~vR~a~~~~~~~~~~~ 220 (2096)
.+|.++-..+-+.|-..+.-.|+.+...+|..+..+.. ...--.-....+ ..++.+ .|+...||.++..++..|+++
T Consensus 56 ~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~ 134 (249)
T 2qk1_A 56 QNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRT-KEKKPSVIEAIRKALLTICKY 134 (249)
T ss_dssp CCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHH
Confidence 35666655566665455666677777888888877655 332101011112 344555 899999999999999998732
Q ss_pred hhhhhhccCccc-ccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH-----HHHHHHHHHhhCCCC
Q 000134 221 TVLSSLFLDENA-SSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF-----LFLLILLVEQLDNPH 294 (2096)
Q Consensus 221 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~-----~~~l~~Li~~L~~~n 294 (2096)
- +. .....-..++..+..++... +|++++..+..++++..+.....+-| ...+=.|...|..++
T Consensus 135 ~---------~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~ 204 (249)
T 2qk1_A 135 Y---------DPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQ 204 (249)
T ss_dssp S---------CTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSS
T ss_pred c---------cccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCC
Confidence 1 11 11112456888898877655 89999999999999866542211322 122234888889999
Q ss_pred cchHHHHHHHHHHHhhhhc
Q 000134 295 VTVRMNASRLIRKSCFFHL 313 (2096)
Q Consensus 295 ~~v~~~A~~~i~~l~~~~~ 313 (2096)
+-||..|+.-+-.+++.-.
T Consensus 205 ~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 205 PAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 9999999999999976653
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=91.98 E-value=4.2 Score=45.82 Aligned_cols=148 Identities=12% Similarity=0.124 Sum_probs=96.8
Q ss_pred HHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhh-h-hhhhhccC
Q 000134 152 YFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQD-T-VLSSLFLD 229 (2096)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~-~-~~~~~~~~ 229 (2096)
+.++|-.+. .+++..+...|..+..+.......-....-+..|-.+|.+++..+|..++..+..+..+ + .-..+.
T Consensus 7 L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-- 83 (252)
T 4hxt_A 7 LVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV-- 83 (252)
T ss_dssp HHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH--
T ss_pred HHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH--
Confidence 556665544 88999999999999988652211001122344555666999999999999999987521 1 100011
Q ss_pred cccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHH--HHHHHHHHhhCCCCcchHHHHHHHHHH
Q 000134 230 ENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFL--FLLILLVEQLDNPHVTVRMNASRLIRK 307 (2096)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~--~~l~~Li~~L~~~n~~v~~~A~~~i~~ 307 (2096)
+...+..+-+.+. ..|+.+++..+.+++.+....+...+.+. -++-.|+..|.++++-++..|..-|.+
T Consensus 84 --------~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 84 --------DAGGVEVLVKLLT-STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN 154 (252)
T ss_dssp --------HTTHHHHHHHHTT-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred --------HCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1134555666444 46788999999999998532211112111 134558899999999999999999999
Q ss_pred Hhhh
Q 000134 308 SCFF 311 (2096)
Q Consensus 308 l~~~ 311 (2096)
+|..
T Consensus 155 l~~~ 158 (252)
T 4hxt_A 155 IASG 158 (252)
T ss_dssp HTTS
T ss_pred HHcC
Confidence 9654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.96 E-value=2.5 Score=47.81 Aligned_cols=110 Identities=15% Similarity=0.030 Sum_probs=85.8
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISS 1423 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~ 1423 (2096)
......|...+.+..+.|+++.|...+.+|.... .+.+....|.+++..|+..+|+..++++++..|
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~----------- 108 (275)
T 1xnf_A 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP----------- 108 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----------
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc-----------
Confidence 4567889999999999999999999999998775 356788899999999999999999999876321
Q ss_pred ccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHH
Q 000134 1424 ITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYM 1493 (2096)
Q Consensus 1424 ~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~l 1493 (2096)
.+ +.++..+|......|+ .++.++.|++++++.|.....+...
T Consensus 109 --------~~-----------------~~~~~~la~~~~~~g~--~~~A~~~~~~a~~~~~~~~~~~~~~ 151 (275)
T 1xnf_A 109 --------TY-----------------NYAHLNRGIALYYGGR--DKLAQDDLLAFYQDDPNDPFRSLWL 151 (275)
T ss_dssp --------TC-----------------THHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred --------cc-----------------cHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhCCCChHHHHHH
Confidence 00 2345555665555554 7889999999999999876444433
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=91.96 E-value=8.9 Score=49.23 Aligned_cols=153 Identities=14% Similarity=0.086 Sum_probs=93.1
Q ss_pred HHHHHHHhhcccCccchhhHHHHHHHHHHccCCch--hhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhh-hhh-
Q 000134 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD--VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQD-TVL- 223 (2096)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~--~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~-~~~- 223 (2096)
.-+.+.++|-.....++|..+..+|..|..|.+.. ..+.. --+..|-.+|.+++..||+.++.++..+..+ +-.
T Consensus 120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~--Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r 197 (529)
T 3tpo_A 120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG--GAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFR 197 (529)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHH
Confidence 34557777776777888888888999998887644 22221 1233445577999999999999999886411 110
Q ss_pred hhhccCcccccchhhHHHHHHHHHHhhhcC----ChhHHHHHHHHHHHHHhhhcccchhH--HHHHHHHHHhhCCCCcch
Q 000134 224 SSLFLDENASSRSNELKLLDVIKLAFTAAD----DPLILETLLESTAELMMAVDVHSQHF--LFLLILLVEQLDNPHVTV 297 (2096)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~i~eTll~~~~~i~~~~~~~~e~~--~~~l~~Li~~L~~~n~~v 297 (2096)
+.+... ..+..+-..+.... ...++..+..+++.+++......+.. .-++=.|+..|.++++-+
T Consensus 198 ~~i~~~----------g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v 267 (529)
T 3tpo_A 198 DLVIKH----------GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV 267 (529)
T ss_dssp HHHHHT----------TCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHH
T ss_pred HHHHHc----------CCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHH
Confidence 000111 12223333333222 22356666677777654332222222 223445888889999999
Q ss_pred HHHHHHHHHHHhhhh
Q 000134 298 RMNASRLIRKSCFFH 312 (2096)
Q Consensus 298 ~~~A~~~i~~l~~~~ 312 (2096)
+..|..-|..++...
T Consensus 268 ~~~a~~aL~~l~~~~ 282 (529)
T 3tpo_A 268 LADSCWAISYLTDGP 282 (529)
T ss_dssp HHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999998887644
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=91.95 E-value=0.83 Score=47.52 Aligned_cols=88 Identities=11% Similarity=0.106 Sum_probs=58.6
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCCh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~W 1199 (2096)
....+...|+|++|..+|+++++..|++.....++-.|+..+|+|+..+.+.+......|.....+. ....+...+|++
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~a~~~~~~~~~ 97 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY-RRAASNMALGKF 97 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTCH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH-HHHHHHHHhccH
Confidence 3455667888888888888888888888777777778888888888777766655444444322222 223455667777
Q ss_pred hhHHHhhcc
Q 000134 1200 DLMDEYLSG 1208 (2096)
Q Consensus 1200 d~l~~~l~~ 1208 (2096)
+.-.+++..
T Consensus 98 ~~A~~~~~~ 106 (166)
T 1a17_A 98 RAALRDYET 106 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766555443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=91.88 E-value=2.1 Score=46.83 Aligned_cols=135 Identities=7% Similarity=0.005 Sum_probs=95.1
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----hh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l~ 1118 (2096)
.++....+-+.|..|+-+++..+. + ....+..+..+|..+++.+........ ...+. ..
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~-------~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 75 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQD-------P--------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYF 75 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSS-------C--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcC-------C--------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHH
Confidence 467888889999999999987531 1 124567889999999999887776542 11221 22
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCch----------------hhhhhHHHHHHhccChHHHHHHhhhhhccChhhh
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSV----------------QRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK 1182 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~----------------~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~ 1182 (2096)
.....|...|++++|..+|+.+++..|++. .....+-.|+..+|+++....+.+......|+..
T Consensus 76 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 345667889999999999999999877655 5666777888899999988887776666656543
Q ss_pred hhHhHHHHHHHH
Q 000134 1183 KTWCMQGVQAAW 1194 (2096)
Q Consensus 1183 ~~~~~~~vEAAW 1194 (2096)
......+++..+
T Consensus 156 ~~~~~~a~~~~~ 167 (213)
T 1hh8_A 156 HSKIDKAMECVW 167 (213)
T ss_dssp GGHHHHHHHHHH
T ss_pred cchHHHHHHHHH
Confidence 333333444433
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=91.85 E-value=1.6 Score=48.53 Aligned_cols=59 Identities=12% Similarity=0.012 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1351 CWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1351 ~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
.+...+.+..+.|+++.|...+.+|.... .+.+....+.++...|+..+|+..++++++
T Consensus 56 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 56 LATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34558999999999999999999998875 456888999999999999999999999986
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=91.81 E-value=1.4 Score=48.74 Aligned_cols=151 Identities=13% Similarity=0.089 Sum_probs=96.5
Q ss_pred HHHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh-hh-hhhhh
Q 000134 149 LNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ-DT-VLSSL 226 (2096)
Q Consensus 149 ~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~-~~-~~~~~ 226 (2096)
-+.+.++|. ..+.+|+..+...|..+..+.......-....-+..|-.+|.+++..+|.+++.++..+.. ++ ....+
T Consensus 14 ~~~l~~LL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 92 (210)
T 4db6_A 14 LPQMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 92 (210)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred hHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 345666665 4578999999999999987755331100111223445556699999999999999998651 11 11111
Q ss_pred ccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchh-HH-HHHHHHHHhhCCCCcchHHHHHHH
Q 000134 227 FLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQH-FL-FLLILLVEQLDNPHVTVRMNASRL 304 (2096)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~-~~-~~l~~Li~~L~~~n~~v~~~A~~~ 304 (2096)
+. ...+..+-+.+. ..|+.+++..+.+++.|........+. .. -++=.|++.|.++++-++..|..-
T Consensus 93 ~~----------~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a 161 (210)
T 4db6_A 93 ID----------AGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161 (210)
T ss_dssp HH----------TTCHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HH----------CCCHHHHHHHHc-CCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 11 113445555443 457889999999999985322111111 11 134458888999999999999999
Q ss_pred HHHHhhh
Q 000134 305 IRKSCFF 311 (2096)
Q Consensus 305 i~~l~~~ 311 (2096)
|.++|..
T Consensus 162 L~~l~~~ 168 (210)
T 4db6_A 162 LSNIASG 168 (210)
T ss_dssp HHHHHTS
T ss_pred HHHHHcC
Confidence 9999865
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=91.80 E-value=0.93 Score=51.73 Aligned_cols=150 Identities=12% Similarity=0.086 Sum_probs=98.5
Q ss_pred HHHHHhhcccCccchhhHHHHHHHHHHccCCch--hhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhc
Q 000134 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD--VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLF 227 (2096)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~--~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~ 227 (2096)
+.+.++|-++. .+|+..+...|..+..+.... ..++ ..-+..|-.+|.+++..||..++.++..+..++-..
T Consensus 57 ~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~--- 130 (252)
T 4db8_A 57 PALVQLLSSPN-EQILQEALWALSNIASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--- 130 (252)
T ss_dssp HHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH---
T ss_pred HHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchH---
Confidence 44667776654 889999999999998865533 1111 123345556679999999999999999975211100
Q ss_pred cCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH--HHHHHHHHHhhCCCCcchHHHHHHHH
Q 000134 228 LDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF--LFLLILLVEQLDNPHVTVRMNASRLI 305 (2096)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~--~~~l~~Li~~L~~~n~~v~~~A~~~i 305 (2096)
-..-.....+..+-+.+. ..|+.+++..+.+++.+....+...+.+ .-++-.|++.|.++++.++..|..-|
T Consensus 131 -----~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 204 (252)
T 4db8_A 131 -----IQAVIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 204 (252)
T ss_dssp -----HHHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred -----HHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 000111235566666554 4588899999999999854221111111 11244588999999999999999999
Q ss_pred HHHhhh
Q 000134 306 RKSCFF 311 (2096)
Q Consensus 306 ~~l~~~ 311 (2096)
.++|..
T Consensus 205 ~~l~~~ 210 (252)
T 4db8_A 205 SNIASG 210 (252)
T ss_dssp HHHTTS
T ss_pred HHHhcC
Confidence 999753
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=91.80 E-value=2.2 Score=47.81 Aligned_cols=156 Identities=11% Similarity=0.035 Sum_probs=106.8
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCChh----
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLSLQ---- 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~sl~---- 1118 (2096)
.+|...++-|.|.+|+-++|..+...+.+ + ...+.+-.|..+|-..++.+........ ...|+-.
T Consensus 9 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~--~-------~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~ 79 (225)
T 2yhc_A 9 ATAQQKLQDGNWRQAITQLEALDNRYPFG--P-------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 79 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTS--T-------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC--h-------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHH
Confidence 35778888999999999999987753211 1 1123456788999999999977776542 2222211
Q ss_pred ---HHHHHhH------------------hhcCHHHHHHHHHHHHccCCCchhhh-----------------hhHHHHHHh
Q 000134 1119 ---DELLSNK------------------KSGNWAEVFTSCEQALQMEPTSVQRH-----------------SDVLNCLLN 1160 (2096)
Q Consensus 1119 ---~qil~~E------------------~~G~W~~A~~~YE~~Lq~~p~~~~~~-----------------~glL~CL~~ 1160 (2096)
.....+. ..|++++|...|+.+++..|++.... ..+-.++.+
T Consensus 80 a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~ 159 (225)
T 2yhc_A 80 VMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE 159 (225)
T ss_dssp HHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222 36899999999999999999875332 234456778
Q ss_pred ccChHHHHHHhhhhhccChhhh--hhHhHHHHHHHHhcCChhhHHHhhccc
Q 000134 1161 MCHLQAMVTHVDGLISRIPQYK--KTWCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2096)
Q Consensus 1161 LGq~~~ll~~~~gl~~~~p~~~--~~~~~~~vEAAWrlg~Wd~l~~~l~~~ 1209 (2096)
.|+++..+...+.+....|+.. .+......++-..+|+++.-.+++...
T Consensus 160 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 160 RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 8999999888888777766532 223334567888899998877766543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=91.69 E-value=0.46 Score=49.34 Aligned_cols=85 Identities=7% Similarity=0.043 Sum_probs=59.9
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd 1200 (2096)
...+...|+|++|..+|+.+++..|++.....++=.|+..+|+++..+...+......|+....+. ....+...+|+++
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~lg~~~~~~g~~~ 103 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF-HAAECHLQLGDLD 103 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH-HHHHHHHHTTCHH
T ss_pred HHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH-HHHHHHHHcCCHH
Confidence 445667888888888888888888888888878888888888888877776665554454332222 3345667788887
Q ss_pred hHHHhh
Q 000134 1201 LMDEYL 1206 (2096)
Q Consensus 1201 ~l~~~l 1206 (2096)
.-.+++
T Consensus 104 ~A~~~~ 109 (142)
T 2xcb_A 104 GAESGF 109 (142)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=91.58 E-value=0.53 Score=47.69 Aligned_cols=85 Identities=13% Similarity=0.027 Sum_probs=59.9
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd 1200 (2096)
...+...|+|++|..+|+.+++..|++.....++-.|+..+|+|+..+.+.+......|+...-+. ....+...+|+|+
T Consensus 16 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-~l~~~~~~~~~~~ 94 (137)
T 3q49_B 16 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF-FLGQCQLEMESYD 94 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHTTCHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHH-HHHHHHHHHhhHH
Confidence 345667888888888888888888888888888888888888888877776665555554333332 2334566778887
Q ss_pred hHHHhh
Q 000134 1201 LMDEYL 1206 (2096)
Q Consensus 1201 ~l~~~l 1206 (2096)
.-.+++
T Consensus 95 ~A~~~~ 100 (137)
T 3q49_B 95 EAIANL 100 (137)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=91.55 E-value=0.56 Score=61.86 Aligned_cols=247 Identities=13% Similarity=0.068 Sum_probs=151.3
Q ss_pred hcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccccccccc
Q 000134 12 ALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKNACKLLL 91 (2096)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (2096)
.|+|.++.||..|+-+|--|. ++.+...+...+....++.+.-|||.-+.++|-+.-.+... +.+....-+++..
T Consensus 115 DL~~~n~~vr~lAL~~L~~i~---~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~--v~~~~~~l~~lL~ 189 (618)
T 1w63_A 115 DLNHSTQFVQGLALCTLGCMG---SSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPEL--MEMFLPATKNLLN 189 (618)
T ss_dssp HHSCSSSHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGG--GGGGGGGTTTSTT
T ss_pred hcCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHH--HHHHHHHHHHHhC
Confidence 567999999999999988776 67888888888888888999999999999998887654311 1111111122222
Q ss_pred ccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcc-------------
Q 000134 92 NVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYD------------- 158 (2096)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------------- 158 (2096)
| .| +.-+..++.-+ |.+|... .+....|..+-+.++++|.+
T Consensus 190 D-~d---~~V~~~Al~~L-~~i~~~~---------------------~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~ 243 (618)
T 1w63_A 190 E-KN---HGVLHTSVVLL-TEMCERS---------------------PDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVS 243 (618)
T ss_dssp C-CC---HHHHHHHHHHH-HHHCCSH---------------------HHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSS
T ss_pred C-CC---HhHHHHHHHHH-HHHHHhC---------------------hHHHHHHHHHHHHHHHHHHHHHcCCCCcccccc
Confidence 2 11 11111111000 1112111 00011233344445555543
Q ss_pred -cCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHh------hcccHHHHHHHHHHHhHhhhhhhhhhhccCcc
Q 000134 159 -ESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLL------LNKRKAIRDAFCTQIGYFLQDTVLSSLFLDEN 231 (2096)
Q Consensus 159 -~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~------~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~ 231 (2096)
-+++-.|+.+++.|+.+..+.... ......+|..++ .|.+.+|...+++++-.+-
T Consensus 244 ~~~~~~~q~~il~~L~~l~~~~~~~-----~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~------------- 305 (618)
T 1w63_A 244 GISDPFLQVRILRLLRILGRNDDDS-----SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIK------------- 305 (618)
T ss_dssp SSSCHHHHHHHHHHHHHHTTTCHHH-----HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSC-------------
T ss_pred CCCCChHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcC-------------
Confidence 246777888889888887763311 122334555553 3567789988888776521
Q ss_pred cccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhh
Q 000134 232 ASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFF 311 (2096)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~ 311 (2096)
+...-...+...+.. |...+|+.++...|.+++.|+.. +.+.+.-..-.++..|.+++..||..|...+..+|..
T Consensus 306 -~~~~l~~~a~~~L~~-~L~~~d~~vr~~aL~~L~~i~~~---~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~ 380 (618)
T 1w63_A 306 -SESGLRVLAINILGR-FLLNNDKNIRYVALTSLLKTVQT---DHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNG 380 (618)
T ss_dssp -CCHHHHHHHHHHHHH-HHTCSSTTTHHHHHHHHHHHHHH---HHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCS
T ss_pred -CCHHHHHHHHHHHHH-HHhCCCCchHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccc
Confidence 111112345556665 34457889999999999999543 3444444455788889999999999999999999654
Q ss_pred h
Q 000134 312 H 312 (2096)
Q Consensus 312 ~ 312 (2096)
.
T Consensus 381 ~ 381 (618)
T 1w63_A 381 N 381 (618)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=91.53 E-value=0.55 Score=46.98 Aligned_cols=89 Identities=13% Similarity=0.115 Sum_probs=62.9
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCch---hhhhhHHHHHHhccChHHHHHHhhhhhccChhhh--hhHhHHHHHHH
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSV---QRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK--KTWCMQGVQAA 1193 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~---~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~--~~~~~~~vEAA 1193 (2096)
.....+...|+|++|...|+.+++..|++. .....+-.|+...|+++....+.+......|+.. .........+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 345567788999999999999999888876 5666777888899999988887776665555431 11122334566
Q ss_pred HhcCChhhHHHhhc
Q 000134 1194 WRLGRWDLMDEYLS 1207 (2096)
Q Consensus 1194 Wrlg~Wd~l~~~l~ 1207 (2096)
..+|+|+.-.+++.
T Consensus 87 ~~~g~~~~A~~~~~ 100 (129)
T 2xev_A 87 YGEGKNTEAQQTLQ 100 (129)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 77888877655543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=91.46 E-value=0.45 Score=48.78 Aligned_cols=59 Identities=7% Similarity=0.134 Sum_probs=49.9
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccCh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p 1179 (2096)
...+.+.|+|++|..+|+++++..|++.....++=.|+..+|+|+..+...+..+...|
T Consensus 15 G~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~ 73 (127)
T 4gcn_A 15 GNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR 73 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc
Confidence 34577899999999999999999999999988888999999999988877765444334
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=91.31 E-value=1.1 Score=48.23 Aligned_cols=46 Identities=7% Similarity=-0.065 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch--HHHHHHHHhhhH
Q 000134 1451 AKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW--EKGYFYMAKYCD 1498 (2096)
Q Consensus 1451 Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~w--eK~~~~la~y~d 1498 (2096)
+.+++.+|..+...|+ .++.+..|.++++.+|.+ ..+|+.+|..+.
T Consensus 108 ~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~ 155 (176)
T 2r5s_A 108 FELACELAVQYNQVGR--DEEALELLWNILKVNLGAQDGEVKKTFMDILS 155 (176)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccc--HHHHHHHHHHHHHhCcccChHHHHHHHHHHHH
Confidence 3456666666665554 677777777777777766 346777765553
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=91.19 E-value=1.4 Score=47.81 Aligned_cols=108 Identities=18% Similarity=0.103 Sum_probs=82.8
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC-------h-------HHHHHHHHHHHcCCchHHHHHHHHHhhcCC
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP-------N-------VHMEKAKLLWSTRRSDGAIAELQQNLLNKP 1412 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~-------~-------~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~ 1412 (2096)
..+..|+..+....+.|+++.|..+-.+|..+.+. . +....+-.+.+.|+..+|+...+++|.-++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 34678999999999999999999999998877544 1 777888999999999999999999876200
Q ss_pred cccccccccccccccCCCCCCCCCcccccccchhchhHHHHH----HHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000134 1413 VEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTL----LLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2096)
Q Consensus 1413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~----LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~ 1485 (2096)
...+.++..++++ .-+|.-+...|+ .++.+..|++|+++.|.
T Consensus 89 -----------------------------~~~e~~pd~~~A~~~~~~~rG~aL~~lgr--~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 89 -----------------------------RRGELNQDEGKLWISAVYSRALALDGLGR--GAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp -----------------------------HHCCTTSTHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHH
T ss_pred -----------------------------ccccCCCchHHHHHHHHHhHHHHHHHCCC--HHHHHHHHHHHHhcCCC
Confidence 0001122335666 777777776665 88999999999999874
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=91.08 E-value=0.88 Score=50.43 Aligned_cols=147 Identities=11% Similarity=0.109 Sum_probs=97.6
Q ss_pred HHHHHhhcccCccchhhHHHHHHHHHHccCCch--hhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhh--hhhh
Q 000134 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD--VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDT--VLSS 225 (2096)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~--~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~--~~~~ 225 (2096)
+.+.++|.++ +.+|+-.++.+|..+..+.... ..++ ..-+..|-.+|.+++..+|..++.++..+..+. ....
T Consensus 57 ~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 133 (210)
T 4db6_A 57 PALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133 (210)
T ss_dssp HHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcHHHHHHHH--CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4466777665 7789999999999998765432 1111 123345555669999999999999999975110 0000
Q ss_pred hccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH-H-HHHHHHHHhhCCCCcchHHHHHH
Q 000134 226 LFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF-L-FLLILLVEQLDNPHVTVRMNASR 303 (2096)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~-~-~~l~~Li~~L~~~n~~v~~~A~~ 303 (2096)
+. ....+..+-+.+.. .|+.+++..+.+++.++.......+.+ . -++=.|+..|.++++-++..|..
T Consensus 134 ~~----------~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~ 202 (210)
T 4db6_A 134 VI----------DAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQE 202 (210)
T ss_dssp HH----------HTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HH----------HcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 11 12356666665544 588899999999999854311122221 1 13445888899999999999999
Q ss_pred HHHHHhh
Q 000134 304 LIRKSCF 310 (2096)
Q Consensus 304 ~i~~l~~ 310 (2096)
-|.++|.
T Consensus 203 aL~~l~~ 209 (210)
T 4db6_A 203 ALEKLQS 209 (210)
T ss_dssp HHHHHCC
T ss_pred HHHHHhc
Confidence 9988864
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=91.05 E-value=5.1 Score=45.77 Aligned_cols=135 Identities=11% Similarity=0.049 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHH----cCChHHHHHHHHHHhhcCCChHHHHHHHHHHH----cCCchHHHHHHHHHhhcCCcccccccc
Q 000134 1349 GNCWLQYAKLCRL----AGHYETATRAILEAQASGAPNVHMEKAKLLWS----TRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2096)
Q Consensus 1349 ~~~WL~~AklARK----ag~~~~A~~all~a~~~~~~~~~iE~AKLLW~----~g~~~~Ai~~L~~~i~~~~~~~~~~~~ 1420 (2096)
...|...+.+... .|.++.|...+.+|...+.+.+....+.++.. .|+..+|+..++++++..+
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~-------- 145 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLND-------- 145 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCc--------
Confidence 4567778888888 88999999888888888888888888888888 8889999998888765210
Q ss_pred cccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000134 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTG--QKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2096)
Q Consensus 1421 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~--~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d 1498 (2096)
+.++..+|....... ..+.++.++.|++|++..+ ..+++.+|..|.
T Consensus 146 ------------------------------~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~~~ 193 (273)
T 1ouv_A 146 ------------------------------GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD--SPGCFNAGNMYH 193 (273)
T ss_dssp ------------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHH
Confidence 224455555554411 4457788888888887743 467777777663
Q ss_pred HHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCc
Q 000134 1499 DVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHK 1541 (2096)
Q Consensus 1499 ~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~ 1541 (2096)
.-. ...+ -...++..|-+++..|+.
T Consensus 194 ~g~----------~~~~--------~~~~A~~~~~~a~~~~~~ 218 (273)
T 1ouv_A 194 HGE----------GATK--------NFKEALARYSKACELENG 218 (273)
T ss_dssp HTC----------SSCC--------CHHHHHHHHHHHHHTTCH
T ss_pred cCC----------CCCc--------cHHHHHHHHHHHHhCCCH
Confidence 210 0000 123577777777777664
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=90.95 E-value=0.7 Score=44.32 Aligned_cols=89 Identities=19% Similarity=0.165 Sum_probs=68.4
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChh--hhhhHhHHHHHHHHhc-
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ--YKKTWCMQGVQAAWRL- 1196 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~--~~~~~~~~~vEAAWrl- 1196 (2096)
....+...|+|++|..+|+++++..|++.....++-.|+..+|+++......+......|. ...- ......+.-.+
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-~~~l~~~~~~~~ 90 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDV-WAAKADALRYIE 90 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHH-HHHHHHHHTTCS
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHH-HHHHHHHHHHHh
Confidence 4556778999999999999999999999888888889999999999888877766555554 3222 22344566778
Q ss_pred CChhhHHHhhccc
Q 000134 1197 GRWDLMDEYLSGA 1209 (2096)
Q Consensus 1197 g~Wd~l~~~l~~~ 1209 (2096)
|+|+.-.+++...
T Consensus 91 ~~~~~A~~~~~~~ 103 (112)
T 2kck_A 91 GKEVEAEIAEARA 103 (112)
T ss_dssp SCSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9998877776554
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=90.75 E-value=2.9 Score=48.68 Aligned_cols=56 Identities=14% Similarity=0.048 Sum_probs=36.8
Q ss_pred HHHhhhcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhh
Q 000134 7 EILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFL 69 (2096)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (2096)
+.+--.|.|+...||..|+..+--+- ++. ....|..+.++....|+......||.+
T Consensus 26 ~~L~~~L~~~~~~vr~~A~~~L~~~~---~~~----~~~~L~~~l~d~~~~vR~~A~~aL~~l 81 (280)
T 1oyz_A 26 DELFRLLDDHNSLKRISSARVLQLRG---GQD----AVRLAIEFCSDKNYIRRDIGAFILGQI 81 (280)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHC---CHH----HHHHHHHHHTCSSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHccC---Cch----HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 33445678888999999887765442 443 444444455566677888877777765
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.66 E-value=0.69 Score=47.07 Aligned_cols=85 Identities=22% Similarity=0.198 Sum_probs=52.0
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCc---hhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcC
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTS---VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLG 1197 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~---~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg 1197 (2096)
...+...|+|++|..+|+.+++..|++ ......+-.|+..+|+|+..+...+......|+...-+. ....+....|
T Consensus 35 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~a~~~~~~~ 113 (148)
T 2dba_A 35 GNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY-RRSQALEKLG 113 (148)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH-HHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH-HHHHHHHHcC
Confidence 344567777888888888777777776 555666677777777777766666554444443322222 2334556677
Q ss_pred ChhhHHHhh
Q 000134 1198 RWDLMDEYL 1206 (2096)
Q Consensus 1198 ~Wd~l~~~l 1206 (2096)
+|+.-.+++
T Consensus 114 ~~~~A~~~~ 122 (148)
T 2dba_A 114 RLDQAVLDL 122 (148)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 776654443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=90.53 E-value=57 Score=43.32 Aligned_cols=132 Identities=9% Similarity=0.055 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHH-HHHHHHhhcCCC--hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETAT-RAILEAQASGAP--NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~-~all~a~~~~~~--~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
..+.|+.+|++....|..+.|. ..+.+|....+. .+.+.+|++.+..|+..+|-.+++++++..+..... +
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~------~ 415 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAA------L 415 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH------H
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh------h
Confidence 4679999999999999998886 777778765543 357899999999999999999999988632110000 0
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-ccchHHHHHHHHh
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVREL-QPMWEKGYFYMAK 1495 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l-~~~weK~~~~la~ 1495 (2096)
.. -.|.+ ..+........+++++.+++.....+. .+.+.+.|.+|.+. .+.-.+.|..+|.
T Consensus 416 ~~--~~p~~------~~~~~~~~~~~~~vWi~y~~~erR~~~--l~~AR~vf~~A~~~~~~~~~~lyi~~A~ 477 (679)
T 4e6h_A 416 ME--DDPTN------ESAINQLKSKLTYVYCVYMNTMKRIQG--LAASRKIFGKCRRLKKLVTPDIYLENAY 477 (679)
T ss_dssp HH--HSTTC------HHHHHHHHHHHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHTGGGSCTHHHHHHHH
T ss_pred hh--ccCcc------hhhhhhhccchHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 00 00000 001111122456788888888776654 68888999999887 3222244544443
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=90.47 E-value=74 Score=44.50 Aligned_cols=138 Identities=13% Similarity=0.044 Sum_probs=81.8
Q ss_pred HHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhh--cccHHHHHHHHHHHhHhhhhhhhhhhccCccccc---chhhHHH
Q 000134 167 SCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLL--NKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASS---RSNELKL 241 (2096)
Q Consensus 167 ~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~--~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 241 (2096)
.++.+++..|...+.--..++...+.+-+..-+. ..+-..++|.|=.++++- | .... ++.--.+
T Consensus 454 ~ly~~mrd~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIa----------g-~~~~~~E~~~Lp~v 522 (1073)
T 3gjx_A 454 NLYKNMRETLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSIS----------G-AMHEEDEKRFLVTV 522 (1073)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTT----------T-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHH----------C-cCCcccccchHHHH
Confidence 4566666665442210001223334443333322 234778889888888832 1 1111 1111223
Q ss_pred HHHHHHHhhhcC--C--hhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhccc
Q 000134 242 LDVIKLAFTAAD--D--PLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKG 315 (2096)
Q Consensus 242 ~~~~~~~~~~~~--d--~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~ 315 (2096)
+..+-......+ | +-+.=+.+.++|+-.+=...+.+.+.-++-.|++.+..+|+-|...|..-+.++|..+.+.
T Consensus 523 i~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~ 600 (1073)
T 3gjx_A 523 IKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH 600 (1073)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333332 2 2355556668888655555688999999999999999999999999988888888888764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=90.43 E-value=4.4 Score=45.56 Aligned_cols=82 Identities=9% Similarity=0.018 Sum_probs=41.3
Q ss_pred hhcCHHHHHHHHHHHHcc--------CCCchhhhhhHHHHHHhccChHHHHHHhhhhhcc--------ChhhhhhHhHHH
Q 000134 1126 KSGNWAEVFTSCEQALQM--------EPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISR--------IPQYKKTWCMQG 1189 (2096)
Q Consensus 1126 ~~G~W~~A~~~YE~~Lq~--------~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~--------~p~~~~~~~~~~ 1189 (2096)
..|+|++|..+|+++++. .|........+-.|+...|+++....+.+..... .|.... .....
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-~~~~l 91 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAA-TLNNL 91 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH-HHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHH-HHHHH
Confidence 456666666666666542 1333444455566666777776655554433221 121111 11222
Q ss_pred HHHHHhcCChhhHHHhhcc
Q 000134 1190 VQAAWRLGRWDLMDEYLSG 1208 (2096)
Q Consensus 1190 vEAAWrlg~Wd~l~~~l~~ 1208 (2096)
..+.+..|+|+.-.+++..
T Consensus 92 ~~~~~~~g~~~~A~~~~~~ 110 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKR 110 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHH
Confidence 3456667777666555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.28 E-value=0.67 Score=44.85 Aligned_cols=62 Identities=13% Similarity=0.095 Sum_probs=52.2
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQY 1181 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~ 1181 (2096)
....+...|+|++|..+|+++++..|++.....++=.|+..+|+|+..+...+..+...|+.
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 10 QGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 34557789999999999999999999999888888999999999998888777666555543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=90.25 E-value=2.7 Score=40.71 Aligned_cols=25 Identities=16% Similarity=0.441 Sum_probs=20.6
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVRE 1069 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~ 1069 (2096)
.++....+.+.|..|+-+++..+..
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~ 38 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALEL 38 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5677888899999999999987654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=90.00 E-value=3 Score=46.92 Aligned_cols=124 Identities=19% Similarity=0.102 Sum_probs=93.3
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc------CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQAS------GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEV 1415 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~------~~----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~ 1415 (2096)
...+..|...|.+....|+++.|...+.+|... +. +.+....|.+++..|+..+|+..+++++.....
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-- 117 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK-- 117 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH--
Confidence 356778999999999999999999998887655 22 235677899999999999999999998762100
Q ss_pred ccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------ccchH
Q 000134 1416 VGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVREL--------QPMWE 1487 (2096)
Q Consensus 1416 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l--------~~~we 1487 (2096)
......+..+.++..+|......|+ .++....|.++++. .+...
T Consensus 118 --------------------------~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 118 --------------------------VLGKFHPDVAKQLNNLALLCQNQGK--AEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp --------------------------HHCTTCHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred --------------------------HcCCCChHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 0001123456777888877665554 78899999999998 77777
Q ss_pred HHHHHHHhhhHH
Q 000134 1488 KGYFYMAKYCDD 1499 (2096)
Q Consensus 1488 K~~~~la~y~d~ 1499 (2096)
.+++.+|..|.+
T Consensus 170 ~~~~~la~~~~~ 181 (283)
T 3edt_B 170 KTKNNLASCYLK 181 (283)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 788888887743
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=89.93 E-value=1.8 Score=55.86 Aligned_cols=123 Identities=14% Similarity=0.051 Sum_probs=90.4
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC----hh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS----LQ 1118 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s----l~ 1118 (2096)
.++....+-+.|..|+-+++..+... |. ....+..|..+|..+++.|........ ...++ ..
T Consensus 28 ~lg~~~~~~g~~~~A~~~~~~al~~~-----p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 95 (568)
T 2vsy_A 28 MLADAELGMGDTTAGEMAVQRGLALH-----PG-------HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIAL 95 (568)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTTS-----TT-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-----CC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 57788888899999999999987642 11 124567888899999998887776542 11222 22
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhc---cChHHHHHHhhhhhccCh
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNM---CHLQAMVTHVDGLISRIP 1179 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~L---Gq~~~ll~~~~gl~~~~p 1179 (2096)
.....|...|++++|..+|+++++..|++......+-.|+..+ |+++....+.+..+...|
T Consensus 96 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 96 WLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 3445678899999999999999999998888888888888888 888877666655444333
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=89.89 E-value=0.54 Score=49.75 Aligned_cols=88 Identities=15% Similarity=0.164 Sum_probs=62.9
Q ss_pred hHHHHHhHhhcCHHHHHHHHHHHHcc------------------CCCchhhhhhHHHHHHhccChHHHHHHhhhhhccCh
Q 000134 1118 QDELLSNKKSGNWAEVFTSCEQALQM------------------EPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2096)
Q Consensus 1118 ~~qil~~E~~G~W~~A~~~YE~~Lq~------------------~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p 1179 (2096)
.+....+-+.|+|++|..+|+.+++. .|.+...+.++-.|+..+|+|+..+.+.+..+...|
T Consensus 15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p 94 (162)
T 3rkv_A 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREE 94 (162)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC
Confidence 34556677889999999999999887 555556677788899999999988888776666666
Q ss_pred hhhhhHhHHHHHHHHhcCChhhHHHhh
Q 000134 1180 QYKKTWCMQGVQAAWRLGRWDLMDEYL 1206 (2096)
Q Consensus 1180 ~~~~~~~~~~vEAAWrlg~Wd~l~~~l 1206 (2096)
.....+.. ...+--.+|+|+.-.+++
T Consensus 95 ~~~~a~~~-~g~~~~~~g~~~~A~~~~ 120 (162)
T 3rkv_A 95 TNEKALFR-RAKARIAAWKLDEAEEDL 120 (162)
T ss_dssp TCHHHHHH-HHHHHHHTTCHHHHHHHH
T ss_pred cchHHHHH-HHHHHHHHhcHHHHHHHH
Confidence 55444333 334566788887655543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.83 E-value=8.3 Score=45.06 Aligned_cols=140 Identities=18% Similarity=0.100 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCC----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQAS----GAP----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGST 1419 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~----~~~----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~ 1419 (2096)
...++-+.+.+.+..|.++.|..+..+|..+ +++ .+...-+.++...|+..+|+..+++++.-.+.
T Consensus 36 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~------ 109 (292)
T 1qqe_A 36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTH------ 109 (292)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH------
Confidence 3445666678889999999999998887654 333 35678889999999999999999998762100
Q ss_pred ccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccch------HHHHHH
Q 000134 1420 AISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT-GQKQKEDVITLYSRVRELQPMW------EKGYFY 1492 (2096)
Q Consensus 1420 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~-~~~~~~~i~~~Y~~a~~l~~~w------eK~~~~ 1492 (2096)
.......+.++..+|.-.... |+ .++.+..|++|+++.|.- ..+|..
T Consensus 110 ------------------------~g~~~~~a~~~~~lg~~~~~~lg~--~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 163 (292)
T 1qqe_A 110 ------------------------RGQFRRGANFKFELGEILENDLHD--YAKAIDCYELAGEWYAQDQSVALSNKCFIK 163 (292)
T ss_dssp ------------------------TTCHHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------------cCCHHHHHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 001123466777788776664 64 889999999999998753 245666
Q ss_pred HHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCc
Q 000134 1493 MAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHK 1541 (2096)
Q Consensus 1493 la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~ 1541 (2096)
+|..|-+. |. ...|+..|-+++...++
T Consensus 164 lg~~~~~~--------------g~--------~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 164 CADLKALD--------------GQ--------YIEASDIYSKLIKSSMG 190 (292)
T ss_dssp HHHHHHHT--------------TC--------HHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHh--------------CC--------HHHHHHHHHHHHHHHhc
Confidence 66655321 11 23688888888876544
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=89.79 E-value=2.1 Score=45.90 Aligned_cols=146 Identities=8% Similarity=-0.042 Sum_probs=100.1
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHh--ccCChhHH-H
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLH--KSLSLQDE-L 1121 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~--~~~sl~~q-i 1121 (2096)
.++....+-|.|..|+-+++.-+...++ ....+-.|..+|...+++|........- ..++..-. .
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~------------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~ 78 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQS------------RGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSL 78 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHT------------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC------------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHH
Confidence 4677788899999999999987654332 1245678999999999999888876531 11211110 0
Q ss_pred ---HHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhh-hHhHHHHHHHHhcC
Q 000134 1122 ---LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKK-TWCMQGVQAAWRLG 1197 (2096)
Q Consensus 1122 ---l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~-~~~~~~vEAAWrlg 1197 (2096)
+.....+...+|..+|+++++..|++...+..+-.|+...|+++....+.+..+...|++.. .....-.++...+|
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 79 IAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhC
Confidence 11112223345899999999999999999999999999999999998888877777775422 11112234555677
Q ss_pred ChhhH
Q 000134 1198 RWDLM 1202 (2096)
Q Consensus 1198 ~Wd~l 1202 (2096)
+++.-
T Consensus 159 ~~~~A 163 (176)
T 2r5s_A 159 QGNAI 163 (176)
T ss_dssp SSCHH
T ss_pred CCCcH
Confidence 77643
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.67 E-value=3.3 Score=44.04 Aligned_cols=103 Identities=13% Similarity=0.137 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHH-HHHcCCc--hHHHHHHHHHhhcCCcccccccccc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKL-LWSTRRS--DGAIAELQQNLLNKPVEVVGSTAIS 1422 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKL-LW~~g~~--~~Ai~~L~~~i~~~~~~~~~~~~~~ 1422 (2096)
....|...|.+....|.++.|..++.++.... .+.+....|.+ +...|+. .+|+..+++++...|.
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~--------- 113 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSN--------- 113 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT---------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC---------
Confidence 35789999999999999999999999987764 45677888998 6788988 9999999998763210
Q ss_pred cccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHH
Q 000134 1423 SITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEK 1488 (2096)
Q Consensus 1423 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK 1488 (2096)
...++..+|......|+ .++.+..|.++++..|....
T Consensus 114 ---------------------------~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 114 ---------------------------EITALMLLASDAFMQAN--YAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTCCTTSC
T ss_pred ---------------------------cHHHHHHHHHHHHHccc--HHHHHHHHHHHHhhCCCCcc
Confidence 02355666666665554 78888999999999987543
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=89.46 E-value=55 Score=42.99 Aligned_cols=161 Identities=14% Similarity=0.130 Sum_probs=101.5
Q ss_pred HHHHHHHhhc-ccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhh-----
Q 000134 148 LLNIYFEFLY-DESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDT----- 221 (2096)
Q Consensus 148 ~~~~~~~~l~-~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~----- 221 (2096)
+-+-+.++|. ..++.-|+-..+-++.++.++...-+ .. ..|.+.+..+|.|++..|+.++...+..+.++.
T Consensus 147 l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~--~~-~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~ 223 (621)
T 2vgl_A 147 FAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV--PM-GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFK 223 (621)
T ss_dssp HTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC--CC-CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc--Cc-hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHH
Confidence 3344555553 46777899889999999999765322 21 469999999999999999999998887775322
Q ss_pred -----h---hhhhccCcccc----------cchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhh------------
Q 000134 222 -----V---LSSLFLDENAS----------SRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMA------------ 271 (2096)
Q Consensus 222 -----~---~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~------------ 271 (2096)
+ |..+..+++-+ +-+- +..+.++-..+...+||...+.+...+.+|+..
T Consensus 224 ~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~-qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~ 302 (621)
T 2vgl_A 224 TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWL-SVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQH 302 (621)
T ss_dssp THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHH-HHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchH-HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccc
Confidence 1 11111111110 1111 222233333354455666666555544444321
Q ss_pred -----------------hcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhh
Q 000134 272 -----------------VDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2096)
Q Consensus 272 -----------------~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~ 312 (2096)
.+...++...+.-.|..+|.++++-+|-+|.+-|..++..+
T Consensus 303 ~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~ 360 (621)
T 2vgl_A 303 SNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSE 360 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCT
T ss_pred cchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcc
Confidence 12245666677777888898899999999999999998765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=89.22 E-value=2.3 Score=51.25 Aligned_cols=123 Identities=11% Similarity=0.037 Sum_probs=80.6
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccC---CCCChhhHHHHHHHHhcCCChHHHHHHHHH--hccCC---
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKS---GTFEDEDVSFLMEIYSFLDEPDGLSGLARL--HKSLS--- 1116 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~---~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~--~~~~s--- 1116 (2096)
.++...++-+.|..|+.+++..+.............. .......+..|..+|..+++++...-.... ...++
T Consensus 152 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~ 231 (336)
T 1p5q_A 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK 231 (336)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 5788889999999999999998875432100000000 000013456777888888888876666432 11221
Q ss_pred -hhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHH
Q 000134 1117 -LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAM 1167 (2096)
Q Consensus 1117 -l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~l 1167 (2096)
.......|...|++++|..+|+++++..|++......+-.|+..+|+++..
T Consensus 232 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 232 GLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 223455677888888888888888888888877777777788888877654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=89.13 E-value=0.99 Score=43.16 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=52.6
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHHccCCCchh-hhhhHHHHHHhccChHHHHHHhhhhhccChhh
Q 000134 1119 DELLSNKKSGNWAEVFTSCEQALQMEPTSVQ-RHSDVLNCLLNMCHLQAMVTHVDGLISRIPQY 1181 (2096)
Q Consensus 1119 ~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~-~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~ 1181 (2096)
.+...+...|+|++|..+|+.+++..|++.. ....+=.|+..+|+++....+.+..+...|+.
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 3556678899999999999999999999988 88888889999999998888777665555543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=88.99 E-value=1.4 Score=46.88 Aligned_cols=124 Identities=7% Similarity=-0.017 Sum_probs=85.6
Q ss_pred HcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcc
Q 000134 1361 LAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVL 1438 (2096)
Q Consensus 1361 Kag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1438 (2096)
+.|.++.|...+.++.... .+.+....|.++...|+..+|+..++++++..| .
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-------------------~------ 76 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-------------------E------ 76 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-------------------S------
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------------------C------
Confidence 3566677777777766554 456788999999999999999999999876211 0
Q ss_pred cccccchhchhHHHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcc
Q 000134 1439 SNTQTLNEKRDIAKTLLLYSRW-IHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPS 1517 (2096)
Q Consensus 1439 ~~~q~~~~~~~~Aka~LllakW-l~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~g~~ 1517 (2096)
.+.++..+|.. ....|+...++.++.|.++++.+|....+|+.+|..|... |
T Consensus 77 -----------~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------------g-- 129 (177)
T 2e2e_A 77 -----------NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQ--------------A-- 129 (177)
T ss_dssp -----------CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------T--
T ss_pred -----------CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--------------c--
Confidence 03355666666 4455553348889999999999999999999999876432 1
Q ss_pred hhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1518 EKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1518 ~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
-...|+..|-+++...+..
T Consensus 130 ------~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 130 ------NYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp ------CHHHHHHHHHHHHHTCCTT
T ss_pred ------cHHHHHHHHHHHHhhCCCC
Confidence 1235788888888766553
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=88.79 E-value=14 Score=44.57 Aligned_cols=113 Identities=8% Similarity=0.024 Sum_probs=84.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHhhc----CCC----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1355 YAKLCRLAGHYETATRAILEAQAS----GAP----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1355 ~AklARKag~~~~A~~all~a~~~----~~~----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
.+......|.++.|.....+|... +++ .+....|.+++..|+..+|+..++++++-.+.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~------------- 175 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKE------------- 175 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-------------
Confidence 899999999999999999998765 332 45677889999999999999999998762110
Q ss_pred cCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH------HHHHHHHhhhH
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE------KGYFYMAKYCD 1498 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~we------K~~~~la~y~d 1498 (2096)
........+.++..+|.-....|+ .++.+..|.+|+++.++.. .+++.+|..|.
T Consensus 176 ----------------~~~~~~~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~ 235 (383)
T 3ulq_A 176 ----------------HEAYNIRLLQCHSLFATNFLDLKQ--YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN 235 (383)
T ss_dssp ----------------CSTTHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ----------------CccchHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 000123457788888887776665 8889999999998866443 46667776653
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=88.32 E-value=64 Score=40.81 Aligned_cols=169 Identities=11% Similarity=0.114 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHH-------hCCCC-----HHHHHHHHHHHHH-hccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcc
Q 000134 1451 AKTLLLYSRWIHY-------TGQKQ-----KEDVITLYSRVRE-LQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPS 1517 (2096)
Q Consensus 1451 Aka~LllakWl~~-------~~~~~-----~~~i~~~Y~~a~~-l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~g~~ 1517 (2096)
+.+++.+|.|+.. .|... .+++++.|.+|++ ..|+....|+.+|.++.+. |
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~--------------g-- 335 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR--------------M-- 335 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT--------------T--
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc--------------C--
Confidence 5678899999876 35433 3488999999997 8999999999999887532 1
Q ss_pred hhhhhchHHHHHHHHHHhhccCCcchhhhHHHHHHhhhhcCccccccCCCChhhhHhHHHHHHHHHHhhcCCCCCchhhh
Q 000134 1518 EKRWWFYVPDVLLFYAKGLHRGHKNLFQALPRLLTLWFDFGSICQRAGSSSNKDLKNVNGKVMSIMRGCLKDLPAYQWLT 1597 (2096)
Q Consensus 1518 ~~~~~~~l~~ai~~Y~~sl~~g~~~~~q~lpRlLtLWl~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iP~~~wl~ 1597 (2096)
-...|...|-+++...+.... .+|..++....+ .+...+..+++++.+..-|.. +-.
T Consensus 336 ------~~~~A~~~~~~al~~~p~~~~-------~~~~~~~~~~~~---------~~~~~~A~~~~~~Al~~~~~~-~~~ 392 (530)
T 2ooe_A 336 ------KYEKVHSIYNRLLAIEDIDPT-------LVYIQYMKFARR---------AEGIKSGRMIFKKAREDARTR-HHV 392 (530)
T ss_dssp ------CHHHHHHHHHHHHHSSSSCHH-------HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTCTTCC-THH
T ss_pred ------CHHHHHHHHHHHhCccccCch-------HHHHHHHHHHHH---------hcCHHHHHHHHHHHHhccCCc-hHH
Confidence 123578888888887665321 156665542110 111223345666666654432 111
Q ss_pred hh--HHhhhccccCchHHHHHHHHHHHHHHHhchhh-HHHHHHHhhcCCChhHHHHHHHHHHHHHhcCC
Q 000134 1598 VL--PQLVSRICHQNEEIVRLVKHIITSVLRQYPQQ-GLWIMAAVSKSTIPSRREAAAEIIQAAKKGSA 1663 (2096)
Q Consensus 1598 ~l--PQLisRl~h~~~~v~~~l~~il~kv~~~yPqq-~lw~l~~~~~S~~~~R~~~~~~Il~~~~~~~~ 1663 (2096)
++ -++--. ...+ .+-...+..+..+.+|.. .+|.-.+-.... ..+.+.|..+++++....+
T Consensus 393 ~~~~a~~~~~-~~~~---~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~-~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 393 YVTAALMEYY-CSKD---KSVAFKIFELGLKKYGDIPEYVLAYIDYLSH-LNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHHHHHH-HTCC---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-TTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHH-HcCC---hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHh-CCCHhhHHHHHHHHHhccC
Confidence 11 111111 1222 244566677777778864 566555543222 3456677888888766543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=88.32 E-value=1.1 Score=41.54 Aligned_cols=60 Identities=13% Similarity=0.216 Sum_probs=47.4
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~ 1180 (2096)
...+...|+|++|..+|+++++..|++......+-.|+..+|+++....+.+......|+
T Consensus 16 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (91)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 344667899999999999999999988888888888899999998887776655444443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.28 E-value=5.4 Score=45.71 Aligned_cols=123 Identities=20% Similarity=0.114 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc------CC----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS------GA----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVV 1416 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~------~~----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~ 1416 (2096)
.....|...+.+....|+++.|...+.+|... ++ ..+....|.+++..|+..+|+..++++++.....
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~-- 144 (311)
T 3nf1_A 67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV-- 144 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh--
Confidence 45678899999999999999999988887654 22 2366778999999999999999999987521000
Q ss_pred cccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------ccchHH
Q 000134 1417 GSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVREL--------QPMWEK 1488 (2096)
Q Consensus 1417 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l--------~~~weK 1488 (2096)
.....+..+.++..+|......|+ .++.+..|.++++. .+....
T Consensus 145 --------------------------~~~~~~~~~~~~~~la~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 196 (311)
T 3nf1_A 145 --------------------------LGKDHPDVAKQLNNLALLCQNQGK--YEEVEYYYQRALEIYQTKLGPDDPNVAK 196 (311)
T ss_dssp --------------------------HCTTCHHHHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHHHHHTSCTTCHHHHH
T ss_pred --------------------------cCCCChHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 001123456777888887766654 78899999999988 666677
Q ss_pred HHHHHHhhhHH
Q 000134 1489 GYFYMAKYCDD 1499 (2096)
Q Consensus 1489 ~~~~la~y~d~ 1499 (2096)
+++.+|..|..
T Consensus 197 ~~~~la~~~~~ 207 (311)
T 3nf1_A 197 TKNNLASCYLK 207 (311)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887643
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=87.95 E-value=1.3 Score=51.97 Aligned_cols=85 Identities=12% Similarity=0.035 Sum_probs=66.3
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCCh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRW 1199 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~W 1199 (2096)
....+...|+|++|..+|+.+++..|++.....++-.|+..+|+|+......+......|+...-+.. ...+...+|+|
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~ 88 (281)
T 2c2l_A 10 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF-LGQCQLEMESY 88 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHH-HHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCH
Confidence 45567789999999999999999999999888888999999999999888887766666655443333 34456678888
Q ss_pred hhHHHh
Q 000134 1200 DLMDEY 1205 (2096)
Q Consensus 1200 d~l~~~ 1205 (2096)
+.-.++
T Consensus 89 ~~A~~~ 94 (281)
T 2c2l_A 89 DEAIAN 94 (281)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.76 E-value=2.9 Score=45.55 Aligned_cols=112 Identities=7% Similarity=0.097 Sum_probs=74.4
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~ 1124 (2096)
.++...++-+.|..|+-+++..+...... +. ....... +.+ ..+. ..........|
T Consensus 43 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~------~~~~~~~----------~~~--~~~~----~~~~~~la~~~ 98 (198)
T 2fbn_A 43 EEGNEFFKKNEINEAIVKYKEALDFFIHT--EE------WDDQILL----------DKK--KNIE----ISCNLNLATCY 98 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTC--TT------CCCHHHH----------HHH--HHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcc--cc------cchhhHH----------HHH--HHHH----HHHHHHHHHHH
Confidence 57888999999999999999987643221 10 0000000 000 0000 00011234457
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChh
Q 000134 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2096)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~ 1180 (2096)
.+.|+|++|..+|+++++..|++......+-.|+..+|+++....+.+......|+
T Consensus 99 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 99 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 78899999999999999999999888888888999999999887777665544443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=87.66 E-value=52 Score=39.07 Aligned_cols=60 Identities=22% Similarity=0.272 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCC----hHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1350 NCWLQYAKLCRLAGHYETATRAILEAQAS----GAP----NVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1350 ~~WL~~AklARKag~~~~A~~all~a~~~----~~~----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
..|...+++....|+++.|...+.++... +.+ .+....|.+++..|+..+|...+++++.
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 36788899999999999999888776433 221 3666779999999999999999999875
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=87.55 E-value=64 Score=43.68 Aligned_cols=260 Identities=10% Similarity=0.012 Sum_probs=131.2
Q ss_pred hcCChhHHHHHHHHHHHHHhhhcccchhHHH-HHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhh
Q 000134 251 AADDPLILETLLESTAELMMAVDVHSQHFLF-LLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICN 329 (2096)
Q Consensus 251 ~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~-~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~ 329 (2096)
...++.++|-...+++.|.+-..-...+.-. ++-.||..|.+.++.++-.|..-|.++|....... .+... .+ .
T Consensus 505 ~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~--~~~~~--~~-~ 579 (810)
T 3now_A 505 KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV--SFSGQ--RS-L 579 (810)
T ss_dssp TCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH--HTTTH--HH-H
T ss_pred cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhh--hhcch--hh-h
Confidence 3477899999999999994322222222222 23448888888889999999999999987654311 11000 01 1
Q ss_pred hhhHHHHHHhcCchHHH------HHHHHHHhCCChHHHHHhhcccccchhhhc--cccChhHHHHHHHHHHHcCCC-chh
Q 000134 330 ELFDYLSVRLASRPIMV------REFAEAAFGVETEELVKKMIPAVLPKLVVS--QQDNDQAVNIINELAKCLNTD-MVP 400 (2096)
Q Consensus 330 ~l~~~~~~~l~~rp~~~------~~~~e~llg~~~~~fL~~~~~~~LP~LVl~--~~~~~~~~~~i~~ia~~~~~~-~~~ 400 (2096)
..-++++.-|.+.+... ..++. |...+.+.=-.......+|.|+-- .............|++....+ ...
T Consensus 580 ~aIppLv~LL~~~~~~l~~~eAl~AL~N-La~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~ 658 (810)
T 3now_A 580 DVIRPLLNLLQQDCTALENFESLMALTN-LASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK 658 (810)
T ss_dssp HTHHHHHHTTSTTSCHHHHHHHHHHHHH-HTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH
T ss_pred cHHHHHHHHhCCCCcHHHHHHHHHHHHH-HhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH
Confidence 13456666554332222 22332 444432111112334567888742 222222234455555533322 222
Q ss_pred HHhh--hHHHHHHHHhccccH---HHHHHHHHHHhhhcCCChHHHHH-H-hhHHHHHHHHHhhcCCCchhHhhhhcchhH
Q 000134 401 LIVT--WIPKVLAFALHQADE---RRLLSALEFYCIQTGSDNQEIFA-A-ALPALLDELICFVDGGDSDEINERLNRVPR 473 (2096)
Q Consensus 401 l~~~--~~~~Ila~ll~~~~~---~~~~~~l~~~~~~~~~~~~~~~~-~-~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~ 473 (2096)
.+.+ ..-.+|..|+..++. .....+|..+........+.++. + .+|.++ +|+ ..++.+ ..+ .
T Consensus 659 ~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv-~LL---~s~d~~-vq~------~ 727 (810)
T 3now_A 659 MFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILH-TLI---ANPSPA-VQH------R 727 (810)
T ss_dssp HHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHH-HHH---TCSSHH-HHH------H
T ss_pred HHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHH-HHH---CCCCHH-HHH------H
Confidence 2322 334455555554443 34556666666542223345554 2 334333 443 344332 221 2
Q ss_pred HHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCC--CChHHHHHHHHHHHHHHHH
Q 000134 474 VIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHA--EDLSLQKQALKRIEILIEM 529 (2096)
Q Consensus 474 ~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~--~~~~~k~~~l~sl~~li~l 529 (2096)
+...+.++..++.....++.+. |.+..+-.-+..+ ++.+....++.+|..++++
T Consensus 728 A~~aL~NL~~~s~e~~~~l~e~--G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 728 GIVIILNMINAGEEIAKKLFET--DIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTS--THHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHC--CCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 2333344444544455555554 6666665433223 3556667788888887765
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=87.36 E-value=5.9 Score=40.08 Aligned_cols=119 Identities=11% Similarity=0.037 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CCC----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GAP----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGS 1418 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~----~~~----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~ 1418 (2096)
..+..|...+.+....|.++.|...+.+|... +++ .+....|.+++..|+..+|+..+++++.-.+.
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~----- 81 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ----- 81 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----
Confidence 45778899999999999999999988887654 222 36677899999999999999999998752100
Q ss_pred cccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccch------HHHHHH
Q 000134 1419 TAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMW------EKGYFY 1492 (2096)
Q Consensus 1419 ~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~w------eK~~~~ 1492 (2096)
.......+.++..+|......|+ .++....|++++++.+.. ..+++.
T Consensus 82 -------------------------~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 134 (164)
T 3ro3_A 82 -------------------------LKDRAVEAQSCYSLGNTYTLLQD--YEKAIDYHLKHLAIAQELKDRIGEGRACWS 134 (164)
T ss_dssp -------------------------TTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------------------hCCcHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHccchHhHHHHHHH
Confidence 00122446677778877766665 788888999888775432 234555
Q ss_pred HHhhh
Q 000134 1493 MAKYC 1497 (2096)
Q Consensus 1493 la~y~ 1497 (2096)
+|..|
T Consensus 135 la~~~ 139 (164)
T 3ro3_A 135 LGNAY 139 (164)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=87.13 E-value=6.5 Score=43.72 Aligned_cols=137 Identities=11% Similarity=-0.007 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcC----CchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTR----RSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~~~~~iE~AKLLW~~g----~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
...+...+.+....|.++.|...+.+|...+.+.+...-+.++.. | +..+|+..++++++. |
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~------g------- 83 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA------G------- 83 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT------T-------
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC------C-------
Confidence 566788888888899999999999999999999999999998887 6 789999999987541 0
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHhcc--chHHHHHHHHhhhHHH
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHY-TG-QKQKEDVITLYSRVRELQP--MWEKGYFYMAKYCDDV 1500 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~-~~-~~~~~~i~~~Y~~a~~l~~--~weK~~~~la~y~d~l 1500 (2096)
.+.++..+|..... .+ ..+.+..++.|++|.+..+ ....+++.||..|..-
T Consensus 84 -------------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 84 -------------------------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASG 138 (212)
T ss_dssp -------------------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHT
T ss_pred -------------------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcC
Confidence 03456666665532 12 4568889999999999887 4578999999987431
Q ss_pred HHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhcc-CCcc
Q 000134 1501 LVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHR-GHKN 1542 (2096)
Q Consensus 1501 ~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~-g~~~ 1542 (2096)
. |. . .-...++..|-+++.. |+..
T Consensus 139 ~-------------g~-~----~d~~~A~~~~~~A~~~~~~~~ 163 (212)
T 3rjv_A 139 V-------------HG-P----EDDVKASEYFKGSSSLSRTGY 163 (212)
T ss_dssp S-------------SS-S----CCHHHHHHHHHHHHHTSCTTH
T ss_pred C-------------CC-C----CCHHHHHHHHHHHHHcCCCHH
Confidence 0 00 0 1134688888888887 5544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=87.02 E-value=1.3 Score=43.06 Aligned_cols=52 Identities=10% Similarity=0.064 Sum_probs=45.1
Q ss_pred HHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhh
Q 000134 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDG 1173 (2096)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~g 1173 (2096)
..+...|+|++|..+|+++++..|++......+=.|+..+|+++......+.
T Consensus 15 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 15 QEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3466889999999999999999999998888888999999999987665553
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=86.90 E-value=73 Score=39.97 Aligned_cols=107 Identities=11% Similarity=0.082 Sum_probs=68.5
Q ss_pred HHhhcccHHHHHHHHHHHhHhhhhhh-hhhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhccc
Q 000134 197 FLLLNKRKAIRDAFCTQIGYFLQDTV-LSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVH 275 (2096)
Q Consensus 197 ~~~~~~~r~vR~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~ 275 (2096)
.+|.+++..+|..+...+..+-.+.- -..++ .....+..+-+.+...+|+.+++....+++.+.......
T Consensus 24 ~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~---------~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~ 94 (529)
T 1jdh_A 24 KLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM---------RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL 94 (529)
T ss_dssp HHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHH---------TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHcCCccHHHHH---------hCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhH
Confidence 34577888888888888877541110 00000 012345556666666678889999999888874322211
Q ss_pred chhHHH-HHHHHHHhhCCCCcchHHHHHHHHHHHhhhh
Q 000134 276 SQHFLF-LLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2096)
Q Consensus 276 ~e~~~~-~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~ 312 (2096)
..+... ++-.|++.|.++++-++..|..-|.++|...
T Consensus 95 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 132 (529)
T 1jdh_A 95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 132 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 111111 3445899999999999999999999998764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=86.79 E-value=1.1 Score=54.31 Aligned_cols=114 Identities=15% Similarity=0.045 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCCh-------------------HHHHHHHHHHHcCCchHHHHHHHHH
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGAPN-------------------VHMEKAKLLWSTRRSDGAIAELQQN 1407 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~~-------------------~~iE~AKLLW~~g~~~~Ai~~L~~~ 1407 (2096)
..+..|...+..+.+.|.++.|.....+|..+.+.. +....|..+...|+..+|+..++++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356678899999999999999999999887765432 5677888899999999999999988
Q ss_pred hhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchH
Q 000134 1408 LLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWE 1487 (2096)
Q Consensus 1408 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~we 1487 (2096)
+...| ..++++..+|..+...|+ .++.+..|++|+++.|...
T Consensus 257 l~~~p------------------------------------~~~~a~~~lg~a~~~~g~--~~~A~~~l~~al~l~p~~~ 298 (338)
T 2if4_A 257 LTEEE------------------------------------KNPKALFRRGKAKAELGQ--MDSARDDFRKAQKYAPDDK 298 (338)
T ss_dssp HHHCT------------------------------------TCHHHHHHHHHHHHTTTC--HHHHHHHHHHTTC------
T ss_pred HHhCC------------------------------------CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHCCCCH
Confidence 75211 114567777776655554 7888999999999999888
Q ss_pred HHHHHHHhhhH
Q 000134 1488 KGYFYMAKYCD 1498 (2096)
Q Consensus 1488 K~~~~la~y~d 1498 (2096)
.++..++....
T Consensus 299 ~a~~~L~~l~~ 309 (338)
T 2if4_A 299 AIRRELRALAE 309 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 88877776543
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=86.51 E-value=1.2e+02 Score=42.16 Aligned_cols=105 Identities=10% Similarity=0.031 Sum_probs=72.5
Q ss_pred ccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHhhh--cCC--hhHHHHHHHHHHHHHhhhcccch
Q 000134 202 KRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTA--ADD--PLILETLLESTAELMMAVDVHSQ 277 (2096)
Q Consensus 202 ~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~d--~~i~eTll~~~~~i~~~~~~~~e 277 (2096)
.+=..|+|++-.++++.+... ....+..--.++..+-..... .+| +.++.|.+-++|+...=...+.+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~--------~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~ 536 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMS--------EDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN 536 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSC--------HHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH
T ss_pred CCHHHHHHHHHHHHHHHcCCC--------chhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH
Confidence 577889999999999662111 000111112233333332322 122 45789999999998776667889
Q ss_pred hHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcc
Q 000134 278 HFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLK 314 (2096)
Q Consensus 278 ~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~ 314 (2096)
.+.-++-.|++.|..+|+-|...|..-|.++|..+..
T Consensus 537 ~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~ 573 (1023)
T 4hat_C 537 FLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1023)
T ss_dssp HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999888999999999999999988765
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=86.39 E-value=6 Score=46.64 Aligned_cols=155 Identities=6% Similarity=-0.031 Sum_probs=87.4
Q ss_pred HHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHH----Hh-ccCC-----
Q 000134 1047 ARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLAR----LH-KSLS----- 1116 (2096)
Q Consensus 1047 A~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~----~~-~~~s----- 1116 (2096)
+..-...+.|..|+-+++.-+.-.....++. ..-..+..+..+|..+++++....... +. ..-+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLF------HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4455667889999998887654322111110 001245566667777776665544432 11 0001
Q ss_pred --hhHHHHHhHhhcCHHHHHHHHHHHHccCCCc------hhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhh----h
Q 000134 1117 --LQDELLSNKKSGNWAEVFTSCEQALQMEPTS------VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKK----T 1184 (2096)
Q Consensus 1117 --l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~------~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~----~ 1184 (2096)
...-...|+. |++++|..+|+++++..|.. ......+-.++..+|+|+..+.+.+..+...++... .
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 1122345677 99999999999999765532 233445667788899999887777654432222111 0
Q ss_pred -HhHHHHHHHHhcCChhhHHHhhcc
Q 000134 1185 -WCMQGVQAAWRLGRWDLMDEYLSG 1208 (2096)
Q Consensus 1185 -~~~~~vEAAWrlg~Wd~l~~~l~~ 1208 (2096)
.......+...+|+++.-.+++..
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 111122344456888776665544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=86.21 E-value=1 Score=57.28 Aligned_cols=110 Identities=12% Similarity=-0.005 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
+..|...|..+.+.|.++.|.....+|.+..+ +.+....|..+...|+..+|+..++++++-.|
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-------------- 71 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-------------- 71 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--------------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------------
Confidence 34455566677889999999999999987754 46778899999999999999999999876311
Q ss_pred cCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y 1496 (2096)
..++++..+|.-....|+ .+++++.|++|++++|....+++.+|..
T Consensus 72 ----------------------~~~~~~~~lg~~~~~~g~--~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 72 ----------------------KYIKGYYRRAASNMALGK--FRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp ----------------------TCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 013455566665555554 7889999999999999888888888775
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.08 E-value=3.4 Score=39.66 Aligned_cols=30 Identities=7% Similarity=-0.056 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhccch------HHHHHHHHhhhH
Q 000134 1469 KEDVITLYSRVRELQPMW------EKGYFYMAKYCD 1498 (2096)
Q Consensus 1469 ~~~i~~~Y~~a~~l~~~w------eK~~~~la~y~d 1498 (2096)
.++.++.|+++++++|.. .++++.+|..+.
T Consensus 54 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~ 89 (111)
T 2l6j_A 54 YTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQG 89 (111)
T ss_dssp HHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHH
Confidence 444555555555555554 455555555544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=85.94 E-value=4.7 Score=47.08 Aligned_cols=99 Identities=11% Similarity=0.055 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
+..|...|....+.|+++.|...+.+|.... .+.+....|..+...|+..+|+..++++++..|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-------------- 69 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-------------- 69 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------------
Confidence 5678899999999999999999999998765 456788999999999999999999999875211
Q ss_pred cCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~ 1485 (2096)
..++++..+|.-+...|+ .++.++.|++|.++.|.
T Consensus 70 ----------------------~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 70 ----------------------QSVKAHFFLGQCQLEMES--YDEAIANLQRAYSLAKE 104 (281)
T ss_dssp ----------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCcc
Confidence 013456666666655554 77888889999888874
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=85.75 E-value=4.9 Score=37.06 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000134 1453 TLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2096)
Q Consensus 1453 a~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~ 1497 (2096)
++..+|......++ .++.++.|.++++.+|.-..+++.+|..+
T Consensus 45 ~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 45 AWYNLGNAYYKQGD--YDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34444444444433 56666667777777766666666666554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=85.63 E-value=2.2 Score=53.95 Aligned_cols=89 Identities=9% Similarity=0.092 Sum_probs=68.4
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCc---------------hhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTS---------------VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKT 1184 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~---------------~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~ 1184 (2096)
+...+.+.|+|++|..+|+++++..|++ ...+..+=.|+..+|+|+..+.+.+..+...|+....
T Consensus 274 ~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a 353 (457)
T 1kt0_A 274 KGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKG 353 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHH
Confidence 4556778999999999999999988887 4667788889999999999988888766666654443
Q ss_pred HhHHHHHHHHhcCChhhHHHhhccc
Q 000134 1185 WCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2096)
Q Consensus 1185 ~~~~~vEAAWrlg~Wd~l~~~l~~~ 1209 (2096)
++ ....|...+|+|+.-.+++..+
T Consensus 354 ~~-~~g~a~~~~g~~~~A~~~~~~a 377 (457)
T 1kt0_A 354 LY-RRGEAQLLMNEFESAKGDFEKV 377 (457)
T ss_dssp HH-HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HH-HHHHHHHHccCHHHHHHHHHHH
Confidence 33 3456778899998776665543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=85.50 E-value=0.94 Score=45.18 Aligned_cols=56 Identities=11% Similarity=0.070 Sum_probs=47.8
Q ss_pred HHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhcc
Q 000134 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISR 1177 (2096)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~ 1177 (2096)
..|...|++++|..+|+++++..|++......+-.|+..+|+++..+...+..+..
T Consensus 35 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 35 STFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34678999999999999999999999988888999999999999887766654443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=85.03 E-value=6.1 Score=43.92 Aligned_cols=148 Identities=13% Similarity=0.078 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHcC----ChHHHHHHHHHHhhcCCChHHHHHHHHHHH----cCCchHHHHHHHHHhhcCCcccccccc
Q 000134 1349 GNCWLQYAKLCRLAG----HYETATRAILEAQASGAPNVHMEKAKLLWS----TRRSDGAIAELQQNLLNKPVEVVGSTA 1420 (2096)
Q Consensus 1349 ~~~WL~~AklARKag----~~~~A~~all~a~~~~~~~~~iE~AKLLW~----~g~~~~Ai~~L~~~i~~~~~~~~~~~~ 1420 (2096)
...+...+.+-.. | .++.|...+.+|...+.+.+...-+.++.. .++..+|+..++++++..+
T Consensus 50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~-------- 120 (212)
T 3rjv_A 50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE-------- 120 (212)
T ss_dssp HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT--------
T ss_pred HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC--------
Confidence 3456666766666 5 789999999999888999999999999887 8899999999998864210
Q ss_pred cccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000134 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYT-G-QKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2096)
Q Consensus 1421 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~-~-~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d 1498 (2096)
....+.++..+|.....- + ..+.+..++.|++|++. +....+++.+|..|.
T Consensus 121 --------------------------~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~ 173 (212)
T 3rjv_A 121 --------------------------SDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQ 173 (212)
T ss_dssp --------------------------SHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHH
T ss_pred --------------------------CcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 002255777888766542 2 45689999999999998 445568999999874
Q ss_pred HHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcchhhhHH
Q 000134 1499 DVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQALP 1548 (2096)
Q Consensus 1499 ~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~~~q~lp 1548 (2096)
+-. .|... .-...++..|-+++..|+......+-
T Consensus 174 ~g~------------gg~~~----~d~~~A~~~~~~A~~~g~~~A~~~l~ 207 (212)
T 3rjv_A 174 QGE------------KGFIE----PNKQKALHWLNVSCLEGFDTGCEEFD 207 (212)
T ss_dssp HCB------------TTTBC----CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCC------------CCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 210 00000 01346899999999999876544443
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=85.01 E-value=5.9 Score=43.82 Aligned_cols=58 Identities=12% Similarity=0.095 Sum_probs=35.2
Q ss_pred HHHHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHh
Q 000134 148 LLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYF 217 (2096)
Q Consensus 148 ~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~ 217 (2096)
.-+.+.++|.+ .+.+|+..++..|.++-.. + .+.-|..++.|++..||.++...+..+
T Consensus 51 ~~~~L~~~l~~-~~~~vr~~a~~aL~~~~~~---~--------~~~~L~~~l~~~~~~vr~~a~~aL~~~ 108 (211)
T 3ltm_A 51 AVEPLIKALKD-EDAWVRRAAADALGQIGDE---R--------AVEPLIKALKDEDGWVRQSAAVALGQI 108 (211)
T ss_dssp GHHHHHHHTTC-SCHHHHHHHHHHHHHHCCG---G--------GHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHhhCCH---H--------HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 34445666654 4677888888777776321 1 111222334788888888888877764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=84.97 E-value=38 Score=39.15 Aligned_cols=119 Identities=11% Similarity=-0.035 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--------hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccc
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASGAP--------NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGST 1419 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~~~--------~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~ 1419 (2096)
....|+.-+......|.++.|...+.++...... .+..-.+.++..+|+..+|+..++++++..+..
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~----- 148 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG----- 148 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS-----
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-----
Confidence 3456778888899999999999988877654322 122334566678889999999999987521100
Q ss_pred ccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---ccchH----HHHHH
Q 000134 1420 AISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVREL---QPMWE----KGYFY 1492 (2096)
Q Consensus 1420 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l---~~~we----K~~~~ 1492 (2096)
......+.++..+|.-....|+ .++.+..|.+|.+. .+... .+++.
T Consensus 149 -------------------------~~~~~~~~~~~~lg~~y~~~~~--~~~A~~~~~kal~~~~~~~~~~~~~~~~~~n 201 (293)
T 2qfc_A 149 -------------------------IDVYQNLYIENAIANIYAENGY--LKKGIDLFEQILKQLEALHDNEEFDVKVRYN 201 (293)
T ss_dssp -------------------------SCTTHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred -------------------------CchHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhcCccccchHHHHHh
Confidence 0011236677777776666554 78899999999854 33211 46777
Q ss_pred HHhhhH
Q 000134 1493 MAKYCD 1498 (2096)
Q Consensus 1493 la~y~d 1498 (2096)
+|..|.
T Consensus 202 lg~~y~ 207 (293)
T 2qfc_A 202 HAKALY 207 (293)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777664
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=84.40 E-value=0.5 Score=47.25 Aligned_cols=81 Identities=12% Similarity=0.074 Sum_probs=59.0
Q ss_pred hhcCHHHHHHHHHHHHcc---CCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhhH
Q 000134 1126 KSGNWAEVFTSCEQALQM---EPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDLM 1202 (2096)
Q Consensus 1126 ~~G~W~~A~~~YE~~Lq~---~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~l 1202 (2096)
..|++++|..+|+++++. .|++.....++-.|+..+|+++..+.+.+......|+...-+. ....+-..+|+++.-
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRV-FYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHH-HHHHHHHHcCCHHHH
Confidence 468999999999999998 5888888888999999999999998888877666666533333 334567788888776
Q ss_pred HHhhc
Q 000134 1203 DEYLS 1207 (2096)
Q Consensus 1203 ~~~l~ 1207 (2096)
.+++.
T Consensus 81 ~~~~~ 85 (117)
T 3k9i_A 81 VELLL 85 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.08 E-value=57 Score=46.35 Aligned_cols=103 Identities=9% Similarity=0.101 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHh-----ccccc-cchhhHHHHHHH-HhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhh-
Q 000134 519 ALKRIEILIEMI-----GSHLT-TYVPKILVLLMH-AINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIP- 590 (2096)
Q Consensus 519 ~l~sl~~li~l~-----g~~v~-~~~pqI~a~L~~-aL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip- 590 (2096)
.+..++.+++-+ ++++. ...|+++..|.+ -.+.|-++...+.||..+..-++. .|+.+.+++.-++..+.-
T Consensus 506 ~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~-~p~~L~~vL~~ll~~l~~~ 584 (1204)
T 3a6p_A 506 MTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTY-RPEFLPQVFSKLFSSVTFE 584 (1204)
T ss_dssp HHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGT-CGGGHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHhhccC
Confidence 344555555554 34554 367888887655 345677888999999988887764 577889999988888742
Q ss_pred cccc-CCC---CchhhHHHHHHHHHHHHHHhHHHHH
Q 000134 591 FLER-DKD---NPSVLLNKVVKILEDLVLKNRAILK 622 (2096)
Q Consensus 591 ~~~~-~~~---~~~~~~~~~~~il~~Li~~n~~~L~ 622 (2096)
..+. .+. ..+..+..|...|.+|-.+.++.|.
T Consensus 585 ~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~~~L~ 620 (1204)
T 3a6p_A 585 TVEESKAPRTRAVRNVRRHACSSIIKMCRDYPQLVL 620 (1204)
T ss_dssp TTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred CcccccccccHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 1110 000 1224667888899999998888875
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=83.87 E-value=2.2 Score=42.05 Aligned_cols=54 Identities=9% Similarity=0.051 Sum_probs=44.8
Q ss_pred HhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhc
Q 000134 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLIS 1176 (2096)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~ 1176 (2096)
.+...|+|++|..+|+++++..|++......+-.|+..+|+++......+....
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 28 TYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356789999999999999999999888888888899999999887776655433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=83.51 E-value=7.7 Score=46.54 Aligned_cols=153 Identities=16% Similarity=0.072 Sum_probs=98.4
Q ss_pred HHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCCh-----h
Q 000134 1044 VTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSL-----Q 1118 (2096)
Q Consensus 1044 ~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl-----~ 1118 (2096)
.++|.+....|.|..||..++..+..... + ...+.+-.+..||-.++.+|-..-+.......+. +
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~---~-------~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~ 173 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDNDEA---E-------GTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGD 173 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSSCS---T-------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhccCCC---c-------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccc
Confidence 37899999999999999999998653210 0 1235667899999999999999998864322222 1
Q ss_pred HHHHH-------h--HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhh--------
Q 000134 1119 DELLS-------N--KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQY-------- 1181 (2096)
Q Consensus 1119 ~qil~-------~--E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~-------- 1181 (2096)
+.++. . ...++..+|...|+.+.+..|+ ......+++|...+|+|+.+....+.+....|+.
T Consensus 174 d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~-~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p 252 (310)
T 3mv2_B 174 NEMILNLAESYIKFATNKETATSNFYYYEELSQTFPT-WKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVL 252 (310)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS-HHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHS
T ss_pred hHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC-cccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCC
Confidence 22211 1 2234999999999998888876 2223456669999999998776665444332221
Q ss_pred -hhhHhHHHHHHHHhcCChhhHHHhhccc
Q 000134 1182 -KKTWCMQGVQAAWRLGRWDLMDEYLSGA 1209 (2096)
Q Consensus 1182 -~~~~~~~~vEAAWrlg~Wd~l~~~l~~~ 1209 (2096)
..+...-.+-.+..+|+ .-++++.+.
T Consensus 253 ~~~~~LaN~i~l~~~lgk--~a~~l~~qL 279 (310)
T 3mv2_B 253 YKPTFLANQITLALMQGL--DTEDLTNQL 279 (310)
T ss_dssp SHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 11112123445666786 445665544
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=83.26 E-value=1e+02 Score=38.57 Aligned_cols=149 Identities=7% Similarity=0.053 Sum_probs=90.6
Q ss_pred HHHHHhhcccCccchhhHHHHHHHHHHccCCch-hhhhhhhHHHHHHHHHhh-cccHHHHHHHHHHHhHhhhhh-hhhhh
Q 000134 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD-VLLKTRSEWIKCIEFLLL-NKRKAIRDAFCTQIGYFLQDT-VLSSL 226 (2096)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~-~~~~~~~~w~~~~~~~~~-~~~r~vR~a~~~~~~~~~~~~-~~~~~ 226 (2096)
+.+.++|. ..+.+|+..++..|.++..+...- ..... ...+.-+-.+|. +++..+|..+++.+..+-.++ ....+
T Consensus 20 ~~Lv~lL~-~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~-~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i 97 (529)
T 1jdh_A 20 PELTKLLN-DEDQVVVNKAAVMVHQLSKKEASRHAIMRS-PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAI 97 (529)
T ss_dssp HHHHHHHT-CSCHHHHHHHHHHHHHHHTSHHHHHHHHTC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHHcCCccHHHHHhC-cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHH
Confidence 34556665 456788888999999998775421 11111 122332233334 458999999999999854111 11111
Q ss_pred ccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH--HHHHHHHHHhhCCCCcchHHHHHHH
Q 000134 227 FLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF--LFLLILLVEQLDNPHVTVRMNASRL 304 (2096)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~--~~~l~~Li~~L~~~n~~v~~~A~~~ 304 (2096)
+. ...+..+-+.+ ...|+.+++..+.+++.+....+...+.+ .-++-.|++.|.++++-++..|..-
T Consensus 98 ~~----------~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~ 166 (529)
T 1jdh_A 98 FK----------SGGIPALVKML-GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 166 (529)
T ss_dssp HH----------TTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred HH----------cCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 11 12344444433 34678899999999999854322222222 2245568999999999999988888
Q ss_pred HHHHhhh
Q 000134 305 IRKSCFF 311 (2096)
Q Consensus 305 i~~l~~~ 311 (2096)
+.++|..
T Consensus 167 L~~la~~ 173 (529)
T 1jdh_A 167 LQILAYG 173 (529)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 8888753
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.25 E-value=1.8e+02 Score=41.30 Aligned_cols=45 Identities=13% Similarity=0.225 Sum_probs=32.1
Q ss_pred CCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHHH
Q 000134 291 DNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVR 338 (2096)
Q Consensus 291 ~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~ 338 (2096)
.+.++.+|..|...+.+..++++.. +-..-+..||+.+..++...
T Consensus 57 ~s~~~~vR~~A~~~Lk~~I~~~W~~---l~~e~k~~Ir~~ll~~l~~~ 101 (1204)
T 3a6p_A 57 KTQVAIVRHFGLQILEHVVKFRWNG---MSRLEKVYLKNSVMELIANG 101 (1204)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHSGGG---SCHHHHHHHHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHHhh
Confidence 4567899999999999988887753 33344556777777776654
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=82.98 E-value=9.2 Score=45.54 Aligned_cols=139 Identities=10% Similarity=0.045 Sum_probs=90.6
Q ss_pred cchhhHHHHHHHHHHccCC-chhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhh-hhh-hhccCcccccchhh
Q 000134 162 EEVQLSCVRVIRRILVHGT-RDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDT-VLS-SLFLDENASSRSNE 238 (2096)
Q Consensus 162 ~~v~~~~~~~l~~il~h~~-~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~ 238 (2096)
.+-+......|..++.... .+...+ .+-+-.++..+|.+++..||..++.+|..+.++. -.. .+..
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~~~~~-~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~---------- 122 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAADFCQ-LSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLG---------- 122 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHH-TTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHhChhhHHHHHH-cCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH----------
Confidence 3456667788888776432 111222 2445456664669999999999999999976332 110 1111
Q ss_pred HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHH--HHHHHHHhhCCCCcchHHHHHHHHHHHhhh
Q 000134 239 LKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLF--LLILLVEQLDNPHVTVRMNASRLIRKSCFF 311 (2096)
Q Consensus 239 ~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~--~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~ 311 (2096)
...+..+-+.+....++.+++..+-+++.|.+......+.|.- .+-.|+..|.++++.++..|..-|.++|..
T Consensus 123 ~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 123 LGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp TTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 1244455555555557889999999999986533222333322 444688888899999999999999999775
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=82.83 E-value=72 Score=36.57 Aligned_cols=128 Identities=16% Similarity=0.054 Sum_probs=83.3
Q ss_pred HHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcc
Q 000134 152 YFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDEN 231 (2096)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~ 231 (2096)
+.++|-+ .+..|+...+..|.++- ..+ -+.-|..++.|++..||.++...+..+- .
T Consensus 28 L~~~L~~-~~~~vr~~A~~~L~~~~---~~~--------~~~~L~~~l~d~~~~vR~~A~~aL~~l~-----------~- 83 (280)
T 1oyz_A 28 LFRLLDD-HNSLKRISSARVLQLRG---GQD--------AVRLAIEFCSDKNYIRRDIGAFILGQIK-----------I- 83 (280)
T ss_dssp HHHHTTC-SSHHHHHHHHHHHHHHC---CHH--------HHHHHHHHHTCSSHHHHHHHHHHHHHSC-----------C-
T ss_pred HHHHHHc-CCHHHHHHHHHHHHccC---Cch--------HHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------c-
Confidence 5556654 56788888888888763 222 1223344569999999999998887632 0
Q ss_pred cccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHH
Q 000134 232 ASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKS 308 (2096)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l 308 (2096)
.......++..+.+.+..-+|+.+....+.++|.++.... +...-++-.|+..|.++++.||..|..-+-++
T Consensus 84 --~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~---~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 84 --CKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNP---IYSPKIVEQSQITAFDKSTNVRRATAFAISVI 155 (280)
T ss_dssp --CTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG---GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred --ccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC---cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence 0111223444455445566788999999999999853221 11112345577888999999999988877655
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=82.78 E-value=14 Score=40.47 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=37.7
Q ss_pred CChhhHHHHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHh
Q 000134 143 SDFSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYF 217 (2096)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~ 217 (2096)
...+...+.+.++|-+ .+.+|+...+..|.++-.. .. +.-|-.++.|++..||.++...+..+
T Consensus 10 ~~~~~~~~~~i~~L~~-~~~~vr~~A~~~L~~~~~~---~~--------~~~L~~~l~~~~~~vr~~a~~~L~~~ 72 (201)
T 3ltj_A 10 HTDPEKVEMYIKNLQD-DSYYVRRAAAYALGKIGDE---RA--------VEPLIKALKDEDAWVRRAAADALGQI 72 (201)
T ss_dssp CCCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHCCG---GG--------HHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred ccCCcchHHHHHHhcC-CCHHHHHHHHHHHHhcCCh---hH--------HHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 3445566767777654 4567888877777765321 10 11122233777888888877777664
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=82.73 E-value=1e+02 Score=38.25 Aligned_cols=138 Identities=12% Similarity=0.122 Sum_probs=98.2
Q ss_pred HHHHHHHHHH-H--HHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcC-----CchHHHHHHHHHhhcCCcccccccc
Q 000134 1349 GNCWLQYAKL-C--RLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTR-----RSDGAIAELQQNLLNKPVEVVGSTA 1420 (2096)
Q Consensus 1349 ~~~WL~~Akl-A--RKag~~~~A~~all~a~~~~~~~~~iE~AKLLW~~g-----~~~~Ai~~L~~~i~~~~~~~~~~~~ 1420 (2096)
...|...+.+ - ...|.++.|...+.+|...+.+.+...-+.++. .| +..+|+..++++. . |
T Consensus 248 ~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~------g--- 316 (452)
T 3e4b_A 248 PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G------R--- 316 (452)
T ss_dssp THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T------T---
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C------C---
Confidence 4456666665 3 568899999999999999999999998898877 66 8889999888653 1 0
Q ss_pred cccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000134 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTG---QKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2096)
Q Consensus 1421 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~---~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~ 1497 (2096)
.+.++..+|.+... | ..+.+...+.|++|.+.. ...+++.+|..|
T Consensus 317 -----------------------------~~~A~~~Lg~~y~~-G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y 364 (452)
T 3e4b_A 317 -----------------------------EVAADYYLGQIYRR-GYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLF 364 (452)
T ss_dssp -----------------------------CHHHHHHHHHHHHT-TTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHH
T ss_pred -----------------------------CHHHHHHHHHHHHC-CCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHH
Confidence 03466777765543 3 346888999999998754 467899999887
Q ss_pred HHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcchhhhH
Q 000134 1498 DDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKNLFQAL 1547 (2096)
Q Consensus 1498 d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~~~q~l 1547 (2096)
..= .|.. .-...++..|-++...|+......+
T Consensus 365 ~~G-------------~g~~-----~d~~~A~~~~~~A~~~g~~~a~~~l 396 (452)
T 3e4b_A 365 SQG-------------KGTK-----PDPLNAYVFSQLAKAQDTPEANDLA 396 (452)
T ss_dssp HSC-------------TTBC-----CCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HhC-------------CCCC-----CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 421 1110 1234688999999999987544333
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=82.66 E-value=1.8 Score=55.20 Aligned_cols=86 Identities=12% Similarity=0.094 Sum_probs=67.2
Q ss_pred HHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhh
Q 000134 1122 LSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDL 1201 (2096)
Q Consensus 1122 l~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~ 1201 (2096)
..+...|+|++|..+|+++++..|++......+-.|+.++|+|+..+.+.+......|+....+.. ...+...+|+|+.
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~-lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR-RAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHH-HHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCHHH
Confidence 346688999999999999999999998888888999999999999888877766666655443333 3456678899987
Q ss_pred HHHhhcc
Q 000134 1202 MDEYLSG 1208 (2096)
Q Consensus 1202 l~~~l~~ 1208 (2096)
-.+++..
T Consensus 93 A~~~~~~ 99 (477)
T 1wao_1 93 ALRDYET 99 (477)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=82.64 E-value=86 Score=37.45 Aligned_cols=121 Identities=15% Similarity=0.139 Sum_probs=91.6
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc----CC-----ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQAS----GA-----PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVV 1416 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~----~~-----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~ 1416 (2096)
...+..|...|.+....|.++.|.....+|... +. ..+...-+.++...|+..+|+..++++++-.+
T Consensus 140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---- 215 (383)
T 3ulq_A 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAE---- 215 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----
Confidence 456888999999999999999999999888654 21 12455667889999999999999999875211
Q ss_pred cccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----c-cchHHHH
Q 000134 1417 GSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVREL-----Q-PMWEKGY 1490 (2096)
Q Consensus 1417 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l-----~-~~weK~~ 1490 (2096)
...+....+.++.-+|.-....|+ .++.++.|++|+++ . +....++
T Consensus 216 --------------------------~~~~~~~~~~~~~~lg~~y~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~~~~ 267 (383)
T 3ulq_A 216 --------------------------AEKQPQLMGRTLYNIGLCKNSQSQ--YEDAIPYFKRAIAVFEESNILPSLPQAY 267 (383)
T ss_dssp --------------------------HTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred --------------------------HcCChHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence 001233557788888887766664 88999999999984 4 6666778
Q ss_pred HHHHhhhH
Q 000134 1491 FYMAKYCD 1498 (2096)
Q Consensus 1491 ~~la~y~d 1498 (2096)
+.+|..|-
T Consensus 268 ~~l~~~~~ 275 (383)
T 3ulq_A 268 FLITQIHY 275 (383)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=82.14 E-value=6.2 Score=52.52 Aligned_cols=112 Identities=10% Similarity=0.175 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhc-C--CChHHHHHHHHHHHcCC-chHHHHHHHHHhhcCCcccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQAS-G--APNVHMEKAKLLWSTRR-SDGAIAELQQNLLNKPVEVVGSTAIS 1422 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~-~--~~~~~iE~AKLLW~~g~-~~~Ai~~L~~~i~~~~~~~~~~~~~~ 1422 (2096)
.....|+.++++.|..|.++.|...+.+|.+. + .+.+.++.|.+.|..|. ...|-++++.+++..+.
T Consensus 432 ~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~--------- 502 (679)
T 4e6h_A 432 KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT--------- 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT---------
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC---------
Confidence 34668999999999999999999988888765 3 46788999999998765 79999999998874221
Q ss_pred cccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc---chHHHHHHHHhh
Q 000134 1423 SITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQP---MWEKGYFYMAKY 1496 (2096)
Q Consensus 1423 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~---~weK~~~~la~y 1496 (2096)
. ....+.|+++....| ..+.+...|..|++..+ +-...|-.|.+|
T Consensus 503 ------------------------~---~~~w~~y~~fe~~~~--~~~~AR~lferal~~~~~~~~~~~lw~~~~~f 550 (679)
T 4e6h_A 503 ------------------------D---GEYINKYLDFLIYVN--EESQVKSLFESSIDKISDSHLLKMIFQKVIFF 550 (679)
T ss_dssp ------------------------C---HHHHHHHHHHHHHHT--CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHH
T ss_pred ------------------------c---hHHHHHHHHHHHhCC--CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 0 223456666655554 47888999999999887 344556666554
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=81.78 E-value=2.1 Score=52.59 Aligned_cols=87 Identities=20% Similarity=0.194 Sum_probs=56.6
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHc----------------cCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQ----------------MEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKK 1183 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq----------------~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~ 1183 (2096)
....+.+.|+|++|..+|+++++ ..|.+......+-.|+..+|+|+..+.+.+..+...|+...
T Consensus 229 ~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~ 308 (370)
T 1ihg_A 229 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK 308 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHH
Confidence 34456677888888888888876 45555556667777788888888777777666555555433
Q ss_pred hHhHHHHHHHHhcCChhhHHHhhc
Q 000134 1184 TWCMQGVQAAWRLGRWDLMDEYLS 1207 (2096)
Q Consensus 1184 ~~~~~~vEAAWrlg~Wd~l~~~l~ 1207 (2096)
.+. ....+...+|+|+.-.+++.
T Consensus 309 a~~-~lg~~~~~~g~~~eA~~~l~ 331 (370)
T 1ihg_A 309 ALY-RRAQGWQGLKEYDQALADLK 331 (370)
T ss_dssp HHH-HHHHHHHHTTCHHHHHHHHH
T ss_pred HHH-HHHHHHHHccCHHHHHHHHH
Confidence 333 23445667777766555444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=81.67 E-value=6.3 Score=53.78 Aligned_cols=203 Identities=10% Similarity=0.139 Sum_probs=121.3
Q ss_pred HHHHhhhcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccc
Q 000134 6 SEILDLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKN 85 (2096)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (2096)
.+.|--.|.|+...++..|+++|-.+.+-+|-. ..+-..|..+..+.+++|++..+.+||++. +|.-..+...
T Consensus 474 ~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~--~ai~~LL~~~~e~~~e~vrR~aalgLGll~--~g~~e~~~~l--- 546 (963)
T 4ady_A 474 YEALKEVLYNDSATSGEAAALGMGLCMLGTGKP--EAIHDMFTYSQETQHGNITRGLAVGLALIN--YGRQELADDL--- 546 (963)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH--HHHHHHHHHHHHCSCHHHHHHHHHHHHHHT--TTCGGGGHHH---
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH--HHHHHHHHHHhccCcHHHHHHHHHHHHhhh--CCChHHHHHH---
Confidence 344444556666677878888887776655533 333344444445667889999999999883 3433111100
Q ss_pred ccccccccccccccccHHh-hhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccch
Q 000134 86 ACKLLLNVEDDILSQTVDY-LLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEV 164 (2096)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~-~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v 164 (2096)
.+++..+. +..+.+ ..--.-|+.|+.+-+.+ ++. ++..+.+..++.|
T Consensus 547 -i~~L~~~~----dp~vRygaa~alglAyaGTGn~~a--------------------------Iq~-LL~~~~~d~~d~V 594 (963)
T 4ady_A 547 -ITKMLASD----ESLLRYGGAFTIALAYAGTGNNSA--------------------------VKR-LLHVAVSDSNDDV 594 (963)
T ss_dssp -HHHHHHCS----CHHHHHHHHHHHHHHTTTSCCHHH--------------------------HHH-HHHHHHHCSCHHH
T ss_pred -HHHHHhCC----CHHHHHHHHHHHHHHhcCCCCHHH--------------------------HHH-HHHHhccCCcHHH
Confidence 01111111 011111 11122467777763222 555 4445556677889
Q ss_pred hhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHH
Q 000134 165 QLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDV 244 (2096)
Q Consensus 165 ~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (2096)
+-+.+.+|.-|+.-.. +. -.+.++.|+.+.+..||.+++-++..+ .++ ......++.
T Consensus 595 RraAViaLGlI~~g~~-e~-------v~rlv~~L~~~~d~~VR~gAalALGli----------~aG-----n~~~~aid~ 651 (963)
T 4ady_A 595 RRAAVIALGFVLLRDY-TT-------VPRIVQLLSKSHNAHVRCGTAFALGIA----------CAG-----KGLQSAIDV 651 (963)
T ss_dssp HHHHHHHHHHHTSSSC-SS-------HHHHTTTGGGCSCHHHHHHHHHHHHHH----------TSS-----SCCHHHHHH
T ss_pred HHHHHHHHHhhccCCH-HH-------HHHHHHHHHhcCCHHHHHHHHHHHHHh----------ccC-----CCcHHHHHH
Confidence 9999999998875543 21 234566677899999999999888762 111 123556666
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHhh
Q 000134 245 IKLAFTAADDPLILETLLESTAELMMA 271 (2096)
Q Consensus 245 ~~~~~~~~~d~~i~eTll~~~~~i~~~ 271 (2096)
+.. ++.-.|+.|....++++|.|+.+
T Consensus 652 L~~-L~~D~d~~Vrq~Ai~ALG~Ig~g 677 (963)
T 4ady_A 652 LDP-LTKDPVDFVRQAAMIALSMILIQ 677 (963)
T ss_dssp HHH-HHTCSSHHHHHHHHHHHHHHSTT
T ss_pred HHH-HccCCCHHHHHHHHHHHHHHhcC
Confidence 666 45556777999999999999643
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=81.55 E-value=3.1 Score=45.03 Aligned_cols=63 Identities=11% Similarity=0.165 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1469 KEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1469 ~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
.++.+..|++|++++|+...+||.+|.-|.++-.- .+...........|+.+|-+++...+++
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l-----------~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL-----------TPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-----------CCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc-----------CcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 67899999999999999999999999988654210 0000011123457999999999988764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=81.05 E-value=8.8 Score=46.38 Aligned_cols=156 Identities=10% Similarity=-0.013 Sum_probs=97.9
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHH-----hccCC---
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARL-----HKSLS--- 1116 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~-----~~~~s--- 1116 (2096)
..+.....-|.|..|+.+++.-........++ ......+..|..+|..+++++........ ....+
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDD------IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCH------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCCh------HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh
Confidence 35677788899999999999876543211110 00123467889999999999977665431 11111
Q ss_pred -----hhHHHHHhHhhcCHHHHHHHHHHHHccCC---Cc---hhhhhhHHHHHHhccChHHHHHHhhhhhc-----cChh
Q 000134 1117 -----LQDELLSNKKSGNWAEVFTSCEQALQMEP---TS---VQRHSDVLNCLLNMCHLQAMVTHVDGLIS-----RIPQ 1180 (2096)
Q Consensus 1117 -----l~~qil~~E~~G~W~~A~~~YE~~Lq~~p---~~---~~~~~glL~CL~~LGq~~~ll~~~~gl~~-----~~p~ 1180 (2096)
...-...|...|+|++|..+|+++++..+ +. .....++=.|+..+|+++..+.+.+.... ..|.
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 259 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence 11234567899999999999999987432 11 12334555678888999988777765444 3343
Q ss_pred hhhhHhHHHHHHHHhcCChhhHHHhhc
Q 000134 1181 YKKTWCMQGVQAAWRLGRWDLMDEYLS 1207 (2096)
Q Consensus 1181 ~~~~~~~~~vEAAWrlg~Wd~l~~~l~ 1207 (2096)
. ......-..+...+|+++.-.+++.
T Consensus 260 ~-~~~~~~la~~~~~~g~~~~A~~~~~ 285 (378)
T 3q15_A 260 L-PKVLFGLSWTLCKAGQTQKAFQFIE 285 (378)
T ss_dssp H-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3 2222233456677888877655543
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=80.85 E-value=11 Score=41.15 Aligned_cols=56 Identities=11% Similarity=0.083 Sum_probs=35.1
Q ss_pred HHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHh
Q 000134 150 NIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYF 217 (2096)
Q Consensus 150 ~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~ 217 (2096)
+.+.++|. ..+.+|+...+..|.++-.. + .+.-|..++.|++..||.++..++..+
T Consensus 48 ~~L~~~l~-~~~~~vr~~a~~~L~~~~~~---~--------~~~~L~~~l~d~~~~vr~~a~~aL~~~ 103 (201)
T 3ltj_A 48 EPLIKALK-DEDAWVRRAAADALGQIGDE---R--------AVEPLIKALKDEDGWVRQSAAVALGQI 103 (201)
T ss_dssp HHHHHHTT-CSSHHHHHHHHHHHHHHCCG---G--------GHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHHHhhCCH---H--------HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 44556664 44667888888888776321 1 112233345888888888888888774
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=80.74 E-value=4.6 Score=39.13 Aligned_cols=63 Identities=17% Similarity=0.010 Sum_probs=56.6
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
.....|...|.+..+.|+++.|...+.+|.... .+.+....|..+...|+..+|+..+++++.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 446789999999999999999999999998775 467888999999999999999999999875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 2096 | ||||
| d1e7ua4 | 369 | d.144.1.4 (A:726-1094) Phoshoinositide 3-kinase (P | 5e-57 |
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 2096 | |||
| d1e7ua4 | 369 | Phoshoinositide 3-kinase (PI3K), catalytic domain | 100.0 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 98.68 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 98.6 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.55 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.54 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.4 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 98.15 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 98.1 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 98.06 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 97.92 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 97.88 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.83 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.79 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 97.53 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 97.2 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 96.43 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 96.39 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 96.35 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 96.31 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 96.17 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 95.95 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 94.86 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 94.58 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 94.54 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 94.34 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 94.11 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 93.99 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 93.87 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 93.74 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 93.67 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 93.54 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 92.66 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 92.41 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 91.81 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 91.55 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 91.29 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 91.2 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 90.9 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 90.9 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 90.18 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 90.14 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 89.51 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 89.44 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 89.3 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 88.09 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 87.9 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 87.73 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 87.71 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 87.66 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 87.48 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 86.81 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 86.43 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 83.57 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 83.03 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 82.77 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 82.16 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 81.64 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 81.18 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 80.34 |
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.68 E-value=7.8e-05 Score=96.91 Aligned_cols=580 Identities=12% Similarity=0.095 Sum_probs=282.9
Q ss_pred hhcccCccchhhHHHHHHHHHHccCCchhhhh-hhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhh----------hhh
Q 000134 155 FLYDESSEEVQLSCVRVIRRILVHGTRDVLLK-TRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQD----------TVL 223 (2096)
Q Consensus 155 ~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~-~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~----------~~~ 223 (2096)
+.-+..+.+|+.+++..+..++.+...+.... .+..+.+.+...+.+++..+|.+++..+..+++. .++
T Consensus 188 ~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l 267 (861)
T d2bpta1 188 AQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQAL 267 (861)
T ss_dssp HSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTH
T ss_pred HhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457778888888888888887766442211 2233445555566888888888888777666421 111
Q ss_pred hhh----ccCcccccchhhHHHHH------------------------------------HHHHHhhhc------CChhH
Q 000134 224 SSL----FLDENASSRSNELKLLD------------------------------------VIKLAFTAA------DDPLI 257 (2096)
Q Consensus 224 ~~~----~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~------~d~~i 257 (2096)
..+ ..+.+...+..-..|+. .+...+... ++..+
T Consensus 268 ~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~ 347 (861)
T d2bpta1 268 YALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNV 347 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHH
T ss_pred HHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHH
Confidence 111 11111111110011111 111111111 12234
Q ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhhhhhHHHHH
Q 000134 258 LETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICNELFDYLSV 337 (2096)
Q Consensus 258 ~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 337 (2096)
......++..++... +++++...+-.+-..+.+++...+-.|...+..++...... ...+ .-+.+.+.+..
T Consensus 348 ~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~---~~~~----~l~~~l~~l~~ 418 (861)
T d2bpta1 348 SMSAGACLQLFAQNC--GNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKV---QRTY----YVHQALPSILN 418 (861)
T ss_dssp HHHHHHHHHHHHHHH--GGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH---HHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc--chhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchh---hHHH----HHHHHHHHHHH
Confidence 444455555553333 56777766767778888899899989888887775433221 0111 12445566666
Q ss_pred HhcCchHHHHHHHHHHhCCChHHHHHhhc---------ccccchhhhccccChh----HHHHHHHHHHHcCCCchhHHhh
Q 000134 338 RLASRPIMVREFAEAAFGVETEELVKKMI---------PAVLPKLVVSQQDNDQ----AVNIINELAKCLNTDMVPLIVT 404 (2096)
Q Consensus 338 ~l~~rp~~~~~~~e~llg~~~~~fL~~~~---------~~~LP~LVl~~~~~~~----~~~~i~~ia~~~~~~~~~l~~~ 404 (2096)
.+...-..++..|...+| .+..... +.+++.|+.....+.. +...+..++..........+..
T Consensus 419 ~l~d~~~~vr~~a~~~l~----~l~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 494 (861)
T d2bpta1 419 LMNDQSLQVKETTAWCIG----RIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYN 494 (861)
T ss_dssp GGGCSCHHHHHHHHHHHH----HHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGG
T ss_pred HhcCcchhhhhHHHHHHH----HHHHHhchhhhhHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhH
Confidence 655433334444432332 2222211 1122333322222211 1123344444444444333444
Q ss_pred hHHHHHHHHhc----ccc----HHHHHHHHHHHhhhcCCChHHHHHHhhHHHHHHHHHhhcCCCchhHhh---h----hc
Q 000134 405 WIPKVLAFALH----QAD----ERRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINE---R----LN 469 (2096)
Q Consensus 405 ~~~~Ila~ll~----~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~eLl~~~~~~~~~~~~~---~----~~ 469 (2096)
.+..++..++. ... ...+.+++..+...........+....+.+...|...+.......... . ..
T Consensus 495 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 574 (861)
T d2bpta1 495 FYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQS 574 (861)
T ss_dssp GHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 44444444442 111 123445555444444444444444444444433332222221111000 0 00
Q ss_pred chhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHh
Q 000134 470 RVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAI 549 (2096)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL 549 (2096)
.+...++.+.+. .++....|+. -++..+-..+...++...+..++.+++.+++.+|.....+.++|+-.|..++
T Consensus 575 ~~~~~l~~~~~~--~~~~~~~~~~----~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p~l~~~l 648 (861)
T d2bpta1 575 NILTVLAAVIRK--SPSSVEPVAD----MLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKAL 648 (861)
T ss_dssp HHHHHHHHHHHH--CGGGTGGGHH----HHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--chhhHHHHHH----HHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHh
Confidence 111122221111 1223333333 2222222222233344456789999999999999999999999999999998
Q ss_pred c--CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhccc
Q 000134 550 N--KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHE 627 (2096)
Q Consensus 550 ~--~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~ 627 (2096)
+ .+..+..++.++..+++.+. +++.+.+..++..++..+...... ...+..+...|..++..-+..+.
T Consensus 649 ~~~~~~v~~~a~~~l~~i~~~~~----~~~~~~~~~i~~~L~~~l~~~~~~-~~~k~~~~~~l~~i~~~~~~~~~----- 718 (861)
T d2bpta1 649 NQVDSPVSITAVGFIADISNSLE----EDFRRYSDAMMNVLAQMISNPNAR-RELKPAVLSVFGDIASNIGADFI----- 718 (861)
T ss_dssp HCTTSHHHHHHHHHHHHHHHHTG----GGGHHHHHHHHHHHHHHHHCTTCC-TTHHHHHHHHHHHHHHHHGGGGH-----
T ss_pred CCCCHHHHHHHHHHHHHHHHHhH----HHhHhhHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 6 34577888888888888764 578899999999998888643221 22355677777777655333222
Q ss_pred CCCCCChhhhHHHHHHHHHhcC-CC-CHHHHHHHHHhhccCCChhHHHHHHHHHHHHHh---hcHHHHHHHHhccCCCCc
Q 000134 628 FPLLPSIAALTEVNKAIQEARG-PM-TLKDQLLAAVDGLNHENLNVRYMVVCELSKLLK---LKSEDVTALINGEACSDL 702 (2096)
Q Consensus 628 lp~Lp~ip~l~~v~~~l~~~r~-~~-~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~---~~~~~l~~~~~~e~~~~~ 702 (2096)
|.+|.+ -..+...-. .. +.......+.. .||..++.-+...+. .+.+.+.
T Consensus 719 ----~~l~~~---~~~l~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~i~~~~~~~~~~~~----------- 773 (861)
T d2bpta1 719 ----PYLNDI---MALCVAAQNTKPENGTLEALDYQI-------KVLEAVLDAYVGIVAGLHDKPEALF----------- 773 (861)
T ss_dssp ----HHHHHH---HHHHHHHHTCCCSSSSHHHHHHHH-------HHHHHHHHHHHHHHHHTTTCHHHHG-----------
T ss_pred ----HHHHHH---HHHHHHHhCcCCCcccHHHHHHHH-------HHHHHHHHHHHHHHHHhcCCHHHHH-----------
Confidence 222332 222222111 11 11111112221 233333333333332 2222111
Q ss_pred hhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCccCcccccccccccccccccChhhHHHHHHHHHHHHHHcC-C
Q 000134 703 DVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAA-P 781 (2096)
Q Consensus 703 ~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~r~~~~~~~~~~~~~~~~~f~~~ll~~~Lv~af~s~-~ 781 (2096)
|.+..++.-+...+.+... ..++++...|..|||-+...=|+.. . ...-..+|+..++ -+++.+. .
T Consensus 774 p~~~~i~~~i~~~~~~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~-~-------~~~~~~~~~~~~l----~~~~~~~~~ 840 (861)
T d2bpta1 774 PYVGTIFQFIAQVAEDPQL-YSEDATSRAAVGLIGDIAAMFPDGS-I-------KQFYGQDWVIDYI----KRTRSGQLF 840 (861)
T ss_dssp GGHHHHHHHHHHHHHCHHH-HTSHHHHHHHHHHHHHHHHHCTTST-T-------GGGTTCHHHHHHH----HHHHHCSSS
T ss_pred HHHHHHHHHHHHHHhCCcc-CCCHHHHHHHHHHHHHHHHHCcchh-H-------HHHHhhHHHHHHH----HHHHhCcch
Confidence 3445454444333333221 1235788888888885542111100 0 0112235555544 3455554 4
Q ss_pred ChhhHhHHHHHHHHHHHHcC
Q 000134 782 DTIIQDSAALAIQELLKIAG 801 (2096)
Q Consensus 782 dt~~Q~~~A~AiQElLk~~~ 801 (2096)
+.+.++-+.||+.++-+..|
T Consensus 841 ~~~~~~~~~~~~~~~~~~~~ 860 (861)
T d2bpta1 841 SQATKDTARWAREQQKRQLS 860 (861)
T ss_dssp CHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHhC
Confidence 77788889999999888654
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=4.9e-06 Score=114.30 Aligned_cols=634 Identities=13% Similarity=0.113 Sum_probs=329.8
Q ss_pred hhhcccchhhhhhhhhhchhhhhhhcCccchHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCccccccccccccccc
Q 000134 10 DLALRDEFDEVRAEAVISLPVIVMWSGLGVLTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDKNACKL 89 (2096)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (2096)
=-+|.|.+.+||+.|+-.++.++-.-+...+..+.+.|-....++.++++..-...|+-+....+......
T Consensus 51 l~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~--------- 121 (1207)
T d1u6gc_ 51 LKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGS--------- 121 (1207)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----C---------
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccc---------
Confidence 34889999999999999999999887777777777777666666566666544444433322222110000
Q ss_pred ccccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccchhhHHH
Q 000134 90 LLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEVQLSCV 169 (2096)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~ 169 (2096)
.+..+ + ...+-..+...+.......|+..++
T Consensus 122 ---------------------------~~~~~------~----------------~~~l~~~l~~~~~~~~~~~v~~~al 152 (1207)
T d1u6gc_ 122 ---------------------------ALAAN------V----------------CKKITGRLTSAIAKQEDVSVQLEAL 152 (1207)
T ss_dssp ---------------------------CTHHH------H----------------HHHHHHHHHHHHSCCSCHHHHHHHH
T ss_pred ---------------------------hhHHH------H----------------HHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 00000 0 0112222333344455567888899
Q ss_pred HHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHh
Q 000134 170 RVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAF 249 (2096)
Q Consensus 170 ~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (2096)
.+|..++.+....+ .......++.+.-.+.|++..||.+++..++.++. .++ ..--..++..+-+.+
T Consensus 153 ~~l~~l~~~~g~~l-~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~------~~~------~~~~~~~~~~ll~~l 219 (1207)
T d1u6gc_ 153 DIMADMLSRQGGLL-VNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVM------SCG------NIVFVDLIEHLLSEL 219 (1207)
T ss_dssp HHHHHHHHHTCSSC-TTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTT------TC----------CTTHHHHHHHHH
T ss_pred HHHHHHHHHhhHhh-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH------HCC------HHHHHHHHHHHHHHH
Confidence 99999888766332 22223344544445699999999999999988651 111 111123555555556
Q ss_pred hhcCChhHHHHHHHHHHHHHhhhccc-chhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhh
Q 000134 250 TAADDPLILETLLESTAELMMAVDVH-SQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLIC 328 (2096)
Q Consensus 250 ~~~~d~~i~eTll~~~~~i~~~~~~~-~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~ 328 (2096)
....+..+..+.+.++|.+++..... +..+.-.+-.++..+...+.-+|-.|..-+..++..+... +.++.
T Consensus 220 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~----~~~~~---- 291 (1207)
T d1u6gc_ 220 SKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKE----VYPHV---- 291 (1207)
T ss_dssp HHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCC----CHHHH----
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhh----hhhhH----
Confidence 66666667778888888886543211 1112234455778889999999999998888887766432 22333
Q ss_pred hhhhHHHHHHhcCchHHHHHHHHHHhCCChHHHHHhhcccccchhhhcccc-C----hhHHHHHHHHHHHcCCCchhHHh
Q 000134 329 NELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQD-N----DQAVNIINELAKCLNTDMVPLIV 403 (2096)
Q Consensus 329 ~~l~~~~~~~l~~rp~~~~~~~e~llg~~~~~fL~~~~~~~LP~LVl~~~~-~----~~~~~~i~~ia~~~~~~~~~l~~ 403 (2096)
+++...+.+-+...|......+....+... ...........+........ . ..+.+.|..++...++...+++.
T Consensus 292 ~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~ 370 (1207)
T d1u6gc_ 292 STIINICLKYLTYDPNYNYDDEDEDENAMD-ADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK 370 (1207)
T ss_dssp HHHHHHHTTCCCCC-------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHT
T ss_pred HHHHHHHHHHHhcCcchhhhhHHHHHhhhh-hhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344555555555566554333221111111 01111111122222111000 0 01335566665544443333333
Q ss_pred hhHHHHHHHHhcccc--HHHHHHHHHHHhhhc---------------CCChHHHHHHhhHHHHHHHHHhhcCCCchhHhh
Q 000134 404 TWIPKVLAFALHQAD--ERRLLSALEFYCIQT---------------GSDNQEIFAAALPALLDELICFVDGGDSDEINE 466 (2096)
Q Consensus 404 ~~~~~Ila~ll~~~~--~~~~~~~l~~~~~~~---------------~~~~~~~~~~~~~~~l~eLl~~~~~~~~~~~~~ 466 (2096)
.-++.++..+-...+ +..+..++.-+...+ .......+...+|.++..+...+....... +
T Consensus 371 ~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~-r- 448 (1207)
T d1u6gc_ 371 TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKT-R- 448 (1207)
T ss_dssp TTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHH-H-
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhH-H-
Confidence 333333332211111 223344444333222 223334455566666655555444433221 1
Q ss_pred hhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhcc-ccccchhhHHHHH
Q 000134 467 RLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGS-HLTTYVPKILVLL 545 (2096)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~-~v~~~~pqI~a~L 545 (2096)
......+..+.... +..+.+|+..-+-+++..+.+. ..+...|..++..++.+++..++ .+.++.+.++..+
T Consensus 449 --~~~~~~l~~l~~~~--~~~l~~~l~~~~~~i~~~l~~~---~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~ 521 (1207)
T d1u6gc_ 449 --QCCFNMLTELVNVL--PGALTQHIPVLVPGIIFSLNDK---SSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPV 521 (1207)
T ss_dssp --HHHHHHHHHHHHHS--TTTTGGGHHHHHHHHHHHTTCS---SSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHH
T ss_pred --HHHHHHHHHHHHHc--chHHHHhhHhhHHHHHHHHhcc---cchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhH
Confidence 11233344433332 3446677766666666666532 23455677888889888887766 3556667777777
Q ss_pred HHHhcCC--CcchhhhHHHHHHHHHhccC---CCcchhhHHHHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHH
Q 000134 546 MHAINKE--SLQCEGLSVLHFFIEQLSRV---SPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAI 620 (2096)
Q Consensus 546 ~~aL~~~--~L~~~~l~~W~~fv~~L~~~---~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~ 620 (2096)
..++..+ ..+..++.++..++..+... ...+..+.+..++..+++.+...... ...+..+...+..++....+.
T Consensus 522 ~~~~~~~~~~i~~~al~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~-~e~~~~al~~l~~l~~~~~~~ 600 (1207)
T d1u6gc_ 522 VACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADID-QEVKERAISCMGQIICNLGDN 600 (1207)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSC-HHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHhhhhccchhhhhHHHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHhhhh
Confidence 7777543 35667778888888876532 12356678888888888877644322 234667777777776654332
Q ss_pred HHhhcccC-CC----C-CChhhhHHHHHHHHHh--cCCCC----HHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHH
Q 000134 621 LKQHIHEF-PL----L-PSIAALTEVNKAIQEA--RGPMT----LKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSE 688 (2096)
Q Consensus 621 L~~~i~~l-p~----L-p~ip~l~~v~~~l~~~--r~~~~----l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~ 688 (2096)
+..++..+ +. + .+......+.....-. ....+ +.+.+..+...+..++..+|..++.-|..++....+
T Consensus 601 ~~~~~~~~l~~l~~~l~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~ 680 (1207)
T d1u6gc_ 601 LGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSD 680 (1207)
T ss_dssp CCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhccc
Confidence 22111110 00 0 0000011111111111 11122 234456667777888888888888888776644321
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCccCccccc
Q 000134 689 DVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVK 748 (2096)
Q Consensus 689 ~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~r~~ 748 (2096)
. .....+..++..|.....+. +..++..+..+|+.+...-|+.+.
T Consensus 681 ~----------~~~~~~~~~l~~l~~ll~~~-----d~~v~~~~l~~l~~l~~~~~~~~~ 725 (1207)
T d1u6gc_ 681 S----------LTAAMIDAVLDELPPLISES-----DMHVSQMAISFLTTLAKVYPSSLS 725 (1207)
T ss_dssp T----------CCHHHHHHHHTTCGGGSCTT-----CHHHHHHHHHHHHHHTTSCGGGGG
T ss_pred c----------chhHHHhhHHHhhccccccc-----cHHHHHHHHHHHHHHHhhcchhhh
Confidence 1 11123444444444433332 347888899999999877776554
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=3e-05 Score=90.26 Aligned_cols=115 Identities=12% Similarity=0.153 Sum_probs=89.1
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccc
Q 000134 1347 EVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSI 1424 (2096)
Q Consensus 1347 ~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~ 1424 (2096)
.....|...+.+..+.|.++.|...+..+....+ +......+.++...|+..+|+..++++++..|
T Consensus 269 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p------------ 336 (388)
T d1w3ba_ 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP------------ 336 (388)
T ss_dssp SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT------------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCC------------
Confidence 4467788888888899999999888888776643 35667778888888999999998888765211
Q ss_pred cccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHH
Q 000134 1425 TSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDD 1499 (2096)
Q Consensus 1425 ~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~ 1499 (2096)
..+.++..+|......|+ .++.++.|++|++++|+...+|+.+|.-|.+
T Consensus 337 ------------------------~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~ 385 (388)
T d1w3ba_ 337 ------------------------EFAAAHSNLASVLQQQGK--LQEALMHYKEAIRISPTFADAYSNMGNTLKE 385 (388)
T ss_dssp ------------------------TCHHHHHHHHHHHHTTTC--CHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred ------------------------CCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 114567777777766665 6788899999999999999999999987754
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=0.00023 Score=89.51 Aligned_cols=555 Identities=16% Similarity=0.179 Sum_probs=287.5
Q ss_pred HHHHhhhcccchhhhhhhhhhchhhhhhhcCccc-hHHHHHHHhhhchhhhhhhhhhccchhhhhhhccCcccccccccc
Q 000134 6 SEILDLALRDEFDEVRAEAVISLPVIVMWSGLGV-LTNVFKRLESLGKDECEKVKRVFPISFGFLSCLSGTCSSIVDWDK 84 (2096)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (2096)
.+++--+|+|+...+|..|+-.++.+..--||.- ...+.+-|..+.+++ +.|+..++..||-+.=..|..
T Consensus 12 i~~l~~~l~~~~~~~R~~a~~~l~~ia~~lg~~~~~~~lip~l~~~~~~~-~ev~~~~~~~l~~~~~~~~~~-------- 82 (588)
T d1b3ua_ 12 IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDE-DEVLLALAEQLGTFTTLVGGP-------- 82 (588)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHHHHHTHHHHHHHTCCCC-HHHHHHHHHHHTTCSGGGTSG--------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHcCCh--------
Confidence 4566778999999999999999999999889853 234555555555553 456666666655321000100
Q ss_pred cccccccccccccccccHHhhhhcccccccCCcccccccccccccCCCcccccccccCCChhhHHHHHHHhhcccCccch
Q 000134 85 NACKLLLNVEDDILSQTVDYLLENFWCSKCDTNVVHNQELSSKIVNPSDVQSKDLNFHSDFSFLLNIYFEFLYDESSEEV 164 (2096)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v 164 (2096)
..++ .+-+.+..++ ...+..|
T Consensus 83 --------------------------------~~~~--------------------------~ll~~l~~l~-~~~~~~V 103 (588)
T d1b3ua_ 83 --------------------------------EYVH--------------------------CLLPPLESLA-TVEETVV 103 (588)
T ss_dssp --------------------------------GGGG--------------------------GGHHHHHHHT-TSSCHHH
T ss_pred --------------------------------hHHH--------------------------HHHHHHHHHc-cCCCHHH
Confidence 0011 1444444444 4446679
Q ss_pred hhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHH
Q 000134 165 QLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDV 244 (2096)
Q Consensus 165 ~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (2096)
+-+.+.+|..|..+.+.+..... +.-.+..|..++....|.+++.-++.+. .. .+......++..
T Consensus 104 r~~a~~~l~~i~~~~~~~~~~~~---l~p~i~~L~~~~~~~~r~~a~~ll~~~~---------~~---~~~~~~~~l~~~ 168 (588)
T d1b3ua_ 104 RDKAVESLRAISHEHSPSDLEAH---FVPLVKRLAGGDWFTSRTSACGLFSVCY---------PR---VSSAVKAELRQY 168 (588)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHT---HHHHHHHHHTCSSHHHHHHHGGGHHHHT---------TT---SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHH---HHHHHHHHhcccchHHHHHHHHHHHHHH---------HH---hhHHHHHHHHHH
Confidence 99999999999998876543232 3334556767777788999988777654 11 112222334444
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHH-HHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccch
Q 000134 245 IKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLIL-LVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSK 323 (2096)
Q Consensus 245 ~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~-Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~ 323 (2096)
+.+ +..-++|.|.++...+++.+.+ ..+.+.....++- |.+.+..++..||..|..-+..++..-.... .
T Consensus 169 ~~~-l~~D~~~~VR~~a~~~l~~~~~--~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~------~ 239 (588)
T d1b3ua_ 169 FRN-LCSDDTPMVRRAAASKLGEFAK--VLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED------L 239 (588)
T ss_dssp HHH-HHTCSCHHHHHHHHHHHHHHHH--TSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHH------H
T ss_pred HHH-HhccCCHHHHHHHHHHHHHHHH--HhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHH------H
Confidence 443 5556789999999999999954 3355554333333 5555678899999999999888865432110 0
Q ss_pred hhhhhhhhhHHHHHHhcCch-HHHHHHHHHHhCCChHHHHHhhcccccchhhhccccChhHHHHHHHHHHHcCCCchhHH
Q 000134 324 AVLICNELFDYLSVRLASRP-IMVREFAEAAFGVETEELVKKMIPAVLPKLVVSQQDNDQAVNIINELAKCLNTDMVPLI 402 (2096)
Q Consensus 324 ~~~~~~~l~~~~~~~l~~rp-~~~~~~~e~llg~~~~~fL~~~~~~~LP~LVl~~~~~~~~~~~i~~ia~~~~~~~~~l~ 402 (2096)
. ..+.+ +.+++...| ..++..+-..| .++. ...+.+ ..
T Consensus 240 ~----~~i~~-~l~~~~~D~~~~Vr~~~~~~l----~~l~-----------------------------~~~~~~---~~ 278 (588)
T d1b3ua_ 240 E----ALVMP-TLRQAAEDKSWRVRYMVADKF----TELQ-----------------------------KAVGPE---IT 278 (588)
T ss_dssp H----HHTHH-HHHHHHTCSSHHHHHHHHHTH----HHHH-----------------------------HHHCHH---HH
T ss_pred H----HHHHH-HHHHhcccccHHHHHHHHHhH----HHHH-----------------------------HHhhhh---hh
Confidence 0 11222 223333222 22333221111 1111 111100 00
Q ss_pred hhhHHHHHHHHhccccH---HHHHHHHHHHhhhcCCCh--HHHHHHhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHH
Q 000134 403 VTWIPKVLAFALHQADE---RRLLSALEFYCIQTGSDN--QEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRK 477 (2096)
Q Consensus 403 ~~~~~~Ila~ll~~~~~---~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~ 477 (2096)
...+-.++..++...++ .....+|..+....+.+. ...+...+|.+.. ...+.+... +. .+...+..
T Consensus 279 ~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~----~~~d~~~~v--r~--~~~~~l~~ 350 (588)
T d1b3ua_ 279 KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKE----LVSDANQHV--KS--ALASVIMG 350 (588)
T ss_dssp HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHH----HHTCSCHHH--HH--HHHTTGGG
T ss_pred hhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH----hhcCCChHH--HH--HHHHHHhh
Confidence 01111222223322222 233344433333222222 1123333333332 223322211 11 11112222
Q ss_pred HhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCC--Ccc
Q 000134 478 VSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKE--SLQ 555 (2096)
Q Consensus 478 ~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~--~L~ 555 (2096)
++..+ |.+...+.+.+.+...+ ..++...+..++.+++.+...+|. ....+.++-.+...++.+ ..|
T Consensus 351 ~~~~~-~~~~~~~~l~p~l~~~l--------~d~~~~v~~~~~~~l~~~~~~~~~--~~~~~~ll~~l~~~~~d~~~~~r 419 (588)
T d1b3ua_ 351 LSPIL-GKDNTIEHLLPLFLAQL--------KDECPEVRLNIISNLDCVNEVIGI--RQLSQSLLPAIVELAEDAKWRVR 419 (588)
T ss_dssp GHHHH-CHHHHHHHTHHHHHHHH--------TCSCHHHHHHHHTTCHHHHHHSCH--HHHHHHHHHHHHHHHTCSSHHHH
T ss_pred hhhcc-chhHHHHHHHHHHHHHH--------HhhhhhhhhHHHHHHHHHHhhcch--hhhhhHHHHHHHHHHhcccHHHH
Confidence 22111 11111222223332221 234566788889999988887764 233466777777777644 488
Q ss_pred hhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHH-----HHHhhcccCCC
Q 000134 556 CEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRA-----ILKQHIHEFPL 630 (2096)
Q Consensus 556 ~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~-----~L~~~i~~lp~ 630 (2096)
..++.++..+.+.+.. +.+.+.+... +..++. +.....+..|...+..|+...+. .+-..+..+..
T Consensus 420 ~~~~~~l~~l~~~~~~---~~~~~~l~~~---l~~~l~---D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~ 490 (588)
T d1b3ua_ 420 LAIIEYMPLLAGQLGV---EFFDEKLNSL---CMAWLV---DHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSG 490 (588)
T ss_dssp HHHHHHHHHHHHHHCG---GGCCHHHHHH---HHHGGG---CSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcCh---HhHHHHHHHH---HHhhcc---CCchhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhc
Confidence 8999999999988742 3343333333 333343 33345678888888888765422 11122222211
Q ss_pred CCChh----hhHHHHHHHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHH
Q 000134 631 LPSIA----ALTEVNKAIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLS 706 (2096)
Q Consensus 631 Lp~ip----~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~ 706 (2096)
=++.. .+.-+..............+-+..+.+.+.+..+.||..+++-|..+.......... +.+.
T Consensus 491 ~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~~~----------~~i~ 560 (588)
T d1b3ua_ 491 DPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ----------SEVK 560 (588)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHH----------HHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHhHH----------HHHH
Confidence 11110 011111111111111111234667788888888999999999988876543322110 1233
Q ss_pred HHHHHHHHHhhhhccccchhhHHHHHHHhhccc
Q 000134 707 TLISSLLRGCAEESRTVVGQKLKLVCADCLGAL 739 (2096)
Q Consensus 707 ~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~I 739 (2096)
.++..|++ + .+.+++..+.++|+.|
T Consensus 561 ~~l~~L~~---D-----~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 561 PILEKLTQ---D-----QDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHTT---C-----SSHHHHHHHHHHHHHT
T ss_pred HHHHHHcC---C-----CCHHHHHHHHHHHHHH
Confidence 44444421 2 3468999999999865
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=0.00017 Score=83.57 Aligned_cols=86 Identities=12% Similarity=0.049 Sum_probs=62.9
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd 1200 (2096)
...+-+.|+|++|..+|+++++..|++.+....+-.|+..+|+++..+...+......|+....+.. -..+...+|+|+
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~-l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSN-LGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHhhhhcccc
Confidence 3445678999999999999999999888888888888889999988888777666656654433332 335566788887
Q ss_pred hHHHhhc
Q 000134 1201 LMDEYLS 1207 (2096)
Q Consensus 1201 ~l~~~l~ 1207 (2096)
.-.++..
T Consensus 85 ~A~~~~~ 91 (388)
T d1w3ba_ 85 EAIEHYR 91 (388)
T ss_dssp HHHHHHH
T ss_pred ccccccc
Confidence 6655443
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=0.0094 Score=80.79 Aligned_cols=556 Identities=13% Similarity=0.172 Sum_probs=289.1
Q ss_pred hhhHHHHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhh
Q 000134 145 FSFLLNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLS 224 (2096)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~ 224 (2096)
..+.-+.++++| +..+.+||-+.+.+|.++..|.+.+.. .+-++.|-..+.+++..+|..++..++.++..-.-
T Consensus 43 ~~~i~~~ll~~L-~D~~~~Vq~~A~k~l~~l~~~~~~~~~----~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~- 116 (1207)
T d1u6gc_ 43 ERKVVKMILKLL-EDKNGEVQNLAVKCLGPLVSKVKEYQV----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPP- 116 (1207)
T ss_dssp HHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTSCHHHH----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHhCcHhhH----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhccc-
Confidence 445667788866 556789999999999999999885531 22334444445789999999999999886522110
Q ss_pred hhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcc-cchhHHHHHHHHHHhhCCCCcchHHHHHH
Q 000134 225 SLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDV-HSQHFLFLLILLVEQLDNPHVTVRMNASR 303 (2096)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~-~~e~~~~~l~~Li~~L~~~n~~v~~~A~~ 303 (2096)
...+..-...-...++.++..+....+++.++.-.+..++++...-.. =.......+-.|+..|.++++.||..|..
T Consensus 117 --~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~ 194 (1207)
T d1u6gc_ 117 --ASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTII 194 (1207)
T ss_dssp ------CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHH
T ss_pred --ccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 001111122223567788888888899999999888888887442210 01223445666999999999999999999
Q ss_pred HHHHHhhhhcccccccccchhhhhhhhhhHHHHHHhcC------ch---HHHHHHHHHHhCCChHHHHHhhcccccchhh
Q 000134 304 LIRKSCFFHLKGGCELLVSKAVLICNELFDYLSVRLAS------RP---IMVREFAEAAFGVETEELVKKMIPAVLPKLV 374 (2096)
Q Consensus 304 ~i~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~------rp---~~~~~~~e~llg~~~~~fL~~~~~~~LP~LV 374 (2096)
-|..++.+.....+ ..+...+++.+.. +- +.+..+|+ ..|... ....+.++|.++
T Consensus 195 ~l~~l~~~~~~~~~-----------~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~-~~~~~~----~~~l~~i~~~l~ 258 (1207)
T d1u6gc_ 195 ALGHLVMSCGNIVF-----------VDLIEHLLSELSKNDSMSTTRTYIQCIAAISR-QAGHRI----GEYLEKIIPLVV 258 (1207)
T ss_dssp HHHHHTTTC----C-----------TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHH-HSSGGG----TTSCTTHHHHHH
T ss_pred HHHHHHHHCCHHHH-----------HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH-Hcchhh----HHHHHHHHHHHH
Confidence 99999776644322 1223333333321 11 22333333 222221 222334455554
Q ss_pred hcccc-Chh----HHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhcc--ccH----------------------------
Q 000134 375 VSQQD-NDQ----AVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQ--ADE---------------------------- 419 (2096)
Q Consensus 375 l~~~~-~~~----~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~--~~~---------------------------- 419 (2096)
-.-+. +.. +...+..++........+ +++.|+..++.. .++
T Consensus 259 ~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~----~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (1207)
T d1u6gc_ 259 KFCNVDDDELREYCIQAFESFVRRCPKEVYP----HVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDD 334 (1207)
T ss_dssp HHHSSCCTTTHHHHHHHHHHHHHCTTCCCHH----HHHHHHHHHTTCCCCC-----------------------------
T ss_pred HHhcCccHHHHHHHHHHHHHHHHhChhhhhh----hHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHH
Confidence 32211 111 235566666655554433 344444444311 111
Q ss_pred -------------HHHHHHHHHHhhhcCCChHHHHHHhhHHHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccC--
Q 000134 420 -------------RRLLSALEFYCIQTGSDNQEIFAAALPALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTG-- 484 (2096)
Q Consensus 420 -------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 484 (2096)
.....+|.-+....+....+.+....| .|+-.+.+.+... + . .+..++..+.+....
T Consensus 335 ~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~----~L~~~l~d~~~~v--r-~-~~~~~l~~l~~~~~~~~ 406 (1207)
T d1u6gc_ 335 EYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSP----ALISRFKEREENV--K-A-DVFHAYLSLLKQTRPVQ 406 (1207)
T ss_dssp -------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHH----HHHSTTSCSSSHH--H-H-HHHHHHHHHHHHHCCC-
T ss_pred HHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHhcCCchHH--H-H-HHHHHHHHHHHhccchh
Confidence 011122221111111112222222222 2222333333221 1 1 122233222221111
Q ss_pred -----------CCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcCCC
Q 000134 485 -----------NEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINKES 553 (2096)
Q Consensus 485 -----------~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~~~ 553 (2096)
.......+.+++-.++..+...+ ...+...|..++..++.++...++.+..+.++++..+...+....
T Consensus 407 ~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l-~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~l~~~~ 485 (1207)
T d1u6gc_ 407 SWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQM-KEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKS 485 (1207)
T ss_dssp -----------CCCHHHHHHHHTTHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSS
T ss_pred hhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHHcchHHHHhhHhhHHHHHHHHhccc
Confidence 12233455666666666665443 345677888899999999999999999999999988888886432
Q ss_pred ----cchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCC
Q 000134 554 ----LQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFP 629 (2096)
Q Consensus 554 ----L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp 629 (2096)
++..++.+...++. ...++.+.+++..+...+...... .....+..+...+..++. .+....
T Consensus 486 ~~~~~~~~al~~l~~l~~---~~~~~~~~~~~~~l~~~~~~~~~~---~~~~i~~~al~~~~~l~~--------~l~~~~ 551 (1207)
T d1u6gc_ 486 SSSNLKIDALSCLYVILC---NHSPQVFHPHVQALVPPVVACVGD---PFYKITSEALLVTQQLVK--------VIRPLD 551 (1207)
T ss_dssp SCHHHHHHHHHHHHHHHH---SSCGGGGHHHHTTTHHHHHHHHTC---SSHHHHHHHHHHHHHHHH--------HHCCSS
T ss_pred chhHHHHHHHHHHHHHHH---hccHHHHHHHHHhhhhhHHHHHcc---ccHHHHHHHHHHHHHHHH--------Hhhhhc
Confidence 23344444333333 334566777777776666665542 112234445555554432 222211
Q ss_pred C--C-CChhhhHHHHHHHHHhcCCCCHHHHHHHHHhhcc--CCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchh
Q 000134 630 L--L-PSIAALTEVNKAIQEARGPMTLKDQLLAAVDGLN--HENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDV 704 (2096)
Q Consensus 630 ~--L-p~ip~l~~v~~~l~~~r~~~~l~~~l~~~~~~l~--~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~v 704 (2096)
. . ...|.+.+ .+.....++. +....|+..++.-+..++... |+... +.
T Consensus 552 ~~~~~~~~~~~~~----------------l~~~~~~~l~~~~~~~e~~~~al~~l~~l~~~~---------~~~~~--~~ 604 (1207)
T d1u6gc_ 552 QPSSFDATPYIKD----------------LFTCTIKRLKAADIDQEVKERAISCMGQIICNL---------GDNLG--SD 604 (1207)
T ss_dssp SCCCCCCHHHHHH----------------HHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHT---------GGGCC--TH
T ss_pred cchhhhhHHHHHH----------------HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh---------hhhhH--HH
Confidence 1 1 11122221 1222333332 445677888877776654332 22121 34
Q ss_pred HHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccCccCcccccccccccccccccChhhHHHHHHHHHHHHHHcCCChh
Q 000134 705 LSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALGAVDPAKVKGFSCQRFKIECSDDDLIFELIDKHLARAFRAAPDTI 784 (2096)
Q Consensus 705 i~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IGalDp~r~~~~~~~~~~~~~~~~~f~~~ll~~~Lv~af~s~~dt~ 784 (2096)
+..++..+++.... +..+..+.+.++.+..... +.. ....+..++. .| ..+...+|..
T Consensus 605 ~~~~l~~l~~~l~~-------~~~r~~a~~~l~~i~~~~~-~~~------------~~~~l~~~~~-~l-~~~l~~~~~~ 662 (1207)
T d1u6gc_ 605 LPNTLQIFLERLKN-------EITRLTTVKALTLIAGSPL-KID------------LRPVLGEGVP-IL-ASFLRKNQRA 662 (1207)
T ss_dssp HHHHHHHHHHHTTS-------SSHHHHHHHHHHHHTTCSS-CCC------------CHHHHHHHHH-HH-HHHTTSCCHH
T ss_pred HHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHHhcc-chh------------HHHHHHHHHH-HH-HHhcccchHH
Confidence 55666666665433 2345566677776543211 111 1122333333 23 3455566776
Q ss_pred hHhHHHHHHHHHHHHc
Q 000134 785 IQDSAALAIQELLKIA 800 (2096)
Q Consensus 785 ~Q~~~A~AiQElLk~~ 800 (2096)
.......++..+++.+
T Consensus 663 ~r~~al~~L~~l~~~~ 678 (1207)
T d1u6gc_ 663 LKLGTLSALDILIKNY 678 (1207)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6666666777777764
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=0.00033 Score=92.94 Aligned_cols=419 Identities=12% Similarity=0.158 Sum_probs=212.1
Q ss_pred hhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHH
Q 000134 164 VQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLD 243 (2096)
Q Consensus 164 v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (2096)
++.+....|..+-.....++ +.. -+..+...+.+++-.+|+|+..+++++.+. ........-..++.
T Consensus 373 ~r~~a~~~L~~l~~~~~~~i-l~~---~l~~l~~~l~s~~~~~reaa~~alg~i~eg---------~~~~~~~~l~~li~ 439 (888)
T d1qbkb_ 373 LRKCSAAALDVLANVYRDEL-LPH---ILPLLKELLFHHEWVVKESGILVLGAIAEG---------CMQGMIPYLPELIP 439 (888)
T ss_dssp SHHHHHHHSTTTTTTCCSSS-HHH---HHHHHHHTTTSSSHHHHHHHHHHHHHHTTT---------SHHHHTTTHHHHHH
T ss_pred HHHHHHHHHhhHhhhhHHHH-HHH---HHHHHHHhhccchhHHHHHHHHHhhhhhhh---------HHHHhcccchhhhH
Confidence 45555555554444333332 222 223455566899999999999998886521 11111111234555
Q ss_pred HHHHHhhhcCChhHHHHHHHHHHHHHhhhcc--cchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhccccccccc
Q 000134 244 VIKLAFTAADDPLILETLLESTAELMMAVDV--HSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLV 321 (2096)
Q Consensus 244 ~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~--~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~ 321 (2096)
.+...+. -.+|.|+++.+.++|++...... ..+.+...+-.|+..+..+|+.|+..|..-|..++...... +.
T Consensus 440 ~l~~~l~-d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~----l~ 514 (888)
T d1qbkb_ 440 HLIQCLS-DKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE----LV 514 (888)
T ss_dssp HHHHHTT-SSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTS----SG
T ss_pred HHHHhcc-CCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhh----hh
Confidence 5555443 46788999999999998542211 12223345556889999999999999999999888765332 33
Q ss_pred chhhhhhhhhhHHHHHHhcCchHH--------HHHHHHHHhCCC--hHHHHHhhcccccchhhhccccChh---HHHHHH
Q 000134 322 SKAVLICNELFDYLSVRLASRPIM--------VREFAEAAFGVE--TEELVKKMIPAVLPKLVVSQQDNDQ---AVNIIN 388 (2096)
Q Consensus 322 ~~~~~~~~~l~~~~~~~l~~rp~~--------~~~~~e~llg~~--~~~fL~~~~~~~LP~LVl~~~~~~~---~~~~i~ 388 (2096)
++. +.+.+.+++-+...-.- +..+++ ..|-. ..+++....+..+...-.....+.. ..+.+.
T Consensus 515 p~~----~~il~~l~~~l~~~~~~~~~~~~~al~~l~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~ 589 (888)
T d1qbkb_ 515 PYL----AYILDTLVFAFSKYQHKNLLILYDAIGTLAD-SVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLS 589 (888)
T ss_dssp GGH----HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH-HHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHH
T ss_pred hHH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-hhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 444 33445555444322111 122222 22211 1334333322222211111111211 234566
Q ss_pred HHHHHcCCCchhHHhhhHHHHHHHHhcc----------------ccHHHHHHHHHH---HhhhcCCChHHHHHHhhHHHH
Q 000134 389 ELAKCLNTDMVPLIVTWIPKVLAFALHQ----------------ADERRLLSALEF---YCIQTGSDNQEIFAAALPALL 449 (2096)
Q Consensus 389 ~ia~~~~~~~~~l~~~~~~~Ila~ll~~----------------~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~l 449 (2096)
.++..++....+....-+..++..+... .+.+....++.. +....+.....++... .++
T Consensus 590 ~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~--~l~ 667 (888)
T d1qbkb_ 590 SVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARS--NIL 667 (888)
T ss_dssp HHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTS--CHH
T ss_pred HHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHh--hHH
Confidence 6667777776665544444443322210 011222222222 2222233333332211 011
Q ss_pred HHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHH
Q 000134 450 DELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEM 529 (2096)
Q Consensus 450 ~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l 529 (2096)
.-++..+.+.+.+. ++ .+...+..+++. ....+..|+.. ++..+-..+ +.+....+..++.++|+|..-
T Consensus 668 ~~l~~~l~~~~~~v-r~---~a~~llgdl~~~--~~~~~~~~l~~----~~~~l~~~L-~~~~~~v~~~a~~~ig~ia~~ 736 (888)
T d1qbkb_ 668 TLMYQCMQDKMPEV-RQ---SSFALLGDLTKA--CFQHVKPCIAD----FMPILGTNL-NPEFISVCNNATWAIGEISIQ 736 (888)
T ss_dssp HHHHHHHTCSSHHH-HH---HHHHHHHHHHHH--CGGGTGGGHHH----HHHHHHHTC-CGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCChHH-HH---HHHHHHHHHHHh--hhHHHHHHHHH----HHHHHHHHh-CcCCHHHHHHHHHHHHHHHHH
Confidence 11111222222221 11 111222222221 12333444433 333332222 333456778899999999999
Q ss_pred hccccccchhhHHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccccCCCCchhhHHHHHHH
Q 000134 530 IGSHLTTYVPKILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKI 609 (2096)
Q Consensus 530 ~g~~v~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~i 609 (2096)
+|..+.++.|+|+..|...|+.++........=...+-.|...+|+.+.|++++++..+...+..-.+.. .++.|..-
T Consensus 737 ~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l~~~~d~~--ek~~~~~g 814 (888)
T d1qbkb_ 737 MGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNE--EKDSAFRG 814 (888)
T ss_dssp TGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHHTTSCCSH--HHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHhccCCCcH--HHHHHHHH
Confidence 9999999999999999999987665433222222222333335678888888887766655554332222 24556666
Q ss_pred HHHHHHHhHHH
Q 000134 610 LEDLVLKNRAI 620 (2096)
Q Consensus 610 l~~Li~~n~~~ 620 (2096)
|-.+|..|...
T Consensus 815 ~~~~i~~~p~~ 825 (888)
T d1qbkb_ 815 ICTMISVNPSG 825 (888)
T ss_dssp HHHHHHHCGGG
T ss_pred HHHHHHHCcHH
Confidence 66677666543
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=0.0013 Score=82.38 Aligned_cols=498 Identities=13% Similarity=0.179 Sum_probs=238.2
Q ss_pred ccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchh
Q 000134 158 DESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSN 237 (2096)
Q Consensus 158 ~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (2096)
......+|...++.|+.|......+ +++.+.+-.|..++.+.+ .||.+++.+++.|... -++ ...
T Consensus 20 ~~~~~~~R~~a~~~l~~ia~~lg~~---~~~~~lip~l~~~~~~~~-ev~~~~~~~l~~~~~~-------~~~----~~~ 84 (588)
T d1b3ua_ 20 RNEDVQLRLNSIKKLSTIALALGVE---RTRSELLPFLTDTIYDED-EVLLALAEQLGTFTTL-------VGG----PEY 84 (588)
T ss_dssp TCSCHHHHHHHHHTHHHHHHHSCHH---HHHHTHHHHHHHTCCCCH-HHHHHHHHHHTTCSGG-------GTS----GGG
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCcH---hhHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHH-------cCC----hhH
Confidence 3456678999999999888776644 235556666666656655 6899999998886521 111 111
Q ss_pred hHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhC-CCCcchHHHHHHHHHHHhhhhcccc
Q 000134 238 ELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLD-NPHVTVRMNASRLIRKSCFFHLKGG 316 (2096)
Q Consensus 238 ~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~-~~n~~v~~~A~~~i~~l~~~~~~~~ 316 (2096)
...++.-+.. +...+|+.|++....+++.|+. ....+-+.-.++-++..|. ..+...|..|...+..++.+...
T Consensus 85 ~~~ll~~l~~-l~~~~~~~Vr~~a~~~l~~i~~--~~~~~~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~-- 159 (588)
T d1b3ua_ 85 VHCLLPPLES-LATVEETVVRDKAVESLRAISH--EHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS-- 159 (588)
T ss_dssp GGGGHHHHHH-HTTSSCHHHHHHHHHHHHHHHT--TSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH--
T ss_pred HHHHHHHHHH-HccCCCHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhH--
Confidence 2344444444 5567889999999999999954 3355555444555555554 45556788888777666443211
Q ss_pred cccccchhhhhhhhhhHHHHHHhcCchHHHHHHHHHHhC-----CChHHHHHhhcccccchhhhc-cccChh----HHHH
Q 000134 317 CELLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFG-----VETEELVKKMIPAVLPKLVVS-QQDNDQ----AVNI 386 (2096)
Q Consensus 317 ~~l~~~~~~~~~~~l~~~~~~~l~~rp~~~~~~~e~llg-----~~~~~fL~~~~~~~LP~LVl~-~~~~~~----~~~~ 386 (2096)
.....+.+.+.+-+...-.++|..|-..+| ++.+.. .+..+|.|.-. ...+.. +...
T Consensus 160 ---------~~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~----~~~l~~~l~~l~~d~~~~vr~~a~~~ 226 (588)
T d1b3ua_ 160 ---------AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNV----KSEIIPMFSNLASDEQDSVRLLAVEA 226 (588)
T ss_dssp ---------HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHH----HHTHHHHHHHHHTCSCHHHHTTHHHH
T ss_pred ---------HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHH----HHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 112344555554444333333333221111 122211 12344444332 111211 2344
Q ss_pred HHHHHHHcCCCchhHHhhhHHHHHHHHhcccc---HHHHHHHHHHHhhhcCCChHHHHH-HhhHHHHHHHHHhhcCCCch
Q 000134 387 INELAKCLNTDMVPLIVTWIPKVLAFALHQAD---ERRLLSALEFYCIQTGSDNQEIFA-AALPALLDELICFVDGGDSD 462 (2096)
Q Consensus 387 i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~---~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~eLl~~~~~~~~~ 462 (2096)
+..|+......- ....+..++..++...+ +..+..+|.-+....+. +... ..+|.+. ..+.+.+.+
T Consensus 227 l~~i~~~~~~~~---~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~----~ll~d~~~~ 296 (588)
T d1b3ua_ 227 CVNIAQLLPQED---LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQ----NLMKDCEAE 296 (588)
T ss_dssp HHHHHHHSCHHH---HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHH----HHHTCSSHH
T ss_pred HHHhhccCCHHH---HHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhh---hhhhhhhhHHHH----HHHhccchH
Confidence 555554333210 01111112222222111 22233344332222111 1111 1122222 233444332
Q ss_pred hHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHhccc--cccchhh
Q 000134 463 EINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMIGSH--LTTYVPK 540 (2096)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~g~~--v~~~~pq 540 (2096)
. +.. ...++..+...+ +........-+.++..+...- .......|..+..+++.+...+|.. +....|-
T Consensus 297 v--r~~--a~~~l~~~~~~l-~~~~~~~~~~~~i~~~l~~~~----~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~ 367 (588)
T d1b3ua_ 297 V--RAA--ASHKVKEFCENL-SADCRENVIMSQILPCIKELV----SDANQHVKSALASVIMGLSPILGKDNTIEHLLPL 367 (588)
T ss_dssp H--HHH--HHHHHHHHHHTS-CTTTHHHHHHHTHHHHHHHHH----TCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHH
T ss_pred H--HHH--HHHHHHHHHHHH-hhhhhhhhhHHHHHHHHHHhh----cCCChHHHHHHHHHHhhhhhccchhHHHHHHHHH
Confidence 2 111 223333333322 222223333344444433221 2334566777888888888888862 3334444
Q ss_pred HHHHHHHHhcCCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccccCCCCchhhHHHHHHHHHHHHHHhH--
Q 000134 541 ILVLLMHAINKESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVKILEDLVLKNR-- 618 (2096)
Q Consensus 541 I~a~L~~aL~~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~-- 618 (2096)
+...|+. +.++++..+++++..+...+. ...+...++..+...++. .....+..+...+..+.....
T Consensus 368 l~~~l~d--~~~~v~~~~~~~l~~~~~~~~------~~~~~~~ll~~l~~~~~d---~~~~~r~~~~~~l~~l~~~~~~~ 436 (588)
T d1b3ua_ 368 FLAQLKD--ECPEVRLNIISNLDCVNEVIG------IRQLSQSLLPAIVELAED---AKWRVRLAIIEYMPLLAGQLGVE 436 (588)
T ss_dssp HHHHHTC--SCHHHHHHHHTTCHHHHHHSC------HHHHHHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHh--hhhhhhhHHHHHHHHHHhhcc------hhhhhhHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHcChH
Confidence 4433321 234567777777777776642 122333344444444432 222356677777776643311
Q ss_pred ---HHHHhhcccCCCCCChhhhHHHHH--------HHHHhcCCCCHHHHHHHHHhhccCCChhHHHHHHHHHHHHHhhcH
Q 000134 619 ---AILKQHIHEFPLLPSIAALTEVNK--------AIQEARGPMTLKDQLLAAVDGLNHENLNVRYMVVCELSKLLKLKS 687 (2096)
Q Consensus 619 ---~~L~~~i~~lp~Lp~ip~l~~v~~--------~l~~~r~~~~l~~~l~~~~~~l~~en~~Vr~~aL~eL~~~L~~~~ 687 (2096)
+.+...+..+ +-+ + -..++. .++..........-+..+.+...+.+..+|..++.-+..+...-.
T Consensus 437 ~~~~~l~~~l~~~--l~D-~-~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~ 512 (588)
T d1b3ua_ 437 FFDEKLNSLCMAW--LVD-H-VYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 512 (588)
T ss_dssp GCCHHHHHHHHHG--GGC-S-SHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhh--ccC-C-chhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC
Confidence 1111111000 101 0 011211 111111111112234555666777777777777666665543221
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhcccC
Q 000134 688 EDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGALG 740 (2096)
Q Consensus 688 ~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~IG 740 (2096)
.+ .+...++..|+.++.+.. +.+|..++++||.||
T Consensus 513 ~~-------------~~~~~ilp~ll~~~~D~v-----~nVR~~a~~~l~~i~ 547 (588)
T d1b3ua_ 513 QD-------------ITTKHMLPTVLRMAGDPV-----ANVRFNVAKSLQKIG 547 (588)
T ss_dssp HH-------------HHHHHTHHHHHHGGGCSC-----HHHHHHHHHHHHHHG
T ss_pred hH-------------HHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHHH
Confidence 11 123456667777776533 579999999999996
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=0.0016 Score=86.04 Aligned_cols=363 Identities=14% Similarity=0.140 Sum_probs=186.1
Q ss_pred HHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhc-ccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccc
Q 000134 240 KLLDVIKLAFTAADDPLILETLLESTAELMMAVD-VHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCE 318 (2096)
Q Consensus 240 ~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~-~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~ 318 (2096)
.++..+.+.+ ...|+.++|..+.++|.|+.+.. .-...+...+=.|+..|.++++.||..|..-|-++|........
T Consensus 395 ~~l~~l~~~l-~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~- 472 (888)
T d1qbkb_ 395 HILPLLKELL-FHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP- 472 (888)
T ss_dssp HHHHHHHHTT-TSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCH-
T ss_pred HHHHHHHHhh-ccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhh-
Confidence 3444554533 35678899999999999854321 11233444555689999999999999999998888775533211
Q ss_pred cccchhhhhhhhhhHHHHHHhcCchHHHHHHHHHHhCCChHHHHHhhcccccch-------hhhc-cccChh----HHHH
Q 000134 319 LLVSKAVLICNELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKMIPAVLPK-------LVVS-QQDNDQ----AVNI 386 (2096)
Q Consensus 319 l~~~~~~~~~~~l~~~~~~~l~~rp~~~~~~~e~llg~~~~~fL~~~~~~~LP~-------LVl~-~~~~~~----~~~~ 386 (2096)
..+ ...+.+.+.+.+...-..+++-|...| ..|.....+...|+ |+.. .+.+.. +...
T Consensus 473 --~~~----~~~~l~~ll~~l~d~~~~V~~~a~~al----~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~a 542 (888)
T d1qbkb_ 473 --DTY----LKPLMTELLKRILDSNKRVQEAACSAF----ATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDA 542 (888)
T ss_dssp --HHH----TTTHHHHHHHHHSSSCHHHHHHHHHHH----HHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred --hhh----hhhhHHHHHHHhcCCCHHHHHHHHHHH----HHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 111 134456677776653333333332222 33444333333333 2221 111111 1133
Q ss_pred HHHHHHHcCCCc-hhHHhhhHHHHHHHHhc---ccc--HHHHHHHHHHHhhhcCCChHHH----HHHhhHHHHHHH---H
Q 000134 387 INELAKCLNTDM-VPLIVTWIPKVLAFALH---QAD--ERRLLSALEFYCIQTGSDNQEI----FAAALPALLDEL---I 453 (2096)
Q Consensus 387 i~~ia~~~~~~~-~~l~~~~~~~Ila~ll~---~~~--~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~l~eL---l 453 (2096)
+..++...+... .+-+.+.+..++-..+. .++ ...+.+||..+....+...... +..++..+...+ +
T Consensus 543 l~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 622 (888)
T d1qbkb_ 543 IGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAM 622 (888)
T ss_dssp HHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 444444333222 11111111111111111 111 1235667766665555443322 222221111111 1
Q ss_pred HhhcCCCchh-H-hhhhcchhHHHHHHhhhccCCCChhhhhHH-HHHHHHHHhhhhhcCCCChHHHHHHHHHHHHHHHHh
Q 000134 454 CFVDGGDSDE-I-NERLNRVPRVIRKVSTVLTGNEDLPGFLRN-HFVGLLNSIDRKMLHAEDLSLQKQALKRIEILIEMI 530 (2096)
Q Consensus 454 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~-~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~li~l~ 530 (2096)
.....++..+ . ........+.+..+.+.+ ...+..|+.. .++.++ -..+ ...+...|..++..+|.+.+.+
T Consensus 623 ~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l--~~~~~~~~~~~~l~~~l---~~~l-~~~~~~vr~~a~~llgdl~~~~ 696 (888)
T d1qbkb_ 623 LNNAQPDQYEAPDKDFMIVALDLLSGLAEGL--GGNIEQLVARSNILTLM---YQCM-QDKMPEVRQSSFALLGDLTKAC 696 (888)
T ss_dssp HHHHCTTTSCCCCTHHHHHHHHHHHHHHHHH--TTTTHHHHHTSCHHHHH---HHHH-TCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHhcccccccchhHHHHHHHHHHHHHHHHHh--hhhhhhhhhHhhHHHHH---HHHh-CCCChHHHHHHHHHHHHHHHhh
Confidence 1111111000 0 000001112222222211 1223333321 122222 2222 3344667888999999999999
Q ss_pred ccccccchhhHHHHHHHHhcCCCcchhhhHHHHH--HHHHhccCCCcchhhHHHHHHHHhhhccccCCCCchhhHHHHHH
Q 000134 531 GSHLTTYVPKILVLLMHAINKESLQCEGLSVLHF--FIEQLSRVSPSSTKHVISQVFAALIPFLERDKDNPSVLLNKVVK 608 (2096)
Q Consensus 531 g~~v~~~~pqI~a~L~~aL~~~~L~~~~l~~W~~--fv~~L~~~~~~~l~~ll~~i~~~lip~~~~~~~~~~~~~~~~~~ 608 (2096)
++++.++.++|+..|...|..+...-..-.||.+ ++..+. +++.|.+..++..+++.++..+ .+...++-+..
T Consensus 697 ~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~----~~~~py~~~il~~L~~il~~~~-~~~~v~~n~~~ 771 (888)
T d1qbkb_ 697 FQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMG----IEMQPYIPMVLHQLVEIINRPN-TPKTLLENTAI 771 (888)
T ss_dssp GGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTG----GGGGGGSHHHHHHHHHHHTCTT-CCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHH----HHhhhhHHHHHHHHHHHHcCCC-ccHHHHHHHHH
Confidence 9999999999999999999755432222235554 666654 5799999999999999997543 23334566677
Q ss_pred HHHHHHHHhHHHHHhhc
Q 000134 609 ILEDLVLKNRAILKQHI 625 (2096)
Q Consensus 609 il~~Li~~n~~~L~~~i 625 (2096)
-+-.|...+.+.+..|+
T Consensus 772 ~lgrl~~~~p~~~~~~l 788 (888)
T d1qbkb_ 772 TIGRLGYVCPQEVAPML 788 (888)
T ss_dssp HHHHHHHHCHHHHGGGG
T ss_pred HHHHHHHHCHHHHHhhH
Confidence 77788888888776444
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.88 E-value=0.019 Score=73.74 Aligned_cols=392 Identities=14% Similarity=0.100 Sum_probs=197.7
Q ss_pred chhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhh----
Q 000134 163 EVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNE---- 238 (2096)
Q Consensus 163 ~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 238 (2096)
.++.++...|..+.......+. .. -...++..+.+.+-..|.++...+..+. . ..+....
T Consensus 346 ~~~~~~~~~l~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~a~~~l~~i~---------~---~~~~~~~~~~l 409 (861)
T d2bpta1 346 NVSMSAGACLQLFAQNCGNHIL-EP---VLEFVEQNITADNWRNREAAVMAFGSIM---------D---GPDKVQRTYYV 409 (861)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGH-HH---HHHHHHHHTTCSSHHHHHHHHHHHHHTS---------S---SSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchhhh-hh---hcchhhhhhhhHHHHHHHHHHHHHHHHH---------h---hcchhhHHHHH
Confidence 3556666666666665554432 22 2245566779999999999999888865 1 1112222
Q ss_pred HHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhc---ccchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhccc
Q 000134 239 LKLLDVIKLAFTAADDPLILETLLESTAELMMAVD---VHSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKG 315 (2096)
Q Consensus 239 ~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~---~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~ 315 (2096)
..++..+...+ .-.++.+.++.+-+++++..... ...+.+...+-.|+..+ ..++.+...|..-+..++......
T Consensus 410 ~~~l~~l~~~l-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~~~~~~~~~~~l~~~~~~~ 487 (861)
T d2bpta1 410 HQALPSILNLM-NDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGL-QDHPKVATNCSWTIINLVEQLAEA 487 (861)
T ss_dssp HHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHh-cCcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhcc-ccChHHHHHHHHHHHHHHHHhhhc
Confidence 33455555544 34678899999999999854321 12334444444455554 445777777766666666654443
Q ss_pred ccccccchhhhhhhhhhHHHHHHhc---CchHHHH----HHHHHHhCCC---hHHHHHhhcccccchhhhcccc-----C
Q 000134 316 GCELLVSKAVLICNELFDYLSVRLA---SRPIMVR----EFAEAAFGVE---TEELVKKMIPAVLPKLVVSQQD-----N 380 (2096)
Q Consensus 316 ~~~l~~~~~~~~~~~l~~~~~~~l~---~rp~~~~----~~~e~llg~~---~~~fL~~~~~~~LP~LVl~~~~-----~ 380 (2096)
..+....+. ..+...+..... ..+.... .+.. +.... ...++....+...+.|.-.-.. .
T Consensus 488 ~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~al~~-~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~ 562 (861)
T d2bpta1 488 TPSPIYNFY----PALVDGLIGAANRIDNEFNARASAFSALTT-MVEYATDTVAETSASISTFVMDKLGQTMSVDENQLT 562 (861)
T ss_dssp SSCGGGGGH----HHHHHHHHHHHTCSCCGGGHHHHHHHHHHH-HHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCC
T ss_pred ccchhhHHH----hhHHHHHHHHHhhhhhhHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 222222222 122222322221 1112111 1111 11111 1222222222222222111000 0
Q ss_pred hh-----------HHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhcccc---HHHHHHHHHHHhhhcCCChHHHHHHhhH
Q 000134 381 DQ-----------AVNIINELAKCLNTDMVPLIVTWIPKVLAFALHQAD---ERRLLSALEFYCIQTGSDNQEIFAAALP 446 (2096)
Q Consensus 381 ~~-----------~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 446 (2096)
.. ...++..+....+....+....-+..++..+-...+ ++.+..++..+....+.+....+...+|
T Consensus 563 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~~i~p 642 (861)
T d2bpta1 563 LEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSP 642 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Confidence 00 112233333333333333322222222221212221 3345555554444444343333443444
Q ss_pred HHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCC-CChHHHHHHHHHHHH
Q 000134 447 ALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHA-EDLSLQKQALKRIEI 525 (2096)
Q Consensus 447 ~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~-~~~~~k~~~l~sl~~ 525 (2096)
.++ ..+.+.+.+.. .. ....+..+.+. ++..+.++.-.+++.+-..+.++ .+...|..++.+||.
T Consensus 643 ~l~----~~l~~~~~~v~--~~--a~~~l~~i~~~------~~~~~~~~~~~i~~~L~~~l~~~~~~~~~k~~~~~~l~~ 708 (861)
T d2bpta1 643 YLL----KALNQVDSPVS--IT--AVGFIADISNS------LEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGD 708 (861)
T ss_dssp HHH----HHHHCTTSHHH--HH--HHHHHHHHHHH------TGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHH
T ss_pred HHH----HHhCCCCHHHH--HH--HHHHHHHHHHH------hHHHhHhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 333 33344333221 11 12222222221 22334444445554444333333 234578889999999
Q ss_pred HHHHhccccccchhhHHHHHHHHhcCC-------------CcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhcc
Q 000134 526 LIEMIGSHLTTYVPKILVLLMHAINKE-------------SLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFL 592 (2096)
Q Consensus 526 li~l~g~~v~~~~pqI~a~L~~aL~~~-------------~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~ 592 (2096)
++.-+|+...++.|+|+..+..++... +|++.++.+|..+++.+.+ .++.+.|+++.|+..+...+
T Consensus 709 i~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~~p~~~~i~~~i~~~~ 787 (861)
T d2bpta1 709 IASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHD-KPEALFPYVGTIFQFIAQVA 787 (861)
T ss_dssp HHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTT-CHHHHGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888521 3678888999999998864 35678888888876655444
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=0.12 Score=66.07 Aligned_cols=101 Identities=15% Similarity=0.249 Sum_probs=78.7
Q ss_pred ChHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHhcC---CCcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHh
Q 000134 512 DLSLQKQALKRIEILIEMIGSHLTTYVPKILVLLMHAINK---ESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAAL 588 (2096)
Q Consensus 512 ~~~~k~~~l~sl~~li~l~g~~v~~~~pqI~a~L~~aL~~---~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~l 588 (2096)
+...+..++.+++.+++.+|.....+.|+|+-.|..+|.. ++.+..++.+...+..... +.+.|.+.+++..+
T Consensus 621 ~~~~~~~~l~~l~~l~~~~~~~~~~~l~~ii~~l~~~l~~~~~~~v~~~a~~~l~~l~~~~~----~~~~~~~~~i~~~l 696 (876)
T d1qgra_ 621 SGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQ----SNIIPFCDEVMQLL 696 (876)
T ss_dssp CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHG----GGGHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhH----HhhhhhHHHHHHHH
Confidence 4456778999999999999999999999999999988853 3478888888888777753 57999999999999
Q ss_pred hhccccCCCCchhhHHHHHHHHHHHHHHh
Q 000134 589 IPFLERDKDNPSVLLNKVVKILEDLVLKN 617 (2096)
Q Consensus 589 ip~~~~~~~~~~~~~~~~~~il~~Li~~n 617 (2096)
++.++..... ...+..+...+..++..-
T Consensus 697 ~~~l~~~~~~-~~~k~~~~~~i~~i~~~~ 724 (876)
T d1qgra_ 697 LENLGNENVH-RSVKPQILSVFGDIALAI 724 (876)
T ss_dssp HHHHTCTTSC-GGGHHHHHHHHHHHHHHH
T ss_pred HHHhCCccCC-HHHHHHHHHHHHHHHHHH
Confidence 9999643222 234567777777776553
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=0.0014 Score=75.24 Aligned_cols=114 Identities=12% Similarity=0.087 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
+..|...+.+..+.|.++.|...+.++.... .+.+....|.++...|+..+|++.++++++..|
T Consensus 172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-------------- 237 (323)
T d1fcha_ 172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-------------- 237 (323)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------
T ss_pred cccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhh--------------
Confidence 5678899999999999999999999987764 456778889999999999999999999876211
Q ss_pred cCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l 1500 (2096)
..++++..+|......|+ .++.++.|.+|++++|+...+++..+.-+..+
T Consensus 238 ----------------------~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~ 287 (323)
T d1fcha_ 238 ----------------------GYIRSRYNLGISCINLGA--HREAVEHFLEALNMQRKSRGPRGEGGAMSENI 287 (323)
T ss_dssp ----------------------TCHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred ----------------------ccHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHhCCcChhhhhhhHHHHHHH
Confidence 114567777777776765 78899999999999998777776665555444
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.53 E-value=0.3 Score=62.32 Aligned_cols=319 Identities=13% Similarity=0.142 Sum_probs=161.8
Q ss_pred cCChhHHHHHHHHHHHHHhhhcc--cchhHHHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhcccccccccchhhhhhh
Q 000134 252 ADDPLILETLLESTAELMMAVDV--HSQHFLFLLILLVEQLDNPHVTVRMNASRLIRKSCFFHLKGGCELLVSKAVLICN 329 (2096)
Q Consensus 252 ~~d~~i~eTll~~~~~i~~~~~~--~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~~~~~~l~~~~~~~~~~ 329 (2096)
..+...++..+..++.++.+... -.+.....+-.++..|..+|+.||..|..-+-.+|+....... .... -.
T Consensus 377 ~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~---~~~~---~~ 450 (876)
T d1qgra_ 377 NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAI---NDVY---LA 450 (876)
T ss_dssp CSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTS---STTT---HH
T ss_pred cchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhh---hHHH---hh
Confidence 36677888888888887432211 1233334555688899999999999999999999887644211 1111 14
Q ss_pred hhhHHHHHHhcCchHHHHHHHHHHhCCChHHHHHhh---------------------cccccchhhhc---c-ccC----
Q 000134 330 ELFDYLSVRLASRPIMVREFAEAAFGVETEELVKKM---------------------IPAVLPKLVVS---Q-QDN---- 380 (2096)
Q Consensus 330 ~l~~~~~~~l~~rp~~~~~~~e~llg~~~~~fL~~~---------------------~~~~LP~LVl~---~-~~~---- 380 (2096)
.+.+.+...+-..|......|. .+. .+.... ...+++.|... . ..+
T Consensus 451 ~~~~~l~~~l~~~~~v~~~~~~-~l~----~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~ 525 (876)
T d1qgra_ 451 PLLQCLIEGLSAEPRVASNVCW-AFS----SLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLR 525 (876)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHH-HHH----HHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHH
T ss_pred hHHHHHHHHhcCCHHHHHHHHH-HHH----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccccHhHH
Confidence 4567777777777776555443 221 111110 01111111110 0 000
Q ss_pred hhHHHHHHHHHHHcCCCchhHHhhhHHHHHHHHhc---c-------ccHHHHHHHHHH----HhhhcCCChHHHHHHhhH
Q 000134 381 DQAVNIINELAKCLNTDMVPLIVTWIPKVLAFALH---Q-------ADERRLLSALEF----YCIQTGSDNQEIFAAALP 446 (2096)
Q Consensus 381 ~~~~~~i~~ia~~~~~~~~~l~~~~~~~Ila~ll~---~-------~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~ 446 (2096)
..+...+..+......+..+.+...++.++..+-. . ........+... +......-..+.+....+
T Consensus 526 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 605 (876)
T d1qgra_ 526 SSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISD 605 (876)
T ss_dssp HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHH
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHHHHHHHcchhhhhhhHH
Confidence 00122333333444444444444444444433221 0 001111111111 111111111222333333
Q ss_pred HHHHHHHHhhcCCCchhHhhhhcchhHHHHHHhhhccCCCChhhhhHHHHHHHHHHhhhhhcCCCChHHHHHHHHHHHHH
Q 000134 447 ALLDELICFVDGGDSDEINERLNRVPRVIRKVSTVLTGNEDLPGFLRNHFVGLLNSIDRKMLHAEDLSLQKQALKRIEIL 526 (2096)
Q Consensus 447 ~~l~eLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~LGil~~~~~~l~~~~~~~~k~~~l~sl~~l 526 (2096)
.++.-++-.+...+.+...+. .+..++..++..+ ++.+..|+.. ++. .+-..+.+..+.+.+..++..++.+
T Consensus 606 ~i~~~l~~~l~~~~~~~~~~~--~~l~~l~~l~~~~--~~~~~~~l~~-ii~---~l~~~l~~~~~~~v~~~a~~~l~~l 677 (876)
T d1qgra_ 606 VVMASLLRMFQSTAGSGGVQE--DALMAVSTLVEVL--GGEFLKYMEA-FKP---FLGIGLKNYAEYQVCLAAVGLVGDL 677 (876)
T ss_dssp HHHHHHHHHC-----CCHHHH--HHHHHHHHHHHHH--GGGGGGGHHH-HHH---HHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcchHH--HHHHHHHHHHHHc--chhhHHHHHH-HHH---HHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 344333222211111111111 1223333333221 2334444432 222 2222222233456778899999999
Q ss_pred HHHhccccccchhhHHHHHHHHhcCC----CcchhhhHHHHHHHHHhccCCCcchhhHHHHHHHHhhhccc
Q 000134 527 IEMIGSHLTTYVPKILVLLMHAINKE----SLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVFAALIPFLE 593 (2096)
Q Consensus 527 i~l~g~~v~~~~pqI~a~L~~aL~~~----~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~~~lip~~~ 593 (2096)
.+-+|.++.++.++|+..|-..|+.+ +++..++.|+..++..+. ++..+.+.+++..+.+...
T Consensus 678 ~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~k~~~~~~i~~i~~~~~----~~~~~yl~~~l~~l~~~~~ 744 (876)
T d1qgra_ 678 CRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIG----GEFKKYLEVVLNTLQQASQ 744 (876)
T ss_dssp HHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHG----GGGGGGHHHHHHHHHHHHT
T ss_pred HHHhHHhhhhhHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHh----HhhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999754 466788999999999885 3567777777777665443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.43 E-value=0.12 Score=58.34 Aligned_cols=62 Identities=11% Similarity=-0.050 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1348 VGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1348 ~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
....|...+.+..+.|+++.|.....+|.+.. .+.+....+.++...|+..+|+..++++++
T Consensus 205 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 205 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999999998764 456788899999999999999999999987
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.39 E-value=0.097 Score=61.43 Aligned_cols=62 Identities=13% Similarity=0.119 Sum_probs=49.2
Q ss_pred CCCChHHHHHHHHHHHHHHHHhcc-ccccchhhHHHHHHHHhc--CCCcchhhhHHHHHHHHHhc
Q 000134 509 HAEDLSLQKQALKRIEILIEMIGS-HLTTYVPKILVLLMHAIN--KESLQCEGLSVLHFFIEQLS 570 (2096)
Q Consensus 509 ~~~~~~~k~~~l~sl~~li~l~g~-~v~~~~pqI~a~L~~aL~--~~~L~~~~l~~W~~fv~~L~ 570 (2096)
++++...|.-++.+|+.+++.+++ .+..+.|+|+-.|..+++ .+.+|..|+.|-..+...+.
T Consensus 375 ~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~ 439 (458)
T d1ibrb_ 375 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 439 (458)
T ss_dssp TCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence 445566777789999999876654 678899999999999996 45688888888777887764
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.35 E-value=0.088 Score=61.99 Aligned_cols=108 Identities=7% Similarity=-0.019 Sum_probs=69.3
Q ss_pred HHHHHhhcccHHHHHHHHHHHhHhhh---hhhhhhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHh
Q 000134 194 CIEFLLLNKRKAIRDAFCTQIGYFLQ---DTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMM 270 (2096)
Q Consensus 194 ~~~~~~~~~~r~vR~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~ 270 (2096)
.|. .+.+++..++..|+..+..++. ++-.+.+. +..++..+-+.+...+++.++.....+++.+..
T Consensus 18 lv~-~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~----------~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~ 86 (434)
T d1q1sc_ 18 IVK-GINSNNLESQLQATQAARKLLSREKQPPIDNII----------RAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS 86 (434)
T ss_dssp HHH-HHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHH----------HTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHT
T ss_pred HHH-HHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHH----------HCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 444 3489999999999999987651 11000111 112344566666666778899988899998843
Q ss_pred hhcccch-hH-HHHHHHHHHhhCCCCcchHHHHHHHHHHHhhhh
Q 000134 271 AVDVHSQ-HF-LFLLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2096)
Q Consensus 271 ~~~~~~e-~~-~~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~ 312 (2096)
..+.... +. .-++-.|+..|.++++-++..|..-+.++|...
T Consensus 87 ~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~ 130 (434)
T d1q1sc_ 87 GTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 130 (434)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred CChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccc
Confidence 2211111 11 123556889999999999999999888886543
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.31 E-value=1.9 Score=51.80 Aligned_cols=114 Identities=11% Similarity=0.050 Sum_probs=80.8
Q ss_pred HHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhh
Q 000134 192 IKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMA 271 (2096)
Q Consensus 192 ~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~ 271 (2096)
+..|-.+|.+.|..||..++..+..+..+......+ .....++..+-+.+...+|+.+++....+++.+...
T Consensus 19 ip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~--------~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~ 90 (529)
T d1jdha_ 19 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAI--------MRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH 90 (529)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHH--------HTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHH--------HHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC
Confidence 346677789999999999999888864221110000 011346777778888889999999999999998543
Q ss_pred hcccchhHH-HHHHHHHHhhCCCCcchHHHHHHHHHHHhhhhc
Q 000134 272 VDVHSQHFL-FLLILLVEQLDNPHVTVRMNASRLIRKSCFFHL 313 (2096)
Q Consensus 272 ~~~~~e~~~-~~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~~ 313 (2096)
.+...+++. -++-.||..|.++++-++..|..-|.++|..+.
T Consensus 91 ~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~ 133 (529)
T d1jdha_ 91 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 133 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCT
T ss_pred chhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc
Confidence 333333332 235568999999999999999999999987653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=95.95 E-value=0.31 Score=54.06 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=52.1
Q ss_pred CchhHHHHHHHHHHHHHcCChHHHHHHHHHHhh----cCC----ChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1345 GAEVGNCWLQYAKLCRLAGHYETATRAILEAQA----SGA----PNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1345 ~~~~~~~WL~~AklARKag~~~~A~~all~a~~----~~~----~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
.......|...|.+....|.++.|...+.++.. .+. ..+.+-.|.+++..|+..+|+..++++++
T Consensus 247 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 247 NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345566788889999999999999988877643 232 23567789999999999999999999875
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=94.86 E-value=0.2 Score=54.33 Aligned_cols=86 Identities=20% Similarity=0.141 Sum_probs=63.3
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWD 1200 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd 1200 (2096)
...|...|+|++|..+|+++++..|++.....++=.|+..+|+++..+...+..+...|+....+..++ .+-+.+|+|+
T Consensus 44 G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg-~~~~~~g~~~ 122 (259)
T d1xnfa_ 44 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG-IALYYGGRDK 122 (259)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH-HHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHH-HHHHHHhhHH
Confidence 455778899999999999999999998888877778888999998887777766655565443333333 5567888887
Q ss_pred hHHHhhc
Q 000134 1201 LMDEYLS 1207 (2096)
Q Consensus 1201 ~l~~~l~ 1207 (2096)
.-.++..
T Consensus 123 ~A~~~~~ 129 (259)
T d1xnfa_ 123 LAQDDLL 129 (259)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.58 E-value=3.5 Score=47.26 Aligned_cols=201 Identities=9% Similarity=0.042 Sum_probs=98.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHhccccccchhh-HHHHHHHHhc--CCCcchhhhHHHHHHHHHhccCCCcchhhHHHHHH
Q 000134 509 HAEDLSLQKQALKRIEILIEMIGSHLTTYVPK-ILVLLMHAIN--KESLQCEGLSVLHFFIEQLSRVSPSSTKHVISQVF 585 (2096)
Q Consensus 509 ~~~~~~~k~~~l~sl~~li~l~g~~v~~~~pq-I~a~L~~aL~--~~~L~~~~l~~W~~fv~~L~~~~~~~l~~ll~~i~ 585 (2096)
..++...++.++.++..+++..+..+..+.++ +..++..++. .++++..++..|..+...-.. ..+. ..
T Consensus 226 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~-------~~~~-~~ 297 (458)
T d1ibrb_ 226 QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD-------LAIE-AS 297 (458)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH-------HHHH-HC
T ss_pred cCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH-------HHHh-hh
Confidence 44567788899999999999988766655433 3444455543 445667777777766543210 0000 00
Q ss_pred HHhhhccccCCCCchhhHHHHHHHHHHHHHHhHHHHHhhcccCCCCCChhh------hHHHHHHHHHhcCCCCHHHHHHH
Q 000134 586 AALIPFLERDKDNPSVLLNKVVKILEDLVLKNRAILKQHIHEFPLLPSIAA------LTEVNKAIQEARGPMTLKDQLLA 659 (2096)
Q Consensus 586 ~~lip~~~~~~~~~~~~~~~~~~il~~Li~~n~~~L~~~i~~lp~Lp~ip~------l~~v~~~l~~~r~~~~l~~~l~~ 659 (2096)
............ + ...+...++.++..-.. ...+....++... ..+.-..+....+..-+..-+..
T Consensus 298 ~~~~~~~~~~~~-~---~~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~ 369 (458)
T d1ibrb_ 298 EAAEQGRPPEHT-S---KFYAKGALQYLVPILTQ----TLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPF 369 (458)
T ss_dssp CTTCSSSCSSCC-C---CCHHHHHHHHHHHHHHH----HTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred hHHHhhhHHHHH-H---HHHHHHHHHHHhhhHHh----hhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhHHHHH
Confidence 000000000000 0 01122222222211111 1111111111111 11111112222232223334455
Q ss_pred HHhhccCCChhHHHHHHHHHHHHHhhcHHHHHHHHhccCCCCchhHHHHHHHHHHHhhhhccccchhhHHHHHHHhhccc
Q 000134 660 AVDGLNHENLNVRYMVVCELSKLLKLKSEDVTALINGEACSDLDVLSTLISSLLRGCAEESRTVVGQKLKLVCADCLGAL 739 (2096)
Q Consensus 660 ~~~~l~~en~~Vr~~aL~eL~~~L~~~~~~l~~~~~~e~~~~~~vi~~Lv~sLL~~c~~~~~t~~~~~I~~lca~CLG~I 739 (2096)
+.+.+++++..+|.-|+.-|..+... +.++.. .+.+.+++..|+.+..+. ++.+|..+..|||.|
T Consensus 370 i~~~l~s~~~~~r~aal~~l~~i~~~--------~~~~~~--~~~l~~i~~~l~~~l~d~-----~~~VR~~a~~~l~~i 434 (458)
T d1ibrb_ 370 IKEHIKNPDWRYRDAAVMAFGCILEG--------PEPSQL--KPLVIQAMPTLIELMKDP-----SVVVRDTAAWTVGRI 434 (458)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHTSSS--------SCTTTT--CTTTTTHHHHHHHGGGCS-----CHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHh--------cCHhHH--HHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHH
Confidence 66788899999998887766533211 001111 245667777777776553 258999999999987
Q ss_pred C
Q 000134 740 G 740 (2096)
Q Consensus 740 G 740 (2096)
.
T Consensus 435 ~ 435 (458)
T d1ibrb_ 435 C 435 (458)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.54 E-value=0.18 Score=48.81 Aligned_cols=106 Identities=10% Similarity=-0.017 Sum_probs=81.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCC
Q 000134 1352 WLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSL 1429 (2096)
Q Consensus 1352 WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~ 1429 (2096)
...-+..+-+.|+++.|.....+|....+ +.+....|..+...|+..+|+..++.+++-.|
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p----------------- 68 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP----------------- 68 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhcc-----------------
Confidence 45668888999999999999999877754 56778889999999999999999998876221
Q ss_pred CCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHh
Q 000134 1430 VPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAK 1495 (2096)
Q Consensus 1430 ~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~ 1495 (2096)
..++++..+|.-....|+ .++.++.|++|+++.|.-...+..+++
T Consensus 69 -------------------~~~~~~~~~g~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~l~~ 113 (117)
T d1elwa_ 69 -------------------DWGKGYSRKAAALEFLNR--FEEAKRTYEEGLKHEANNPQLKEGLQN 113 (117)
T ss_dssp -------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred -------------------chhhHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 113456666665555554 778899999999999988877777655
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.34 E-value=0.084 Score=51.38 Aligned_cols=91 Identities=13% Similarity=0.133 Sum_probs=69.7
Q ss_pred hhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhc
Q 000134 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2096)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrl 1196 (2096)
+.++.-.+-+.|+|++|..+|+.+++..|++.....++=.|+..+|+++..+...+......|.....+... ..+.-.+
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-g~~~~~~ 84 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRK-AAALEFL 84 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH-HHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHH-HHHHHHc
Confidence 345677788999999999999999999999998888888899999999988777766555556554444433 3466778
Q ss_pred CChhhHHHhhcc
Q 000134 1197 GRWDLMDEYLSG 1208 (2096)
Q Consensus 1197 g~Wd~l~~~l~~ 1208 (2096)
|+|+.-.+++..
T Consensus 85 ~~~~~A~~~~~~ 96 (117)
T d1elwa_ 85 NRFEEAKRTYEE 96 (117)
T ss_dssp TCHHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 888876555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.11 E-value=0.064 Score=56.23 Aligned_cols=90 Identities=13% Similarity=0.079 Sum_probs=72.6
Q ss_pred hhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhc
Q 000134 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2096)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrl 1196 (2096)
+.++.-.+-+.|+|++|..+|+++++..|++.....++=.|+.++|+|+..+.+.+..+.-.|+....|.. ...+-..+
T Consensus 7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~-lg~~~~~l 85 (201)
T d2c2la1 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF-LGQCQLEM 85 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHH-HHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHH-HHHHHHHC
Confidence 44566778899999999999999999999999998888899999999999988888777777766554443 45667788
Q ss_pred CChhhHHHhhc
Q 000134 1197 GRWDLMDEYLS 1207 (2096)
Q Consensus 1197 g~Wd~l~~~l~ 1207 (2096)
|+|+.-.+++.
T Consensus 86 ~~~~~A~~~~~ 96 (201)
T d2c2la1 86 ESYDEAIANLQ 96 (201)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99887655443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=93.99 E-value=0.15 Score=49.04 Aligned_cols=90 Identities=12% Similarity=0.199 Sum_probs=70.9
Q ss_pred HHHHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHH
Q 000134 1043 KVTLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELL 1122 (2096)
Q Consensus 1043 ~~lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil 1122 (2096)
.--++...++.|.|..|+.++|..+... | +.+++.... ..
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p-----------------------~~~~a~~~l------------g~ 58 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKE-----P-----------------------EREEAWRSL------------GL 58 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-----T-----------------------TCHHHHHHH------------HH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccc-----c-----------------------ccchhhhhh------------hh
Confidence 3456888999999999999999987753 2 112222222 23
Q ss_pred HhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhh
Q 000134 1123 SNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVD 1172 (2096)
Q Consensus 1123 ~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~ 1172 (2096)
.+.+.|+|++|..+|+++++..|++.+...++-.|+.+.|+++..+...+
T Consensus 59 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~l~ 108 (112)
T d1hxia_ 59 TQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLR 108 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHHHHHH
Confidence 46789999999999999999999999999999999999999988766554
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.87 E-value=1.9 Score=51.40 Aligned_cols=256 Identities=11% Similarity=0.041 Sum_probs=134.4
Q ss_pred cCccchhhHHHHHHHHHHccCCc---hhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh--hhhhhhhccCcccc
Q 000134 159 ESSEEVQLSCVRVIRRILVHGTR---DVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ--DTVLSSLFLDENAS 233 (2096)
Q Consensus 159 ~~~~~v~~~~~~~l~~il~h~~~---~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~--~~~~~~~~~~~~~~ 233 (2096)
....+.+...+..++++|..... +.+++. +---..++.+-.+.+..++..++..+..+.. ......+...
T Consensus 87 s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~-g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~---- 161 (503)
T d1wa5b_ 87 SDDMQEQLSATVKFRQILSREHRPPIDVVIQA-GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA---- 161 (503)
T ss_dssp CSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHT-TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT----
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCchHHHHHHC-CChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhC----
Confidence 34456778888899998843221 122221 1111233444346788999999998887541 1111111111
Q ss_pred cchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHH--HHHHHHHhhCCCCcchHHHHHHHHHHHhhh
Q 000134 234 SRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLF--LLILLVEQLDNPHVTVRMNASRLIRKSCFF 311 (2096)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~--~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~ 311 (2096)
.++..+.+.+ ...++.+++.++-+++.|........+.+.- .+-.|+..+.++++.+.-.|...+.++|..
T Consensus 162 ------g~i~~l~~lL-~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~ 234 (503)
T d1wa5b_ 162 ------DAVPLFIQLL-YTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 234 (503)
T ss_dssp ------TCHHHHHHHH-HHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred ------CChHHHHHHh-cCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcC
Confidence 1233344433 3467789999999999984322111222211 244578888999999998999999999875
Q ss_pred hcccccccccchhhhhhhhhhHHHHHHhcC-chHHHHHHHHH---HhCCChHHHHHhhcccccchhhhccccChh--HHH
Q 000134 312 HLKGGCELLVSKAVLICNELFDYLSVRLAS-RPIMVREFAEA---AFGVETEELVKKMIPAVLPKLVVSQQDNDQ--AVN 385 (2096)
Q Consensus 312 ~~~~~~~l~~~~~~~~~~~l~~~~~~~l~~-rp~~~~~~~e~---llg~~~~~fL~~~~~~~LP~LVl~~~~~~~--~~~ 385 (2096)
....+ .......+.+.+++-+.+ .|.+....|.. +..-+.+..-.....-++|.|+-.-+.+.. ...
T Consensus 235 ~~~~~-------~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~ 307 (503)
T d1wa5b_ 235 KKPQP-------DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTP 307 (503)
T ss_dssp SSSCC-------CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHH
T ss_pred Cccch-------HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhh
Confidence 42221 112224556777777654 34444433331 222233332333444567777654332222 123
Q ss_pred HHHHHHHHcCCC--chhHH-hhhHHHHHHHHhccccHHHHHHHHHHHhhhc
Q 000134 386 IINELAKCLNTD--MVPLI-VTWIPKVLAFALHQADERRLLSALEFYCIQT 433 (2096)
Q Consensus 386 ~i~~ia~~~~~~--~~~l~-~~~~~~Ila~ll~~~~~~~~~~~l~~~~~~~ 433 (2096)
.+..+......+ ....+ ...+..++..++....+.....++..+.+..
T Consensus 308 al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~ 358 (503)
T d1wa5b_ 308 ALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNIT 358 (503)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence 344444433222 33333 4466667777776665544444444444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=93.74 E-value=0.12 Score=49.93 Aligned_cols=80 Identities=11% Similarity=-0.035 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHH
Q 000134 1383 VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIH 1462 (2096)
Q Consensus 1383 ~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~ 1462 (2096)
..++.+..+.++|+..+|+..+++++...| ..+.++..+|.+..
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------------------------------------~~~~a~~~lg~~~~ 61 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEP------------------------------------EREEAWRSLGLTQA 61 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHST------------------------------------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhccccc------------------------------------ccchhhhhhhhhhh
Confidence 356789999999999999999999886322 12568888999887
Q ss_pred HhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000134 1463 YTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2096)
Q Consensus 1463 ~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l 1500 (2096)
..++ .++.+..|++|++++|....+|+.+|..|...
T Consensus 62 ~~~~--~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 62 ENEK--DGLAIIALNHARMLDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hhhh--HHHhhcccccccccccccccchHHHHHHHHHC
Confidence 7775 88999999999999999999999999998655
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.67 E-value=4.2 Score=48.29 Aligned_cols=103 Identities=6% Similarity=-0.017 Sum_probs=59.7
Q ss_pred hcccHHHHHHHHHHHhHhhh---hhhhhhhccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccc
Q 000134 200 LNKRKAIRDAFCTQIGYFLQ---DTVLSSLFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHS 276 (2096)
Q Consensus 200 ~~~~r~vR~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~ 276 (2096)
.+.+...+..+...+...+. ++-.+.++. ..++..+-+.+....|+.++...+-.++.|+...+...
T Consensus 86 ~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~----------~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~ 155 (503)
T d1wa5b_ 86 NSDDMQEQLSATVKFRQILSREHRPPIDVVIQ----------AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 155 (503)
T ss_dssp SCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHH----------TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCCchHHHHHH----------CCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 66777777776666666541 111111111 11344556666666778888888888888753222122
Q ss_pred hhHHH--HHHHHHHhhCCCCcchHHHHHHHHHHHhhhh
Q 000134 277 QHFLF--LLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2096)
Q Consensus 277 e~~~~--~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~ 312 (2096)
+.+.- ++-.|+..|.+++.-++..|..-+.++|...
T Consensus 156 ~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~ 193 (503)
T d1wa5b_ 156 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDS 193 (503)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhh
Confidence 22211 2344677777888888888888888876543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.54 E-value=0.17 Score=51.65 Aligned_cols=91 Identities=12% Similarity=0.111 Sum_probs=71.8
Q ss_pred hhHHHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhHhHHHHHHHHhc
Q 000134 1117 LQDELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRL 1196 (2096)
Q Consensus 1117 l~~qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrl 1196 (2096)
+.++...+-+.|+|++|..+|+++++..|++......+=.|+..+|+|+......+..+.-.|+...-|.. ...+.-.+
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~-~g~~~~~~ 91 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR-RAASNMAL 91 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHH-HHHHHHHc
Confidence 55667778899999999999999999999999999899999999999999888887766666665444433 33455678
Q ss_pred CChhhHHHhhcc
Q 000134 1197 GRWDLMDEYLSG 1208 (2096)
Q Consensus 1197 g~Wd~l~~~l~~ 1208 (2096)
|+|+.-.++...
T Consensus 92 g~~~eA~~~~~~ 103 (159)
T d1a17a_ 92 GKFRAALRDYET 103 (159)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 899876655443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=92.66 E-value=0.82 Score=49.14 Aligned_cols=116 Identities=15% Similarity=0.004 Sum_probs=88.6
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccccc
Q 000134 1344 LGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAI 1421 (2096)
Q Consensus 1344 ~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~ 1421 (2096)
.+.+.+..|...+.+-++.|+++.|.....+|..+. .+.+....|..+-..|+..+|+..++++++..|.
T Consensus 32 ~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------- 103 (259)
T d1xnfa_ 32 TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-------- 103 (259)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh--------
Confidence 345667889999999999999999999999998875 4567778899999999999999999998863221
Q ss_pred ccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhh
Q 000134 1422 SSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYC 1497 (2096)
Q Consensus 1422 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~ 1497 (2096)
.+.++.-+|.-....|+ .++.++.|.++++..|.-...+..++..+
T Consensus 104 ----------------------------~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 149 (259)
T d1xnfa_ 104 ----------------------------YNYAHLNRGIALYYGGR--DKLAQDDLLAFYQDDPNDPFRSLWLYLAE 149 (259)
T ss_dssp ----------------------------CTHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ----------------------------hhhhHHHHHHHHHHHhh--HHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 02245555655554554 67788999999999997666665555433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.41 E-value=0.16 Score=52.93 Aligned_cols=81 Identities=17% Similarity=0.143 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHH
Q 000134 1382 NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWI 1461 (2096)
Q Consensus 1382 ~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl 1461 (2096)
+...+....++++|+..+|+..+++++...|. .+.++..+|.-.
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~------------------------------------~~~~~~~lg~~y 48 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL------------------------------------VAVYYTNRALCY 48 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC------------------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------------------------------CHHHHHhHHHHH
Confidence 34568889999999999999999998863221 033455555555
Q ss_pred HHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000134 1462 HYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2096)
Q Consensus 1462 ~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l 1500 (2096)
...|+ .++++..|++|++++|++.++|+.+|.-|.++
T Consensus 49 ~~~~~--~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l 85 (201)
T d2c2la1 49 LKMQQ--PEQALADCRRALELDGQSVKAHFFLGQCQLEM 85 (201)
T ss_dssp HHTTC--HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred hhhhh--hhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 54554 67889999999999999999999999887543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=91.81 E-value=9.8 Score=41.11 Aligned_cols=108 Identities=15% Similarity=0.083 Sum_probs=80.5
Q ss_pred chhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--C----hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCccccccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGHYETATRAILEAQASGA--P----NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGST 1419 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~--~----~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~ 1419 (2096)
......|...+.+....|.++.|...+.++..... + .....-|..+...|+..+|+..+++++...
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------- 281 (366)
T d1hz4a_ 210 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENA-------- 281 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------
T ss_pred chHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------
Confidence 34566788899999999999999999888765532 1 234456889999999999999999887521
Q ss_pred ccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Q 000134 1420 AISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM 1485 (2096)
Q Consensus 1420 ~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~ 1485 (2096)
+.....+..++++..+|.-....|+ .++..+.|++|.++.+.
T Consensus 282 ----------------------~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~l~~Al~l~~~ 323 (366)
T d1hz4a_ 282 ----------------------RSLRLMSDLNRNLLLLNQLYWQAGR--KSDAQRVLLDALKLANR 323 (366)
T ss_dssp ----------------------HHTTCHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHH
T ss_pred ----------------------hhcccChHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHhhh
Confidence 0011234557788888888777775 77888899999887653
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.55 E-value=0.25 Score=54.70 Aligned_cols=143 Identities=11% Similarity=0.081 Sum_probs=98.0
Q ss_pred cCccchhhHHHHHHHHHHccCCch--hhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhh-hhhhhhccCcccccc
Q 000134 159 ESSEEVQLSCVRVIRRILVHGTRD--VLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQD-TVLSSLFLDENASSR 235 (2096)
Q Consensus 159 ~~~~~v~~~~~~~l~~il~h~~~~--~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 235 (2096)
..+++++-..+.+|..++. ...+ .+.+. +-+.-.|..++.+++..||..++..+..+.++ +.....+.
T Consensus 28 ~~~~~~~~~Al~~L~~L~~-~~d~a~~l~~~-gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~------- 98 (264)
T d1xqra1 28 AADQQEREGALELLADLCE-NMDNAADFCQL-SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVL------- 98 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHT-SHHHHHHHHHT-THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHH-------
T ss_pred CCCHHHHHHHHHHHHHHHc-CHHHHHHHHHc-CCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 4567778888999999883 3322 12222 33444556677899999999999999998743 22211111
Q ss_pred hhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHH--HHHHHHHhhCCCCcchHHHHHHHHHHHhhhh
Q 000134 236 SNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLF--LLILLVEQLDNPHVTVRMNASRLIRKSCFFH 312 (2096)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~--~l~~Li~~L~~~n~~v~~~A~~~i~~l~~~~ 312 (2096)
+...+..+-..+....++.+++..+-+++.+++..+...+.+.. .+-.|+..|.+++..++..|...|.+++...
T Consensus 99 --~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~ 175 (264)
T d1xqra1 99 --GLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH 175 (264)
T ss_dssp --HTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred --HcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhcc
Confidence 12245556666777788999999999999986544433444422 2555889999999999999999999987654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.29 E-value=0.39 Score=49.63 Aligned_cols=109 Identities=13% Similarity=0.177 Sum_probs=75.7
Q ss_pred HHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHhH
Q 000134 1046 LARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSNK 1125 (2096)
Q Consensus 1046 LA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~E 1125 (2096)
.+...++=+.|..|+.+++.-++-..... .........+..+...+ . ..-...|.
T Consensus 19 ~G~~~~~~~~~~~Ai~~y~~al~~~~~~~--------~~~~~~~~~~~~~~~~~-----~------------~nla~~y~ 73 (170)
T d1p5qa1 19 RGTVYFKEGKYKQALLQYKKIVSWLEYES--------SFSNEEAQKAQALRLAS-----H------------LNLAMCHL 73 (170)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTTTCC--------CCCSHHHHHHHHHHHHH-----H------------HHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhhcc--------ccchHHHhhhchhHHHH-----H------------HHHHHHHH
Confidence 46678888999999999998776432211 11112222222222110 0 01234578
Q ss_pred hhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccCh
Q 000134 1126 KSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2096)
Q Consensus 1126 ~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p 1179 (2096)
+.|+|++|..+|+.++...|++.....++-.|+..+|+|+..+...+....-.|
T Consensus 74 k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P 127 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 127 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred hhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 899999999999999999999999999999999999999988877766554444
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.20 E-value=7.9 Score=44.29 Aligned_cols=154 Identities=13% Similarity=0.074 Sum_probs=90.7
Q ss_pred HHHHHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhh-hhhhhh-h
Q 000134 149 LNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQ-DTVLSS-L 226 (2096)
Q Consensus 149 ~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~-~~~~~~-~ 226 (2096)
-+.+.++|-.....+||..+..+|..+..+.+.....=....-+..+-.+|.+++..+|+.+..++..+.. ++-... +
T Consensus 58 i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i 137 (434)
T d1q1sc_ 58 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137 (434)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHH
Confidence 35577788666677899888899999887766432110112233444556699999999999999887641 111111 1
Q ss_pred ccCcccccchhhHHHHHHHHHHhhhcCCh----hHHHHHHHHHHHHHhhhcccc--hhHHHHHHHHHHhhCCCCcchHHH
Q 000134 227 FLDENASSRSNELKLLDVIKLAFTAADDP----LILETLLESTAELMMAVDVHS--QHFLFLLILLVEQLDNPHVTVRMN 300 (2096)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----~i~eTll~~~~~i~~~~~~~~--e~~~~~l~~Li~~L~~~n~~v~~~ 300 (2096)
+. ...+..+-..+....+. ..+..+..++..++....... +...-.+-.|+..|.+.++-++..
T Consensus 138 ~~----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~ 207 (434)
T d1q1sc_ 138 IK----------HGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLAD 207 (434)
T ss_dssp HH----------TTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HH----------hhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhh
Confidence 11 12233444444433322 334445555555533222222 223334455778888999999999
Q ss_pred HHHHHHHHhhhh
Q 000134 301 ASRLIRKSCFFH 312 (2096)
Q Consensus 301 A~~~i~~l~~~~ 312 (2096)
|..-|.+++...
T Consensus 208 a~~~l~~l~~~~ 219 (434)
T d1q1sc_ 208 SCWAISYLTDGP 219 (434)
T ss_dssp HHHHHHHHTSSC
T ss_pred HHhhhcccchhh
Confidence 999998887554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.90 E-value=1.2 Score=44.96 Aligned_cols=110 Identities=12% Similarity=-0.005 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITS 1426 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~ 1426 (2096)
++...+-+..+=+.|.++.|.....+|.++.+ +.+..-.+.++...|+..+|+..++++++-.|
T Consensus 10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-------------- 75 (159)
T d1a17a_ 10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-------------- 75 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc--------------
Confidence 44556667777789999999999999888764 45677889999999999999999999876321
Q ss_pred cCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhh
Q 000134 1427 LSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKY 1496 (2096)
Q Consensus 1427 ~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y 1496 (2096)
..++++..+|.-....|+ .++.+..|++++++.|.-..++..+++-
T Consensus 76 ----------------------~~~~a~~~~g~~~~~~g~--~~eA~~~~~~a~~~~p~~~~~~~~l~~~ 121 (159)
T d1a17a_ 76 ----------------------KYIKGYYRRAASNMALGK--FRAALRDYETVVKVKPHDKDAKMKYQEC 121 (159)
T ss_dssp ----------------------TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred ----------------------cchHHHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 113456666665555554 6788889999999999877777666543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=90.90 E-value=0.74 Score=47.18 Aligned_cols=107 Identities=13% Similarity=0.240 Sum_probs=75.6
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhh----HHHHHHHHhcCCChHHHHHHHHHhccCChhHH
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDED----VSFLMEIYSFLDEPDGLSGLARLHKSLSLQDE 1120 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~----~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~q 1120 (2096)
-.+...++.|.|..|+.+++.-+.-....... ..+. -.....+|. ..
T Consensus 20 e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~--------~~~~~~~~~~~~~~~~~---------------------Nl 70 (168)
T d1kt1a1 20 EKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGL--------SEKESKASESFLLAAFL---------------------NL 70 (168)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC--------CHHHHHHHHHHHHHHHH---------------------HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcc--------chhhhhhcchhHHHHHH---------------------hH
Confidence 46788899999999999988766543221110 1111 111112221 13
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~ 1180 (2096)
...|.+.|+|.+|..+|+.+++..|++.......-.|+..+|+|+......+..+.-.|+
T Consensus 71 a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~ 130 (168)
T d1kt1a1 71 AMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 130 (168)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 455788999999999999999999999999988999999999999887777665555554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.18 E-value=0.62 Score=43.24 Aligned_cols=86 Identities=14% Similarity=0.098 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHH
Q 000134 1382 NVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWI 1461 (2096)
Q Consensus 1382 ~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl 1461 (2096)
+-..+-.+.+.++|+..+|+..++++++-.+. ++. .....+.++--+|.-.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~-------------------~~~----------~~~~~~~~l~~Lg~~~ 56 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDE-------------------GEI----------STIDKVSVLDYLSYAV 56 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-------------------TCC----------CSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhh-------------------hhc----------cCccHHHHHHHHhhHH
Confidence 44568889999999999999999999863221 000 0112356666677666
Q ss_pred HHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhH
Q 000134 1462 HYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCD 1498 (2096)
Q Consensus 1462 ~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d 1498 (2096)
...|+ .++.++.|++|++++|+...+++.++.|..
T Consensus 57 ~~~g~--~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~ 91 (95)
T d1tjca_ 57 YQQGD--LDKALLLTKKLLELDPEHQRANGNLKYFEY 91 (95)
T ss_dssp HHTTC--HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HhcCC--hHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 66665 788999999999999999999999977643
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.51 E-value=21 Score=42.09 Aligned_cols=151 Identities=9% Similarity=0.085 Sum_probs=95.6
Q ss_pred HHHHHHhhcccCccchhhHHHHHHHHHHccCCch-hhhhhhhHHHHHHHHHhhc-ccHHHHHHHHHHHhHhh-hhhhhhh
Q 000134 149 LNIYFEFLYDESSEEVQLSCVRVIRRILVHGTRD-VLLKTRSEWIKCIEFLLLN-KRKAIRDAFCTQIGYFL-QDTVLSS 225 (2096)
Q Consensus 149 ~~~~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~-~~~~~~~~w~~~~~~~~~~-~~r~vR~a~~~~~~~~~-~~~~~~~ 225 (2096)
=+.+.++|-++ +.+|+-....+|..+.+|.... ..+.. ..-+.++-.+|.+ .+..+|+.+..++..+- .......
T Consensus 19 ip~L~~lL~~~-~~~v~~~A~~~l~~l~~~~~~~~~~~~~-~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 96 (529)
T d1jdha_ 19 IPELTKLLNDE-DQVVVNKAAVMVHQLSKKEASRHAIMRS-PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLA 96 (529)
T ss_dssp HHHHHHHHTCS-CHHHHHHHHHHHHHHHTSHHHHHHHHTC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHhccHHHHHHHHh-hhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHH
Confidence 45577777554 5668877788888887764422 22221 2234455556554 56789999999998864 1222222
Q ss_pred hccCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhH--HHHHHHHHHhhCCCCcchHHHHHH
Q 000134 226 LFLDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHF--LFLLILLVEQLDNPHVTVRMNASR 303 (2096)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~--~~~l~~Li~~L~~~n~~v~~~A~~ 303 (2096)
+++.| .+..+-+.+ ...|+.+++-.+.+++.+....+...+.+ .-++-.|++.|.++++-++..|..
T Consensus 97 i~~~g----------~i~~Li~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~ 165 (529)
T d1jdha_ 97 IFKSG----------GIPALVKML-GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTD 165 (529)
T ss_dssp HHHTT----------HHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHH
T ss_pred HHHCC----------CHHHHHHHh-CCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHH
Confidence 22222 344455544 34778899999999999854333222222 124556999999999999999999
Q ss_pred HHHHHhhhh
Q 000134 304 LIRKSCFFH 312 (2096)
Q Consensus 304 ~i~~l~~~~ 312 (2096)
-+..+|...
T Consensus 166 ~L~~l~~~~ 174 (529)
T d1jdha_ 166 CLQILAYGN 174 (529)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHhhhh
Confidence 999887653
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.44 E-value=0.41 Score=46.96 Aligned_cols=57 Identities=9% Similarity=0.107 Sum_probs=48.8
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhc
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLIS 1176 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~ 1176 (2096)
.-..|-..|+|++|..||+++++..|++.....++=.|+..+|+|+..+...+-.+.
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 445567889999999999999999999999988999999999999988777665433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=89.30 E-value=1.2 Score=44.94 Aligned_cols=61 Identities=10% Similarity=0.112 Sum_probs=52.3
Q ss_pred HHHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChh
Q 000134 1120 ELLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQ 1180 (2096)
Q Consensus 1120 qil~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~ 1180 (2096)
....|.+.|+|++|+.+|+.++...|++......+-.|+..+|+|+..+...+..+.-.|+
T Consensus 73 la~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 133 (153)
T d2fbna1 73 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 133 (153)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3456889999999999999999999999999999999999999999888877765554453
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.09 E-value=1.5 Score=49.72 Aligned_cols=139 Identities=9% Similarity=0.035 Sum_probs=101.6
Q ss_pred CCchhHHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCC--hHHHHHHHHHHHcCC-chHHHHHHHHHhhcCCcccccccc
Q 000134 1344 LGAEVGNCWLQYAKLCRLAGHYETATRAILEAQASGAP--NVHMEKAKLLWSTRR-SDGAIAELQQNLLNKPVEVVGSTA 1420 (2096)
Q Consensus 1344 ~~~~~~~~WL~~AklARKag~~~~A~~all~a~~~~~~--~~~iE~AKLLW~~g~-~~~Ai~~L~~~i~~~~~~~~~~~~ 1420 (2096)
..++-.+.+-.++.+-++.++++.|.....+|..+++. .+..-.+.++.+.|. ..+|+..++.+++..|.
T Consensus 38 ~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~------- 110 (315)
T d2h6fa1 38 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK------- 110 (315)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-------
T ss_pred cCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-------
Confidence 35567778888899999999999999999999988765 466677888888775 68999999998763221
Q ss_pred cccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHH
Q 000134 1421 ISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDV 1500 (2096)
Q Consensus 1421 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l 1500 (2096)
.+.++..+|.-+...|+ .++.++.|.+|++++|+...+|+++|..+.++
T Consensus 111 -----------------------------~~~a~~~~~~~~~~l~~--~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~ 159 (315)
T d2h6fa1 111 -----------------------------NYQVWHHRRVLVEWLRD--PSQELEFIADILNQDAKNYHAWQHRQWVIQEF 159 (315)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHTC--CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred -----------------------------hhhHHHHHhHHHHhhcc--HHHHHHHHhhhhhhhhcchHHHHHHHHHHHHH
Confidence 13344444444444454 45678899999999999999999999877544
Q ss_pred HHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1501 LVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1501 ~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
= . ...++.+|-+++...+.+
T Consensus 160 ~---------~-------------~~~Al~~~~~al~~~p~n 179 (315)
T d2h6fa1 160 K---------L-------------WDNELQYVDQLLKEDVRN 179 (315)
T ss_dssp T---------C-------------CTTHHHHHHHHHHHCTTC
T ss_pred H---------h-------------hHHHHHHHHHHHHHCCcc
Confidence 1 0 013677787877776543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=87.90 E-value=0.73 Score=51.33 Aligned_cols=65 Identities=12% Similarity=0.123 Sum_probs=55.8
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccChhhhhhH
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYKKTW 1185 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~~~~ 1185 (2096)
.-.+-..|++++|...|+.+++..|++......+..+|...|+|+....+.+......|+....+
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~ 67 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 34566789999999999999999999999999999999999999999888887776677655443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.73 E-value=1.5 Score=49.00 Aligned_cols=110 Identities=15% Similarity=0.188 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcC--CChHHHHHHHHHHHc-CCchHHHHHHHHHhhcCCccccccccccccc
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASG--APNVHMEKAKLLWST-RRSDGAIAELQQNLLNKPVEVVGSTAISSIT 1425 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~--~~~~~iE~AKLLW~~-g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~ 1425 (2096)
...|+.++++.++.|.++.|...+.+|.... .+...+..|.+.|.. |+...|..+++.+++.+|.
T Consensus 134 ~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~------------ 201 (308)
T d2onda1 134 TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD------------ 201 (308)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh------------
Confidence 4579999999999999999999999987765 456888999988875 7788899999998763221
Q ss_pred ccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc----hHHHHHHHHhh
Q 000134 1426 SLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPM----WEKGYFYMAKY 1496 (2096)
Q Consensus 1426 ~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~----weK~~~~la~y 1496 (2096)
.....+.++++....| ..+.+...|.+|++..+. ...-|..|.+|
T Consensus 202 ------------------------~~~~w~~y~~~~~~~g--~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~f 250 (308)
T d2onda1 202 ------------------------IPEYVLAYIDYLSHLN--EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 250 (308)
T ss_dssp ------------------------CHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred ------------------------hHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 1335667777766544 578899999999997653 23456666665
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=87.71 E-value=2 Score=43.04 Aligned_cols=113 Identities=11% Similarity=-0.051 Sum_probs=72.4
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhC
Q 000134 1386 EKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTG 1465 (2096)
Q Consensus 1386 E~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~ 1465 (2096)
|.+.-+..+|+..+|+...++++...+.. +..... ......+...+.+++-+|.-....+
T Consensus 22 ~~G~~~f~~~~y~~A~~~Y~~al~~~~~~----------------~~~~~~----~~~~~~~~~~~~~~~Nla~~~~~l~ 81 (153)
T d2fbna1 22 EEGNEFFKKNEINEAIVKYKEALDFFIHT----------------EEWDDQ----ILLDKKKNIEISCNLNLATCYNKNK 81 (153)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTC----------------TTCCCH----HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcch----------------hhhhhH----HHHHhhhhHHHHHHhhHHHHHHHhc
Confidence 45566778899999999999988643211 000000 0000112223334444444444444
Q ss_pred CCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1466 QKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1466 ~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
..++.++.|.+|++++|.+.++||.+|.-|..+= -...|+.+|-+++...+.+
T Consensus 82 --~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg----------------------~~~~A~~~~~~al~l~P~n 134 (153)
T d2fbna1 82 --DYPKAIDHASKVLKIDKNNVKALYKLGVANMYFG----------------------FLEEAKENLYKAASLNPNN 134 (153)
T ss_dssp --CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT----------------------CHHHHHHHHHHHHHHSTTC
T ss_pred --ccchhhhhhhccccccchhhhhhHHhHHHHHHcC----------------------CHHHHHHHHHHHHHhCCCC
Confidence 3788999999999999999999999999875431 1236889999998887653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.66 E-value=1.8 Score=48.85 Aligned_cols=143 Identities=7% Similarity=-0.073 Sum_probs=102.9
Q ss_pred chhHHHHHHHHHHHHHcCC-hHHHHHHHHHHhhcCC--ChHHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccc
Q 000134 1346 AEVGNCWLQYAKLCRLAGH-YETATRAILEAQASGA--PNVHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAIS 1422 (2096)
Q Consensus 1346 ~~~~~~WL~~AklARKag~-~~~A~~all~a~~~~~--~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~ 1422 (2096)
++....|..-+.+..+.|. ++.|......|....+ ..+..-.+.++-..|+..+|+..++++++-.|.
T Consensus 74 P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~--------- 144 (315)
T d2h6fa1 74 AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK--------- 144 (315)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT---------
T ss_pred CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhc---------
Confidence 3456778888888888775 8999999998877754 457778889999999999999999998863221
Q ss_pred cccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHH
Q 000134 1423 SITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIHYTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLV 1502 (2096)
Q Consensus 1423 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~ 1502 (2096)
-..++.-+|.-+...+. .++.++.|.+|++++|....+|++.|.-+.+.-
T Consensus 145 ---------------------------n~~a~~~~~~~~~~~~~--~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~- 194 (315)
T d2h6fa1 145 ---------------------------NYHAWQHRQWVIQEFKL--WDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT- 194 (315)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHTC--CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT-
T ss_pred ---------------------------chHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcc-
Confidence 02344445544455554 456788999999999999999999887554321
Q ss_pred HHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1503 DARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1503 ~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
. . .+ ......++..|.+++...+.+
T Consensus 195 ----~------~--~~---~~~~~~ai~~~~~al~~~P~~ 219 (315)
T d2h6fa1 195 ----G------Y--ND---RAVLEREVQYTLEMIKLVPHN 219 (315)
T ss_dssp ----C------S--CS---HHHHHHHHHHHHHHHHHSTTC
T ss_pred ----c------c--ch---hhhhHHhHHHHHHHHHhCCCc
Confidence 0 0 00 013457899999999887764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.48 E-value=0.67 Score=42.98 Aligned_cols=75 Identities=11% Similarity=0.247 Sum_probs=53.2
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~ 1124 (2096)
.|+..+++-|.|..|+-++|+-++.......+ .. ...++|.. ....|
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~------~~------~~~~~l~~---------------------Lg~~~ 56 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEIS------TI------DKVSVLDY---------------------LSYAV 56 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC------SS------CHHHHHHH---------------------HHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhcc------Cc------cHHHHHHH---------------------HhhHH
Confidence 68999999999999999999987654322111 00 01122221 23347
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhh
Q 000134 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHS 1152 (2096)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~ 1152 (2096)
.+.|++++|..+|+++|+..|++.+.+.
T Consensus 57 ~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 57 YQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 7899999999999999999999876443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.81 E-value=6.5 Score=43.83 Aligned_cols=83 Identities=10% Similarity=-0.023 Sum_probs=48.0
Q ss_pred hHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccC--hHHHHHHhhhhhccChhhhhhHhHHHHHHHHhcCChhh
Q 000134 1124 NKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCH--LQAMVTHVDGLISRIPQYKKTWCMQGVQAAWRLGRWDL 1201 (2096)
Q Consensus 1124 ~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq--~~~ll~~~~gl~~~~p~~~~~~~~~~vEAAWrlg~Wd~ 1201 (2096)
+...|++.+|+.+|+.+++..|++...-...-.++..+|+ ++..+...+..+...|.....|......+.+..|.++.
T Consensus 83 ~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 83 EESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHH
Confidence 4567889999999999999999987654334444555554 66555544444333343222233333344445566654
Q ss_pred HHHhh
Q 000134 1202 MDEYL 1206 (2096)
Q Consensus 1202 l~~~l 1206 (2096)
--++.
T Consensus 163 Al~~~ 167 (334)
T d1dcea1 163 ELAFT 167 (334)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 43333
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.43 E-value=6.8 Score=40.53 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcCCChHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 000134 1349 GNCWLQYAKLCRLAGHYETATRAILEAQASGAPNVHMEKAKLLWSTRRSDGAIAELQQNLL 1409 (2096)
Q Consensus 1349 ~~~WL~~AklARKag~~~~A~~all~a~~~~~~~~~iE~AKLLW~~g~~~~Ai~~L~~~i~ 1409 (2096)
...|-+ +-.+...|.++.|.....++.. ..+.+..-.+.+++..|+..+|+..++++++
T Consensus 6 ~~l~~~-g~~~~~~~d~~~Al~~~~~i~~-~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ 64 (192)
T d1hh8a_ 6 ISLWNE-GVLAADKKDWKGALDAFSAVQD-PHSRICFNIGCMYTILKNMTEAEKAFTRSIN 64 (192)
T ss_dssp HHHHHH-HHHHHHTTCHHHHHHHHHTSSS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHCCCHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence 345644 6666666667776666554321 2234445566666777777777777766654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=83.57 E-value=1.1 Score=45.65 Aligned_cols=59 Identities=14% Similarity=0.246 Sum_probs=49.9
Q ss_pred HHHhHhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhhhhhccCh
Q 000134 1121 LLSNKKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVDGLISRIP 1179 (2096)
Q Consensus 1121 il~~E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p 1179 (2096)
...|.+.|+|++|...|+.+++..|++...+.++=.|+.++|+++..+...+..+...|
T Consensus 84 a~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p 142 (169)
T d1ihga1 84 GACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 142 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 45688999999999999999999999999999999999999999987776665444444
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.03 E-value=5.2 Score=43.49 Aligned_cols=149 Identities=11% Similarity=0.033 Sum_probs=96.7
Q ss_pred HHHhhcccCccchhhHHHHHHHHHHccCCch--hhhhhhhHHHHHHHHHh-hcccHHHHHHHHHHHhHhhhhh-hhhhhc
Q 000134 152 YFEFLYDESSEEVQLSCVRVIRRILVHGTRD--VLLKTRSEWIKCIEFLL-LNKRKAIRDAFCTQIGYFLQDT-VLSSLF 227 (2096)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~--~~~~~~~~w~~~~~~~~-~~~~r~vR~a~~~~~~~~~~~~-~~~~~~ 227 (2096)
+...++..++.+|+.....+|..+..|.... ..+. ...+..|-.++ .+++..+|..+..++..+..+. -....|
T Consensus 63 ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~--~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 140 (264)
T d1xqra1 63 LVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLG--LGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQF 140 (264)
T ss_dssp HHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHH--TTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHH
Confidence 3455566778899999999999999986532 1111 23444444455 4678899999999999976211 111111
Q ss_pred cCcccccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHH--HHHHHHHhhCCCCcchHHHHHHHH
Q 000134 228 LDENASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLF--LLILLVEQLDNPHVTVRMNASRLI 305 (2096)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~--~l~~Li~~L~~~n~~v~~~A~~~i 305 (2096)
. ....+..+-+.+. ..|+.+++-.+-.++.+........+.+.- ++-.|+..|.++++-++..|..-|
T Consensus 141 ~---------~~~gi~~L~~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL 210 (264)
T d1xqra1 141 L---------RLDGFSVLMRAMQ-QQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGAL 210 (264)
T ss_dssp H---------HTTHHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHH
T ss_pred H---------HhhhhhHHHHHHh-cCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHH
Confidence 0 1112344555443 467779998888888876543333333322 245578888999999999999999
Q ss_pred HHHhhhh
Q 000134 306 RKSCFFH 312 (2096)
Q Consensus 306 ~~l~~~~ 312 (2096)
.+++..+
T Consensus 211 ~~L~~~~ 217 (264)
T d1xqra1 211 CSLVTDF 217 (264)
T ss_dssp HHHHTTC
T ss_pred HHHHhcC
Confidence 9987544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.77 E-value=13 Score=40.67 Aligned_cols=192 Identities=8% Similarity=-0.066 Sum_probs=104.4
Q ss_pred HHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHH----Hh-ccCChhH--
Q 000134 1047 ARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLAR----LH-KSLSLQD-- 1119 (2096)
Q Consensus 1047 A~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~----~~-~~~sl~~-- 1119 (2096)
+..=..++.|.+|+.++++-+.-.....++.. .-..+..+..+|..++++|....... +. .......
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~------~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 117 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDE------AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHH------HHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence 44445788999999999987653221111100 11356778889999999997665533 11 1111111
Q ss_pred ----H-HHHhHh-hcCHHHHHHHHHHHHccCCC---c---hhhhhhHHHHHHhccChHHHHHHhhhhhccChhhh-----
Q 000134 1120 ----E-LLSNKK-SGNWAEVFTSCEQALQMEPT---S---VQRHSDVLNCLLNMCHLQAMVTHVDGLISRIPQYK----- 1182 (2096)
Q Consensus 1120 ----q-il~~E~-~G~W~~A~~~YE~~Lq~~p~---~---~~~~~glL~CL~~LGq~~~ll~~~~gl~~~~p~~~----- 1182 (2096)
. .-.++. .|+|++|..+|+++++..+. + ......+-.++..+|+|+..+...+......+...
T Consensus 118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~ 197 (290)
T d1qqea_ 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (290)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhh
Confidence 1 122444 69999999999999764321 1 22345567788899999988877665443222111
Q ss_pred h-hHhHHHHHHHHhcCChhhHHHhhcccCccCccccCCCCCcchhHH-HHHHHHHHHccCchhHHHHHH
Q 000134 1183 K-TWCMQGVQAAWRLGRWDLMDEYLSGADEEGLLCSSSESNASFDMD-VAKILQAMMKKDHFSVSDKIG 1249 (2096)
Q Consensus 1183 ~-~~~~~~vEAAWrlg~Wd~l~~~l~~~~~~gl~~~~~~~~~~f~~~-l~kaL~al~~~d~~~f~~~i~ 1249 (2096)
. .......-+--..|+++...+.+....... ..-..+.+.. +...+.++.++|...|.+.|.
T Consensus 198 ~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~-----~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~ 261 (290)
T d1qqea_ 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSED-----PNFADSRESNFLKSLIDAVNEGDSEQLSEHCK 261 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------------HHHHHHHHHHHHTTCTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCccchHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 0 111111222234678877776666543210 0001111222 233445566777777777664
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=82.16 E-value=3.3 Score=41.99 Aligned_cols=115 Identities=11% Similarity=0.025 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhhcCCcccccccccccccccCCCCCCCCCcccccccchhchhHHHHHHHHHHHHH
Q 000134 1383 VHMEKAKLLWSTRRSDGAIAELQQNLLNKPVEVVGSTAISSITSLSLVPLNPLPVLSNTQTLNEKRDIAKTLLLYSRWIH 1462 (2096)
Q Consensus 1383 ~~iE~AKLLW~~g~~~~Ai~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~Aka~LllakWl~ 1462 (2096)
..-|.+..++..|+..+|+...++++.-.+.. ... ............+.+++-+|.-..
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~-------------------~~~--~~~~~~~~~~~~~~~~~Nla~~~~ 75 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEME-------------------YGL--SEKESKASESFLLAAFLNLAMCYL 75 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC-------------------CSC--CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-------------------hcc--chhhhhhcchhHHHHHHhHHHHHH
Confidence 45577888999999999999998887632210 000 000111112233344444444333
Q ss_pred HhCCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHHHHHHHHhhccCCcc
Q 000134 1463 YTGQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDVLLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1463 ~~~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~ai~~Y~~sl~~g~~~ 1542 (2096)
. ....++++..|.+|++++|...++||..|.-|..+ | -...|+.+|-+++...+++
T Consensus 76 ~--l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l--------------~--------~~~~A~~~~~~al~l~P~n 131 (168)
T d1kt1a1 76 K--LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM--------------N--------EFESAKGDFEKVLEVNPQN 131 (168)
T ss_dssp H--TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------T--------CHHHHHHHHHHHHHSCTTC
T ss_pred H--hhhcccchhhhhhhhhcccchHHHHHHHHHHHHHc--------------C--------CHHHHHHHHHHHHHhCCCC
Confidence 3 34578899999999999999999999999876432 1 1246899999999887654
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.64 E-value=4 Score=42.25 Aligned_cols=110 Identities=10% Similarity=0.013 Sum_probs=72.2
Q ss_pred HHHHHHHhchhHHHHHHHHHHHHhhhcCCCCCccccCCCCChhhHHHHHHHHhcCCChHHHHHHHHHhccCChhHHHHHh
Q 000134 1045 TLARASFRCQAYARSLMYFESHVREKSGSFNPAAEKSGTFEDEDVSFLMEIYSFLDEPDGLSGLARLHKSLSLQDELLSN 1124 (2096)
Q Consensus 1045 lLA~aA~~C~ayaRAL~ylE~~~r~~~~~~~~~~~~~~~~~~~~~~~L~~IYa~LdEpDgl~Gi~~~~~~~sl~~qil~~ 1124 (2096)
-.+.++...|.++.|+-++..-+.-.++..-+. ...+......-..|...|. + -....+..+
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~-~~~~~w~~~~r~~l~~~~~-----~------------a~~~la~~~ 77 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDD-LRDFQFVEPFATALVEDKV-----L------------AHTAKAEAE 77 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG-GTTSTTHHHHHHHHHHHHH-----H------------HHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCccccccc-CcchHHHHHHHHHHHHHHH-----H------------HHHHHHHHH
Confidence 357788899999999988888765443221100 0000000111122222221 0 122345567
Q ss_pred HhhcCHHHHHHHHHHHHccCCCchhhhhhHHHHHHhccChHHHHHHhh
Q 000134 1125 KKSGNWAEVFTSCEQALQMEPTSVQRHSDVLNCLLNMCHLQAMVTHVD 1172 (2096)
Q Consensus 1125 E~~G~W~~A~~~YE~~Lq~~p~~~~~~~glL~CL~~LGq~~~ll~~~~ 1172 (2096)
...|+|++|+.+++++++.+|.+-..+..+++|+.++|++...+...+
T Consensus 78 ~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~ 125 (179)
T d2ff4a2 78 IACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYR 125 (179)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 899999999999999999999999999999999999999987765433
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=81.18 E-value=7.7 Score=41.28 Aligned_cols=125 Identities=16% Similarity=0.104 Sum_probs=84.9
Q ss_pred HHHhhcccCccchhhHHHHHHHHHHccCCchhhhhhhhHHHHHHHHHhhcccHHHHHHHHHHHhHhhhhhhhhhhccCcc
Q 000134 152 YFEFLYDESSEEVQLSCVRVIRRILVHGTRDVLLKTRSEWIKCIEFLLLNKRKAIRDAFCTQIGYFLQDTVLSSLFLDEN 231 (2096)
Q Consensus 152 ~~~~l~~~~~~~v~~~~~~~l~~il~h~~~~~~~~~~~~w~~~~~~~~~~~~r~vR~a~~~~~~~~~~~~~~~~~~~~~~ 231 (2096)
++++|- ..+..|+.+.+..|..+ ++.++ +.-+..++.|++..||.+++..+..+-
T Consensus 24 L~~~L~-d~~~~vR~~A~~~L~~~---~~~~~--------~~~l~~~l~d~~~~vr~~a~~aL~~l~------------- 78 (276)
T d1oyza_ 24 LFRLLD-DHNSLKRISSARVLQLR---GGQDA--------VRLAIEFCSDKNYIRRDIGAFILGQIK------------- 78 (276)
T ss_dssp HHHHTT-CSSHHHHHHHHHHHHHH---CCHHH--------HHHHHHHHTCSSHHHHHHHHHHHHHSC-------------
T ss_pred HHHHhc-CCCHHHHHHHHHHHHhh---CCHhH--------HHHHHHHHcCCCHHHHHHHHHHHHHhc-------------
Confidence 455554 57779999999998876 33221 223344559999999999999887732
Q ss_pred cccchhhHHHHHHHHHHhhhcCChhHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHhhCCCCcchHHHHHHHH
Q 000134 232 ASSRSNELKLLDVIKLAFTAADDPLILETLLESTAELMMAVDVHSQHFLFLLILLVEQLDNPHVTVRMNASRLI 305 (2096)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~d~~i~eTll~~~~~i~~~~~~~~e~~~~~l~~Li~~L~~~n~~v~~~A~~~i 305 (2096)
.........+..+...+..-+|+.|..+.+.+++.++... .......+-.|...+..+++.|+..|..-+
T Consensus 79 -~~~~~~~~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~---~~~~~~~~~~l~~~~~d~~~~vr~~a~~~l 148 (276)
T d1oyza_ 79 -ICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKN---PIYSPKIVEQSQITAFDKSTNVRRATAFAI 148 (276)
T ss_dssp -CCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred -cccccccchHHHHHHHHhcCCChhHHHHHHHHHHHHcccc---chhhHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 1122334445555666666788999999999999985432 233334555677788888898888776544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.34 E-value=1.5 Score=43.95 Aligned_cols=82 Identities=11% Similarity=0.137 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccchHHHHHHHHhhhHHHHHHHHhhhhhcccCCcchhhhhchHHHH
Q 000134 1450 IAKTLLLYSRWIHYT-GQKQKEDVITLYSRVRELQPMWEKGYFYMAKYCDDVLVDARKRQEENSEIGPSEKRWWFYVPDV 1528 (2096)
Q Consensus 1450 ~Aka~LllakWl~~~-~~~~~~~i~~~Y~~a~~l~~~weK~~~~la~y~d~l~~~~~~~~e~~~~~g~~~~~~~~~l~~a 1528 (2096)
.|.+++.++.|.... .....++.++.|++|++++|++..+|+.+|.-|..+-.- .+ ...........+
T Consensus 37 ~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~----------~~-~~~~~~~~~~~A 105 (145)
T d1zu2a1 37 WGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL----------TP-DETEAKHNFDLA 105 (145)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH----------CC-CHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccc----------hh-hHHHHHHhHHHh
Confidence 455666555553110 112257789999999999999999999999988654210 00 011112345679
Q ss_pred HHHHHHhhccCCcc
Q 000134 1529 LLFYAKGLHRGHKN 1542 (2096)
Q Consensus 1529 i~~Y~~sl~~g~~~ 1542 (2096)
+.+|-+++...+.+
T Consensus 106 ~~~~~kal~l~P~~ 119 (145)
T d1zu2a1 106 TQFFQQAVDEQPDN 119 (145)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred hhhhhcccccCCCH
Confidence 99999999887654
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