Citrus Sinensis ID: 000151

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------1690------1700------1710------1720------1730------1740------1750------1760------1770------1780------1790------1800------1810------1820------1830------1840------1850------1860------1870------1880------1890------1900------1910------1920------1930------1940------1950------1960------1970------1980------1990------2000------2010------2020------203

MEIDSPPDFSPPKPRDRIVRRLMNIGVPEEFLDYSGIVNFAKNDKSRIPELVSTILPPDEEVAEVIQDAKAKNKKVSVGPNMKGRFRESMLWLQWLMFEREPEKVLRKLSKIGQRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVTAWKREGFCSRHKGAEQIQPLPEKYANSAAPVLDALFIYWENKLSLAESVGQENPRASDHVAERRKLANELTFAVVEMLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRKLHELLLKLLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTPRLVKEMNLLEMLLGCLREIFDSCAGDDSCLQVAKWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLVDGAFSSAVSEETRYDFSMYKQDIGDGDSLRHAKVGRLSQESSVCGAMGRSSLSASTLKADDVIFDAVSDVLLPHSVTWVAHECLRAMENWLGVDDRSVSVNDILSPNASRISGSNFVALKKTLSKIKKGKSIFSRLAGSSEVTAGIQESGDLDNATSMGKESKITISGERDTASWRSAGFNDSEMEGECATELDNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAENPLSAVSLDFFGHILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGLSNYLSLNLERPSEYEPILVQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLRFCSVSALTAQLPRWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALALDVCFQKKKSGDQSCDIGGSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGADNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHLSQSLPRDDTSGSFSASDSEKRKAKARERQAAILEKMKAEQFKFLSSISSNIEDAPKSAPEVTNYDAEHVSEESVQDVCALCHDPNSRTPVSYLILLQKSRLLSFVDRGSPSWDQDQWLGKECGTISANNMVNQFGTNTPSSGLGVISSCQLAQVAEEAVNQFAYNGKPEEVNSVLEFVKAQFPSLRNIPIPFTFSNGRKCTASSMEMFEQDLYLSICREMRKNMTYPDLMKEDEECSVAEGGLKNRGNSDSFLLGKYVASISKEMRENASASEVSRGDRIAAESLVYDGFGPIDCDGIHLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPALPWDLQRINEQPTVSGVGLSLDSSSSFTTREENTSFQLQQAVSLLQSASNVVGKADVIESFPLMKNEIMASNVEAVSRRMCKMYFQNKLDKFFGSARVNPSLIMWDALKYSLMSMEIAARSEKTSTTPIYDVNALDKELKSSSGFVLSLLLKVVQSMRSKNSLHVLQRFRGIQLFAESICSGTSIDNPGGRCKRGGNMLSILKHADVEVSYPDIQFWNRASDPVLARDPFSSLMWVLFCLPCQFILCKESLLSLVHVFYAVTLSQAVLSCCGKLQSKVNELGFSDSLISDISKLLGEFGSAQEYFVSNYIDPSCDIKDMIRRLSFPYLRSDMMDSSDDALSDLKEIQEVEKMFKIPSLDVILKDEVLRSLVLKWFHHFSKEFEVHRFQHVLYSTPAVPFKLMCLPHLYQDLLQRYIKQCCSDCKSVLDEPALCLLCGRLCSPSWKPCCRESSCQSHAVACGAGTGVFLLIRRTTILLQRCARQAPWPSPYLDAFGEEDIEMHRGKPLYLNEERYAALTYMVASHGLDRSSKVLSQTTIGGFFLV

ccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHcccccHHHHHHHcccccHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccEEEEccccccccccEEcccccccccccccEEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEcccccHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHcccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEcHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHccccccccccccccHHHHHcHHHHHHHHHHHHHHccccccHHHHHcHHHHHcccccccHHHcccHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccccHHHHHHHcccccccccHHHHHHHHHccccccccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHccccccccccHHHHHHHHHHHHHccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEcccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccHHccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccEEccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHcHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHccccccHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccEEEccccccccccccccccccccHHHHHHccccEEEEEEEcccEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHccccccEEEc

cccccccccccccHHHHHHHHHHHccccHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccEEccccEEEEEccccccccEEEEHHHcccccccccEEEEEEccccccccccHHHHccccHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccEccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEHcHHHccccccccccccEEcEEcccccEEEEEcccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHccccccccHcccccccccccccccccccccccccccccccEEEEccccccccccccccccHHHHcccccccccccccccccccccccccccHHccccccccHcccEEEEcccccEEEEEEccccEEEcHHHHHHHHHHHHHHHccccccccccccccHccccccccccHHHcHHcccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHccHHHHHHHHHHHcccHHHHHccHHHHHHHHHHHHccHHHHHHHHHHHccHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHHcccccccccHHHHHHHHHHcccccccccccEEEccHHHHHHccccEEEccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEEcccccccEEEEEEEEcccEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHcccccccccccccHHHcccccHHcHHHcccccccccccccccccccccccccccccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHccEccccccccccccccccccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHcHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccHHHHHHHHccccccccHHHHccccccccHHHccccccccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccHHHHccHHHHHHHHHHHHHHHHHcHHcccccccEcccccccHHccccccHHHHHHHHHHcccccccccccccEEEEEEccEEEccccccccccccHHHHHHccccEEEEEEEEcEEEEEEEcccccccccccHHccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHEEEEEEEc

meidsppdfsppkprdRIVRRLMnigvpeefldysgivnfakndksripelvstilppdeEVAEVIQDAKaknkkvsvgpnmkgrFRESMLWLQWLMFEREPEKVLRKLSkigqrgvcgavwgnndiayrcrtcehdptcaicvpcfqngnhkehdysiiytgggccdcgdvtawkregfcsrhkgaeqiqplpekyansaapVLDALFIYWENKLSLAEsvgqenprasdhVAERRKLANELTFAVVEMLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRKLHELLLKLLGEPIFKYEFAKVFLSYYPVFvkdairehsddtikkypllstFSVQiftvptltpRLVKEMNLLEMLLGCLREIFdscagddsclQVAKWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAWMKLLTFVqgmnpqkretgihireeneymhlplvldhsianiqpllvdgafssavseetrydfsmykqdigdgdslrhakvgrlsqessvcgamgrsslsastlkaddVIFDAVsdvllphsvTWVAHECLRAMEnwlgvddrsvsvndilspnasrisgsNFVALKKTLSKIKKGKSIFSrlagssevtagiqesgdldnatsmgkeskitisgerdtaswrsagfndsemegecateldnlhvlslcywpditydvssqdvsvhiPLHRLLSLIIQKALRRCygesaasesadtgaenplsavsldffghilggchpygfsafvmehPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGlsnylslnlerpseyepILVQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDATHSQLVkslprdlskFDQLQEILDAVAMyshpsgfnqgmYSLRWSYWKeldiyhprwssrdlQVAEERYLRFCSVSaltaqlprwtkiyyplesiagiATCKVVLQVIRAVLFYAVftdnptdsrapyGVLLTALHLLALALDVCFqkkksgdqscdiggstpildFASEEIAEGLNNGAGKQSLLSLLVFLMGMykkdgadnfleagnCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHLsqslprddtsgsfsasdSEKRKAKARERQAAILEKMKAEQFKFLSSISsniedapksapevtnydaehvseesVQDVCalchdpnsrtpVSYLILLQKSrllsfvdrgspswdqdqwlgkecgtisannmvnqfgtntpssglgvissCQLAQVAEEAVNQfayngkpeeVNSVLEFVKAqfpslrnipipftfsngrkctassmeMFEQDLYLSICREMrknmtypdlmkedeecsvaegglknrgnsdsfLLGKYVASISKEMRenasasevsrgdriaaeslvydgfgpidcdgihlsscghavhQGCLDRYVSSLKERYNrriifegghivdpdqgeflcpVCRQLANsvlpalpwdlqrineqptvsgvglsldssssfttreenTSFQLQQAVSLLQSAsnvvgkadviesfplmKNEIMASNVEAVSRRMCKMYFQNKLDKffgsarvnpsLIMWDALKYSLMSMEIAARsektsttpiydvnaldkelksssGFVLSLLLKVVQSMRSKNSLHVLQRFRGIQLFAESIcsgtsidnpggrckrggnmLSILKhadvevsypdiqfwnrasdpvlardpfssLMWVLFCLpcqfilckesLLSLVHVFYAVTLSQAVLSCCGKLQSkvnelgfsdSLISDISKLLGEFgsaqeyfvsnyidpscdikDMIRRlsfpylrsdmmdssdDALSDLKEIQEVEKMfkipsldvilKDEVLRSLVLKWFHHFSKEFEVHRfqhvlystpavpfklmclPHLYQDLLQRYIKQCCSdcksvldepalcllcgrlcspswkpccresscqshavaCGAGTGVFLLIRRTTILLQRcarqapwpspyldafgeediemhrgkplylneERYAALTYMVAShgldrsskvlsqttiggfflv

meidsppdfsppkprdrIVRRLMNIGVPEEFLDYSGIVNFAKNDKSRIPELVSTILPPDEEVAEVIQdakaknkkvsvgpnmkgrfRESMLWLQWLMFEREPEKVLRKlskigqrgvcgavwGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVTAWKREGFCSRHKGAEQIQPLPEKYANSAAPVLDALFIYWENKLSLAESVGQENPRASDHVAERRKLANELTFAVVEMLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRKLHELLLKLLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTPRLVKEMNLLEMLLGCLREIFDSCAGDDSCLQVAKWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLVDGAFSSAVSEETRYDFSMYKQDIGDGDSLRHAKVGRLSQESSVCGAMGRSSLSASTLKADDVIFDAVSDVLLPHSVTWVAHECLRAMENWLGVDDRSVSVNDILspnasrisgsnfvALKKTLskikkgksifsrlagssevtagiqesgdldnatsmgkeskitisgerdtaswRSAGFNDSEMEGECATELDNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAENPLSAVSLDFFGHILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGLSNYLSLNLERPSEYEPILVQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLRFCSVsaltaqlprWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALALDVCFQKKKSGDQSCDIGGSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGADNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHlsqslprddtsgsfsasdsekrkAKARERQAAILEKMKAEQFKFLSSISSNIEDAPKSAPEVTNYDAEHVSEESVQDVCALCHDPNSRTPVSYLILLQKSRLLSFVDRGSPSWDQDQWLGKECGTISANNMVNQFGTNTPSSGLGVISSCQLAQVAEEAVNQFAYNGKPEEVNSVLEFVKAQfpslrnipipftFSNGRKCTASSMEMFEQDLYLSICREMRKNMTYPDLMKEDEECSVAEgglknrgnsdsfLLGKYVASISKEMRenasasevsrgdriAAESLVYDGFGPIDCDGIHLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPALPWDLQRINEQPTVSGVGLSLDSSSSFTTREENTSFQLQQAVSLLQSASNVVGKADVIESFPLMKNEIMASNVEAVSRRMCKMYFQNKLDKFFGSARVNPSLIMWDALKYSLMSMEIAARsektsttpiyDVNALDKELKSSSGFVLSLLLKVVQSMRSKNSLHVLQRFRGIQLFAESIcsgtsidnpggrcKRGGNMLSILKHADVEVSYPDIQFWNRASDPVLARDPFSSLMWVLFCLPCQFILCKESLLSLVHVFYAVTLSQAVLSCCGKLQSKVNELGFSDSLISDISKLLGEFGSAQEYFVSnyidpscdikDMIRRLSFPYLRSDMMDSSDDALSDLKEIQEVEKMfkipsldviLKDEVLRSLVLKWFHHFSKEFEVHRFQHVLYSTPAVPFKLMCLPHLYQDLLQRYIKQCCSDCKSVLDEPALCLLCGRLCSPSWKPCCRESSCQSHAVACGAGTGVFLLIRRTTILLQRCARQAPWPSPYLDAFGEEDIEMHRGKPLYLNEERYAALTYMVAShgldrsskvlsqttiggfflv

MEIDSPPDFSPPKPRDRIVRRLMNIGVPEEFLDYSGIVNFAKNDKSRIPELVSTILPPDEEVAEVIQDAKAKNKKVSVGPNMKGRFRESMLWLQWLMFEREPEKVLRKLSKIGQRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTgggccdcgdVTAWKREGFCSRHKGAEQIQPLPEKYANSAAPVLDALFIYWENKLSLAESVGQENPRASDHVAERRKLANELTFAVVEMLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRklhelllkllGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTPRLVKEMNLLEMLLGCLREIFDSCAGDDSCLQVAKWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLVDGAFSSAVSEETRYDFSMYKQDIGDGDSLRHAKVGRLSQESSVCGAMGRSSLSASTLKADDVIFDAVSDVLLPHSVTWVAHECLRAMENWLGVDDRSVSVNDILSPNASRISGSNFVAlkktlskikkgksiFSRLAGSSEVTAGIQESGDLDNATSMGKESKITISGERDTASWRSAGFNDSEMEGECATELDNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAENPLSAVSLDFFGHILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGLSNYLSLNLERPSEYEPILVQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLRFCSVSALTAQLPRWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVlltalhllalalDVCFQKKKSGDQSCDIGGSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGADNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHLSQSLPRDDTSGSFSASDSekrkakarerqaaILEKMKAEQFKFLSSISSNIEDAPKSAPEVTNYDAEHVSEESVQDVCALCHDPNSRTPVSYLILLQKSRLLSFVDRGSPSWDQDQWLGKECGTISANNMVNQFGTNTPSSGLGVISSCQLAQVAEEAVNQFAYNGKPEEVNSVLEFVKAQFPSLRNIPIPFTFSNGRKCTASSMEMFEQDLYLSICREMRKNMTYPDLMKEDEECSVAEGGLKNRGNSDSFLLGKYVASISKEMRENASASEVSRGDRIAAESLVYDGFGPIDCDGIHLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPALPWDLQRINEQPTvsgvglsldssssFTTREENTsfqlqqavsllqsasNVVGKADVIESFPLMKNEIMASNVEAVSRRMCKMYFQNKLDKFFGSARVNPSLIMWDALKYSLMSMEIAARSEKTSTTPIYDVNALDKELKSSSGFVLSLLLKVVQSMRSKNSLHVLQRFRGIQLFAESICSGTSIDNPGGRCKRGGNMLSILKHADVEVSYPDIQFWNRASDPVLARDPFSSLMWVLFCLPCQFILCKESLLSLVHVFYAVTLSQAVLSCCGKLQSKVNELGFsdslisdiskllGEFGSAQEYFVSNYIDPSCDIKDMIRRLSFPYLRsdmmdssddalsdlKEIQEVEKMFKIPSLDVILKDEVLRSLVLKWFHHFSKEFEVHRFQHVLYSTPAVPFKLMCLPHLYQDLLQRYIKQCCSDCKSVLDEPALCLLCGRLCSPSWKPCCRESSCQSHAVACGAGTGVFllirrttillQRCARQAPWPSPYLDAFGEEDIEMHRGKPLYLNEERYAALTYMVASHGLDRSSKVLSQTTIGGFFLV

*****************IVRRLMNIGVPEEFLDYSGIVNFAKNDKSRIPELVSTIL***************************GRFRESMLWLQWLMFEREPEKVLRKLSKIGQRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVTAWKREGFCSRHKGAEQIQPLPEKYANSAAPVLDALFIYWENKLSLA******************KLANELTFAVVEMLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRKLHELLLKLLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTPRLVKEMNLLEMLLGCLREIFDSCAGDDSCLQVAKWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLVDGAFSSAVSEETRYDFSMYKQ**********************************TLKADDVIFDAVSDVLLPHSVTWVAHECLRAMENWLGVDDRSVSVNDIL***********************************************************************************ECATELDNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYG***************LSAVSLDFFGHILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGLSNYLSLNLERPSEYEPILVQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLRFCSVSALTAQLPRWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALALDVCFQKKKSGDQSCDIGGSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGADNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAP*******************************************************************************VQDVCALCHDPNSRTPVSYLILLQKSRLLSFVDRGSPSWDQDQWLGKECGTISANNMVNQFGTNTPSSGLGVISSCQLAQVAEEAVNQFAYNGKPEEVNSVLEFVKAQFPSLRNIPIPFTFSNGRKCTASSMEMFEQDLYLSICREMRKNMTY*************************FLLGKYVA********************IAAESLVYDGFGPIDCDGIHLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPALPWDLQRINE*******************************VSLLQSASNVVGKADVIESFPLMKNEIMASNVEAVSRRMCKMYFQNKLDKFFGSARVNPSLIMWDALKYSLMSMEIAAR*****TTPIYDVNALDKELKSSSGFVLSLLLKVVQSMRSKNSLHVLQRFRGIQLFAESICSGTSIDNPGGRCKRGGNMLSILKHADVEVSYPDIQFWNRASDPVLARDPFSSLMWVLFCLPCQFILCKESLLSLVHVFYAVTLSQAVLSCCGKLQSKVNELGFSDSLISDISKLLGEFGSAQEYFVSNYIDPSCDIKDMIRRLSFPYLR***************EIQEVEKMFKIPSLDVILKDEVLRSLVLKWFHHFSKEFEVHRFQHVLYSTPAVPFKLMCLPHLYQDLLQRYIKQCCSDCKSVLDEPALCLLCGRLCSPSWKPCCRESSCQSHAVACGAGTGVFLLIRRTTILLQRCARQAPWPSPYLDAFGEEDIEMHRGKPLYLNEERYAALTYMVASHGLDRSSKVLSQTTIGGFF**

*********************LMNIGVPEEFLDYSGIVNFAKNDKSRIPELVSTILPPDEEVAEVIQ****************GRFRESMLWLQWLMFEREPEKV************CGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVTAWKREGFCS**K***********YANSAAPVLDALFIYWENKLSLAESVGQENPRASDHVAERRKLANELTFAVVEMLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRKLHELLLKLLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTPRLVKEMNLLEMLLGCLREIFDSCAGDDSCLQVAKWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLVDGAFSSAVSEETRYDFSMYKQDIGDGDSLRHAKVGRLSQESS***************KADDVIFDAVSDVLLPHSVTWVAHECLRAMENWLG***************************************************AGIQESGDLDNATSMGKESKITISGERDTASWRSAGFNDSEMEGECATELDNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAENPLSAVSLDFFGHILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGLSNYLSLNLERPSEYEPILVQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEILDAVAMYSHPSGF**GMYSLRWSYWKELDIYHPRWSSRDLQVAE********************KIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALALDV****************STPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYK*******LEAGNCNLSSVIESLLKKFAEIDSRCMT****************************************************************************************DVCALCHDPNSRTPVSYLILLQKSRLLSFVDRGSPSWDQDQWLG***********************************************************************************SSMEMFEQDLYLSICREMRKNMTYPDLMKEDEECS*******************YVASI*************************YDGFGPIDCDGIHLSSCGHAVHQGCLDRYVSSL**************IVDPDQGEFLCPVCRQLANSVLPALPWDL*******************S****************************************************RRMC***************RVNPSLIMWDALKYSLMSMEI***************NALDKELKSSSGFVLSLLLKVVQSMRSKNSLHVLQRFRGIQLFAESICSGTSIDNPGGRCKRGGNMLSILKHADVEVSYPDIQFWNRASDPVLARDPFSSLMWVLFCLPCQFILCKESLLSLVHVFYAVTLSQAVLSCCGKL**********DSLISDISKLLGEFGSAQEYFVSNYIDPSCDIKDMIRRLSFPYLRSDMMDSSDDALSDLKEIQEVEKMFKIPSLDVILKDEVLRSLVLKWFHHFSKEFEVHRFQHVLYSTPAVPFKLMCLPHLYQDLLQRYIKQCCSDCKSVLDEPALCLLCGRLCSPSWKPCCRESSCQSHAVACGAGTGVFLLIRRTTILLQRCARQAPWPSPYLDAFGEEDIEMHRGKPLYLNEERYAALTYMVASHGLDRSSKVLSQTTIGGFFLV

***********PKPRDRIVRRLMNIGVPEEFLDYSGIVNFAKNDKSRIPELVSTILPPDEEVAEVIQDAKAKNKKVSVGPNMKGRFRESMLWLQWLMFEREPEKVLRKLSKIGQRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVTAWKREGFCSRHKGAEQIQPLPEKYANSAAPVLDALFIYWENKLSLA**************AERRKLANELTFAVVEMLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRKLHELLLKLLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTPRLVKEMNLLEMLLGCLREIFDSCAGDDSCLQVAKWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLVDGAFSSAVSEETRYDFSMYKQDIGDGDSLRHAKVGRLSQESSVCGAMGRSSLSASTLKADDVIFDAVSDVLLPHSVTWVAHECLRAMENWLGVDDRSVSVNDILSPNASRISGSNFVALKKTLSKIKKGKSIFSRLAGSSEVTAGIQESGDLDNATSMGKESKITISGERDTASWRSAGFNDSEMEGECATELDNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLIIQKALRR****************NPLSAVSLDFFGHILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGLSNYLSLNLERPSEYEPILVQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLRFCSVSALTAQLPRWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALALDVCFQKKKSGDQSCDIGGSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGADNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHL***************************RQAAILEKMKAEQFKFLSSISSNIEDAPKSAPEVTNYDAEHVSEESVQDVCALCHDPNSRTPVSYLILLQKSRLLSFVDRGSPSWDQDQWLGKECGTISANNMVNQFGTNTPSSGLGVISSCQLAQVAEEAVNQFAYNGKPEEVNSVLEFVKAQFPSLRNIPIPFTFSNGRKCTASSMEMFEQDLYLSICREMRKNMTYPDLMKEDEECSVAEGGLKNRGNSDSFLLGKYVASISKE************GDRIAAESLVYDGFGPIDCDGIHLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPALPWDLQRINEQPTV**********************QLQQAVSLLQSASNVVGKADVIESFPLMKNEIMASNVEAVSRRMCKMYFQNKLDKFFGSARVNPSLIMWDALKYSLMSMEIAARSEKTSTTPIYDVNALDKELKSSSGFVLSLLLKVVQSMRSKNSLHVLQRFRGIQLFAESICSGTSIDNPGGRCKRGGNMLSILKHADVEVSYPDIQFWNRASDPVLARDPFSSLMWVLFCLPCQFILCKESLLSLVHVFYAVTLSQAVLSCCGKLQSKVNELGFSDSLISDISKLLGEFGSAQEYFVSNYIDPSCDIKDMIRRLSFPYLRSDMMDSSDDALSDLKEIQEVEKMFKIPSLDVILKDEVLRSLVLKWFHHFSKEFEVHRFQHVLYSTPAVPFKLMCLPHLYQDLLQRYIKQCCSDCKSVLDEPALCLLCGRLCSPSWK**********HAVACGAGTGVFLLIRRTTILLQRCARQAPWPSPYLDAFGEEDIEMHRGKPLYLNEERYAALTYMVASHGLDRSSKVLSQTTIGGFFLV

**********PPKPRDRIVRRLMNIGVPEEFLDYSGIVNFAKNDKSRIPELVSTILPPDEEVAEVIQDAKAKNKKVSVGPNMKGRFRESMLWLQWLMFEREPEKVLRKLSKIGQRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVTAWKREGFCSRHKGAEQIQPLPEKYANSAAPVLDALFIYWENKLSLAESVGQENPRASDHVAERRKLANELTFAVVEMLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRKLHELLLKLLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTPRLVKEMNLLEMLLGCLREIFDSCAGDDSCLQVAKWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLVDGAFSS**S*ETRYDFSMYKQDIGD*DSLRHAKVGRLSQESSVCGAMGRSSLSASTLKADDVIFDAVSDVLLPHSVTWVAHECLRAMENWLGVDDRSVS*********************KTL******KSIFSRLAGSSEVTAGIQESGDLDNATSMGK*************************EGECATELDNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESAD*GAENPLSAVSLDFFGHILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGLSNYLSLNLERPSEYEPILVQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLRFCSVSALTAQLPRWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALALDVCFQKKK****SCDIGGSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGADNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLA**************************************I*EK*************************************SVQDVCALCHDPNSRTPVSYLILLQKSRLLSFVDRGSPSW**********************************SSCQLAQVAEEAVNQFAYNGKPEEVNSVLEFVKAQFPSLRNIPIPFTFSNGRKCTASSMEMFEQDLYLSICREMRKNMTYPDLM******************SDS****K****************************LVYDGFGPIDCDGIHLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPALPWDLQRINEQPTVSGVGLSLDSSSSFTTREENTSFQLQQAVSLLQSASNVVGKADVIESFPLMKNEIMASNVEAVSRRMCKMYFQNKLDKFFGSARVNPSLIMWDALKYSLMSMEIAARSEKTSTTPIYDVNALDKELKSSSGFVLSLLLKVVQSMRSKNSLHVLQRFRGIQLFAESICSGTSIDNPGGRCKRGGNMLSILKHADVEVSYPDIQFWNRASDPVLARDPFSSLMWVLFCLPCQFILCKESLLSLVHVFYAVTLSQAVLSCCGKLQSKVNELGFSDSLISDISKLLGEFGSAQEYFVSNYIDPSCDIKDMIRRLSFPYLRSDMMDSSDDALSDLKEIQEVEKMFKIPSLDVILKDEVLRSLVLKWFHHFSKEFEVHRFQHVLYSTPAVPFKLMCLPHLYQDLLQRYIKQCCSDCKSVLDEPALCLLCGRLCSPSWKPCCRESSCQSHAVACGAGTGVFLLIRRTTILLQRCARQAPWPSPYLDAFGEEDIEMHRGKPLYLNEERYAALTYMVASHGLDRSSKVLSQTTIGGFFLV

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		2029	2.2.26 [Sep-21-2011]
Q6WKZ8		1755	E3 ubiquitin-protein liga	yes	no	0.213	0.247	0.273	1e-29
Q8IWV8		1755	E3 ubiquitin-protein liga	yes	no	0.217	0.251	0.255	2e-28
Q5U430		1889	E3 ubiquitin-protein liga	no	no	0.063	0.068	0.444	6e-23
Q6ZT12		1888	E3 ubiquitin-protein liga	no	no	0.063	0.068	0.437	2e-22
Q8IWV7		1749	E3 ubiquitin-protein liga	no	no	0.246	0.286	0.229	3e-22
Q9VX91		1824	E3 ubiquitin-protein liga	yes	no	0.155	0.173	0.273	1e-21
O70481		1757	E3 ubiquitin-protein liga	no	no	0.155	0.179	0.257	1e-20
O13731		2052	E3 ubiquitin-protein liga	yes	no	0.093	0.092	0.261	2e-14
P91133		2058	E3 ubiquitin-protein liga	yes	no	0.114	0.113	0.25	6e-14
O60152		1958	E3 ubiquitin-protein liga	no	no	0.045	0.046	0.356	4e-13

>sp\|Q6WKZ8\|UBR2_MOUSE E3 ubiquitin-protein ligase UBR2 OS=Mus musculus GN=Ubr2 PE=1 SV=2	Back alignment and function desciption

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 141/516 (27%), Positives = 233/516 (45%), Gaps = 82/516 (15%)

Query: 682  ITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAEN-PLSAVSLDFFGH 740
            I Y VS + VS+H+P+ RLL+ +        +   + SE A    E  PLS +S      
Sbjct: 599  IRYCVSQEKVSIHLPISRLLAGL--------HVLLSKSEVAYKFPELLPLSELS------ 644

Query: 741  ILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELD 800
                         ++EHPLR  V CAQVHAGMWRRNG + ++   +Y  V+   +  + D
Sbjct: 645  ----------PPMLIEHPLRCLVLCAQVHAGMWRRNGFSLVNQIYYYHNVKCRREMFDKD 694

Query: 801  LFLLQCCAALAPADLYVNRIIERFGLSNYLS-----------LNLERPSEYEPILVQEML 849
            + +LQ   ++   + ++  ++ RF L    S           +  +   +    L++EML
Sbjct: 695  IVMLQTGVSMMDPNHFLMIMLSRFELYQLFSTPDYGKRFSSEVTHKDVVQQNNTLIEEML 754

Query: 850  TLIIQILQERRFCGL---TTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQEIL 906
             LII ++ ER   G+      + +KRE++H+L+I    HS+LVKSLP D +K   ++ ++
Sbjct: 755  YLIIMLVGERFNPGVGQVAATDEIKREIIHQLSIKPMAHSELVKSLPEDENKETGMESVI 814

Query: 907  DAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLRFCSVSAL-TAQL 965
            ++VA +  P    +GMY L+    KE ++Y   +S  +   AEE   +    +   TA  
Sbjct: 815  ESVAHFKKPGLTGRGMYELKPECAKEFNLYFYHFSRAEQSKAEEAQRKLKRENKEDTALP 874

Query: 966  PRWTKIYYPL-ESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLLALA 1024
            P     + PL  S+  I  C V+L ++  +L +AV       S +   +L   LHL+ +A
Sbjct: 875  PPALPPFCPLFASLVNILQCDVMLYIMGTILQWAVEHHGSAWSES---MLQRVLHLIGMA 931

Query: 1025 LDVCFQKKKSGDQSCDIGGSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGA 1084
            L    Q++K   ++  + G      F +++I++  +      S+L++L  L         
Sbjct: 932  L----QEEKHHLENA-VEGHVQTFTF-TQKISKPGDAPHNSPSILAMLETLQNAPS---- 981

Query: 1085 DNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHLSQSLPRDDTSGSFSAS 1144
               LEA       +I  LLK F  I               +   S S P  +  G+    
Sbjct: 982  ---LEAHK----DMIRWLLKMFNAIKK-------------IRECSSSSPVAEAEGTIMEE 1021

Query: 1145 DS-------EKRKAK-ARERQAAILEKMKAEQFKFL 1172
             S        KRKA+ AR R+  I+ +M   Q  F+
Sbjct: 1022 SSRDKDKAERKRKAEIARLRREKIMAQMSEMQRHFI 1057

E3 ubiquitin-protein ligase which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N-terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. Plays a critical role in chromatin inactivation and chromosome-wide transcriptional silencing during meiosis via ubiquitination of histone H2A. Binds leucine and is a negative regulator of the leucine-mTOR signaling pathway, thereby controlling cell growth.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|Q8IWV8\|UBR2_HUMAN E3 ubiquitin-protein ligase UBR2 OS=Homo sapiens GN=UBR2 PE=1 SV=1	Back alignment and function description

>sp\|Q5U430\|UBR3_MOUSE E3 ubiquitin-protein ligase UBR3 OS=Mus musculus GN=Ubr3 PE=1 SV=3	Back alignment and function description

>sp\|Q6ZT12\|UBR3_HUMAN E3 ubiquitin-protein ligase UBR3 OS=Homo sapiens GN=UBR3 PE=2 SV=2	Back alignment and function description

>sp\|Q8IWV7\|UBR1_HUMAN E3 ubiquitin-protein ligase UBR1 OS=Homo sapiens GN=UBR1 PE=1 SV=1	Back alignment and function description

>sp\|Q9VX91\|UBR1_DROME E3 ubiquitin-protein ligase UBR1 OS=Drosophila melanogaster GN=UBR1 PE=2 SV=2	Back alignment and function description

>sp\|O70481\|UBR1_MOUSE E3 ubiquitin-protein ligase UBR1 OS=Mus musculus GN=Ubr1 PE=1 SV=2	Back alignment and function description

>sp\|O13731\|UBR11_SCHPO E3 ubiquitin-protein ligase ubr11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubr11 PE=3 SV=1	Back alignment and function description

>sp\|P91133\|UBR1_CAEEL E3 ubiquitin-protein ligase ubr-1 OS=Caenorhabditis elegans GN=ubr-1 PE=1 SV=2	Back alignment and function description

>sp\|O60152\|UBR1_SCHPO E3 ubiquitin-protein ligase ubr1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ubr1 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		2029
255583117		2073	ubiquitin ligase E3 alpha, putative [Ric	0.975	0.955	0.628	0.0
359482107		2048	PREDICTED: E3 ubiquitin-protein ligase U	0.984	0.975	0.632	0.0
449440333		2099	PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu	0.968	0.936	0.592	0.0
449483643		2089	PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu	0.968	0.941	0.592	0.0
356523153		2037	PREDICTED: E3 ubiquitin-protein ligase U	0.982	0.978	0.596	0.0
356567933		2036	PREDICTED: E3 ubiquitin-protein ligase U	0.981	0.977	0.592	0.0
357505675		2105	E3 ubiquitin-protein ligase ubr1 [Medica	0.965	0.930	0.576	0.0
297806169		1996	hypothetical protein ARALYDRAFT_487009 [	0.960	0.976	0.529	0.0
224090687		1774	predicted protein [Populus trichocarpa]	0.833	0.953	0.591	0.0
30679594		2006	proteolysis 6 [Arabidopsis thaliana] gi\|	0.959	0.970	0.526	0.0

>gi\|255583117\|ref\|XP_002532325.1\| ubiquitin ligase E3 alpha, putative [Ricinus communis] gi\|223527968\|gb\|EEF30052.1\| ubiquitin ligase E3 alpha, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 2527 bits (6549), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1286/2047 (62%), Positives = 1566/2047 (76%), Gaps = 67/2047 (3%)

Query: 1    MEIDSPPD-FSPPKPRDRIVRRLMNIGVPEEFLD---YSGIVNFAKNDKSRIPELVSTIL 56
            M+IDSPP+  +P KPRDR++RRL+ +G+ EE+L    Y GIV F  ++ S IPELVS+IL
Sbjct: 1    MDIDSPPETINPIKPRDRVMRRLVQLGIGEEYLQRRYYPGIVAFLMDNPSWIPELVSSIL 60

Query: 57   PPDEEVAEVIQDAKAKNKKVSVGPNMKGRFRESMLWLQWLMFEREPEKVLRKLSKIGQ-R 115
            P DEEVAE +Q  K+++KKV   P MK  FRE M+WLQWLMF  EP   L+ LSK+   R
Sbjct: 61   PLDEEVAEALQQNKSESKKVQ-SPTMKRYFRECMVWLQWLMFLGEPATALKSLSKMSTGR 119

Query: 116  GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTGGGCCDCGDVTAW 175
            GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHK+HDYSIIYTGGGCCDCGDVTAW
Sbjct: 120  GVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKDHDYSIIYTGGGCCDCGDVTAW 179

Query: 176  KREGFCSRHKGAEQIQPLPEKYANSAAPVLDALFIYWENKLSLAESVGQENPRASDHVAE 235
            KREGFCS HKGAEQIQPLPE+YANS  PVLDALF  W+ KL  AE++  ENPR+SD V  
Sbjct: 180  KREGFCSSHKGAEQIQPLPEEYANSVGPVLDALFSCWKKKLVSAETICHENPRSSDRVVL 239

Query: 236  RRKLANELTFAVVEMLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRKLH 295
             +K+ANELT+ VVEMLLEFCK+SESLLSFVS++VIS++GLL+ILVRAE F S+ V RKL+
Sbjct: 240  CKKVANELTYVVVEMLLEFCKHSESLLSFVSRKVISLVGLLEILVRAERFLSEGVARKLN 299

Query: 296  ELLLKLLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLT 355
            E+LLKLLGEPIFKYEF KVF+SYYP+ V +A++E  D ++KKYPLLSTFSVQI +VPTLT
Sbjct: 300  EMLLKLLGEPIFKYEFGKVFVSYYPLVVHEALKEGGDSSLKKYPLLSTFSVQILSVPTLT 359

Query: 356  PRLVKEMNLLEMLLGCLREIFDSCAGDDSCLQVAKWANLYETTNRVIGDIRFVMSHAAVS 415
            PRLVKEMNLL MLLGCL +IF  CAG+D  LQV KW NLYETT RV+ DIRFVMSHA V 
Sbjct: 360  PRLVKEMNLLAMLLGCLGDIFIHCAGEDDRLQVTKWGNLYETTIRVVEDIRFVMSHAIVP 419

Query: 416  KYATHEQLNISKAWMKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLV 475
            K+ T EQ +I + WM+LL+++QGM+P +RE G+HI EENE ++L  VLDHS+ANI  LLV
Sbjct: 420  KHVTREQRDILRTWMRLLSYLQGMSPLRREIGLHIEEENENINLLFVLDHSVANIHSLLV 479

Query: 476  DGAFSSAVSEETRYD-FS-MYKQDIGDGDSLRHAKVGRLSQESSVCGAMGRSSLSASTLK 533
            DGAFS+  SE+T  D FS M KQ++ + D +R+AKVGRLSQESSVCG +GRS+  A    
Sbjct: 480  DGAFST--SEDTDDDVFSGMSKQNMSEEDGMRYAKVGRLSQESSVCGVLGRSNQDA---- 533

Query: 534  ADDVIFDAVSDVLLPHSVTWVAHECLRAMENWLGVDDRSVSVNDILSPNASRISGSNFVA 593
              +V  D++   L+P SV+ + +ECLRA++NWLGVD  S +    LS   +  S SN +A
Sbjct: 534  --EVASDSIYHPLVPSSVSLLMYECLRAIDNWLGVDHASGA----LSSANTSTSNSNILA 587

Query: 594  LKKTLSKIKKGKSIFSRLAGSSE---------VTAGIQESGDLDNATSMGKESKITISGE 644
            LKKT  K +KGKSIFS    S+E           +G+  S D++N  S+G++ KI  SGE
Sbjct: 588  LKKTFLKFRKGKSIFSGFTSSNEDQSRNFFPPANSGLCMSMDVENTKSVGQDCKIMGSGE 647

Query: 645  RDTASWRSAGFNDSEMEGECATELDNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLI 704
             +TA       ++  MEG  +TE +   +LS   WP+I YDVSSQDVSVHIPLHRLLSL+
Sbjct: 648  PETAK-----SDECLMEGNSSTESEVFRILSSSDWPNIVYDVSSQDVSVHIPLHRLLSLL 702

Query: 705  IQKALRRCYGESAASESADTGAENPLSAVSLDFFGHILGGCHPYGFSAFVMEHPLRIRVF 764
            +QKALRRCYG+     +   G     S++  DFFG +LGGCHP GFSAFVMEHPLR RVF
Sbjct: 703  LQKALRRCYGDPEVRSTTSAGTYTSSSSMYDDFFGRVLGGCHPRGFSAFVMEHPLRNRVF 762

Query: 765  CAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERF 824
            CA+VHAGMWR+NGDAA+ S EWYR+VRWSEQGLELDLFLLQCCAALAPADLYVNRI+ERF
Sbjct: 763  CAEVHAGMWRKNGDAAILSSEWYRSVRWSEQGLELDLFLLQCCAALAPADLYVNRILERF 822

Query: 825  GLSNYLSLNLERPSEYEPILVQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDAT 884
            GLS+Y  L+LE+ SEYEP+LVQEMLTLIIQI+QERRF GLT  E+LKREL+H+L+IGDAT
Sbjct: 823  GLSDYPFLHLEKSSEYEPVLVQEMLTLIIQIIQERRFSGLTPDENLKRELIHKLSIGDAT 882

Query: 885  HSQLVKSLPRDLSKFDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRD 944
             SQLVKSLPRDLSK+D+LQEILD VA+YS+PSGFNQGMYSLRW YWKELD+YHPRW+SRD
Sbjct: 883  RSQLVKSLPRDLSKYDRLQEILDTVAVYSNPSGFNQGMYSLRWMYWKELDLYHPRWNSRD 942

Query: 945  LQVAEERYLRFCSVSALTAQLPRWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNP 1004
            LQVAEERY+R+CSVSALT QLPRW KI+ PL+ +A IA CK+VL++IRAVLFYAVF+D  
Sbjct: 943  LQVAEERYIRYCSVSALTTQLPRWMKIHPPLKGVASIANCKMVLKIIRAVLFYAVFSDKL 1002

Query: 1005 TDSRAPYGVLLTALHLLALALDVCFQKKKSGDQSCDIGGSTPILDFASEEIAEGLNNGAG 1064
            T+ RAP G+L+ ALHLL+L LD+C Q+++ GD S   G S P+L FA EEI EG++ GAG
Sbjct: 1003 TEPRAPDGILIMALHLLSLGLDICLQQREPGDLSLFCGDSIPMLAFAVEEIHEGISYGAG 1062

Query: 1065 KQSLLSLLVFLMGMYKKDGADNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEI 1124
            +QSLLSLLV LM M+K+D  DNF E+  CN+SS+IESLLKKFAE+DS C TKLQQLAPE+
Sbjct: 1063 EQSLLSLLVSLMRMHKRDNLDNFSESDGCNISSLIESLLKKFAELDSGCRTKLQQLAPEV 1122

Query: 1125 VSHLSQSLPRDDTSGSFSASDSEKRKAKARERQAAILEKMKAEQFKFLSSISSNIEDAPK 1184
            V HLSQ  P  D     SASDSEKRKAKARERQAAIL KMKAEQ KFLSSI+S  ED  +
Sbjct: 1123 VIHLSQPSPHSDAHSVGSASDSEKRKAKARERQAAILAKMKAEQSKFLSSINSTNEDDLR 1182

Query: 1185 SAPEVTNYDAEHVSEESVQDVCALCHDPNSRTPVSYLILLQKSRLLSFVDRGSPSWDQDQ 1244
            +  E +N D E   EES QDVC+LCHDPNS+ PVS+LILLQKSRLLS  DRG PSW+Q +
Sbjct: 1183 AGLEESNTDDEQHLEESAQDVCSLCHDPNSKNPVSFLILLQKSRLLSLTDRGPPSWNQAR 1242

Query: 1245 WLGKECGTISANNMVNQFGTNTPSSGLGVISSCQLAQVAEEAVNQFAYNGKPEEVNSVLE 1304
               KE  ++    ++ Q G +  SSGL V SS QL+Q+ + AVN+FA   +P E+ + LE
Sbjct: 1243 RWEKEQVSLMTIKVIEQAGISLSSSGLEVDSSDQLSQLVQNAVNEFAEYAQPGEIINFLE 1302

Query: 1305 FVKAQFPSLRNIPIPFTFSNGRKCTASSMEMFEQDLYLSICREMRKNMTYPDLMKEDEEC 1364
            FV+AQ PSLRNI +P    +G    A S+E  E+D Y+SI +E+  +  +     +D + 
Sbjct: 1303 FVRAQSPSLRNIQVPSPLKDGNDRNACSLETLERDYYISIRKEINNHTIFSSSGLKDVDI 1362

Query: 1365 SVAEGGLKNRGNSDSFLLGKYVASISKEMRENASASEVSRGDRIAAESLV--YDGFGPID 1422
            S  EGGLK+     S LLGKY+A+ S+E+ E+ S+SE S  D    ES +  Y+ FGP D
Sbjct: 1363 SAGEGGLKSNRGVSSVLLGKYIAAFSREITEHPSSSENSLDDIAKRESTLQAYEKFGPAD 1422

Query: 1423 CDGIHLSSCGHAVHQGCLDRYVSSLKERYNRRIIFEGGHIVDPDQGEFLCPVCRQLANSV 1482
            CDG++LSSCGHAVHQGCLDRY+SSLKER+ RR++FEGGHIVDPDQGEFLCPVCR+L+NS+
Sbjct: 1423 CDGVYLSSCGHAVHQGCLDRYLSSLKERFVRRLVFEGGHIVDPDQGEFLCPVCRRLSNSI 1482

Query: 1483 LPALPWDLQRINEQPTVSGVGLSLDSSSSFTTREENTSFQLQQAVSLLQSASNVVGKADV 1542
            LP+LP D QR+ ++P +S V  +      F + E + S  L +A+SLLQSA+N++ K D+
Sbjct: 1483 LPSLPGDFQRVWKEPMISTVSSTDAVGHLFASCEGSDSLWLPRALSLLQSAANMIQKGDI 1542

Query: 1543 IESFPLMKNEIMASNVEAVSRRMCKMYFQNKLDKFFGSARVNPSLIMWDALKYSLMSMEI 1602
             ++FPL +NE M  +++++SR + KMYF ++ DKF  S R N  +IMWD LKYSL+SMEI
Sbjct: 1543 WKTFPLQRNERMKQDLDSISRVLFKMYFPSRQDKFSRSTRANQFMIMWDTLKYSLVSMEI 1602

Query: 1603 AARSEKTSTTPIYDVNALDKELKSSSGFVLSLLLKVVQSMRSKNSLHVLQRFRGIQLFAE 1662
            AARS +   TP Y ++AL KEL+SSSGFVL+LLLK+V S+RSKNSLHVLQRFRGIQLFA+
Sbjct: 1603 AARSGRIHMTPTYSLDALYKELQSSSGFVLALLLKIVHSLRSKNSLHVLQRFRGIQLFAK 1662

Query: 1663 SICSGTSIDNPGGRCKRGGNMLSILKHADVEVSYPDIQFWNRASDPVLARDPFSSLMWVL 1722
            SICSG S D+    C R G+  SILK  + E+ YPDIQFWN+A+DP+L  D FSSLMWVL
Sbjct: 1663 SICSGVSADHASRTCGRKGDASSILKQVEKELPYPDIQFWNQAADPILIHDAFSSLMWVL 1722

Query: 1723 FCLPCQFILCKESLLSLVHVFYAVTLSQAVLSCCGKLQSKVNELGFSDSLISDISKLLGE 1782
            FCLP  F+ C+ESLLSLVH+FY V+++QA+L+  G  Q    + GF D LI+DIS +L E
Sbjct: 1723 FCLPHPFLSCEESLLSLVHIFYLVSIAQAILAIYGPDQYNNRKPGFHDCLITDISHVLEE 1782

Query: 1783 FGSAQEYFVSNYIDPSCDIKDMIRRLSFPYL--------------------RSDMMDSSD 1822
                Q+YFVSN+ID S D  ++IR+LSFPYL                    R D+MD S 
Sbjct: 1783 SEWIQQYFVSNHIDLSSDTMEVIRKLSFPYLRRCALLWKLLSTSASEPFCNRDDVMDRSS 1842

Query: 1823 DALSD-----------LKEIQEVEKMFKIPSLDVILKDEVLRSLVLKWFHHFSKEFEVHR 1871
             A+ D           L E+Q++EK FKIP L+V+LKD+ +RS VLKW HHF  E+EV R
Sbjct: 1843 LAIDDSMDFMDADVIELNEVQKLEKFFKIPQLNVVLKDQEVRSTVLKWLHHFHNEYEVFR 1902

Query: 1872 FQHVLYSTPAVPFKLMCLPHLYQDLLQRYIKQCCSDCKSVLDEPALCLLCGRLCSPSWKP 1931
            FQHVL+ST AVPF LM LPH+YQDLL+RYIKQ C+DCK V +EPALCLLCGRLCSP WKP
Sbjct: 1903 FQHVLHSTTAVPFSLMQLPHVYQDLLERYIKQRCADCKCVFEEPALCLLCGRLCSPHWKP 1962

Query: 1932 CCRESSCQSHAVACGAGTGVFLLIRRTTILLQRCARQAPWPSPYLDAFGEEDIEMHRGKP 1991
            CCRES CQ+HA+ACGAGTGVFLLI+RTTILLQRCARQAPWPSPYLDAFGEEDIEMHRGKP
Sbjct: 1963 CCRESGCQTHAMACGAGTGVFLLIKRTTILLQRCARQAPWPSPYLDAFGEEDIEMHRGKP 2022

Query: 1992 LYLNEER 1998
            LYLNEER
Sbjct: 2023 LYLNEER 2029

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359482107\|ref\|XP_002270537.2\| PREDICTED: E3 ubiquitin-protein ligase UBR2-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449440333\|ref\|XP_004137939.1\| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449483643\|ref\|XP_004156647.1\| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356523153\|ref\|XP_003530206.1\| PREDICTED: E3 ubiquitin-protein ligase UBR3-like [Glycine max]	Back alignment and taxonomy information

>gi\|356567933\|ref\|XP_003552169.1\| PREDICTED: E3 ubiquitin-protein ligase UBR3-like [Glycine max]	Back alignment and taxonomy information

>gi\|357505675\|ref\|XP_003623126.1\| E3 ubiquitin-protein ligase ubr1 [Medicago truncatula] gi\|355498141\|gb\|AES79344.1\| E3 ubiquitin-protein ligase ubr1 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297806169\|ref\|XP_002870968.1\| hypothetical protein ARALYDRAFT_487009 [Arabidopsis lyrata subsp. lyrata] gi\|297316805\|gb\|EFH47227.1\| hypothetical protein ARALYDRAFT_487009 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|224090687\|ref\|XP_002309059.1\| predicted protein [Populus trichocarpa] gi\|222855035\|gb\|EEE92582.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|30679594\|ref\|NP_195851.2\| proteolysis 6 [Arabidopsis thaliana] gi\|332003074\|gb\|AED90457.1\| proteolysis 6 [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		2029
TAIR\|locus:2180147		2006	PRT6 "proteolysis 6" [Arabidop	0.620	0.628	0.529	0.0
DICTYBASE\|DDB_G0283475		2375	DDB_G0283475 "E3 ubiquitin-pro	0.069	0.059	0.375	1.6e-68
UNIPROTKB\|F1P5I1		1737	UBR1 "Uncharacterized protein"	0.121	0.141	0.282	3.9e-64
ZFIN\|ZDB-GENE-081107-29		1730	ubr2 "ubiquitin protein ligase	0.097	0.113	0.338	1.7e-61
UNIPROTKB\|F6X9P0		1753	UBR1 "Uncharacterized protein"	0.122	0.142	0.273	1.8e-61
MGI\|MGI:1861100		1889	Ubr3 "ubiquitin protein ligase	0.063	0.068	0.414	2.1e-61
UNIPROTKB\|E1BCW1		1756	UBR2 "Uncharacterized protein"	0.148	0.171	0.313	3.3e-61
UNIPROTKB\|J9P162		1753	UBR1 "Uncharacterized protein"	0.122	0.142	0.273	4.7e-61
UNIPROTKB\|J9P5Z7		1755	UBR2 "Uncharacterized protein"	0.148	0.172	0.318	9.5e-61
UNIPROTKB\|E1C1D2		1755	UBR2 "Uncharacterized protein"	0.121	0.140	0.297	1.3e-60

TAIR\|locus:2180147 PRT6 "proteolysis 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3253 (1150.2 bits), Expect = 0., Sum P(4) = 0.
 Identities = 682/1288 (52%), Positives = 865/1288 (67%)

Query:    12 PKPRDRIVRRLMNIGVPEEFLDYSGIVNFAKNDKSRIPELVSTILPPDEEVAEVIQDAKA 71
             P   D ++ RL ++GVP+++    G+V F + + ++I ELVS +LP D++V   +++A+ 
Sbjct:    13 PSSHDLVIERLASVGVPKKYRSKRGLVEFVRANPAKISELVSALLPTDDDVKLGLKEARE 72

Query:    72 KNKKVSVGPNMKGRFRESMLWLQWLMFEREPEKVLRKLSKIG--QRGVCGAVWGNNDIAY 129
             + +K +V P MK RFRESM  LQWLMF+ EP+  LR L+K+   QRGVCG+VWG NDIAY
Sbjct:    73 RPRKSAVSPTMKKRFRESMNMLQWLMFQDEPDVSLRNLAKLNLDQRGVCGSVWGQNDIAY 132

Query:   130 RCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYTXXXXXXXXXVTAWKREGFCSRHKGAEQ 189
             RCRTCE+DPTCAICVPCFQNG+H  HDYSIIYT          TAWK +GFCS HKG+EQ
Sbjct:   133 RCRTCENDPTCAICVPCFQNGDHNSHDYSIIYTGGGCCDCGDETAWKPDGFCSNHKGSEQ 192

Query:   190 IQPLPEKYANSAAPVLDALFIYWENKLSLAESVGQENPRASDHVAERRKLANELTFAVVE 249
             I+PL E  ANS  P+LDALF  W NKL  AES GQ+  R++D +   +K++NELTF VVE
Sbjct:   193 IRPLSENLANSVGPILDALFTCWNNKLLSAESSGQKGARSNDTLVILQKMSNELTFIVVE 252

Query:   250 MLLEFCKNSESLLSFVSKRVISVIGLLDILVRAEMFSSDVVVRXXXXXXXXXXGEPIFKY 309
             MLLEF  +SESLLSFVS+R+IS  GLL IL++AE F    V++          G+P+FK 
Sbjct:   253 MLLEFSMSSESLLSFVSRRIISSSGLLSILLKAERFLDQDVMKKLHDLFLKLIGDPVFKC 312

Query:   310 EFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTPRLVKEMNLLEMLL 369
             EFAK F+SYYPV + + +++ +D+  KKYPLLSTFSVQI TVPTLTP LVKEMNLL MLL
Sbjct:   313 EFAKAFVSYYPVVISEVVKQGTDNAFKKYPLLSTFSVQILTVPTLTPFLVKEMNLLAMLL 372

Query:   370 GCLREIFDSCAGDDSCLQVAKWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKAW 429
             GCL +IF SC+G+D  LQ  K   L ET+ RVIGD++FVMSHA VSKYATHE   +S++W
Sbjct:   373 GCLSDIFVSCSGEDGLLQATKLERLCETSERVIGDLKFVMSHAIVSKYATHEHRELSRSW 432

Query:   430 MKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLVDGAFSSAVSEETRY 489
             + LLTF QGMNP KRETGI I EEN+YMHL  VL HSIA I  LLV+G +S+A  EE   
Sbjct:   433 LTLLTFAQGMNPLKRETGIPIDEENDYMHLFFVLGHSIAVIHSLLVNGTYSAASDEEIEN 492

Query:   490 DFSMYKQ-DIGDGDSLRHAKVGRLSQESSVCGAMGRSSLSASTLKADDVIFDAVSDVLLP 548
             D +  ++ D  DGD  R+AKVGRLS E SVC A+  SS   S++ ++    D     LLP
Sbjct:   493 DRNAKEEFDKCDGDGERYAKVGRLSHEDSVCTAIVSSSSFDSSMASEVHKIDPFH-ALLP 551

Query:   549 HSVTWVAHECLRAMENWLGVDDRSVSVNDILSPNASR-ISGSNFVAXXXXXXXXXXXXXX 607
              S  ++  ECL+ +E  LG D+        LS ++ R I  S                  
Sbjct:   552 SSAIYLIRECLKVLETCLGNDEGISKFLCKLSSSSGRNIPESKMSWPRRDLLNVETGGSV 611

Query:   608 FSRLAGSS-EVTAGIQE-SGDLDNATSMGKESKITISGERD-TASWRSAGFNDSEMEGEC 664
              S LA SS + + G+    GD+    S+          + D TA  +    N +++    
Sbjct:   612 SSNLASSSRDPSTGLSPLCGDIQTNLSLDNVCGPYGVVQTDVTADSKRVSCNSADLTKNA 671

Query:   665 ATELDNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADT 724
             +     L +L LC WPDI YDVSSQ +SVH+PLHRLLSL+IQKALR CYGESA+      
Sbjct:   672 S----GLRILGLCDWPDIHYDVSSQAISVHLPLHRLLSLLIQKALRICYGESASYNGVSI 727

Query:   725 GAENPLSAVSLDFFGHILGGCHPYGFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSC 784
               E P +    DFF  ++G  HP GFSA VMEH L+IRVFCAQV AGMW++NGD+AL SC
Sbjct:   728 SHEIPHA----DFFSSVIGDFHPCGFSALVMEHVLQIRVFCAQVIAGMWKKNGDSALVSC 783

Query:   785 EWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGLSNYLSLNLERPSEYEPIL 844
             EWYR+VRWSEQGLELDLFLLQCCAALAPAD YV++++ RFGLS+YLSLN +  +EYEP+L
Sbjct:   784 EWYRSVRWSEQGLELDLFLLQCCAALAPADSYVDKLLSRFGLSSYLSLNPDITNEYEPVL 843

Query:   845 VQEMLTLIIQILQERRFCGLTTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQLQE 904
             VQEML L+IQILQERRFCGL+TAESL+RE++ +LA GD THSQLVKSLPRDLSK D+LQE
Sbjct:   844 VQEMLGLLIQILQERRFCGLSTAESLRREIIFKLATGDFTHSQLVKSLPRDLSKSDELQE 903

Query:   905 ILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLRFCSVSALTAQ 964
             +LD V++Y +PSG NQG YSL+ S WKELD+YHPRW SRDLQ AEER+ R+C VSALT Q
Sbjct:   904 VLDDVSVYCNPSGMNQGKYSLQSSCWKELDLYHPRWQSRDLQSAEERFSRYCGVSALTTQ 963

Query:   965 LPRWTKIYYPLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVXXXXXXXXXXX 1024
             LPRW  IY PL+ +A I TCK   Q+I + L+YA+ +     SRAP GV           
Sbjct:   964 LPRWRMIYPPLKGLARIGTCKATFQIISSALYYALQSGTSVKSRAPDGVLITALQLLSLS 1023

Query:  1025 XDVCFQKKKSGDQSCDIGGSTPILDFASEEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGA 1084
              D+C Q+++S  Q C +  S PIL+ A  EI  G+  G  K+SLLSLLV LM     DG 
Sbjct:  1024 LDICTQQRQSNSQDCCLENSIPILELAGLEII-GIAQGTEKESLLSLLVSLMKTRMGDGR 1082

Query:  1085 DNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHLSQSLPRDDTSGSFSAS 1144
               F E G+CN+SS I +LLKKF+ IDS CM  LQ LAPE+V    QS    D   S S S
Sbjct:  1083 HQFPEPGSCNISSWIGNLLKKFSAIDSVCMNLLQSLAPEVVG---QS--GFDKVMSGSTS 1137

Query:  1145 DSXXXXXXXXXXXXXILEKMKAEQFKFLSSISSNIEDA-PKSAPEVTNYDAEHVSEESVQ 1203
             D              I+ KMKAEQ KFLS++SS+++D  P+S  E ++   EH SE +V+
Sbjct:  1138 DEKRKAKAKERQAA-IMAKMKAEQSKFLSTLSSSMDDDDPRSEFETSDSVMEHDSEIAVR 1196

Query:  1204 DVCALCHDPNSRTPVSYLILLQKSRLLSFVDRGSPSWDQDQWLGKECGTISANNMVNQFG 1263
             +VC+LCHDP+S+ PVS+LI LQKS+LLSFVDRG PSWDQ     K+     A +++    
Sbjct:  1197 EVCSLCHDPDSKDPVSFLIFLQKSKLLSFVDRGPPSWDQCPQSEKKISVDGAPDLLRM-- 1254

Query:  1264 TNTPSSGLGVISSCQLAQVAEEAVNQFA 1291
              N  S  L  ISS  + Q++++ +++ A
Sbjct:  1255 -NASSDSLR-ISSPLMLQLSDDTISESA 1280

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0006723 "cuticle hydrocarbon biosynthetic process" evidence=IMP

GO:0010025 "wax biosynthetic process" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010029 "regulation of seed germination" evidence=IMP

GO:0050994 "regulation of lipid catabolic process" evidence=IMP

DICTYBASE\|DDB_G0283475 DDB_G0283475 "E3 ubiquitin-protein ligase UBR3" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|F1P5I1 UBR1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-081107-29 ubr2 "ubiquitin protein ligase E3 component n-recognin 2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F6X9P0 UBR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:1861100 Ubr3 "ubiquitin protein ligase E3 component n-recognin 3" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BCW1 UBR2 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P162 UBR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P5Z7 UBR2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C1D2 UBR2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		2029
pfam02207		71	pfam02207, zf-UBR, Putative zinc finger in N-recog	2e-29
smart00396		71	smart00396, ZnF_UBR1, Putative zinc finger in N-re	2e-21

>gnl\|CDD\|216929 pfam02207, zf-UBR, Putative zinc finger in N-recognin (UBR box)	Back alignment and domain information

 Score =  112 bits (282), Expect = 2e-29
 Identities = 38/70 (54%), Positives = 44/70 (62%), Gaps = 1/70 (1%)

Query: 117 VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYT-GGGCCDCGDVTAW 175
           VCG V+ +    YRC TC  DPTC IC  CF    HK HD   +++  GGCCDCGD  AW
Sbjct: 2   VCGYVFKSGQPVYRCLTCSLDPTCVICYECFSISCHKGHDVVELFSKRGGCCDCGDPEAW 61

Query: 176 KREGFCSRHK 185
           K+EGFC  HK
Sbjct: 62  KKEGFCKLHK 71

This region is found in E3 ubiquitin ligases that recognise N-recognins. Length = 71

>gnl\|CDD\|197698 smart00396, ZnF_UBR1, Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		2029
KOG1140		1738	consensus N-end rule pathway, recognition componen	100.0
KOG1139		784	consensus Predicted ubiquitin-protein ligase of th	99.96
KOG1140		1738	consensus N-end rule pathway, recognition componen	99.82
smart00396		71	ZnF_UBR1 Putative zinc finger in N-recognin, a rec	99.78
PF02207		71	zf-UBR: Putative zinc finger in N-recognin (UBR bo	99.73
KOG1139		784	consensus Predicted ubiquitin-protein ligase of th	99.03
PF10390		284	ELL: RNA polymerase II elongation factor ELL ; Int	97.01
KOG1777		625	consensus Putative Zn-finger protein [General func	94.87
PF13639		44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	91.22
cd00162		45	RING RING-finger (Really Interesting New Gene) dom	91.15
KOG4445		368	consensus Uncharacterized conserved protein, conta	90.35
KOG0943		3015	consensus Predicted ubiquitin-protein ligase/hyper	89.89
PF13764		802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	89.72
cd02335		49	ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present	85.41
KOG4796		604	consensus RNA polymerase II elongation factor [Tra	85.11
cd02340		43	ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre	85.02
cd02249		46	ZZ Zinc finger, ZZ type. Zinc finger present in dy	83.67
PF00097		41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	82.69
smart00184		39	RING Ring finger. E3 ubiquitin-protein ligase acti	80.82
cd02338		49	ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre	80.78
KOG2905		254	consensus Transcription initiation factor IIF, sma	80.12

>KOG1140 consensus N-end rule pathway, recognition component UBR1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=2e-126  Score=1253.90  Aligned_cols=1280  Identities=22%  Similarity=0.338  Sum_probs=813.6

Q ss_pred             HHhccCCCCHHHHHHHHHHHH-HhhCChhhHHHHHHHHHhhhHHHHHHHHHhccCcccccCCccceeeeeccccCCcHHH
Q 000151          279 LVRAEMFSSDVVVRKLHELLL-KLLGEPIFKYEFAKVFLSYYPVFVKDAIREHSDDTIKKYPLLSTFSVQIFTVPTLTPR  357 (2029)
Q Consensus       279 ll~~d~~L~k~~r~~lh~Lll-sLL~d~efK~~fA~~Fv~~Y~~i~~~fl~~d~d~~~~~~s~v~~LSVQLFTvPSLA~~  357 (2029)
                      ++..|..+||..|..++.++. .+-++.++|+.||.+|+.+|..+..+|+.+|++..   .+.| .++||+||+|++|..
T Consensus       368 il~~d~~~~kr~r~~l~k~~~~~~~~~~~~k~~~~~~~~~~y~~~~~~~~~~d~e~~---~~vi-~~~vqf~t~~~~a~~  443 (1738)
T KOG1140|consen  368 ILLFDNRYWKRLRKDLQKVIIPTFASSNLYKPIFAQQFVEHYNSITRDFAYMDREPD---LSVI-ELSVQFFTCPSLAKN  443 (1738)
T ss_pred             HHHHHHHHHHHHHHHHhhcceeehhcchHHHHHHHHHHHHHHHHHHHHHHhhcCCcc---hhhH-hheeeeecCcHHHHH
Confidence            444566678999999999999 67789999999999999999999999999988743   3545 999999999999999


Q ss_pred             HHHhhcHHHHHHHHHHHHhhhhcCCCCcceec---------cccccccchhhhhhhhhHhhcchhhhHHHhhhchHHHHH
Q 000151          358 LVKEMNLLEMLLGCLREIFDSCAGDDSCLQVA---------KWANLYETTNRVIGDIRFVMSHAAVSKYATHEQLNISKA  428 (2029)
Q Consensus       358 LV~e~nLL~iLl~tl~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~I~~DLrylLsh~~v~~~l~~~~~~l~~~  428 (2029)
                      +++...++..+..++..++..+...++.....         +.....++.+..+.|+ +.+.++.+     -.++..+..
T Consensus       444 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~r~l~~~~~l-~~~~~~~~-----~~~~~~~~~  517 (1738)
T KOG1140|consen  444 IVENQSFLDIVWSIIDIFKEFNKVEGGVLIDIRVQKSNLLKRYSISFRRTLYTFEDL-SKVHDPNI-----PLRPKEFIS  517 (1738)
T ss_pred             hhhhccchHHHHHHHHHHHHhcccccceecceeeeechhhhHHHHHHHHHHHHHHHh-hccCCccc-----cccHHHHHH
Confidence            99999988877777766664444322221111         1122357777788888 77777762     357899999


Q ss_pred             HHHHHHHhcCCCcccccccCcceeeCCceeehhhhhhHHHhhHHhhhhhccccccccccccccccccccCCCCCcccccc
Q 000151          429 WMKLLTFVQGMNPQKRETGIHIREENEYMHLPLVLDHSIANIQPLLVDGAFSSAVSEETRYDFSMYKQDIGDGDSLRHAK  508 (2029)
Q Consensus       429 ~l~lLs~~QGMnp~kRq~~~HVEyE~e~w~~aF~L~~~la~i~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (2029)
                      ++.++..||||.|++|+.++||++|++ |+.+|.+-.++..++++++.||..++.                         
T Consensus       518 ~l~~~~v~qg~~~lkr~~~ehv~~e~~-~~~~~~~v~~~t~~~s~i~~~~~~~ep-------------------------  571 (1738)
T KOG1140|consen  518 LLLLLKVFQGVDPLKREELEHVEVEKE-WENFFSLVEYLTAIYSMIQSLVKTSEP-------------------------  571 (1738)
T ss_pred             HHHHHHHhCCccHHHHHHhhhhcccch-HHHHHHHHHHHHHHHHHHHHHHHhccc-------------------------
Confidence            999999999999999999999999997 999999999999999999998866530                         


Q ss_pred             ccccccccccccccCCCcccccccccccccccccccccchhhHHHHHHHHHHHHHhhhcCCCCcccccccCCCCcccccC
Q 000151          509 VGRLSQESSVCGAMGRSSLSASTLKADDVIFDAVSDVLLPHSVTWVAHECLRAMENWLGVDDRSVSVNDILSPNASRISG  588 (2029)
Q Consensus       509 v~r~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~cl~~l~~~l~~~~~~~~~~~~~s~~~~~~~~  588 (2029)
                      +-                                         ..+++.|+.++....      ..              
T Consensus       572 ~~-----------------------------------------~~~~~~l~~~~~r~~------~s--------------  590 (1738)
T KOG1140|consen  572 VK-----------------------------------------DSVYKKLLEAAIRIH------PS--------------  590 (1738)
T ss_pred             hh-----------------------------------------hhHHHHHHHHHhhcc------cc--------------
Confidence            00                                         001112222222110      00              


Q ss_pred             chhhhhHhhhhhccccccccccccCCccccccccccCCCccccccCccccccccCCcccccccccCcCCccccccchhcc
Q 000151          589 SNFVALKKTLSKIKKGKSIFSRLAGSSEVTAGIQESGDLDNATSMGKESKITISGERDTASWRSAGFNDSEMEGECATEL  668 (2029)
Q Consensus       589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  668 (2029)
                                            ++++                     +.   +               -..+++++.   
T Consensus       591 ----------------------~~~~---------------------~~---l---------------~~~i~~~S~---  606 (1738)
T KOG1140|consen  591 ----------------------LTGS---------------------ES---L---------------TYTICGESH---  606 (1738)
T ss_pred             ----------------------cCcc---------------------ce---e---------------eehhhhhhH---
Confidence                                  0000                     00   0               001223322   


Q ss_pred             ccccccccCccCceeeeccCCceeeehHHHHHHHHHHHHHHhhhccccccccccccCCCCCccccchhhhhcccCCCCCC
Q 000151          669 DNLHVLSLCYWPDITYDVSSQDVSVHIPLHRLLSLIIQKALRRCYGESAASESADTGAENPLSAVSLDFFGHILGGCHPY  748 (2029)
Q Consensus       669 ~~~~~~~~~~~~~v~fdVs~~~VSfH~PLhr~Ls~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  748 (2029)
                                 .++.|+|+.++||||+|+.|+|+++++.......                   ...+.+ ..+.+++. 
T Consensus       607 -----------e~i~f~v~~~~~sv~~p~~~~l~~l~~~~~s~v~-------------------~~~d~~-~~~~~~~n-  654 (1738)
T KOG1140|consen  607 -----------ETINFSVSQERVSVSNPVSRLLAFLIELSCSSVV-------------------SLKDAY-ERLEDCSN-  654 (1738)
T ss_pred             -----------hHhhhccccccceeeccHHHHhhhhhhcccchhh-------------------hcchhh-hhHhhhcc-
Confidence                       5789999999999999999999999853211001                   111111 11122222 


Q ss_pred             CcchhhccccHHHHHHHHHHhcCcccccchHHhHHHHHhccccccccccchhhHHHHHHHhccChHHHHHHHHHHhcccc
Q 000151          749 GFSAFVMEHPLRIRVFCAQVHAGMWRRNGDAALSSCEWYRAVRWSEQGLELDLFLLQCCAALAPADLYVNRIIERFGLSN  828 (2029)
Q Consensus       749 ~~~~~l~e~pLR~~Vl~aQI~aGmWvRNG~si~~Q~~~Y~~~~~re~~~d~DifLLQ~~a~~~dp~~fl~~il~RF~L~~  828 (2029)
                        ..+|.|||||++|++|||.+|||||||+++.+|+.||++.+||+++|++||+++|.++++.||+.|+.++++||+|.+
T Consensus       655 --~~~i~e~~lr~~Vl~aqid~~~w~rNG~si~~q~~~y~~~~~r~~~y~~DI~~~Q~~la~~d~~~~l~~~l~r~~L~~  732 (1738)
T KOG1140|consen  655 --FLAISEHSLRVLVLCAQIDVGFWVRNGFSILHQAAYYKNNPCRNESYDRDILMLQTGLAMEDPNRFLFTILSRFELLD  732 (1738)
T ss_pred             --chhhcccchhheeeeeecceeeEeecCcchhhhhHhhcCccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence              257899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCC-ch---hHHHHHHHHHHHHhhcccccCCC---ChHHHHHHHHHHHHhcCCCChHHHHhhCCCCCCCcch
Q 000151          829 YLSLNLERPSE-YE---PILVQEMLTLIIQILQERRFCGL---TTAESLKRELVHRLAIGDATHSQLVKSLPRDLSKFDQ  901 (2029)
Q Consensus       829 w~~~~~~~~~~-y~---~~mvEe~L~lLI~llteR~~~g~---s~~e~lrrEIIh~Lc~~p~t~S~L~~~lpe~~~~~~~  901 (2029)
                      |++|....... ++   ..|+|+|+.+||.|++||...|+   +..+.+|+||||+||++|++||+|.+++|++++++..
T Consensus       733 w~~g~~~~~~~d~~~~i~~~~ee~l~lii~ll~Er~~~~~~kv~~~d~~k~~iIh~L~~~~lays~lv~s~~~dl~~~l~  812 (1738)
T KOG1140|consen  733 WFTGEVDYQSNDTEDTISFMIEEFLALIILLLTERSYFGSSKVRRMDIIKSEIIHILCFKPLSYSQLVRKIPHDLTKTLS  812 (1738)
T ss_pred             HhcCCCccccccHHHHHHHHHHHHHHHHHHHHHheeecccccccHHHHHHHHHHHHHHhcchhHHHHHHhchhhhhhccc
Confidence            99998654332 22   37999999999999999997554   5778999999999999999999999999999999999


Q ss_pred             HHHHHHHHccccCCCCC-CcceEEeehhhcccccccccccCchhHHHHHHHHHH--hhc---cccccCCC-CCCcccCC-
Q 000151          902 LQEILDAVAMYSHPSGF-NQGMYSLRWSYWKELDIYHPRWSSRDLQVAEERYLR--FCS---VSALTAQL-PRWTKIYY-  973 (2029)
Q Consensus       902 fe~iL~eVA~f~~P~g~-~~G~Y~LK~e~~~e~Dpy~~~y~~~~~q~aeer~~r--~~k---~~a~~~~~-P~~~~~~~-  973 (2029)
                      ||.++++||+|++|.|+ +.|+|+||++||+++||||+||+++++.+++..+++  .++   ..|..+++ |++.+.+. 
T Consensus       813 ~d~~~e~Va~~~~p~~~~~~gvf~lK~~~~~~~dpy~~~~s~s~q~~se~~~~k~~~~~~k~~~A~~~~i~~~~~~ll~~  892 (1738)
T KOG1140|consen  813 FDEALEEVAVFKKPKGLADNGVFVLKESYYDEVDPYYKHLSKSEQSESEATIRKSRLAKKKDVIALVPPILPKFIKLLKK  892 (1738)
T ss_pred             chHHHHHHHhhccCCccccceEEEechhhhhhcCchhhhhhHhHHhhhhHHHHHHHHHHhhccccccCCCcHHHHHHHHH
Confidence            99999999999999999 789999999999999999999999999888775543  211   12444332 33333221 


Q ss_pred             CccccccccccHHHHHHHHHHHHHHhccCCCCCCCCchhHHHHHHHHH-HHHHhhhhhcccCCCCCcccCCCcccccchh
Q 000151          974 PLESIAGIATCKVVLQVIRAVLFYAVFTDNPTDSRAPYGVLLTALHLL-ALALDVCFQKKKSGDQSCDIGGSTPILDFAS 1052 (2029)
Q Consensus       974 pf~~i~~il~s~~~~~il~~vL~~al~~~~~~~~~~~E~~L~~~LHLi-~laL~~~~~e~~~~~~~~~~~~~~p~~~~~~ 1052 (2029)
                      .+.++.+.+...+|-.||+.++.++.+..       .+.++..++|++ ++|++.+..--.           |.+.- ++
T Consensus       893 ~~~~L~~~t~~~~~~~ii~r~~~~~~~~~-------s~~~l~~~~~~ihG~~~~~~l~~~~-----------~~~~~-~~  953 (1738)
T KOG1140|consen  893 GADILGAAVRLTVFGLIIYRTLEHCLFME-------SSTLLSKVLHLIHGIALNEELINMK-----------FAFTQ-KT  953 (1738)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhcc-----------ccccc-cc
Confidence            23556666667778888888888877654       488999999555 999986443111           10000 00


Q ss_pred             hHHhhccCCCCCcccHHHHHHHHHhhhcccCCccccccccCCchhHHHHHHHHHHhhhHHHHHHHhhhchhhhhcccCCC
Q 000151         1053 EEIAEGLNNGAGKQSLLSLLVFLMGMYKKDGADNFLEAGNCNLSSVIESLLKKFAEIDSRCMTKLQQLAPEIVSHLSQSL 1132 (2029)
Q Consensus      1053 ~~~~~~~~~~~~~~Sll~LL~~L~~~~~~~~~~~~~~~~~~~i~~~I~~lL~~f~~~~~~c~~~l~~~~p~~~~~~~~~~ 1132 (2029)
                      +        ....++.+.+++.+..++....+           +.++.|+++.|..+..     .+...|++.. .... 
T Consensus       954 e--------~~~~e~gl~~~e~lv~~~~~~~~-----------~~~~~v~~~l~~~~~~-----~~~n~~ea~~-~~~~- 1007 (1738)
T KOG1140|consen  954 E--------SIAREKGLSLYESLVRKPDSLVH-----------GKIIEVIVELFESLIK-----SRANDPEVAN-DEKD- 1007 (1738)
T ss_pred             c--------ccccccchhhHHHhhhcchhhcC-----------CcceeeeHHHHhhhhh-----hhcCCccccc-cccc-
Confidence            1        11345577778877777554332           4567888888776544     2344443321 1100 


Q ss_pred             CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccCCCCCCCccCCCCcccccccccCCCcccccCC
Q 000151         1133 PRDDTSGSFSASDSEKRKAKARERQAAILEKMKAEQFKFLSSISSNIEDAPKSAPEVTNYDAEHVSEESVQDVCALCHDP 1212 (2029)
Q Consensus      1133 ~~~~~~~~~~~~e~ekkK~~AkeRQakIMaqf~~qQ~~Fl~~n~~~~~~~d~~~~e~~~s~~~~~~~e~~~~~CilCqe~ 1212 (2029)
                      .....+.+.++.+.++||++|++||+|+||||+.||.+||++|.+++|++++.   .+++...+..  .....|.+|+..
T Consensus      1008 ~~~~~~~s~~~~e~~rk~rlA~~r~~k~m~k~s~qq~kfm~~~e~e~d~~~~~---~~~~~~~~~~--~~d~~~~~~~~~ 1082 (1738)
T KOG1140|consen 1008 KKEKQSVSLDEEEKERKKRLARERQKKLMAKFSNQQTKFMAENEDEFDEQENQ---TPSSGSKTYE--EEDFTCALCQDN 1082 (1738)
T ss_pred             cccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccccCccccc---Cccccccchh--hhhccchhhhcc
Confidence            01112234444556788889999999999999999999999997665544321   1111101111  114567777643


Q ss_pred             CC-CCCeEEEEeeecccccccccCCCCCCcccccccccccccccccccccCCCCCCCCCCCcchhhhHHHHHHHHHhhhc
Q 000151         1213 NS-RTPVSYLILLQKSRLLSFVDRGSPSWDQDQWLGKECGTISANNMVNQFGTNTPSSGLGVISSCQLAQVAEEAVNQFA 1291 (2029)
Q Consensus      1213 ~~-~~pfG~la~iq~S~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~a~~~~~ 1291 (2029)
                      +. +.++      |++..+...                                                          
T Consensus      1083 s~~~~~~------~~~~~~~~~---------------------------------------------------------- 1098 (1738)
T KOG1140|consen 1083 SCTDFQV------KPASHLVKP---------------------------------------------------------- 1098 (1738)
T ss_pred             chhcccc------ccchhhhcc----------------------------------------------------------
Confidence            22 1122      222221100                                                          


Q ss_pred             cCCCchhhhhHHHHhhhcCCCCcCCCCCcCcCCCCcCCcchhhhhhhhhhhHHHHhhhccCCCCCCccccchhhhccCCc
Q 000151         1292 YNGKPEEVNSVLEFVKAQFPSLRNIPIPFTFSNGRKCTASSMEMFEQDLYLSICREMRKNMTYPDLMKEDEECSVAEGGL 1371 (2029)
Q Consensus      1292 ~~~r~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~s~~~~~e~~~~~~~~~~~ 1371 (2029)
                                                                     ..-+||.|            ++++.+..     
T Consensus      1099 -----------------------------------------------~~~~~~i~------------~e~e~~~~----- 1114 (1738)
T KOG1140|consen 1099 -----------------------------------------------IFRECIIC------------DENEDVPN----- 1114 (1738)
T ss_pred             -----------------------------------------------cccccccC------------ChhccCCC-----
Confidence                                                           01123444            23333321     


Q ss_pred             cCCCCCccchhhhhhhhhhHHhhhcccccccccccccccccccCCCCCC-CcCCCccccccChHhhHHHHHHHHHHHHHh
Q 000151         1372 KNRGNSDSFLLGKYVASISKEMRENASASEVSRGDRIAAESLVYDGFGP-IDCDGIHLSSCGHAVHQGCLDRYVSSLKER 1450 (2029)
Q Consensus      1372 ~~~~~~~~~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~gF~~-~~~~gvh~ssCGH~MH~~C~~~Y~~Sl~~r 1450 (2029)
                         ..++.++..+|+++ ++.                    +..+++.| ....|+++|+|||.||+.||++|+.+.+.|
T Consensus      1115 ---~~~~~~v~~~f~~~-s~~--------------------~sd~l~~p~~~~~~~~~s~c~h~mh~~c~~~~~~a~r~~ 1170 (1738)
T KOG1140|consen 1115 ---WDGRYSVSSAFAQK-SDD--------------------VSDALTEPGSLSCGTVLSSCGHHMHYGCFKRYVQAKRFR 1170 (1738)
T ss_pred             ---ccccchhhhHhhhh-ccc--------------------ccccccCCCCCcccceeeccCCcchHHHHHHHHHHHHHH
Confidence               11233466777776 221                    12334434 556899999999999999999999999999


Q ss_pred             hhccccccCCcccCCCCcccccccccccccceecCCCCCcccCCCCCcccCCCCCCCCCCccccccchhhHHHHHH----
Q 000151         1451 YNRRIIFEGGHIVDPDQGEFLCPVCRQLANSVLPALPWDLQRINEQPTVSGVGLSLDSSSSFTTREENTSFQLQQA---- 1526 (2029)
Q Consensus      1451 ~~~r~~~er~h~~d~e~gEFLCPLCksL~Ns~LPilp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 1526 (2029)
                      .+++..+.+.|.-  ++|+|+||+||+|+|+++|..++.....++ .+.              ........|++..    
T Consensus      1171 ~n~~~~~l~~~~s--e~~l~lCp~c~slsn~~lp~~~~~~~~~n~-~t~--------------~~~~n~~~~i~~rs~~~ 1233 (1738)
T KOG1140|consen 1171 ENARTAPLCQHYS--ENGLFLCPLCKSLSNVSLPMFLPPELLLNP-LTL--------------ENQRNLNSWIEKRSRAS 1233 (1738)
T ss_pred             HHhhhcCcccccc--cCCcccCCchHhhhhccCCcCCchhhhcCh-hhh--------------hchHHHHHHHHHhchhh
Confidence            9987765555543  899999999999999999987543332221 000              0011222333310    


Q ss_pred             --Hhhhhh---ccc-cccc---ccccccCCcchhhHHHHHHHHHHHHHHHHhhccc------cccccCCCCCChhHHHHH
Q 000151         1527 --VSLLQS---ASN-VVGK---ADVIESFPLMKNEIMASNVEAVSRRMCKMYFQNK------LDKFFGSARVNPSLIMWD 1591 (2029)
Q Consensus      1527 --~~~l~s---~~~-~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~------~~~~~~~~~~~~~~~l~~ 1591 (2029)
                        +..+.+   ... ...+   .++.+..-.++.+.....++.+.+.+....+..+      .....+.++. .....|-
T Consensus      1234 ~s~~~vs~~~s~~~~~~~ss~i~e~kp~~~~~l~~~~~~~ie~~~k~v~s~~~k~~~~i~~~~le~~~~~~~-~~~~~~~ 1312 (1738)
T KOG1140|consen 1234 FSLQDVSSILSDPWAAFTSSRIPELKPILIMDLPDSVVEQIELFQKIVGSAMFKPSSLLSTNTLELTLFSRE-FLIVCWQ 1312 (1738)
T ss_pred             cchhhhhhhhcccchhhccccccccccchHhhhhhHHHHHHHHHHHHHhhheeecccceeecccccCcccch-hhhhhhh
Confidence              000000   000 0000   0010000001222222222323333222222111      1122234443 4567788


Q ss_pred             HHhHhHHHHHHHhhccCCCCCCcchhhhHHHHhhcchhhHHHHHHHHHhhhcccchhHHHHHhh---hhhhhhhhhcCCC
Q 000151         1592 ALKYSLMSMEIAARSEKTSTTPIYDVNALDKELKSSSGFVLSLLLKVVQSMRSKNSLHVLQRFR---GIQLFAESICSGT 1668 (2029)
Q Consensus      1592 tl~YTi~s~Eia~Rg~~~~~~~~~~l~~L~~~l~s~~~~il~~l~~~~~~~r~~~~l~~l~r~~---~~~Ll~~si~~~~ 1668 (2029)
                      .+++..+++++.+=+.+.+         ++..+.+...+.++...++....    +...++..+   .+++|...+.+  
T Consensus      1313 ~~s~a~~~~~~~l~~~~~~---------~~l~l~~~~~~~~~~~~~l~~~~----~~~~l~~~~~~~llk~~s~~~~~-- 1377 (1738)
T KOG1140|consen 1313 SLSDAEQSTKLLLSASKKP---------SFLKLNEDMTFCLVTISRLRALH----WEQILYELVYTFLLKSFSPTIPR-- 1377 (1738)
T ss_pred             ccchHHHHHHHHHhccCCc---------ccccCchhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhcCCc--
Confidence            8888888877665443332         11111122222222222222211    122222211   11222211100  


Q ss_pred             CCCCCCCCcCCCCccccccccccccCCcchhhhhcccCCCccccCchhhHHHHHhhccccccccccchhhHHHH-HHHHH
Q 000151         1669 SIDNPGGRCKRGGNMLSILKHADVEVSYPDIQFWNRASDPVLARDPFSSLMWVLFCLPCQFILCKESLLSLVHV-FYAVT 1747 (2029)
Q Consensus      1669 s~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~plL~~D~F~~Lv~~~~~lp~p~~s~~~~~~~iv~l-~y~a~ 1747 (2029)
                                       |.. +. .   +  +..+...--.+..|.+..+- ....++    ...-....++++ ..+++
T Consensus      1378 -----------------i~~-~~-t---p--d~~~~~ll~~l~~~~~~~~~-l~~~~~----~~~~~~~~~~~~~i~~~~ 1428 (1738)
T KOG1140|consen 1378 -----------------ISV-LI-T---P--DQPENELLVILPHDFPKSLE-LELTLD----FVNKNPKKIFELKILMAS 1428 (1738)
T ss_pred             -----------------chh-cc-C---C--CCCcchhhhccchhhhhhcc-HHHHHH----HhhhhHHHHHhHHHHHHH
Confidence                             000 00 0   0  00000000011111111110 000001    111233344444 55666


Q ss_pred             HHHH-HHHhhcccccc--cccccc-hhhHHHHHHHHhcccccccccccccCCCChhhHHHHHHHhhhhhhcc-----ccc
Q 000151         1748 LSQA-VLSCCGKLQSK--VNELGF-SDSLISDISKLLGEFGSAQEYFVSNYIDPSCDIKDMIRRLSFPYLRS-----DMM 1818 (2029)
Q Consensus      1748 ivQ~-ll~~~~~~~~~--~~~~~~-~d~l~~~i~~~~~~~~~~~~~~~s~~~~~~~~i~~~v~k~~lPFLRr-----h~~ 1818 (2029)
                      ++|. +++.......+  .++... .+... .+...+-.....++......+-....++..+++.++|||||     |++
T Consensus      1429 i~s~elits~s~l~~d~~~~~~q~s~~e~~-~~~t~l~~~~s~~~i~~~~~~~~~~~L~~~~~~~i~sfL~~~al~~h~l 1507 (1738)
T KOG1140|consen 1429 IISIELITSHSYLENDLEMAEEQKSIDEFK-SLLTYLLQLESSRTIPKLADIRLRLSLCLSCEAGILSFLRRAALFKHLL 1507 (1738)
T ss_pred             hhhhhhheeccccCCccchhhhhhhHHhHh-HHHHHHHhccchhhCccccchhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            6666 34332221111  011110 11111 01110111111000000000111236888899999999999     666


Q ss_pred             CCCCCcc-----C-ChhHHHHHHHhcCCCChHHHhhh---HHHHHHHHHHhhcccccchhhccccccccCCCCcccccCC
Q 000151         1819 DSSDDAL-----S-DLKEIQEVEKMFKIPSLDVILKD---EVLRSLVLKWFHHFSKEFEVHRFQHVLYSTPAVPFKLMCL 1889 (2029)
Q Consensus      1819 ~~~~~~~-----~-e~~E~d~L~~~L~LPsl~~ll~~---~~~~~li~~W~~h~~~~~~~~~~~~~~~~~~~~~~~Li~L 1889 (2029)
                      .++..+.     + ..++...|++|+++|++...+.+   +.++.++.+||.-.........+.......|..+..|+.|
T Consensus      1508 n~v~~p~~~f~~~~~~s~~e~L~ty~slp~l~~~~~q~~~delr~~~~~~~~~~~~lk~~~~~~~~~~i~~r~~~~l~~l 1587 (1738)
T KOG1140|consen 1508 NNVFPPFGAFLDPSSNSELEHLCTYLSLPNLQACLLQSSGDELRQAIERWCGGTENLKREEHYLNTLSINPRIPNSLVEL 1587 (1738)
T ss_pred             hcCCCchhhccCcccchhhhhhcccccCccHHHHHHhhhHHHHHHHHHHhhccchHHHHHHhhcceeeecCCCCCccccC
Confidence            6654332     1 13589999999999988876533   6788999999764221111111111122335557799999


Q ss_pred             chhHHHHHHHHhhcccCCCCCCC-CCceeeecccccccCCCCcccCC-------CcchHhhhhcCCCeeEEEEecccEEE
Q 000151         1890 PHLYQDLLQRYIKQCCSDCKSVL-DEPALCLLCGRLCSPSWKPCCRE-------SSCQSHAVACGAGTGVFLLIRRTTIL 1961 (2029)
Q Consensus      1890 P~~~~~l~~~~~~~~C~~c~~~~-~~paiCL~CG~~~~~~~~~cc~~-------g~c~~H~~~Cg~g~GiFl~v~~~~il 1961 (2029)
                      |+.|+.+++++....|++|+..+ ..|++||+||..+|.+ +.||++       |+|++||..||+++||||.+++|.++
T Consensus      1588 pd~~s~lI~s~~~~~c~~~~~~~s~~p~lCl~cg~~~~~q-~~~~~~~~~~~~~g~~~~ha~~c~~~vgifl~v~~c~~~ 1666 (1738)
T KOG1140|consen 1588 PDEYSCLINSASFFFCPKSGKDDSIIPALCLLCGSEECGQ-SGFDQEGSNGESVGACTAHAAECTGAVGIFLRVRECSIL 1666 (1738)
T ss_pred             CchhhhhHHhhhcccCcccCCccccCchHHhhcchHHhhh-hhhhhccccccchHHHHHhHHhhcceeceEEeeechhhh
Confidence            99999999999999999999986 8999999999987775 578843       89999999999999999999999999


Q ss_pred             EEcc--CCCccCCCCcccCCCCCCCCCCCCCCcccCHHHHHHHHHHHHhCCccccccccccc
Q 000151         1962 LQRC--ARQAPWPSPYLDAFGEEDIEMHRGKPLYLNEERYAALTYMVASHGLDRSSKVLSQT 2021 (2029)
Q Consensus      1962 ~~~~--~rg~~~~~pYlD~~GE~D~~lrrg~pl~L~~~Ry~~L~~~w~~h~i~~~~~~~~~~ 2021 (2029)
                      ++.+  ++|||+++||+|+|||+|+|+|||.|+|||++||+++..+|++|+|++  ++.+.+
T Consensus      1667 ll~~m~~~g~~~~~pylD~~gEtd~gl~rg~P~~L~~~ry~k~~~~w~~~~I~e--qv~~~~ 1726 (1738)
T KOG1140|consen 1667 LLEGMRNRGCFYPAPYLDEYGETDPGLRRGNPLHLNRERYRKLKELWLQQNITE--QVGRAT 1726 (1738)
T ss_pred             hhhcCCcCCCcCCCCccccccCCChhhhcCCcccccHhhhhhhHHHHhhcchHH--HHhhhc
Confidence            9988  999999999999999999999999999999999999999999999977  444443

>KOG1139 consensus Predicted ubiquitin-protein ligase of the N-recognin family [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1140 consensus N-end rule pathway, recognition component UBR1 [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>smart00396 ZnF_UBR1 Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway	Back alignment and domain information

>PF02207 zf-UBR: Putative zinc finger in N-recognin (UBR box); InterPro: IPR003126 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG1139 consensus Predicted ubiquitin-protein ligase of the N-recognin family [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF10390 ELL: RNA polymerase II elongation factor ELL ; InterPro: IPR019464 ELL is a family of RNA polymerase II elongation factors	Back alignment and domain information

>KOG1777 consensus Putative Zn-finger protein [General function prediction only]	Back alignment and domain information

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A	Back alignment and domain information

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Back alignment and domain information

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]	Back alignment and domain information

>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	Back alignment and domain information

>cd02335 ZZ_ADA2 Zinc finger, ZZ type	Back alignment and domain information

>KOG4796 consensus RNA polymerase II elongation factor [Transcription]	Back alignment and domain information

>cd02340 ZZ_NBR1_like Zinc finger, ZZ type	Back alignment and domain information

>cd02249 ZZ Zinc finger, ZZ type	Back alignment and domain information

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>smart00184 RING Ring finger	Back alignment and domain information

>cd02338 ZZ_PCMF_like Zinc finger, ZZ type	Back alignment and domain information

>KOG2905 consensus Transcription initiation factor IIF, small subunit (RAP30) [Transcription]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		2029
3ny1_A		77	Structure Of The Ubr-Box Of The Ubr1 Ubiquitin Liga		4e-08
3ny2_A		75	Structure Of The Ubr-Box Of Ubr2 Ubiquitin Ligase L		7e-07

>pdb|3NY1|A Chain A, Structure Of The Ubr-Box Of The Ubr1 Ubiquitin Ligase Length = 77

Back alignment and structure

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 117 VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSI-IYTXXXXXXXXXVTAW 175
           +CG V+ + +  Y CR C  DPTC +C+ CFQ+  HK H Y +   T           AW
Sbjct: 7   LCGRVFKSGETTYSCRDCAIDPTCVLCMDCFQDSVHKNHRYKMHTSTGGGFCDCGDTEAW 66
Query: 176 KREGFCSRHK 185
           K   FC  H+
Sbjct: 67  KTGPFCVNHE 76

PyMOL of 3ny1

>pdb|3NY2|A Chain A, Structure Of The Ubr-Box Of Ubr2 Ubiquitin Ligase Length = 75

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		2029
3ny3_A		75	E3 ubiquitin-protein ligase UBR2; zinc finger-like	5e-33
3nis_A		82	E3 ubiquitin-protein ligase UBR1; E3 ubiquitin lig	2e-31
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-16
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
2doa_A		104	RNA polymerase II elongation factor ELL; C19ORF17,	2e-06
2e5n_A		100	RNA polymerase II elongation factor ELL2; ELL_N2 d	6e-06

>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A Length = 75	Back alignment and structure

 Score =  121 bits (306), Expect = 5e-33
 Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 2/75 (2%)

Query: 113 GQRG-VCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYT-GGGCCDCG 170
           G  G +CG V+   +  Y CR C  DPTC +C+ CF    H++H Y +  + GGG CDCG
Sbjct: 1   GPLGSLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCG 60

Query: 171 DVTAWKREGFCSRHK 185
           D  AWK   +C +H+
Sbjct: 61  DTEAWKEGPYCQKHE 75

PyMOL of 3ny3

>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A Length = 82	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81 Length = 104	Back alignment and structure

>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		2029
3ny3_A		75	E3 ubiquitin-protein ligase UBR2; zinc finger-like	99.92
3nis_A		82	E3 ubiquitin-protein ligase UBR1; E3 ubiquitin lig	99.9
2e5n_A		100	RNA polymerase II elongation factor ELL2; ELL_N2 d	98.93
2doa_A		104	RNA polymerase II elongation factor ELL; C19ORF17,	98.84
2ct0_A		74	Non-SMC element 1 homolog; ring domain, structural	85.22
2kiz_A		69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	81.91
1bby_A		69	RAP30; average structure transcription regulation,	81.58
1v87_A		114	Deltex protein 2; ring-H2 domain, zinc-binding dom	80.41

>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A	Back alignment and structure

Probab=99.92  E-value=6.4e-26  Score=212.96  Aligned_cols=72  Identities=42%  Similarity=1.112  Sum_probs=66.9

Q ss_pred             CCccccccccCCceeEEeccCCCCCCccccccccCCCCCCCceeEEEec-CCccccCCCcccccccCCCCcCC
Q 000151          114 QRGVCGAVWGNNDIAYRCRTCEHDPTCAICVPCFQNGNHKEHDYSIIYT-GGGCCDCGDVTAWKREGFCSRHK  185 (2029)
Q Consensus       114 ~~~~Cg~v~~~ge~~y~C~~C~~d~t~~lC~~CF~~~~H~~H~~~~~~~-~gG~CDCGd~~awk~~~fC~~H~  185 (2029)
                      ..++||++|++||++|+|+||+.|+||+||.+||++++|+||+|+|+.+ +||+|||||++|||+++||++|.
T Consensus         3 ~g~~Cg~vf~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~~~~~~s~~gG~CDCGD~eawk~~~fC~~H~   75 (75)
T 3ny3_A            3 LGSLCGRVFKVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYRMTTSGGGGFCDCGDTEAWKEGPYCQKHE   75 (75)
T ss_dssp             ---CCCCBCCTTCEEEEETTTBSSTTCCBCHHHHHTSGGGGSCEEEEECCSCBBCCTTCTTTBSSCCSCTTTC
T ss_pred             CCCccCCcccCCCEEEECccCCCCCCeeEChHHCCCCCcCCceEEEEEcCCCCEecCcCHHHcCCCCCCCCCC
Confidence            4579999999999999999999999999999999999999999999884 78999999999999999999994

PyMOL of 3ny3

>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A	Back alignment and structure

>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81	Back alignment and structure

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}	Back alignment and structure

>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A	Back alignment and structure

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		2029
d2doaa1		91	a.4.5.81 (A:8-98) RNA polymerase II elongation fac	3e-21

>d2doaa1 a.4.5.81 (A:8-98) RNA polymerase II elongation factor ELL {Human (Homo sapiens) [TaxId: 9606]} Length = 91	Back information, alignment and structure


class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ELL N2 domain-like
domain: RNA polymerase II elongation factor ELL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.5 bits (217), Expect = 3e-21
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 868 ESLKRELVHRLAIGDATHSQLVKSLPRDLSKF---DQLQEILDAVAMYSHPSGFNQGMYS 924
              +  ++H LA+     ++L+  L +D       D L  +L  VA  S       G  +
Sbjct: 4   RPFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAK----DGTCT 59

Query: 925 LRWSYWKELDIYHPRWSSRDLQVAEERYLR 954
           L+   +K++    P +S  D Q+ +   +R
Sbjct: 60  LQDCMYKDVQKDWPGYSEGDQQLLKRVLVR 89

PyMOL of d2doaa1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		2029
d2doaa1		91	RNA polymerase II elongation factor ELL {Human (Ho	99.78
d1v87a_		114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	91.19
d1ur6b_		52	Not-4 N-terminal RING finger domain {Human (Homo s	88.21
d1g25a_		65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	84.81
d2bbya_		69	DNA-binding domain from rap30 {Human (Homo sapiens	82.19
d1vyxa_		60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	81.36

>d2doaa1 a.4.5.81 (A:8-98) RNA polymerase II elongation factor ELL {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ELL N2 domain-like
domain: RNA polymerase II elongation factor ELL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.3e-20  Score=181.12  Aligned_cols=83  Identities=24%  Similarity=0.334  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHhcCCCChHHHHhhCCCCCCC---cchHHHHHHHHccccCCCCCCcceEEeehhhcccccccccccCchhH
Q 000151          869 SLKRELVHRLAIGDATHSQLVKSLPRDLSK---FDQLQEILDAVAMYSHPSGFNQGMYSLRWSYWKELDIYHPRWSSRDL  945 (2029)
Q Consensus       869 ~lrrEIIh~Lc~~p~t~S~L~~~lpe~~~~---~~~fe~iL~eVA~f~~P~g~~~G~Y~LK~e~~~e~Dpy~~~y~~~~~  945 (2029)
                      .||+||||.||++|+|||||++.||+++..   ...|+.||++||+|++|    .|+|+||++||+||||||||||++|+
T Consensus         5 ~lR~~iIH~La~~p~~~sEL~~~l~~d~~~~~d~~~l~~iL~~Va~~~~~----~g~Y~LK~~~~~Evdp~~~~Ys~~dr   80 (91)
T d2doaa1           5 PFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAK----DGTCTLQDCMYKDVQKDWPGYSEGDQ   80 (91)
T ss_dssp             CHHHHHHHHHHHSCEEHHHHHHHHHHHCCCHHHHHHHHHHHHHSSEECSS----SCEEECCSSGGGGCCSCCTTCCSHHH
T ss_pred             hhHHHHHHHHHcCCCCHHHHHHHHHhcccccchHHHHHHHHHHHheecCC----CceEeeHHHHHhHcCccCCCCCHHHH
Confidence            389999999999999999999999998875   34799999999999975    58899999999999999999999999


Q ss_pred             HHHHHHHHHh
Q 000151          946 QVAEERYLRF  955 (2029)
Q Consensus       946 q~aeer~~r~  955 (2029)
                      |.|++.+.|+
T Consensus        81 q~~~~~l~rk   90 (91)
T d2doaa1          81 QLLKRVLVRK   90 (91)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999887653

PyMOL of d2doaa1

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2bbya_ a.4.5.15 (A:) DNA-binding domain from rap30 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}	Back information, alignment and structure