Citrus Sinensis ID: 000161

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400------1410------1420------1430------1440------1450------1460------1470------1480------1490------1500------1510------1520------1530------1540------1550------1560------1570------1580------1590------1600------1610------1620------1630------1640------1650------1660------1670------1680------1690------1700------1710------1720------1730------1740------1750------1760------1770------1780------1790------1800------1810------1820------1830------1840------1850------1860------1870------1880------1890------1900------1910------1920------1930------1940------1950------1960------1970------1980------199
MDRRRWDRQDGRRTKKQKLIRSAEEELEAKLGYDLFSEGDKRLGWLLTFASSSLEDEDTRKVYSCIDLYFVSQDGSTFKSKYKFRPYFYAATKEKMEMDVEAYLRRRYESQIADIEILEKEDLDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLHVVERNQAKFDAAEAYESILTGKREQRPQDFLDCIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVHVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQLLNNLDRDLQYAIKVEGKMDLESVSNYDEVKNAIMEKLLRLQEEPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEIFMGKRSDYYHLKKQIESEFVDGTNGHLSKSFLDLPKMEQQSRLKDRLKKYCQKAYKRVLDKPVTELREAGICMRENSFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVSKTYETHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADSELIDYISESSTMSKSLADYGEQKSCAVTTARRLSDFLGDTMVKDKGLRCQYIVACEPQGTPVSERAVPVAIFETDAEIMKFYLRKWCKTSSDVGIRSIVDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLYKKVREKEDKFRQRKLVDIFSSLKKDDFLNKTCNAETNLMDENVEDLEDFPKKRRNSVNGPRPIVRCFEVNNEQKTVKTTDQVDSLRQQLEPSEVSDQQPSSQNAIDTENIDRIVDYKGWLELKKRKWKDNLDRRKKQKLGSLRASHQANGVSESLGDMINHKEAQRRTGVGSYFRRQETAMTRCHWQIIQLVPSSQSGVFLAWVVVEGIMVRIPITVPRLFYLNSKDPIVEKFPGRRVNKTLPHGRRSFNLIEVMIDEDQFRKESKKLAALLADPEVEVLGWQQNAAKIGMQRCAASSQWFNERISLARYAHILWISDDGVPDLGGTSEEDECFADEVHQPVLTYPGAYRKVSVELKIHHLSVNALLKSNQVNEMEGGGLFGFDQDMNSGPYNNELCGFDETTSSAPAFRVVKQLIQRCLTDAVTSGNVFADAILQHLYRWLCSPHSKLHDPVLHRILHKVMQKVFAMLLAEFRKLGATIIFANFSKVIIDTGKFDLSAAKAYCDSLLKALQTRELFEWIELEPVHFWHSLLFMDQYNYGGIPARADESLDDDSQVDIVSSWNIAEYLPKEIQDHFVLVVSEFMYIPWKHAQKLAASRASLQEGSSCTPSITVAAAENFESHIVQYVKGEISSYFTGKLLSIVRDAIHHMKKMNNDQHNSPGVMQTAANIHKVDAPLEFIKHVCAAFALDQNVQHDVLVMRKNLLKYVRVREFAPEAEFRDPCPSFILPNVICSYCNDCRDLDLCRDMALLAQDWHCAMPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCIRCNQVKAAHLAEQCACAGSFRCKEDASDFRSKMQIFLNIANRQGFQLLQECTSWILEVQ
ccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEcCEEEECcccccccEEEEEEEEEEccccEEEEEEccccEEEEEcccccHHHHHHHHHHHHcccccEEEEEEEEcccccccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccccccccccEEEEcccccccEEEEEEEcccccEEEEccccccccccEEEEEEEECccccccccccccccEEEEEEEEccccEEEEEccccccccccccccccccccccEEEECcccHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHccccccccccEECcccccCEEEEEEEEHHHHHHHHHccccccccccHHHHHHHHcccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHcccccHHHHHHHHHHHHHHccCECccccccccccccccCEECcccccccEEEEcccccccccccccccccHHHHHHHHHccccccccccccccCCcccccccHHHHHHHHHHHHHHHHHcccccccccccEEHHHcccccHHHcccccccccccccccccccccccccccccccccEECcccccccccHHHHHHHHHHHccccccccccccccccccHHHHHHccccccHHHHHcccccEEEcccccccccEEEccccccEEcccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccCEEccccccEEEccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHcccccccEEcccccccEEEEECcCEEEEEEcccccccccccccEEEEcccccEEEEEccEEEEccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccccccccCEEEEEECcccccccccccccHHHHcccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEECcccccEEEEEEEEccEEEEEEEEEcEEEEEEccccccccccEEEEccccccccccccEEEEEccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccccccccccccccccEEEEEEEEEccHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccEEEEEcccccHHHHHHHHHHHHHHcccccccEEEEEcHHHHHHHHHccccccCEECcccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccccEECcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc
**********************AEEELEAKLGYDLFSEGDKRLGWLLTFASSSLEDEDTRKVYSCIDLYFVSQDGSTFKSKYKFRPYFYAATKEKMEMDVEAYLRRRYESQIADIEILEKEDLDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLHVVERNQAKFDAAEAYESILTGKREQRPQDFLDCIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVHVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQLLNNLDRDLQYAIKVEGKMDLESVSNYDEVKNAIMEKLLRLQEEPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEIFMGKRSDYYHLKKQIESEFVDGTNGHL***F**********RLKDRLKKYCQKAYKRVLDKPVTELREAGICMRENSFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAK**GNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVSKTYETHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADSELIDYISE**************KSCAVTTARRLSDFLGDTMVKDKGLRCQYIVACEPQGTPVSERAVPVAIFETDAEIMKFYLRKWCKTSSDVGIRSIVDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLYKKVREKEDKFRQRKLVDIFSSL****************************************************************************************DRIVDYKGWLELKKRKWKDN***************************************VGSYFRRQETAMTRCHWQIIQLVPSSQSGVFLAWVVVEGIMVRIPITVPRLFYLNSKDPIVEKFPGRRVNKTLPHGRRSFNLIEVMIDEDQFRKESKKLAALLADPEVEVLGWQQNAAKIGMQRCAASSQWFNERISLARYAHILWISDDGVPDLGGTSEEDECFADEVHQPVLTYPGAYRKVSVELKIHHLSVNALLKSNQVNEMEGGGLFGFD***********LCGFDETTSSAPAFRVVKQLIQRCLTDAVTSGNVFADAILQHLYRWLCSPHSKLHDPVLHRILHKVMQKVFAMLLAEFRKLGATIIFANFSKVIIDTGKFDLSAAKAYCDSLLKALQTRELFEWIELEPVHFWHSLLFMDQYNYGGIPARADESLDDDSQVDIVSSWNIAEYLPKEIQDHFVLVVSEFMYIPWKHAQK*************************FESHIVQYVKGEISSYFTGKLLSIVRDAIHHM**************QTAANIHKVDAPLEFIKHVCAAFALDQNVQHDVLVMRKNLLKYVRVREFAPEAEFRDPCPSFILPNVICSYCNDCRDLDLCRDMALLAQDWHCAMPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCIRCNQVKAAHLAEQCACAGSFRCKEDASDFRSKMQIFLNIANRQGFQLLQECTSWILEVQ
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MDRRRWDRQDGRRTKKQKLIRSAEEELEAKLGYDLFSEGDKRLGWLLTFASSSLEDEDTRKVYSCIDLYFVSQDGSTFKSKYKFRPYFYAATKEKMEMDVEAYLRRRYESQIADIEILEKEDLDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLHVVERNQAKFDAAEAYESILTGKREQRPQDFLDCIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVHVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQLLNNLDRDLQYAIKVEGKMDLESVSNYDEVKNAIMEKLLRLQEEPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEIFMGKRSDYYHLKKQIESEFVDGTNGHLSKSFLDLPKMEQQSRLKDRLKKYCQKAYKRVLDKPVTELREAGICMRENSFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVSKTYETHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADSELIDYISESSTMSKSLADYGEQKSCAVTTARRLSDFLGDTMVKDKGLRCQYIVACEPQGTPVSERAVPVAIFETDAEIMKFYLRKWCKTSSDVGIRSIVDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLYKKVREKEDKFRQRKLVDIFSSLKKDDFLNKTCNAETNLMDENVEDLEDFPKKRRNSVNGPRPIVRCFEVNNEQKTVKTTDQVDSLRQQLEPSEVSDQQPSSQNAIDTENIDRIVDYKGWLELKKRKWKDNLDRRKKQKLGSLRASHQANGVSESLGDMINHKEAQRRTGVGSYFRRQETAMTRCHWQIIQLVPSSQSGVFLAWVVVEGIMVRIPITVPRLFYLNSKDPIVEKFPGRRVNKTLPHGRRSFNLIEVMIDEDQFRKESKKLAALLADPEVEVLGWQQNAAKIGMQRCAASSQWFNERISLARYAHILWISDDGVPDLGGTSEEDECFADEVHQPVLTYPGAYRKVSVELKIHHLSVNALLKSNQVNEMEGGGLFGFDQDMNSGPYNNELCGFDETTSSAPAFRVVKQLIQRCLTDAVTSGNVFADAILQHLYRWLCSPHSKLHDPVLHRILHKVMQKVFAMLLAEFRKLGATIIFANFSKVIIDTGKFDLSAAKAYCDSLLKALQTRELFEWIELEPVHFWHSLLFMDQYNYGGIPARADESLDDDSQVDIVSSWNIAEYLPKEIQDHFVLVVSEFMYIPWKHAQKLAASRASLQEGSSCTPSITVAAAENFESHIVQYVKGEISSYFTGKLLSIVRDAIHHMKKMNNDQHNSPGVMQTAANIHKVDAPLEFIKHVCAAFALDQNVQHDVLVMRKNLLKYVRVREFAPEAEFRDPCPSFILPNVICSYCNDCRDLDLCRDMALLAQDWHCAMPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCIRCNQVKAAHLAEQCACAGSFRCKEDASDFRSKMQIFLNIANRQGFQLLQECTSWILEVQ

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
DNA polymerase epsilon catalytic subunit A DNA polymerase II participates in chromosomal DNA replication. Required for the timing and determination of cell fate during plant embryogenesis and root pole development, by promoting cell cycle and cell type patterning. Necessary for proper shoot (SAM) and root apical meristem (RAM) functions. Involved in maintaining epigenetic states, controlling hypersensitive response (HR), and mediating abscisic acid (ABA) signaling. Required for flowering repression through a mechanism involving epigenetic gene silencing. May participate in processes involved in chromatin-mediated cellular memory.probableF4HW04
DNA polymerase epsilon catalytic subunit A DNA polymerase II participates in chromosomal DNA replication.probableQ4WXH8
DNA polymerase epsilon catalytic subunit A Participates in DNA repair and in chromosomal DNA replication.probableQ07864

Prediction of Enzyme Commission Number ?

EC Number ?Description ?Confidence Level ?
2.-.-.-Transferases.probable
2.7.-.-Transferring phosphorous-containing groups.probable
2.7.7.-Nucleotidyltransferases.probable
2.7.7.7DNA-directed DNA polymerase.probable

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1QHT, chain A
Confidence level:very confident
Coverage over the Query: 45-156,187-215,236-285,303-524,592-628,647,665-671,714-744,755-876,898-979,998-1068,1098-1128
View the alignment between query and template
View the model in PyMOL
Template: 1S5J, chain A
Confidence level:very confident
Coverage over the Query: 40-155,192-497,512-524,592-634,662-667,712-876,894-912,924-989
View the alignment between query and template
View the model in PyMOL
Template: 3K59, chain A
Confidence level:very confident
Coverage over the Query: 42-156,189-493,505-524,592-630,661-676,717-743,772-1069,1092-1121
View the alignment between query and template
View the model in PyMOL
Template: 2GV9, chain A
Confidence level:very confident
Coverage over the Query: 62-155,189-491
View the alignment between query and template
View the model in PyMOL
Template: 3QEX, chain A
Confidence level:very confident
Coverage over the Query: 67-97,118-156,189-212,224-493,505-524,592-653,665-671,714-1071,1091-1120,1135-1154
View the alignment between query and template
View the model in PyMOL
Template: 1QHT, chain A
Confidence level:very confident
Coverage over the Query: 1569-1677
View the alignment between query and template
View the model in PyMOL
Template: 3A2F, chain A
Confidence level:confident
Coverage over the Query: 189-224,236-292,304-567
View the alignment between query and template
View the model in PyMOL