Citrus Sinensis ID: 000161
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1988 | 2.2.26 [Sep-21-2011] | |||||||
| F4HW04 | 2161 | DNA polymerase epsilon ca | yes | no | 0.696 | 0.640 | 0.806 | 0.0 | |
| F4IFN6 | 2138 | DNA polymerase epsilon ca | no | no | 0.689 | 0.641 | 0.763 | 0.0 | |
| Q07864 | 2286 | DNA polymerase epsilon ca | yes | no | 0.690 | 0.600 | 0.507 | 0.0 | |
| Q9WVF7 | 2283 | DNA polymerase epsilon ca | yes | no | 0.680 | 0.592 | 0.511 | 0.0 | |
| Q4WXH8 | 2230 | DNA polymerase epsilon ca | yes | no | 0.676 | 0.603 | 0.505 | 0.0 | |
| O93845 | 2207 | DNA polymerase epsilon ca | yes | no | 0.669 | 0.603 | 0.501 | 0.0 | |
| P21951 | 2222 | DNA polymerase epsilon ca | yes | no | 0.659 | 0.590 | 0.484 | 0.0 | |
| P0CN26 | 2250 | DNA polymerase epsilon ca | yes | no | 0.670 | 0.592 | 0.473 | 0.0 | |
| P0CN27 | 2250 | DNA polymerase epsilon ca | N/A | no | 0.670 | 0.592 | 0.473 | 0.0 | |
| Q4PFV5 | 2305 | DNA polymerase epsilon ca | N/A | no | 0.567 | 0.489 | 0.543 | 0.0 |
| >sp|F4HW04|DPOE1_ARATH DNA polymerase epsilon catalytic subunit A OS=Arabidopsis thaliana GN=POL2A PE=1 SV=1 | Back alignment and function desciption |
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Score = 2367 bits (6134), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1139/1413 (80%), Positives = 1266/1413 (89%), Gaps = 28/1413 (1%)
Query: 2 DRRRWDRQDGRRTKKQKLIRSAEEELEAKLGYDLFSEGDKRLGWLLTFASSSLEDEDTRK 61
D RR DR+D R +KK K++ +AE+ELE+KLG+ LFSEG+ RLGWLLTF+SSS ED DT K
Sbjct: 4 DNRRRDRKDTRWSKKPKVVNTAEDELESKLGFGLFSEGETRLGWLLTFSSSSWEDRDTGK 63
Query: 62 VYSCIDLYFVSQDGSTFKSKYKFRPYFYAATKEKMEMDVEAYLRRRYESQIADIEILEKE 121
VYSC+DLYFV+QDG +FK+KYKFRPYFYAATK+KME+++EAYLRRRYE Q+ADIEI+EKE
Sbjct: 64 VYSCVDLYFVTQDGFSFKTKYKFRPYFYAATKDKMELELEAYLRRRYERQVADIEIVEKE 123
Query: 122 DLDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLHVVERNQAKFDAAEAYESILTGKREQ 181
DLDLKNHLSGL K YLKISFDTVQQLM+VK+DLLH+VERNQAKFDA EAYESIL GKREQ
Sbjct: 124 DLDLKNHLSGLQKKYLKISFDTVQQLMEVKRDLLHIVERNQAKFDALEAYESILAGKREQ 183
Query: 182 RPQDFLDCIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVHV 241
RPQD LD IVDLREYDVPYH+RFAIDNDVR GQWY+VSISST +LEKR DLLQRAEV V
Sbjct: 184 RPQDCLDSIVDLREYDVPYHVRFAIDNDVRSGQWYNVSISSTDVILEKRTDLLQRAEVRV 243
Query: 242 CAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGY 301
CAFDIETTKLPLKFPDA+YD IMMISYM+DGQG+LIINRECVGED+EDLEYTPKPEFEGY
Sbjct: 244 CAFDIETTKLPLKFPDAEYDQIMMISYMVDGQGFLIINRECVGEDVEDLEYTPKPEFEGY 303
Query: 302 FKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQC 361
FKVTNV NE+ELL+ WF HMQE+KPGIYVTYNGD+FDWPF+E RA+HHG KM+EELGF+C
Sbjct: 304 FKVTNVKNEVELLQRWFYHMQELKPGIYVTYNGDFFDWPFIERRASHHGIKMNEELGFRC 363
Query: 362 DKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKE 421
D+NQGECRAKFACHLDCFAWVKRDSYLPQGS GLKAVTKAKLGYDPLEVNPEDMVRFA E
Sbjct: 364 DQNQGECRAKFACHLDCFAWVKRDSYLPQGSHGLKAVTKAKLGYDPLEVNPEDMVRFAME 423
Query: 422 KPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAY 481
KPQ MASYSVSDAVATYYLYMTYV+PFIFSLATIIPM PDEVLRKGSGTLCEMLLMV+AY
Sbjct: 424 KPQTMASYSVSDAVATYYLYMTYVNPFIFSLATIIPMVPDEVLRKGSGTLCEMLLMVEAY 483
Query: 482 KANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQLL 541
KANV+CPNK+Q+DPEKFY+N LLESETYIGGHVECLESGVFRSD+PTSFKLD SAY+QL+
Sbjct: 484 KANVVCPNKNQADPEKFYQNQLLESETYIGGHVECLESGVFRSDIPTSFKLDSSAYQQLI 543
Query: 542 NNLDRDLQYAIKVEGKMDLESVSNYDEVKNAIMEKLLRLQEEPIREECPLIYHLDVAAMY 601
+NL RDL+YAI VEGKM ++S+SNYDEVK+ I EKL +L+++PIREE PLIYHLDVAAMY
Sbjct: 544 DNLGRDLEYAITVEGKMRMDSISNYDEVKDEIKEKLEKLRDDPIREEGPLIYHLDVAAMY 603
Query: 602 PNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEIFMGKRSDYYHLKKQIE 661
PNIILTNRLQPPSIVTDE+CTACDFNRPGKTCLRKLEWVWRG FMGK+SDYYHLKKQIE
Sbjct: 604 PNIILTNRLQPPSIVTDEICTACDFNRPGKTCLRKLEWVWRGVTFMGKKSDYYHLKKQIE 663
Query: 662 SEFVD-GTNGHLSKSFLDLPKMEQQSRLKDRLKKYCQKAYKRVLDKPVTELREAGICMRE 720
SEFVD G N SKSFLDLPK++QQS+LK+RLKKYCQKAYKRVLDKP+TE+REAGICMRE
Sbjct: 664 SEFVDAGANIMSSKSFLDLPKVDQQSKLKERLKKYCQKAYKRVLDKPITEVREAGICMRE 723
Query: 721 NSFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKC 780
N FYVDTVRSFRDRRYEYK LNKVWKGKLSEAKASGNSIKIQEAQDMVV+YDSLQLAHKC
Sbjct: 724 NPFYVDTVRSFRDRRYEYKTLNKVWKGKLSEAKASGNSIKIQEAQDMVVVYDSLQLAHKC 783
Query: 781 ILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCVLPG 840
ILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIE+IGKPLELDTDGIWC LPG
Sbjct: 784 ILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIERIGKPLELDTDGIWCCLPG 843
Query: 841 SFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVSKTYETHSECSIEF 900
SFPENFTFKT D+ KKLTISYPCVMLNVDVA+NNTNDQYQTLVDPV KTY++HSECSIEF
Sbjct: 844 SFPENFTFKTIDM-KKLTISYPCVMLNVDVAKNNTNDQYQTLVDPVRKTYKSHSECSIEF 902
Query: 901 EVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFD 960
EVDGPYKAMI+PASKEEGILIKKRYAVFN DGTLAELKGFEIKRRGELKLIKVFQAELFD
Sbjct: 903 EVDGPYKAMIIPASKEEGILIKKRYAVFNHDGTLAELKGFEIKRRGELKLIKVFQAELFD 962
Query: 961 KFLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADSELIDYISESSTMSKSLADYGEQKS 1020
KFLHGST+EECYSAVAAVA+RWLDLLDNQGKDIADSEL+DYISESSTMSKSLADYGEQKS
Sbjct: 963 KFLHGSTLEECYSAVAAVADRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQKS 1022
Query: 1021 CAVTTARRLSDFLGDTMVKDKGLRCQYIVACEPQGTPVSERAVPVAIFETDAEIMKFYLR 1080
CAVTTA+RL++FLG TMVKDKGLRCQYIVACEP+GTPVSERAVPVAIF T+ E+MKF+LR
Sbjct: 1023 CAVTTAKRLAEFLGVTMVKDKGLRCQYIVACEPKGTPVSERAVPVAIFTTNPEVMKFHLR 1082
Query: 1081 KWCKTSSDVGIRSIVDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLYKKVRE 1140
KWCKTSSDVGIR I+DWSYYKQRLSSAIQK+ITIPAAMQKV+NPVPRV+HPDWL+KKVRE
Sbjct: 1083 KWCKTSSDVGIRLIIDWSYYKQRLSSAIQKVITIPAAMQKVANPVPRVLHPDWLHKKVRE 1142
Query: 1141 KEDKFRQRKLVDIFSSLKKDDFLNKTCNAETNLMDENVEDLEDFPKKRRNSVNGPRPIVR 1200
K+DKFRQRKLVD+FSS KD L + + + +NVED+EDF K+ R SV GP+PI R
Sbjct: 1143 KDDKFRQRKLVDMFSSANKDVVL----DTDLPVTKDNVEDIEDFCKENRPSVKGPKPIAR 1198
Query: 1201 CFEVNNEQKTVKTTDQVDSLRQQLEPSEVSDQQPSSQNAIDTENIDRIVDYKGWLELKKR 1260
+EVN +Q + + D +E D I +NID+ V+Y+GWLELKKR
Sbjct: 1199 SYEVNKKQSECEQQESWD--------TEFHD--------ISFQNIDKSVNYQGWLELKKR 1242
Query: 1261 KWKDNLDRRKKQKLGSLRASHQANGVSESLGDMINHKEAQRRTGVGSYFRRQETAMTRCH 1320
KWK L+++KK++LG LR+S+Q + IN K Q R GVGSYFRR E A+T H
Sbjct: 1243 KWKVTLEKKKKRRLGDLRSSNQVD------THEINQKVGQGRGGVGSYFRRPEEALTSSH 1296
Query: 1321 WQIIQLVPSSQSGVFLAWVVVEGIMVRIPITVPRLFYLNSKDPIVEKFPGRRVNKTLPHG 1380
WQIIQLVPS QSG F AWVVVEG+M++IP+++PR+FY+NSK PI E F G+ VNK LPHG
Sbjct: 1297 WQIIQLVPSPQSGQFFAWVVVEGLMLKIPLSIPRVFYINSKVPIDEYFQGKCVNKILPHG 1356
Query: 1381 RRSFNLIEVMIDEDQFRKESKKLAALLADPEVE 1413
R ++L EV I EDQF+KESKK AALLADP VE
Sbjct: 1357 RPCYSLTEVKIQEDQFKKESKKRAALLADPGVE 1389
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DNA polymerase II participates in chromosomal DNA replication. Required for the timing and determination of cell fate during plant embryogenesis and root pole development, by promoting cell cycle and cell type patterning. Necessary for proper shoot (SAM) and root apical meristem (RAM) functions. Involved in maintaining epigenetic states, controlling hypersensitive response (HR), and mediating abscisic acid (ABA) signaling. Required for flowering repression through a mechanism involving epigenetic gene silencing. May participate in processes involved in chromatin-mediated cellular memory. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 7 |
| >sp|F4IFN6|DPOE2_ARATH DNA polymerase epsilon catalytic subunit B OS=Arabidopsis thaliana GN=POL2B PE=2 SV=1 | Back alignment and function description |
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| >sp|Q07864|DPOE1_HUMAN DNA polymerase epsilon catalytic subunit A OS=Homo sapiens GN=POLE PE=1 SV=5 | Back alignment and function description |
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| >sp|Q9WVF7|DPOE1_MOUSE DNA polymerase epsilon catalytic subunit A OS=Mus musculus GN=Pole PE=2 SV=3 | Back alignment and function description |
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| >sp|Q4WXH8|DPOE_ASPFU DNA polymerase epsilon catalytic subunit A OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pol2 PE=3 SV=1 | Back alignment and function description |
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| >sp|O93845|DPOE_EMENI DNA polymerase epsilon catalytic subunit A OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=pol2 PE=3 SV=2 | Back alignment and function description |
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| >sp|P21951|DPOE_YEAST DNA polymerase epsilon catalytic subunit A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POL2 PE=1 SV=1 | Back alignment and function description |
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| >sp|P0CN26|DPOE_CRYNJ DNA polymerase epsilon catalytic subunit A OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=POL2 PE=3 SV=1 | Back alignment and function description |
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| >sp|P0CN27|DPOE_CRYNB DNA polymerase epsilon catalytic subunit A OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=POL2 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q4PFV5|DPOE_USTMA DNA polymerase epsilon catalytic subunit A OS=Ustilago maydis (strain 521 / FGSC 9021) GN=POL2 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1988 | ||||||
| 224132028 | 2221 | predicted protein [Populus trichocarpa] | 0.708 | 0.634 | 0.861 | 0.0 | |
| 255576345 | 2227 | DNA polymerase epsilon, catalytic subuni | 0.703 | 0.628 | 0.859 | 0.0 | |
| 359479378 | 2214 | PREDICTED: DNA polymerase epsilon cataly | 0.708 | 0.636 | 0.847 | 0.0 | |
| 449496326 | 2051 | PREDICTED: DNA polymerase epsilon cataly | 0.706 | 0.684 | 0.823 | 0.0 | |
| 449456122 | 2206 | PREDICTED: DNA polymerase epsilon cataly | 0.706 | 0.636 | 0.824 | 0.0 | |
| 357471885 | 2248 | DNA polymerase epsilon catalytic subunit | 0.704 | 0.622 | 0.802 | 0.0 | |
| 356544708 | 2207 | PREDICTED: DNA polymerase epsilon cataly | 0.695 | 0.626 | 0.809 | 0.0 | |
| 334182383 | 2161 | DNA polymerase epsilon subunit 1 [Arabid | 0.696 | 0.640 | 0.806 | 0.0 | |
| 356540065 | 2205 | PREDICTED: LOW QUALITY PROTEIN: DNA poly | 0.694 | 0.625 | 0.801 | 0.0 | |
| 297843602 | 2241 | EMB2284/POL2A/TIL1 [Arabidopsis lyrata s | 0.687 | 0.609 | 0.775 | 0.0 |
| >gi|224132028|ref|XP_002328167.1| predicted protein [Populus trichocarpa] gi|222837682|gb|EEE76047.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2551 bits (6612), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1218/1414 (86%), Positives = 1312/1414 (92%), Gaps = 5/1414 (0%)
Query: 2 DRRRWDRQDGRRT-KKQKLIRSAEEELEAKLGYDLFSEGDKRLGWLLTFASSSLEDEDTR 60
+ RRWDR+D RR+ KKQKL+R+AEEELE+KLG+DLF+EGDKRLGWLLTF+SSSL+DE+T
Sbjct: 4 ESRRWDRKDLRRSSKKQKLMRTAEEELESKLGFDLFTEGDKRLGWLLTFSSSSLDDEETG 63
Query: 61 KVYSCIDLYFVSQDGSTFKSKYKFRPYFYAATKEKMEMDVEAYLRRRYESQIADIEILEK 120
+VYSC+DLYFVSQDGS FKSKYKFRPYFYAATKEKMEMDVE YLRRRYESQIA IEI+EK
Sbjct: 64 RVYSCVDLYFVSQDGSAFKSKYKFRPYFYAATKEKMEMDVEGYLRRRYESQIAYIEIVEK 123
Query: 121 EDLDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLHVVERNQAKFDAAEAYESILTGKRE 180
EDLDLKNHLSGLHKSYLKISF TVQQLMDVK+DLLHVVERNQAK DAAEAYESILTGKRE
Sbjct: 124 EDLDLKNHLSGLHKSYLKISFATVQQLMDVKRDLLHVVERNQAKSDAAEAYESILTGKRE 183
Query: 181 QRPQDFLDCIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVH 240
QRPQDFLDCI+DLREYDVPYH+RFAIDND+RCGQWYDVS+SSTG LEKR DLLQRAEVH
Sbjct: 184 QRPQDFLDCIIDLREYDVPYHVRFAIDNDIRCGQWYDVSVSSTGVKLEKRTDLLQRAEVH 243
Query: 241 VCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEG 300
VCAFDIETTKLPLKFPDADYD+IMMISYM+DGQGYLI NRECVGEDIEDLEYTPKPE+EG
Sbjct: 244 VCAFDIETTKLPLKFPDADYDLIMMISYMVDGQGYLITNRECVGEDIEDLEYTPKPEYEG 303
Query: 301 YFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQ 360
FKVTNV NE+ELL+ WFAHM+EVKPGIYVTYNGDYFDWPFLE+RAA+HGFKM +E+GF
Sbjct: 304 CFKVTNVKNEVELLKQWFAHMREVKPGIYVTYNGDYFDWPFLESRAAYHGFKMGDEVGFS 363
Query: 361 CDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAK 420
CDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAK
Sbjct: 364 CDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAK 423
Query: 421 EKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQA 480
EKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQA
Sbjct: 424 EKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQA 483
Query: 481 YKANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQL 540
Y ANVICPNKHQSD +KFY++HLLESETYIGGHVECLESGVFRSDLPTSFKLDPSAYE L
Sbjct: 484 YMANVICPNKHQSDQDKFYKSHLLESETYIGGHVECLESGVFRSDLPTSFKLDPSAYELL 543
Query: 541 LNNLDRDLQYAIKVEGKMDLESVSNYDEVKNAIMEKLLRLQEEPIREECPLIYHLDVAAM 600
+ NLDRDLQYAI+VEGKMDL+ +SNYDEVKN IMEKL+ L++EP+REECPLIYHLDVAAM
Sbjct: 544 IKNLDRDLQYAIRVEGKMDLDLISNYDEVKNVIMEKLVCLRDEPVREECPLIYHLDVAAM 603
Query: 601 YPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEIFMGKRSDYYHLKKQI 660
YPNIILTNRLQPPSIVTDE+CTACDFNRP KTCLRKLEWVWRGEIFM K+SDYYHLKKQI
Sbjct: 604 YPNIILTNRLQPPSIVTDEICTACDFNRPDKTCLRKLEWVWRGEIFMAKKSDYYHLKKQI 663
Query: 661 ESEFVDGTNGHLSKSFLDLPKMEQQSRLKDRLKKYCQKAYKRVLDKPVTELREAGICMRE 720
ESEFVDGT+G SKSFLDL KM+QQS+LK+RLKKYCQKAYKRVLDKPVTE+REAGICMRE
Sbjct: 664 ESEFVDGTDGQFSKSFLDLSKMDQQSKLKERLKKYCQKAYKRVLDKPVTEVREAGICMRE 723
Query: 721 NSFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKC 780
NSFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEA DMVVLYDSLQLAHKC
Sbjct: 724 NSFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAHDMVVLYDSLQLAHKC 783
Query: 781 ILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCVLPG 840
ILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLL++KIGKPLELDTDGIWCVLPG
Sbjct: 784 ILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVDKIGKPLELDTDGIWCVLPG 843
Query: 841 SFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVSKTYETHSECSIEF 900
FPENFTFKTKD KKKLTISYPCVMLNVDVARNNTN+QYQTLVDPV+KTY THSECSIEF
Sbjct: 844 CFPENFTFKTKDSKKKLTISYPCVMLNVDVARNNTNEQYQTLVDPVNKTYATHSECSIEF 903
Query: 901 EVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFD 960
EVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFD
Sbjct: 904 EVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFD 963
Query: 961 KFLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADSELIDYISESSTMSKSLADYGEQKS 1020
KFLHGST+EECYSAVAAVANRWLDLLDNQGKDIADSEL+DYISESSTMSKSL+DYG+QKS
Sbjct: 964 KFLHGSTLEECYSAVAAVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLSDYGQQKS 1023
Query: 1021 CAVTTARRLSDFLGDTMVKDKGLRCQYIVACEPQGTPVSERAVPVAIFETDAEIMKFYLR 1080
CAVTTARRL+DFLGDTMVKDKGLRCQYIVACEP+GTPVSERAVPVAIFETD EIMKFYLR
Sbjct: 1024 CAVTTARRLADFLGDTMVKDKGLRCQYIVACEPRGTPVSERAVPVAIFETDPEIMKFYLR 1083
Query: 1081 KWCKTSSDVGIRSIVDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLYKKVRE 1140
KWCKTSSDVGIRSI+DWSYYKQRL SAIQKI+TIPAAMQKV+NPVPRVVHPDWL++KVRE
Sbjct: 1084 KWCKTSSDVGIRSIIDWSYYKQRLGSAIQKIVTIPAAMQKVANPVPRVVHPDWLHRKVRE 1143
Query: 1141 KEDKFRQRKLVDIFSSLKKDDFLNKTCNAETNLMDE-NVEDLEDFPKKRRNSVNGPRPIV 1199
KEDKFRQRKLVDIF+ +DD K +A DE NV+DLEDF + + +S+N PRPIV
Sbjct: 1144 KEDKFRQRKLVDIFNLRSRDDLSRKMDDATITNHDEANVKDLEDF-QIKSSSINRPRPIV 1202
Query: 1200 RCFEVNNEQKTVKTTDQVDSLRQQLEPSEVSDQQPSSQNAIDTENIDRIVDYKGWLELKK 1259
RC++V NE+++ K T Q++S QQ + QP N ENIDR VDY+GWLELKK
Sbjct: 1203 RCYDV-NEKRSAKKTGQLNSAEQQTDSVHELSSQP-QHNTSYAENIDRNVDYQGWLELKK 1260
Query: 1260 RKWKDNLDRRKKQKLGSLRASHQANGVSESLGDMINHKEAQRRTGVGSYFRRQETAMTRC 1319
RKWKD LDRRKKQ+L + R SH SE LG + NHK AQRRTGVGSYF E A+TRC
Sbjct: 1261 RKWKDILDRRKKQRLNNTRTSHHITDASELLGGLTNHKGAQRRTGVGSYFTTHEVALTRC 1320
Query: 1320 HWQIIQLVPSSQSGVFLAWVVVEGIMVRIPITVPRLFYLNSKDPIVEKFPGRRVNKTLPH 1379
HWQIIQL+PSS+ G F AWVVVEGIM++IPIT+PR FYLN+K P +E FPGRRV KTLPH
Sbjct: 1321 HWQIIQLLPSSRCGQFFAWVVVEGIMLKIPITIPRAFYLNAKAPAMENFPGRRVTKTLPH 1380
Query: 1380 GRRSFNLIEVMIDEDQFRKESKKLAALLADPEVE 1413
GR S+NL+EV+IDED+FRKESKKLAALLADPEVE
Sbjct: 1381 GRPSYNLVEVIIDEDKFRKESKKLAALLADPEVE 1414
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255576345|ref|XP_002529065.1| DNA polymerase epsilon, catalytic subunit, putative [Ricinus communis] gi|223531477|gb|EEF33309.1| DNA polymerase epsilon, catalytic subunit, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|359479378|ref|XP_002269920.2| PREDICTED: DNA polymerase epsilon catalytic subunit A [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449496326|ref|XP_004160105.1| PREDICTED: DNA polymerase epsilon catalytic subunit A-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449456122|ref|XP_004145799.1| PREDICTED: DNA polymerase epsilon catalytic subunit A-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|357471885|ref|XP_003606227.1| DNA polymerase epsilon catalytic subunit A [Medicago truncatula] gi|355507282|gb|AES88424.1| DNA polymerase epsilon catalytic subunit A [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|356544708|ref|XP_003540789.1| PREDICTED: DNA polymerase epsilon catalytic subunit A-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|334182383|ref|NP_172303.5| DNA polymerase epsilon subunit 1 [Arabidopsis thaliana] gi|426019656|sp|F4HW04.1|DPOE1_ARATH RecName: Full=DNA polymerase epsilon catalytic subunit A; AltName: Full=DNA polymerase 2 a; Short=AtPOL2a; AltName: Full=DNA polymerase II subunit a; AltName: Full=Protein ABA OVERLY SENSITIVE a; AltName: Full=Protein EARLY IN SHORT DAYS 7; AltName: Full=Protein EMBRYO DEFECTIVE 142; AltName: Full=Protein EMBRYO DEFECTIVE 2284; AltName: Full=Protein EMBRYO DEFECTIVE 529; AltName: Full=Protein TILTED 1 gi|332190145|gb|AEE28266.1| DNA polymerase epsilon subunit 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|356540065|ref|XP_003538511.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase epsilon catalytic subunit A-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|297843602|ref|XP_002889682.1| EMB2284/POL2A/TIL1 [Arabidopsis lyrata subsp. lyrata] gi|297335524|gb|EFH65941.1| EMB2284/POL2A/TIL1 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1988 | ||||||
| TAIR|locus:2059314 | 2138 | TIL2 "TILTED 2" [Arabidopsis t | 0.595 | 0.553 | 0.803 | 0.0 | |
| UNIPROTKB|E7ETS8 | 2297 | POLE "DNA polymerase" [Homo sa | 0.631 | 0.546 | 0.528 | 0.0 | |
| UNIPROTKB|Q07864 | 2286 | POLE "DNA polymerase epsilon c | 0.631 | 0.548 | 0.528 | 0.0 | |
| UNIPROTKB|E1C5P2 | 2284 | POLE "DNA polymerase" [Gallus | 0.635 | 0.552 | 0.526 | 0.0 | |
| MGI|MGI:1196391 | 2283 | Pole "polymerase (DNA directed | 0.629 | 0.548 | 0.527 | 0.0 | |
| ZFIN|ZDB-GENE-070705-557 | 2284 | pole "polymerase (DNA directed | 0.620 | 0.539 | 0.526 | 0.0 | |
| UNIPROTKB|E1BIF0 | 2291 | POLE "DNA polymerase" [Bos tau | 0.630 | 0.547 | 0.527 | 0.0 | |
| UNIPROTKB|F1Q4D5 | 2237 | POLE "DNA polymerase" [Canis l | 0.621 | 0.552 | 0.531 | 0.0 | |
| UNIPROTKB|F5H1D6 | 2259 | POLE "DNA polymerase" [Homo sa | 0.598 | 0.526 | 0.540 | 0.0 | |
| ASPGD|ASPL0000036818 | 2207 | AN3067 [Emericella nidulans (t | 0.581 | 0.523 | 0.542 | 0.0 |
| TAIR|locus:2059314 TIL2 "TILTED 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5088 (1796.1 bits), Expect = 0., Sum P(5) = 0.
Identities = 963/1198 (80%), Positives = 1061/1198 (88%)
Query: 22 SAEEELEAKLGYDLFSEGDKRLGWLLTFASSSLEDEDTRKVYSCIDLYFVSQDGSTFKSK 81
SA +ELE KLG+ LFS+G+ RLGWLLTFASSS ED DT K +SC+DL+FV+QDGS+FK+K
Sbjct: 16 SAADELETKLGFGLFSQGETRLGWLLTFASSSWEDADTGKTFSCVDLFFVTQDGSSFKTK 75
Query: 82 YKFRPYFYAATKEKMEMDVEAYLRRRYESQIADIEILEKEDLDLKNHLSGLHKSYLKISF 141
YKFRPY YAATK+ ME++VEAYLRRRYE Q+ADI+I+ KEDL LKNHLSGL K YLK+SF
Sbjct: 76 YKFRPYLYAATKDNMELEVEAYLRRRYERQVADIQIVHKEDLYLKNHLSGLQKKYLKVSF 135
Query: 142 DTVQQLMDVKKDLLHVVERNQAKFDAAEAYESILTGKREQRPQDFLDCIVDLREYDVPYH 201
DTVQQL++VK+DLLH+VERN AKF+A EAYESIL+GKREQRPQD LD +VDLREYDVPYH
Sbjct: 136 DTVQQLVEVKRDLLHIVERNLAKFNALEAYESILSGKREQRPQDCLDSVVDLREYDVPYH 195
Query: 202 IRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVHVCAFDIETTKLPLKFPDADYD 261
+RFAIDNDVR GQWY+VSISST +LEKR DLLQRAEV VCAFDIET KLPLKFPDA+YD
Sbjct: 196 VRFAIDNDVRSGQWYNVSISSTDVILEKRTDLLQRAEVRVCAFDIETVKLPLKFPDAEYD 255
Query: 262 IIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLWFAHM 321
IMMISYM+DGQG+LI NRECVG+DIEDLEYTPKPEFEGYFKVTNV NE+ELLR WF+HM
Sbjct: 256 QIMMISYMVDGQGFLITNRECVGKDIEDLEYTPKPEFEGYFKVTNVTNEVELLRKWFSHM 315
Query: 322 QEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAW 381
QE+KPGIYVTYNGD+FDWPF+E RA+HHG KM+EELGF+CD+NQGECRAKF CHLDCF+W
Sbjct: 316 QELKPGIYVTYNGDFFDWPFIERRASHHGIKMNEELGFRCDQNQGECRAKFVCHLDCFSW 375
Query: 382 VKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLY 441
VKRDSYLPQGSQGLKAVTK KLGYDPLEVNPEDMVRFA EKPQ MASYSVSDAVATYYLY
Sbjct: 376 VKRDSYLPQGSQGLKAVTKVKLGYDPLEVNPEDMVRFAMEKPQTMASYSVSDAVATYYLY 435
Query: 442 MTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYRN 501
MTYVHPF+FSLATIIPM PDEVLRKGSGTLCEMLLMV+AYKANV+CPNK+Q+DPEKFY+
Sbjct: 436 MTYVHPFVFSLATIIPMVPDEVLRKGSGTLCEMLLMVEAYKANVVCPNKNQADPEKFYQG 495
Query: 502 HLLESETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQLLNNLDRDLQYAIKVEGKMDLE 561
LLESETYIGGHVECL+SGVFRSD+PTSFKLD SAY+QL++NL RDL+YAI VEGKM ++
Sbjct: 496 KLLESETYIGGHVECLQSGVFRSDIPTSFKLDASAYQQLIDNLGRDLEYAITVEGKMRMD 555
Query: 562 SVSNYDEVKNAIMEKLLRLQEEPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVC 621
SVSN+DEVK I EKL +L+++PIREE PLIYHLDVAAMYPNIILTNRLQPPSIVTDEVC
Sbjct: 556 SVSNFDEVKEVIREKLEKLRDDPIREEGPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVC 615
Query: 622 TACDFNRPGKTCLRKLEWVWRGEIFMGKRSDYYHLKKQIESEFVD-GTNGHLSKSFLDLP 680
TACDFN P KTCLRKLEWVWRG F G +S+YYHLKKQIESE VD G N SK FLDLP
Sbjct: 616 TACDFNGPEKTCLRKLEWVWRGVTFKGNKSEYYHLKKQIESESVDAGANMQSSKPFLDLP 675
Query: 681 KMEQQSRLKDRLKKYCQKAYKRVLDKPVTELREAGICMRENSFYVDTVRSFRDRRYEYKG 740
K+EQQS+LK+RLKKYCQKAY RVLDKP+TE+REAGICMREN FYVDTVRSFRDRRYEYK
Sbjct: 676 KVEQQSKLKERLKKYCQKAYSRVLDKPITEVREAGICMRENPFYVDTVRSFRDRRYEYKT 735
Query: 741 LNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSME 800
LNKVWKGKLSEAKASGN IKIQEA DMVV+YDSLQLAHKCILNSFYGYVMRKGARWYSME
Sbjct: 736 LNKVWKGKLSEAKASGNLIKIQEAHDMVVVYDSLQLAHKCILNSFYGYVMRKGARWYSME 795
Query: 801 MAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCVLPGSFPENXXXXXXXXXXXXXIS 860
MAGVVTYTGAKIIQNARLLIE+IGKPLELDTDGIWC LPGSFPEN IS
Sbjct: 796 MAGVVTYTGAKIIQNARLLIERIGKPLELDTDGIWCALPGSFPENFTFKTIDMKKFT-IS 854
Query: 861 YPCVMLNVDVARNNTNDQYQTLVDPVSKTYETHSECSIEFEVDGPYKAMILPASKEEGIL 920
YPCV+LNVDVA+NN+NDQYQTLVDPV KTY + SECSIEFEVDGPYKAMI+PASKEEGIL
Sbjct: 855 YPCVILNVDVAKNNSNDQYQTLVDPVRKTYNSRSECSIEFEVDGPYKAMIIPASKEEGIL 914
Query: 921 IKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVAAVAN 980
IKKRYAVFN DGT+AELKGFE+KRRGELKLIKVFQAELFDKFLHGST+EECYSAVAAVAN
Sbjct: 915 IKKRYAVFNHDGTIAELKGFEMKRRGELKLIKVFQAELFDKFLHGSTLEECYSAVAAVAN 974
Query: 981 RWLDLLDNQGKDIADSELIDYISESSTMSKSLADYGEQKSCAVTTARRLSDFLGDTMVKD 1040
RWLDLL+ QGKDIADSEL+DYISESSTMSKSLADYG+QKSCAVTTA+RL+DFLGDTMVKD
Sbjct: 975 RWLDLLEGQGKDIADSELLDYISESSTMSKSLADYGQQKSCAVTTAKRLADFLGDTMVKD 1034
Query: 1041 KGLRCQYIVACEPQGTPVSERAVPVAIFETDAEIMKFYLRKWCKTSSDVGIRSIVDWSYY 1100
KGLRCQYIVA EP+GTPVSERAVPVAIF+TD KFYL+KWCK SS GIRSI+DW YY
Sbjct: 1035 KGLRCQYIVAREPEGTPVSERAVPVAIFQTDDPEKKFYLQKWCKISSYTGIRSIIDWMYY 1094
Query: 1101 KQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLYKKVREKEDKFRQRKLVDIFSSLKKD 1160
KQRL SAIQK+ITIPAAMQKV+NPV RV HP WL KKV DKFRQ K+VD+FSS KD
Sbjct: 1095 KQRLHSAIQKVITIPAAMQKVANPVLRVRHPYWLEKKVC---DKFRQGKIVDMFSSANKD 1151
Query: 1161 DFLNKTCNAETNLMDENVEDLEDFPKKRRNSVNGPRPIVRCFEVNNEQKTVKTTDQVD 1218
+ D V D+E+F K+ R SV GP+P+ R FEV+ K + D
Sbjct: 1152 ---------HSTTQDNVVADIEEFCKENRPSVKGPKPVARSFEVDRNHSEGKQQESWD 1200
|
|
| UNIPROTKB|E7ETS8 POLE "DNA polymerase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q07864 POLE "DNA polymerase epsilon catalytic subunit A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1C5P2 POLE "DNA polymerase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1196391 Pole "polymerase (DNA directed), epsilon" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-070705-557 pole "polymerase (DNA directed), epsilon" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E1BIF0 POLE "DNA polymerase" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1Q4D5 POLE "DNA polymerase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F5H1D6 POLE "DNA polymerase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| ASPGD|ASPL0000036818 AN3067 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q4WXH8 | DPOE_ASPFU | 2, ., 7, ., 7, ., 7 | 0.5059 | 0.6765 | 0.6031 | yes | no |
| Q07864 | DPOE1_HUMAN | 2, ., 7, ., 7, ., 7 | 0.5079 | 0.6906 | 0.6006 | yes | no |
| F4HW04 | DPOE1_ARATH | 2, ., 7, ., 7, ., 7 | 0.8060 | 0.6966 | 0.6409 | yes | no |
| O93845 | DPOE_EMENI | 2, ., 7, ., 7, ., 7 | 0.5017 | 0.6695 | 0.6030 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.7 | 0.921 |
| 4th Layer | 2.7.7.7 | 0.914 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1988 | |||
| cd05535 | 621 | cd05535, POLBc_epsilon, DNA polymerase type-B epsi | 0.0 | |
| cd05779 | 204 | cd05779, DNA_polB_epsilon_exo, DEDDy 3'-5' exonucl | 1e-133 | |
| pfam08490 | 396 | pfam08490, DUF1744, Domain of unknown function (DU | 1e-110 | |
| COG0417 | 792 | COG0417, PolB, DNA polymerase elongation subunit ( | 3e-63 | |
| COG0417 | 792 | COG0417, PolB, DNA polymerase elongation subunit ( | 1e-48 | |
| pfam03104 | 254 | pfam03104, DNA_pol_B_exo1, DNA polymerase family B | 1e-48 | |
| cd00145 | 323 | cd00145, POLBc, DNA polymerase type-B family catal | 3e-38 | |
| smart00486 | 474 | smart00486, POLBc, DNA polymerase type-B family | 6e-37 | |
| cd05160 | 199 | cd05160, DEDDy_DNA_polB_exo, DEDDy 3'-5' exonuclea | 3e-34 | |
| cd05536 | 371 | cd05536, POLBc_B3, DNA polymerase type-B B3 subfam | 2e-17 | |
| smart00486 | 474 | smart00486, POLBc, DNA polymerase type-B family | 7e-17 | |
| PRK05762 | 786 | PRK05762, PRK05762, DNA polymerase II; Reviewed | 1e-13 | |
| TIGR00592 | 1172 | TIGR00592, pol2, DNA polymerase (pol2) | 3e-13 | |
| pfam00136 | 458 | pfam00136, DNA_pol_B, DNA polymerase family B | 8e-13 | |
| cd05780 | 195 | cd05780, DNA_polB_Kod1_like_exo, DEDDy 3'-5' exonu | 1e-12 | |
| cd05532 | 400 | cd05532, POLBc_alpha, DNA polymerase type-B alpha | 7e-11 | |
| cd05538 | 347 | cd05538, POLBc_Pol_II_B, DNA polymerase type-II B | 6e-10 | |
| cd05537 | 371 | cd05537, POLBc_Pol_II, DNA polymerase type-II subf | 1e-09 | |
| PRK05761 | 787 | PRK05761, PRK05761, DNA polymerase I; Reviewed | 1e-09 | |
| PRK05762 | 786 | PRK05762, PRK05762, DNA polymerase II; Reviewed | 2e-09 | |
| cd05783 | 204 | cd05783, DNA_polB_B1_exo, DEDDy 3'-5' exonuclease | 5e-09 | |
| PTZ00166 | 1054 | PTZ00166, PTZ00166, DNA polymerase delta catalytic | 2e-08 | |
| PRK05761 | 787 | PRK05761, PRK05761, DNA polymerase I; Reviewed | 9e-08 | |
| cd05782 | 208 | cd05782, DNA_polB_like1_exo, Uncharacterized bacte | 7e-06 | |
| cd05777 | 230 | cd05777, DNA_polB_delta_exo, DEDDy 3'-5' exonuclea | 2e-05 | |
| cd00145 | 323 | cd00145, POLBc, DNA polymerase type-B family catal | 8e-05 | |
| pfam13482 | 163 | pfam13482, RNase_H_2, RNase_H superfamily | 3e-04 |
| >gnl|CDD|99918 cd05535, POLBc_epsilon, DNA polymerase type-B epsilon subfamily catalytic domain | Back alignment and domain information |
|---|
Score = 1166 bits (3019), Expect = 0.0
Identities = 415/623 (66%), Positives = 503/623 (80%), Gaps = 5/623 (0%)
Query: 501 NHLLESETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQLLNNLDRDLQYAIKVEGKMDL 560
HLLESETY+GGHVE LESGVFRSD+P FKLDP A ++LL N+D L++AI+VEGK+ L
Sbjct: 1 GHLLESETYVGGHVEALESGVFRSDIPCRFKLDPDAIQELLQNVDETLRFAIEVEGKIPL 60
Query: 561 ESVSNYDEVKNAIMEKLLRLQEEPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEV 620
+ V N++EV+ I+EKL L++ P R E PLIYHLDVAAMYPNIILTNRLQP +IV ++V
Sbjct: 61 DQVENFEEVREEILEKLQSLRDNPKRSEKPLIYHLDVAAMYPNIILTNRLQPDAIVDEDV 120
Query: 621 CTACDFNRPGKTCLRKLEWVWRGEIFMGKRSDYYHLKKQIESE-FVDGTNGHLSKSFLDL 679
C ACDFN+PGKTC R++EW WRGE F R +Y +K+Q+ESE F G KSF +L
Sbjct: 121 CAACDFNKPGKTCQRRMEWAWRGEYFPASRGEYERIKQQLESEKFPPLFPGGPPKSFHEL 180
Query: 680 PKMEQQSRLKDRLKKYCQKAYKRVLDKPVTELREAGICMRENSFYVDTVRSFRDRRYEYK 739
EQ LK RLK Y +K YK+ E R IC REN FYVDTVR+FRDRRYEYK
Sbjct: 181 SPEEQAEELKKRLKDYSRKVYKKTHVTKEEE-RSTTICQRENPFYVDTVRAFRDRRYEYK 239
Query: 740 GLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSM 799
GL+KVWK KL AKA+G++ +I+EA+ MVVLYDSLQLAHKCILNSFYGYVMRKG+RWYSM
Sbjct: 240 GLHKVWKKKLEAAKAAGDAAEIKEAKKMVVLYDSLQLAHKCILNSFYGYVMRKGSRWYSM 299
Query: 800 EMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCVLPGSFPENFTFKTKDLKKKLTI 859
EMAG+V YTGA IIQ AR L+E+IG+PLELDTDGIWC+LP SFPENFTFKTK+ KK+TI
Sbjct: 300 EMAGIVCYTGANIIQMARELVEQIGRPLELDTDGIWCILPKSFPENFTFKTKN-GKKVTI 358
Query: 860 SYPCVMLNVDVARNNTNDQYQTLVDPVSKTYETHSECSIEFEVDGPYKAMILPASKEEGI 919
SYPCVMLN V + TNDQYQ LVDP + TYET SE SI FEVDGPYKAMILPASKEEG
Sbjct: 359 SYPCVMLNHLVHKKFTNDQYQELVDPSTGTYETRSENSIFFEVDGPYKAMILPASKEEGK 418
Query: 920 LIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVAAVA 979
L+KKRYAVFN+DG+LAELKGFE+KRRGEL+LIK+FQ+E+FD FL GST+EECY+AVAAVA
Sbjct: 419 LLKKRYAVFNEDGSLAELKGFEVKRRGELQLIKIFQSEVFDAFLKGSTLEECYAAVAAVA 478
Query: 980 NRWLDLLDNQGKDIADSELIDYISESSTMSKSLADYGEQKSCAVTTARRLSDFLGDTMVK 1039
N WLD+LD++G+++ D EL + ISE+ +MSK L +YG QKS ++TTA+RL++FLGD MVK
Sbjct: 479 NYWLDVLDSKGENLDDEELFELISENRSMSKKLEEYGNQKSTSITTAKRLAEFLGDQMVK 538
Query: 1040 DKGLRCQYIVACEPQGTPVSERAVPVAIFETDAEIMKFYLRKWCK--TSSDVGIRSIVDW 1097
DKGL C+YI++ +P+G+PV+ERA+PVAIF+ + E+ K YLRKW K + D+ IR I+DW
Sbjct: 539 DKGLSCKYIISKKPEGSPVTERAIPVAIFQAEPEVRKHYLRKWLKDPSDEDLDIRDIIDW 598
Query: 1098 SYYKQRLSSAIQKIITIPAAMQK 1120
YY +RL S IQKIITIPAA+Q
Sbjct: 599 DYYIERLGSTIQKIITIPAALQG 621
|
Three DNA-dependent DNA polymerases type B (alpha, delta, and epsilon) have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase (Pol) epsilon has been proposed to play a role in elongation of the leading strand during DNA replication. Pol epsilon might also have a role in DNA repair. The structure of pol epsilon is characteristic of this family with the exception that it contains a large c-terminal domain with an unclear function. Phylogenetic analyses indicate that Pol epsilon is the ortholog to the archaeal Pol B3 rather than to Pol alpha, delta, or zeta. This might be because pol epsilon is ancestral to both archaea and eukaryotes DNA polymerases type B. Length = 621 |
| >gnl|CDD|99822 cd05779, DNA_polB_epsilon_exo, DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase | Back alignment and domain information |
|---|
| >gnl|CDD|219863 pfam08490, DUF1744, Domain of unknown function (DUF1744) | Back alignment and domain information |
|---|
| >gnl|CDD|223494 COG0417, PolB, DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|223494 COG0417, PolB, DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|217371 pfam03104, DNA_pol_B_exo1, DNA polymerase family B, exonuclease domain | Back alignment and domain information |
|---|
| >gnl|CDD|99912 cd00145, POLBc, DNA polymerase type-B family catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|214691 smart00486, POLBc, DNA polymerase type-B family | Back alignment and domain information |
|---|
| >gnl|CDD|176646 cd05160, DEDDy_DNA_polB_exo, DEDDy 3'-5' exonuclease domain of family-B DNA polymerases | Back alignment and domain information |
|---|
| >gnl|CDD|99919 cd05536, POLBc_B3, DNA polymerase type-B B3 subfamily catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|214691 smart00486, POLBc, DNA polymerase type-B family | Back alignment and domain information |
|---|
| >gnl|CDD|235595 PRK05762, PRK05762, DNA polymerase II; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|233037 TIGR00592, pol2, DNA polymerase (pol2) | Back alignment and domain information |
|---|
| >gnl|CDD|215742 pfam00136, DNA_pol_B, DNA polymerase family B | Back alignment and domain information |
|---|
| >gnl|CDD|99823 cd05780, DNA_polB_Kod1_like_exo, DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases | Back alignment and domain information |
|---|
| >gnl|CDD|99915 cd05532, POLBc_alpha, DNA polymerase type-B alpha subfamily catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|99921 cd05538, POLBc_Pol_II_B, DNA polymerase type-II B subfamily catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|99920 cd05537, POLBc_Pol_II, DNA polymerase type-II subfamily catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|235594 PRK05761, PRK05761, DNA polymerase I; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|235595 PRK05762, PRK05762, DNA polymerase II; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|99826 cd05783, DNA_polB_B1_exo, DEDDy 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal family-B DNA polymerases | Back alignment and domain information |
|---|
| >gnl|CDD|240301 PTZ00166, PTZ00166, DNA polymerase delta catalytic subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235594 PRK05761, PRK05761, DNA polymerase I; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|99825 cd05782, DNA_polB_like1_exo, Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases | Back alignment and domain information |
|---|
| >gnl|CDD|99820 cd05777, DNA_polB_delta_exo, DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase | Back alignment and domain information |
|---|
| >gnl|CDD|99912 cd00145, POLBc, DNA polymerase type-B family catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|222166 pfam13482, RNase_H_2, RNase_H superfamily | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1988 | |||
| KOG1798 | 2173 | consensus DNA polymerase epsilon, catalytic subuni | 100.0 | |
| cd05535 | 621 | POLBc_epsilon DNA polymerase type-B epsilon subfam | 100.0 | |
| PTZ00166 | 1054 | DNA polymerase delta catalytic subunit; Provisiona | 100.0 | |
| KOG0969 | 1066 | consensus DNA polymerase delta, catalytic subunit | 100.0 | |
| PRK05762 | 786 | DNA polymerase II; Reviewed | 100.0 | |
| COG0417 | 792 | PolB DNA polymerase elongation subunit (family B) | 100.0 | |
| PRK05761 | 787 | DNA polymerase I; Reviewed | 100.0 | |
| PHA02528 | 881 | 43 DNA polymerase; Provisional | 100.0 | |
| KOG0970 | 1429 | consensus DNA polymerase alpha, catalytic subunit | 100.0 | |
| TIGR00592 | 1172 | pol2 DNA polymerase (pol2). This family is based o | 100.0 | |
| PHA03036 | 1004 | DNA polymerase; Provisional | 100.0 | |
| KOG0968 | 1488 | consensus DNA polymerase zeta, catalytic subunit [ | 100.0 | |
| PF08490 | 396 | DUF1744: Domain of unknown function (DUF1744); Int | 100.0 | |
| cd05534 | 451 | POLBc_zeta DNA polymerase type-B zeta subfamily ca | 100.0 | |
| cd05536 | 371 | POLBc_B3 DNA polymerase type-B B3 subfamily cataly | 100.0 | |
| cd05533 | 393 | POLBc_delta DNA polymerase type-B delta subfamily | 100.0 | |
| cd05532 | 400 | POLBc_alpha DNA polymerase type-B alpha subfamily | 100.0 | |
| cd05537 | 371 | POLBc_Pol_II DNA polymerase type-II subfamily cata | 100.0 | |
| PF00136 | 466 | DNA_pol_B: DNA polymerase family B Several related | 100.0 | |
| cd05538 | 347 | POLBc_Pol_II_B DNA polymerase type-II B subfamily | 100.0 | |
| cd05530 | 372 | POLBc_B1 DNA polymerase type-B B1 subfamily cataly | 100.0 | |
| smart00486 | 471 | POLBc DNA polymerase type-B family. DNA polymerase | 100.0 | |
| cd05531 | 352 | POLBc_B2 DNA polymerase type-B B2 subfamily cataly | 100.0 | |
| cd00145 | 323 | POLBc DNA polymerase type-B family catalytic domai | 100.0 | |
| PHA02524 | 498 | 43A DNA polymerase subunit A; Provisional | 100.0 | |
| PHA03334 | 1545 | putative DNA polymerase catalytic subunit; Provisi | 100.0 | |
| cd05779 | 204 | DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domai | 100.0 | |
| PF03104 | 325 | DNA_pol_B_exo1: DNA polymerase family B, exonuclea | 100.0 | |
| cd05777 | 230 | DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain | 100.0 | |
| cd05781 | 188 | DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of | 99.97 | |
| cd05780 | 195 | DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease dom | 99.97 | |
| cd05778 | 231 | DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease | 99.97 | |
| PHA02523 | 391 | 43B DNA polymerase subunit B; Provisional | 99.96 | |
| TIGR00592 | 1172 | pol2 DNA polymerase (pol2). This family is based o | 99.96 | |
| cd05785 | 207 | DNA_polB_like2_exo Uncharacterized bacterial subgr | 99.96 | |
| cd05783 | 204 | DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of | 99.95 | |
| cd05784 | 193 | DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of | 99.95 | |
| cd05160 | 199 | DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain | 99.95 | |
| cd05776 | 234 | DNA_polB_alpha_exo inactive DEDDy 3'-5' exonucleas | 99.91 | |
| cd05782 | 208 | DNA_polB_like1_exo Uncharacterized bacterial subgr | 99.85 | |
| PHA02563 | 630 | DNA polymerase; Provisional | 99.72 | |
| PF10108 | 209 | DNA_pol_B_exo2: Predicted 3'-5' exonuclease relate | 99.57 | |
| PF13482 | 164 | RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A | 99.25 | |
| COG3359 | 278 | Predicted exonuclease [DNA replication, recombinat | 99.11 | |
| TIGR03491 | 457 | RecB family nuclease, putative, TM0106 family. Mem | 98.21 | |
| PRK06309 | 232 | DNA polymerase III subunit epsilon; Validated | 98.08 | |
| PRK07942 | 232 | DNA polymerase III subunit epsilon; Provisional | 97.95 | |
| PRK06063 | 313 | DNA polymerase III subunit epsilon; Provisional | 97.89 | |
| PRK08517 | 257 | DNA polymerase III subunit epsilon; Provisional | 97.88 | |
| PRK06310 | 250 | DNA polymerase III subunit epsilon; Validated | 97.84 | |
| PHA02735 | 716 | putative DNA polymerase type B; Provisional | 97.8 | |
| PRK05601 | 377 | DNA polymerase III subunit epsilon; Validated | 97.78 | |
| PRK05711 | 240 | DNA polymerase III subunit epsilon; Provisional | 97.76 | |
| PRK06807 | 313 | DNA polymerase III subunit epsilon; Validated | 97.75 | |
| cd06136 | 177 | TREX1_2 DEDDh 3'-5' exonuclease domain of three pr | 97.68 | |
| PRK07883 | 557 | hypothetical protein; Validated | 97.67 | |
| cd06138 | 183 | ExoI_N N-terminal DEDDh 3'-5' exonuclease domain o | 97.66 | |
| TIGR01406 | 225 | dnaQ_proteo DNA polymerase III, epsilon subunit, P | 97.64 | |
| TIGR01405 | 1213 | polC_Gram_pos DNA polymerase III, alpha chain, Gra | 97.6 | |
| cd06130 | 156 | DNA_pol_III_epsilon_like an uncharacterized bacter | 97.56 | |
| PRK07740 | 244 | hypothetical protein; Provisional | 97.53 | |
| cd06137 | 161 | DEDDh_RNase DEDDh 3'-5' exonuclease domain of the | 97.53 | |
| TIGR00573 | 217 | dnaq exonuclease, DNA polymerase III, epsilon subu | 97.52 | |
| PRK09146 | 239 | DNA polymerase III subunit epsilon; Validated | 97.49 | |
| PRK06195 | 309 | DNA polymerase III subunit epsilon; Validated | 97.49 | |
| cd06125 | 96 | DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonucleas | 97.48 | |
| COG2176 | 1444 | PolC DNA polymerase III, alpha subunit (gram-posit | 97.48 | |
| cd06127 | 159 | DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh | 97.47 | |
| cd06131 | 167 | DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonucl | 97.46 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 97.44 | |
| PRK09145 | 202 | DNA polymerase III subunit epsilon; Validated | 97.44 | |
| smart00479 | 169 | EXOIII exonuclease domain in DNA-polymerase alpha | 97.43 | |
| PRK07247 | 195 | DNA polymerase III subunit epsilon; Validated | 97.39 | |
| cd06134 | 189 | RNaseT DEDDh 3'-5' exonuclease domain of RNase T. | 97.37 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 97.36 | |
| PRK05168 | 211 | ribonuclease T; Provisional | 97.31 | |
| TIGR01298 | 200 | RNaseT ribonuclease T. in gamma-subdivision Proteo | 97.31 | |
| PRK11779 | 476 | sbcB exonuclease I; Provisional | 97.17 | |
| PRK07748 | 207 | sporulation inhibitor KapD; Provisional | 97.12 | |
| cd06144 | 152 | REX4_like DEDDh 3'-5' exonuclease domain of RNA ex | 97.08 | |
| cd05532 | 400 | POLBc_alpha DNA polymerase type-B alpha subfamily | 97.01 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 96.95 | |
| cd06145 | 150 | REX1_like DEDDh 3'-5' exonuclease domain of RNA ex | 96.75 | |
| cd06133 | 176 | ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain o | 96.7 | |
| cd06149 | 157 | ISG20 DEDDh 3'-5' exonuclease domain of Interferon | 96.64 | |
| COG0417 | 792 | PolB DNA polymerase elongation subunit (family B) | 96.57 | |
| PRK05762 | 786 | DNA polymerase II; Reviewed | 96.35 | |
| PRK09182 | 294 | DNA polymerase III subunit epsilon; Validated | 96.27 | |
| cd05537 | 371 | POLBc_Pol_II DNA polymerase type-II subfamily cata | 96.21 | |
| cd05536 | 371 | POLBc_B3 DNA polymerase type-B B3 subfamily cataly | 96.21 | |
| PRK06722 | 281 | exonuclease; Provisional | 96.17 | |
| COG0847 | 243 | DnaQ DNA polymerase III, epsilon subunit and relat | 96.1 | |
| PRK00448 | 1437 | polC DNA polymerase III PolC; Validated | 95.9 | |
| PF01612 | 176 | DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00 | 95.73 | |
| TIGR00354 | 1095 | polC DNA polymerase, archaeal type II, large subun | 95.66 | |
| cd00145 | 323 | POLBc DNA polymerase type-B family catalytic domai | 95.62 | |
| PRK04023 | 1121 | DNA polymerase II large subunit; Validated | 95.54 | |
| PF00136 | 466 | DNA_pol_B: DNA polymerase family B Several related | 95.52 | |
| PRK14714 | 1337 | DNA polymerase II large subunit; Provisional | 95.18 | |
| cd05533 | 393 | POLBc_delta DNA polymerase type-B delta subfamily | 95.06 | |
| PRK05359 | 181 | oligoribonuclease; Provisional | 94.99 | |
| PF03175 | 459 | DNA_pol_B_2: DNA polymerase type B, organellar and | 94.97 | |
| cd05538 | 347 | POLBc_Pol_II_B DNA polymerase type-II B subfamily | 94.88 | |
| cd05530 | 372 | POLBc_B1 DNA polymerase type-B B1 subfamily cataly | 94.68 | |
| cd06135 | 173 | Orn DEDDh 3'-5' exonuclease domain of oligoribonuc | 94.63 | |
| PRK14715 | 1627 | DNA polymerase II large subunit; Provisional | 94.4 | |
| cd06139 | 193 | DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease | 94.22 | |
| PTZ00166 | 1054 | DNA polymerase delta catalytic subunit; Provisiona | 93.89 | |
| cd05534 | 451 | POLBc_zeta DNA polymerase type-B zeta subfamily ca | 93.89 | |
| cd05531 | 352 | POLBc_B2 DNA polymerase type-B B2 subfamily cataly | 93.16 | |
| PHA03036 | 1004 | DNA polymerase; Provisional | 93.07 | |
| PTZ00315 | 582 | 2'-phosphotransferase; Provisional | 92.67 | |
| cd06146 | 193 | mut-7_like_exo DEDDy 3'-5' exonuclease domain of C | 92.54 | |
| PRK05755 | 880 | DNA polymerase I; Provisional | 91.24 | |
| PRK05761 | 787 | DNA polymerase I; Reviewed | 90.19 | |
| PRK07983 | 219 | exodeoxyribonuclease X; Provisional | 88.33 | |
| cd06129 | 161 | RNaseD_like DEDDy 3'-5' exonuclease domain of RNas | 88.21 | |
| cd06141 | 170 | WRN_exo DEDDy 3'-5' exonuclease domain of WRN and | 88.14 | |
| cd00007 | 155 | 35EXOc 3'-5' exonuclease. The 35EXOc domain is res | 86.18 | |
| PF03337 | 651 | Pox_F12L: Poxvirus F12L protein; InterPro: IPR0050 | 84.8 | |
| PHA02952 | 648 | EEV maturation protein; Provisional | 83.08 | |
| COG1933 | 253 | Archaeal DNA polymerase II, large subunit [DNA rep | 81.35 |
| >KOG1798 consensus DNA polymerase epsilon, catalytic subunit A [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=0 Score=4400.33 Aligned_cols=1901 Identities=58% Similarity=0.961 Sum_probs=1779.1
Q ss_pred HHHHHhcCCccccCCCceEEEEEeeeecccccccCCCCeEEEEEEEEecCCCeEEEEeCCccEEEEEecCCChHHHHHHH
Q 000161 25 EELEAKLGYDLFSEGDKRLGWLLTFASSSLEDEDTRKVYSCIDLYFVSQDGSTFKSKYKFRPYFYAATKEKMEMDVEAYL 104 (1988)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~g~L~n~~~~~~~d~~~~~~~~~v~ly~~t~dG~~~~v~v~f~PYFyv~~~~~~~~~v~~~l 104 (1988)
|+||+++||.+|.++.++.|||+|||++++.|++.+.+.++|++||+++||.+|+++++|+|||||++.++.+.+|++||
T Consensus 31 d~ld~~~GF~~~~~~~~~~GWLln~~~t~~~d~~t~~~~S~VD~yFi~~dG~~Fk~~~py~PYFyiAt~d~~e~~Ve~yL 110 (2173)
T KOG1798|consen 31 DELDSKLGFERYSEGRERGGWLLNMHPTELEDEDTKKGISAVDLYFIDDDGSSFKVKYPYRPYFYIATRDGMELEVEEYL 110 (2173)
T ss_pred hhHHHhhCceeccCccccceeEEeeccceeeecccCcceeEEEEEEEccCCCeEEEeecccceEEEeeccccHHHHHHHH
Confidence 99999999999999999999999999999999876779999999999999999999999999999999999999999999
Q ss_pred HHhccccceeEEEEEEeeCCCcCcCCCCCeEEEEEEEechhhHHHHHHHHHHHHHhhcccchhHHHHHHhhhcccCCCCc
Q 000161 105 RRRYESQIADIEILEKEDLDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLHVVERNQAKFDAAEAYESILTGKREQRPQ 184 (1988)
Q Consensus 105 ~~~~~~~i~~ie~v~k~dl~~~nhl~g~~~~~lKl~f~~~~~l~~vr~~l~~~~~~n~~~~~~~~~y~~~~~~~~~~~~~ 184 (1988)
+++|++.+++||+|.|+||+++|||+|.++.|+||+|.+.++|.++|+.|+++|++|+.+..+.++|...++.+.....+
T Consensus 111 ~Kky~g~i~~ie~v~kEDL~lkNHLsGlqk~yiKlsF~t~~~L~~vrK~l~~iV~~N~~q~~a~daY~~~ls~~~~~~~q 190 (2173)
T KOG1798|consen 111 RKKYEGQIADIEIVHKEDLDLKNHLSGLQKTYIKLSFDTVNQLVEVRKDLRPIVKRNKAQFDALDAYTNILSGNLNGRDQ 190 (2173)
T ss_pred HHHHhhhhhheeEecHhhcCchhhhhcccccEEEEEEecHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998776655544
Q ss_pred -ccccccccccccCCCccceeeeecCCccceeEEEeeCCCCceEEEeccccCCCCceEEEEEEEEccCCCCCCCCCCCeE
Q 000161 185 -DFLDCIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQRAEVHVCAFDIETTKLPLKFPDADYDII 263 (1988)
Q Consensus 185 -~~~~~i~~i~E~DI~~~~R~~iD~~I~~g~W~~v~~~~~~~~i~~~~~~~~~p~lrvLsfDIEt~s~~~~fPdp~~D~I 263 (1988)
|.++.|+||+|||||||+|++||++||+|.||.|+...+.++++...+++.+|+++||||||||++.|+||||++.|+|
T Consensus 191 ~D~ld~IvDiREYDVPyHvR~sID~~IrvG~WY~V~~~~~~v~i~~r~~~i~radp~VlAFDIETtKlPLKFPDae~DqI 270 (2173)
T KOG1798|consen 191 GDALDSIVDIREYDVPYHVRVSIDLDIRVGQWYNVSYNSGPVEIERRTDLIERADPRVLAFDIETTKLPLKFPDAESDQI 270 (2173)
T ss_pred cchHhhhhhHhhcCCceEEEEeecCCeeeeeeeeeeeeccceEEEecccccccCCceEEEEeeecccCCCCCCCcccceE
Confidence 9999999999999999999999999999999999987777888888899999999999999999999999999999999
Q ss_pred EEEEEEEcCCceEEEcccccccccccccCCCCCCCCCceEEecCCCHHHHHHHHHHHHHhhCCCEEEeeCcccCCHHHHH
Q 000161 264 MMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLE 343 (1988)
Q Consensus 264 i~IS~~~~~~g~li~nreivs~di~~feytp~~~~~g~f~V~~~~dE~eLL~~F~~~I~~~DPDIIvGYNgd~FDlPyL~ 343 (1988)
||||||+||+|++|+||+|||+||+||||||||||+|.|.|++++||.+||++||+||++.+|.||||||||.|||||+.
T Consensus 271 MMISYMiDGqGfLItNREiVs~DIedfEYTPKpE~eG~F~v~Ne~dEv~Ll~RfFeHiq~~kP~iivTyNGDFFDWPFve 350 (2173)
T KOG1798|consen 271 MMISYMIDGQGFLITNREIVSEDIEDFEYTPKPEYEGPFCVFNEPDEVGLLQRFFEHIQEVKPTIIVTYNGDFFDWPFVE 350 (2173)
T ss_pred EEEEEEecCceEEEechhhhccchhhcccCCccccccceEEecCCcHHHHHHHHHHHHHhcCCcEEEEecCccccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCcccCccccCCCCceeeccceEechHHHHhhccCCCCCCCCHHHHHHHHcCCCCCCCChHHHHHHHhhCh
Q 000161 344 TRAAHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKP 423 (1988)
Q Consensus 344 ~Ra~~lGi~l~~~iG~~~~~~~g~~~i~GRihiDl~~~vkrd~~L~~~SysL~~Va~~~LG~~K~dvd~~~i~~~~~~~~ 423 (1988)
+||+.||++|..++||. ++++|+|+.+.++|||||+|||||+|||++|++|++|++++||++|++++|++|.+|+.++|
T Consensus 351 ~Ra~~hGi~m~eEiGF~-~D~~gEyks~~c~HmDcfrWVKRDSYLPqGSqgLKAVTkaKLGYdPvEvdPEdM~~~A~EkP 429 (2173)
T KOG1798|consen 351 ARAKIHGISMNEEIGFR-RDSQGEYKSPFCIHMDCFRWVKRDSYLPQGSQGLKAVTKAKLGYDPVEVDPEDMVRMAMEKP 429 (2173)
T ss_pred HHHHhcCCCcchhcCce-ecccccccccceeehhhhhhhhhcccCCCcccchhHHHHHhhCCCcccCCHHHhhhhhhhCc
Confidence 99999999999999999 88999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHhccchHhhhhhhcCCChHHHhhhhhHHHHHHHHHHHHHHCCeeccCCCCCCchhhhcccc
Q 000161 424 QMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYRNHL 503 (1988)
Q Consensus 424 ~~La~Y~l~Da~lt~~L~~Klv~~~i~~La~i~~l~~~~vlr~Gsg~~~E~LLm~~a~~~n~i~Pnk~~~~~~~~~~g~l 503 (1988)
+.|++|+++||++||+||+||||||||+||+||||+||+|||+||||+||+|||+||++.|+|+|||+..+.+++++||+
T Consensus 430 Q~lasYSVSDAVATYyLYMkYVhPFIFsLctIIPl~PDevLRKGSGTLCE~LLmVeA~~~NIv~PNK~~e~~~~f~dGhl 509 (2173)
T KOG1798|consen 430 QTLASYSVSDAVATYYLYMKYVHPFIFSLCTIIPLNPDEVLRKGSGTLCEALLMVEAYHANIVFPNKHTEDPEKFYDGHL 509 (2173)
T ss_pred hhhhhcchHHHHHHHHHHHHHhhhHHhhhhhccccChHHHHhcCcchHHHHHHHHHHHhcCeecCCcCccchhhhccCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcceeeeccCccccCCCCCCccCChhHHHHHhhhhhhhhHHHHhHhcccccccccchHHHHHHHHHHHHhhccC
Q 000161 504 LESETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQLLNNLDRDLQYAIKVEGKMDLESVSNYDEVKNAIMEKLLRLQEE 583 (1988)
Q Consensus 504 ~~setY~GG~V~~p~~GvY~~d~~~~f~~~~~~~~~l~~~~~~~l~~~~~~e~~~~~~~~~n~~~v~~~i~~~l~~l~~~ 583 (1988)
++||||+||||+++++||||+|||+.|++||+||++||++|+++|+|++++|+++++|+|+||||||++|.++|++|+++
T Consensus 510 leSETYVGGHVE~LesGVFRSDip~~F~~dp~a~~eLi~~l~~~L~~~l~vE~k~~vd~v~nfeEv~~~I~~kL~~lrd~ 589 (2173)
T KOG1798|consen 510 LESETYVGGHVECLESGVFRSDIPTEFRMDPSAYEELIDELGETLDFALTVENKVRVDEVTNFEEVKDEILEKLEELRDV 589 (2173)
T ss_pred eeeeeeechhhhhHhcccccccCcccccCCHHHHHHHHHHHHHHHHHHHhhhcccchhhhcCHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCeEEEEeccccchHHHHhcCCCCCccccccccccccCCCCCCccccccccccccccccCCcchhhHhhhhcccc
Q 000161 584 PIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEIFMGKRSDYYHLKKQIESE 663 (1988)
Q Consensus 584 p~~~~~p~V~~LDf~SLYPsII~t~NL~p~Tiv~~~~c~~c~~n~p~~~c~r~m~w~~~ge~~p~~~~ey~~i~~~l~~e 663 (1988)
|.|.|+|+||||||+|||||||+||+|||.+||+++.|++||||.|+++|.|+|+|+||||++|++++||++|++||++|
T Consensus 590 p~R~E~PlIYHLDVaaMYPNIilTNRLQP~siv~E~~C~~CDfN~P~ktC~Rkm~W~WRGe~~pa~r~EY~~I~~qlesE 669 (2173)
T KOG1798|consen 590 PIREEGPLIYHLDVAAMYPNIILTNRLQPDSIVDEEICAACDFNKPGKTCKRKMEWAWRGEYFPAKRSEYHRIKKQLESE 669 (2173)
T ss_pred CccccCCeEEEEehhhccCceeeecCCCCcccccHhhhccCCCCCCCcchhhhheeeeeeeEecCcchHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCc-ccccccCchHHHHHHHHHHHHHhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHHHHhhh
Q 000161 664 FVDGTNGHL-SKSFLDLPKMEQQSRLKDRLKKYCQKAYKRVLDKPVTELREAGICMRENSFYVDTVRSFRDRRYEYKGLN 742 (1988)
Q Consensus 664 ~f~~~~~g~-~~~~~~L~~~~q~~~lkkrl~~y~~kvy~k~~~~~~~~~r~~~icqre~~f~~~~lr~f~drR~~~K~l~ 742 (1988)
.||+..+-. ++.|++|+.+||++.+|+|+++||+|+|+|++.+++++ |+++||||||||||+|||.||||||+||++.
T Consensus 670 ~f~~~~~~~~~k~F~~L~~~eq~~~~kkRl~~Ysrk~Y~rv~~~~i~e-Ret~ICqRENpFYVdTVrsFRDRRYeyK~L~ 748 (2173)
T KOG1798|consen 670 SFPAGAPFSPSKSFHELSREEQAAKLKKRLKDYSRKVYHRVKDTEIEE-RETTICQRENPFYVDTVRSFRDRRYEYKGLH 748 (2173)
T ss_pred cCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHhHhcccchhh-hhcchhhccCchhhhhHHHhhhhhhHHHHHH
Confidence 999877766 89999999999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred hhhhhhhHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 000161 743 KVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEK 822 (1988)
Q Consensus 743 K~~k~~~~~a~~~~d~~~~~e~~~~~~lyds~QlA~K~ilNS~YGy~g~~~sR~ys~e~A~~VT~~Gr~iI~~a~~lve~ 822 (1988)
|+||+++++|+..||.++++|+++|.++|||+|+|||||+|||||||||||||||||||||+||.||++||++||++||+
T Consensus 749 K~wkg~ls~a~~sg~~a~i~eak~mvVlYdSLQLAHKcILNSFYGYVMRKGsRWYSMEMAGIvc~TGAnIIq~AR~lVEr 828 (2173)
T KOG1798|consen 749 KVWKGKLSAAKASGDLARIKEAKKMVVLYDSLQLAHKCILNSFYGYVMRKGSRWYSMEMAGIVCLTGANIIQMARELVER 828 (2173)
T ss_pred HHHHHHHhhhhccCchhhHHhhhheEEehHhHHHHHHHHHhhhhhhhhccccchheeehhheeeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEccceeeEEcCCCCCcccccccccccccccccccccccchhhhccccchhhhhccCCccccccccccceeEEee
Q 000161 823 IGKPLELDTDGIWCVLPGSFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVSKTYETHSECSIEFEV 902 (1988)
Q Consensus 823 ~G~~vygDTDSI~~~lp~~~pe~~~~k~~~g~k~i~~sy~~~~ln~~V~~~~tN~~y~~l~~~~~~~y~~~s~~~I~fE~ 902 (1988)
+|+|+++|||||||++|++|||||+||+++| |+++|||||+|||++|+++|||||||+|+||.+..|.++|+|||+|||
T Consensus 829 iGrPLELDTDGIWCilP~SFPEnf~Fk~~n~-kkvtiSYPc~mLN~~V~e~fTN~QYq~L~dp~~~~Y~t~SEnSIfFEV 907 (2173)
T KOG1798|consen 829 IGRPLELDTDGIWCILPGSFPENFTFKLKNG-KKVTISYPCVMLNHLVHEGFTNHQYQELVDPVRLTYVTRSENSIFFEV 907 (2173)
T ss_pred hCCCeeccCCceEEeccCCCccceEEEecCC-cEEEEechHHHHHHHHHhccchhhHHHhcCcccceeeecccceEEEEe
Confidence 9999999999999999999999999999999 889999999999999999999999999999999999999999999999
Q ss_pred eceeeeeecccccccCcccccceEEEcCCCCEEEEEeeeeccCChhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 000161 903 DGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVAAVANRW 982 (1988)
Q Consensus 903 Dg~Y~~miLp~s~~~~~~~KKRYa~~~~dG~~~e~KG~E~kRRd~~~liK~~q~~v~~~~L~g~~lee~~~~v~~v~~~~ 982 (1988)
||||+|||||+|+||||++|||||+||+||+++|+||||+||||+++|||.||+++|+.||+|.||||||.+|+.|+++|
T Consensus 908 DGPYkAMILPaSkEEGk~lKKRYAVFN~DGsLAELKGFEiKRRGEL~lIK~FQs~lF~~FL~GstLEEcY~aVA~Vad~W 987 (2173)
T KOG1798|consen 908 DGPYKAMILPASKEEGKLLKKRYAVFNEDGSLAELKGFEIKRRGELKLIKVFQSELFKVFLKGSTLEECYSAVAAVADRW 987 (2173)
T ss_pred cCceeEEeeccchhhhhhhhheeEEecCCCchhhhcCceeeecchhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCchhhhhhhhhccccccChhhhCCCCChHHHHHHHHHhhcCCCcccCCCCeeEEEEEcCCCCCCCcccc
Q 000161 983 LDLLDNQGKDIADSELIDYISESSTMSKSLADYGEQKSCAVTTARRLSDFLGDTMVKDKGLRCQYIVACEPQGTPVSERA 1062 (1988)
Q Consensus 983 ~d~L~~~~~~~~~~eLi~~i~~~k~lsK~l~eY~~~k~~~v~~A~rl~e~lG~~~~~~~G~~i~YVI~~~p~g~~v~eRa 1062 (1988)
+|+|+++|.+++|+||++||+++++|||++++|++|||++|+||+||++|||++|++++|++|+|||++.|.|+||+|||
T Consensus 988 LDiL~s~G~~l~D~eL~elISEnrSMSk~L~dYg~QKStsitTAkRLaeFLGd~MvKDkGL~C~yIIs~~P~g~PVtERA 1067 (2173)
T KOG1798|consen 988 LDILDSHGADLTDSELLELISENRSMSKKLEDYGGQKSTSITTAKRLAEFLGDDMVKDKGLACRYIISRKPEGAPVTERA 1067 (2173)
T ss_pred HHHHHhccCCCCcHHHHHHHhhchhhhhhHHHhccccchHHHHHHHHHHHhchhhhhccCceeEEEEEecCCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcchHHHHHHHHHhhhcCCC--CCCCccccCHHHHHHhhhhhhhheeechhhhhhccCCCCCcchhhhhhhhhhc
Q 000161 1063 VPVAIFETDAEIMKFYLRKWCKTSS--DVGIRSIVDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLYKKVRE 1140 (1988)
Q Consensus 1063 ~p~~if~~~~~~~~~~l~~w~~~~~--~~d~~~~iD~~YYierl~~~i~ki~~iPa~lq~~~npv~rv~~p~w~~~~~~~ 1140 (1988)
||++||++|+.||+||||||+|+++ |+|||.+|||+||++||+++||||||||||||+|.||||||+|||||++++++
T Consensus 1068 IPVAIF~ae~~vk~~fLRkW~k~~sl~d~dIR~IiDWdYY~eRLgSaIQKiItIPAAlQ~VsNPVpRv~hPdWL~kkv~~ 1147 (2173)
T KOG1798|consen 1068 IPVAIFQAEPPVKKHFLRKWTKDSSLEDTDIRAIIDWDYYRERLGSAIQKIITIPAALQGVSNPVPRVPHPDWLQKKVAE 1147 (2173)
T ss_pred ceeEEEecCcHHHHHHHHHHhccCccccCChheeeehHHHHHHHHHHHHHHhhhHHHHhccCCCCCCCCCcHHHHhhhcc
Confidence 9999999999999999999999999 69999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccHHHhhhccccCcccccccccccccCCCCCCCCCCCcccCCCCCCCCCCccccccccccccccccccccchh
Q 000161 1141 KEDKFRQRKLVDIFSSLKKDDFLNKTCNAETNLMDENVEDLEDFPKKRRNSVNGPRPIVRCFEVNNEQKTVKTTDQVDSL 1220 (1988)
Q Consensus 1141 ~~~~~kq~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1220 (1988)
++|+|+|++|.++|+..++.|.+ +. .+. .||||++.......+.+.++++++.++..++.
T Consensus 1148 k~dk~rQ~ki~~~Fs~~~~~~~t---~~-----n~~--~DiED~~~~~~~~~~~~~~Var~~~~~~~~~e---------- 1207 (2173)
T KOG1798|consen 1148 KNDKFRQKKIVDIFSLANKPPTT---MD-----NKV--PDIEDFGSETRPDVKGPIPVARKTKKKENQKE---------- 1207 (2173)
T ss_pred chhhhhhhhHHHHHhhcCCCCcc---cc-----cCC--CChHHhhcccCcccCCCcccchhhhhcchhhh----------
Confidence 99999999999999987665542 11 123 39999977665423444355554444433210
Q ss_pred hcccCCCccccCCcCcccccCCCCCCcccchHHHHHHHHHHHHHHHHHHHHhhccccccccccCCccccccccccccccc
Q 000161 1221 RQQLEPSEVSDQQPSSQNAIDTENIDRIVDYKGWLELKKRKWKDNLDRRKKQKLGSLRASHQANGVSESLGDMINHKEAQ 1300 (1988)
Q Consensus 1221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~k~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 1300 (1988)
++++.. ..+....++.+++...++|.+||.++|+||+.|++.|+||+...+.. ..
T Consensus 1208 ~q~~s~------~~e~~~i~~q~~~~~~~~y~~WL~~~KkKWk~q~~~k~rr~~~~~~~-------------------~~ 1262 (2173)
T KOG1798|consen 1208 KQQNSG------DVEFPEILLQEPDKVTDGYQGWLRFLKKKWKVQARDKKRRRQLKGNT-------------------SR 1262 (2173)
T ss_pred HHhccC------CCCcchhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------------------cc
Confidence 011111 11123345555566799999999999999999999998888654332 13
Q ss_pred cccchhhHHHHHHHhhccCceeEEEEeeCCCCceEEEEEEEcCeEEEEEEEeceEEEEeccCCCCCCCCccccccccCCC
Q 000161 1301 RRTGVGSYFRRQETAMTRCHWQIIQLVPSSQSGVFLAWVVVEGIMVRIPITVPRLFYLNSKDPIVEKFPGRRVNKTLPHG 1380 (1988)
Q Consensus 1301 ~~~~~~~~~~~~~~~~~~~~w~i~q~~~~~~~g~~~~~~~~~~~~~~~~~~vpr~~y~n~~~~~~~~~~~~~~~~~lP~~ 1380 (1988)
.+..+++.++.+++++++++||||||.+|.+||.|.+||+|+|.||.|+++|||+||||+|.+..|....++++++||||
T Consensus 1263 d~~~~~~~v~g~~ea~~~~~w~Ilqv~~s~~~g~f~~wv~v~g~m~~I~~~Ipr~fyv~~k~~~~~~~~~ek~n~iLPh~ 1342 (2173)
T KOG1798|consen 1263 DSHVVEKVVRGAAEALTNSDWHILQVVESGQAGQFFAWVLVRGLMHKIRLSIPRVFYVNSKAETGENFKIEKSNAILPHG 1342 (2173)
T ss_pred cHHHHHHHHHhHHHhhhcCCceEEEEEEcCCCceEEEEEEeccceEEEEEEcCcEEEEeccccccccccchhhhccCCCC
Confidence 44568899999999999999999999999999999999999999999999999999999999988777789999999999
Q ss_pred -CCCCCeEEEEcChHHHHHHHHHHHhhhCCCCcc----------------------------------------------
Q 000161 1381 -RRSFNLIEVMIDEDQFRKESKKLAALLADPEVE---------------------------------------------- 1413 (1988)
Q Consensus 1381 -~~~~~L~~~~~~e~~~~~~~~~~~~~l~~~~v~---------------------------------------------- 1413 (1988)
..+..||++++||++|+++..+++++|+||+|+
T Consensus 1343 ~~t~~~l~~~~i~E~~f~~e~~~~~~~l~~p~I~GiyEtkvp~~fraIl~lG~~~~~~~~~~lg~~~q~g~~l~~l~~~~ 1422 (2173)
T KOG1798|consen 1343 PKTVNMLYEIRIPEDQFLEEKKKIAAELADPSIEGIYETKVPLEFRAILQLGCVCRFNNKAKLGGGTQDGFELENLHMMS 1422 (2173)
T ss_pred CCcccceEEEEcCHHHHHHHHHHHHHHhcCcccceeecccCChHHHHHHhhcceeeeccccccCCccccceehhhccccc
Confidence 668889999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q 000161 1414 -------------------------------------------------------------------------------- 1413 (1988)
Q Consensus 1414 -------------------------------------------------------------------------------- 1413 (1988)
T Consensus 1423 ~~e~~yLe~~si~~vylyhf~~~~r~vy~lf~~~~~~~s~~v~~~~~d~~~~~l~~~y~~~~~~~~ee~s~~~~~~~~~~ 1502 (2173)
T KOG1798|consen 1423 TAECSYLEGHSIRLVYLYHFSQSGRAVYSLFIPSSKLASAFVLDPSGDNQMPSLGSLYERLFRDLLEELSPLCLSPDGIK 1502 (2173)
T ss_pred ccccccccCcccceEEEEeeccccceeeEEeccccceeEEEEEecCCccccccHHHHHHHHHHHHHHhcCccccCCCCce
Confidence
Q ss_pred -------------------------------------------------------------------cccccHHHHHHHH
Q 000161 1414 -------------------------------------------------------------------VLGWQQNAAKIGM 1426 (1988)
Q Consensus 1414 -------------------------------------------------------------------~L~WQ~~~akr~i 1426 (1988)
+|+||+++||+|+
T Consensus 1503 f~V~~~~~~~ka~r~l~~~l~~Yree~~~~~l~vlesp~~~~l~~~i~~l~efP~V~i~~~e~~~~~~l~Wq~~~ak~~i 1582 (2173)
T KOG1798|consen 1503 FEVIYSGDPSKAERQLQRALREYREERCGPTLLVLESPDPTRLKEGIPALEEFPCVRIPRNEDDNSYPLSWQRHAAKRMI 1582 (2173)
T ss_pred EEEEEcCCHHHHHHHHHHHHHHHHHhccCceEEEEeCCchHHHHhcCCChhhCCceeeeccccccccccccchHHHHHHH
Confidence 7999999999999
Q ss_pred HHHHhhhHHHHHHHHHhhccce----------------------------eccCCCCCCCCCCcccccccccccc----C
Q 000161 1427 QRCAASSQWFNERISLARYAHI----------------------------LWISDDGVPDLGGTSEEDECFADEV----H 1474 (1988)
Q Consensus 1427 ~hyl~~~~wl~~~i~laRY~~I----------------------------LW~S~~~~PDlGG~E~D~~~~~~~~----~ 1474 (1988)
+||+++++||.+++++|||+|| ||||++++|||||+|+|+..+.+++ +
T Consensus 1583 ~h~~a~~~wl~~~i~~SRY~~VPigNl~~D~~~f~iD~~faR~Lrk~~~vLW~s~~~~PDlGGie~d~~~~s~~~~~~s~ 1662 (2173)
T KOG1798|consen 1583 QHYLASGSWLSHRIKLSRYSHVPIGNLPEDWLTFIIDLFFARKLRKHNHVLWWSKNGVPDLGGIENDEMLLSSELQTTSD 1662 (2173)
T ss_pred HHHHhHHHHHHHHHHHHHhcCCcccCCchHHHHHHHHHHHHHHHHhcCeeEEecCCCCCCCCcccchhhhhhHHhccccc
Confidence 9999999999999999999999 9999999999999999976665443 4
Q ss_pred CceeccCCcceeEEEEEEecchhHHHHHhhhhcccccCCcccc--ccCCCCCC-CCCCCcccccccCCChhHHHHHHHHH
Q 000161 1475 QPVLTYPGAYRKVSVELKIHHLSVNALLKSNQVNEMEGGGLFG--FDQDMNSG-PYNNELCGFDETTSSAPAFRVVKQLI 1551 (1988)
Q Consensus 1475 ~~~in~pG~Y~svcvEl~i~~LaVnaiL~Ss~ine~EG~~~~~--f~~~~~~~-~~~~~~~~~~e~~~~~~af~iLr~mV 1551 (1988)
.+++|+||+|++|||||+++||||||||+|++|||+||++.++ ||.++.+. .+..++..|||.+.|+++|+|||+||
T Consensus 1663 ~~~ln~~G~Y~~v~vel~l~nlavntll~S~lvne~EG~d~~g~~~dv~~~~~~~d~~~~~~~De~a~~~~~f~VLk~ll 1742 (2173)
T KOG1798|consen 1663 TVELNRPGAYSTVCVELKLSNLAVNTLLQSALVNEMEGADFLGVTFDVNDRTAAEDDLTGACYDETALCAQAFRVLKQLL 1742 (2173)
T ss_pred chhhccccccceeEEEEEehHHHHHHHHHHhhhhhhhccccccccccccccchhhccccccccccccchHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999655 56665432 22334577999999999999999999
Q ss_pred HHHHHHHHhcCCccHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHhHcCCeEEEEeCCeEEEEcCCCC
Q 000161 1552 QRCLTDAVTSGNVFADAILQHLYRWLCSPHSKLHDPVLHRILHKVMQKVFAMLLAEFRKLGATIIFANFSKVIIDTGKFD 1631 (1988)
Q Consensus 1552 ~~w~~da~~~~n~~AD~ll~~~~RWl~sp~S~LyDPaL~r~v~~LmkK~flqLlaEfkRLGs~VVyAd~~riil~T~K~~ 1631 (1988)
++||+|++++||.+||.+|+||+|||+||+|+|||||||++||+||||+|+||++|||||||.|||||||+|||+|+|.+
T Consensus 1743 k~~~~d~~~~gN~~AD~iv~~l~~Wl~spss~L~dpaL~~~vh~lmkK~fl~L~~e~~rlGa~iIyA~~nkili~T~K~~ 1822 (2173)
T KOG1798|consen 1743 KRWVLDAAKSGNIYADLIVQHLSRWLRSPSSKLHDPALHRHVHVLMKKLFLQLLAELRRLGAIIIYADFNKILINTGKFS 1822 (2173)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHcCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEecCCEEEEecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHHhhccccccceecchhchheeeeeecCCCccccccccCCCCCCCcccceeeecchhhcCcHHHHHHH
Q 000161 1632 LSAAKAYCDSLLKALQTRELFEWIELEPVHFWHSLLFMDQYNYGGIPARADESLDDDSQVDIVSSWNIAEYLPKEIQDHF 1711 (1988)
Q Consensus 1632 v~~A~ay~~yi~~si~~~~lF~~l~L~~~~yW~~LlwmD~~NygGi~~~~~~~~~~~~~~~i~~~W~I~~fLP~~~q~~F 1711 (1988)
+++|++|++||+++++++++|++|+|++++|||+|+|||++||||..|..+. +.++++.+++.+|+++++||+.+|.+|
T Consensus 1823 ~e~A~~y~e~l~ksi~t~~~f~~l~i~~~r~wd~llwmD~~n~~g~~gi~~~-e~~~~~~~~~~~w~~~~~l~~~~e~e~ 1901 (2173)
T KOG1798|consen 1823 VEAAKAYSEYLLKSISTLPVFHLLDINPVRYWDSLLWMDAHNYGGHAGIRIS-EKTNSEPTIVVKWDVEEHLPPEIEPEA 1901 (2173)
T ss_pred HHHHHHHHHHHHHhhhcccchhheeccHHHHHHHHhhhccccccccceeeeh-hhccCCCccccchhhhhcCCccccccc
Confidence 9999999999999999999999999999999999999999999998887666 666777889999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhcccCCCCCCCccchhhhh-hhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHhh---hc
Q 000161 1712 VLVVSEFMYIPWKHAQKLAASRASLQEGSSCTPSITVAAAE-NFESHIVQYVKGEISSYFTGKLLSIVRDAIHHM---KK 1787 (1988)
Q Consensus 1712 ~~~v~~~l~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~fs~~L~~~v~~l~~~~---~~ 1787 (1988)
+.|+..+++++++.+++......+ ..+......++ ...+.........+.+.+++++++.+.+++..+ ..
T Consensus 1902 e~w~~~~~~~~~~~~q~~f~~~v~------~~~~~f~~~nk~~~~es~~~~~~d~~~~~l~~~~~~l~~~~~~~~~~~~~ 1975 (2173)
T KOG1798|consen 1902 EIWKILEEDPTEASKQEYFLIIVG------AYIVKFKEENKDGSFESAEGGMSDYLSEPLGERVYGLIVKIQEFILDNNT 1975 (2173)
T ss_pred ccchhhhhhhhHHhHHHHHHhhhh------heeEEEeeccCcchhhhcccchhHhhhhHHHHHHHHHHHHhhhhhcCccc
Confidence 999999999999999975332111 01111100110 111111111334455556666666666665533 44
Q ss_pred cCCCCCC-CCCCccccccccCCCchhHHHHHHHHHHcCCcccHHHHHHHHHHHHhhcCcccCCCCCcccCCCCceeeCcc
Q 000161 1788 MNNDQHN-SPGVMQTAANIHKVDAPLEFIKHVCAAFALDQNVQHDVLVMRKNLLKYVRVREFAPEAEFRDPCPSFILPNV 1866 (1988)
Q Consensus 1788 ~~~~~FP-lpGs~l~~~~~~~~npaLEfVK~lc~VLsLd~~~~~eV~~LRr~LL~l~~V~EFS~eA~f~~P~~sl~L~~V 1866 (1988)
..+..|| |||||| ..+||+|||||.||+||+||++++.+|+.|||+||++++|+||++||+|+|||.||+||+|
T Consensus 1976 e~~~~~p~lpgs~l-----~~~n~~le~ik~ic~vlsLdq~~q~~v~~lrk~llrll~v~Ef~~ea~f~dp~~sl~lp~v 2050 (2173)
T KOG1798|consen 1976 EIDVSFPVLPGSHL-----NLGNPALEFIKIICAVLSLDQNVQLEVRVLRKNLLRLLHVKEFAEEAEFRDPSRSLVLPNV 2050 (2173)
T ss_pred chhhcccccccccc-----ccCCchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHHHhhhccCCCCcceeeCCc
Confidence 5678999 999999 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccccccCcccCC-CccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHhhcccccCcchHHhhhcccccCCc
Q 000161 1867 ICSYCNDCRDLDLCRDMALLA-QDWHCAMPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCIRCNQVKAAHLAEQCAC 1945 (1988)
Q Consensus 1867 iC~~Cn~~rDLDlCrD~~~~~-~~W~C~~~~C~~~yd~~~IE~~LI~~v~~~~~~YqlQDL~C~KC~~vk~~~ls~~C~C 1945 (1988)
.|++|+++||+|||||+++.. +.|.|.. |+++||+.+||+.||++|++++++||+|||+|+||++||.++|+++|+|
T Consensus 2051 ~C~sC~~~~d~d~crd~~~~~e~~~sC~~--C~k~yd~~~ie~~l~~~l~~~l~~y~lQDl~C~rC~~Vk~~~ls~~C~C 2128 (2173)
T KOG1798|consen 2051 ACSSCGFYRDLDLCRDSALSTEKIFSCAD--CQKPYDKDAIEETLVDMLRQLLTLYQLQDLVCSRCKQVKETSLSEYCEC 2128 (2173)
T ss_pred ccccchhhhhhhhhcccccCccceeehhh--hCCcCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhCccchhhhhhcccc
Confidence 999999999999999999864 6799999 9999999999999999999999999999999999999999999999999
Q ss_pred CCCceeccChhHHHHHHHHHHHHHHHhCChhHHHHHHHHHhc
Q 000161 1946 AGSFRCKEDASDFRSKMQIFLNIANRQGFQLLQECTSWILEV 1987 (1988)
Q Consensus 1946 sG~~~~t~~~~~~~~~l~v~~~vA~~~~~~~L~e~v~~~l~~ 1987 (1988)
||.|.+++++++|.+++.||.+||++|+|.+|+|+++|+|.+
T Consensus 2129 ~G~f~~~~~~~~f~~~~~if~~va~~~~f~~L~e~i~wil~~ 2170 (2173)
T KOG1798|consen 2129 SGAFRLQISPEEFRKRASIFDDVAKRYGFSLLQECISWILKN 2170 (2173)
T ss_pred ccccccccCHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999864
|
|
| >cd05535 POLBc_epsilon DNA polymerase type-B epsilon subfamily catalytic domain | Back alignment and domain information |
|---|
| >PTZ00166 DNA polymerase delta catalytic subunit; Provisional | Back alignment and domain information |
|---|
| >KOG0969 consensus DNA polymerase delta, catalytic subunit [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK05762 DNA polymerase II; Reviewed | Back alignment and domain information |
|---|
| >COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK05761 DNA polymerase I; Reviewed | Back alignment and domain information |
|---|
| >PHA02528 43 DNA polymerase; Provisional | Back alignment and domain information |
|---|
| >KOG0970 consensus DNA polymerase alpha, catalytic subunit [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR00592 pol2 DNA polymerase (pol2) | Back alignment and domain information |
|---|
| >PHA03036 DNA polymerase; Provisional | Back alignment and domain information |
|---|
| >KOG0968 consensus DNA polymerase zeta, catalytic subunit [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF08490 DUF1744: Domain of unknown function (DUF1744); InterPro: IPR013697 This domain is found on the catalytic subunit of DNA polymerase epsilon | Back alignment and domain information |
|---|
| >cd05534 POLBc_zeta DNA polymerase type-B zeta subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd05536 POLBc_B3 DNA polymerase type-B B3 subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd05533 POLBc_delta DNA polymerase type-B delta subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd05532 POLBc_alpha DNA polymerase type-B alpha subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd05537 POLBc_Pol_II DNA polymerase type-II subfamily catalytic domain | Back alignment and domain information |
|---|
| >PF00136 DNA_pol_B: DNA polymerase family B Several related DNA polymerases were too dissimilar to be included | Back alignment and domain information |
|---|
| >cd05538 POLBc_Pol_II_B DNA polymerase type-II B subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd05530 POLBc_B1 DNA polymerase type-B B1 subfamily catalytic domain | Back alignment and domain information |
|---|
| >smart00486 POLBc DNA polymerase type-B family | Back alignment and domain information |
|---|
| >cd05531 POLBc_B2 DNA polymerase type-B B2 subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd00145 POLBc DNA polymerase type-B family catalytic domain | Back alignment and domain information |
|---|
| >PHA02524 43A DNA polymerase subunit A; Provisional | Back alignment and domain information |
|---|
| >PHA03334 putative DNA polymerase catalytic subunit; Provisional | Back alignment and domain information |
|---|
| >cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase | Back alignment and domain information |
|---|
| >PF03104 DNA_pol_B_exo1: DNA polymerase family B, exonuclease domain Several related DNA polymerases were too dissimilar to be included | Back alignment and domain information |
|---|
| >cd05777 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase | Back alignment and domain information |
|---|
| >cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases | Back alignment and domain information |
|---|
| >cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases | Back alignment and domain information |
|---|
| >cd05778 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta, a family-B DNA polymerase | Back alignment and domain information |
|---|
| >PHA02523 43B DNA polymerase subunit B; Provisional | Back alignment and domain information |
|---|
| >TIGR00592 pol2 DNA polymerase (pol2) | Back alignment and domain information |
|---|
| >cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases | Back alignment and domain information |
|---|
| >cd05783 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal family-B DNA polymerases | Back alignment and domain information |
|---|
| >cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases | Back alignment and domain information |
|---|
| >cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases | Back alignment and domain information |
|---|
| >cd05776 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase | Back alignment and domain information |
|---|
| >cd05782 DNA_polB_like1_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases | Back alignment and domain information |
|---|
| >PHA02563 DNA polymerase; Provisional | Back alignment and domain information |
|---|
| >PF10108 DNA_pol_B_exo2: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; InterPro: IPR019288 This entry represents various prokaryotic 3'-5' exonucleases and hypothetical proteins | Back alignment and domain information |
|---|
| >PF13482 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 2AJQ_F 1T8E_A 1T7P_A 1SKR_A 1X9W_A 1TK8_A 1TK0_A 1SL2_A | Back alignment and domain information |
|---|
| >COG3359 Predicted exonuclease [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR03491 RecB family nuclease, putative, TM0106 family | Back alignment and domain information |
|---|
| >PRK06309 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK07942 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >PRK06063 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >PRK08517 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >PRK06310 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PHA02735 putative DNA polymerase type B; Provisional | Back alignment and domain information |
|---|
| >PRK05601 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK05711 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >PRK06807 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins | Back alignment and domain information |
|---|
| >PRK07883 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >cd06138 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins | Back alignment and domain information |
|---|
| >TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial | Back alignment and domain information |
|---|
| >TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type | Back alignment and domain information |
|---|
| >cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III | Back alignment and domain information |
|---|
| >PRK07740 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins | Back alignment and domain information |
|---|
| >TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family | Back alignment and domain information |
|---|
| >PRK09146 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK06195 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily | Back alignment and domain information |
|---|
| >COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >cd06127 DEDDh DEDDh 3'-5' exonuclease domain family | Back alignment and domain information |
|---|
| >cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins | Back alignment and domain information |
|---|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK09145 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases | Back alignment and domain information |
|---|
| >PRK07247 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T | Back alignment and domain information |
|---|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
| >PRK05168 ribonuclease T; Provisional | Back alignment and domain information |
|---|
| >TIGR01298 RNaseT ribonuclease T | Back alignment and domain information |
|---|
| >PRK11779 sbcB exonuclease I; Provisional | Back alignment and domain information |
|---|
| >PRK07748 sporulation inhibitor KapD; Provisional | Back alignment and domain information |
|---|
| >cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins | Back alignment and domain information |
|---|
| >cd05532 POLBc_alpha DNA polymerase type-B alpha subfamily catalytic domain | Back alignment and domain information |
|---|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins | Back alignment and domain information |
|---|
| >cd06133 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins | Back alignment and domain information |
|---|
| >cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins | Back alignment and domain information |
|---|
| >COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK05762 DNA polymerase II; Reviewed | Back alignment and domain information |
|---|
| >PRK09182 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >cd05537 POLBc_Pol_II DNA polymerase type-II subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd05536 POLBc_B3 DNA polymerase type-B B3 subfamily catalytic domain | Back alignment and domain information |
|---|
| >PRK06722 exonuclease; Provisional | Back alignment and domain information |
|---|
| >COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK00448 polC DNA polymerase III PolC; Validated | Back alignment and domain information |
|---|
| >PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides | Back alignment and domain information |
|---|
| >TIGR00354 polC DNA polymerase, archaeal type II, large subunit | Back alignment and domain information |
|---|
| >cd00145 POLBc DNA polymerase type-B family catalytic domain | Back alignment and domain information |
|---|
| >PRK04023 DNA polymerase II large subunit; Validated | Back alignment and domain information |
|---|
| >PF00136 DNA_pol_B: DNA polymerase family B Several related DNA polymerases were too dissimilar to be included | Back alignment and domain information |
|---|
| >PRK14714 DNA polymerase II large subunit; Provisional | Back alignment and domain information |
|---|
| >cd05533 POLBc_delta DNA polymerase type-B delta subfamily catalytic domain | Back alignment and domain information |
|---|
| >PRK05359 oligoribonuclease; Provisional | Back alignment and domain information |
|---|
| >PF03175 DNA_pol_B_2: DNA polymerase type B, organellar and viral; InterPro: IPR004868 This entry is found in DNA polymerase type B proteins | Back alignment and domain information |
|---|
| >cd05538 POLBc_Pol_II_B DNA polymerase type-II B subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd05530 POLBc_B1 DNA polymerase type-B B1 subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd06135 Orn DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins | Back alignment and domain information |
|---|
| >PRK14715 DNA polymerase II large subunit; Provisional | Back alignment and domain information |
|---|
| >cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases | Back alignment and domain information |
|---|
| >PTZ00166 DNA polymerase delta catalytic subunit; Provisional | Back alignment and domain information |
|---|
| >cd05534 POLBc_zeta DNA polymerase type-B zeta subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd05531 POLBc_B2 DNA polymerase type-B B2 subfamily catalytic domain | Back alignment and domain information |
|---|
| >PHA03036 DNA polymerase; Provisional | Back alignment and domain information |
|---|
| >PTZ00315 2'-phosphotransferase; Provisional | Back alignment and domain information |
|---|
| >cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins | Back alignment and domain information |
|---|
| >PRK05755 DNA polymerase I; Provisional | Back alignment and domain information |
|---|
| >PRK05761 DNA polymerase I; Reviewed | Back alignment and domain information |
|---|
| >PRK07983 exodeoxyribonuclease X; Provisional | Back alignment and domain information |
|---|
| >cd06129 RNaseD_like DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins | Back alignment and domain information |
|---|
| >cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins | Back alignment and domain information |
|---|
| >cd00007 35EXOc 3'-5' exonuclease | Back alignment and domain information |
|---|
| >PF03337 Pox_F12L: Poxvirus F12L protein; InterPro: IPR005005 The vaccinia virus F12L gene encodes a 65 kDa protein that is expressed late during infection and is important for plaque formation, EEV production and virulence | Back alignment and domain information |
|---|
| >PHA02952 EEV maturation protein; Provisional | Back alignment and domain information |
|---|
| >COG1933 Archaeal DNA polymerase II, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1988 | ||||
| 2jgu_A | 775 | Crystal Structure Of Dna-directed Dna Polymerase Le | 2e-22 | ||
| 2jgu_A | 775 | Crystal Structure Of Dna-directed Dna Polymerase Le | 7e-11 | ||
| 1qqc_A | 773 | Crystal Structure Of An Archaebacterial Dna Polymer | 4e-21 | ||
| 3a2f_A | 775 | Crystal Structure Of Pyrococcus Furiosus Dna Polyme | 5e-21 | ||
| 3a2f_A | 775 | Crystal Structure Of Pyrococcus Furiosus Dna Polyme | 1e-10 | ||
| 4ahc_A | 775 | Crystal Structure Of An Evolved Replicating Dna Pol | 1e-20 | ||
| 4ahc_A | 775 | Crystal Structure Of An Evolved Replicating Dna Pol | 2e-10 | ||
| 1d5a_A | 733 | Crystal Structure Of An Archaebacterial Dna Polymer | 2e-20 | ||
| 1tgo_A | 773 | Thermostable B Type Dna Polymerase From Thermococcu | 2e-19 | ||
| 1tgo_A | 773 | Thermostable B Type Dna Polymerase From Thermococcu | 3e-08 | ||
| 2vwk_A | 773 | Uracil Recognition In Archaeal Dna Polymerases Capt | 7e-19 | ||
| 2vwk_A | 773 | Uracil Recognition In Archaeal Dna Polymerases Capt | 3e-08 | ||
| 2vwj_A | 773 | Uracil Recognition In Archaeal Dna Polymerases Capt | 8e-19 | ||
| 2vwj_A | 773 | Uracil Recognition In Archaeal Dna Polymerases Capt | 3e-08 | ||
| 1wn7_A | 774 | Crystal Structure Of Archaeal Family B Dna Polymera | 8e-19 | ||
| 1wns_A | 774 | Crystal Structure Of Family B Dna Polymerase From H | 9e-19 | ||
| 2xhb_A | 773 | Crystal Structure Of Dna Polymerase From Thermococc | 1e-18 | ||
| 2xhb_A | 773 | Crystal Structure Of Dna Polymerase From Thermococc | 3e-08 | ||
| 1qht_A | 775 | Dna Polymerase From Thermococcus Sp. 9on-7 Archaeon | 3e-17 | ||
| 1qht_A | 775 | Dna Polymerase From Thermococcus Sp. 9on-7 Archaeon | 6e-08 | ||
| 4flt_A | 793 | Pyrococcus Abyssi B Family Dna Polymerase Bound To | 4e-16 | ||
| 4flt_A | 793 | Pyrococcus Abyssi B Family Dna Polymerase Bound To | 5e-06 | ||
| 4fm2_A | 793 | Pyrococcus Abyssi B Family Dna Polymerase (Triple M | 3e-15 | ||
| 4fm2_A | 793 | Pyrococcus Abyssi B Family Dna Polymerase (Triple M | 6e-06 | ||
| 1q8i_A | 783 | Crystal Structure Of Escherichia Coli Dna Polymeras | 1e-05 | ||
| 3k5l_A | 786 | Crystal Structure Of E.Coli Pol Ii-Abasic Dna-Datp | 1e-05 | ||
| 1s5j_A | 847 | Insight In Dna Replication: The Crystal Structure O | 4e-05 |
| >pdb|2JGU|A Chain A, Crystal Structure Of Dna-directed Dna Polymerase Length = 775 | Back alignment and structure |
|
| >pdb|2JGU|A Chain A, Crystal Structure Of Dna-directed Dna Polymerase Length = 775 | Back alignment and structure |
| >pdb|1QQC|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase D.Tok Length = 773 | Back alignment and structure |
| >pdb|3A2F|A Chain A, Crystal Structure Of Pyrococcus Furiosus Dna PolymerasePCNA Monomer Mutant Complex Length = 775 | Back alignment and structure |
| >pdb|3A2F|A Chain A, Crystal Structure Of Pyrococcus Furiosus Dna PolymerasePCNA Monomer Mutant Complex Length = 775 | Back alignment and structure |
| >pdb|4AHC|A Chain A, Crystal Structure Of An Evolved Replicating Dna Polymerase Length = 775 | Back alignment and structure |
| >pdb|4AHC|A Chain A, Crystal Structure Of An Evolved Replicating Dna Polymerase Length = 775 | Back alignment and structure |
| >pdb|1D5A|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase D.Tok. Deposition Of Second Native Structure At 2.4 Angstrom Length = 733 | Back alignment and structure |
| >pdb|1TGO|A Chain A, Thermostable B Type Dna Polymerase From Thermococcus Gorgonarius Length = 773 | Back alignment and structure |
| >pdb|1TGO|A Chain A, Thermostable B Type Dna Polymerase From Thermococcus Gorgonarius Length = 773 | Back alignment and structure |
| >pdb|2VWK|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By X-Ray Crystallography. V93q Polymerase Variant Length = 773 | Back alignment and structure |
| >pdb|2VWK|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By X-Ray Crystallography. V93q Polymerase Variant Length = 773 | Back alignment and structure |
| >pdb|2VWJ|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By X-Ray Crystallography Length = 773 | Back alignment and structure |
| >pdb|2VWJ|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By X-Ray Crystallography Length = 773 | Back alignment and structure |
| >pdb|1WN7|A Chain A, Crystal Structure Of Archaeal Family B Dna Polymerase Mutant Length = 774 | Back alignment and structure |
| >pdb|1WNS|A Chain A, Crystal Structure Of Family B Dna Polymerase From Hyperthermophilic Archaeon Pyrococcus Kodakaraensis Kod1 Length = 774 | Back alignment and structure |
| >pdb|2XHB|A Chain A, Crystal Structure Of Dna Polymerase From Thermococcus Gorgonarius In Complex With Hypoxanthine-Containing Dna Length = 773 | Back alignment and structure |
| >pdb|2XHB|A Chain A, Crystal Structure Of Dna Polymerase From Thermococcus Gorgonarius In Complex With Hypoxanthine-Containing Dna Length = 773 | Back alignment and structure |
| >pdb|1QHT|A Chain A, Dna Polymerase From Thermococcus Sp. 9on-7 Archaeon Length = 775 | Back alignment and structure |
| >pdb|1QHT|A Chain A, Dna Polymerase From Thermococcus Sp. 9on-7 Archaeon Length = 775 | Back alignment and structure |
| >pdb|4FLT|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A Dsdna, In Edition Mode Length = 793 | Back alignment and structure |
| >pdb|4FLT|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A Dsdna, In Edition Mode Length = 793 | Back alignment and structure |
| >pdb|4FM2|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase (Triple Mutant) Bound To A Dsdna, In Edition Mode Length = 793 | Back alignment and structure |
| >pdb|4FM2|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase (Triple Mutant) Bound To A Dsdna, In Edition Mode Length = 793 | Back alignment and structure |
| >pdb|1Q8I|A Chain A, Crystal Structure Of Escherichia Coli Dna Polymerase Ii Length = 783 | Back alignment and structure |
| >pdb|3K5L|A Chain A, Crystal Structure Of E.Coli Pol Ii-Abasic Dna-Datp Lt(0, 3) Ternary Complex Length = 786 | Back alignment and structure |
| >pdb|1S5J|A Chain A, Insight In Dna Replication: The Crystal Structure Of Dna Polymerase B1 From The Archaeon Sulfolobus Solfataricus Length = 847 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A Length = 775 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 8e-34
Identities = 98/474 (20%), Positives = 173/474 (36%), Gaps = 89/474 (18%)
Query: 56 DEDTRKVYSCIDLYFVSQDGSTFKSKYKFRPYFYAATKEKMEMDVEAYLRRRYESQIADI 115
D T I ++ + F PYFYA K+ ++ + + + +
Sbjct: 6 DYITENGKPVIRVFKKENGEFKIEYDRTFEPYFYALLKDDSAIEDVKKVTAKRHGTVVKV 65
Query: 116 EILEKEDLDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLHVVERNQAKFDAAEAYESIL 175
+ EK K+ F+ Q + ++ +
Sbjct: 66 KRAEKVQKKFLGR----PIEVWKLYFNHPQDVPAIRDRIRA------------------- 102
Query: 176 TGKREQRPQDFLDCIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQ 235
+VD+ EYD+P+ R+ ID + + +
Sbjct: 103 -----------HPAVVDIYEYDIPFAKRYLIDKGLIPMEGDE------------------ 133
Query: 236 RAEVHVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPK 295
E+ + AF I T + I+MISY + +I ++ ++
Sbjct: 134 --ELTMLAFAIATLYHEGEEFGTGP--ILMISYADGSEARVITWKKIDLPYVD------- 182
Query: 296 PEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMS- 354
V+ E E+++ + ++E P + +TYNGD FD+ +L+ R G K +
Sbjct: 183 ----------VVSTEKEMIKRFLRVVREKDPDVLITYNGDNFDFAYLKKRCEELGIKFTL 232
Query: 355 ----EELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEV 410
E Q ++ K H D + ++R LP + L+AV +A G +V
Sbjct: 233 GRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLP--TYTLEAVYEAVFGKPKEKV 290
Query: 411 NPEDMVRF--AKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGS 468
E++ + + E + +A YS+ DA TY L P L+ +I S +V R +
Sbjct: 291 YAEEIAQAWESGEGLERVARYSMEDAKVTYEL-GREFFPMEAQLSRLIGQSLWDVSRSST 349
Query: 469 GTLCEMLLMVQAYKANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVF 522
G L E L+ +AYK N + PNK Y GG+V+ E G++
Sbjct: 350 GNLVEWFLLRKAYKRNELAPNKPDERELA------RRRGGYAGGYVKEPERGLW 397
|
| >1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A Length = 775 | Back alignment and structure |
|---|
| >3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} Length = 919 | Back alignment and structure |
|---|
| >3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} Length = 919 | Back alignment and structure |
|---|
| >1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 Length = 847 | Back alignment and structure |
|---|
| >1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 Length = 847 | Back alignment and structure |
|---|
| >3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A* Length = 786 | Back alignment and structure |
|---|
| >3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A* Length = 786 | Back alignment and structure |
|---|
| >2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B* Length = 1193 | Back alignment and structure |
|---|
| >2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B* Length = 1193 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 3spz_A* 3ne6_A* 3nhg_A* 3si6_A* 3scx_A* 3sjj_A* 3snn_A* 3ngi_A* 3lzi_A* 3lzj_A* 3ndk_A* ... Length = 903 | Back alignment and structure |
|---|
| >3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 3spz_A* 3ne6_A* 3nhg_A* 3si6_A* 3scx_A* 3sjj_A* 3snn_A* 3ngi_A* 3lzi_A* 3lzj_A* 3ndk_A* ... Length = 903 | Back alignment and structure |
|---|
| >1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A* Length = 388 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1988 | |||
| 3iay_A | 919 | DNA polymerase delta catalytic subunit; protein-DN | 100.0 | |
| 2gv9_A | 1193 | DNA polymerase; polymerase alpha fold, transferase | 100.0 | |
| 1qht_A | 775 | Protein (DNA polymerase); archaea, hyperthermostab | 100.0 | |
| 1s5j_A | 847 | DNA polymerase I; replication, disulfide bonds, tr | 100.0 | |
| 3k59_A | 786 | POL II, DNA polymerase II; protein-DNA complex, DN | 100.0 | |
| 3qex_A | 903 | DNA polymerase, GP43; difluorotoluene nucleoside; | 100.0 | |
| 1noy_A | 388 | Protein (DNA polymerase (E.C.2.7.7.7)); exonucleas | 100.0 | |
| 2py5_A | 575 | DNA polymerase; protein-DNA complex, replication, | 99.94 | |
| 2p1j_A | 186 | POLIII, DNA polymerase III POLC-type; structural g | 98.33 | |
| 1y97_A | 238 | Three prime repair exonuclease 2; TREX2, hydrolase | 98.24 | |
| 3mxm_B | 242 | Three prime repair exonuclease 1; RNAse H-like fol | 98.08 | |
| 3u3y_B | 314 | Three prime repair exonuclease 1; RNAse H fold, 3' | 97.98 | |
| 3v9w_A | 235 | Ribonuclease T; DEDD nucleases family, EXO-nucleas | 97.88 | |
| 2f96_A | 224 | Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolas | 97.79 | |
| 2gui_A | 194 | DNA polymerase III epsilon subunit; DNA polymerase | 97.71 | |
| 1w0h_A | 204 | 3'-5' exonuclease ERI1; nuclease domain, hydrolase | 97.7 | |
| 2qxf_A | 482 | Exodeoxyribonuclease I; alpha-beta domain, DNAQ su | 97.6 | |
| 1zbh_A | 299 | 3'-5' exonuclease ERI1; histone mRNA 3'-END-specif | 97.46 | |
| 1zbu_A | 349 | ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; | 97.22 | |
| 1wlj_A | 189 | Interferon stimulated gene 20KDA; exoribonuclease, | 96.72 | |
| 2xri_A | 224 | ERI1 exoribonuclease 3; hydrolase, metal binding; | 96.68 | |
| 3tr8_A | 186 | Oligoribonuclease; transcription, hydrolase; 2.50A | 95.99 | |
| 1x9m_A | 698 | DNA polymerase; DNA ploymerase, N-2-acetylaminoflu | 95.88 | |
| 2igi_A | 180 | Oligoribonuclease; RNAse, exoribonuclease, exonucl | 95.79 | |
| 1qht_A | 775 | Protein (DNA polymerase); archaea, hyperthermostab | 95.76 | |
| 3cg7_A | 308 | CRN-4, cell death-related nuclease 4; hydrolase, a | 95.52 | |
| 3iay_A | 919 | DNA polymerase delta catalytic subunit; protein-DN | 95.41 | |
| 3k59_A | 786 | POL II, DNA polymerase II; protein-DNA complex, DN | 95.31 | |
| 2gbz_A | 194 | Oligoribonuclease; ORN, deddh, structural genomics | 94.87 | |
| 2kfn_A | 605 | Klenow fragment of DNA polymerase I; complex (poly | 94.36 | |
| 1s5j_A | 847 | DNA polymerase I; replication, disulfide bonds, tr | 88.9 | |
| 2gv9_A | 1193 | DNA polymerase; polymerase alpha fold, transferase | 87.82 |
| >3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-123 Score=1233.64 Aligned_cols=791 Identities=18% Similarity=0.239 Sum_probs=628.4
Q ss_pred ceEEEEEeeeecccccccCCCCeEEEEEEEEecCCCeEEEEe-CCccEEEEEecCC---C-hHHHHH---HHHHhccccc
Q 000161 41 KRLGWLLTFASSSLEDEDTRKVYSCIDLYFVSQDGSTFKSKY-KFRPYFYAATKEK---M-EMDVEA---YLRRRYESQI 112 (1988)
Q Consensus 41 ~~~g~L~n~~~~~~~d~~~~~~~~~v~ly~~t~dG~~~~v~v-~f~PYFyv~~~~~---~-~~~v~~---~l~~~~~~~i 112 (1988)
.-..|+++..+.++.......++++|++||+|++|.+||++| +|+|||||.++++ . .+++++ .|++.+.+.+
T Consensus 46 ~~~f~~ld~~~~~~~~~~~~~~~~virlfg~t~~G~sv~v~V~gf~PYFYv~~~~~~~~~~~~~~~~~~~~L~~~~~~~v 125 (919)
T 3iay_A 46 DISFQQIDAEQSVLNGIKDENTSTVVRFFGVTSEGHSVLCNVTGFKNYLYVPAPNSSDANDQEQINKFVHYLNETFDHAI 125 (919)
T ss_dssp CEEEEEEEEEEEECSSSCBTTBCEEEEEEEEETTSCEEEEEEESCCCEEEEECCSSGGGGCHHHHHHHHHHHHTTTTTCE
T ss_pred ceEEEEEeccccccccccccCCeeEEEEEEEeCCCCEEEEEECCcCCEEEEEcCCcccccchhHHHHHHHHHHHhhcCCc
Confidence 466899999987652111113689999999999999999999 9999999999887 3 344544 4555556789
Q ss_pred eeEEEEEEeeCCCcCcCCCCCeEEEEEEEechhhHHHHHHHHHHHHHhhcccchhHHHHHHhhhcccCCCCccccccccc
Q 000161 113 ADIEILEKEDLDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLHVVERNQAKFDAAEAYESILTGKREQRPQDFLDCIVD 192 (1988)
Q Consensus 113 ~~ie~v~k~dl~~~nhl~g~~~~~lKl~f~~~~~l~~vr~~l~~~~~~n~~~~~~~~~y~~~~~~~~~~~~~~~~~~i~~ 192 (1988)
.+||+|+|++|+..|| +.+++|+||+|.+|.++.++|+.|++ +.. .|. ...+.+++
T Consensus 126 ~~ve~v~K~~l~gy~~--~~~~~~lKI~~~~p~~v~~~r~~l~~----g~~------~~~------------~~~~~~~~ 181 (919)
T 3iay_A 126 DSIEVVSKQSIWGYSG--DTKLPFWKIYVTYPHMVNKLRTAFER----GHL------SFN------------SWFSNGTT 181 (919)
T ss_dssp EEEEEEEEEESSCCSC--SCCEEEEEEEESSTTHHHHHHHHHHH----SCC------CGG------------GSSTTCCC
T ss_pred eEEEEEeeeccccCCC--CCceEEEEEEEcCHHHHHHHHHHHHc----ccc------ccc------------cccccCcc
Confidence 9999999999985554 56799999999999999999999984 110 010 11124678
Q ss_pred ccccCCCccceeeeecCCccceeEEEeeCC-------C-----CceEEEe----------ccccCCCCceEEEEEEEEcc
Q 000161 193 LREYDVPYHIRFAIDNDVRCGQWYDVSISS-------T-----GPLLEKR----------VDLLQRAEVHVCAFDIETTK 250 (1988)
Q Consensus 193 i~E~DI~~~~R~~iD~~I~~g~W~~v~~~~-------~-----~~~i~~~----------~~~~~~p~lrvLsfDIEt~s 250 (1988)
+|| ||||++||+||++|+||+||+++... . ++++.+. .++...|++++|||||||.+
T Consensus 182 ~yE-dI~~~~RfliD~~I~g~~W~~i~~~~~~~~~~~~~~S~c~~Ev~v~~~~l~~~~~~~~~~~~PplrilSfDIEt~~ 260 (919)
T 3iay_A 182 TYD-NIAYTLRLMVDCGIVGMSWITLPKGKYSMIEPNNRVSSCQLEVSINYRNLIAHPAEGDWSHTAPLRIMSFDIECAG 260 (919)
T ss_dssp CBC-CCCHHHHHHHHHTCCTTCEEEECTTSEEECCGGGCCBCCSEEEEEETTTCEEECSSGGGSCCCCCEEEEEEEEECC
T ss_pred ccc-CCChHhhheeecCCccceEEEEecCcceeccccCCccceeEEEEeeccccccccccccccCCCCceEEEEEEEECC
Confidence 999 99999999999999999999997432 1 2344331 12335799999999999999
Q ss_pred CCCCCCCCCCCeEEEEEEEEcCCceEEE-cccccccccccccCCCCCCCCCceEEecCCCHHHHHHHHHHHHHhhCCCEE
Q 000161 251 LPLKFPDADYDIIMMISYMLDGQGYLII-NRECVGEDIEDLEYTPKPEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIY 329 (1988)
Q Consensus 251 ~~~~fPdp~~D~Ii~IS~~~~~~g~li~-nreivs~di~~feytp~~~~~g~f~V~~~~dE~eLL~~F~~~I~~~DPDII 329 (1988)
.++.||+|+.|+|||||+++..+|.... .+. -|.+.+++...| +.|..+++|++||.+|+++|+++|||||
T Consensus 261 ~~g~fP~~~~D~Ii~IS~~v~~~g~~~~~~r~-------~f~l~~~~~~~~-~~V~~~~sE~eLL~~F~~~i~~~DPDII 332 (919)
T 3iay_A 261 RIGVFPEPEYDPVIQIANVVSIAGAKKPFIRN-------VFTLNTCSPITG-SMIFSHATEEEMLSNWRNFIIKVDPDVI 332 (919)
T ss_dssp CTTSCCCTTTCCEEEEEEEEEETTCSSCSEEE-------EEEESCCCCBTT-BEEEEESSHHHHHHHHHHHHHHHCCSEE
T ss_pred CCCCCCCCCCCcEEEEEEEEecCCCcccceeE-------EEEecCCCCCCC-CeEEECCCHHHHHHHHHHHHHHhCCCEE
Confidence 8888999999999999998866553110 011 133334444443 6899999999999999999999999999
Q ss_pred EeeCcccCCHHHHHHHHHHcCCCCCcccCccccCC-------------CC-----ceeeccceEechHHHHhhccCCCCC
Q 000161 330 VTYNGDYFDWPFLETRAAHHGFKMSEELGFQCDKN-------------QG-----ECRAKFACHLDCFAWVKRDSYLPQG 391 (1988)
Q Consensus 330 vGYNgd~FDlPyL~~Ra~~lGi~l~~~iG~~~~~~-------------~g-----~~~i~GRihiDl~~~vkrd~~L~~~ 391 (1988)
+|||+++||||||.+||+.||++.+..+|+. ++. .| .+.+.||+|+|+|++++++. ++.
T Consensus 333 vGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~-~~~~~~~~~~~~~~~~~g~~~~~~~~i~GR~~lDl~~~~k~~~--~l~ 409 (919)
T 3iay_A 333 IGYNTTNFDIPYLLNRAKALKVNDFPYFGRL-KTVKQEIKESVFSSKAYGTRETKNVNIDGRLQLDLLQFIQREY--KLR 409 (919)
T ss_dssp EESSTTTTHHHHHHHHHHHTTCTTCSCCSSB-TTCCCCBCCEEEEETTTEEEEECCBCCTTCEEEEHHHHHHHHC--CCS
T ss_pred EecCCccCCHHHHHHHHHHcCCCchhhhccc-cCccccccccccccccccccccceeEEcCeEEEEhHHHHHhhc--CCC
Confidence 9999999999999999999999988777765 211 11 24689999999999999974 559
Q ss_pred CCCHHHHHHHHcCCCCCCCChHHHHHHHhhC---hHHHHHHHHHhhHHHHHHHHHh-ccchHhhhhhhcCCChHHHhhhh
Q 000161 392 SQGLKAVTKAKLGYDPLEVNPEDMVRFAKEK---PQMMASYSVSDAVATYYLYMTY-VHPFIFSLATIIPMSPDEVLRKG 467 (1988)
Q Consensus 392 SysL~~Va~~~LG~~K~dvd~~~i~~~~~~~---~~~La~Y~l~Da~lt~~L~~Kl-v~~~i~~La~i~~l~~~~vlr~G 467 (1988)
||+|++||+++||++|.++++++|.++|.++ +.+++.||++||.+|++|+.|+ ++++++++|+++|+++++|+++|
T Consensus 410 sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~~Da~l~~~L~~kl~~l~~~~elArl~Gi~~~~vl~rG 489 (919)
T 3iay_A 410 SYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLPLRLMEKLMALVNYTEMARVTGVPFSYLLARG 489 (919)
T ss_dssp CCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCHHHHHHSC
T ss_pred CCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHcCCCHHHhhccc
Confidence 9999999999999999999999999999854 5699999999999999999998 78999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHCCeeccCCCCCCchhhhcccccCCCCCCcceeeeccCccccCCCCCCccCChhHHHHHhhhhhhh
Q 000161 468 SGTLCEMLLMVQAYKANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQLLNNLDRD 547 (1988)
Q Consensus 468 sg~~~E~LLm~~a~~~n~i~Pnk~~~~~~~~~~g~l~~setY~GG~V~~p~~GvY~~d~~~~f~~~~~~~~~l~~~~~~~ 547 (1988)
++.+||++|+++|+++|+|+|+++... ..++|.||+|++|++|+|.+
T Consensus 490 ~qi~ves~Llr~a~~~~~ilP~~~~~~----------~~~~y~Gg~V~eP~~G~y~~----------------------- 536 (919)
T 3iay_A 490 QQIKVVSQLFRKCLEIDTVIPNMQSQA----------SDDQYEGATVIEPIRGYYDV----------------------- 536 (919)
T ss_dssp HHHHHHHHHHHHHHHTTEECBCCCCCC----------CSSCCCCCCBCCCCCEEECS-----------------------
T ss_pred chHHHHHHHHHHHhhCCeeCCCccccc----------ccccCCCCEEecCCCCceec-----------------------
Confidence 999999999999999999999987531 24689999999999999987
Q ss_pred hHHHHhHhcccccccccchHHHHHHHHHHHHhhccCCCcccCCeEEEEeccccchHHHHhcCCCCCccccccccccccCC
Q 000161 548 LQYAIKVEGKMDLESVSNYDEVKNAIMEKLLRLQEEPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDFN 627 (1988)
Q Consensus 548 l~~~~~~e~~~~~~~~~n~~~v~~~i~~~l~~l~~~p~~~~~p~V~~LDf~SLYPsII~t~NL~p~Tiv~~~~c~~c~~n 627 (1988)
||++|||+|||||||++|||||+|++.+..+.. ++
T Consensus 537 -------------------------------------------pV~~lDF~SLYPSIi~~~Nlc~~Tl~~~~~~~~--~~ 571 (919)
T 3iay_A 537 -------------------------------------------PIATLDFNSLYPSIMMAHNLCYTTLCNKATVER--LN 571 (919)
T ss_dssp -------------------------------------------CEEEEEETTHHHHHHHHTTCSGGGEECHHHHHH--TT
T ss_pred -------------------------------------------cEEEEEecccchHHHHhcCcCcccccccchhhh--cC
Confidence 699999999999999999999999986531100 00
Q ss_pred CCCCccccccccccccccccCCcchhhHhhhhcccccccCCCCCcccccccCchHHHHHHHHHHHHHhhhhhcccccccc
Q 000161 628 RPGKTCLRKLEWVWRGEIFMGKRSDYYHLKKQIESEFVDGTNGHLSKSFLDLPKMEQQSRLKDRLKKYCQKAYKRVLDKP 707 (1988)
Q Consensus 628 ~p~~~c~r~m~w~~~ge~~p~~~~ey~~i~~~l~~e~f~~~~~g~~~~~~~L~~~~q~~~lkkrl~~y~~kvy~k~~~~~ 707 (1988)
.+ | ..+| ...|. |. .| .+.
T Consensus 572 ~~-----------------~--~~~~---------~~~p~---g~--~f------------------------~~~---- 590 (919)
T 3iay_A 572 LK-----------------I--DEDY---------VITPN---GD--YF------------------------VTT---- 590 (919)
T ss_dssp CC-----------------B--TTTE---------EECTT---SC--EE------------------------ECT----
T ss_pred CC-----------------C--Ccce---------eeCCC---Cc--EE------------------------ecc----
Confidence 00 0 0011 00010 00 01 110
Q ss_pred cccccccccccccccchHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 000161 708 VTELREAGICMRENSFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFYG 787 (1988)
Q Consensus 708 ~~~~r~~~icqre~~f~~~~lr~f~drR~~~K~l~K~~k~~~~~a~~~~d~~~~~e~~~~~~lyds~QlA~K~ilNS~YG 787 (1988)
.+..+++|.+|+.|+++|.++|+.||. +.|+. +..+||++|+|+|++|||+||
T Consensus 591 ----------~~~~gilp~~l~~ll~~R~~~K~~mk~----------~~d~~-------~~~~ld~~Q~AlKi~~NS~YG 643 (919)
T 3iay_A 591 ----------KRRRGILPIILDELISARKRAKKDLRD----------EKDPF-------KRDVLNGRQLALKISANSVYG 643 (919)
T ss_dssp ----------TTCCCHHHHHHHHHHHHHHHHHHHHHT----------CCCHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCCchHHHHHHHHHHHHHHHHHHhh----------cCChH-------HHHHHHHHHHhhccccccccc
Confidence 123469999999999999999998874 23554 247999999999999999999
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHc---------CCe-EEEccceeeEEcCCCCCcccccccccccccc
Q 000161 788 YVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKI---------GKP-LELDTDGIWCVLPGSFPENFTFKTKDLKKKL 857 (1988)
Q Consensus 788 y~g~~~sR~ys~e~A~~VT~~Gr~iI~~a~~lve~~---------G~~-vygDTDSI~~~lp~~~pe~~~~k~~~g~k~i 857 (1988)
|+|+.++||||.++|++||++||++|+.|++++|+. |.. ||||||||||.+++...++ ++ +.| +++
T Consensus 644 ~~G~~~~r~~~~~iA~siT~~GR~~l~~t~~~ie~~~~~~~g~~~~~~ViYGDTDSvfv~~~~~~~~~-~~--~~g-~~~ 719 (919)
T 3iay_A 644 FTGATVGKLPCLAISSSVTAYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDLKE-AM--DLG-TEA 719 (919)
T ss_dssp HHTCSSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGTCSSCCEEEECBSSEEEEECSCSCHHH-HH--HHH-HHH
T ss_pred ccccccCccCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCCeeEEEcCCCCHHH-HH--HHH-HHH
Confidence 999999999999999999999999999999999986 666 6999999999988643221 21 233 332
Q ss_pred cccccccccchhhhccccchhhhhccCCccccccccccceeEEeeeceeeeeecccccccCcccccceEEEcCC-----C
Q 000161 858 TISYPCVMLNVDVARNNTNDQYQTLVDPVSKTYETHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDD-----G 932 (1988)
Q Consensus 858 ~~sy~~~~ln~~V~~~~tN~~y~~l~~~~~~~y~~~s~~~I~fE~Dg~Y~~miLp~s~~~~~~~KKRYa~~~~d-----G 932 (1988)
+..|++.| +.+|++|+||+|++|+|.+ ||||||+..+ |
T Consensus 720 ---------~~~v~~~~--------------------~~~i~le~E~vy~~~ll~~--------KKrYag~~~~~~~~~~ 762 (919)
T 3iay_A 720 ---------AKYVSTLF--------------------KHPINLEFEKAYFPYLLIN--------KKRYAGLFWTNPDKFD 762 (919)
T ss_dssp ---------HHHHHTTS--------------------CTTCCEEEEEEEEEEEEEE--------TTEEEEEEESSSSSCC
T ss_pred ---------HHHHHHhC--------------------CCCEEEEEeeeehhhhhhc--------ccceEEEEeccCCCCc
Confidence 23332222 2235666669999999965 9999997422 3
Q ss_pred CEEEEEeeeeccCChhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhccccccCh
Q 000161 933 TLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADSELIDYISESSTMSKSL 1012 (1988)
Q Consensus 933 ~~~e~KG~E~kRRd~~~liK~~q~~v~~~~L~g~~lee~~~~v~~v~~~~~d~L~~~~~~~~~~eLi~~i~~~k~lsK~l 1012 (1988)
+ +++||+|++|||||+++|++|+++++.+|.+.+++++.+.+++++. +++.++++.++|+ ++|+|+|
T Consensus 763 ~-~~~KGie~vRrD~~~~~k~~~~~~l~~ll~~~~~~~~~~~~~~~~~------~l~~~~~~~~~lv----i~k~l~k-- 829 (919)
T 3iay_A 763 K-LDQKGLASVRRDSCSLVSIVMNKVLKKILIERNVDGALAFVRETIN------DILHNRVDISKLI----ISKTLAP-- 829 (919)
T ss_dssp E-EEEESSGGGCTTSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH------HHHTTCSCGGGGC----EEEECCS--
T ss_pred e-EEEEeEEEEeCCchHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH------HHHcCCCCHHHeE----Eeeeccc--
Confidence 4 4999999999999999999999999999999999999998887665 3568999989988 8999999
Q ss_pred hhhCCCCChHHHHHHHHHhhcCCCcccCCCCeeEEEEEcCCCCCCCcccccchhhhcchHHHHHHHHHhhhcCCCCCCCc
Q 000161 1013 ADYGEQKSCAVTTARRLSDFLGDTMVKDKGLRCQYIVACEPQGTPVSERAVPVAIFETDAEIMKFYLRKWCKTSSDVGIR 1092 (1988)
Q Consensus 1013 ~eY~~~k~~~v~~A~rl~e~lG~~~~~~~G~~i~YVI~~~p~g~~v~eRa~p~~if~~~~~~~~~~l~~w~~~~~~~d~~ 1092 (1988)
+|++ ++|||.+|+||+++.| ..+.+|++|+|||+ + .|++.++||+++..+..+ .
T Consensus 830 -~Y~~-~~phv~~A~r~~~~~~--~~~~~G~rI~YVi~-g-~~~~~~~ra~~p~~~~~~--------------------~ 883 (919)
T 3iay_A 830 -NYTN-PQPHAVLAERMKRREG--VGPNVGDRVDYVII-G-GNDKLYNRAEDPLFVLEN--------------------N 883 (919)
T ss_dssp -CCSS-CCHHHHHHHHHHHHHS--CCCCTTSEEEEEEB-C-SSSCGGGCEECHHHHHHT--------------------T
T ss_pred -CCCC-CChHHHHHHHHHHhcC--CCCCCCCEEEEEEE-C-CCCchhhhccCHHHHhcc--------------------C
Confidence 8986 6999999999998644 77899999999999 6 678999999999654321 4
Q ss_pred cccCHHHHHHhhhhhhhheeechhhhhhc
Q 000161 1093 SIVDWSYYKQRLSSAIQKIITIPAAMQKV 1121 (1988)
Q Consensus 1093 ~~iD~~YYierl~~~i~ki~~iPa~lq~~ 1121 (1988)
..||++|||++ |++|+++|.+
T Consensus 884 ~~iD~~yYi~~--------qi~ppl~Ri~ 904 (919)
T 3iay_A 884 IQVDSRYYLTN--------QLQNPIISIV 904 (919)
T ss_dssp CCBCHHHHHHH--------TTHHHHHHHH
T ss_pred CCCCHHHHHHh--------ccHHHHHHHH
Confidence 68999999999 9999999864
|
| >2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B* | Back alignment and structure |
|---|
| >1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A | Back alignment and structure |
|---|
| >1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 | Back alignment and structure |
|---|
| >3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A* | Back alignment and structure |
|---|
| >3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ... | Back alignment and structure |
|---|
| >1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A* | Back alignment and structure |
|---|
| >2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A* | Back alignment and structure |
|---|
| >2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
| >1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5 | Back alignment and structure |
|---|
| >3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A | Back alignment and structure |
|---|
| >3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B* | Back alignment and structure |
|---|
| >3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A | Back alignment and structure |
|---|
| >2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5 | Back alignment and structure |
|---|
| >2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A* | Back alignment and structure |
|---|
| >1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5 | Back alignment and structure |
|---|
| >2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A* | Back alignment and structure |
|---|
| >1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5 | Back alignment and structure |
|---|
| >2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
| >3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
| >1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A* | Back alignment and structure |
|---|
| >2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A | Back alignment and structure |
|---|
| >1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A | Back alignment and structure |
|---|
| >3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A | Back alignment and structure |
|---|
| >3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A* | Back alignment and structure |
|---|
| >2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A* | Back alignment and structure |
|---|
| >1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 | Back alignment and structure |
|---|
| >2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1988 | ||||
| d1tgoa1 | 347 | c.55.3.5 (A:1-347) Exonuclease domain of family B | 2e-45 | |
| d1s5ja1 | 410 | c.55.3.5 (A:40-449) Exonuclease domain of family B | 2e-39 | |
| d1q8ia1 | 388 | c.55.3.5 (A:2-389) Exonuclease domain of family B | 3e-38 | |
| d1noya_ | 372 | c.55.3.5 (A:) Exonuclease domain of family B DNA p | 4e-17 | |
| d1ih7a2 | 528 | e.8.1.1 (A:376-903) Family B DNA polymerase {Bacte | 4e-17 | |
| d1s5ja2 | 415 | e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfo | 2e-08 | |
| d1ih7a1 | 375 | c.55.3.5 (A:1-375) Exonuclease domain of family B | 6e-07 |
| >d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exonuclease domain of family B DNA polymerases species: Archaeon Thermococcus gorgonarius [TaxId: 71997]
Score = 166 bits (421), Expect = 2e-45
Identities = 83/417 (19%), Positives = 147/417 (35%), Gaps = 83/417 (19%)
Query: 56 DEDTRKVYSCIDLYFVSQDGSTFKSKYKFRPYFYAATKEKMEMDVEAYLRRRYESQIADI 115
D T I ++ F PY YA K+ ++ + +
Sbjct: 6 DYITEDGKPVIRIFKKENGEFKIDYDRNFEPYIYALLKDDSAIEDVKKITAERHGTTVRV 65
Query: 116 EILEKEDLDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLHVVERNQAKFDAAEAYESIL 175
EK +K G K+ F Q + ++ +
Sbjct: 66 VRAEK----VKKKFLGRPIEVWKLYFTHPQDVPAIRDKIKE------------------- 102
Query: 176 TGKREQRPQDFLDCIVDLREYDVPYHIRFAIDNDVRCGQWYDVSISSTGPLLEKRVDLLQ 235
+VD+ EYD+P+ R+ ID + + +
Sbjct: 103 -----------HPAVVDIYEYDIPFAKRYLIDKGLIPMEGDE------------------ 133
Query: 236 RAEVHVCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPK 295
E+ + AFDIET + + I+MISY + +I + ++
Sbjct: 134 --ELKMLAFDIETL--YHEGEEFAEGPILMISYADEEGARVITWKNIDLPYVDV------ 183
Query: 296 PEFEGYFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKM-- 353
V+ E E+++ + ++E P + +TYNGD FD+ +L+ R+ G K
Sbjct: 184 -----------VSTEKEMIKRFLKVVKEKDPDVLITYNGDNFDFAYLKKRSEKLGVKFIL 232
Query: 354 ---SEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEV 410
E Q ++ K H D + ++R LP + L+AV +A G +V
Sbjct: 233 GREGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLP--TYTLEAVYEAIFGQPKEKV 290
Query: 411 NPEDMVRF--AKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLR 465
E++ + E + +A YS+ DA TY L + P L+ ++ S +V R
Sbjct: 291 YAEEIAQAWETGEGLERVARYSMEDAKVTYELGKEFF-PMEAQLSRLVGQSLWDVSR 346
|
| >d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]} Length = 410 | Back information, alignment and structure |
|---|
| >d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]} Length = 388 | Back information, alignment and structure |
|---|
| >d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]} Length = 372 | Back information, alignment and structure |
|---|
| >d1ih7a2 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]} Length = 528 | Back information, alignment and structure |
|---|
| >d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus solfataricus [TaxId: 2287]} Length = 415 | Back information, alignment and structure |
|---|
| >d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]} Length = 375 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1988 | |||
| d1tgoa2 | 426 | Family B DNA polymerase {Archaeon Thermococcus gor | 100.0 | |
| d1s5ja2 | 415 | Family B DNA polymerase {Sulfolobus solfataricus [ | 100.0 | |
| d1q8ia2 | 394 | Family B DNA polymerase {Escherichia coli [TaxId: | 100.0 | |
| d1ih7a2 | 528 | Family B DNA polymerase {Bacteriophage RB69 [TaxId | 100.0 | |
| d1q8ia1 | 388 | Exonuclease domain of family B DNA polymerases {Es | 100.0 | |
| d1tgoa1 | 347 | Exonuclease domain of family B DNA polymerases {Ar | 100.0 | |
| d1s5ja1 | 410 | Exonuclease domain of family B DNA polymerases {Su | 100.0 | |
| d1noya_ | 372 | Exonuclease domain of family B DNA polymerases {Ba | 100.0 | |
| d1ih7a1 | 375 | Exonuclease domain of family B DNA polymerases {Ba | 100.0 | |
| d2py5a2 | 388 | phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: | 99.74 | |
| d1x9ma1 | 204 | Exonuclease domain of T7 DNA polymerase {Bacteriop | 99.27 | |
| d2guia1 | 174 | N-terminal exonuclease domain of the epsilon subun | 97.82 | |
| d3b6oa1 | 226 | Three prime repair exonuclease 1, TREX1 {Mouse (Mu | 97.73 | |
| d1y97a1 | 228 | Three prime repair exonuclease 2, TREX2 {Human (Ho | 97.33 | |
| d1wlja_ | 173 | Interferon-stimulated gene 20 kDa protein, ISG20 { | 97.31 | |
| d2qxfa1 | 467 | Exonuclease I {Escherichia coli K12 (Escherichia c | 97.19 | |
| d1tgoa2 | 426 | Family B DNA polymerase {Archaeon Thermococcus gor | 96.91 | |
| d1w0ha_ | 200 | Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 960 | 96.8 | |
| d1yt3a3 | 193 | Ribonuclease D, catalytic domain {Escherichia coli | 95.76 | |
| d1kfsa1 | 195 | Exonuclease domain of prokaryotic DNA polymerase { | 94.85 | |
| d2hhva1 | 171 | Exonuclease domain of prokaryotic DNA polymerase { | 93.74 | |
| d1q8ia2 | 394 | Family B DNA polymerase {Escherichia coli [TaxId: | 93.01 | |
| d2hbka2 | 292 | Exosome complex exonuclease RRP6 {Baker's yeast (S | 91.86 | |
| d2f96a1 | 202 | Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287 | 91.65 | |
| d1vk0a_ | 206 | Hypothetical protein AT5G06450 {Thale-cress (Arabi | 89.96 | |
| d1s5ja2 | 415 | Family B DNA polymerase {Sulfolobus solfataricus [ | 88.78 | |
| d2igia1 | 180 | Oligoribonuclease {Escherichia coli [TaxId: 562]} | 86.82 |
| >d1tgoa2 e.8.1.1 (A:348-773) Family B DNA polymerase {Archaeon Thermococcus gorgonarius [TaxId: 71997]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: Family B DNA polymerase species: Archaeon Thermococcus gorgonarius [TaxId: 71997]
Probab=100.00 E-value=1.3e-67 Score=654.07 Aligned_cols=422 Identities=28% Similarity=0.425 Sum_probs=336.5
Q ss_pred hhHHHHHHHHHHHHHHCCeeccCCCCCCchhhhcccccCCCCCCcceeeeccCccccCCCCCCccCChhHHHHHhhhhhh
Q 000161 467 GSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQLLNNLDR 546 (1988)
Q Consensus 467 Gsg~~~E~LLm~~a~~~n~i~Pnk~~~~~~~~~~g~l~~setY~GG~V~~p~~GvY~~d~~~~f~~~~~~~~~l~~~~~~ 546 (1988)
.+|+++|++|+++|+++|+++|++...... + ...++|.||+|++|++|+|++
T Consensus 1 s~g~~ve~~~~~~~~~~~~~~p~~~~~~~~----~--~~~~~y~Gg~V~~p~~G~~~~---------------------- 52 (426)
T d1tgoa2 1 STGNLVEWFLLRKAYERNELAPNKPDEREL----A--RRRESYAGGYVKEPERGLWEN---------------------- 52 (426)
T ss_dssp CHHHHHHHHHHHHHHHTTBCCCCCCCHHHH----H--HCCCCCCCCCEECCCCSEEEE----------------------
T ss_pred CchHHHHHHHHHHHHHCCEEeccCCccccc----c--ccccCcCCceEccCCCCcCCC----------------------
Confidence 369999999999999999999998653211 1 135789999999999999876
Q ss_pred hhHHHHhHhcccccccccchHHHHHHHHHHHHhhccCCCcccCCeEEEEeccccchHHHHhcCCCCCccccccccccccC
Q 000161 547 DLQYAIKVEGKMDLESVSNYDEVKNAIMEKLLRLQEEPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEVCTACDF 626 (1988)
Q Consensus 547 ~l~~~~~~e~~~~~~~~~n~~~v~~~i~~~l~~l~~~p~~~~~p~V~~LDf~SLYPsII~t~NL~p~Tiv~~~~c~~c~~ 626 (1988)
|++|||+|||||||++|||||+|++.+. |..+.
T Consensus 53 ---------------------------------------------v~~lDf~SLYPsii~~~Ni~p~T~~~~~-~~~~~- 85 (426)
T d1tgoa2 53 ---------------------------------------------IVYLDFRSLYPSIIITHNVSPDTLNREG-CEEYD- 85 (426)
T ss_dssp ---------------------------------------------EEEEEESSHHHHHHHHTTCSTTTBTCTT-CSSEE-
T ss_pred ---------------------------------------------eEEEEccchhHHHHHHhCCChhhcCCCC-ccccc-
Confidence 9999999999999999999999997542 21110
Q ss_pred CCCCCccccccccccccccccCCcchhhHhhhhcccccccCCCCCcccccccCchHHHHHHHHHHHHHhhhhhccccccc
Q 000161 627 NRPGKTCLRKLEWVWRGEIFMGKRSDYYHLKKQIESEFVDGTNGHLSKSFLDLPKMEQQSRLKDRLKKYCQKAYKRVLDK 706 (1988)
Q Consensus 627 n~p~~~c~r~m~w~~~ge~~p~~~~ey~~i~~~l~~e~f~~~~~g~~~~~~~L~~~~q~~~lkkrl~~y~~kvy~k~~~~ 706 (1988)
..|+. |
T Consensus 86 -------------------------------------~~~~~--g----------------------------------- 91 (426)
T d1tgoa2 86 -------------------------------------VAPQV--G----------------------------------- 91 (426)
T ss_dssp -------------------------------------ECTTT--C-----------------------------------
T ss_pred -------------------------------------cCCCC--C-----------------------------------
Confidence 01110 0
Q ss_pred ccccccccccccccccchHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 000161 707 PVTELREAGICMRENSFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKCILNSFY 786 (1988)
Q Consensus 707 ~~~~~r~~~icqre~~f~~~~lr~f~drR~~~K~l~K~~k~~~~~a~~~~d~~~~~e~~~~~~lyds~QlA~K~ilNS~Y 786 (1988)
...|+...+++|.+|+.|++.|.++|++||.. +|+. +..+||++|+|+|+++||+|
T Consensus 92 -------~~~~~~~~Gilp~~l~~l~~~R~~~K~~~k~~----------~~~~-------~~~~~d~~Q~a~Ki~~NS~Y 147 (426)
T d1tgoa2 92 -------HKFCKDFPGFIPSLLGDLLEERQKVKKKMKAT----------IDPI-------EKKLLDYRQRAIKILANSFY 147 (426)
T ss_dssp -------CEEECSSCCHHHHHHHHHHHHHHHHHHHHHHC----------CCHH-------HHHHHHHHHHHHHHHHTTHH
T ss_pred -------ceEeccCCCchHHHHHHHHHHHHHhhhhhhhc----------cchH-------HHHHHHHHHHHHHHhhhHHH
Confidence 01233445799999999999999999988752 2443 24799999999999999999
Q ss_pred ccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-cCCe-EEEccceeeEEcCCCCCccccccccccccccccccccc
Q 000161 787 GYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEK-IGKP-LELDTDGIWCVLPGSFPENFTFKTKDLKKKLTISYPCV 864 (1988)
Q Consensus 787 Gy~g~~~sR~ys~e~A~~VT~~Gr~iI~~a~~lve~-~G~~-vygDTDSI~~~lp~~~pe~~~~k~~~g~k~i~~sy~~~ 864 (1988)
||+|++++||||+++|++||++||++|+.|++.|++ .|.. ||||||||||.+|+...++.. ..+ +++
T Consensus 148 G~~G~~~~~~~~~~~A~~iT~~GR~~i~~~~~~i~~~~g~~ViYgDTDSi~v~~~~~~~~~~~---~~~-~~~------- 216 (426)
T d1tgoa2 148 GYYGYAKARWYCKECAESVTAWGRQYIETTIREIEEKFGFKVLYADTDGFFATIPGADAETVK---KKA-KEF------- 216 (426)
T ss_dssp HHHHCTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEESSEEEEECTTCCHHHHH---HHH-HHH-------
T ss_pred HHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHcCCeeeeecccceEEecCCchhHHHH---HHH-HHH-------
Confidence 999999999999999999999999999999998876 4987 699999999999875332211 112 221
Q ss_pred ccchhhhccccchhhhhccCCccccccccccceeEEeeeceeeeeecccccccCcccccceEEEcCCCCEEEEEeeeecc
Q 000161 865 MLNVDVARNNTNDQYQTLVDPVSKTYETHSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKR 944 (1988)
Q Consensus 865 ~ln~~V~~~~tN~~y~~l~~~~~~~y~~~s~~~I~fE~Dg~Y~~miLp~s~~~~~~~KKRYa~~~~dG~~~e~KG~E~kR 944 (1988)
...| |. .+ +..|++|+|++|.++++.+ ||||++++.+|++ ++||+|++|
T Consensus 217 --~~~i-----~~-----------~~----~~~i~le~E~iy~~~l~~~--------KKrY~~~~~~~k~-~~kGie~~R 265 (426)
T d1tgoa2 217 --LDYI-----NA-----------KL----PGLLELEYEGFYKRGFFVT--------KKKYAVIDEEDKI-TTRGLEIVR 265 (426)
T ss_dssp --HHHH-----HT-----------TS----CTTCCEEEEEEEEEEEEEE--------TTEEEEECTTCCE-EEESCSCCS
T ss_pred --HHHH-----HH-----------Hh----cchhhhheeeeeeecceec--------ccceeeeecCCCc-ccceeeecC
Confidence 1111 11 11 2346666679999999976 9999999999998 999999999
Q ss_pred CChhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhhccccccChhhhCCCCChHHH
Q 000161 945 RGELKLIKVFQAELFDKFLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADSELIDYISESSTMSKSLADYGEQKSCAVT 1024 (1988)
Q Consensus 945 Rd~~~liK~~q~~v~~~~L~g~~lee~~~~v~~v~~~~~d~L~~~~~~~~~~eLi~~i~~~k~lsK~l~eY~~~k~~~v~ 1024 (1988)
||+|+++|++|.++++.+|.+.+++++.+.+.+.+++ +..++++.++|+ ++++++|.+++|.. .+||+.
T Consensus 266 rd~~~~~k~~~~~vl~~il~~~d~~~~~~~i~~~~~~------l~~~~~~~edl~----i~~~l~k~~~~Yk~-~~phv~ 334 (426)
T d1tgoa2 266 RDWSEIAKETQARVLEAILKHGDVEEAVRIVKEVTEK------LSKYEVPPEKLV----IYEQITRDLKDYKA-TGPHVA 334 (426)
T ss_dssp SCBCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH------HHTTCSCGGGSC----EEEECSSCGGGSCS-SSSHHH
T ss_pred CCCchhHHHHHHHHHHHHhccCccchhhHHHHHHHHH------HhcCCCCHHHHh----hhhhhccChhhccc-cCcHHH
Confidence 9999999999999999999999999999998877653 456889988887 79999999999986 679999
Q ss_pred HHHHHHhhcCCCcccCCCCeeEEEEEcCCCCCCCcccccchhhhcchHHHHHHHHHhhhcCCCCCCCccccCHHHHHHhh
Q 000161 1025 TARRLSDFLGDTMVKDKGLRCQYIVACEPQGTPVSERAVPVAIFETDAEIMKFYLRKWCKTSSDVGIRSIVDWSYYKQRL 1104 (1988)
Q Consensus 1025 ~A~rl~e~lG~~~~~~~G~~i~YVI~~~p~g~~v~eRa~p~~if~~~~~~~~~~l~~w~~~~~~~d~~~~iD~~YYierl 1104 (1988)
+|+||.++ | ..+.+|++|+|||++++. ++.+||+|++.|... ...|||+||+++
T Consensus 335 ~a~rl~~~-g--~~i~~GdrI~Yvivk~~~--~~~d~~~~~~~~~~~--------------------~~~iD~~yYiek- 388 (426)
T d1tgoa2 335 VAKRLAAR-G--IKIRPGTVISYIVLKGSG--RIGDRAIPFDEFDPA--------------------KHKYDAEYYIEN- 388 (426)
T ss_dssp HHHHHHHH-T--CCCCTTSEEEEEEBCCSS--STTCCEEEGGGCCTT--------------------TCCBCHHHHHHH-
T ss_pred HHHHHHhc-C--CCCCCCCEEEEEEEeCCC--cccceeecHHHhCcc--------------------CCCCCHHHHHHH-
Confidence 99999985 7 567889999999998764 789999999877542 357999999999
Q ss_pred hhhhhheeechhhhhhccCCCCCcchhhhhhhhhhccccccccccHHHhhhc
Q 000161 1105 SSAIQKIITIPAAMQKVSNPVPRVVHPDWLYKKVREKEDKFRQRKLVDIFSS 1156 (1988)
Q Consensus 1105 ~~~i~ki~~iPa~lq~~~npv~rv~~p~w~~~~~~~~~~~~kq~~l~~~f~~ 1156 (1988)
|++|++.+.+ +|+ .|-.+.+. .+..||.+|.+||.+
T Consensus 389 -------qi~~pl~~il-~~~------g~~~e~l~--~~~~kq~~L~~f~~~ 424 (426)
T d1tgoa2 389 -------QVLPAVERIL-RAF------GYRKEDLR--YQKTRQVGLGAWLKP 424 (426)
T ss_dssp -------TTGGGTHHHH-HTT------TCCGGGSS--CSSSCCCCCTTSSCT
T ss_pred -------HHHHHHHHHH-hhc------CCCHHHhc--cCCCCcccHHHhcCC
Confidence 7888765544 333 46655553 334589999999974
|
| >d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1q8ia2 e.8.1.1 (A:390-783) Family B DNA polymerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ih7a2 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]} | Back information, alignment and structure |
|---|
| >d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]} | Back information, alignment and structure |
|---|
| >d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
| >d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]} | Back information, alignment and structure |
|---|
| >d2py5a2 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]} | Back information, alignment and structure |
|---|
| >d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
| >d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]} | Back information, alignment and structure |
|---|
| >d1tgoa2 e.8.1.1 (A:348-773) Family B DNA polymerase {Archaeon Thermococcus gorgonarius [TaxId: 71997]} | Back information, alignment and structure |
|---|
| >d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1q8ia2 e.8.1.1 (A:390-783) Family B DNA polymerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d2igia1 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|